BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV Sbjct: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM Sbjct: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 >gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 289 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 213/288 (73%), Positives = 238/288 (82%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ SMV FAKMEGIGNKILV+DMR DNIT +AIN LST+DN FDQIM IH+ Q+ Sbjct: 1 MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM Sbjct: 61 DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDW+ IPLA+ FD D +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + FG LL + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288 >gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] Length = 294 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 150/290 (51%), Positives = 194/290 (66%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A L+ D T FDQIM IHD + Sbjct: 2 ASTTPFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGTAF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DG+ Q+CGNGMRCVV+ L + +KSFTFET+ GIL A E+ DGSISVDMG Sbjct: 62 FIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDMGM 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELDR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HP+F E N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+ +T Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTRRT 241 Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+VS+ GGG L +EW D++HV +TG A+ E+ G D TG W + E Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291 >gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894] Length = 301 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 151/291 (51%), Positives = 197/291 (67%), Gaps = 5/291 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSR 292 >gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512] Length = 351 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/291 (51%), Positives = 199/291 (68%), Gaps = 5/291 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 52 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V++D+ YDLA Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSR 342 >gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652] gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 301 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/291 (51%), Positives = 198/291 (68%), Gaps = 5/291 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSR 292 >gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1] gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1] Length = 293 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/289 (51%), Positives = 192/289 (66%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + FAKM G+GN I+V DMRG D + +A L++D THFDQIM IHD + + Sbjct: 2 AELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTEN 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I IIN DGS Q+CGNGMRCVV+ L + R SFTFETI G+L A+E+ +G ISVDMG+ Sbjct: 62 YIEIINSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGK 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F + +GP++ L +P V SMGNPHAIF+VEDD Y YDL Sbjct: 122 PRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG +L HP+F E N++IARV S E L +RTWERG GLT ACGSAACA+ V++ +T Sbjct: 182 FGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRT 241 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R V V + GG L I W D++HV MTG A+ E+ G+ D TG W ++ E Sbjct: 242 GRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETE 290 >gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 301 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 5/291 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 R V++ + L IEW + ++HV MTG A+ EW G LD TG W + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSR 292 >gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] Length = 292 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/283 (54%), Positives = 193/283 (68%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 S V FAKM G+GN I+VIDMRG D +TS+A AL++ D T FDQIM IHD VD Sbjct: 3 STVPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGVDYR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I I+N DGS Q+CGNG RCVV+ L S RKSFTF+T+ GIL A+E+ DG ISVDMG P Sbjct: 63 IDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDMGRP 122 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IPLA F R IGP++ L +P V++GNPHA+F+V+DD++ YDL F Sbjct: 123 EFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDLERF 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL HP+F E N+SIARV +LD+RTWERG GLT ACGSAACA+ V++ +T Sbjct: 183 GPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTGRTG 242 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 R V+V + GG L IEW +NNHV MTG A+ E+ G++D TG W Sbjct: 243 RTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAW 285 >gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1] gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1] Length = 300 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 301 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 150/292 (51%), Positives = 197/292 (67%), Gaps = 5/292 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSRE 293 >gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330] gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19] gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330] gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19] gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28] gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90] Length = 303 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] Length = 303 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3] Length = 297 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + Sbjct: 1 MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDM Sbjct: 61 DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDL Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240 Query: 241 KTNRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 +T R V++ + L IEW + ++HV MTG + EW G+LD TG W + Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSR 293 >gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] Length = 303 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] Length = 304 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 150/292 (51%), Positives = 196/292 (67%), Gaps = 5/292 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 5 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 65 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244 Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSRE 296 >gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1] Length = 303 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] Length = 294 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 150/290 (51%), Positives = 195/290 (67%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + Sbjct: 2 ASTAPFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAY 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ I+N DG+ Q+CGNGMRCVV+ L + +K+FTFET GIL A+E+ DG+ISVDMG Sbjct: 62 YVDILNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGM 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L Sbjct: 122 PHFGWQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HP+F E N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+ +T Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRT 241 Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+V++ GGG L +EW DN+HV +TG A+ E+ G D TG W + E Sbjct: 242 GRSVNLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291 >gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] Length = 303 Score = 288 bits (736), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 195/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVD+G P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021] gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021] Length = 306 Score = 288 bits (736), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 150/281 (53%), Positives = 190/281 (67%), Gaps = 1/281 (0%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 9 QVQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWI 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 69 DIVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPR 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 129 FGWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFG 188 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 189 PLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTER 248 Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + ++HV MTG A+ EW G +D TG Sbjct: 249 MVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTG 289 >gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] Length = 303 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 194/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] Length = 301 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 150/281 (53%), Positives = 190/281 (67%), Gaps = 1/281 (0%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 4 QVQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWI 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 64 DIVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPR 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 124 FGWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 184 PLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTER 243 Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + ++HV MTG A+ EW G +D TG Sbjct: 244 MVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTG 284 >gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2] gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2] Length = 303 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/284 (51%), Positives = 194/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P W Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653] gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653] Length = 303 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 147/281 (52%), Positives = 193/281 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSR 287 >gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 194/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV TG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33] Length = 303 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 194/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISV MG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] Length = 303 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 146/284 (51%), Positives = 194/284 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + + P + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] Length = 300 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/287 (53%), Positives = 197/287 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM G+GN+I+V DMRG D IT +A L+ D T FDQIM IHD + A D +I II Sbjct: 7 FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG+E Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 V + GG L IEW D++HV MTG A+ E+ G D TG+W + ++D+ Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQNDK 293 >gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99] Length = 303 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 193/284 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG + E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQ 290 >gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] Length = 303 Score = 285 bits (729), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 193/284 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290 >gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 318 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/281 (53%), Positives = 195/281 (69%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM G+GN+I+V DMRG D IT +A L++D T FDQIM IHD + A D +I II Sbjct: 25 FAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGTDNYIAII 84 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 85 NCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 144 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 145 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 204 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 205 EHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTRRTGRTVT 264 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + Sbjct: 265 VNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSR 305 >gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] Length = 294 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/281 (51%), Positives = 192/281 (68%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I IINCD Sbjct: 1 MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW+ I Sbjct: 61 GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL H Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+V + Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 281 >gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419] gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419] Length = 292 Score = 281 bits (719), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 150/275 (54%), Positives = 186/275 (67%), Gaps = 1/275 (0%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GNKILV+DMRG D +T A L+ D T FDQIM IHD + A DA+I I+N D Sbjct: 1 MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS Q+CGNG RCVV+ L + +K+F F T+ G+L AKE+ DGSISVDMG+P W I Sbjct: 61 GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA F R IGP+ L +P VVSMGNPHAIF+VE+D+ YDL FG LL H Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+ +T RAV+V + Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240 Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 GG L IEW + ++HV MTG A+ EW G LD TG Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTG 275 >gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] Length = 306 Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 148/280 (52%), Positives = 188/280 (67%), Gaps = 1/280 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA+I Sbjct: 10 VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + +K+F F T+ G+L A+E+ DG ISVDMG P Sbjct: 70 IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+ +T+R Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + ++HV MTG A+ EW G +D TG Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATG 289 >gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42] gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42] Length = 301 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS ++ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 R V + + L IEW + ++HV MTG A+ EW G+LD TG W + + Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDD 294 >gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 294 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/290 (52%), Positives = 198/290 (68%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + + Sbjct: 2 ASTAPFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DG+ Q+CGNGMRCVV+ L + +K FTFET+ GIL A+E+ DGSISVDMG Sbjct: 62 FIDILNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGT 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VVSMGNPHAIF+V++D++ Y+L Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+ ++T Sbjct: 182 FGPLLENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRT 241 Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+VS+ GGG L +EW D++HV +TG A+ E+ G D G W + E Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTE 291 >gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] Length = 312 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/288 (50%), Positives = 195/288 (67%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GN+I+V D+RG I+ A AL+ + T FDQIM IHD + DA IR Sbjct: 21 VPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTDALIR 80 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IIN DGSE ++CGNG RCVV+ L S ++ FTFET GI++A E DG I+VDMG P Sbjct: 81 IINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMGRPRF 140 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP++ L +P V SMGNPHAIF+V++D++ YDL FG Sbjct: 141 GWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLERFGP 200 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++ +T+RA Sbjct: 201 VLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGRTDRA 260 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 V+V + GG LLI W +++ V MTG A W G+LD TG +++ +++ Sbjct: 261 VTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEE 308 >gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] Length = 301 Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 149/294 (50%), Positives = 196/294 (66%), Gaps = 5/294 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I I+N DG++ Q+CGNG RCVV+ L + +K FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P V+SMGNPHAIF+V+ D YDLA Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+V S L RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R V++ + G L IEW +N +HV MTG A+ EW G +D TG + + E Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQE 295 >gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] Length = 299 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 146/287 (50%), Positives = 189/287 (65%), Gaps = 4/287 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+ NKILV+DMRG D +T A AL+++ T FDQIM IHD + DAFI Sbjct: 5 VEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+NCDG++ Q+CGNG RCVV+ L+S + SFTF+T+ GIL A E+ DG ISVDMG P Sbjct: 65 ILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGLPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL FG Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACAS V++ +T R Sbjct: 185 LLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRK 244 Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V++ + L I+W ++NHV MTG A+ EW G +D TG W + Sbjct: 245 VTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWAR 291 >gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] Length = 304 Score = 271 bits (693), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 145/283 (51%), Positives = 193/283 (68%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GN+I+V+D+RG I++ A AL+ D T FDQIM IHD + DA++R Sbjct: 13 VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IIN DGSE ++CGNG RCVV+ L + R+ FTFET GIL A E DG I+VDMG P Sbjct: 73 IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F IGP++ L +P V SMGNPHAIF+V+ D++ Y+L FG Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++ +T R Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V+V + GG LLI+W D++HV MTG A+ W G+LD TG +++ Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVR 295 >gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] Length = 300 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/287 (50%), Positives = 189/287 (65%), Gaps = 4/287 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DAFI Sbjct: 5 VEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDAFID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+NCDG++ Q+CGNG RCVV+ L+S + +FTF+T+ GIL A E+ DG ISVDMG P Sbjct: 65 ILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGLPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL FG Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACA+ V++ +T R Sbjct: 185 LLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRTGRK 244 Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V++ + L IEW ++NHV MTG A+ EW G +D +G + + Sbjct: 245 VTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSR 291 >gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4] gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4] Length = 303 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 5/291 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+GNKILV+DMRG D + A AL+ + THFDQIM IHD + A A+I Sbjct: 5 VEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFAYID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IINCDG+ Q+CGNG RCVV+ L++ K+FTF+T+ GIL A E+ D ++SVDMG P+ Sbjct: 65 IINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGSPVF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPL+ F R IGP++ L +P V+SMGNPHA+F+V+ D YDL FG Sbjct: 125 DWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+++A+VTS ++ RTWERG GLT ACGSAACA+ V++ + R Sbjct: 185 LLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRAERK 244 Query: 246 VSVKMLGG----GLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V++ + L IEW + + HV MTG A+ EW G+LD +TG W ++ + Sbjct: 245 VTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQ 295 >gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130] gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130] Length = 288 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 135/284 (47%), Positives = 171/284 (60%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++ V F+KM GIGN+I+V D+RG D +T +A AL D +T FDQ+M IHD D + DA Sbjct: 2 NTPVSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 IRI N DGS +CGNG RCVV +L R F F L AK DG ISV+MG Sbjct: 62 TIRIYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGV 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P DW IPL+ F +GP+ L P V ++GNPH +FF E+D Y L Sbjct: 122 PRFDWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDK 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG +L H +F + N+SIA+VTS ++ LRTWERG GLT ACGSAACA+VV + T Sbjct: 182 FGPMLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELT 241 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 R V+V + GG L IEW D+N + MTG A E++G D TG W Sbjct: 242 ERHVTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGW 285 >gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] Length = 293 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/275 (47%), Positives = 173/275 (62%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ + +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + + GG L IEW DN NHV MTG A+ E+EG+ D Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFD 280 >gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] Length = 297 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 124/275 (45%), Positives = 172/275 (62%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T+ A+++ +DQ+M++ + +AF+RI Sbjct: 16 FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + + G SVDMG P Sbjct: 76 NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F +GP++ L +P VVSMGNPHAIF+V DD++ YDLA FG L Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDIHAYDLARFGPL 194 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R V Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFD 289 >gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 130/276 (47%), Positives = 164/276 (59%), Gaps = 6/276 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 9 FLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121 N DGSE +CGNG RCV L M R + T ET G++ K + S +VDMG Sbjct: 69 NTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMG 128 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L W IPL F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 129 QPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLG 188 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 189 RIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRM 248 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 RA V + GG L IEW ++HV MTG E EG Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEG 284 >gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1] gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1] Length = 296 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 130/276 (47%), Positives = 164/276 (59%), Gaps = 6/276 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 9 FLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121 N DGSE +CGNG RCV L M R + T ET G++ K + S +VDMG Sbjct: 69 NTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMG 128 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 129 QPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLG 188 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 189 RIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRM 248 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 RA V + GG L IEW ++HV MTG E EG Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEG 284 >gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] Length = 293 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 174/275 (63%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ + +DQ+ML+ + + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAA--HVPYDQLMLLQPARLSGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + S ++ TFET G+L + DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAAC++ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + +NHV MTG A E+EG+ D Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFD 280 >gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] Length = 293 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/276 (45%), Positives = 166/276 (60%), Gaps = 4/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN+I+V+D+RG + A++ D + FDQ+M++HD A DA +RI Sbjct: 9 FLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS--FTFETIRGILVAKENRDGSISVDMGEP 123 N DGSE +CGNG RCV + M R + T ++ G+L +VDMG P Sbjct: 69 NTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGPP 128 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W IPLA F R IGP++ L +P VVSMGNPHA+FFV+ D YDLA Sbjct: 129 RLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLARI 188 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL HP+F E N+S+A+V E + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 189 GPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLTG 248 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V + GG L+I+W +++HV MTG + EWEG L Sbjct: 249 RRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284 >gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] Length = 293 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 175/275 (63%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ + +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R L + ++ TFET G+L + +G +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD++ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWV-DDIHAYDLGQFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A+ E+EG+ D Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFD 280 >gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] Length = 293 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 129/275 (46%), Positives = 172/275 (62%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ + +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW D +NHV MTG A+ E+EG+ D Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFD 280 >gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] Length = 293 Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 172/275 (62%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ + +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAA--HLPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + ++ TFET G+L + DG +VDMGEP Sbjct: 67 NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F IGP++ L P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWV-DDIEAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + +R V Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L I W + +NHV MTG A E+EG+ D Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFD 280 >gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46] gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46] Length = 293 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/276 (44%), Positives = 167/276 (60%), Gaps = 4/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN+I+V+D+R + + A++ D + FDQ+M++HD DA +RI Sbjct: 9 FLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKR--KSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGSE +CGNG RCV + + M R + T E+ G+L D +VDMG P Sbjct: 69 NRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGPP 128 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W IPL+ F R IGP++ L +P VVSMGNPHA+FFV+ D YDL Sbjct: 129 HLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGRI 188 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL HP+F E N+S+A+V + + + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 189 GPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLTG 248 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V + GG L+I W +++HV MTG + EWEG+ Sbjct: 249 RRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284 >gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] Length = 285 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 162/275 (58%), Gaps = 6/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV L M R + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A V + GG L IEW ++HV MTG E EG Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTF 275 >gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] Length = 285 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/275 (46%), Positives = 162/275 (58%), Gaps = 6/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV L M R + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + GG L IEW ++HV MTG E EG Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTF 275 >gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/276 (46%), Positives = 172/276 (62%), Gaps = 4/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRI 66 FAKM GIGN+I+V+DMR +T D A+ S +DQ+M++ + +AFI I Sbjct: 9 FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPIL 125 N DGSE +CGNGMRCVVR + + + + TFET G+L A + + +VDMG P Sbjct: 69 YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP+++ L +P VVSMGNPHAIF+V DD+ YDLA FG Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWV-DDVNAYDLARFGP 187 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 V + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFD 283 >gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001] gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001] Length = 296 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/278 (47%), Positives = 166/278 (59%), Gaps = 6/278 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G GN I+V+D+RG + A++ D ++ FDQ+M++HD DAF+RI Sbjct: 9 FLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121 N DGSE +CGNG RCV L M R + T ET G++ K D S +VDMG Sbjct: 69 NTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDMG 128 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D +DL Sbjct: 129 QPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDLG 188 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL HP+F E N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 189 RIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLRM 248 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 RA V + GG L IEW ++HV MTG E EG L Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSL 286 >gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 122/278 (43%), Positives = 163/278 (58%), Gaps = 6/278 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G GN I+V+D+RG + + A++ D + FDQ+M++HD DAF+RI Sbjct: 39 FLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRIY 98 Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121 N DGSE +CGNG RCV + M R + ET G+L + + + +VDMG Sbjct: 99 NTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDMG 158 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPL+ F R IGP++ L +P V+MGNPHA+FFVE D +DLA Sbjct: 159 RPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDLA 218 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L HP+F E N+S+A+VT E++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 219 RIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLRM 278 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R SV + GG L +EW ++HV MTG EG L Sbjct: 279 IGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316 >gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] Length = 288 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 169/274 (61%), Gaps = 4/274 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R + A +A + +DQ+M++ + +AF+RI Sbjct: 9 FSKMNGIGNEIVVLDLR--DHPVAVSAADARAIASEVPYDQLMVLQPPRTPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGSE +CGNGMRCV R + + + TFET G+L +VDMG P L W Sbjct: 67 NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K IPLA F IGP++ L P VVSMGNPHAIF+V DD+ +DLA FG LL Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAHDLARFGPLL 185 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+++A++ + + +RTWERGVGLT ACGSAACA+ VA+ L + NR V Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + GG L IEW ++HV MTG A E+EG+ D Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFD 279 >gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] Length = 289 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 122/277 (44%), Positives = 172/277 (62%), Gaps = 4/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAA--RVPYDQLMVLQPPRLDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCVVR + + + S TFET G+L + + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VV+MGNPHA+F+V+ D+ YDL FG L Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + GG L IEW + ++HV MTG A E+EG+ + + Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283 >gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] Length = 289 Score = 225 bits (573), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 128/279 (45%), Positives = 175/279 (62%), Gaps = 1/279 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S + F KM G+GN+I+V+D+R T+D A++ D +HFDQ+M++H + ++ Sbjct: 4 ASSLPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTES 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE +CGNGMRCV L + + RK F ET G+L SI+VDMGE Sbjct: 64 LVRIYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGE 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VV++GNPHAIF+V DD+ YDL Sbjct: 124 PRFGWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWV-DDVEAYDLGR 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L HP+F E N+S+A+VTS SL L+TWERG GLT ACGSAACA+ V++ T Sbjct: 183 LGPMLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLT 242 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V V + GG L + W DNN + MTG + E+EG +D+ Sbjct: 243 ERTVDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDL 281 >gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2] gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2] Length = 290 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 171/275 (62%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +++ A++ + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWV-DDIDAYDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +TNR V Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFD 282 >gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] Length = 289 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/275 (44%), Positives = 173/275 (62%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A+++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAS--RVPYDQMMVLQRPRFDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCVV + + + S TFET G+L + + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHA+F+V++D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A++ + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG+ + Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFE 281 >gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] Length = 290 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/275 (42%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T++ A+++ +DQ+M++ + +AF+ I Sbjct: 9 FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + G +VDMG P Sbjct: 69 NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG G+T ACGSAACA+ VA+ L + +R V Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GGGL IEW + ++HV MTG A E+ G D Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFD 282 >gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] Length = 284 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 169/281 (60%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM G+GNKI+V DMR NIT A+ AL+ + THFDQIM IH D I I Sbjct: 5 FSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ ++CGNG RCV+ +LT+ +SF ET GI+ K +G ISV+MG P D Sbjct: 65 NADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFDI 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P+A + GP L++ +VS GN HAIFFVE ++ H L +G L Sbjct: 125 KNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA VTS SL LRTWERG GLT ACG+AACAS VA+ T R ++ Sbjct: 180 EHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRIN 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V +LGG L I + +++H+ MTG + E+ G L TG + K Sbjct: 240 VNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKK 280 >gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] Length = 301 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 120/275 (43%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R ++T++ A+++ +DQ+M++ + +A +RI Sbjct: 20 FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L N G +VDMG P Sbjct: 80 NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 198 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERGVGLT ACGSAAC + VA+ L + R V Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFD 293 >gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] Length = 290 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/275 (43%), Positives = 167/275 (60%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+++D+R +++ A++ +DQ+M++ + AF+RI Sbjct: 9 FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHAIF+V DD+ YDL G L Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWV-DDIEAYDLERLGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A V + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFD 282 >gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498] Length = 283 Score = 216 bits (549), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 128/281 (45%), Positives = 169/281 (60%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH ++ I I Sbjct: 5 FSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEINFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+MG P D Sbjct: 65 NSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFDA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P+AR + GP L++ +VS+GN HA FF E+++ H L +G L Sbjct: 125 KNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + T R + Sbjct: 180 ENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRGLTERCID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V +LGG L I + +++HV MTG + E+ G L+ TG + K Sbjct: 240 VNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKK 280 >gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1] gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1] Length = 304 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 124/289 (42%), Positives = 168/289 (58%), Gaps = 5/289 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59 M S+ F KM G+GN +V D R +++ + I AL FDQ++ + + A Sbjct: 1 MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITV-ECSPAG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SV 118 DAF+RI NCDGS+V +CGN RCV R L R ET G+LVA+ D + +V Sbjct: 60 ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V D+ Y Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWV-GDVEAY 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA VA+ Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 + R +V + GG L IEW + + HV MTG + E+EG++D+ T W Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAW 287 >gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3] Length = 284 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/281 (46%), Positives = 171/281 (60%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM G+GNKI+V DMR NIT AI L+ + THFDQIM IH + +D I I Sbjct: 5 FSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEIDFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ ++CGNG RCVV +LT+ +SF ET GI+ K +G ISV+MG P D Sbjct: 65 NADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNMGCPNFDA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P+A + GP L++ ++S+GN HAIFFVE+++ H L +G L Sbjct: 125 KNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA VTS SL LRTWERGVGLT ACGSAACAS VA+ T R + Sbjct: 180 EHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRGLTERRID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 + GG L I + +NNH+ MTG + E+ G L+ TG + K Sbjct: 240 INSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKK 280 >gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] Length = 288 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/275 (44%), Positives = 165/275 (60%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R D + A A + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVLDLR--DDPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCV + + S + FE+ G+L I +VDMG P Sbjct: 67 NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VSMGNPHAIF+V DD++ +DL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWV-DDVHAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + +RTWERGVGLT ACGSAACA+ VA+ L + R V Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L I+W + ++HV MTG A E+EG LD Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLD 280 >gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C] Length = 283 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 170/281 (60%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH ++ I I Sbjct: 5 FSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEINFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+MG P + Sbjct: 65 NSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFNA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P+AR + GP L++ +VS+GN HAIFFVE+++ L +G L Sbjct: 125 KNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + T R + Sbjct: 180 ENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRGLTERCID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V +LGG L I + +++H+ MTG + E+ G L+ TG + K Sbjct: 240 VNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKK 280 >gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse] gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse] Length = 283 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/281 (46%), Positives = 169/281 (60%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM+G+GN+I+V DMR +T AI AL+ D THFDQIM IH D I I Sbjct: 5 FRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS ++CGNG RCV+ +LT +SF ET GI+ K D ISVDMG P + Sbjct: 65 NADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFNA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P++R + + GP L++ +VS+GN HAIFFVED++ L +G L Sbjct: 125 KEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 180 EHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + GG L I + ++NH+ MTG K E+ G L+ TG + K Sbjct: 240 VNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKK 280 >gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1] Length = 283 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/283 (44%), Positives = 171/283 (60%), Gaps = 5/283 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F+KM G+GN+I+V DMR NIT AI L+ D THFDQIM IH D I Sbjct: 3 IPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFRIE 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS ++CGNG RCV+ +L++ KSF ET G++ + +G I VDMG P L Sbjct: 63 IWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCPHL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + K +P++R + + GP L++ +VS+GN HAIFFV+ ++ L +G Sbjct: 123 NAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKYGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L P+F E N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+ T R Sbjct: 178 KLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTERH 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 + V + GG L I + ++NH+ MTG+A+ E+ G D TG + K Sbjct: 238 IDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEK 280 >gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771] Length = 227 Score = 209 bits (531), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/216 (51%), Positives = 146/216 (67%), Gaps = 5/216 (2%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 +CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW IPLA Sbjct: 1 ACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEE 60 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA FG LL HPMF E Sbjct: 61 FHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPE 120 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG--- 252 N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T R V + + Sbjct: 121 RANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKP 180 Query: 253 -GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 G L IEW + ++HV MTG A+ EW G+LD TG W Sbjct: 181 PGTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLW 216 >gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] Length = 321 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 5/298 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59 M S+ V F KM G+GN +V D R N+ + I AL D FDQ++ + + Sbjct: 15 MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITV-ERSPLG 73 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISV 118 VDAF+RI NCDGS+V +CGN RCV R L T ET G+L A +++V Sbjct: 74 VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L+W IPLA F IGP++ +L P +SMGNPHAIF+V+D + + Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVKD-VEAH 192 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G LL HP+F EG N+S+A V + + L+ WERG GLT ACG+AACA+ VA+ Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 K R ++ + GG + IEW + ++HV MTG + E+EG++D+ T +W + D+A Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310 >gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] Length = 270 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D R D I A S FDQ++ I D +D DAF+R+ N Sbjct: 1 MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGEPIL 125 DG V++CGN +RCV +L K+ +T+ G A+ R G+ S+DMG+P L Sbjct: 59 DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPL+ + + +GP + P VSMGNPH +FFV DD+ D+ + G+ Sbjct: 119 DWRDIPLSEEMNTA-KLELKVGPYDAPLYHTPVAVSMGNPHCVFFV-DDIATVDVKATGS 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F E VN+ A++ +++ +R WERG G+T ACG+ ACA++VA+ T RA Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG L I W +N+HV MTG + E+EG L Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270 >gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2] gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2] Length = 290 Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 158/272 (58%), Gaps = 2/272 (0%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM GIGN+IL++D+RG +T A++ FDQ+M++ D + AF+ I N Sbjct: 11 KMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFNA 70 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS+ +CGNG RCV L R ET G L + + SV+MG P L Sbjct: 71 DGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAAE 130 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+R GP + L+NP VV+MGNPHAIFFVE D+ YDLA+ G +L Sbjct: 131 IPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLEH 189 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 P+F E N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+ T R +V Sbjct: 190 DPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATVA 249 Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + GG L I W + ++ V MTG E+E +LD Sbjct: 250 LPGGELDIFWRESDDMVVMTGPVAFEFETRLD 281 >gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] Length = 303 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 172/297 (57%), Gaps = 7/297 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M S F KM G+GN +V D R + +AI AL + FDQ++ + + Sbjct: 1 MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITV-ERSSLG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SIS 117 VDAF+RI N DGSEV +CGN RC+ R L + T ET G+L A + DG S++ Sbjct: 60 VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAF-DADGPRSVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V DD+ Sbjct: 119 VDMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWV-DDVEA 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y+L G LL HP+F E N+S+A V + + ++ WERGVGLT ACG+AACA VA+ Sbjct: 178 YELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAA 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 +T+R ++ + GG + IEW + +NHV M+G + E+EG++D+ T W K D Sbjct: 238 RDGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294 >gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] Length = 282 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/282 (45%), Positives = 171/282 (60%), Gaps = 8/282 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-FQDASVDAFIRI 66 F+KM G+GNKI+V D+R NIT AI AL+++ THFDQIM IH QDA D I I Sbjct: 5 FSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQDA--DFRIEI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCV+ +L + +F ET GI+ K DG ISVDMG P L+ Sbjct: 63 WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ +VS+GN HAIFF+E ++ + L +G Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + G L I + D+ H+ MTG + E+ G + TG + K Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKK 279 >gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476] gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476] Length = 283 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/283 (43%), Positives = 169/283 (59%), Gaps = 5/283 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM+G+GN+I+V DMR +T AI ALS D HFDQIM I + D I I Sbjct: 5 FSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ ++CGNG RCV+ +LT ++F E GI+ K D ISVDMG P + Sbjct: 65 NADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFNA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G L Sbjct: 125 KEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA +TS +SL+LRTWERG GLT ACGSAACA VA+ T R + Sbjct: 180 EHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V + GG L I + +++H+ MTG K ++ G L+ TG + K N Sbjct: 240 VNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDN 282 >gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW] gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW] Length = 291 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 112/274 (40%), Positives = 159/274 (58%), Gaps = 10/274 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R +T+ A A++ D +T DQI+L+ + + D F+R Sbjct: 5 FLKMHGLGNDFVVLDARRDPLPLTTAAARAIA-DRHTGVGCDQIVLLEPPRHPAADLFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV + R T ET G+L + DGS++VDMG L Sbjct: 64 ILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGPARL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA + D + R GP L++ V MGNPHA+FFV DD DLA+ G Sbjct: 124 DWTQIPLAAAHDTL-RVPAGAGP-----LQDACCVGMGNPHAVFFV-DDAEAVDLATLGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F + N+ +A+V + + + +R WERG G+T ACGS +CA++VA+ T RA Sbjct: 177 VLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRA 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +++ GG L IEWH + HV MTG + G+L Sbjct: 237 AWIELDGGRLWIEWHGDGHVLMTGPVATAFTGEL 270 >gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] Length = 317 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/277 (40%), Positives = 157/277 (56%), Gaps = 14/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN+ILV+D+R +++ + A AL+ FDQ M+++ + A AF+RI+ Sbjct: 41 FVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRIL 100 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGSE +CGNG RC+ + R+ + FE+ G+L DG ++VDMG P L W Sbjct: 101 NSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGW 160 Query: 128 KLIPLARSFDKMDRDRFH----IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IPLAR + +GP + +VSMGNPHA+FFV D D+ + Sbjct: 161 DAIPLARPVADTSAVQIEGFASLGPAS--------MVSMGNPHAVFFVP-DANAVDVEAL 211 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F E N+S A+V S + + L WERG G T ACG+AACA+ V++ +T Sbjct: 212 GATLEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTG 271 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L+I+W + HV MTG E+ G L Sbjct: 272 RKVRVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTL 308 >gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup] gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup] Length = 283 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/281 (45%), Positives = 166/281 (59%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM+G+GN+I+VIDMR +T AI ALS D HFDQIM IH D I I Sbjct: 5 FSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS ++CGNG RCVV +L + F ET GI+ D ISVDMG P + Sbjct: 65 NADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFNA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G L Sbjct: 125 KEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+ T R + Sbjct: 180 EHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + G L I + +++HV MTG K ++ G L TG + K Sbjct: 240 VNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKK 280 >gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1] gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1] Length = 283 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 168/281 (59%), Gaps = 5/281 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM+G+GN+I+V DMR +T AI +L+ D T+FDQIM IH D I I Sbjct: 5 FSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEIW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS +CGNG RCV+ +LT + F ET GI+ K D ISVDMG P + Sbjct: 65 NADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFNA 124 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P++R + GP LR+ +VS+GN HAIFFVE+D+ + L +G+ L Sbjct: 125 KEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSKL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F + N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 180 EHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNID 239 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 V + GG L I + +++H+ MTG K + G L+ TG + K Sbjct: 240 VNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKK 280 >gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] Length = 293 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/283 (42%), Positives = 166/283 (58%), Gaps = 9/283 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFIRII 67 M G+GN +V D R +T D I L D H FDQ++ + + VDAF+RI Sbjct: 1 MNGLGNDFVVWDAREKPLRLTKDQIAKLG--DREHGIGFDQMITV-ERSTCGVDAFMRIH 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DG +V +CGN RC+ R L + T ET G+L A + +++VDMG+P L+ Sbjct: 58 NSDGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLN 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA F IGP++ L P VV+MGNPHAIF+V+D + YDLA G L Sbjct: 118 WDQIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVKD-VEAYDLARVGPL 176 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +HP+F EG N+S+A + + ++ WERG GLT ACG+AACA VA+ KT R Sbjct: 177 LERHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKT 236 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288 ++ + GG + IEW + + HV MTG + E+EG++DI+T W K Sbjct: 237 TIHLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRK 279 >gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] Length = 291 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 169/290 (58%), Gaps = 9/290 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA--FIRII 67 M G+GN +V D R +T I + + FDQ++ + + AS DA F+RI Sbjct: 1 MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITV---EPASSDAYAFMRIH 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-KENRDGSISVDMGEPILD 126 N DGSEV +CGN RC+ R L S T +T G+L+A + + +SVDMG P L+ Sbjct: 58 NRDGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLE 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA F IGP++ L +P VV++GNPHAIF+V DD+ +DL FG L Sbjct: 118 WDQIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWV-DDIEAHDLERFGPL 176 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HPMF E N+S+A++ + L+ WERGVGLT ACG+AACA+ VA+ + R Sbjct: 177 LECHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKC 236 Query: 247 SVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 +V + GG L IEW DN+H+ MTGE E+EG+L++ T + K D A Sbjct: 237 TVHLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286 >gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 106/271 (39%), Positives = 156/271 (57%), Gaps = 7/271 (2%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM G GN + D R T++ I ++ D DQ++ + +DA+ D F+RI N Sbjct: 5 KMNGAGNAFAIFDARSTAFTPTTEQIRKIAAD--LKADQVIAME--RDATKDVFMRIWNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGSEV +CGN RCV + + T +T +L A +G I+VDMG P + W+ Sbjct: 61 DGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQMGWED 120 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D D IGP++ L P VVSMGNPHA+FFV+D + YD+ + G L+ Sbjct: 121 IPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVKD-VAAYDIPAIGPLVEW 178 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F +G N+ A+V E++ LR WER GLT ACG+ ACA++V + T R + Sbjct: 179 HPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRKARMI 238 Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + GG L I+W + ++HV+MTG + E+E ++ Sbjct: 239 LDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269 >gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] Length = 288 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 3/273 (1%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 +M G GN+ILV+D+RG +T+ A++ FDQ+M +H+ + A +AF+RI N Sbjct: 12 RMNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNN 71 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGNG RCV L + + + ET G + + + SVDMG P LDW+ Sbjct: 72 DGSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRA 131 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPLA + D R + P V+MGNPHA+FFVED L + G + Sbjct: 132 IPLAG--EGADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVEDP-AAIALEALGPPIET 188 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F E VN+S A V + + LR WERG G+T ACGSAACA++VA+ + R V+ Sbjct: 189 HPLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVR 248 Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + GG L I+W ++HV MTG + E+ +LD + Sbjct: 249 LPGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281 >gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] Length = 280 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 156/279 (55%), Gaps = 10/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R ++ + A FDQ++ I AS DAF+R+ Sbjct: 5 FLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMRV 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122 N DG V++CGN +RCV +L +T+ G AK + + G +SVDMG Sbjct: 63 WNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ + +R +GP++ P VSMGNPH +FFVED + D+ Sbjct: 123 PRLAWTQIPLSEEMNT-ERLELQVGPIDAPLYHTPCAVSMGNPHVVFFVED-VAAVDVER 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+L+ HP+F EGVN+ A+V ++ +R WERG G+T ACG+ ACA++VA + Sbjct: 181 TGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGLS 240 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +R +V M GG L I W ++HV MTG + E+EG+L+ Sbjct: 241 DRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279 >gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506] gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506] Length = 293 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 159/273 (58%), Gaps = 3/273 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN+I+V+D+R + AL+ +D FDQIM ++ + AF+RII Sbjct: 9 FVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRII 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGSE +CGNG RC+ + R FE++ G+L +G I+ DMG P W Sbjct: 69 NADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFGW 127 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPLA GP LR P VV++GNPHAIF+V D + DL +G L Sbjct: 128 HDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWVHD-IEAVDLGRYGPEL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+S A+V S + + L+ WERG GLT ACGSAACA+ V++ + T R V+ Sbjct: 187 EHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRVT 246 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V + GG L+I+W + ++H+ MTG A E++G+L Sbjct: 247 VTLPGGDLVIDWRESDDHILMTGPAVFEFDGRL 279 >gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2] gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2] Length = 290 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 153/277 (55%), Gaps = 14/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN+ILV+D+R + + A AL+ FDQ M+++ + AF+RI+ Sbjct: 14 FVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRIL 73 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS +CGNG RC+ R FE+ G+L DG + VDMG P DW Sbjct: 74 NSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFDW 133 Query: 128 KLIPLARSFDKMDR---DRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IPLAR + + F +GP + +VSMGNPHA+FFV D D+ Sbjct: 134 RDIPLARDVAETAQVIVPGFEALGPTS--------LVSMGNPHAVFFVP-DANAVDVEKL 184 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F E N+S A +T+ + + L WERG G T ACG+AACA+ V++ +T Sbjct: 185 GAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTG 244 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R+V+V + GG L I W + + HV MTG + E+ G L Sbjct: 245 RSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTL 281 >gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/279 (40%), Positives = 149/279 (53%), Gaps = 9/279 (3%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM G+GN I+V+D+RG I++ A+ HFDQ+M++HD AF+RI N Sbjct: 11 KMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYNI 70 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS +CGNG RCV L R ET G L + + SVDMG+P W Sbjct: 71 DGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFAW 130 Query: 128 KLIPLARSFDK-----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 IPLA + RD + PV+ LR +V+MGNPHA+ FV D DLA Sbjct: 131 DAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFVADQ-DACDLAL 189 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L HP+F + N+SIA V S + + L+ WERG G T ACGSAACA++VA+ Sbjct: 190 VGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGLA 249 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 R + + GG L I W ++HV MTG E+ +LD Sbjct: 250 AREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLD 288 >gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] Length = 277 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 161/284 (56%), Gaps = 13/284 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDA 58 MQ+S F KM G GN +V++ +D + AL+ D T FDQ++ I A Sbjct: 1 MQAS-TPFVKMNGAGNDFVVVNALETPFTPDADRVRALA-DRRTGEGFDQLIAIEPSDRA 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 DAF+R+ N DG V++CGN +RCV L S T +T+ G +A+ ++V Sbjct: 59 --DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTV 116 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176 DMG P LDW+ IPLA + D + IGP++ + P VSMGNPH +FF + DD++ Sbjct: 117 DMGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFTDRLDDVF 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G+++ HP+F +GVN+ A V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 176 ---VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAA 232 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 T R+ +V + GG L I+W + HV MTG + E G+L Sbjct: 233 SRRGLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276 >gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] Length = 291 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 169/293 (57%), Gaps = 5/293 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59 M S + F KM G+GN V+D R +T+D +A++ + DQ++++ A Sbjct: 1 MAFSHISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D F+RI+N DGSEV +CGN RCV + + + R+ T ET G+L A+ + DG ++VD Sbjct: 60 -DVFMRILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P W+ IPLA+ I + L P V ++GNPHAIF+V D + YD Sbjct: 119 MGVPRFGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWVAD-VDAYD 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA+FG L P+F E N+S+A V +++ LR WERG G+T ACG+AACA+ V++ Sbjct: 178 LATFGGALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAART 237 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 +T R+V +++ GG + IEW D++H+ MTG E+EG L + G E Sbjct: 238 GRTGRSVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGGSLTVARE 290 >gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510] gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510] Length = 283 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 151/286 (52%), Gaps = 9/286 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 +F KM G+GN +VID R ++ + A++ DQ +++ DAF+R Sbjct: 4 EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG E +CGN RCV L R +F+T G+L A +G I+VDMG P L Sbjct: 64 IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA D + + V H P V+MGNPHA+FFV DD L G Sbjct: 124 DWAAIPLAAPADTL-----RVETVAHGGFAAPVAVNMGNPHAVFFV-DDAEAVPLDEVGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP F E N+ A+V S ++ +R WERG G+T ACGS +CA++VA+ T+R Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWIKK 289 + + GG L IEW + + V MTG + G+L ++ +G+ + + Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELVSR 283 >gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] Length = 288 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 146/279 (52%), Gaps = 8/279 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQDASVD 61 F KM G+GN +VI + T + I A++ DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A++R N DG +CGNG RCV L + + F+T+ G L D ++VDMG Sbjct: 65 AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P LDW IPLA + +R +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 PPGLDWTQIPLAEEMNT-ERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+L+ HP+F EGVN+ A + S + + L+ WERG GLT ACG+ ACA+ VA+ Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 T+R V+ G L IEW +++ HV MTG E+ GKL Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282 >gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1] Length = 280 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/274 (39%), Positives = 155/274 (56%), Gaps = 10/274 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D+R +T A++ D T DQ+++I + DA++ Sbjct: 9 FLKMHGLGNDFVVVDVRRSGFVLTPAMARAIA-DRRTGLGCDQVVVIETARSGLSDAWMS 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGS +CGN RCV L + ET G+L A+ D ++VDMG L Sbjct: 68 LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPLA+ D + H+G + L +P VSMGNPHA+FFV DD+ DLA+ G Sbjct: 128 DWREIPLAKPVDTL-----HMG-IGIGSLTDPVGVSMGNPHAVFFV-DDVAAIDLAALGP 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F E N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+ T R Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + GG L IEW ++HV MTG EG+L Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274 >gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] Length = 301 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 153/279 (54%), Gaps = 13/279 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R ++T + + A+++ DQ++++ D DA + I Sbjct: 25 FLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPCADATMLI 84 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV +CGN RCV L + F+T G+L A+ ++VDMG LD Sbjct: 85 YNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVDMGPARLD 144 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA + D + H+G ++ L +P VSMGNPHA+FFV DD +LA G Sbjct: 145 WREIPLAEAVDTL-----HLG-ISAGPLADPVGVSMGNPHAVFFV-DDAEAVNLAQLGRG 197 Query: 187 LAKHPMFSEGVNLSIARVTS-----LESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 L H +F E N+ +A+V + + + +R WERG G+T ACG+ ACA++VA+ Sbjct: 198 LEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLVAAARRGL 257 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + R + + GG L IEW + HV MTG + G LD Sbjct: 258 SPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296 >gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] Length = 288 Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 145/282 (51%), Gaps = 17/282 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 S + F KM G+GN +++D RG H +T I AL+ DQ++ + Sbjct: 17 HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D F+R N DGSE +CGN RCV + ++ +T G L A+ +G I+VDM Sbjct: 77 DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 GEP L+W+ +PL D + HL L +P SMGNPHA FFVED + Sbjct: 137 GEPRLNWQDVPLVAEMDTL-----------HLPLEGDPAAASMGNPHATFFVED----FA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 S G L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + Sbjct: 182 RLSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARR 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 242 GLVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDL 283 >gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 284 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 105/279 (37%), Positives = 150/279 (53%), Gaps = 13/279 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R ++T + + A+++ DQ++++ D+ DA + I Sbjct: 8 FLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSCADAQMLI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV +CGN RCV L + F+T G+L A+ ++VDMG LD Sbjct: 68 YNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVDMGPARLD 127 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA + D + H+G + L +P VSMGNPHA+FFV DD LA G Sbjct: 128 WREIPLAEAMDTL-----HLG-ITAGPLSDPVGVSMGNPHAVFFV-DDAEAVPLAQLGRG 180 Query: 187 LAKHPMFSEGVNLSIARVTSLESLD-----LRTWERGVGLTAACGSAACASVVASGCLHK 241 L H +F E N+ +A+V S D +R WER G+T ACG+ ACA++VA+ Sbjct: 181 LEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLVAAARRGL 240 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + R + + GG L IEW + HV MTG + G LD Sbjct: 241 SPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279 >gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] Length = 277 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 153/283 (54%), Gaps = 18/283 (6%) Query: 1 MQS---SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ 56 MQS + + F KM G+GN +V+D RG +T + AL+ + FDQ+ +I D Sbjct: 1 MQSNSDTGLPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAIITDGG 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A D + N DGS +CGN RC+ R+ R + S T T RG+L+A+E +G Sbjct: 61 NA--DLHLTFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLT 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV+MG P+ DW IPLA D + P+ L P SMGNPH FFV DD+ Sbjct: 119 SVNMGHPMTDWDEIPLAEDVDTLAL------PI----LGAPTATSMGNPHCTFFV-DDVM 167 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DLA+ G + HP+F E N+ A+V + + +R WERG G+T A GS++CA+ VA+ Sbjct: 168 AIDLAAIGPTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAA 227 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T V + + GG L +EW D+ V+MTG + G L Sbjct: 228 YRRGLTRAKVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVL 269 >gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03] gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07] gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22] gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26] gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32] gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12] Length = 270 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 106/279 (37%), Positives = 146/279 (52%), Gaps = 17/279 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +++D R H ++T I AL+ DQ++ + D F Sbjct: 2 LTSFRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADVF 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DGSE +CGN RCV + ++ +T G L A+ +G I+VDMGEP Sbjct: 62 VRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGEP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L+W+ +PLA D + HL L +P SMGNPHA FFVED + S Sbjct: 122 RLNWQDVPLAAEMDTL-----------HLPLEGDPAAASMGNPHATFFVED----FVRLS 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + Sbjct: 167 QGHALEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLI 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 227 GRVCEVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDL 265 >gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] Length = 275 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/282 (39%), Positives = 156/282 (55%), Gaps = 14/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62 ++DF KM G+GN +V D R S + A D T DQ++++ A DA Sbjct: 2 LIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--DA 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+RI N DGSE +CGN RCV L R + ET+ G+L+A+ N +G I +DMG+ Sbjct: 60 FMRIYNPDGSESGACGNATRCVADLL-HRDGIAAPCMETVAGLLLAEINGNG-ICIDMGQ 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W+ +PLAR D + P+ L+ P SMGNPHA FFV D L D+ Sbjct: 118 PGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFVAD-LAELDIPV 170 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +HP+F E N+ A++ S + LR WERG GLT ACG+ ACA++V + Sbjct: 171 TGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGLA 230 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 R V++ GG LLI W + + HV MTG A + G++ +++ Sbjct: 231 EREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272 >gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] Length = 277 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 109/274 (39%), Positives = 142/274 (51%), Gaps = 10/274 (3%) Query: 8 FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +V+D R D + A DQI+LI +D AF+RI Sbjct: 7 FLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGSE +CGN RCV L + T T G+L A+ + VDMG P L Sbjct: 65 LNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKLG 124 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA D + R +GPV +NP SMGNPHA FFV DDL H + + G Sbjct: 125 WEDIPLAEPADTLSL-RLALGPV-----QNPAACSMGNPHATFFV-DDLTHLQIETIGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 178 LEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARRA 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 238 EIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 278 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 1 MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG P Sbjct: 61 VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LDW+ +PLAR+ D + HL L +P SMGNPHA FF+ DD+ D Sbjct: 121 ALDWRDVPLARAADTL-----------HLPLAGDPAAASMGNPHATFFL-DDMLDLDPVV 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 169 AGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 228 Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLD 280 R +V M GG L + W + HV MTG A + G D Sbjct: 229 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFD 272 >gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 279 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 20/284 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 2 MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG P Sbjct: 62 VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LDW+ +PLAR+ D + HL L +P SMGNPHA FF+ DD+ D Sbjct: 122 ALDWRDVPLARAADTL-----------HLPLAGDPAAASMGNPHATFFL-DDMLDLDPVV 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 170 AGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 229 Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLD 280 R +V M GG L + W + HV MTG A + G D Sbjct: 230 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFD 273 >gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] Length = 286 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 108/278 (38%), Positives = 150/278 (53%), Gaps = 21/278 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 +M G GN+ILV+D+RG + A++ FDQ+M +HD ++ DAF+RI N Sbjct: 12 RMNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNV 71 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGNG RCV + +R ++ T + + + +VDMG P LDW+ Sbjct: 72 DGSLSGACGNGARCVA-YALARDGKERLRLATDAARIETRREAETVFTVDMGRPRLDWRE 130 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDLYHYDLA 181 IPL+R D + L P VSMGNPHA+FFV D L L Sbjct: 131 IPLSREAD-----------TRTVALEPPVAGAPTQFSAVSMGNPHAVFFVPDALA-TPLE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP+F + N+S A++ + + LR WERG G T ACGSAACA++VA+ Sbjct: 179 TLGPKLEHHPLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGF 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V++ GG L IEW D++HV MTG + E+E L Sbjct: 239 TERRARVRLPGGDLHIEWRDDDHVMMTGPVEFEFETML 276 >gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] Length = 281 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 15/277 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + + F KM G+GN +V+D RG +T+ + A++ FDQ+ +I D DA D Sbjct: 16 QTFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVISDTPDA--D 73 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RC+ R + + +++ T T RG L A + G SV+MG Sbjct: 74 LHLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMG 133 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW IPLA D + P++ +P MGNPH FFV DD DLA Sbjct: 134 QPQLDWHEIPLAEQIDTLQL------PIDG----SPTATGMGNPHCTFFV-DDAEAVDLA 182 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP+F + N+ A + + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 183 MRGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGL 242 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R V++ + GG L I+W D+ ++MTG ++G+ Sbjct: 243 TGRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQ 278 >gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] Length = 299 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 160/299 (53%), Gaps = 27/299 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQD 57 M + +M G GN +V+ + T D + AL+ D T FDQ++ + + Sbjct: 5 MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALA-DPATGLGGFDQLIGVEPSET 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE--NRDGS 115 A DAF+R+ N DGS V++CGN +RCV L ++ +T+ G A+ R GS Sbjct: 64 A--DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGS 121 Query: 116 ------------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 ++VDMG P LDW +PL+ D + +GP++ L P VSMG Sbjct: 122 GDPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMG 180 Query: 164 NPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 NPH +FF + DD + + G+L+ HP+F EGVN+ A V + + + LR WERG GL Sbjct: 181 NPHVVFFTDRLDDAF---VRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGL 237 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++VAS T+R +V + GG L I+W + + HVFMTG + E G L Sbjct: 238 TLACGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296 >gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] Length = 277 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/274 (39%), Positives = 140/274 (51%), Gaps = 10/274 (3%) Query: 8 FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +V+D R D + A DQI+LI D AF+RI Sbjct: 7 FLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--PDDGAAAFMRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGSE +CGN RCV L + T G+L A+ + VDMG P L Sbjct: 65 LNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKLG 124 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA D + R +GPV +NP SMGNPHA FFV DDL H + + G Sbjct: 125 WEDIPLAEPADTLSL-RLALGPV-----QNPAACSMGNPHATFFV-DDLTHLQIETIGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 178 LEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARRA 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 238 EIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] Length = 281 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 155/275 (56%), Gaps = 9/275 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 + +M G GN ++D RG ++++A+ ++ N DQ++ + + D F+RI Sbjct: 3 YYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSANA--DQVVSLENSMRG--DIFMRIW 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE--NRDGSISVDMGEPIL 125 N GSEV +CGN RCV + R + ET G+L+A N D ISVDMG P+L Sbjct: 59 NNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSPLL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA D D IGP++ +L+ P V+MGNPH +FFV D+L D+ G Sbjct: 119 KWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFV-DELDAVDVVGIGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ H MF E N+ A+V + + LR WER GLT ACG+ ACA+VVA NR+ Sbjct: 177 LIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLNRS 236 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V + GG L I+W + ++HV MTG + E + ++ Sbjct: 237 CTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEI 271 >gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45] gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45] Length = 279 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 150/278 (53%), Gaps = 16/278 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G+GN +V+D R +T + A++ FDQ+ LI + + D Sbjct: 8 SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALI---EPGAGD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS +CGN RC+ R+L + R T T RG L+A++ G SV+MG Sbjct: 65 ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW IPLAR D ++ P++ P MGNPH FFVED DL Sbjct: 125 QPQLDWHEIPLAREMDTLEL------PIDG----APTATGMGNPHCTFFVED-AEAVDLT 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 SFG + HP++ E N+ +A + + + +R WERG GLT A GS++CA+ VA+ Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V++++ GG L ++W ++ V+MTG ++G Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF 270 >gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] Length = 277 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/276 (38%), Positives = 149/276 (53%), Gaps = 12/276 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G+GN +V++ R T+ + A++ D T DQ++ + + A DA +R Sbjct: 9 FLKMNGLGNDFVVVETRSAPFEPTAAQVRAIA-DRATGIGCDQLIAVDPAEGA--DAHVR 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG EV +CGNG RCV L + ET G LVA + +SVDMG P L Sbjct: 66 FWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSVDMGPPRL 125 Query: 126 DWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +W IPLA D +D +H + + P VSMGNPH +FFV D A Sbjct: 126 EWNEIPLAEPHDTRALDVVLYH----HADLMAPPGCVSMGNPHVVFFVPD-AEQAPAAEA 180 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + HP+F E VN+ A+V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 181 GPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASRRGLIG 240 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R ++++ GG L +EW + HV MTG A +++G+L Sbjct: 241 RHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276 >gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] Length = 293 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/282 (40%), Positives = 158/282 (56%), Gaps = 10/282 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D+R + +DAI D DQ++ I + D F+ Sbjct: 8 FLKMNGLGNDFVVLDLR-REPFVLTDAIARAIADREKGIGCDQLITIEPARQGG-DVFMG 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG V++CGN RC+ + + + + T ET+ G VA I+VDMG P L Sbjct: 66 IRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVDMGAPRL 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPL+ F IGP+ + +P VV++GNPHA+FFVE D+ DL G Sbjct: 126 DWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAIDLERSGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+S+A+V S + +RTWERG GLT ACG+AACA+ VA+ KT R Sbjct: 185 MLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRRRKTERK 244 Query: 246 VSVKMLGGGLLIEW--HDNN---HVFMTGEAKKEWEGKLDIK 282 ++V + GG L +EW D N HV MTG ++EG LD + Sbjct: 245 ITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286 >gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] Length = 282 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/272 (38%), Positives = 151/272 (55%), Gaps = 9/272 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDASVDAFIRIIN 68 M+GIGN +++D+RG + DA L+ + DQ++ L+ + + A+ + I N Sbjct: 17 MDGIGNAFIIVDLRG-GGTLGEDAARGLAEAAEGVRIDQVIGLVAEGEGAA----MTIFN 71 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ L F T G + A D ++VDMG P L W+ Sbjct: 72 RDGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQ 131 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA + + +GP+++ L P VSMGNPH +FFVED + L FG L+ Sbjct: 132 DIPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVED-VAAQRLDRFGPLIE 190 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP+F EG N+S+A V + LRTWERG GLT ACG+AACA++V++ +T R V Sbjct: 191 NHPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADV 250 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + GG L I W + ++HV MTG+ + G+L Sbjct: 251 TLPGGTLDISWREADDHVLMTGDIRALRTGRL 282 >gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] Length = 279 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 111/276 (40%), Positives = 150/276 (54%), Gaps = 10/276 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRI 66 F KM G GN +VID T D I AL+ + FDQ++ I + A DAF+R+ Sbjct: 8 FIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA--DAFMRV 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS V++CGN +RCV L T +T G A D ++VDMG P LD Sbjct: 66 WNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVDMGRPRLD 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHYDLASFG 184 W +PLA D + +GP++ L P VSMGNPH +FF +DD + + G Sbjct: 126 WTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQDDGF---VTGSG 181 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +L+ HP+F EGVN+ A V + + LR WERG GLT ACG+ ACA+ VA+ T+R Sbjct: 182 SLVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARRGLTDR 241 Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V + GG L+I+W +HV MTG + E G L Sbjct: 242 KATVVVDGGELVIDWDPATDHVLMTGPVEIERTGAL 277 >gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] Length = 276 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 143/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D R ++ I ALS DQ + + + +A D F Sbjct: 1 MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITL-ERPEAGADVF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSE ++CGN RCV L + R T+RG L + G+I DMG P Sbjct: 60 MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W+ +PLA + D H+ P++ + +P SMGNPHA FFVE L D + Sbjct: 120 SLAWQEVPLAEAMDTT-----HL-PIDLGAVADPAACSMGNPHATFFVE-TLEGLDWQAL 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+ + N+ A V S E + L WERG G T ACGS ACA++V + Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 R + + GG L +EW +NHV M G + G+ D T Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273 >gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] Length = 269 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/275 (38%), Positives = 148/275 (53%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R +++ AL+ DQ++L+ + A D + Sbjct: 3 IPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DVRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DG EV++CGN R V +L + ET+ GI+ A + D ISV MG P Sbjct: 61 RIFNPDGGEVEACGNASRAVGLYLGGDKR-----IETLGGIIAASTS-DTGISVAMGRPR 114 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA D + PV L P V++GNPH IFFV D + DLA G Sbjct: 115 FGWDEIPLAYPMDTLTM------PVGWEDLVEPVAVNVGNPHVIFFVPDT-HSVDLARLG 167 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ P+F +N+++A +T ++LDLR WER GLT ACG+ ACAS +A+ T R Sbjct: 168 PLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLTGR 227 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V + GG L+IEW D + + MTG A +EG Sbjct: 228 RVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262 >gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] Length = 281 Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 152/279 (54%), Gaps = 19/279 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDAS 59 SS + F KM G+GN +V+D RG + D A++ D FDQ+ ++ + DA Sbjct: 15 SSFLPFMKMHGLGNDFVVVDERGITPRV--DKAVAVAIADRHRGVGFDQLAVMSETPDA- 71 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DGS+ +CGN RC+ R + + + T +T RGIL AK+ +G SV+ Sbjct: 72 -DVRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVN 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+P LDW+ +PLA + D ++ P+ P MGNPH FFV D D Sbjct: 131 MGQPQLDWQHVPLAHAMDTLEL------PIKGA----PTATGMGNPHCTFFVYD-AEAID 179 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA+ G L HP++ E N+ A + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 180 LATKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARR 239 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T+R V++ + GG L I W D+ V+MTG ++G+ Sbjct: 240 GLTDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQ 277 >gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] Length = 274 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 140/279 (50%), Gaps = 17/279 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62 M F KM G+GN +V+D R ++T I AL D +T DQ + + D Sbjct: 2 MTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALC-DRHTGIGCDQFVTLRPACAEGADV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+R N DGSE +CGN RCV + R +T G+L A R G ++VDMG Sbjct: 61 FVRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLA 181 P W +PLA + D + HL + +P VSMGNPHA FF+ D Sbjct: 121 PAQGWADVPLAEAMDTL-----------HLPMAGDPAAVSMGNPHATFFLPAP-DGMDPC 168 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP+F + N+ A VTS S+ LR WERG GLT ACGS ACA+VV + Sbjct: 169 VAGPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGL 228 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 +R +V+M GG L I W D+ HV MTG A + G Sbjct: 229 VDRTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTF 267 >gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31] gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31] Length = 289 Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 106/283 (37%), Positives = 153/283 (54%), Gaps = 9/283 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-------FDQIMLIHDFQDASV 60 F KM G+GN +VI+ + T++ I A++ N DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A++R N DG E +CGNG RCV L ++ S F+T+ G L K D ++VDM Sbjct: 65 SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA D + + +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ HP+F EGVN+ A + + + + L+ WERG GLTAACG+ ACA+ VA+ Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 T+R V+ G L IEW + + HV MTG E+ GKL K Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKLPEK 286 >gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] Length = 284 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/277 (37%), Positives = 145/277 (52%), Gaps = 18/277 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G+GN +V+D R H +D I A++ +DQ+ +I DA D Sbjct: 20 PSRLPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGAADA--D 77 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS+ +CGN RC+ L R T RG L A E G ++V+MG Sbjct: 78 ARLTFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAA-ERHGGVVAVNMG 136 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDL 180 P DW+ +PLAR D + HL + +P MGNPH FFVED DL Sbjct: 137 APSTDWQGVPLAREVDTL-----------HLPIPGDPVATGMGNPHCTFFVED-AESVDL 184 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ASFG HP+F E N+ +A+V + +R WERGVG+T A GS++CA+ VA+ Sbjct: 185 ASFGAEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRG 244 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 T R V+V + GG L I+W D+ V+M G ++G Sbjct: 245 LTERRVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDG 280 >gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] Length = 284 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/275 (37%), Positives = 149/275 (54%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST--DDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+ + T + I A++ D DQ++ I + A++R Sbjct: 5 FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E +CGNG RCV L + F+T+ G L + ++VDMG P L Sbjct: 65 FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPLA + D R +GP++ ++ P VSMGNPH +FFV+ + G+ Sbjct: 125 EWSQIPLAEAMDTA-RVELQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F EGVN+ A V S + + L+ WERG GLTAACG+ ACA+ VA+ T+R Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243 Query: 246 VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 V+ G L IEW +++ HV MTG ++ GKL Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278 >gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37] gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37] Length = 279 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 152/287 (52%), Gaps = 18/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 +++ + F KM G+GN +VID R +T + A+ FDQ+ LI +A Sbjct: 8 RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPGGNA-- 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + +N DGS +CGN RC+ R L + + T G L A + +G SV+M Sbjct: 66 DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+LDW+ IPLA D + H+ P++ +P SMGNPH FFV D DL Sbjct: 126 GPPVLDWQNIPLASEVDTL-----HL-PID----GDPVATSMGNPHCTFFVAD-AEAVDL 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG + HP++ + N+ +A + + L +R WERG GLT A GS++CA+ VA+ Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 T RAV + + GG L ++W ++ V+MTG + G L T +W+ Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277 >gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] Length = 266 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R +T A++ DQ+++I D DA V Sbjct: 1 MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDADVS-- 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 ++I N DGSEV++CGN RCV F+ T T G+L A+ DG SVDMG P Sbjct: 59 MQIFNADGSEVEACGNATRCVPLFIG-----HDVTIRTRAGLLDARLI-DGGASVDMGAP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPLA + D + P + L P V++GNPH IFFV DDL D A Sbjct: 113 RFDWNAIPLAYAMDTLTM------PASWEDLPAPAAVNVGNPHVIFFV-DDLDAVDTARL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ + P+F + VN++ A+V + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I+W + MTG A ++G+ D Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262 >gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] Length = 277 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + +D C NI + + HF D ++LI + D Sbjct: 3 FTKMQGLGNDYIYVD---CTKNIIDNPSVVSKKVSDRHFGIGSDGLVLI--MKSDIADFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV +++ +K+ T ET+ GI L ++N+ + Sbjct: 58 MRMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ K IP+ D+ + + N+ VSMGNPHAI +V DD Sbjct: 118 VDMGEPILESKQIPVDSEKDRFISESVEVDGYNYKVT----AVSMGNPHAITYV-DDTAS 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G + H +F + +N V +L +R WERG G T ACG+ A A +VAS Sbjct: 173 FPLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I Sbjct: 233 LNGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277 >gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] Length = 280 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 153/284 (53%), Gaps = 17/284 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID R ++T + + AL+ DQ + I + V AF+ + Sbjct: 8 FLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGGV-AFMGL 66 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG V+SCGN RCV R L + +S ET+ G++ A+ I VDMG L Sbjct: 67 RNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVDMGPARLT 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA + D + + +GP L +P VSMGNPHA+FFV DD DLA++G L Sbjct: 127 WQEIPLAGAADTLHIE-LSVGP-----LSDPCAVSMGNPHAVFFV-DDADAIDLATWGPL 179 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTN 243 + H +F N+ + + L +R WERGVG+T ACG+ ACAS VA+ G + Sbjct: 180 IEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRRGLI--AG 237 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKW 286 R V + GG L I W +++ HV MTG A + G LD G W Sbjct: 238 RTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279 >gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] Length = 278 Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 104/274 (37%), Positives = 148/274 (54%), Gaps = 18/274 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID RG +T AL + FDQ+ I D + D + Sbjct: 12 FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIRD--GVTSDVILDF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RCV FL + + T RG+L AK + D +S++MG P LD Sbjct: 70 WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKWSGD-LVSINMGLPQLD 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ +PLAR PV+HL + +P V MGNPH +FFV DD+ D A G Sbjct: 129 WQDVPLARDV-----------PVDHLPIDGDPVAVGMGNPHCVFFV-DDIADVDPAIAGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H +F E N+ A+V S + + +R WERG G+T ACGS ACA+ VA+ T++ Sbjct: 177 PIENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKC 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V +++ GG L ++W D+ V+MTG ++ +L Sbjct: 237 VRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARL 269 >gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] Length = 277 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 18/280 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 Q+ + F KM G+GN +V+D R N++ A+ FDQ+ +I + Sbjct: 5 QTPGLPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAG 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + N DGS +CGN RC+ RFL R S T RG L AK+ +G SV+M Sbjct: 62 DAQLTFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 G P L W +PLAR D + HL + +P MGNPH FFV+D + D Sbjct: 122 GHPQLKWDEVPLAREMDTL-----------HLPIEGDPVAAGMGNPHCTFFVKD-VEAVD 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L+ G P+F E N+ +A++ + +R WERGVG+T A GS++CA+ VA+ Sbjct: 170 LSDIGPRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARR 229 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T RAV + + GG L I+W D+ V+MTG + G Sbjct: 230 GLTGRAVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTF 268 >gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601] gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601] Length = 279 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 143/275 (52%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T A++ FDQ+ LI + DA + Sbjct: 11 LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALI---ETGEGDARL 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T T RG L A++ DG SV+MG P Sbjct: 68 TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D + P+ P MGNPH FFVE+ DL +FG Sbjct: 128 LDWQDIPLASEMDTLAL------PIEG----TPVATGMGNPHCTFFVEN-AEAIDLEAFG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A + + L +R WERGVG+T + GS++CA+ VA+ T R Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V++++ GG L I+W D+ V+MTG ++G Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSF 270 >gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] Length = 282 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 158/293 (53%), Gaps = 33/293 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VI+ + + A+ D HF D ++++ +D +D F Sbjct: 3 FTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDR-HFGIGGDGLVIVG--KDRELDVF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE + CGN +RCV +F+ R + + T+ G ++ K + Sbjct: 60 MRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 VDMGEPIL+ LIP+ S K+ RF I VSMGNPH + F Sbjct: 120 VDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRI-----------TAVSMGNPHCVVF 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D+ ++ +G +L HP+F N+ A++ ++ +R WERG G T ACG+ AC Sbjct: 169 V-DEFSSVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 A++VAS T R +V++ GG L+IEW DNNHV+MTGEAK+ + G++D++ Sbjct: 228 ATLVASYLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280 >gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] Length = 266 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F+ + ET G+L AK DG SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLFVG-----RDVLIETKAGLLDAKA-VDGGASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPLA + D + PV+ L P V++GNPH IFF+ DDL + Sbjct: 113 RLEWDAIPLAYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFL-DDLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] Length = 269 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 150/278 (53%), Gaps = 19/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62 V F KM G+GN +++D R +T+ AL+ D T DQ++L+ S D Sbjct: 3 VSFTKMHGLGNDFIMLDARAESLPPMTAATARALA-DRKTGIGCDQVILLEPSD--SADF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG EV++CGN R V + + ++ ET G+ +A G VDMG Sbjct: 60 RMRIFNADGGEVEACGNASRAV-----ALLHGEAANVETSGGV-IAIAPASGGARVDMGV 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P DW+ IPLA + D + PV L P V++GNPH +FFV DD L + Sbjct: 114 PRFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFV-DDADAVPLDT 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + P+F E +N++IA +T ++L L WERGVGLT ACG+ ACA+ +A+ T Sbjct: 167 MGPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGLT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V+V + GG L IEW ++H+ MTG A + + G D Sbjct: 227 GRKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264 >gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4] gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4] Length = 279 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 12/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ S+ + ++ T G + + RDGS++V+ Sbjct: 59 FHYRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVN 118 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P+L+ IP A+ +K + + FL VSMGNPH + V DD+ + Sbjct: 119 MGIPVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCG--AVSMGNPHCVLEV-DDVANA 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G+LL KH F +GVN+ +V + LR +ERG T ACGS ACA+V Sbjct: 176 DVERIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 K R V V + GG L I W + ++MTG A+ ++G++ Sbjct: 236 QGKLARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQIQ 278 >gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] Length = 279 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 158/288 (54%), Gaps = 20/288 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61 M++F KM G+GN +V+ + SDA + L+ F I L++ A D Sbjct: 1 MMEFTKMHGLGNDFVVVY---GERELPSDA-SELAVKLCNRFFGIGADGLVYILPSAKAD 56 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDG 114 +RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + Sbjct: 57 FMMRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVS 116 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ VDMGEP+L+ +P + + + F VSMGNPH + +V DD Sbjct: 117 SVRVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRFT----AVSMGNPHCVIYV-DD 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 ++DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V Sbjct: 172 AVNFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLV 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +S T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 232 SSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279 >gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] Length = 280 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +++D R IT + FDQ+ +I Q DA + Sbjct: 12 LPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIEQGQ---ADAHL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + + + T RG L+A++ DG S++MG+P Sbjct: 69 VFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA + ++ P+ P MGNPH FFV D L FG Sbjct: 129 LDWQEIPLAEDVNTLEL------PIEG----GPTATGMGNPHCTFFVVD-AEAIPLEEFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 178 ARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG + I+W D+ V+MTG G L Sbjct: 238 EVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTL 271 >gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] Length = 286 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 158/288 (54%), Gaps = 20/288 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61 M++F KM G+GN +V+ + SDA + L+ F I L++ A D Sbjct: 8 MMEFTKMHGLGNDFVVVY---GERELPSDA-SELAVKLCNRFFGIGADGLVYILPSAKAD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDG 114 +RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + Sbjct: 64 FMMRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVS 123 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ VDMGEP+L+ +P + + + F VSMGNPH + +V DD Sbjct: 124 SVRVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRFT----AVSMGNPHCVIYV-DD 178 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 ++DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V Sbjct: 179 AVNFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLV 238 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +S T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 239 SSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286 >gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] Length = 275 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 16/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R ++T+ AL+ DQ++++ A D + Sbjct: 9 IPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA--DVRM 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DGSEV++CGN R V L + ET+ G L+ E R +SVDMG P Sbjct: 67 RIFNNDGSEVEACGNASRAVGLLLGG-----TQFIETLGG-LIRSEARPDGVSVDMGAPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IP++ + D ++ PV L NP V++GNPH IFFV DD DLA G Sbjct: 121 LRWDEIPVSYAMDTLEM------PVGWEDLENPVGVNVGNPHVIFFV-DDADAVDLARLG 173 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ P+F E +N+++A V + L LR WERG GLT ACG+ ACA+ VA+ T R Sbjct: 174 PLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRKLTGR 233 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + + GG L I W + + MTG A +EG + Sbjct: 234 KVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269 >gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] Length = 266 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F+ + ET G+L AK DG SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLFIG-----RDVLIETKAGLLDAKA-VDGGASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPL+ + D + PV+ L P V++GNPH IFFV DDL + Sbjct: 113 RLEWDAIPLSYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFV-DDLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2] gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2] Length = 279 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/274 (37%), Positives = 144/274 (52%), Gaps = 17/274 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID RG +T+ A+ D + FDQ+ I D A D + Sbjct: 12 FMKMHGLGNDFVVIDSRG-RGAVTTPALARALGDRHRGVGFDQLAEIRD--SAEADFALD 68 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RCV F+ + + T T RG L A DG +SV+MG P L Sbjct: 69 FWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQL 128 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW +PLAR D + H+ P++ +P V MGNPH +FFV + ++A G Sbjct: 129 DWAEVPLARPADTL-----HL-PISG----DPVAVGMGNPHCVFFV-GNAETVNVADLGA 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L P+F + N+ A +T + L +R WERG G+T ACGS ACA+ VA+ T R Sbjct: 178 LFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGRK 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V++ + GG L I+W + V+MTG ++ L Sbjct: 238 VTLDLDGGALEIDWRSDG-VWMTGPTAHVFDAML 270 >gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] Length = 281 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 148/285 (51%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + S AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLP-GTANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L S DK+ + L VSMGNPH I FV+D ++ Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVKD-VWG 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + NN ++MTG A+ + G ++ Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281 >gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] Length = 263 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 8/271 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN L++D R +++ I L+ +N FDQ+++I D++ + I N D Sbjct: 1 MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G E ++CGNG RCV FL K K + T GIL + +N + +I++DMGEPI DW+ I Sbjct: 59 GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+ ++MD I ++ + + +S+GNPH IFF +D+ L G + H Sbjct: 119 PLS---EEMDPSNVCITLKDNSSF-DGYALSVGNPHIIFF--NDIETDKLKIIGPEIENH 172 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F + N++ A++ ++ + WERG GLT ACG+ ACA+ VAS + T R V++ Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L I+W NN + M+G E + I Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263 >gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035] gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035] Length = 277 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/266 (37%), Positives = 138/266 (51%), Gaps = 16/266 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D RG +T I A++ FDQ+ +I DA + Sbjct: 9 LPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + T RG LVA + G SV+MG+P Sbjct: 66 TFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA + D ++ P+ P MGNPH FFV D LA FG Sbjct: 126 LDWAEIPLAEAMDTLEL------PIEG----GPVATGMGNPHCTFFVAD-AEAVPLAQFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270 AV V + GG + ++W ++ V+MTGE Sbjct: 235 AVRVDLDGGTIHVDWREDG-VWMTGE 259 >gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] Length = 278 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 141/282 (50%), Gaps = 16/282 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61 S + F KM G+GN +V+D R H S+ D +DQ + I ++ Sbjct: 2 SGLAFTKMHGLGNDFVVVDGR-VHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A++ I N DG+E Q+CGNG RCV L + ETI G L+ + DG ++VDMG Sbjct: 60 AYMAIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMG 119 Query: 122 EPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 LDW+ IPLA D + + GP V+MGNPHA+FFV D Sbjct: 120 PANLDWRAIPLASDTDTLSVTVPEAGTFGPAT--------AVNMGNPHAVFFVPD-AEAV 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL++ G + +F E N+ V + + L +R WER G+T ACGS ACA++VA+ Sbjct: 171 DLSTVGPRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVR 230 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R +V + GG L I W + HV MTG + G LD Sbjct: 231 RGLTERRATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272 >gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] Length = 275 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 139/267 (52%), Gaps = 14/267 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62 M+ F KM G+GN +VID R IT ++ FDQ+ +I ++ AS DA Sbjct: 1 MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + + + T RG L AK+ +G SV+MG Sbjct: 61 HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ D ++ P+ P MGNPH FFVED L Sbjct: 121 PQLLWDEIPLSEEMDTLEL------PIEGA----PTATGMGNPHCTFFVEDAEL-IPLEE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ IA V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269 R V + + GG L I+W ++ V+MTG Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTG 255 >gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] Length = 271 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 144/271 (53%), Gaps = 15/271 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D RG + S A+ FDQ+ ++ + DA V + Sbjct: 11 FMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVLSNTDDADVQ--LTF 68 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RC+ L + ++ T +T RG+L A + G SV+M P+LD Sbjct: 69 YNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPLLD 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W +PLA + D + P++ P MGNPH FFV DD+ L +FG Sbjct: 129 WAYVPLAENVDTLAL------PID----GGPTATGMGNPHCTFFV-DDVEAVALETFGAR 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + HP+F E N+ +A++ + + +R WERGVG+T + GS++CA+ VA+ T +V Sbjct: 178 MEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGCSV 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + + GG L I+W D+ V+MTG ++G Sbjct: 238 QIDLDGGTLHIDWRDDG-VWMTGPTAHVFDG 267 >gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] Length = 276 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I+ L+ + FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R T G +V RDG I+V+MGE Sbjct: 63 RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IPL + + + I +H F VSMGNPH + V DD+ D+ Sbjct: 123 PIFEPAKIPLKAN---KQENIYIIRENDHTFFCG--AVSMGNPHCVLLV-DDVETADVEG 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V K Sbjct: 177 IGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 237 NKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200] Length = 275 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PIL+ LIP K + + FL SMGNPH + VED + Sbjct: 119 MGVPILEPSLIPFKA---KKPEKTYLLQTAQQTFLCG--AASMGNPHCVLDVED-VASAA 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 279 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 157/283 (55%), Gaps = 18/283 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN ++ID ++ AI+ + DQ++L++ Q A D + Sbjct: 4 INFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I N DGSEV+ CGNG+RC +++ R + ET+ GI+ K+ + + VDMG+ Sbjct: 62 KIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGE-LVQVDMGK 120 Query: 123 PILDWKLIPLA----RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P IP+ +FD M +N VSMGNPHA+ F++++ ++ Sbjct: 121 PEFHPNKIPVDVEGDSAFDLMLEVSGWHARIN--------CVSMGNPHAVIFLDEEPKNF 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G L+ HP+F + N+ A V + + +R WERG G T ACG+ ACA+ VA+ Sbjct: 173 AVTKYGPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMV 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 TN+ V+V +LGG LLIEW + HV+MTG A++ +EG + + Sbjct: 233 KEFTNKKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKV 275 >gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801] gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801] Length = 281 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + S AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLP-GTANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L S DK+ + L VSMGNPH I FV+D ++ Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVKD-VWG 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + +N ++MTG A+ + G ++ Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281 >gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] Length = 277 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +++D R IT + FDQ+ +I + DA + Sbjct: 9 LPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVI---VNGESDAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T T G L A++ DG SV+MG P Sbjct: 66 VFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGHPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA D ++ P+ P MGNPH FFVED L FG Sbjct: 126 LDWADIPLAEEVDTLEL------PIE----GGPVATGMGNPHCTFFVED-AEAIPLEEFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 ARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V +++ GG + I+W ++ V+MTG + G L Sbjct: 235 KVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTL 268 >gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] Length = 274 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 15/279 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +++D R ++T I ALS DQ +++ D F+R Sbjct: 5 FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDGADVFVRF 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG+E +CGN RCV + + +T G+L + DG I+VDMG P LD Sbjct: 65 FNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVDMGPPALD 124 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFL-RNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPL R D + HL L +P SMGNPHA F+ D D G Sbjct: 125 WRDIPLVREVDTL-----------HLPLWGDPAAASMGNPHATVFL-DVGDTTDPRVRGP 172 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E N+ A+V + + + LR WERG GLT ACGS ACA+VV + R Sbjct: 173 AMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVRRGLVGRT 232 Query: 246 VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 V+M GG L + W +++ HV M+G A +EG + + T Sbjct: 233 CVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271 >gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] Length = 265 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 16/276 (5%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G N ++ID R + NI I T DQ+++I + A D F Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 57 IHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181 WK IP+ + D + P+ L P V++GNPHA+FFV+ DD+ L Sbjct: 117 KFHWKDIPVLHACDTLYL------PIKTELLSYPVGVNIGNPHAVFFVDSIDDI---PLT 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + Sbjct: 168 KIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNY 227 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 TN ++ + GG LLI + D+N + M G + G Sbjct: 228 TNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 263 >gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H] gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H] Length = 257 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 141/273 (51%), Gaps = 22/273 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R + + I L DQ++L+ A D + Sbjct: 3 LSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVHV 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 R N DGSE +CGN RCV +F+ + T +T G+L ++ D +VDMG P Sbjct: 63 RFFNPDGSEAGACGNASRCVAKFVGG-----APTLQTAAGLLPTAQDGD-LFTVDMGTPR 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ +PL+R+ D + HL L + SMGNPHA F D + + + G Sbjct: 117 LDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLF--GDAFRAE--ALG 161 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L + P+F E N+ A++ S + LR WERG GLT ACGS ACA+VV + T R Sbjct: 162 PGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTER 221 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +V M GG L I W ++ HVFMTG A + G Sbjct: 222 TCTVTMDGGDLRITWREDGHVFMTGPAVTVFHG 254 >gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217] gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217] Length = 277 Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T I A++ FDQ+ +I DA + Sbjct: 9 LPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R+L + T RG LVA + G SV+MG+P Sbjct: 66 TFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA + D ++ P+ P MGNPH FFV D LA FG Sbjct: 126 LDWAEIPLAEAMDTLEL------PIEG----GPVATGMGNPHCTFFVA-DAEAVPLAQFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG + ++W ++ V+MTGE G L Sbjct: 235 RVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVL 268 >gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453] gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453] Length = 278 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 157/285 (55%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+ + ++ + A+ D ++ I + A D + Sbjct: 1 MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDGSIS 117 RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + S+ Sbjct: 59 RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP+L+ +P + + + F VSMGNPH + +V DD + Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRFT----AVSMGNPHCVIYV-DDAVN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F +N+ A V S + +D+R WERG G T ACG+ ACA++V+S Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW +N NHV+MTG A+ ++G L I Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278 >gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] Length = 268 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 103/277 (37%), Positives = 142/277 (51%), Gaps = 22/277 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFI 64 F KM G+GN +VID R +T +A++ D H DQ++L+ S D + Sbjct: 5 FTKMHGLGNDFVVIDARVAPVEMTPARAHAIA--DRRHGIGCDQLILLE--PSTSADVKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DG EV++CGN RCV + K ET+ G+L DG V +GEP+ Sbjct: 61 RIFNADGGEVEACGNATRCVATLIG-----KPAVIETLAGMLRVTPA-DGGAEVTLGEPV 114 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYDLASF 183 DW IPLA D D PV L + V++GNPH +FFV E D D Sbjct: 115 FDWDHIPLAMPMDTRDM------PVAWDELEHGAAVNVGNPHIVFFVPEADAVALD--QL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F E VN+++A + L LR WERGVGLT ACG+ ACA+ VA+ Sbjct: 167 GPRIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVR 226 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I W + M+G A + ++G+ D Sbjct: 227 SPVTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263 >gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 265 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 140/274 (51%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G N ++ID R + NI I T DQ+++I + A D F Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 57 IHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 WK IP+ D + P+ L P V++GNPHA+FFV D + L Sbjct: 117 KFHWKDIPVLHECDTLYL------PIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKI 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + TN Sbjct: 170 GPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ + GG LLI + D+N + M G + G Sbjct: 230 HHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 263 >gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 276 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + + L+ + FDQ++++ D Sbjct: 2 LIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +K+ ET +GI+ N+DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +L P F ++ + VN + + VSMGNPH + V DD+ + Sbjct: 122 AP----RLAPADIPFVAETQEAIYPIEVNGV-MYEISAVSMGNPHGVLVV-DDVNKAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP F E N+ +V LR +ERG G T ACG+ ACA+VVA Sbjct: 176 KLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V +K+ GG L I W H V MTG A + ++G++ I Sbjct: 236 LDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276 >gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] Length = 274 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 143/280 (51%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 V F KM G+GN +VID R + A D T DQ++L+ A DA Sbjct: 3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLE--PSAVADAR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCVV L S ET+ G+L + + DG +SV++GEP Sbjct: 61 MRIFNADGSEVEACGNATRCVVSLLGG-----SARIETVAGLLEGR-SADGQVSVELGEP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYDLAS 182 DW IPLA + D PV L P ++GNPH +FFV E D D Sbjct: 115 RFDWDAIPLAYAMDT------RAMPVAWEELEAPMAANVGNPHVVFFVPETDAVALD--R 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + P+F +N+++A V ++ LR WERGVGLT ACG+ ACA+ V++ Sbjct: 167 LGPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGLV 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V + GG L I+W + MTG A + + D+ Sbjct: 227 DSPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLS 266 >gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1] gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1] Length = 275 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVD--GITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+L+ IP K + + FL SMGNPH + VED + + + Sbjct: 119 MGVPVLEPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVED-VANAN 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 233 GKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] Length = 277 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/276 (36%), Positives = 140/276 (50%), Gaps = 17/276 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 + F KM G+GN +V D R D + A+ L D + DQ+ LI + DA Sbjct: 9 LPFMKMHGLGNDFVVFDGR-ARDIAITPALARLVADRHRGIGCDQLALI--TAEGPGDAH 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS +CGN RC+ R L + R + T RG L A++ G SV+MG P Sbjct: 66 LTFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGAP 125 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LDW IPLA + D ++ P+ P MGNPH FFVED LA F Sbjct: 126 QLDWAEIPLAEAMDTLEL------PIEG----GPTATGMGNPHCTFFVED-AERVALAEF 174 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G HP+F E N+ +A + + L +R WERGVG T A GS++CA+ VA+ T Sbjct: 175 GPRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLTG 234 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V++ + GG L I+W ++ V+MTG +G L Sbjct: 235 RCVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVL 269 >gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7] gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7] Length = 275 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+LD IP K + + FL SMGNPH + VED + + + Sbjct: 119 MGVPVLDPSQIPFKA---KKAEKTYLLQTSQQTFLCG--AASMGNPHCVLDVED-VANAN 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium HF4000_APKG2098] Length = 275 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 150/262 (57%), Gaps = 4/262 (1%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM+G+GN ++ D R ++T + I +S ++ DQ++ I +D + +AF++ N Sbjct: 8 KMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYNS 65 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DG E+ +CGNG RCV L K + T GIL A+ N +S++MGEP +W Sbjct: 66 DGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWNK 125 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL++ D + + I ++ R F +S+GNPH IFFVED ++L G + Sbjct: 126 IPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVED-FNQFNLKEIGPKIEN 183 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 + F E N+++A + + + ++ WERGVGLT ACG+AACA+ V+ L + R V ++ Sbjct: 184 YSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDIE 243 Query: 250 MLGGGLLIEWHDNNHVFMTGEA 271 + G L I+W +N+++MTG+ Sbjct: 244 FVEGLLNIDWKKDNNIYMTGKV 265 >gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] Length = 293 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 144/283 (50%), Gaps = 18/283 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ + FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +P + IP ++ +H+ PV +V +MGNPHA+ V DD+ Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPVQL------YVANMGNPHAVIKV-DDILT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 D+ G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V + Sbjct: 175 ADVEKLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGI 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G L + + ++ GG LLI W V MTG +EG Sbjct: 235 REGWLDE-GEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEG 276 >gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3] gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3] Length = 275 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+LD IP K + + FL SMGNPH + VED + + + Sbjct: 119 MGVPVLDPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVED-VANAN 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 281 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 143/278 (51%), Gaps = 16/278 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S +++F KM G N ++ID R + NI I T DQ+++I + A D Sbjct: 15 SHVINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--D 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 FI I N DGS+V+ CGN RCV L++ K + T E IL I V+MG Sbjct: 71 CFIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMG 130 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179 P WK IP+ D + P+ L P V++GNPHA+FFV+ DD+ Sbjct: 131 YPKFHWKDIPVLHECDTLYL------PIKTELLSYPVGVNIGNPHAVFFVDSIDDI---P 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ Sbjct: 182 LTKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + TN ++ + GG LLI + D+N + M G + G Sbjct: 242 NYTNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 279 >gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] Length = 289 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 18/276 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +++D RG T A+ FDQ+ I D ++ D + Sbjct: 21 LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGEN--CDIAL 78 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV + + T T RG+L E R ++ V+MG P+ Sbjct: 79 DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRG-EMRGEAVWVNMGPPV 137 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LDW +PLAR D + HL + +P V MGNPHA+FFVED + D+A+ Sbjct: 138 LDWAQVPLAREVDLL-----------HLPIAGDPCGVGMGNPHAVFFVED-IDAVDVAAR 185 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P++ E N+ +V S + + +R WERG G+T ACGS ACA VA+ T Sbjct: 186 GAEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTG 245 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V +++ GG L ++W D+ V+MTG + +EG+L Sbjct: 246 RHVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280 >gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 276 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ + FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R T G +V RDG ++V+MGE Sbjct: 63 RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL + + + I +H F VSMGNPH + V DD+ D+ Sbjct: 123 PEFEPSKIPLKAN---KQENIYIIRENDHTFFCG--AVSMGNPHCVLLV-DDIATTDVEG 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V K Sbjct: 177 IGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 237 NKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10] gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10] Length = 294 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 12/275 (4%) Query: 11 MEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 M G GNK ++ D+RG N+++D++ A++ H FDQ++++ D D S DAF+RI Sbjct: 28 MNGAGNKFILADVRGRAGVFNLSADSVKAMA---RAHPFDQLLVLED-SDTS-DAFMRIW 82 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DG EV +CGNG R + + + +T G+L+A++ S+SVDMGEP LDW Sbjct: 83 NSDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDW 142 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPL R D + D F + + + + P VSMGNPHA+FF+ D+ ++ + G ++ Sbjct: 143 TEIPLVRPMDTLQLD-FAV-EKDGVRIEAPGAVSMGNPHAVFFIR-DIANFPVTGLGPVV 199 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E VN A++ + LR WERG G+TAACG+ ACA++VA+ +R Sbjct: 200 EHAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAM 259 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + GG L +EW +NHV +TG + E +LDI Sbjct: 260 IHADGGDLSVEWRKSDNHVILTGPVEDEGPIELDI 294 >gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] Length = 280 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 143/277 (51%), Gaps = 16/277 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G+GN +V+D R +IT AL FDQ+ LI + + A Sbjct: 10 SGLPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTGVHLA 69 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+MG Sbjct: 70 FF---NADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGA 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW +PLAR D ++ P+ P MGNPH FFV DD+ D+A Sbjct: 127 PQLDWTEVPLAREMDTLEL------PIEG----TPTATGMGNPHCTFFV-DDVMQTDVAK 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H +F + N+ A +T +++ +R WERGVG+T A GS++CA VA+ T Sbjct: 176 LGAELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V V + GG L I+W ++ V+MTG + + G L Sbjct: 236 GRKVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTL 271 >gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB] gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB] Length = 292 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 159/293 (54%), Gaps = 31/293 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 +V F KM G+GN + I+ D + + +D HF D ++LI D + A Sbjct: 15 VVKFTKMHGLGNDYIYINAV-LEDIKNPNEFSKFVSD--RHFGIGSDGLVLILDSKIA-- 69 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--- 115 D +R+ N DGSE + CGN +RCV +F+ +K T ET+ G+ V + +G Sbjct: 70 DFKMRMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVV 129 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-----VVSMGNPHAIF 169 + VDMGEP L+ IP+ D++ + +N N + VSMGNPHA+ Sbjct: 130 LVKVDMGEPTLEALKIPVIS-------DKYPV--INETIDSNGYNFKFTCVSMGNPHAVT 180 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ED + +++L G L H F + N+ V + E+L +R WERG G T ACG+ A Sbjct: 181 YIED-VDNFELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGA 239 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA +V+S + R +VK+LGG L++EW + NNHV+MTG A K +EGK+ + Sbjct: 240 CAVLVSSVLNGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292 >gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] Length = 273 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 140/283 (49%), Gaps = 18/283 (6%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTHFDQIMLIHDFQD 57 M+ +M V F KM G+GN +V+D R + A D + DQ++L+ Sbjct: 1 MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLE--PS 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 S D +RI N DGSEV +CGN R V + ET G+L A + DG Sbjct: 59 GSADFRMRIFNHDGSEVGACGNATRAVALLHGVEAR-----IETAGGLLSASPS-DGGAR 112 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P DW IPLA D + PV L NP V++GNPH IFFVED Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTLSM------PVGWEMLENPGAVNVGNPHVIFFVED-TNA 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + K P+F E VN+++A + S + LR WERG GLT ACG+ ACA+ V + Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V+V + GG L I W + MTG A + + G + Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268 >gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3] Length = 276 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ FAKM G+GN +V+D+ +++++ I L D NT FDQ++L+ Q VD Sbjct: 2 LLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLG-DRNTGVGFDQLLLVETPQSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ + ++ +T G + K +D + VDM Sbjct: 61 RYRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP+L L+P H G + VVSMGNPHA+ V DD+ + Sbjct: 121 GEPVLLPSLVPFDAPAQAPSYRLEHNGQSYTIG-----VVSMGNPHAVIVV-DDVASAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +HP F N+ ++ + ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 VELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V+ ++ GG L I+W +H+ M G +EG++ + Sbjct: 235 LLGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276 >gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)] Length = 293 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 16/282 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +P + IP ++ +H+ G L++ N MGNPHA+ V DD+ Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPVQLYVAN-----MGNPHAVIKV-DDILTA 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VA 235 D+ G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V + Sbjct: 176 DVEKLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIR 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G L + + ++ GG LLI W V MTG +EG Sbjct: 236 EGWLDE-GEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEG 276 >gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] Length = 283 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 147/285 (51%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASV 60 + + F+KM G+GN +VID G DA + D FDQ++L+ V Sbjct: 2 TTLKFSKMHGLGNDFMVID--GTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDV 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DG EV+ CGNG RC V+F++ +++ ET RGI+ N +G I+V Sbjct: 60 DFRYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITV 119 Query: 119 DMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +MG+P + +P RS ++ + + VN L ++SMGNPHA+ VED Sbjct: 120 NMGQPQFAPQDVPFVLRSGEQAGEKSYIV--VNELDSAQMSLLSMGNPHAVMLVEDTA-S 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A +G L HP F VN+ +V + LR +ERG G T ACG+ ACA+VV SG Sbjct: 177 APVAEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVV-SG 235 Query: 238 C---LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V + GG L I W + V+MTG A +EG+L Sbjct: 236 VRWGLLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280 >gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] Length = 295 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 147/279 (52%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ + G + VDMG Sbjct: 62 YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ +H+ VN ++ +V +MGNPHA+ V DD+ D+ Sbjct: 122 KPKFEPSEIPFTPRATTKIQNAYHLD-VNGTPVQL-YVANMGNPHAVIKV-DDVLDADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238 S G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V + G Sbjct: 179 SLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREGW 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L + V ++ GG ++I+W V MTG +EG Sbjct: 239 LDE-GEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEG 276 >gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040] gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040] Length = 275 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 139/268 (51%), Gaps = 16/268 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--D 61 M+ F KM G+GN +VID R IT ++ FDQ+ +I DAS D Sbjct: 1 MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIAT-ADASTEAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS +CGN RC+ R+L + + S T RG+L+A + +G SV+MG Sbjct: 60 AHLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPLA + ++ P+ P MGNPH FFVED LA Sbjct: 120 APQLSWDEIPLAEELETLEL------PIEGA----PSATGMGNPHCTFFVEDAEV-IPLA 168 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 FG HP++ E N+ IA V L +R WERGVG+T A GS++CA+ VA+ Sbjct: 169 EFGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGL 228 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 T R V + + GG L I+W D+ V+MTG Sbjct: 229 TGRKVQIDLDGGTLWIDWRDDG-VWMTG 255 >gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] Length = 295 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 12/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ +R G + VDMG Sbjct: 62 YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +P + IP R+ K+ ++ +H+ VN ++ +V +MGNPHA+ V DD+ D+ Sbjct: 122 KPKFEPSEIPFTPRAITKI-QNAYHLD-VNGTPVQL-YVANMGNPHAVIKV-DDVLDADV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASG 237 + G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA+V + G Sbjct: 178 ETLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREG 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L + V ++ GG ++I+W V MTG +EG Sbjct: 238 WLDE-GEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEG 276 >gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] Length = 267 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 16/261 (6%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +V+D R +IT ++ FDQ+ +I DA + N Sbjct: 2 KMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFYN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R L + T RG+L+A++ +G SV+MGEP LDW+ Sbjct: 59 ADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDWQ 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA D ++ P+ P MGNPH FFV D+ LA FG Sbjct: 119 DIPLAEDVDTLEL------PIE----GAPTATGMGNPHCTFFV-DNAEVIPLAEFGARYE 167 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T+R V + Sbjct: 168 HHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQI 227 Query: 249 KMLGGGLLIEWHDNNHVFMTG 269 + GG L I+W + V+MTG Sbjct: 228 DLDGGTLWIDWRKDG-VWMTG 247 >gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] Length = 279 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F+K G+GN +++D R + +T D L + HF D ++ Q + Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLC---DRHFGIGADGVIFALPGQGGT- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118 D +RI N DGSE + CGNG+RC+ +FL ++ K++ T+ G++ + DG + V Sbjct: 59 DYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKV 118 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMGEP L +LIP LA + +K+ + VSMGNPH + FV DD+ Sbjct: 119 DMGEPQLLAELIPTTLAPAGEKVVDLPLAVAGQTWAVT----CVSMGNPHCLTFV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +L G L HP FS+ N +V + L +R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 SLNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + +R +V++ GG L IEW +N ++MTG A++ + G+ +I Sbjct: 234 VLTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279 >gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437] Length = 280 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 14/287 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F KM G+GN +V+ A D ++ + + D + Sbjct: 1 MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFL--LPSRAGDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118 RI+N DGSE + CGN +RCV ++ R+ +K ET G+ + DGS I V Sbjct: 59 RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL+ +P+A +++ IG + F VSMGNPHA+ FV DD + Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIGEESFRFT----AVSMGNPHAVIFV-DDAAAF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + ++G L HP+F N+ V S L++R WERGVG T ACG+ ACAS+VA+ Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 +R V++ GG L IEW + ++ V+MTG A+ +EG+ + +G Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWNEGSG 280 >gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] Length = 302 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%) Query: 6 VDFAKMEGIGNKILVIDMR--------------GCHDNITSDAINALST----------- 40 + F KM G+GN +V+D R + +DA AL Sbjct: 9 LPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQAIGH 68 Query: 41 -DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 69 RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125 Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 T RG L A++ +G SV+MG P L W IPLAR D ++ P++ P Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL------PIDGA----PTA 175 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 MGNPH FFV DD+ DLA FG + H ++ E N+ IA++ + + +R WERGV Sbjct: 176 TGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + G L Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293 >gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] Length = 302 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%) Query: 6 VDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALSTDDNTH--------------- 45 + F KM G+GN +V+D R DA + D T Sbjct: 9 LPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQAIGH 68 Query: 46 ------FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 69 RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125 Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 T RG L A++ +G SV+MG P L+W IPLAR D ++ P++ P Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL------PIDGA----PTA 175 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 MGNPH FFV DD+ DLA FG + H ++ E N+ IA++ + + +R WERGV Sbjct: 176 TGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + G L Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293 >gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010] gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010] Length = 281 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +VID +TS I LS DQ++L+ Q A D Sbjct: 1 MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + + ET G++ DGS++VDMG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +PI + IP + + ++ ++ + +SMGNPHA+ V DD+ + Sbjct: 121 KPIFEPAKIPF-----QAEEATTYMLTIDEHGKKEIAALSMGNPHAVMLV-DDVTVASVL 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F E VN ++ +S+ LR +ERG G T+ACG+ ACA+VV+ Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 N V+V + GG L I W D + V+MTG A+ ++G++ Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273 >gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] Length = 274 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 IANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V +LGG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] Length = 282 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 142/275 (51%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R ++ + AL+ FDQ+ +I +A DA + Sbjct: 12 LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPAPEA--DAHL 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + + T RG+L+A++ DG V+MG+P Sbjct: 70 TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W +PLA + D ++ P+ P MGNPH FFV D L +FG Sbjct: 130 TLWSEVPLAEAMDTLEL------PIEG----TPTATGMGNPHCTFFVAD-AEAIPLDTFG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + GG L I+W ++ V+MTG +EG+L Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRL 272 >gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] Length = 314 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 25/290 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F+KM G+GN +VID G + T ++ + ++ N HF DQ++L+ Q + D Sbjct: 32 LKFSKMHGLGNDFMVID--GINQVFTPNSAH-IAAWANRHFGIGFDQLLLVERAQTPAAD 88 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EVQ CGNG RC +F+ + + ET GI+ + +G ++VD Sbjct: 89 FRYRIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVD 148 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL---RNPFV----VSMGNPHAIFFVE 172 MG P + IP D + G + H + R P + VSMGNPHA+ V Sbjct: 149 MGAPRVLPDDIPFRLPADGSET----AGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRV- 203 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD +A G L +HP F E VN+ ++ + LR +ERG G T ACG+ ACA+ Sbjct: 204 DDTKTAPVAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAA 263 Query: 233 VVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VVA G L V V + GG L ++WH +HV MTGEA ++G+L Sbjct: 264 VVAGMRQGWL-AAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312 >gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 278 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN LV + DN++ AI D ++ I A D + Sbjct: 1 MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL--VAKENRDG---SIS 117 RIIN DG+E + CGN +RCV +++ + + S T ET+ + V + DG ++ Sbjct: 59 RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPILD IP + + + F VSMGNPH + +V DD + Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKFT----AVSMGNPHCVIYV-DDAPN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ ++G L HP F +N+ A VT+ + +++R WERG G T ACG+ ACA++V+S Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+RA + + GG L IEW + +NHV+MTG A+ ++G ++I Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278 >gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101] gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101] Length = 298 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ 56 + F KM G+GN +V+D R G +T A+ FDQ+ +I Sbjct: 22 LPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQLAVI---T 78 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + DA + N DGS +CGN RC+ RFL + S T RG L A++ D Sbjct: 79 TGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAAQDMGDRLT 138 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG+P LDW+ IPLA + + ++ P++ P MGNPH FFV D L Sbjct: 139 AVNMGQPQLDWQDIPLAHAMETLEL------PID----GAPTATGMGNPHCTFFVAD-LA 187 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG + HP++ E N+ IA++ + + +R WERGVG+T A GS++CA+ VA+ Sbjct: 188 AIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAA 247 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V + + GG L I+W ++ V+MTG + G L Sbjct: 248 ARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTL 289 >gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] Length = 284 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 140/267 (52%), Gaps = 16/267 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDAF 63 + F KM G+GN +V+D R ++T ++ FDQ+ LI + ++ DA Sbjct: 12 LPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPADAH 71 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS +CGN RCV R L + + T RG L+A ++ DG SV+MG+P Sbjct: 72 LLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMGQP 131 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLAS 182 L W +PLA D ++ P+ P MGNPH FFVE+ DL L Sbjct: 132 QLLWDQVPLAEEVDTLEL------PIE----GGPTATGMGNPHCTFFVENADLI--PLEE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 180 FGPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269 R V V + GG L I+W ++ V+MTG Sbjct: 240 GRKVQVDLDGGTLWIDWREDG-VWMTG 265 >gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] Length = 277 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 151/288 (52%), Gaps = 23/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN +V+D + + I LS FDQ++L+ D VD Sbjct: 2 ILKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEVQ CGNG RC VRF+ ++ T+ G+L K N D S++V+MG Sbjct: 62 YRIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNMG 121 Query: 122 EPILDWKLIPL-----ARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 P LD + +P + S++ + D IG VSMGNPHA+ V+D Sbjct: 122 VPQLDPEKLPFKAEAQSESYELCVKGFDAVTIG-----------AVSMGNPHAVINVKD- 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G+L+ KH F E VN+ ++ + ++LR +ERG G T ACG+ ACA+VV Sbjct: 170 VKTAPVHELGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVV 229 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A H+ V V + GG L I W N+ V M+G A +EG++ I Sbjct: 230 AGIVQHRLVSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQIVI 277 >gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] Length = 277 Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 137/273 (50%), Gaps = 17/273 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID R + +T AL FDQ+ +I + A D + Sbjct: 13 FLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAEGA--DFTLEF 70 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ +CGN RCV + + + T T RG L A+ DG +SV+MG PILD Sbjct: 71 WNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVNMGAPILD 130 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 IP+A P+ +P V MGNPH +FFVED D++ G Sbjct: 131 PAAIPVAAD------------PLALPLTGDPVAVGMGNPHCVFFVED-AETADVSGLGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + HP+F E N+ A + + L +R WERG G+T ACGS CA+ VA+ T R V Sbjct: 178 IEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLRGLTGRRV 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + GG L I+W ++ V+MTG + +L Sbjct: 238 IVDVDGGRLEIDWREDG-VWMTGPTALVFAAEL 269 >gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] Length = 279 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 26/294 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G+GN ++++ G +++I A + D HF D ++LI + D Sbjct: 1 MEFTKMHGLGNDFVMVN--GFNEDIADPNQLAEAICDR-HFGVGADGLVLILPSKQEEAD 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115 +RI N DGSE + CGN +RC ++L R ++ ET+ GI+V + +++ + Sbjct: 58 FRMRIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEA 117 Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG+P L IP+ + DK+ +++ + + VSMGNPH + FV DD Sbjct: 118 VQVDMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEIT----AVSMGNPHTVIFV-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G + +HP F E N+ V + + +R WERG G+T ACG+ AC S V Sbjct: 173 ADDFPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 AS TN+ V V +LGG L IEW +++HV+MTG A+ ++ G+WIK Sbjct: 233 ASILNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAE-------EVFVGEWIK 279 >gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] Length = 278 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 148/286 (51%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K +G+GN +++D R H S + + HF D ++ D + D Sbjct: 1 MEFTKYQGLGNDFILVDNR--HSTTPSLSPEEAVKLCDRHFGIGADGVIFALP-GDENSD 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ +G + Sbjct: 58 YTMRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVK 117 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L K IP L ++ +K+ +G + L VSMGNPH I FVED + Sbjct: 118 VDMGTPFLLAKEIPTTLTKAEEKVIDQSLEVGDQSWLVT----CVSMGNPHCITFVED-V 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 173 AKIPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 +R +V++ GG L IEW +N ++MTG A++ + G +D Sbjct: 233 GVLTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278 >gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11] gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11] Length = 281 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 138/267 (51%), Gaps = 16/267 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D R +IT ++ FDQ+ +I DA Sbjct: 10 TRLPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L T RG+L+A++ +G SV+MG+ Sbjct: 67 HLTFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQ 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ IPLA D ++ P+ P MGNPH FFVE+ LA Sbjct: 127 PQLDWQDIPLAEDVDTLEL------PIEG----TPTATGMGNPHCTFFVENAEV-IPLAE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269 V + + GG L ++W D+ V+MTG Sbjct: 236 GHKVRIDLDGGTLWVDWRDDG-VWMTG 261 >gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1] gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1] Length = 281 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID RG +T AL FDQ+ +I D+ V+ + Sbjct: 13 LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDSDVE--L 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + T T RG+L A + DG SV+MGEP+ Sbjct: 71 TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + W+ IPL + D ++ P++ P MGNPH FFVED DL + G Sbjct: 131 MGWRDIPLKGACDTLNL------PIDG----TPVATGMGNPHCTFFVED-ADAIDLETLG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +HP+F + N+ A V + L +R WERGVG+T A GS++CA V++ T R Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG + ++W + V+MTG + G+L Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGEL 273 >gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 276 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVDA 62 ++F KM G+GN +V H + + ++ L+ D F I L++ + D Sbjct: 1 MEFTKMHGLGNDFIVF---AGHQQLPEN-VSQLAIDLCNRFFGIGADGLVYILPSENADF 56 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGS 115 +RIIN DGSE + CGN +RCV +++ T ETI G+ L K+ + + Sbjct: 57 KMRIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVAT 116 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL+ +P D++ + F VSMGNPH + +V DD Sbjct: 117 VRVDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSFT----AVSMGNPHCVIYV-DDA 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++DL ++G L HPMF +N+ V S D+R WERG G T ACG+ ACA+VV+ Sbjct: 172 ANFDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVS 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 S T+R +V + GG L IEW + +NHV+MTG A + + G Sbjct: 232 SVLNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276 >gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681] gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus polymyxa E681] Length = 277 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 150/284 (52%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAF 63 ++F KM G+GN +V H ++ S A + HF L++ D Sbjct: 1 MEFTKMNGLGNDFIVWFG---HQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKADFC 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116 +RIIN DGSE + CGN +RC +++ R + R+ T ET+ G+ L + + Sbjct: 58 MRIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ IP ++ + G F VSMGNPH + +VED Sbjct: 118 KVDMGEPILEGLKIPTTLERTRVINEPIEAGGSGFCFT----AVSMGNPHCVIYVED-AP 172 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 173 SFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVAS 232 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG+L Sbjct: 233 VLNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276 >gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] Length = 267 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R + NI AI T DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIANRKT--GIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + H+ P+ L +P +++GNPHAIFFV D + L Sbjct: 117 KFHWTDIPTSQECDTL-----HL-PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V + GG LLI + +N + M G + G Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263 >gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] Length = 260 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 142/269 (52%), Gaps = 15/269 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +VID R +T + A++ FDQ+ +I DA DA + N Sbjct: 2 KMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFYN 59 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R++ + T T+RGIL+A + G S++MG+P L W+ Sbjct: 60 SDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTWQ 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLAR D P++ P MGNPH FFVED DLA+ G L+ Sbjct: 120 EIPLARDVD------LDALPID----GAPMATGMGNPHCTFFVED-AEEVDLAAMGALIE 168 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ N+ A + + L +R WERGVG+T A GS++CA+ VA+ T R V + Sbjct: 169 HHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVRI 228 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + GG + I+W N+ V+MTG + G Sbjct: 229 DLDGGTIHIDWR-NDGVWMTGPTAHVFSG 256 >gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] Length = 271 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 144/276 (52%), Gaps = 15/276 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S V F KM G+GN +VID R +T + A++ FDQ+ ++ DA D Sbjct: 6 PSGVPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMKKRADA--D 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG+ +CGN RC+ R + + T T RGIL+A++ G S++MG Sbjct: 64 VHLTFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W+ IPLAR D P+N P MGNPH FFVED DLA Sbjct: 124 LPQLTWQEIPLARDVD------LDALPIN----GAPMATGMGNPHCTFFVED-AEAIDLA 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L+ HP++ + N+ A + + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 173 AMGALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGL 232 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 T R+V + + GG + I+W D+ V+MTG + G Sbjct: 233 TGRSVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSG 267 >gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 274 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 141/283 (49%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I LS FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + V DD+ Sbjct: 121 PIWEPSQVPFTANKFEK------------NYILRTELQTVLCGVVSMGNPHCVLQV-DDV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+S +V + + LR +ERG G T ACGS AC +V Sbjct: 168 KTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L+IEW H ++MTG+A ++G Sbjct: 228 GIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDG 270 >gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2] gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2] Length = 276 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 149/284 (52%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFD--QIMLIHDFQDASVDAF 63 ++F KM G+GN +V H + SDA + HF L++ D Sbjct: 1 MEFTKMNGLGNDFIVWY---GHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKADFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116 +RIIN DGSE + CGN +RC +++ R + R+ T ET+ G+ L + + Sbjct: 58 MRIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ IP + + G F VSMGNPH + +VED Sbjct: 118 KVDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRFT----AVSMGNPHCVIYVED-AP 172 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 173 SFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVAS 232 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG++ Sbjct: 233 VLNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276 >gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810] Length = 274 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + + + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V +LGG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9] gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9] Length = 278 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 146/280 (52%), Gaps = 12/280 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G+GN V+D +T + I L FDQ++L+ QDA D RI Sbjct: 5 FTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 NCDG EV+ CGNG RC RF+ R+ ET RG++V + DG ++VDMG P Sbjct: 65 FNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDMGPPR 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP + D + + G + + VVSMGNPHA+ V DD+ + +FG Sbjct: 125 FRPADIPFVAAEDAVIHELEVAGQILGV-----TVVSMGNPHAVQVV-DDVDTAPVTAFG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242 L+ H F VN ++ S ++ LR +ERG G T ACG+ ACA+VVA L Sbjct: 179 PLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRGLLDA 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W + H V+MTG A +EG++ + Sbjct: 239 DTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278 >gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51] gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 287 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 144/284 (50%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++ KM G+GN + ID D + F D ++++ A D Sbjct: 5 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 A +RI+N DGSE + CGNG+RC R++ + + + ET+ GIL + + G Sbjct: 63 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVED Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVED-Y 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281 >gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313] Length = 280 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 154/288 (53%), Gaps = 27/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN + ++ C + + + HF D ++LI + A D Sbjct: 3 FTKMHGLGNDYIYVN---CFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV +++ R + ET+ GI L ++ + + Sbjct: 58 MRMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174 VDMGEPIL + IP+ D++ F PV F VSMGNPHA+ +V++ Sbjct: 118 VDMGEPILKPENIPV-----NSDKEIFRTEPVEIDGKEFKVT--CVSMGNPHAVSYVKN- 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + L G + HP+F + +N V +L +R WERG G T ACG+ ACA +V Sbjct: 170 VDIFPLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLV 229 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 AS + R +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+ Sbjct: 230 ASVLNGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277 >gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] Length = 286 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 19/279 (6%) Query: 6 VDFAKMEGIGNKILVIDM--RGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + ID+ + + D AI D ++LIH DA D Sbjct: 3 IPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA--DV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 +RI N DGSE +SCGNG+RC ++ + K F +T I+ A+ N+ + Sbjct: 61 GMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVNQV 120 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMGEPIL IP+ + D K+ + F + VSMGNPH +FFV DD+ Sbjct: 121 TIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGETQYIT----AVSMGNPHGVFFV-DDI 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G + K F E +N+ V S L+ R WERG G+T ACG+ ACA+VVA Sbjct: 176 EKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVA 235 Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + K ++ + V + GG L IEW ++NHV+MTG A+ Sbjct: 236 ATLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAE 274 >gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] Length = 281 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 139/267 (52%), Gaps = 16/267 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D R +IT ++ FDQ+ +I DA Sbjct: 10 TRLPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R L + T RG+L+A++ +G SV+MG+ Sbjct: 67 HLTFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQ 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ IPLA D ++ P+ P MGNPH FFV + LA Sbjct: 127 PQLDWQDIPLAEDVDTLEL------PIEGA----PTATGMGNPHCTFFVGNAEV-IPLAE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269 R V + + GG L I+W ++ V+MTG Sbjct: 236 GRKVQIDLDGGTLWIDWREDG-VWMTG 261 >gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] Length = 274 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIQRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G ++ D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GTVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDG 270 >gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846] Length = 274 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G+LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] Length = 282 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 148/293 (50%), Gaps = 32/293 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH------------ 53 +DF KM G+GN + C D A N + D + Q L H Sbjct: 1 MDFIKMHGLGNDFV------CLDRFLDPAENNPAETDYSELAQ-RLCHRQLGIGGDGLLL 53 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LV 107 DA +RI N DGSE + CGNG+RC R++ + +++ T ET+ GI L Sbjct: 54 ILPSEKADARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQ 113 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPH 166 K+ R ++VDMG+P L K IP+ D++ R + G + VS+GNPH Sbjct: 114 MKDGRVYGVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGIT-----AVSVGNPH 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + F+ DD D+ + G L KHP F N+ RV S E + ++ WERGVG T ACG Sbjct: 169 CVLFL-DDFAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACG 227 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ACASVVA+ +T R ++V + GG L IE+ + + MTG A+ + G+L Sbjct: 228 TGACASVVAAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280 >gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] Length = 269 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/282 (36%), Positives = 141/282 (50%), Gaps = 27/282 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLI-----HDFQDA 58 VDF KM G+GN +V+D R S+A + D NT DQ++++ HDF+ Sbjct: 3 VDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDDHDFR-- 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DG EV++CGN R V + + T ET G + E G SV Sbjct: 61 -----MRIYNSDGGEVEACGNASRAV-----AMLHGSPATVETAGGA-IRLEPAQGGASV 109 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP +W IPLA + D + PV L V++GNPH IFFV+D Sbjct: 110 DMGEPRFEWDAIPLAYAMDTANM------PVGWGELEAGIAVNVGNPHVIFFVQD-ADAV 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLA G + +F E +N+++A S L LR WERG GLT ACG+ ACA+ VA+ Sbjct: 163 DLAELGPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAIS 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W + MTG A + + G + Sbjct: 223 RLHMKSPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264 >gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] Length = 277 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 156/295 (52%), Gaps = 41/295 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ C + + HF D ++LI Q D Sbjct: 3 FTKMQGLGNDYIYVN---CFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQ--MCDFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKS-FTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV +F+ M +KS ET+ GI + K+N+ + Sbjct: 58 MRMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPHA 167 VDMGEPIL+ IP+ + LF+ P V VSMGNPHA Sbjct: 118 VDMGEPILEPAKIPVDSN--------------KELFVSQPVVIDGREFKVTCVSMGNPHA 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + +V DD+ + L G + + ++ + +N +V ++L +R WERG G T ACG+ Sbjct: 164 VTYV-DDVEKFPLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGT 222 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ACA +V+S +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+ Sbjct: 223 GACAVLVSSVLNDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277 >gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KMEGIGN + ID ++ + I LS D N +I S + + Sbjct: 9 INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLS-DRNFGIGGDGVIFIRNSNSGEFQMD 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA--KENRDGSI---SV 118 + N DGS + CGNG+RCV +F+ K + T ET +G+L K +G + +V Sbjct: 68 MYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVTV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEPIL L+P+ D+ ++ + + F VSMGNPH + +V DD Sbjct: 128 DMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DDADD 182 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA VAS Sbjct: 183 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 242 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 243 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286 >gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185] gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195] gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223] gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185] gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195] gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223] gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678] Length = 275 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PIL+ IP K ++ P+ SMGNPH + VED + Sbjct: 119 MGVPILEPSQIPFKAK--KPEKTYLLQTPMQTFLCG---AASMGNPHCVLDVED-VASAS 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G +L KH F GVN+ +V + LR +ERG T ACG+ ACA+VV Sbjct: 173 VAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K + V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 233 GKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20] gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate Epimerase At 1.7a gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Ll-Azidap gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Dl-Azidap gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20] gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21] gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866] gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] Length = 274 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] Length = 283 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 143/284 (50%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++ KM G+GN + ID D + F D ++++ D Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMV--LPSDKAD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 A +RI+N DGSE + CGNG+RC R++ + + + ET+ GIL + + G Sbjct: 59 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVED Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVED-Y 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277 >gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] Length = 267 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/274 (35%), Positives = 146/274 (53%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R ++NI AI T DQI++I + A D F Sbjct: 1 MIDFIKMHGTLNDFVIIDCRSKFYNNIDYKAIANRKT--GIGCDQIIVITKSEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ ++ + T E IL + ++ V+MG Sbjct: 57 MHIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP+++ D + H+ P+ L +P +++GNPHAIFFV + + L Sbjct: 117 KFHWTDIPISQECDTL-----HL-PITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + LR WERG G TA+CGS ACA++VA+ T+ Sbjct: 170 GPKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTD 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ + GG LLI + ++N + M G + G Sbjct: 230 TTATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263 >gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 280 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KMEGIGN + ID ++ + I LS D N +I S + + Sbjct: 3 INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLS-DRNFGIGGDGVIFIRNSNSGEFQMD 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA--KENRDGSI---SV 118 + N DGS + CGNG+RCV +F+ K + T ET +G+L K +G + +V Sbjct: 62 MYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEPIL L+P+ D+ ++ + + F VSMGNPH + +V DD Sbjct: 122 DMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DDADD 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA VAS Sbjct: 177 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 237 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280 >gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] Length = 274 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] Length = 267 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R + NI AI T DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIANRKT--GIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + H+ P+ L +P +++GNPHAIFFV D + L Sbjct: 117 KFHWTDIPTSQECDTL-----HL-PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V + GG LLI + +N + M G + G Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNG 263 >gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] Length = 274 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] Length = 308 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 149/286 (52%), Gaps = 12/286 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 Q ++ F KM G+GN +V+D + D I L+ + FDQ++++ V Sbjct: 8 QGPVLRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDV 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + ++ +T +G++ K RDG ++V Sbjct: 68 DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P L+ IP A K D + + VN + +SMGNPH + V D++ Sbjct: 128 NMGVPELNPPAIPFAADQRK---DVYTVD-VNGQTVEL-SAISMGNPHGVLVV-DNVDTA 181 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + S G L KHP F N+ +V LR +ERG G T ACGS ACA+VVA GC Sbjct: 182 PVESLGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVA-GC 240 Query: 239 LHK-TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 L + V V++ GG L+IEW ++ V M G A +EG+L + Sbjct: 241 LRGLLDSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286 >gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] Length = 283 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 143/277 (51%), Gaps = 7/277 (2%) Query: 8 FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V++ G D +T+ FDQ++L+ +VD RI Sbjct: 6 FTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++V+MG+P Sbjct: 66 FNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNMGKPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP D+ D H+ V L V+MGNPHA+ VED + +A +G Sbjct: 126 FTSSEIPFVPVPDEADDALTHMVMVG-LETVQVSCVNMGNPHAVIVVED-VQTAPVAHWG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VV+ L Sbjct: 184 EAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGVRLGLLAE 243 Query: 245 AVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V VK + GG L I W V MTG + +EG+L Sbjct: 244 GVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280 >gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] Length = 266 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/271 (34%), Positives = 138/271 (50%), Gaps = 16/271 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +V+D R +T ++ FDQ+ ++ + DA + N Sbjct: 2 KMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFYN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R L + T RG L A++ +G SV+MG P LDW+ Sbjct: 59 ADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDWQ 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA D ++ P+ P MGNPH FFVED L FG Sbjct: 119 DIPLAEEADTLEL------PIEG----GPTATGMGNPHCTFFVEDAEV-IPLEEFGQRYE 167 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ + N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T R V + Sbjct: 168 HHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQI 227 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + GG L I+W ++ V+MTG ++G L Sbjct: 228 DLDGGTLWIDWAEDG-VWMTGPTMHVFDGTL 257 >gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] Length = 286 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 150/288 (52%), Gaps = 29/288 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56 ++F K +G+GN +++D R +AI LS+ + + HF D ++ Sbjct: 1 MEFTKYQGLGNDFILVDNR-------HNAIPLLSSKEAIKLCDRHFGIGADGVIFALP-G 52 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENR 112 D + D +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ + Sbjct: 53 DENTDYTMRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEE 112 Query: 113 DGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 DG + VDMG P L K IP L + +K+ +G + VSMGNPH I F Sbjct: 113 DGQVKVDMGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQSWSVT----CVSMGNPHCITF 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D++ L + G + H +F E N V + L +R WERG G+T ACG+ AC Sbjct: 169 V-DNVATIPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ASVVA +R +V++ GG L IEW + +N ++MTG A+ + G Sbjct: 228 ASVVAGVLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTG 275 >gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330] Length = 282 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 144/280 (51%), Gaps = 9/280 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID ++ I + FDQ++++ Q VD RI Sbjct: 6 FSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG RC V+F+T + + ET RGI+ + N DG ++V+MG+P Sbjct: 66 FNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQPR 125 Query: 125 LDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +P RS +K D F + VN + +VSMGNPHA+ V D+ + ++ Sbjct: 126 FAPDDVPFVLRSGEKADDKTFIV--VNGIDSAEMSLVSMGNPHAVMLV-GDVATAPVENW 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG--CLHK 241 GN L H F VN+ ++ + + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 183 GNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSLLT 242 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V + GG L I W D V MTG A + G++ + Sbjct: 243 AGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282 >gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] Length = 283 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 7/277 (2%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V++ + D +T+ FDQ++L+ +VD RI Sbjct: 6 FTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++V+MG+P Sbjct: 66 FNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNMGKPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP D+++ H+ V L V+MGNPHA+ VED + +A +G Sbjct: 126 FTSSEIPFVPVPDEVEDALTHMVMVG-LETVQVSCVNMGNPHAVIVVED-VQTAPVAHWG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 184 EAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGVRLGLLAE 243 Query: 245 AVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V VK + GG L I W V MTG + +EG+L Sbjct: 244 GVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280 >gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] Length = 276 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F+KM G+GN +VID +T + I L+ + HF DQ++L+ + +VD Sbjct: 3 IRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLA---DRHFGVGCDQVLLVEIPEQPNVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDGSEV++CGNG RC F+ R ++ ET GI+ + D +SVD Sbjct: 60 FRYRIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L + IP + G V + VSMGNPHA+ V DD+ Sbjct: 120 MGVPRLLPEKIPFVADQQAVTYPLDVAGQVCSIS-----AVSMGNPHAVMLV-DDVKSAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ HP F VN +V S + ++LR +ERG G T ACG+ ACA+VV Sbjct: 174 VGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLR 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L I W H V MTG A + G++ + Sbjct: 234 GLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276 >gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] Length = 278 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 22/286 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61 M+ F KM G+GN +VI + + L+ + F I L++ D Sbjct: 1 MMKFTKMHGLGNDFIVI----AGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVAD 56 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSIS 117 +RIIN DGSE + CGN +RC +++ ++ T ET+ V E DG + Sbjct: 57 FRMRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQ 116 Query: 118 ---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVED 173 VDMG PIL+ +P +D DR P+ F VSMGNPH + +V D Sbjct: 117 QVRVDMGAPILNGLQVPTT-----VDEDRVIEHPIEVDGREFRFTAVSMGNPHCVIYV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D ++DLA++G L HPMF +N+ V S E ++R WERG G T ACG+ ACA+V Sbjct: 171 DAANFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATV 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 V+S T+R V + GG L IEW++ +NHV+MTG A + + G+ Sbjct: 231 VSSVLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGE 276 >gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021] Length = 274 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 274 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN ++ID + ++TS+ I LS FDQ++++ D ++D RI Sbjct: 3 FTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHCRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+EV CGNGMRCV +F L +++ T ++ D +SV+MG PI Sbjct: 63 YNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGAPI 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D KLIP S + + P + VVSMGNPH I VE + + + S G Sbjct: 123 FDPKLIPFYIS--QYQKTYILFLPTQIILCG---VVSMGNPHCIILVEK-IENIQVTSLG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHK 241 + L H F E VN+S ++ + ++ LR +ERGVG T ACG+AACA+V + G L++ Sbjct: 177 SALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLLYE 236 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V+V + GG + + W +N ++MTG ++G +++ Sbjct: 237 S---VNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274 >gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] Length = 274 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 140/277 (50%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G +V D ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD++ ++A Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------GAVSMGNPHCVVQV-DDIHTANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + + LR ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG LLIEW H ++MTG A ++G Sbjct: 234 LDNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDG 270 >gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193] gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193] Length = 292 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 133/273 (48%), Gaps = 16/273 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R IT ++ FDQ+ LI + DA + Sbjct: 27 FMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALI---EQGKGDAHLTF 83 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RC+ R L + T RG L A + +G SV+MG P LD Sbjct: 84 FNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQLD 143 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPL D ++ P+ P MGNPH FFVED L FG Sbjct: 144 WRDIPLREETDTLEL------PIE----GGPTATGMGNPHCTFFVEDAGL-IPLTDFGPR 192 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ T R V Sbjct: 193 YEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRRV 252 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + GG L I+W D+ V+MTG + G Sbjct: 253 QIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTF 284 >gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] Length = 277 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 143/281 (50%), Gaps = 24/281 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 S + F KM G+GN +V+D R +T AL+ N H FDQ+ LI + + Sbjct: 7 SGLPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALA---NRHTGVGFDQLALITNTKTGV 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 AF N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+ Sbjct: 64 HLAFF---NADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178 MG P LDW +PLAR D ++ L ++ P MGNPH FFV DD Sbjct: 121 MGAPQLDWAEVPLAREMDTLE-----------LPMKGAPTATGMGNPHCTFFV-DDAMQI 168 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+A G H +F + N+ A +T + + +R WERGVG+T A GS++CA VA+ Sbjct: 169 DVAKLGAEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAAR 228 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V + + GG L I+W D+ V+MTG + + G L Sbjct: 229 RGLTGRKVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTL 268 >gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 276 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 151/280 (53%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ + FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL ++ + + +G + LF+ SMGNPH + V DD+ ++A Sbjct: 123 PEFEPANIPL-KANKQENTYILRVGE-STLFIG---AASMGNPHCVMEV-DDVDTANVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ KH FSEGVN+ ++ + + LR +ERG G T ACGS ACA+V K Sbjct: 177 IGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] Length = 274 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 141/283 (49%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120 Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 P+ + IP +A F+K + LR VSMGNPH + VED + Sbjct: 121 PVWEPNKIPFIANKFEK------------NYILRTTVQTVLCGAVSMGNPHCVVQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ G LL H F E VN +V + + + LR +ERG G T ACGS ACA+V Sbjct: 168 QTANVEQLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG A ++G Sbjct: 228 GIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270 >gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] Length = 274 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VS+GNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSIGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893] gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893] Length = 327 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 20/299 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 Q M++F KM G+GN +V+D + + I L+ + FDQ++++ V Sbjct: 14 QGPMLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDV 73 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + +K +T +G++ + R G ++V Sbjct: 74 DFRYRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P L+ IP A K D + + G L VSMGNPH + V DD+ Sbjct: 134 DMGVPELNPPAIPFAADRRK---DVYTVELGGDTVELS-----AVSMGNPHGVLLV-DDV 184 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G L HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 185 DTAPVGEYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVA 244 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 GCL NR V V++ GG L+IEW + V M G +EG+L + + ++ + Sbjct: 245 -GCLRGLLDNR-VDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPADQPPRRRK 301 >gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] Length = 290 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 15/282 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +++F K +G+GN +++D R + S +A+ D ++ D S D Sbjct: 12 IMEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDDQS-DY 70 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ + +G + V Sbjct: 71 TMRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKV 130 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P L K IP L + +K+ +G + + VSMGNPH I FVE+ + Sbjct: 131 DMGNPFLLAKEIPTTLTKGEEKVINQFLEVGGQSW----SVTCVSMGNPHCITFVEN-VA 185 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G + H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 186 TIPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAG 245 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 +R +V++ GG L IEW + +N ++MTG A+ + G Sbjct: 246 VLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTG 287 >gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] Length = 269 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 133/263 (50%), Gaps = 16/263 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R IT ++ FDQ+ +I + DA + Sbjct: 3 FMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVI---EPGKGDAHLVF 59 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RC+ R L + T RG L A++ DG SV+MG P L Sbjct: 60 YNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQLL 119 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA D ++ P+ P MGNPH FFV D LA FG Sbjct: 120 WHEIPLAEEMDTLEL------PIE----GGPTATGMGNPHCTFFVAD-AEAIPLAEFGAR 168 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 HP++ + NL +A++T + + +R WERGVG+T A GS++CA+ VA+ T R V Sbjct: 169 YEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGRKV 228 Query: 247 SVKMLGGGLLIEWHDNNHVFMTG 269 + + GG + I+W ++ V+MTG Sbjct: 229 QIDLDGGTIWIDWREDG-VWMTG 250 >gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126] Length = 276 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ + FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL ++ + + +G + LF+ + SMGNPH + V DD+ ++A Sbjct: 123 PEFEPANIPL-KANKQENTYILRVGE-STLFIGS---ASMGNPHCVMEV-DDVDTANVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ KH F EGVN+ ++ + + LR +ERG G T ACGS ACA+V K Sbjct: 177 IGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 + V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 237 GKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] Length = 280 Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 22/288 (7%) Query: 8 FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDD-NTHF----DQIMLIHDFQDASVD 61 F K G+GN +++D C + + + L+ + HF D ++L+ S D Sbjct: 3 FTKAHGLGNDFILVD---CFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLL--LPSPSAD 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115 +RI N DGSE + CGN +RCV ++L R +K ET+ G+++ + E R Sbjct: 58 VSMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRL 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEP L+ IP+ ++ + G + VSMGNPH + FV+D L Sbjct: 118 VRVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRIT----AVSMGNPHCVIFVQD-L 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L+ HP F N+ +V + E + +R WERG G T ACG+ ACA+VVA Sbjct: 173 DAVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T R V+V + G L IEW + HV+M+G A++ + G+ +T Sbjct: 233 GVLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280 >gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] Length = 278 Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 146/279 (52%), Gaps = 16/279 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + + + D + FDQ+ I D + A Sbjct: 6 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 64 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 123 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ M+ D P+ P V MGNPH +FFVED + DL Sbjct: 124 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-VEAVDL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 173 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V ++M GG L ++W D V+++G + +EG L Sbjct: 233 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 270 >gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] Length = 277 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 154/284 (54%), Gaps = 19/284 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K+ G+GN +V++ + + +D + +F D ++L+H DA+ D Sbjct: 3 FVKVHGLGNDFVVVN--AMTETLPADLPELARRVCHRYFGIGADGLVLLHK-SDAA-DLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 ++IIN DGSE + CGN +RCV ++ + +K+ ET+ GI L+ + I Sbjct: 59 MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP+ S ++ + ++G N F VSMGNPH + FV D+ Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVG--NETF--KVTAVSMGNPHCLIFV-DEAVS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + ++ G + H +F N+ V + + ++ WERG G T ACG+ ACA+VVA+ Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V+V + GG LLIEW DNNHV+MTG A++ + G + Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277 >gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191] gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191] Length = 274 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 151/282 (53%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62 ++F K +G+GN ++ID I D +NAL D + LI F AS D Sbjct: 1 MEFVKYQGLGNDFILIDCV----KIKIDGLNALGKKLCDRHFGIGADGLIAVFPSASADY 56 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121 IRIIN DG+E + CGNG+RC +RF+ +K ++ TFET+ G + + + + VDMG Sbjct: 57 KIRIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMG 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV----VSMGNPHAIFFVEDDLY 176 P L IPL S D D + PV L + VSMGNPH + FVED + Sbjct: 117 APKLTAAQIPLNIS----DSDGRAVDIPVK---LEGGKIKGTGVSMGNPHFVIFVED-IK 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+A G + + F + N+ +V + L ++ WERGVG+T ACG+ ACAS+VA Sbjct: 169 KTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277 +KT R V++ GG L +EW D+ VFMTG A + + G Sbjct: 229 VLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270 >gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 274 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 139/277 (50%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K+ T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + VED + ++ Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------SAVSMGNPHCVVQVED-IQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG A ++G Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270 >gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] Length = 277 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 22/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM+ +GN +VID ++SD I LS DQ++L Q D R+ Sbjct: 6 FTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDIRYRV 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG+RC+ RFL + +++ ET G+ + DG+I+V+MG P+ Sbjct: 66 FNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNMGPPV 125 Query: 125 LDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 L+ + IP + ++ R IG VSMGNPHA+ V DD+ Sbjct: 126 LEPERIPFRPTKQASEYALALEDKRIMIG-----------AVSMGNPHAVLQV-DDIDSA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +FG L+ +H F + VN+ +V S + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 174 PIDTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L+I W + V+MTG A +EG++ + Sbjct: 234 RGLLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277 >gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] Length = 283 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 148/286 (51%), Gaps = 25/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D I A A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +K ET +GI+ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 IP D+ D + I PV+ V++GNPHA+ V DD+ Sbjct: 125 KFMPSEIPFVPVSDEGDDACIYGVHLESGIQPVS--------CVNIGNPHAVIVV-DDVE 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 176 CAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAG 235 Query: 237 ---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 236 IRLGLLDE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] Length = 277 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 25/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V+D + + + + D HF D I+++ DA Sbjct: 3 FVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCD--RHFGIGADGIIIV--LPSDIADAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SIS 117 +RI+N DGSE + CGNG+RC +++ + +K++ + ET+ GI+ + +G + Sbjct: 59 MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDD 174 VDMG+P + IP ++ + P+ + SMG PH + FV DD Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVD-------SQPYAITSMSMGVPHTVIFV-DD 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+ G + KHP+F + N++ V + + +RTWERG G T ACG+ +CAS V Sbjct: 171 VDEVDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAV 230 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ +T RAV+V ++ G L I W +++ VFMTG A K ++G ++ Sbjct: 231 AAAITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276 >gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae Length = 274 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G +V I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] Length = 290 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 139/277 (50%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG+GN +V+D G N D + H+ DQI+L+ D Sbjct: 15 FTKMEGLGNDFVVLD--GVRRNFLLDP-ETCQRIAHRHYGIGCDQILLVEPASSPDCDFR 71 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC F+ ++S ET G L + + DG+++VDMG Sbjct: 72 YRIFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMG 131 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P LD IP R+ + R +G +H+ L V MGNPHA+ VED + +A Sbjct: 132 VPRLDPADIPF-RAPAAANNYRLDLG-QDHIEL---AAVGMGNPHALLRVED-VRGAPVA 185 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL HP F E N+ + S +L LRTWERG G T ACGS ACA+VVA Sbjct: 186 EIGPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGA 245 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V++ GG L I W H+ MTG A+ ++G Sbjct: 246 LRERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDG 282 >gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031] gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031] Length = 274 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC +F+T + +K + +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] Length = 310 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 18/283 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T + + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEVQ CGNG RC RF+ +R ++ ET GI+ + G + VDMG Sbjct: 62 YRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +P + IP ++ + + PV +V +MGNPHA+ V DD+ Sbjct: 122 KPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL------YVANMGNPHAVIKV-DDVLT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 ++ G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V V Sbjct: 175 AEVEKLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G L + + ++ GG L I W + V+MTG A +EG Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEG 276 >gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] Length = 277 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 147/287 (51%), Gaps = 22/287 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ + + I L+ FDQ++++ +D +D Sbjct: 2 LLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC RF L R+ ++ ET G L DG +SVDMG Sbjct: 62 YRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDMG 121 Query: 122 EPILDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +P + +P D+ +D + IG V S+GNPHA+ V DD+ Sbjct: 122 KPRFAPQDLPFEADGDRPLHDLEVDGQQISIG-----------VASLGNPHAVLRV-DDV 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A+ G + HP F VN +V S + LR +ERGVG T ACG+ ACA+V Sbjct: 170 TTAPVATLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVAC 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I+W D ++ MTG A++ +EG++ I Sbjct: 230 GIRQGLLESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276 >gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999] Length = 276 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 143/279 (51%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F KM G+GN +V+D + + + I L+ + FDQ++L+ D D Sbjct: 2 LVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + + + T G ++ +DG ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +P+ + + + I + F VS+GNPH + V DD+ YD+ Sbjct: 122 RPRFAPDDVPMKA---QKQENTYIIREADQTFFCG--AVSLGNPHCVMVV-DDIDTYDVL 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + VN+ ++ ++ LR +ERGVG T ACGS ACA+V K Sbjct: 176 GVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQGK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKL 279 V+V + GG L I W ++H MTG A+ ++GK+ Sbjct: 236 LGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274 >gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 274 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 138/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + VED + ++ Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------SAVSMGNPHCVVQVED-IQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG A ++G Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270 >gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT] gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT] Length = 274 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 142/276 (51%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G ++ + D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ + L VVSMGNPH + VED + H ++ Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVED-IQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L+IEW H ++MTGEA ++G Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDG 270 >gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 281 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 22/290 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + + F KMEGIGN + ID + +T + I +S N +F D ++ I + + Sbjct: 2 AALKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKIS---NRNFGIGSDGVIFIRNSKQG- 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENR 112 D + + N DGS + CGNG+RCV +++ K+ ET G+L + N+ Sbjct: 58 -DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNK 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +SV+MG+PIL IP+ ++ D+ F I N F VSMGNPH + FV Sbjct: 117 VDFVSVNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNLKFT----AVSMGNPHCVIFV 172 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD + + G L+ +HP+F + +N+ V + RTWERG G T ACG+ ACA Sbjct: 173 -DDCDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACA 231 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA K+ + V + + GG L I+W ++ +V MTG AK+ + G++++ Sbjct: 232 VTVAGNLTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281 >gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 280 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 155/289 (53%), Gaps = 24/289 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M++ KM G+GN +V+ SD L N HF D ++ I ++A Sbjct: 1 MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLC---NRHFGIGADGLVYILPSKEA-- 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETI-----RGILVAKEN 111 D +RIIN DGSE + CGN +RCV +++ + T +TI R + K+ Sbjct: 56 DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDG 115 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + ++ VDMGEPIL+ IP + + + + + F VSMGNPH + +V Sbjct: 116 KVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVSMGNPHCVIYV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD +L +G LL HP+F + +N+ A V S + + + WERG G T ACG+ ACA Sbjct: 172 -DDAVTMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACA 230 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ++VAS + T+R ++ + GG L IEW++ +NHV+MTG A + ++G+L Sbjct: 231 TLVASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 279 >gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV GNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] Length = 280 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 144/285 (50%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + FAK G+GN +++D R G A+ + D ++ S D Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDS-DYV 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC+ +FL+ + + T G++V G ++VDMG Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121 Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLY 176 L IP L + D++ +G P+ VSMGNPH I FVED + Sbjct: 122 PAYLKPVEIPTTLTGTGDRVVEADLEVG-------DRPWKVTTVSMGNPHCITFVED-VA 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 LA G L HP+F + N V + L +R WERG G T ACG+ ACA++VA+ Sbjct: 174 AVPLAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +++R +V++ GG L IEW ++ H+FMTG A K + G +++ Sbjct: 234 VLTGRSDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMEL 278 >gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] Length = 279 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 145/279 (51%), Gaps = 16/279 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + + + D + FDQ+ I D + A Sbjct: 7 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 65 DCALDFWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ M+ D P+ P V MGNPH +FFVED DL Sbjct: 125 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-AEAVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V ++M GG L ++W D V+++G + +EG L Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 271 >gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131] gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131] Length = 279 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 145/279 (51%), Gaps = 16/279 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + + + D + FDQ+ I D + A Sbjct: 7 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 65 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ M+ D P+ P V MGNPH +FFVED DL Sbjct: 125 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-AEAVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 AGRGASVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V ++M GG L ++W D V+++G + +EG L Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 271 >gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] Length = 282 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 158/289 (54%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + AL+ D N D ++L+ A V Sbjct: 3 FTKMHGLGNSYIYVDL--FKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPVK- 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116 +R+ N DGSE ++CGNG+RCV +F +K ++F ET+ G++ A + +G ++ Sbjct: 60 -MRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118 Query: 117 SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V+MG+P L + +P L S +K+ + F + VSMGNPH +FFVED + Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELT----AVSMGNPHGVFFVED-I 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ K F E +N+ V S L R WERG G+T ACG+ ACA+VVA Sbjct: 174 NQAPVDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVA 233 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 S +N+ +V+V +LGG L IEW ++ V MTG A+ EG + K Sbjct: 234 SILNGHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFERK 282 >gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str. 301020] Length = 276 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DPHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 291 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 141/276 (51%), Gaps = 12/276 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ +GN ++I+ + A+ A D ++++ Q A D +R Sbjct: 1 MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI---LVAKENRDGSISVDM 120 I N DGSE ++CGNG+RC+V+++ ++ T ET G+ ++ D I M Sbjct: 59 IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118 Query: 121 GEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 GEPIL+ IP+ + + + VN F VSMGNPHAI F+E DL Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTLAF-VSMGNPHAIEFIESDLE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + L G + KH MF N IARV +++R WERGVG T ACGS ACA VVAS Sbjct: 178 AFPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVVVAS 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + T V +K+ GG L EW + V++TG A+ Sbjct: 238 WIMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQ 273 >gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] Length = 274 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T ACGS A A+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15] Length = 304 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 18/289 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 Q M+ F KM G+GN +V+D + + I L+ + FDQ++++ V Sbjct: 8 QGPMLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDV 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + +K +T +G++ + R+G + V Sbjct: 68 DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +MG P + IP A K D + + G L +SMGNPH + VED + Sbjct: 128 NMGVPEFNPPAIPFAADRRK---DVYTVDVDGQTVELS-----ALSMGNPHGVLLVED-V 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L +HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 179 DQAPVETLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVA 238 Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 GCL A V V++ GG L+IEW + V M G A +EG+L + Sbjct: 239 -GCLRGLLDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286 >gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304] gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579] gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149] gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33] Length = 283 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13] Length = 284 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 151/278 (54%), Gaps = 19/278 (6%) Query: 7 DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++M + + +++ A+ + D ++LI + A V Sbjct: 5 QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEVAPVK-- 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ ++RK+F ET+ G++ A+ + S++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAGKVTSVT 122 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L K IP L + + + F + + VSMGNPH IF++ DD+ Sbjct: 123 VDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEIT----TVSMGNPHVIFYL-DDIK 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K P F EGVN+ V + + L R WERG G+T ACG+ ACA+VVAS Sbjct: 178 DAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGACAAVVAS 237 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 +KT N+ V + GG L I W + V M G A+ Sbjct: 238 VLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAE 275 >gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis alpha710] gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190] gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902] Length = 283 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 RFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345] gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345] Length = 278 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 148/283 (52%), Gaps = 14/283 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 S ++ F KM G+GN +V+D G N+ + D I L+ + FDQ++L+ D Sbjct: 2 SILIQFTKMHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPD 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++ Sbjct: 60 LDFHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L+ IP + K+++ + VSMGNPH + VED + Sbjct: 120 VNMGIPALEPGKIPF--TAKKVEKTYLLMASSGTYLCG---AVSMGNPHCVIEVED-VAA 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 174 TDVDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K +R V V + GG L+I W + ++MTG A+ ++G++ Sbjct: 234 LQGKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276 >gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] Length = 276 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC RF+ RMK + + T G L +DG ++V+ Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IPL S ++ + I H VSMGNPH + V DD+ Sbjct: 120 MGHPNFEPSKIPLKASKRELT---YIIRAEEHTVFSG--AVSMGNPHCVIEV-DDITTAQ 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V Sbjct: 174 VDVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + AV V + GG L I W H V MTG A+ ++G++ + Sbjct: 234 SKLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] Length = 276 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 145/284 (51%), Gaps = 16/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + I D I L+ + FDQ++++ D +D Sbjct: 2 LVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC RF+ RMK R T G + +DG +SV+ Sbjct: 62 YRIFNSDGTEVEQCGNGARCFARFV--RMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P L+ IP F R+ +I +H VSMGNPH + V DD+ Sbjct: 120 MGQPKLEPHTIP----FKAAKRENTYIFRAQDHTVFCG--AVSMGNPHCVVEV-DDITTA 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL H F + N+ ++ S E + LR WERG G T ACG+ ACA+VV Sbjct: 173 PVNVLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGIL 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K V V + GG L + W H V MTG A+ ++G++ + Sbjct: 233 QKKLAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276 >gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945] gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136] Length = 283 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] Length = 283 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 145/280 (51%), Gaps = 13/280 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN +VID N T + + D FDQ++++ + VD Sbjct: 6 FTKMHGLGNDFMVID--AVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEGVDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + +K ET +G++ K + +G ++V+MG+ Sbjct: 64 RIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGK 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 124 PKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITV-DDVECAPVRE 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 182 TGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLL 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 242 DE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] Length = 277 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 143/277 (51%), Gaps = 13/277 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D ++T + I LS F+Q++++ D S+D RI Sbjct: 3 FSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHCRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV CGNG+RCV RF+ + +++ T G + D ISV+MGEPI Sbjct: 63 YNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGEPI 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP F + ++ P + VVS+GNPH I VE + L G Sbjct: 123 FEPDKIPFI--FPQYQKNYILFLPTQTILCG---VVSIGNPHCIVLVE-TIESVSLNILG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHK 241 L H F + N+S R+ E+++LR +ERGVG T ACGSAACA+V + G L + Sbjct: 177 PALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLLIR 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 R V V +LGG L + W + ++M G ++G Sbjct: 237 EERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDG 273 >gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] Length = 278 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 147/288 (51%), Gaps = 24/288 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDAF 63 + F+KM G+GN +VID +++ D + L+ DQ++L+ D A+ D Sbjct: 3 IQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC F+ R + ET GI+ + DG ++VDMG Sbjct: 63 YRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMG 122 Query: 122 EPILDWKLIPLA-----RSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 P L IP S+ +++ + + IG VSMGNPHA+ V D++ Sbjct: 123 PPRLKPWQIPFEAESAMTSYPLEVEGETYEIG-----------AVSMGNPHAVLRV-DNV 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A G L+ HP F VN+ +V S + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 171 QTAPVARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVS 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L+I W + V MTG A + + G +DI Sbjct: 231 GRIQGLLDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278 >gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] Length = 278 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 64 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP D + +P F ++ +I H L VVSMGNPH + V DD+ ++ Sbjct: 124 EPNFDPQSVP----FRATKAEKTYIFRAAEHTVLCG--VVSMGNPHCVLQV-DDVSVANV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G +L H F E N+ +V S E++ LR +ERG G T ACGS ACA+V Sbjct: 177 ALLGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQE 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V+V++ GG LLI W H ++MTG A ++G Sbjct: 237 LLDEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDG 274 >gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336] gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336] Length = 274 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 96/276 (34%), Positives = 140/276 (50%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ + L VVSMGNPH + VED + H ++ Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVED-IQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L+IEW H ++MTGEA ++G Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDG 270 >gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] Length = 276 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 144/279 (51%), Gaps = 16/279 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + + + D + FDQ+ I D + A Sbjct: 4 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T RG L A+ DG ++V+M Sbjct: 62 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ M+ D P+ P V MGNPH I+FVED DL Sbjct: 122 GAPQLLWSEIPLARA---METDSL---PLEG----TPSAVGMGNPHCIYFVED-AEAVDL 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 171 AGRGAAVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V ++M GG L ++W D V+++G + +EG L Sbjct: 231 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 268 >gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] Length = 279 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 145/283 (51%), Gaps = 18/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K +G GN ++++ G + + D + H+ D ++L+ Q A D Sbjct: 5 FTKWQGCGNDFVLVN--GFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 +RI N DG+E + CGNG+RC + + FT ET GILV + GS + Sbjct: 61 MRIFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVR 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ + IP+ F I F VSMGNPH + FVED Sbjct: 121 VDMGEPILEGERIPVL-GFGASRVIEQPIEAEGETFSMT--CVSMGNPHCVIFVED-AQD 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + FG LL +H F + N+ A + + +R WERG +T ACG+ +CA++VA+ Sbjct: 177 VPMEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAA 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +T R V++ GG L IEW +N+HV+MTG A+K + G+ + Sbjct: 237 LTGRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279 >gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] Length = 287 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 137/288 (47%), Gaps = 15/288 (5%) Query: 4 SMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN VID + D + FDQ++L+ D Sbjct: 2 AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++VDM Sbjct: 62 RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121 Query: 121 GEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 G+P L IP + D + D G + L V+MGNPHA+ V DD Sbjct: 122 GKPRLRPSEIPFLPAEGAAEDALRHDIAANGAAVSVGL-----VNMGNPHAVLTV-DDTD 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV-- 234 +A+ G L HP F E N+ +V + LR +ERGVG T ACG+ ACA+VV Sbjct: 176 AAPVATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHG 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L V V + GG L I W + V MTG A+ ++G + + Sbjct: 236 VRLGLLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVISYQ 283 >gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] Length = 274 Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 145/281 (51%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + D I L+ + FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF L +K T +G +V N D ++ V+MGE Sbjct: 61 RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120 Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P +A F+K R I V VVSMGNPH + VED + ++ Sbjct: 121 PIWEPAKVPFIANKFEKNYILRTDIQTVLC------GVVSMGNPHCVLQVED-VKTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F N+ +V + + + LR +ERG G T ACG+ ACA+V Sbjct: 174 QLGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L+IEW + ++MTG+A ++G + + Sbjct: 234 LDNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274 >gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305] gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305] Length = 274 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 140/283 (49%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + IP A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQIPFTANKFEK------------NYILRTSLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 QTAPVNELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L+IEW H ++MTG+A ++G Sbjct: 228 GIMQGLLDSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDG 270 >gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568] gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399] Length = 283 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355] gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196] Length = 283 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] Length = 278 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 11/276 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA-SVDAFIRI 66 F K G+GN ++ID R I + D N +I D +RI Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE + CGNG+RC+ +F+ + + T GI+V + DG ++VDMG+P Sbjct: 65 FNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPR 124 Query: 125 LDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L IP LA + DK+ +G + VSMGNPH I FVED + DLA Sbjct: 125 LLASEIPTTLANADDKVVDQLLEVGGKSWFVT----CVSMGNPHCITFVED-VTAIDLAK 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +P+F E N +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 180 IGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNN 239 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 R V+V++ GG L IEW + ++MTG A+K + G Sbjct: 240 ERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTG 275 >gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] Length = 276 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC RF+ RMK + + T G L +DG ++V+ Sbjct: 62 YRIFNADGHEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IPL + ++ + I H VSMGNPH + V DD+ Sbjct: 120 MGHPNFEPSKIPLKATKRELT---YIIRAEEHTVFSG--AVSMGNPHCVMEV-DDIETAQ 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +++ G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V Sbjct: 174 VSTLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +K V V + GG L + W H V MTG A+ ++G++ + Sbjct: 234 NKLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis WUE 2594] Length = 283 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAQVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] Length = 287 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 9/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64 ++F K G+GN ++ID R + I + D + +I D + D + Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120 RI N DGSE + CGNG+RC+ +F+T + ++ T G++ + DG + VDM Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP S + + + + VSMGNPH I FV DD+ L Sbjct: 123 GLPRLLAAEIPTTLSENNLKVIDVPLEVAGQVLSVT--CVSMGNPHCITFV-DDVASVPL 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 180 TEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLTQ 239 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + +R V+V++ GG L IEW + ++MTG A+ ++G+L Sbjct: 240 RCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279 >gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] Length = 281 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 19/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN ++ID R D + S + D HF D ++ + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDR--HFGIGADGVIFVLP-GTPQTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ +F+ + K++ +T+ G++ + + ++ Sbjct: 60 YQMRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVT 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L IP L + +K+ +G + L VSMGNPH I FVE+ + Sbjct: 120 VDMGPPQLQAAQIPTTLVTATEKVINQPLSVGGKSWLVT----CVSMGNPHCITFVEN-V 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G H F + N V + L +R WERG G+T ACG+ ACA+VVA Sbjct: 175 DEIPLEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277 H+++R +V++ GG L I W + + HV+MTG AK+ + G Sbjct: 235 GLLTHRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277 >gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640] gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06] Length = 283 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 105/280 (37%), Positives = 145/280 (51%), Gaps = 13/280 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDD--NTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN +VID N T DA A D FDQ++++ + VD Sbjct: 6 FTKMHGLGNDFMVID--AVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K ET +G++ K + +G ++V+MG+ Sbjct: 64 RIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGK 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 124 PKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRE 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239 G L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 182 TGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLL 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 242 DE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] Length = 276 Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC RF+ RMK + + T G L +DG ++V+ Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IPL S ++ + I H VSMGNPH + V DD+ Sbjct: 120 MGHPNFEPSKIPLKASKRELT---YIIRTQEHTVFSG--AVSMGNPHCVLEV-DDVTTAQ 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V Sbjct: 174 VDILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +K + V V + GG L + W H V MTG A+ ++G++ + Sbjct: 234 NKLSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2] Length = 276 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + D I L+ + FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IPL + ++ +I VN LF VSMGNPH + VED + + Sbjct: 123 PEFEPAKIPLKAN----KQENTYILRVNDKTLFYG---AVSMGNPHCVMEVED-VDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ ++ F EGVN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 KEIGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K ++ V V + GG L I W ++V MTG A ++G +++ Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276 >gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] Length = 278 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 151/286 (52%), Gaps = 25/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61 F KMEG+GN + I+ C + + HF D ++LI D D ++D Sbjct: 3 FTKMEGLGNDYVYIN---CFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKADFTMD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 + N DGS + CGNG+RCV +++ + S + ET+ GI V K+ + Sbjct: 60 MY----NADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDM 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG PIL +P+ +++ ++ + V++ VSMGNPHA+ FV DD Sbjct: 116 VTVDMGAPILKADQVPVRSDKEQVIDEKITVAGVDYHMT----CVSMGNPHAVMFV-DDT 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H+ L G L H +F VN +V ++ +R WERG G T ACG+ ACA+ VA Sbjct: 171 EHFPLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVA 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 KT+ V+VK+LGG L+I + +NN V+MTG A+ ++G+ D Sbjct: 231 CVLNGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276 >gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013] Length = 301 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 24 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 82 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 83 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 143 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 201 GSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 261 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298 >gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis 8013] Length = 283 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202] gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202] Length = 274 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 140/283 (49%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + IP A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQIPFTANKFEK------------NYILRTSLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 KTAPVNELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L+IEW H ++MTG+A ++G Sbjct: 228 GIMQGLLDSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDG 270 >gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L] gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L] Length = 281 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 146/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R ITS+ A+ + D ++ Q+ + D Sbjct: 1 MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQEGT-DYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ +FL + + T+ G+++ + DG + VDM Sbjct: 60 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119 Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P L IP LA + K+ I L VSMGNPH I FVED Sbjct: 120 GMPQLSAAQIPTVLAEADQKVINTPIEIADK----LWEVTCVSMGNPHCITFVED-ADAI 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G L H +F + N +V + L +R WERG G T ACG+ ACASVVA Sbjct: 175 PLETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 K++R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 235 TQKSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKL 276 >gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39] Length = 295 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64 ++F K G+GN ++ID R + I + D + +I D + D + Sbjct: 11 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120 RI N DGSE + CGNG+RC+ +F+ + ++ T G++ + DG + VDM Sbjct: 71 RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177 G P L IP S + + V P+ VSMGNPH I FV DD+ Sbjct: 131 GLPRLLAAEIPTTLS-----ENSLKVIDVPLQVAGQPWSVTCVSMGNPHCITFV-DDVAS 184 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 185 VPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGV 244 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + +R V+V++ GG L IEW + ++MTG A++ ++G+L Sbjct: 245 LTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQL 287 >gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125] gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125] Length = 286 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 26/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGC------HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 F KM G+GN + +D C + + + A+ + D ++LI A V Sbjct: 3 FTKMHGLGNSYIYVD---CFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPVK 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDG--- 114 +R+ N DGSE ++CGNG+RCV +F +K SF ET+ G++ A N +G Sbjct: 60 --MRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVD 117 Query: 115 SISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +++V+MGEP L IP L ++ + F IG + VSMGNPHAI F+ D Sbjct: 118 TVTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRLT----AVSMGNPHAIMFI-D 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + G LL KH F + VN+ +V S + R WERG G+T ACG+ ACA+V Sbjct: 173 TIEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAV 232 Query: 234 VAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VAS + + V+V +LGG L I W +N V MTG A+ EG Sbjct: 233 VASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEG 278 >gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 143/278 (51%), Gaps = 15/278 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 +S + F KM G GN +VID RG +++ AL FDQ+ I D + A D Sbjct: 7 TSGLGFMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHEGA--D 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RCV ++ + R + T RG L A DG +SV+MG Sbjct: 65 FALDFWNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPLAR + P + P V MGNPH IFFVED DLA Sbjct: 125 APQLLWSEIPLARD----------VVPDSLPLAGAPAAVGMGNPHCIFFVED-AEAVDLA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + P+F E N+ A + + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 GQGAAVETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V ++M GG L ++W ++ V+++G +EG+L Sbjct: 234 TGRQVVLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRL 270 >gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385] Length = 301 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 24 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 82 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 83 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 143 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 201 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 261 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298 >gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] Length = 283 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 149/283 (52%), Gaps = 17/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN +V++ G +++ A D D I+L+ D + Sbjct: 6 FTKMHGLGNDFIVVN--GFKEDVRIIFKKAEKICDRHVGIGADGILLV--LPSDKCDLKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118 RIIN DGSE CGNG+RC R+ SR + + S T ET+ G++ + K++R S+ V Sbjct: 62 RIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVRV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG L K IP+A + ++ D I + +F VSMGNPH + FV DD+ + Sbjct: 122 DMGCYSLQKKDIPVAGNPNEEAVD-LEISVDDRVFKFTG--VSMGNPHCVIFV-DDVESF 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + FG ++ +HP+F + N+ + L +R WERG GLT ACG+ ACAS VA+ Sbjct: 178 PVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAYK 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V+V + GG L IE N V+MTG A + + G +D+ Sbjct: 238 KGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDL 280 >gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58] gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58] Length = 283 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] Length = 290 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 156/292 (53%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D +T D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116 +RI N DGSE ++CGNG+RCV ++ ++ +SF ET+ G++ A+ EN + S+ Sbjct: 63 -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSV 121 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMGEP L IP+ +++ + F I + VSMGNPH IF+V DD+ Sbjct: 122 TIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT----AVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ K F EGVN+ V S L R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 S KT R V V + GG L I W + V MTG A+ G + G+ Sbjct: 237 SVLNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQ 288 >gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] Length = 283 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 47/300 (15%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---------NTHFDQIMLIH 53 ++++ F+KM+G+GN +VID G + IT LST++ FDQ++++ Sbjct: 2 TNLLKFSKMQGLGNDFMVID--GTQETIT------LSTEEIRFWANRYFGVGFDQLLMVE 53 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111 + VD RI N DGSEVQ CGNG RC +F+ + + ET G++V Sbjct: 54 NSAQGDVDFRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYIT 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFD----------KMDRDRFHIGPVNHLFLRNPFVVS 161 G + V+MG P +P A FD +D +RF IG VS Sbjct: 114 DQGWVRVNMGAP----NFLPEALPFDMPLESEQYELDVDGERFEIG-----------AVS 158 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ V D L +A G + H +F E VN+ A + + LR +ERG Sbjct: 159 MGNPHAVLRVAD-LGAAPVAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAE 217 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++V L + + V+V + GG L IEW+ ++ V+MTG A +EG++ Sbjct: 218 TLACGTGACAAMVVLRNLGEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277 >gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] Length = 282 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 17/282 (6%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID R D + FDQ++++ Q VD RI Sbjct: 6 FSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFGYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC V+F+T + ++ +T +GI+ + N DG ++V+MG+P Sbjct: 66 FNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMGQPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-----PFVVSMGNPHAIFFVEDDLYHYD 179 + +P R +G V+++ +++ +V+MGNPHA+ +V ++ Sbjct: 126 FAPEDVPFVL------RSGEQVGAVSYIVVKDLDSAEMSLVNMGNPHAVMWV-GNVDDAP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + S+G L H F + VN+ +V + LR +ERG G T ACG+ ACA+VVA L Sbjct: 179 VESWGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRL 238 Query: 240 H--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + + V M G A + G+L Sbjct: 239 GAVASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGEL 280 >gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 12/275 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN +V+D R + D FDQ++++ DA DA +R+ N D Sbjct: 1 MNGAGNAFIVLDRRDASGPAAYGESGIAALLDVHPFDQLIVLDPSSDA--DADLRVWNRD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G EV +CGNG R L + +F + G + A+ DG+ VD+G LDW+ I Sbjct: 59 GGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWRDI 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+ D M D F + + L P VSMGNPH +F V DD+ LA G + Sbjct: 119 PLSLPMDTMRLD-FGVNLPDGGRLEGPGAVSMGNPHVVFAV-DDVLALPLAEIGPCIEHD 176 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK---TNRAVS 247 P+F + VN A+V + + L+ +ERG GLT ACG+ ACA++VA LH+ NR Sbjct: 177 PLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVA---LHRQGLVNREAV 233 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ++ GG L + W HV ++G E E LD++ Sbjct: 234 IEADGGKLPVRWDTEGHVHLSGPVVLERE--LDLR 266 >gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] Length = 276 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 146/285 (51%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + D I L+ D NT FDQ++++ D D Sbjct: 3 IQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLA-DRNTGVGFDQLLVVEPPYDPESDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N D SEV CGNG RC RF+ RMK + T G +V K + D ++V+ Sbjct: 62 YRIFNADSSEVAQCGNGARCFARFV--RMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177 MGEPI IP F ++ +I V L FV VSMGNPH + V D++ Sbjct: 120 MGEPIWAPAKIP----FRANAEEKTYILRVEDTTL---FVGAVSMGNPHCVTVV-DNVDT 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ G L+ H F E VN ++ S + LR +ERG G T ACGS ACA+V Sbjct: 172 FDVEGLGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGI 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + +V+V + GG L I W H ++MTG A ++G++ + Sbjct: 232 QQGLLDESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276 >gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] Length = 284 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFI 64 ++F K +G+GN ++ID R + + + D N +I S D + Sbjct: 3 IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTSNTDYTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRDG 114 RI N D SE Q CGNG+RC+ +F+ R S+ +T+ G++ + DG Sbjct: 63 RIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILADG 122 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG+P L IP + K D ++ VSMGNPH I FVED Sbjct: 123 QVKVDMGQPRLLAVEIP--TTLTKADEKVVNVPLSVAEQSWKVTCVSMGNPHCITFVED- 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + LA G HP F E N +V + L +R WERG G T ACG+ ACA VV Sbjct: 180 VAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACAVVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A +R+V+V++ GG L+IEW + ++M+G A++ + G+ Sbjct: 240 AGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQ 283 >gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca] Length = 286 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64 ++F K G+GN ++ID R + I + D + +I D + D + Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120 RI N DGSE + CGNG+RC+ +F+ + ++ T G++ + DG + VDM Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177 G P L IP + + + V P+ VSMGNPH I FV DD+ Sbjct: 123 GLPRLLAAEIP-----TTLSENSLKVIDVPLQVAGQPWSVTCVSMGNPHCITFV-DDVAS 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 VPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + +R V+V++ GG L IEW + ++MTG A+ ++G+L Sbjct: 237 LTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279 >gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] Length = 283 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAV-SQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+T + +K ET +G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G L+ H F E VN+ +V + LR +ERGVG T ACG+ ACA+V A G L Sbjct: 183 GPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280 >gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 144/282 (51%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV GNG RC RF+T + +K + T +G +V D I Sbjct: 56 LDFHYRIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP A F+K R I V VSMGNPH + V DD+ Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN ++ + E + LR +ERG G T A GS ACA+V Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270 >gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 277 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ H S+ +S + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYVNCFQEHIENPSEVSRRIS---DRHFGIGSDGLILIKSSEKA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD-GSIS 117 + + N DGS+ CGNGMRCV ++ LT + + T I+ + + EN+ + Sbjct: 58 MEMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V D++ + Sbjct: 118 VNMGEPVLETKAIPMIYEGEKVISQPFNVGQDIYEIT----AVSMGNPHAVVYV-DNVKN 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 173 LPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 233 LNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] Length = 301 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 24 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 82 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 83 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 143 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 201 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 261 E-GKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298 >gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3] gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3] Length = 269 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 11 MEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN +V+D G N+ + D I L+ + FDQ++L+ D +D RI Sbjct: 1 MHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+MG P+L Sbjct: 59 NADGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPML 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + IP + K+++ + VSMGNPH + V DD+ + D+ + G+ Sbjct: 119 EPSKIPF--NAKKVEKTYLLMASTGTYLCG---AVSMGNPHCVIDV-DDVANTDVDTIGS 172 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV K R Sbjct: 173 ELTQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERN 232 Query: 246 VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V V + GG L+I W + ++MTG A+ ++G++ Sbjct: 233 VRVDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267 >gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 249 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 15/239 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETI---- 102 L++ D +RIIN DGSE + CGN +RCV +++ + T +TI Sbjct: 15 LVYILPSKESDFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGI 74 Query: 103 -RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 R + K+ + ++ VDMGEPIL+ IP + + + + + F VS Sbjct: 75 QRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVS 130 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + +V DD +L +G LL HP+F + +N+ A V S + + +R WERG G Sbjct: 131 MGNPHCVIYV-DDAVTMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMRVWERGAGP 189 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++VAS + T+R ++ + GG L IEW++ +NHV+MTG A + ++G+L Sbjct: 190 TLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 248 >gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] Length = 274 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP D + +P F + +R +I H L VVSMGNPH + V DD+ ++ Sbjct: 120 EPNFDPQTVP----FKAIKAERTYIFRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 173 ALLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQE 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 233 LLSEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7] gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7] Length = 277 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 153/286 (53%), Gaps = 23/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN + +D + I+ +D HF D ++LI + A D Sbjct: 3 FTKMHGLGNDYIYVDATSQKIE-NPNEISRFVSD--RHFGIGSDGLVLILPSEIA--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV +F+ + + + T ET+ GI + + ++ + Sbjct: 58 MRMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVK 117 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL + IP L+ +D + I ++ + N VSMGNPHAI ++E+ + Sbjct: 118 VDMGEPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VS 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + L G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 172 EFPLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVAS 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 232 VLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] Length = 283 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D D A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] Length = 276 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID H ++T + I L FDQ++L+ + D Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + + ET +G++V + DG+++VDMG Sbjct: 63 RIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + + G + VVSMGNPHA+ V D + + +A Sbjct: 123 PRFKPVEIPFVAAEEALTYPLDAAGRQCDIS-----VVSMGNPHAVQVVAD-VDTFPVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E VN ++ S E + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 LGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V GG L I W V MTG A + G++ + Sbjct: 237 DHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276 >gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] Length = 276 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC RF+ RMK + T T G L +DG ++V+ Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IPL + ++ + I H VSMGNPH + V DD+ Sbjct: 120 MGHPNFEPSKIPLKATKRELT---YIIRTEEHTVFSG--AVSMGNPHCVLEV-DDITTAQ 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V Sbjct: 174 VDILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +K V V + GG L I W+ H V MTG A+ ++G++ + Sbjct: 234 NKLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276 >gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa] gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa] Length = 281 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 13/283 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFIRI 66 F K G+GN +++D R + + A D N +I + D +RI Sbjct: 3 FVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPGINGTDYTMRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSE + CGNG+RC RF+ K+ SF+ T G++V + DG + VDMGE Sbjct: 63 FNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVDMGE 122 Query: 123 PILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+L +P + +K D + + V N VSMGNPH + F + + + Sbjct: 123 PVLKAADVPTKLAANKNDAVVKSELVVDGVTW----NVTCVSMGNPHCVTFGDLQVDSLN 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G H +F N +V S L +R WERG G T ACG+ ACA+VVA+ Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 R +V + GG L IEW ++NHV+MTG A+ ++G + + Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281 >gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 274 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180 P+ + + +P F ++ +I R F VVSMGNPH + V DD+ ++ Sbjct: 121 PVFEPQQVP----FRAAKPEKTYILRAEE---RTVFCGVVSMGNPHCVLQV-DDVLTAEV 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G +L H F E VN+ ++ S ES+ LR +ERG G T ACGS ACA+V Sbjct: 173 EVLGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 233 LLAEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDG 270 >gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] Length = 286 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 24/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G GN +VI+ + +TS I L+ + FDQ+++I A + Sbjct: 7 IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC +L RMK+ S T ET G++V +DG ISVDM Sbjct: 67 RIFNADGSEVSQCGNGARCFFHYL--RMKKLSSSNEITVETQSGMIVLSYKKDGLISVDM 124 Query: 121 GEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 G P+ D+K IP + + D + P+ SMGNPHA+ + L Sbjct: 125 GVPVYDYKQIPFISTNTTLPTVTVDDKSYEFYPI-----------SMGNPHAVIKLAS-L 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G +L K F + VN+ +V +L L+ +ERG G+T ACGS ACA+ V Sbjct: 173 QGVDLVKIGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVV 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + VSV + GG L I V + G A+ ++G+L+ Sbjct: 233 AIQKRWAQNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277 >gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] Length = 276 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 22/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +VID +T+ + ++ DQ++L+ ++D Sbjct: 3 IAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ R + + +T GI+ + DG I+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDMGV 122 Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P + IP + ++D + IG VVS+GNPH + V + Sbjct: 123 PRFAPQQIPFKVDHEADYYSLELDGQQLEIG-----------VVSLGNPHCVLRVPA-VD 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+VV Sbjct: 171 AAPVAHWGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIG 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W D V+M+G A+ +EG D+ Sbjct: 231 KRRGWLSGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276 >gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium] Length = 270 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 17/282 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D + + +++ I AL+ FDQ+++I VD Sbjct: 1 MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ + + + ET G++ N D S+ VDMG Sbjct: 61 YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120 Query: 122 EPILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 EP+ + +PL + + + + +G V S GNPH + V DD+ D Sbjct: 121 EPVFNPSDVPLIAPEESLYYSIEGYEVG-----------VFSTGNPHCVMIV-DDVEGVD 168 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + + + + N+ ++ S ++LR +ERG G T ACGS ACA+V+ + Sbjct: 169 VETIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRI 228 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V+ + GG LIE++ HVF++G A+ +EG +D+ Sbjct: 229 GQLDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270 >gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 277 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ H S+ +S + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYVNCFQEHIENPSEVSRRIS---DRHFGIGSDGLILIKSSEKA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD-GSIS 117 + + N DGS+ CGNGMRCV ++ LT + + T I+ + + EN+ + Sbjct: 58 MEMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V D++ Sbjct: 118 VNMGEPVLETKAIPMIYDGEKVISQPFNVGQDIYEIT----AVSMGNPHAVVYV-DNVKS 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 173 LPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 233 LNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] Length = 277 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 152/284 (53%), Gaps = 21/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG GN + ++ D D N HF D +++I+ A D Sbjct: 3 FTKMEGCGNDYVYVN---GFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKS-FTFETIRGI----LVAKENRDGSIS 117 + + N DGSE + CGNG+RCV +++ ++M K+ T ET+ GI L ++++ ++ Sbjct: 58 MSMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL+ +P+ DK+ + + + VSMGNPHAI FV DD+ Sbjct: 118 VNMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRIT----CVSMGNPHAITFV-DDIDS 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + K +F E VN +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 173 LDIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L IE++ D N V+MTG A+ + G+ + Sbjct: 233 LNGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276 >gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] Length = 279 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ + F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 1 MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DGSEV CGNG RC RF+T + +K T T G ++ + + Sbjct: 61 QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP +A F+K R I V VVSMGNPH + V DD+ Sbjct: 121 VNMGEPIWEPAKIPFVANKFEKNYILRTDIQTVLC------GVVSMGNPHCVVQV-DDIK 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 TANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V V + GG L IEW +FMTGEA ++G Sbjct: 234 IMQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDG 275 >gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] Length = 288 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 146/292 (50%), Gaps = 23/292 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F KM G GN +V+D G H ++T AL+ N HF DQI+++ Sbjct: 3 LQFTKMHGAGNDFIVLD--GIHQKLDLTDAQWRALA---NRHFGIGADQILIVEKSSRDD 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI+N DG EV+ CGNG RC VRF+T R ++S E + G++ K DG ++ Sbjct: 58 VDFRYRIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVT 117 Query: 118 VDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVE 172 VDMGEP L +P +D + VN R ++ VSMGNPHA+ V Sbjct: 118 VDMGEPELTPARVPFIADGLPTRAEAQDTLYGLEVNG---RTEWISPVSMGNPHAVQIV- 173 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ + + G ++ H F VN ++ ++ LR +ERG G T ACG+ ACA+ Sbjct: 174 DDVEQFPVLQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAA 233 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 VVA + V V GG L I W V MTG A +EG +D+ T Sbjct: 234 VVAGIRRGLLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLST 285 >gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1] gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1] Length = 287 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 140/285 (49%), Gaps = 22/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KME +GN +V+D ++T + I L+ DQ+++ + D RI Sbjct: 3 FTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRYRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+EV+ CGNG+RC+ RFL ET I A+ DG +SVDMG P Sbjct: 63 FNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGPPE 122 Query: 125 LDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 L+ IP + R IG VSMGNPHA+ V DD+ Sbjct: 123 LEPARIPFQAPVRQEAYRLATSRGEQTIG-----------AVSMGNPHAVLRV-DDMTGA 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A G + +HP F VN+ V + + + LR +ERGVG T ACG+ ACA+VVA Sbjct: 171 PVAELGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRL 230 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + V+V++ GG L+I W V+MTG A+ + G++++ Sbjct: 231 RDWLDAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELP 275 >gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] Length = 274 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 140/283 (49%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF++ + + R T +G +V + ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120 Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + IP +A F+K + LR VVSMGNPH + V DD+ Sbjct: 121 PIWEPAKIPFIANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQV-DDI 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL KH F E N+ ++ + LR +ERGVG T ACGS ACA+V Sbjct: 168 EQATVHQLGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW ++MTG A ++G Sbjct: 228 GIMQGVLDANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDG 270 >gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 276 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D +++ I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF L + R T RG +V + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP A+ +K R H + VSMGNPH + V + + Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--AVSMGNPHCVIEV-PSVADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+VV Sbjct: 175 ATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] Length = 277 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 142/288 (49%), Gaps = 22/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ + ++ I L+ FDQ++L+ +D +D Sbjct: 2 LLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV++CGNG RC RF+ ++ ET G L + D I VDMG Sbjct: 62 YRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDMG 121 Query: 122 EPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 P +++P D ++D + + IG VSMGNPHA+ V DD+ Sbjct: 122 VPRFAPEVVPFDAPADAPAHCLEVDGETWDIG-----------AVSMGNPHAVLRV-DDV 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A G L+ +HP F GVN+ +V S LR +ERG G T ACG+ ACA+V Sbjct: 170 AQAPVARLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAH 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V + GG L + W + + MTG A +EG++ + Sbjct: 230 GIRRGWLESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277 >gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 369 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + F K +G+GN +++D R IT + A+ + D ++ + + Sbjct: 81 ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTNGT 140 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF L + ++SFT T G++V + DG + Sbjct: 141 -DYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199 Query: 117 SVDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMGEPIL +P +K D + + +I V N VSMGNPH + F + Sbjct: 200 KVDMGEPILKASDVPTRLRENKGDAVVKAKLNIDGVTW----NVTCVSMGNPHCVTFGSN 255 Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + + +LA G H +F N +V S L +R WERG G T ACG+ Sbjct: 256 ENQDLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTG 315 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 316 ACATVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369 >gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] Length = 279 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F KM+G+GN +VID + + I ++ DQ++L + + D Sbjct: 3 VRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DGS+ + CGNG+RC+ RFL R R ETI G+ + DG ++VDM Sbjct: 63 LIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+L+ IP F R R + V +R VSMGNPHA+ V DD+ + Sbjct: 123 GAPVLEPPHIP----FRAPSRAREYELEVEGQVVRL-GAVSMGNPHAVLRV-DDVDSAPV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F VN+ +V + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 177 ETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRLRG 236 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 AV V + GG L+I W D HV+MTG A+ +EG++ + Sbjct: 237 WLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRL 278 >gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] Length = 280 Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 146/292 (50%), Gaps = 27/292 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD-ASVDA 62 F KM+ GN + +D I+S A D HF D ++LI D D Sbjct: 3 FTKMQAAGNDYVYMDT--LKAPISSPEALARRISDR-HFGVGSDGLILICPPSDPGEADF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SI 116 +R+ N DGSE + CGNG+RCV +++ ++ ET+ G+L + + G ++ Sbjct: 60 RMRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETV 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEP L K IP++ + + + N VSMGNPHA+ F+ + Sbjct: 120 TVDMGEPRLAPKDIPVSGPGEDFINRPLRV----QGRVWNVTAVSMGNPHAVVFMHG-ID 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + DL+ G HP+F N V L +R WERG G T ACG+ ACASVVA+ Sbjct: 175 NLDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287 T R V +K+LGG L IEW + NHVFMTG G + + TG+W+ Sbjct: 235 VLTGNTERKVRMKLLGGELDIEWDEATNHVFMTG-------GAVTVFTGEWL 279 >gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 276 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 148/280 (52%), Gaps = 12/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D I LS + FDQ++++ D +D Sbjct: 2 LLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC +F+ R ++ ET RG + + G ++VDMG Sbjct: 62 YRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + +P A D + + I + +L P VS+GNPHA+ V D L ++ Sbjct: 122 APSFEPQDLPFTAEPCDVL----YSIMAEDTEYLITP--VSVGNPHAVIKV-DQLIDDEV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ H F VN+ +V + + ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 AKVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+ + GG L IEW + + + MTG A+K +EG++ Sbjct: 235 WLSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQI 274 >gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] Length = 281 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KMEGIGN + ID +T + I +S + D ++ I + + D + + Sbjct: 6 FTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMMDM 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISVD 119 N DGS + CGNG+RCV +++ K+ ET GIL + N+ +SVD Sbjct: 64 YNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P+L IP+ ++ D+ IG N F VSMGNPH + FV DD + Sbjct: 124 MGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSDEF 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 179 PVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNL 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 239 TRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945] gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18] gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140] gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1] gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945] gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 283 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D D A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] Length = 279 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 147/298 (49%), Gaps = 45/298 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56 ++F K G+GN ++ID R S ++ L+ + + HF D ++ + Sbjct: 3 IEFTKYHGLGNDFILIDNR-------SSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGE 55 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENR 112 + + D +RI N DGSE + CGNG+RC+ FL + S+ T+ G++ + Sbjct: 56 NGT-DYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLS 114 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSM 162 DG + VDMG P L IP + PV + P V+M Sbjct: 115 DGLVKVDMGLPRLLAGEIPTT------------LAPVEEKVISVPLEVAGKTWEVTCVNM 162 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPH I FVED + +L S G HP F + +N +V + L +R WERG G+T Sbjct: 163 GNPHCITFVED-VAAIELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGIT 221 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ACG+ ACAS+VA K +R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 222 LACGTGACASLVAGVLTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279 >gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] Length = 281 Score = 151 bits (382), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 15/286 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +++F K +G+GN +++D R + + AI D ++ Q A D Sbjct: 2 VLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADY 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ RF+ K+++ T+ G++ + D + V Sbjct: 61 TMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRV 120 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMGEPIL IP L S + + + VSMGNPH I FVED + Sbjct: 121 DMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVT----CVSMGNPHCITFVED-VA 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G HP F + +N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 176 AIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAG 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +R +V++ GG L IEW +NH++MTG A ++G++ + Sbjct: 236 VLTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281 >gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] Length = 283 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGN HA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNSHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 282 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 149/300 (49%), Gaps = 39/300 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDF 55 M ++F K G+GN ++ID R IT + A+ D HF D ++ Sbjct: 1 MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPE--KAVEMCDR-HFGIGADGVIFALPG 57 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKE 110 ++ + D +RI N DGSE + CGNG+RC+ FL SR K ++ T+ G++ + Sbjct: 58 ENGT-DYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQL 115 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VV 160 DG I VDMG P L IP +I + + P V Sbjct: 116 TPDGQIKVDMGLPRLLAGEIPT------------NIAAADQKVINQPLEVEGKTWEVTCV 163 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 SMGNPH I FVED + L + G HP F + N +V S + L +R WERG G Sbjct: 164 SMGNPHCITFVED-VAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAG 222 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +T ACG+ ACAS+VA+ +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 223 ITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282 >gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70] Length = 274 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG I ++MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTSIQTVLC------GAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V V + GG L+IEW +FMTG+A ++G Sbjct: 234 LDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDG 270 >gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 279 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 15/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +V+D + + A+ D +M++ + D + Sbjct: 1 MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVV--LPSETADIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDGSISV 118 R N DG+E + CGNG+RC R+L R+K++ FT ET+ GI+ + + + ++ V Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYH 177 DMG P+L IP+ R F +R P+ VSMGNPHA+ FV DD H Sbjct: 119 DMGVPVLTGDDIPV-RGFGT---ERVIAAPITVAGRTYKMTCVSMGNPHAVIFV-DDAEH 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G H +F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTG 273 >gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa] gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa] Length = 314 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 142/293 (48%), Gaps = 18/293 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VD 61 S + F K G+GN +V+D R + D N +I + D Sbjct: 26 SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVNGTD 85 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC RF+ KR+SFT T G++V + DG + Sbjct: 86 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQVK 145 Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 VDMGEP+L +P + +K D + + V N VSMGNPH + F Sbjct: 146 VDMGEPVLKAANVPTKLASNKNDAVVKSELVVDGVTW----NVTCVSMGNPHCVTFGTKG 201 Query: 173 -DDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +DL +LA G H +F N +V S L +R WERG G T ACG+ A Sbjct: 202 GEDLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGA 261 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA+VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 262 CATVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314 >gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] Length = 283 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D D A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] Length = 269 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 35/291 (12%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R N AI + D ++LI A D Sbjct: 2 TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ ++L + T ET+ GI V K + + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVKA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172 ++VDMG P+ + FD ++F PFV VSMGNPH + FV Sbjct: 120 VTVDMGVPLETGTI-----DFD----NKF------------PFVSTQVSMGNPHLVTFV- 157 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ DL G L +HP+F + N+ A++T + +R WERG G+T ACG+ ACA+ Sbjct: 158 DDIRSIDLPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA+ +T R V + M GG L I+W + NHV+MTG A K ++G ++++ Sbjct: 218 AVAAHLTGRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELR 268 >gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 274 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 140/277 (50%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS N FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V K + D ++V+MGE Sbjct: 61 RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP F + ++ +I H L VSMGNPH + V DD+ + Sbjct: 121 PIFEPSKIP----FKAVKAEKTYIMRAAEHTILCG--AVSMGNPHCVLQV-DDVETALVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 TIGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V + GG L I W +N +FMTG A ++G Sbjct: 234 LDENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDG 270 >gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] Length = 276 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 144/281 (51%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D ++ + I ++ + HF DQ++L+ Q D Sbjct: 5 FTKMHGAGNDFVVLDGVRQSVALSPEQIRYIA---DRHFGIGCDQVLLVEKTQRDEADFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ + DG I+V+MG Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI D IP ++ + +G + VVSMGNPHA+ V DD+ +A Sbjct: 122 LPIFDPAQIPFVSDSTEVIQP-LQVGNESVQIT----VVSMGNPHAVQVV-DDVETAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F + VN+ +V E + LR +ERG G T +CG+ ACA+VVA Sbjct: 176 TQGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + + V MTG A +EG++++ Sbjct: 236 LDNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276 >gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 16/280 (5%) Query: 6 VDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +V+D + N++ A D ++L+ + A D Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVD 119 +RIIN DGSE + CGN +RCV R+ + +K ET+ GI+ + + + VD Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHY 178 MG PIL + IP+A ++ + +I P+ L + F VSMGNPHA+ FV D L Sbjct: 119 MGRPILKPQEIPVA-----VEEEPVNI-PLEVLGQKFYFTAVSMGNPHAVIFV-DSLAKI 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L +G L+ HP+F N+ + S + + WERG G T ACG+ A A VVA Sbjct: 172 ELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRI 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L V V + GG L I W V+MTG A+ ++G+ Sbjct: 232 LGHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGE 271 >gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 281 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KMEGIGN + ID +T + I +S + D ++ I + + D + + Sbjct: 6 FTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMMDM 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISVD 119 N DGS + CGNG+RCV +++ K+ ET GIL + N+ +SVD Sbjct: 64 YNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P+L IP+ ++ D+ IG N F VSMGNPH + FV DD + Sbjct: 124 MGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSDEF 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 179 PVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNL 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 239 TGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] Length = 284 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ G+GN ++++ +G D+ ++ A D ++L++D D + Sbjct: 3 FTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYD--SGVADVRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118 +I+N DGSE + CGN +RCV ++L +K+ ET+ GI+V + E ++ V Sbjct: 61 KIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAVRV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP ++ IP+ ++ + + +L VSMGNPH I FV DL Sbjct: 121 DMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYLVT----AVSMGNPHCIIFV-PDLEDI 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + HP F + N+ +V + + WERG G T ACG+ ACA VA Sbjct: 176 SLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAGVL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V+V + GG L+IEW +N ++MTG A + + G+ + Sbjct: 236 NGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTV 278 >gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] Length = 274 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 142/279 (50%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I + FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VVSMGNPH + VE+ + ++ Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTDIQTVLC------GVVSMGNPHCVLQVEN-IQTANVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW + ++MTG+A+ ++G + Sbjct: 234 LDSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDGAV 272 >gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17] gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17] Length = 328 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 148/298 (49%), Gaps = 20/298 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ F KM G+GN +V+D + + I L+ FDQ++++ VD Sbjct: 33 GGVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVD 92 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ + +K +T GI+ + +DG + VD Sbjct: 93 FRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVD 152 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVEDDL 175 MG P L+ +P + D F PV +L + VVSMGNPH + DD+ Sbjct: 153 MGVPRLEPATVPFSA-------DEF--APVYNLDVNGQNIELSVVSMGNPHGVILT-DDV 202 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A+ G LL KH F N+ ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 203 DSAPVATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVA 262 Query: 236 SGCLHK-TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 GCL + V V++ GG L+IEW V M G +EG+L + +++ + Sbjct: 263 -GCLRGLLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPAEPGMRRRK 319 >gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] Length = 278 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 18/281 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID RG D + S A D ++L+ D + A D +RI Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SISVD 119 IN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + N G + V+ Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNPHAIFFVEDDLYH 177 MG+P K IP+ + D + I + + + S MG PH + FV DD+ Sbjct: 121 MGKPSFKRKDIPM-----QGDPESDAINTSIEVDGKEYKITSLLMGVPHTVLFV-DDVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW D+ VFMTG A++ + G+ Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGE 275 >gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] Length = 282 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 146/287 (50%), Gaps = 18/287 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ + F KM G+GN +V D ++T + I ++ DQ++++ Q D Sbjct: 6 TTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQHPEND 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV++CGNG RC +F+ + + + ET+ G+L +R G ++VD Sbjct: 66 FRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQGDVTVD 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175 MG P+L IP ++ D L L + + +SMGNPHA+ V D++ Sbjct: 126 MGVPVLTPAEIPFNADSQAVNYD---------LALADQTISISAISMGNPHAVTLV-DNV 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G L+ H F VN V S ES+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 176 DTAPIEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+ + GG L IEW H V MTG A ++G++ I Sbjct: 236 GHLQGLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282 >gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 274 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270 >gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 407 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 147/293 (50%), Gaps = 21/293 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 S +DF K +G+GN ++ID R S A D N D ++ DAS Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+ N DGSE + CGNG+RC+ RF++ M K + T+ G++ + DG ++V Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235 Query: 119 DMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---- 171 DMG PI + +P LA + D K+ R + +L N VSMGNPH I F Sbjct: 236 DMGMPIFEPSEVPTTLAATQDGKVVRAEMDVD--GEKWLVN--AVSMGNPHCITFGRAGG 291 Query: 172 EDD-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 E D L + L+ G HP F N +V + + + WERG G T ACG Sbjct: 292 EADGPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACG 351 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + ACA+VVA + +R +V++ GG L IEW +++ + MTG A+ + GK Sbjct: 352 TGACATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGK 404 >gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] Length = 279 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T D I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPD 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + ++ T +G ++ + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170 V+MGEPI + +P A F+K + LR VVSMGNPH + Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + + G LL H F E N+ +V + + LR +ERG G T ACGS AC Sbjct: 169 VED-IKTAPVNELGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GAVAVGIMQGLLDSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDG 275 >gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] Length = 274 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP D + +P + K ++ + VVSMGNPH + V DD+ ++A Sbjct: 120 EPNFDPQSVPFRAT--KAEKTYIFRAAEQTVLCG---VVSMGNPHCVLQV-DDVAVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S +++ LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V+V++ GG LLI W H ++MTG A ++G Sbjct: 234 LDEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDG 270 >gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 279 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T S ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170 V+MGEPI + +P A F+K + LR VVSMGNPH + Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + + G LL H F E N+ +V + + LR +ERG G T ACGS AC Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275 >gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus] Length = 285 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 28/290 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 + +V F+K +G+GN +++D R + + + +A D D ++ D + Sbjct: 4 TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118 D +RIIN DGSE + CGNG+RC+ RFL K+ + T+ G ++ DG ++V Sbjct: 63 DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNPHAI 168 DMG P L+ +P + + + L+ P VSMGNPHA+ Sbjct: 123 DMGPPELNGPKVPSTLPTND-----------DGVVLKEPIKVDGKDWEVTCVSMGNPHAV 171 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV D + DL + G HP F +N +V + + + WERG G+T ACG+ Sbjct: 172 VFVPD-VDALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTG 230 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277 ACA VVAS +R +V + GG L IEW +++ V+MTG A+ ++G Sbjct: 231 ACALVVASVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280 >gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] Length = 283 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 140/277 (50%), Gaps = 7/277 (2%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V++ + D + + FDQ +++ +VD RI Sbjct: 6 FTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+MG+P Sbjct: 66 FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP + + + HI V L V+MGNPHA+ V DD+ + +G Sbjct: 126 FMPSEIPFVPAHGENEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DDVETAPVEHWG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242 ++ H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA L K Sbjct: 184 GVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKA 243 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 244 GAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280 >gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] Length = 368 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 14/286 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R ++ITS + + + F D ++L Q Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQGQ 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RFL + +S+ ET G ++ + +DG Sbjct: 61 G-DLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L + +P S D+ R + + V MGNPH + V DDL Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEV--TREGLTLSLAAVGMGNPHVVVPV-DDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L P+F N+ +V S + L++R WERG G T ACG+ ACA++VA Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 + L ++ +V + GG L I W D VFMTG A ++G ++ Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMN 282 >gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5] gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5] Length = 277 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 15/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN + +D + I+ +D + L+ D +R+ Sbjct: 3 FTKMHGLGNDYIYVDAISQKIE-NPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMF 61 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121 N DGSE + CGN +RCV +F+ + + + + ET+ GI V + + + VDMG Sbjct: 62 NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKVDMG 121 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EPIL + IP L+ +D + I ++ + N VSMGNPHAI ++E+ + + L Sbjct: 122 EPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VEEFPL 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F + N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 176 EKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVLKG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L+IEW++ +NH++MTG A +EG++DI Sbjct: 236 YVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277 >gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] Length = 281 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID ++ D + ++ DQ++L+ + S D RI Sbjct: 5 FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ + S ET+ G + + + VDMG Sbjct: 65 YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D +P + D + H L + VSMGNPHA+ +V D++ +A Sbjct: 125 PRFDPSALPF-----EADAEAAHYALDTAGQLLDIGAVSMGNPHAVLWV-DEIQEAPVAE 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN A+ S + LR +ERG G T ACG+ ACA+V K Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 +R V+V + GG L I W D++ + MTG+A +EG +D+ + Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280 >gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579] gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579] Length = 288 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L S R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGESETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] Length = 286 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F K +G GN +V D RG + N ++ I + N F D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115 I I N DGSE Q CGNG+RC+V +L + +K K + ET G+ +AK D Sbjct: 64 YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIND-K 121 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+V MG PIL+ + IP + + + + F + F + V MGNPH IFFV+D Sbjct: 122 ITVKMGVPILESQNIPTTIEKKINSIPSHEF----IEKNFKYIGYAVGMGNPHLIFFVQD 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA Sbjct: 178 -IESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIH 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ L N V + GG L I+W D+ V MTG AK+ + G + Sbjct: 237 VAAYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283 >gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] Length = 280 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 149/290 (51%), Gaps = 22/290 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 ++ + F KM+G GN + ++ + D I A H D ++LI + A Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTL---SSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + + Sbjct: 59 --DFSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGV 116 Query: 117 ----SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +VDMG P+L +A M + P + + FV MGNPH + FV Sbjct: 117 VKDVTVDMGTPLLS-NPGQIATKTGGMLAETI---PADGKEYKGTFVC-MGNPHVVIFV- 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ DL + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ Sbjct: 171 DDIKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACAT 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VA+ HK R V+M GG L I W++ + HV+MTG A K +EG++++ Sbjct: 231 AVAAVLNHKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIEM 280 >gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis Length = 308 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 22 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 81 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 82 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 139 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 140 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 194 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 195 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 254 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 255 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305 >gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] Length = 302 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 142/289 (49%), Gaps = 16/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D + + L+ + HF DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLA---DRHFGVGADQILSVRPSPAPGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG+EV+ CGNG RC RF+ R ++ S +T+ G++ + DG ++VD Sbjct: 60 FEYVIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVD 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIG----PVN-HLFLRNPFVVSMGNPHAIFFVED 173 MG PI D +P A +D+ H PV+ N V+SMGNPHA+ V D Sbjct: 120 MGAPIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIVAD 179 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + G + +H F VN +V + + + LR WERG G T ACG+ ACA+V Sbjct: 180 -VDAAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAV 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA L V V GG L IEW + V MTG A + G++D+ Sbjct: 239 VAGIRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVP 287 >gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] Length = 276 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM G+GN +V+D +++ + + L+ + HF DQI+L+ +D Sbjct: 5 FSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLA---DRHFGVGCDQILLVEKASQPGIDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ ++ ET+RGI+ + DG+++VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + +P F D H+ V L VVSMGNPHA+ V D + + Sbjct: 122 IP----RFLPAEIPFLAEDDVIIHLLDVADETLETS-VVSMGNPHAVQVV-DSVDTAPVG 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ KHP F VN ++ ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 176 EHGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRGL 235 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W D V MTG A + G++++ Sbjct: 236 LDSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276 >gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 274 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T S ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270 >gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] Length = 281 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 149/288 (51%), Gaps = 21/288 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +G+GN ++ID R + + + + D HF D ++ Q A D Sbjct: 3 IPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDR--HFGIGADGVIFALPGQ-AETD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI 116 +RI N DGSE + CGNG+RC+ +F+ +R++ +++ T+ G ++ + + + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAQFI-ARLEANNAIGRTYRIHTLAGTIIPRLEANEQV 118 Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +VDMG P L IP L + +K+ + + L VSMGNPH + FV D Sbjct: 119 TVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVT----CVSMGNPHCVTFV-GD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L L + G HP+F + N+ V + + + +R WERG G+T ACG+ ACA VV Sbjct: 174 LASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 A+ K +R +V++ GG L I W +N V+MTG AK +EG I Sbjct: 234 AALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281 >gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] Length = 394 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 146/313 (46%), Gaps = 29/313 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNT---HFDQIMLIHDFQ-D 57 M+ + K +G+GN L++D RG D ++ ++A TDD ++I + D + Sbjct: 1 MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60 Query: 58 ASVDAFI-------------RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFET 101 D I RI N DGSE + CGNG+RC+ RFL + + + ET Sbjct: 61 IGADGLIVAAPPREGGELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVET 120 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + G +V + DGS+ VDMG+P L + +P + + F Sbjct: 121 LAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESFQVG--AAG 178 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + V D L DL FG L HP F N+ +V + L +R WERG G Sbjct: 179 MGNPHVVIPVPD-LEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAGP 237 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T ACG+ ACA++V L R+ + + GG L I W ++HV+MTG A+ ++ Sbjct: 238 TLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAV-- 295 Query: 281 IKTGKWIKKNEDD 293 I W + DD Sbjct: 296 IAPSLWDPEGVDD 308 >gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 293 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 21/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTH----FDQIMLIHDFQDAS 59 M+ F KM G+GN +++D R I +D ++ A S + DQ+++I +A Sbjct: 1 MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS---I 116 D F++I+N DGS +CGNG RCV ++ + ET +L A+ +R G I Sbjct: 60 -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG LDW+ +PLA++ D + D P + SMGNPHA+ FV DD+ Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAPALAV------CQSMGNPHAVMFV-DDVA 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G L +F + N+SI + +R WER VG+T ACGS ACA VA+ Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 R + M GG ++IEW DN V MTG G LD Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279 >gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] Length = 276 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 142/278 (51%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + D + L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP ++ ++ +F SMGNPH + V DD+ D+ + Sbjct: 123 PIFDPAKIPFRA--NQAEKTYILRAGDQTVFCG---AASMGNPHCVTVV-DDVLTADVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN+ +V S + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + V+V + GG L I W+ N +++FMTG ++G++ Sbjct: 237 DEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274 >gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] Length = 307 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 20 FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERATRPDVDFR 76 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 77 YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 136 Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P RD H VN R ++ VSMGNPHA+ V DD Sbjct: 137 APVFEAARLPFVPDGLPTRVEGRDAQHALQVND---RTAWLSTVSMGNPHAVQVV-DDAE 192 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GGGL I W + V MTG A +EG LD+ Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 298 >gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] Length = 307 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 20 FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 76 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 77 YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 136 Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P RD H VN R ++ VSMGNPHA+ V DD Sbjct: 137 APVFEAARLPFVPDGLPTRVEGRDAQHALQVND---RTAWLSTVSMGNPHAVQVV-DDTE 192 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GGGL I W + V MTG A +EG LD+ Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 298 >gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066] gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055] gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North America USA6153] gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B] gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum] gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94] gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] Length = 288 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] Length = 274 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP D + +P F ++ +I H L VVSMGNPH + V DD+ ++ Sbjct: 120 EPNFDPQTVP----FRATKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 173 ALLGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQE 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 233 LLAEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] Length = 292 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 141/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L+ + HF DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VD Sbjct: 60 FEYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNP------FVVSMGNPHAIF 169 MG P+LD +P FD G V L + P VSMGNPHA+ Sbjct: 120 MGRPVLDPARLP----FDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQ 175 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V DD+ +A G L+ HP F + VN +V + LR +ERG G T ACG+ A Sbjct: 176 LV-DDVDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGA 234 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 CA+VVA L + V V GG L I W + VFMTG A +EG++DI Sbjct: 235 CAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289 >gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399] gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399] Length = 287 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 21/287 (7%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 Q ++F K +G GN +V+D D D + HF D +M++ Sbjct: 5 QGKTMEFTKWQGCGNDFVVVDFL---DREPVDFAALAVRMCDRHFGIGADGLMVV--LPS 59 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----EN 111 + D +R N DG+E + CGNG+RC R+L R++++ FT ET+ GI+ + + Sbjct: 60 ETADIRMREFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDG 119 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 + ++ VDMG P+L IP+ R F +R P+ VSMGNPHA+ F Sbjct: 120 KVTAVEVDMGVPVLTGDDIPV-RGFGT---ERVIAVPITVAGEEYKMTCVSMGNPHAVIF 175 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD H+ LA G H +F +N V +R WERG G+T ACG+ C Sbjct: 176 V-DDAEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTC 234 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 A++ A +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 235 ATLTAGVLTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTG 281 >gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W] gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102] gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W] gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102] Length = 288 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] Length = 277 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN ++ID IT + L+ + HF DQ++++ D Sbjct: 5 FTKMHGLGNDFVMIDAISQRVTITPERARQLA---DRHFGVGCDQVLVVETPDSPDADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC F+ R + T ET G +V D ++VDMG Sbjct: 62 YRIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL IPLA + + P VSMGNPHA++ V +D + Sbjct: 122 APILSPADIPLAAP----QQATSYTLPTQGAGDITIGAVSMGNPHAVYCV-NDCKTAPVE 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F + VN +V S ++LR +ERG G T ACG+ ACA+VVA Sbjct: 177 TLGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++ V MTG A + G++ I Sbjct: 237 LENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277 >gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 279 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170 V+MGEPI + +P A F+K + LR VVSMGNPH + Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + + G LL H F E N+ +V + + LR +ERG G T ACGS AC Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275 >gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] Length = 282 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 30/285 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G+GN + I++ H + + A+ + D ++LI ++ Sbjct: 1 MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTSCAIK- 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGS 115 +RI N DGSE ++CGNG+RCV ++ + K+F+ ET+ G + A +E R G+ Sbjct: 60 -MRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIF 169 ++++MG+P L + IP+ DK PV L VSMGNPHA+ Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDK---------PVVGEKLEANGETVQVTAVSMGNPHAVM 169 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVE + + S G ++ KH F + VN V S L R WERG G+T ACG+ A Sbjct: 170 FVEQ-IEKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGA 228 Query: 230 CASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 CA+VVAS K V+V +LGG L I W +N V M G A+ Sbjct: 229 CAAVVASVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAE 273 >gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] Length = 292 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 121 Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P RD H VN R ++ VSMGNPHA+ V DD Sbjct: 122 APVFEAARLPFVPDGLPTRVEGRDAQHALQVNG---RTAWLSTVSMGNPHAVQVV-DDTE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GGGL I W + V MTG A +EG LD+ Sbjct: 238 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 283 >gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] Length = 275 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 151/284 (53%), Gaps = 16/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+ Sbjct: 59 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVN 118 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG PILD IP A+ F+K + + FL VSMGNPH + V DD+ Sbjct: 119 MGVPILDPAQIPFKAKKFEKT----YLLQSAQQTFLCG--AVSMGNPHVVLEV-DDITQA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A G L +H F +GVN+ +V + + + LR +ERG T ACGS ACA+ V Sbjct: 172 PVADVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQL 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V V + GG L I W + ++MTG A++ ++G++ + Sbjct: 232 QGKLGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275 >gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] Length = 288 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 146/288 (50%), Gaps = 23/288 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 F KM G GN +V+D G H I T AL++ HF DQI+++ VD Sbjct: 5 FTKMHGAGNDFVVLD--GIHQQIDLTPAQWRALAS---RHFGVGADQILIVEKPTRPDVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VD Sbjct: 60 FRYRIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVD 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDR--DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDD 174 MG P L+ +P A+ D + VN R ++ VSMGNPHA+ V DD Sbjct: 120 MGAPELEPARVPFRAQGLPTHAEGADALYGLEVNG---RTEWISAVSMGNPHAVQVV-DD 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + ++ + G ++ HP F VN +V ++ LR +ERG G T ACG+ ACA+VV Sbjct: 176 VENFPVLQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVV 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 A + V V GG L I W V MTG A +EG +D+ Sbjct: 236 AGIRRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDL 283 >gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 278 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 30/287 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID RG D + S A D ++L+ D + A D +RI Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SISVD 119 IN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + N G + V+ Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKVN 120 Query: 120 MGEPILDWKLIPLARSFD--------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 MG+P K IP+ D ++D + I + MG PH + FV Sbjct: 121 MGKPSFKRKDIPMQGEPDSDAINTSIEVDGKEYKITSL-----------LMGVPHTVLFV 169 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ D+ + G + +H +F N++ +V ++ +RTWERG G T ACG+ +CA Sbjct: 170 -DDVEKVDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCA 228 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 SV+AS T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 229 SVIASNLNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGE 275 >gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] Length = 290 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 140/283 (49%), Gaps = 22/283 (7%) Query: 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +++ D N A+ + + D + L+ + A+ +RI Sbjct: 3 FTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAAFR--VRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----------LVAKENRDGSI 116 N DGSE + CGN +RC ++L K T ET+ + L + S+ Sbjct: 61 FNPDGSEAELCGNLLRCAGKYLYE----KGHTGETVIPVEMYDKIKVLRLAVTDGVVQSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ L+P+A + + + F+ VSMGNPH + FV D+ Sbjct: 117 EVDMGEPILESDLVPVAGKRRQAVNE--EVTASGEKFVMT--AVSMGNPHCVIFV-DETA 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L ++G L HP F + N+ V S + R WERG G T ACGS ACA +VA Sbjct: 172 AVPLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAG 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K NR ++ + GG L IEW D+NHV+MTG A + + G+L Sbjct: 232 VLSDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGEL 274 >gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 279 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170 V+MGEPI + +P A F+K + LR VVSMGNPH + Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + + G LL H F E N+ +V + + LR +ERG G T ACGS AC Sbjct: 169 VED-INLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275 >gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] Length = 280 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 21/278 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 V F KM G+GN ++ID R + + + + HF DQ+++I + A V+ Sbjct: 11 VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIG---DRHFGVGYDQLVVITKSKKADVE 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RCV + + + T +T G+LVA++ ++ ISV+MG Sbjct: 68 --VVFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMG 125 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P LDW +IPL D ++ P+ +P V +GNPH +F V DD+ DL Sbjct: 126 HPQLDWDVIPLKEKVDLIEL------PIEG----SPGAVGIGNPHCVFVV-DDVNSVDLI 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S+G+ + H +F + N+ ++ +++ RT+ERG G T ACGS ACA V + Sbjct: 175 SWGSKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R VSV + GG L I W + ++MTG ++G L Sbjct: 235 TERNVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVL 271 >gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As] Length = 287 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 V F KM G GN +V+D +++ + L+ + HF DQI+L+ VD Sbjct: 3 VAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLA---DRHFGVGADQILLVEAAPSPEVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VD Sbjct: 60 FGYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVD 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177 MG P+ D +P A D + P++ + V+SMGNPHA+ V DD+ Sbjct: 120 MGAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRV-DDVDT 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA G Sbjct: 179 APVLSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVA-G 237 Query: 238 CLHK-TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 H AV V+ GG L I W V MTG A ++G +D+ Sbjct: 238 LRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284 >gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] Length = 282 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 149/286 (52%), Gaps = 23/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ C + + + HF D +++I+ + A D Sbjct: 3 FTKMQGLGNDYVYVN---CFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + + ET+ GI L ++ + + Sbjct: 58 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P L LIP+ +K+ + + G V H+ VSMGNPH + +V DD+ Sbjct: 118 VDMGKPELKSDLIPIISENEKVIDEPIEVDGQVYHMTG-----VSMGNPHTVIYV-DDVK 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + DL G H F + +N ++++R WERG G T ACG+ ACA VAS Sbjct: 172 NLDLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVAS 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + T+ V+VK+LGG L IEW NHVFMTG AK ++G +DI Sbjct: 232 ILNNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277 >gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601] gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601] Length = 292 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 141/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L+ + HF DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VD Sbjct: 60 FEYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNP------FVVSMGNPHAIF 169 MG P+LD +P FD G V L + P VSMGNPHA+ Sbjct: 120 MGRPVLDPARLP----FDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQ 175 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V DD+ +A G L+ HP F + VN +V + LR +ERG G T ACG+ A Sbjct: 176 LV-DDVDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGA 234 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 CA+VVA L + V V GG L I W + VFMTG A +EG++DI Sbjct: 235 CAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289 >gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] Length = 274 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D + +P F ++ +I H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803] gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803] Length = 288 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L + IP L R+ F NH + VSMGNPHA+ FVED Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED 175 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 176 -VEEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 275 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + ++ D I+ L+ + FDQ+++I D +D Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + +++ T +G + K DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ +P F+ ++ +I V +H L VVS+GNPH + V DD+ + + Sbjct: 123 PILEPAKVP----FEAQKEEKTYILRVEDHTVLCG--VVSIGNPHCVVLV-DDIDNAPVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F VN+ + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 176 TLGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 N ++++ GG L + W V MTG A ++G++ I Sbjct: 236 LNPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275 >gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 334 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 146/301 (48%), Gaps = 25/301 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59 +++ V F+K G+GN ++ID R + + +A+ N +I Q S Sbjct: 39 LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98 Query: 60 ------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109 D +RI N DGSE + CGNG+RC+ +FL + KS + T+ G +V Sbjct: 99 SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGN 164 N DG+I+VDMGEP L+ +P ++ + H V N V MGN Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTT-----LEANAEHDSVVEQTLEANGKTWKCTAVGMGN 213 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHAIFFV D D G L H F N+ +V + L ++ WERG G T A Sbjct: 214 PHAIFFVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLA 273 Query: 225 CGSAACASVVA---SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 CG+ ACA VA +G + + ++ V V + GG L IEW + +N ++MTG A + G+ Sbjct: 274 CGTGACALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETK 333 Query: 281 I 281 + Sbjct: 334 V 334 >gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] Length = 282 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 141/287 (49%), Gaps = 21/287 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID G + + D FDQ++L+ VD Sbjct: 4 LKFTKMHGLGNDFMVID--GINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSELVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV CGNG RC VRF+T + +K ET G++V + +G ++V+M Sbjct: 62 RYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN----PF-VVSMGNPHAIFFVEDDL 175 G+P IP + D D + H+ L P V+MGNPHA+ VED Sbjct: 122 GQPRFMPSEIPFVPDSGE-DSDA-----LTHIILVGLESVPVSCVNMGNPHAVIIVEDT- 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G + H F E VN+ ++ + + LR +ERG G T ACG+ ACA+VVA Sbjct: 175 ETAPVGQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVA 234 Query: 236 SGCLHKTNRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L + SVK++ GG L I W V MTG A+ +EG+L Sbjct: 235 GVRLGLLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGELQ 281 >gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] Length = 275 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/282 (36%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +VID H ++T + I +S FDQ++LI +A+ D Sbjct: 1 MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + +T G L+ + + D I+V+MG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180 P IPL + RF+ VN F VSMGNPHA+ V D + + Sbjct: 121 IPRHAPAEIPLLAE----EESRFYTVLVNET--EKAFGAVSMGNPHAVIQVTD-VKTAPV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L H F E VN+ +V + + LR +ERG T ACGS ACA+VV + Sbjct: 174 AELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHN 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VSV + GG L I W V MTG A +EG++ + Sbjct: 234 LLDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275 >gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20] gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 274 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270 >gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] Length = 290 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 10/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN +V+D ++ +D I L+ FDQ++L+ VD Sbjct: 15 LSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDFRY 74 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VR++ S ++ +T RGI++ + +G ++V+MGE Sbjct: 75 RIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNMGE 134 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + M ++ V L V SMGNPHA+ VE D+ + Sbjct: 135 PRFEPAEVPFIADREAMT----YLLQVADQALEIS-VASMGNPHAVTVVE-DVDTAPVER 188 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+V + Sbjct: 189 LGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRGLL 248 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 V V GG L+I W V+MTG A+ +EG +DI+ Sbjct: 249 QSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIEV 290 >gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 274 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270 >gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820] gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820] Length = 288 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 285 >gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 288 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINIGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR] gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR] Length = 277 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 11/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN ++I+ ++ + + T L+ + D +R Sbjct: 1 MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETADIQMR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGS--ISVD 119 I N DGSE + CGN +RC R+L +K+++ ET+ GI + + EN G + VD Sbjct: 61 IFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVEVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEP L+ IP+ K+ + PVN N VSMGNPH + FV D+ Y Sbjct: 121 MGEPELERGRIPMLGGPGKVVAEPL---PVNG-STYNVTCVSMGNPHCVIFV-DNAEDYP 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A+ G + H F N+ +V + + +R WERG G+T ACG+ ACAS VA+ Sbjct: 176 VAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAHLN 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 T R V V + GG L I W +NHV+M G A ++G Sbjct: 236 GFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKG 273 >gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] Length = 282 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 147/283 (51%), Gaps = 23/283 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +D G ++ A+ D HF D ++LI DA Sbjct: 3 FIKMHGAGNDYVYVD--GFQQDVHRPEELAVRISDR-HFGVGSDGLILI--LPSDCADAR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGIL---VAKENRDGSIS- 117 +R+ N DGSE Q CGNG+RCV ++L + + T ET+ G+L V + + +IS Sbjct: 58 MRMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQ 117 Query: 118 --VDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MG+P L IP+ + + D+ I N F + VSMGNPH + +V DD Sbjct: 118 VTVNMGQPRLQRGQIPM--TGPQQDQALEVEIRVKNRTFTAS--CVSMGNPHCVVYV-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +D+A +G LL HP+F E +N+ + S + RTWERG G T ACG+ A A V Sbjct: 173 VEQFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 A +T R + + GG L +E+ D+ V MTG A++ + G Sbjct: 233 AGFLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275 >gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] Length = 288 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVDQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] Length = 280 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V F KM G+GN +V+D+ +T + L + FDQ++++ + +D Sbjct: 2 LVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKS-FTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC +F+ R+ KS +T G + K + D + V+MG Sbjct: 62 YRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180 PIL +P ++ K + P++ + +SMGNPH + V D + + Sbjct: 122 APILAPVDVPF-QADQKATTYAIDV-PLSQGDQQVELSAISMGNPHGVLIV-DSTENAPV 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H F N+ +V S ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 179 ETLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRG 238 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+V + GG L IEWH + V MTG A +EG++ Sbjct: 239 VLDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQI 278 >gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] Length = 274 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 144/289 (49%), Gaps = 32/289 (11%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M N AI + D ++LI + A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---------LVAKENRD 113 RI N DGSE CGN RC+ +++ + +K+ T ET+ GI L Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRKLSGPHEEV 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P++ + + D F+ G V+SMGNPH + FVED Sbjct: 123 TEVTVDMGCPVIGETALEIEAG------DYFYTG----------TVISMGNPHLVIFVED 166 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + +L G LL HP+F N+ + S + + ++ WERG G+T ACG+ ACA+ Sbjct: 167 -ITNINLPVIGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATA 225 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VAS KT R V M GG L I W +++ HV+MTG A K +EG+L+I Sbjct: 226 VASAVRGKTGRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274 >gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 274 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GIMQGVLDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDG 270 >gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1] gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1] Length = 288 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS + R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A] gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A] Length = 279 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K +G+GN ++ID R + + + N HF D ++ + D D Sbjct: 3 FFKYQGLGNDFILIDNR--SSSELLLSSGQILKMCNRHFGIGADGVIFLLS-GDKVSDYG 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 + I N DGSE + CGNG+RC++ F+++ K + +T+ GI+ A+ + V+ Sbjct: 60 MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177 MG P+ K IP S D+D I + +N V V+MGNPH I FVED Sbjct: 120 MGTPLFLNKQIPTTLS----DKDNTVINYPLEIEKKNWLVTCVNMGNPHCITFVEDTNL- 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L H F E +N + L +R WERG G T ACG+ ACASVVA Sbjct: 175 INLEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 ++ R +V++ GG LLIEW D+N V+MTG A++ + G+ + Sbjct: 235 ITNRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278 >gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99] gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99] Length = 274 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 21/281 (7%) Query: 11 MEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D RI Sbjct: 1 MHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG EV+ CGNG RC RF+ ++ ++ T G L + +DG+++V+MG P+L Sbjct: 59 NADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + IP F+ ++ ++ + FL VSMGNPH + VED + D Sbjct: 119 EPSKIP----FNAKRPEKTYLLQTDTAESKMQTFLCG--AVSMGNPHCVLDVED-IQAAD 171 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 172 VEGIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQ 231 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K ++ V V + GG L I W + ++MTG A+ ++G++ Sbjct: 232 GKLDKRVRVDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQI 272 >gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 288 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FVED Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED 175 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 176 -VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 274 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 137/283 (48%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175 PI + +P A F+K + LR VVSMGNPH + VED + Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L IEW H ++M G+A ++G Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDG 270 >gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] Length = 281 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 20/288 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K+ G+GN ++++ G + + D I + F D ++L+ D D Sbjct: 3 FTKVHGLGNDFILVNA-GMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLD--SGVADVR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 +RIIN DGSE + CGN +RCV ++L +++ ET+ GI+V K R ++ Sbjct: 60 MRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ + IP+ + ++ + + F VSMGNPH + FV D L Sbjct: 120 VDMGAPRLERQEIPMLGTPGQVVNEPLQVN--GQTFKIT--AVSMGNPHCVIFVPD-LSV 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + HP F N+ +V S + + WERG G T ACG+ ACA V +G Sbjct: 175 IPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACA-VATAG 233 Query: 238 CLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 L+ T R+V+V + GG L IEW DN ++MTG A++ + G+ + G Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281 >gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] Length = 281 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 145/286 (50%), Gaps = 15/286 (5%) Query: 6 VDFAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN +V++ D + I D + LI F D Sbjct: 1 MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKADIR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116 RI+N DGSE + CGNG+RC+ R++ R + ++ ET+ GI+V + D + + Sbjct: 61 WRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVTGV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L IP+ +G +R +SMGNPH + +V +D+ Sbjct: 121 CVDMGEPRLQRHQIPMVGPEGPAVNQELVVG---DAVVRV-TALSMGNPHCLIYV-NDID 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + HP F N+ +V + + + +R WERG G T ACG+ ACA+VV S Sbjct: 176 EAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVVGS 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T+R V+V + GG L IEW +NN V+MTG A + + G+L + Sbjct: 236 VLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281 >gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6] gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6] Length = 277 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 15/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN + +D + I+ +D + L+ D +R+ Sbjct: 3 FTKMHGLGNDYIYVDAISQKIE-NPNEISRFVSDRHFGIGSDGLVLILPSDLADFKMRMF 61 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121 N DGSE + CGN +RCV +F+ + + + T ET+ GI V + + + VDMG Sbjct: 62 NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKVDMG 121 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EPIL + IP L+ +D + I ++ + N VS+GNPHAI ++E+ + + L Sbjct: 122 EPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSIGNPHAITYIEN-VEEFPL 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 176 EKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVLKG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 236 YVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] Length = 278 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 18/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F+K +G GN +++D C SD A D + +++ D +R Sbjct: 3 FSKWQGCGNDFVLVD---CFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKADFRMR 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK----ENRDGSISVD 119 I N DGSE + CGNG+RC R+L +++ FT ET GILV + + + VD Sbjct: 60 IFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRVD 119 Query: 120 MGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEP+L+ + IP+ +++ + + + VSMGNPH + FVED + Sbjct: 120 MGEPVLEGEKIPVTGFGMNRVIEEDIEVKGKTYKMT----CVSMGNPHCVIFVED-AEAF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G HP F N V + + +R WERG +T ACG+ +CA+ VA Sbjct: 175 PIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +T+R V V++ GG L +EW + NHVFMTG A+ + G++D Sbjct: 235 TGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277 >gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] Length = 286 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 S+++ F KM G+GN +V+D G N+ + D I L+ + FDQ++L+ D Sbjct: 10 STLIQFTKMHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPD 67 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++ Sbjct: 68 LDFHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVT 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P+L+ IP + K+++ + VSMGNPH + DD+ Sbjct: 128 VNMGIPVLEPSKIPF--TAKKVEKTYLLLASSGTYLCG---AVSMGNPHCVI-EVDDVAA 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 182 ADVDTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGI 241 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K +R V V + GG L+I W + ++MTG A+ ++G++ Sbjct: 242 QQGKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284 >gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1] gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1] Length = 286 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 14/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC R++ + + +T+ G++ + + DG ++VDMG+ Sbjct: 63 VIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDMGQ 122 Query: 123 PILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+L+ L+P + R + +G +++ VSMGNPHA+ V DD+ Sbjct: 123 PVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAP---VSMGNPHAVQLV-DDVD 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 H +A++G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 179 HAPVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L IEW D V MTG A+ +EG++++ Sbjct: 239 IRWGLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283 >gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] Length = 275 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 19/279 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDA 58 QS + F KM G+GN +VID R DA + D FDQ+ +I ++A Sbjct: 9 QSIPLPFMKMHGLGNDFVVIDSR--RTGALPDAATVAAIADRHRGVGFDQLAVILPGENA 66 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 DA + N DGS +CGN RCV RFL ++ T +L A++ D V Sbjct: 67 --DARLVFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P+LDW IPLA D D H+ PV +P MGNPH FFV D Sbjct: 125 NMGAPVLDWAGIPLAE-----DVDTLHL-PVPG----DPVATGMGNPHMTFFVPD-AAAV 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL FG HP++ + N+ + +V S + + LR WERG G+T A GS +CA+VVA+ Sbjct: 174 DLERFGPAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAAR 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 T R V V + GG L I+W ++ V+MTG ++G Sbjct: 234 RGLTGRRVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDG 271 >gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] Length = 276 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + S + T +G ++ D ++V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I LF VSMGNPH + V DD D Sbjct: 122 VPEFEPNKIP----FKAKQTEKTYILRAEEKTLFCG---AVSMGNPHVVTVV-DDTQTAD 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S ++LR +ERG G T ACGS AC +V Sbjct: 174 VDTLGPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+V + GG L I W ++MTG A ++G+L Sbjct: 234 ELLDEKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQL 274 >gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] Length = 285 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 149/293 (50%), Gaps = 30/293 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +++ + + A ++ D HF D ++ I A D Sbjct: 3 FTKMHGCGNDYVYVNL--FEEKLDDPARVSIYVSDR-HFGIGSDGLITIGPSDKA--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + Sbjct: 58 MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169 VDMGEPIL IP+ ++ D + + P++ H+ VSMGNPHA+ Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DD+ ++L +G L H MF + N + S +R WERG T ACG+ Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA+V+A KT+ V V + GG L IE+ + NHVFMTG A + + G++DI Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] Length = 286 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 150/287 (52%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F K +G GN +VID RG + N ++ I + N F D ++ I + ++ + Sbjct: 4 ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115 I I N DGSE Q CGNG+RC+V +L + K + ET G+ +AK D Sbjct: 64 YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+V MG PIL+ + IP + + + + F + F + V MGNPH IFFV+D Sbjct: 122 ITVKMGVPILECQNIPTTIEKKINSIPSHEF----IEKDFNNMGYAVGMGNPHLIFFVKD 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L+ G +L K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA Sbjct: 178 -IESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIH 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ L N V + GG L I+W D+ V MTG AKK + G + Sbjct: 237 VAAYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283 >gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2 Length = 279 Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 147/295 (49%), Gaps = 39/295 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 ++F K G+GN ++ID R IT + A+ D HF D ++ ++ + Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPE--KAVEMCDR-HFGIGADGVIFALPGENGT- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ FL SR K ++ T+ G++ + DG Sbjct: 59 DYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQLTPDGQ 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNP 165 I VDMG P L IP +G + + P VSMGNP Sbjct: 118 IKVDMGLPRLLAGEIPTT------------LGAADGKVINQPLEVEGQTWEVTCVSMGNP 165 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H I FVED + L G HP F + N +V S + L +R WERG G+T AC Sbjct: 166 HCITFVED-VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLAC 224 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 G+ ACAS+VA+ +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 225 GTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279 >gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] Length = 279 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 139/279 (49%), Gaps = 17/279 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G GN + ++ C + + I +L+ +D +T LI DA + Sbjct: 3 FTKMHGAGNDYVYVN---CFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKADAQM 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGNG+RCV +++ +++ ET G+L GS + V Sbjct: 60 RMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVRV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+PIL IP D +G L + VSMGNPH I FV++ H+ Sbjct: 120 NMGKPILTSAEIPTLLPGDPPVNAPLEVG-AQTLEVT---CVSMGNPHCITFVDEVNDHW 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + HPMF VN V S L +R WERG G T ACG+ ACAS VA Sbjct: 176 -VHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ R V + + GG L +EW DN+ VFMTG A + ++G Sbjct: 235 TGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQG 273 >gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1] Length = 285 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 148/293 (50%), Gaps = 30/293 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +++ + + A ++ D HF D ++ I D Sbjct: 3 FTKMHGCGNDYVYVNL--FEEKLDDPARVSIYVSDR-HFGIGSDGLITIG--PSGKADFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + Sbjct: 58 MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169 VDMGEPIL IP+ ++ D + + P++ H+ VSMGNPHA+ Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DD+ ++L +G L H MF + N + S +R WERG T ACG+ Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA+V+A KT+ V V + GG L IE+ + NHVFMTG A + + G++DI Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 280 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 142/284 (50%), Gaps = 21/284 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID H + T L DQ++++ Q VD RI N Sbjct: 1 MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ GI+ K DG I+V MG P+L Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVL-- 118 Query: 128 KLIPLARSFDKMDRDRFHIG-----PVN----HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P A FD + D +G P++ +++ VVSMGNPHA+ VED Sbjct: 119 --APAAVPFDASNLDSRAMGEDTLWPLDVQGKQVWIS---VVSMGNPHAVQVVEDSEAAP 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LA G L+ HP F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 174 VLAE-GPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIR 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W V MTG A +EG+++I Sbjct: 233 RGLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 276 >gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] Length = 274 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP D + +P F ++ +I H L VVSMGNPH + V DD+ ++ Sbjct: 120 EPNFDPQTVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 173 ALLGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQE 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 233 LLSEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15] Length = 292 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGIATPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 62 YRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDMG 121 Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P RD H +N R ++ VSMGNPHA+ V DD Sbjct: 122 APVFEAARLPFVPDGLPTRVEGRDTQHALQING---RTAWLSTVSMGNPHAVQVV-DDAQ 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 178 AFPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG LD+ Sbjct: 238 IRRGLLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDL 283 >gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI] gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str. CI] Length = 288 Score = 148 bits (374), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102] gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102] Length = 283 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 7/278 (2%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V++ + D + + FDQ +++ +VD RI Sbjct: 6 FTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+MG+P Sbjct: 66 FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP + + + HI V L V+MGNPHA+ V D++ + +G Sbjct: 126 FMPSEIPFVPAHGETEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DNVETAPVDHWG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242 + + H F E VN+ ++ S+ LR +ERGVG T ACG+ ACA+VVA L K Sbjct: 184 SAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKA 243 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W + V MTG A+ +EG+L Sbjct: 244 GAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281 >gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65] gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65] Length = 278 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + LS FDQ++++ + VD Sbjct: 2 LLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ET GI+ +DG + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD 179 + P F+ +R+ + P+N F VSMGNPH + V DD++ Sbjct: 122 AA----RFSPSDLPFNAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVV-DDIHSEL 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L H F + VN ++ + +DLR +ERG G T ACG+ ACA+V + Sbjct: 177 VNQLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKW 236 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W V M G + ++G+L + Sbjct: 237 GLVDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278 >gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134] gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus] gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134] Length = 288 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] Length = 274 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 20/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN +VI+ D + A+ D ++++ A D +RI Sbjct: 3 FTKMHGLGNDFIVIEAVEGVD-YSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMRIF 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMG 121 N DGSE + CGNG RC +++ + + ++ T ET+ G+++ + EN + S+ V MG Sbjct: 60 NADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVYMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 PI + IP+ K ++ +F PV + + V +G PH I FV Sbjct: 120 SPIFESSKIPV-----KSEKQKFIDEPVKIDGKTYRLSS--VRVGVPHTILFV-SSFEES 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + K +F EG N+ +V E++ +RTWERGVGLT ACGS A AS V S Sbjct: 172 FMKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSL 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L +T R+V+V G LL+EW ++N ++++GE ++ + G+++I Sbjct: 232 LGRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274 >gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] Length = 278 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 42/293 (14%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D I+L+ D Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGA------------DGILLVLD 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110 + A D +RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + Sbjct: 51 SKLA--DIRMRIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLIL 108 Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNP 165 N G + V+MG+P K IP+ + D + I + + + S MG P Sbjct: 109 NDYGLVEKVRVNMGKPSFKRKDIPM-----QGDPESDAINTSIEVEGKEYKITSLLMGVP 163 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H + FV DD+ D+ + G + KH +F N++ +V ++ +RTWERG G T AC Sbjct: 164 HTVLFV-DDVEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFAC 222 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ +CASV+AS T + V+V + G L IEW D+ VFMTG A++ + G+ Sbjct: 223 GTGSCASVIASNLNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGE 275 >gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] Length = 303 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 148/290 (51%), Gaps = 24/290 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF----DQIMLIHDFQ 56 M+ F+K +G+GN L+ID R D +T IN + + HF D ++L + Sbjct: 4 MLQFSKYQGLGNDFLLIDGR--EDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRD 113 A D ++I N DGS + CGNG+RC+ RFL + + + ET+ GI+ D Sbjct: 62 -ADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQED 120 Query: 114 GSISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFF 170 G I VDMG P LD + IP + + + H+G + H+ V MGNPH I Sbjct: 121 GQICVDMGTPFLDPESIPTTLTIGSAGLPQGECHLGSTSLHVA-----AVGMGNPHLIVP 175 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED L + ++G L KH F N+ ++ S L++R WERG G T ACG+ AC Sbjct: 176 VED-LENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGAC 234 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 AS+VA+ L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 235 ASLVATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVL 284 >gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] Length = 283 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 136/286 (47%), Gaps = 24/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V+F K +G+GN ++ID R +T D A+ + D ++ + D Sbjct: 3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALP-PEGDTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ RFL + ++ T+ G + DG + V Sbjct: 62 MRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKV 121 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVE 172 DMG P L + IP L D + + PV VSMGNPH I FV Sbjct: 122 DMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWPVT--------CVSMGNPHCITFV- 172 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DDL D + G HP+F + +N +V + L + WERG G T ACG+ ACA Sbjct: 173 DDLEAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAV 232 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 +VA K+ ++++ GG L I W + VFMTG A+K + G Sbjct: 233 LVAGVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTG 278 >gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 150/291 (51%), Gaps = 28/291 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ C + N HF D +++I+ + A D Sbjct: 9 FTKMQGLGNDYVYVN---CFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFE 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + + ET+ GI L K+ + + Sbjct: 64 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVR 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFV 171 VDMGEP LD + IP+ + DR + H+ VSMGNPH + ++ Sbjct: 124 VDMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMT-----GVSMGNPHDVVYI 178 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D++ D+ G H F + +N ARV +++++R WERG G T ACG+ ACA Sbjct: 179 -DNVQGLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACA 237 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VAS T R V +++LGG L IEW+ ++NHV+MTG A ++G++++ Sbjct: 238 VAVASILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288 >gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 275 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 15/272 (5%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN + ID + D AI D ++LI S +R+ Sbjct: 3 FTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDKCSFR--MRM 60 Query: 67 INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSISVDM 120 N DGSE Q CGN +RCV +++ ++ + T ET+ G+ L ++ + V+M Sbjct: 61 FNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+PIL K IP+ +K+ + + VSMGNPH + FVE + D+ Sbjct: 121 GKPILLAKDIPVIWEKEKLIYETIDFSSEQWILT----AVSMGNPHVVIFVEK-VSRLDV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HPMF E +N+ + SL +R WERG G T ACG+ ACA++VAS Sbjct: 176 KRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVLNG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEA 271 K NR ++ +LGG L +EW + HVFMTG+A Sbjct: 236 KLNRKATISLLGGDLELEWDEKTEHVFMTGDA 267 >gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] Length = 274 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 135/277 (48%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D + +P F +R +I H L VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQAVP----FRATKEERTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V++ GG L I W N +FMTG A ++G Sbjct: 234 LSEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDG 270 >gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] Length = 295 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D N+T + AL+ + HF DQ++L+ A VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VD Sbjct: 60 FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVD 119 Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ D + +P A + + + P++ R VSMGNPHA+ V DD+ Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVV-DDVEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 + + V V GG L I W + + M G A +EG++++ Sbjct: 239 RRGRLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286 >gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169] gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1] gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1] gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1] gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7] gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8] gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72] gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1] gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E] Length = 299 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 23/304 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDMG Sbjct: 62 YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRD-RFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +P + IP ++ K+ R R + PV +V ++GNPHAI DD+ Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPVQL------YVANIGNPHAII-KVDDVLD 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 D+ G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV + Sbjct: 175 ADVDRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGI 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-----KLDIKTGKWIKK 289 G L + + ++ GG L I W D + MTG +EG L G + Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDP 293 Query: 290 NEDD 293 N DD Sbjct: 294 NADD 297 >gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264] gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264] Length = 288 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114] gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114] Length = 283 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/277 (35%), Positives = 138/277 (49%), Gaps = 7/277 (2%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V++ + D + + FDQ +++ +VD RI Sbjct: 6 FTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+MG+P Sbjct: 66 FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP + + HI V L V+MGNPHA+ V DD+ + +G Sbjct: 126 FMPSEIPFVPAHGENKDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DDVETAPVEHWG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242 + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA L K Sbjct: 184 GAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKE 243 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 244 GAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGEL 280 >gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] Length = 288 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 23/293 (7%) Query: 4 SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S F KM G+GN + ++M R I ++ ++ ++T D ++LI A Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVA 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112 V +R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ +++ Sbjct: 60 PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDK 117 Query: 113 DGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DMG P L + IP L R+ F NH + VSMGNPHA+ FV Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA Sbjct: 174 -DDVENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232 Query: 232 SVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +VVA+ K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285 >gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703] gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703] Length = 283 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 7/280 (2%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V++ + D + + FDQ +++ +VD Sbjct: 4 LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+MG+ Sbjct: 64 RIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVTVNMGK 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + + HI V L V+MGNPHA+ V D++ + Sbjct: 124 PRFMPSEIPFVPAHGENEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DNVETAPVEH 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLH 240 +G + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 182 WGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLL 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K V V + GG L I W + V MTG A+ +EG+L Sbjct: 242 KAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281 >gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42] gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42] Length = 315 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 145/300 (48%), Gaps = 36/300 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L+ + HF DQI+++ A +D Sbjct: 26 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLA---DRHFGVGADQILIVRPSPGAGID 82 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++VD Sbjct: 83 FEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVD 142 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PF--------------VVSMGN 164 MG P L+ +P D + PV+ + P VVSMGN Sbjct: 143 MGRPELEPARVPF---------DTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGN 193 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ V DD+ +A G L+ HP F + VN ++ + + LR +ERG G T A Sbjct: 194 PHAVQLV-DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLA 252 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 CG+ ACA+VVA L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 253 CGTGACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312 >gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708] gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708] Length = 279 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN ++ID R + + A+ D HF D ++ Q+ D Sbjct: 3 IEFTKYHGLGNDFILIDNRSSLTPVITPQ-QAVKWCDR-HFGIGADGVIFALPGQN-DTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSI 116 +RI N DGSE + CGNG+RC+ FLT SR K + T+ G++ + DG + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTK-DYYRIHTLAGVITPQLTHDGQV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L + IP +F D ++ + VSMGNPH I F+ED + Sbjct: 119 KVDMGLPRLLAQEIP--TTFAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIED-VA 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G HP F + +NL + + L +R WERG G+T ACG+ ACA +VA Sbjct: 176 AIPLEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAG 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R ++++ GG L IEW + + ++MTG A++ + GK Sbjct: 236 VLNDKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279 >gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1] Length = 299 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 23/304 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDMG Sbjct: 62 YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRD-RFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +P + IP ++ K+ R R + PV +V ++GNPHAI DD+ Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPVQL------YVANIGNPHAII-KVDDVLD 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 D+ G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV + Sbjct: 175 ADVDRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGI 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-----KLDIKTGKWIKK 289 G L + + ++ GG L I W D + MTG +EG L G + Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDP 293 Query: 290 NEDD 293 N DD Sbjct: 294 NADD 297 >gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] Length = 275 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 145/279 (51%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM+G+GN +VID ++ AI L+ + FDQ++L+ D +D Sbjct: 3 IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF L +++ T +G + K +DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP K + + + H + VVSMGNPH + V DD+ + + Sbjct: 123 PIFDPHKIPFVA---KKEEKTYILRVQEHTVICG--VVSMGNPHCVVLV-DDIDSAPVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F VN+S + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++++ GG L W V MTG A+ ++G++ I Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275 >gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 274 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F ++ +I H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFEPQSVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi] gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi] Length = 262 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 17/266 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 8 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQNGC--DQVIVITNSSLA--DCFMHI 61 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + + IL + D SI V+MG+P+L Sbjct: 62 YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ + D H+ P+ L++P V++GNPH +FFV D + L S G Sbjct: 122 KWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S + T + Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270 SV + GG LLIEW +N VFMTG+ Sbjct: 235 QTSVNLPGGKLLIEWANN--VFMTGD 258 >gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] Length = 278 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 42/293 (14%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D I+L+ D Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGA------------DGILLVLD 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110 + A D +RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + Sbjct: 51 SKLA--DIRMRIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLIL 108 Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNP 165 N G + V+MG+P K IP+ + D + I + + + S MG P Sbjct: 109 NDYGLVEKVRVNMGKPSFKRKDIPM-----QGDPESDAINTPIEVEGKEYKITSLLMGVP 163 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H + FV DD+ D+ + G + KH +F N++ +V ++ +RTWERG G T AC Sbjct: 164 HTVLFV-DDVEKVDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFAC 222 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ +CASV+A+ T R +V + G L IEW D++ VFMTG A++ + G+ Sbjct: 223 GTGSCASVIAANLNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGE 275 >gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815] gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815] Length = 286 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 145/285 (50%), Gaps = 16/285 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D N+T + AL+ N HF DQ++++ VD Sbjct: 5 FTKMHGAGNDFVVLDGYTQPLNLTETQVRALA---NRHFGVGADQLLVVEKPTVDGVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT-SRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ SR+ ++S + +G++ +G + VDMG Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P+ + +P S + R D + VN R VVSMGNPHA+ V DD+ + Sbjct: 122 APVFEPVQVPFDASGVEARREGNDTLYALEVNGE-TRWVSVVSMGNPHAVQVV-DDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ HP F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W+ + + M G A +EG++++ Sbjct: 240 RGLLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIEL 284 >gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894] gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894] Length = 274 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PVFEPSLVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V + GG L I W N +FMTG A ++G Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDG 270 >gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] Length = 263 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 17/266 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 9 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQNGC--DQVIVITNSSLA--DCFMHI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + + IL + D SI V+MG+P+L Sbjct: 63 YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ + D H+ P+ L++P V++GNPH +FFV D + L S G Sbjct: 123 KWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S + T + Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270 SV + GG LLIEW +N VFMTG+ Sbjct: 236 QTSVNLPGGKLLIEWANN--VFMTGD 259 >gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J] gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J] gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] Length = 292 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIA---DRHFGVGADQLLLVERSTRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMG 121 Query: 122 EPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P D H +N R ++ VSMGNPHA+ V DD Sbjct: 122 APVFEAARLPFLPEGLPTRTQGDDTQHALQING---RTEWLSTVSMGNPHAVQIV-DDTE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W D V MTG A +EG LD+ Sbjct: 238 IRRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDL 283 >gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98] Length = 288 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 146/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF--DQIMLIHDFQDASV 60 S F KM G+GN + ++M H A+ A + NT D ++LI + A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI-- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + I Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVT 119 Query: 117 --SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L +P L R+ F + F VSMGNPHA+ FV D Sbjct: 120 LVKIDMGAPRLTRAELPMLGEGETPFIREDFLFHNQRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACASV Sbjct: 175 DVEKAPLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYEYK 285 >gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 259 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/263 (38%), Positives = 149/263 (56%), Gaps = 17/263 (6%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 +M G GN ++ID R +I + N + DQI++I + ++ D F+ I N Sbjct: 8 RMYGTGNNFVIIDSR----SINNLNWNYREIANQNGCDQIIVITN--SSAADCFMHIYNA 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWK 128 DG EV+ CGN RCV + S + T E + + IL + SI V+MG+P+ W Sbjct: 62 DGGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWH 121 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL+ D + H+ P+ L++P V++GNPH +FFV D++ L S G L Sbjct: 122 EIPLSAKCDPL-----HL-PIELEMLKDPVAVNIGNPHMVFFV-DNISEIPLQSLGPKLE 174 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNRAVS 247 KH +F + VN++IA+V + LR WERG G+TA+CGSAACA+++AS + R S Sbjct: 175 KHTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTS 234 Query: 248 VKMLGGGLLIEWHDNNHVFMTGE 270 V + GG LLIEW DN +FMTG+ Sbjct: 235 VNLPGGKLLIEWPDN--IFMTGD 255 >gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246] Length = 280 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/298 (33%), Positives = 145/298 (48%), Gaps = 38/298 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G+GN + +D +D + HF D ++LI + A D Sbjct: 1 MQFTKMHGLGNDYVYVDC--VRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--D 56 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGS 115 A +R+ N DGSE + CGNG+RCV +F+ R + ET RG+L + + Sbjct: 57 ARMRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAER 116 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL---RNPF---VVSMGNPHAIF 169 + V+MGEPIL+ IP PVN + P+ VSMGNPHA+ Sbjct: 117 VRVNMGEPILESAKIPTTLPGAP---------PVNAKLVCAAPTPWEVTCVSMGNPHAVI 167 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + DD+ +L G L P F +N+ +V S + +RTWERG G+T ACG+ A Sbjct: 168 YC-DDVAKVELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGA 226 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 C+ VA H+T R + + GG L +EW + +N V+MTG A ++ TG+W Sbjct: 227 CSVCVAGVLTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPAT-------EVFTGEW 277 >gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] Length = 286 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 ++F K +G GN +VID RG + N S+ I + N F D ++ I + + + Sbjct: 4 INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115 I I N DGSE Q CGNG+RC+V +L + K + ET G+ +AK D Sbjct: 64 YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+V MG PIL+ + IP + + + + F + F + V MGNPH IFFV+D Sbjct: 122 ITVKMGVPILESQNIPTTIEKKINSIPSHEF----IEKNFNNMGYAVGMGNPHLIFFVKD 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA Sbjct: 178 -IESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIH 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ L N V + GG L I+W D+ V MTG AKK + G + Sbjct: 237 VAAYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283 >gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] Length = 288 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 153/293 (52%), Gaps = 23/293 (7%) Query: 4 SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S F KM G+GN + ++M R I ++ ++ ++T D ++LI A Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVA 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112 V +R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ +++ Sbjct: 60 PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDK 117 Query: 113 DGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DMG P L + IP L R+ F NH + VSMGNPHA+ FV Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232 Query: 232 SVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +VVA+ K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285 >gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 279 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDAFI 64 + F K G+GN +++I R + + S + D + +I + D + Sbjct: 3 IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPGIGNTDYTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI+N DGSE Q CGNG+RC+ R + K+++ T G++ + +G + VDM Sbjct: 63 RILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + L+L VSMGNPH I FVED DL Sbjct: 123 GTPYLFAHEIPTTLGNPNETVINKPLAVAGKLWLVT--CVSMGNPHCITFVEDA-SAIDL 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G H MF E +N V + L +R WERG G T ACG+ ACASVVA Sbjct: 180 AVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLTE 239 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 R +V++ GG L+IEW + +N ++MTG+A+ + G Sbjct: 240 NCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGS 278 >gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703] Length = 274 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F ++ +I H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFEPQSVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270 >gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 288 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] Length = 276 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 152/287 (52%), Gaps = 26/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN ++ID SD I +LS FDQ++++ D ++D RI Sbjct: 3 FSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHCRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRF-----LTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 N DGSEV CGNG+RCV RF LT++ +K + T+ + +L ++ ISV+ Sbjct: 63 YNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSE-----FISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178 MGEPI D IP F + + + N L VVS+GNPH + VE DL Sbjct: 118 MGEPIFDPIKIPF---FSTQYQKMYVLFVPNFTILCG--VVSIGNPHCVILVEQVDL--V 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VA 235 + G++L H F + N+S ++ S ++ LR +ERG G T ACGSAACA+V + Sbjct: 171 PVTVLGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQ 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 G L K N +V V + GG L I W + ++M G A ++G +++ Sbjct: 231 QGLLKK-NISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276 >gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] Length = 276 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F+KM+G+GN +V+D + I L+ + FDQ++++ Q D Sbjct: 2 IMPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSE CGNG R V +++ + ++ T + A +G +++DMG Sbjct: 62 FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L+ IPL R +K G +++ VSMGNPH + V D++ + Sbjct: 122 KPRLEPAQIPL-RFAEKQTLYSIDAGGISYKV----GAVSMGNPHCVLKV-DNVEKAPVQ 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L++H F N ++ +++ LR +ERGVG T ACG+ ACA+VV + Sbjct: 176 TVGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T+ V V + GG L I W + + VFM+G AK +EG+++I Sbjct: 236 TDDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276 >gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] Length = 281 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 143/292 (48%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G GN + +D+ + + + +D +T D ++LI A DA +R Sbjct: 3 FTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DARMR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVD 119 + N DGSE + CGNG+RCV +++ +++ T ET G+L + + R + V+ Sbjct: 61 MFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVRVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+PIL+ IP + D +G VSMGNPH I FV D L Sbjct: 121 MGQPILESAKIPTTLAGDPPVEADLQVGDQTLKVT----CVSMGNPHCITFV-DKLSDEW 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + KH +F VN V S L++R WERG G T ACG+ ACA VA Sbjct: 176 VHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGVLS 235 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 + R V++ +LGG L +EW + VFMTG A +++ +G+W N Sbjct: 236 GRCERKVTIHLLGGDLELEWSEETGEVFMTGPA-------VEVYSGEWTGGN 280 >gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] Length = 266 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 28/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ++ +R DN ++ D ++LI A D + Sbjct: 3 IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 RI N DGSE + CGN RC+ ++L + ET+ GI + +N S++ Sbjct: 61 RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P D + L + VSMGNPH + FV D++ Sbjct: 121 VDMGIPT-DIHEVALGEGY----------------IASKGIAVSMGNPHLVIFV-DEINK 162 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP+F + VN+ +V + + +R WERG G+T ACG+ ACA+ VAS Sbjct: 163 IKLEEVGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASA 222 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + R S+ M GG L IEW +NH++MTG A K ++GK++I Sbjct: 223 FTDRCGRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266 >gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629] Length = 285 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 30/293 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +++ + + A ++ D HF D ++ I A D Sbjct: 3 FTKMHGCGNDYVYVNL--FEEKLGDPARVSIYVSDR-HFGIGSDGLITIGPSDKA--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + Sbjct: 58 MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169 VDMGEPIL IP+ ++ D + + P++ H+ VSMGNPHA+ Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DD+ ++L +G L H MF + N + S +R WERG T ACG+ Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA+V+A KT+ V V + GG L IE+ NHVFMTG A + + G++DI Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284 >gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16] gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16] Length = 288 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 147/291 (50%), Gaps = 25/291 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F KM G GN +V+D G H I T AL++ HF DQI+++ Sbjct: 3 LQFTKMHGAGNDFVVLD--GIHQQIDLTPAQWRALAS---RHFGVGADQILIVEKPSRPD 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++ Sbjct: 58 VDFRYRIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF--VVSMGNPHAIFFV 171 VDMG P L+ +P R+ R D + VN R + VVSMGNPHA+ V Sbjct: 118 VDMGAPELEPARVPF-RAEGLPTRAEGADTLYGLEVNG---RTEWISVVSMGNPHAVQVV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ ++ + G ++ H F VN +V ++ LR +ERG G T ACG+ ACA Sbjct: 174 -DDVENFPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 +VVA + V V GG L I W V MTG A +EG +D+ Sbjct: 233 AVVAGIRRGLLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDL 283 >gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 279 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 139/288 (48%), Gaps = 24/288 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170 V+MG PI + +P A F+K + LR VVSMGNPH + Sbjct: 121 VNMGGPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + + G LL H F E N+ +V + + LR +ERG G T ACGS AC Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V + V V + GG L IEW H ++MTG+A ++G Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275 >gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424] gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424] Length = 281 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN ++ID R + + S + D HF D ++ + + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDR--HFGIGADGVIFVLP-GTSQTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ +F+ K KS+ +T+ G++ + ++ Sbjct: 60 YQMRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVT 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L IP L +K+ + + L VSMGNPH I FVED + Sbjct: 120 VDMGLPRLLGSEIPTTLVSRTEKVIDQPIEVAGQSWLVT----CVSMGNPHCITFVED-V 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G H F + N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 175 KSIALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 K++R +V++ GG L I W + + HV+MTG AK+ + G ++ Sbjct: 235 GVLTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYEM 281 >gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] Length = 276 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 28/290 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 ++ F KM+G+GN +V+D+ N+ ++ + L+ + HF DQ++++ V Sbjct: 2 LLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLA---DRHFGIGCDQLLVVETPMQPDV 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DG+EV+ CGNG RC +F+ + + ET GI+ D I V Sbjct: 59 DFRYRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRV 118 Query: 119 DMGEPILDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +MG+P+L+ IP S +D + I VS+GNPHAI VE Sbjct: 119 NMGKPLLEPADIPFTASKRANTYTLLVDDEEVSIS-----------AVSVGNPHAIITVE 167 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + ++ G + H F + VN+ +V S + ++LR +ERG G T ACGS ACA+ Sbjct: 168 D-IDTAPVSILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAA 226 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +V+ ++ ++ + GG L +EWH H V MTG A +EG++ + Sbjct: 227 MVSGQLQGLLDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276 >gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320] gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320] Length = 274 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 148/284 (52%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC RF LT++ + K T ++ R L +N D + V+ Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVST-QSGRMTLHVMDNED--VCVN 117 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEP + + +P A+ +K + I + L VVSMGNPH + VED + Sbjct: 118 MGEPEFEPQKVPFRAQKVEKT----YIIRAMERTVLCG--VVSMGNPHCVIQVED-IKTA 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ S G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 171 EVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGIS 230 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW N ++MTG A ++G + + Sbjct: 231 QGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] Length = 274 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ +I + H L VVSMGNPH + V DD+ + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQV-DDVETAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E N+ ++ +++ LR +ERG G T ACGS ACA+ VA G L Sbjct: 174 TLGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAA-VAVGILQG 232 Query: 242 TNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + A V V + GG L I+W H +FMTG A ++G Sbjct: 233 SLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270 >gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 286 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 17/284 (5%) Query: 2 QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F+KM G+GN ++I+ M +TS+ I LS FDQ++L+ + ++ + Sbjct: 8 KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N +G+EV CGNG RC F L K+++ T L+ +G++ Sbjct: 68 IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P K I + ++ I VN + N +VS+GNPH I +V ++L Sbjct: 128 VDMGVPCFKLKNI---FGENIIENSLHSIKFVNKII--NYDLVSIGNPHCIIYV-NNLKK 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 Y + G L+ H +F EG+N++ V S + LR +ERGVG T ACGS ACASV + Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 G L V V +L G L I W + ++MTG A ++G Sbjct: 242 QQGLLF---NEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDG 282 >gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap Length = 317 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 17/289 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 ++ ++ F K G+GN +++D R + + A D N +I + Sbjct: 23 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 82 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + + SFT T G++V + DG + Sbjct: 83 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 142 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE----- 172 VDMG PIL + +P S +K + V N VSMGNPH I F + Sbjct: 143 VDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPN 201 Query: 173 ---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 DDL +L G H MF N V S L +R WERG G T ACG+ A Sbjct: 202 LKVDDL---NLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGA 258 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 CA VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 259 CALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 307 >gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] Length = 323 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 145/289 (50%), Gaps = 22/289 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF----DQIMLIHDFQ 56 M+ F+K +G+GN ++ID R ++ IN + + HF D ++L + Sbjct: 1 MLQFSKYQGLGNDFVLIDGR--EGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR 58 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRD 113 A D ++I N DGS + CGNG+RC+ RFL + + + ET+ GI+ D Sbjct: 59 -ADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQED 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 G I VDMG P LD + IP + + + H+G + N V MGNPH I V Sbjct: 118 GQICVDMGSPFLDPESIPTTLTIGSAGLPQGECHLGGTS----LNVAAVGMGNPHVIVPV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 ED L +G +L KH F N+ ++ S L++R WERG G T ACG+ ACA Sbjct: 174 ED-LESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 S+VA+ L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 233 SLVAACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVL 281 >gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] Length = 274 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 148/284 (52%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC RF LT++ + K T ++ R L +N D + V+ Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVST-QSGRMTLHVMDNED--VCVN 117 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEP + + +P A+ +K + I + L VVSMGNPH + VED + Sbjct: 118 MGEPEFEPQKVPFRAQKVEKT----YIIRAMERTVLCG--VVSMGNPHCVIQVED-IKTA 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ S G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 171 EVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGIS 230 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW N ++MTG A ++G + + Sbjct: 231 QGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] Length = 286 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 25/291 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +G+GN L+ID R + + + D HF D ++ + S D Sbjct: 3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCD--RHFGVGADGVIFLLRGTGES-D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGSI 116 +R+ N DGS Q CGNG+RC+ +F+ + R + + +T+ G++V + DG + Sbjct: 60 YRMRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQV 119 Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +VDMG+P L + IP LA + K+ +G L VSMGNPH + FVED Sbjct: 120 TVDMGKPRLLAQQIPTTLAAADQKVVDVPLTVGDRQWLVT----CVSMGNPHCVTFVED- 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DLA G HP F + N +V + L +R WERG G+T ACG+ ACA++V Sbjct: 175 VAALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLV 234 Query: 235 A---SGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 A +GCL +V++ GG L I W + H++MTG A + G L Sbjct: 235 AAVLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285 >gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2] gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2] Length = 277 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 15/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN + +D + I+ +D + L+ D +R+ Sbjct: 3 FTKMHGLGNDYIYVDAISQKIE-NPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMF 61 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121 N DGSE + CGN +RCV +F+ + + + T ET+ GI V + + + VDMG Sbjct: 62 NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMG 121 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EPIL + IP L+ +D + I ++ + N VSMGNPHAI ++E+ + + L Sbjct: 122 EPILKAEEIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VDEFPL 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 176 EKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ + H++MTG A +EG++DI Sbjct: 236 YVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277 >gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] Length = 293 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 140/289 (48%), Gaps = 20/289 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDAS-VD 61 F KM GIGN + I D D +AL+ + HF D ++L+ + S D Sbjct: 5 FVKMHGIGNDYIYIS---GFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEAD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS---------RMKRKSFTFETIRGILVAKENR 112 A +R+ N DGSE CGNG+RCV +FL R+K K ++ + +R Sbjct: 62 AVMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDR 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V+MG PIL IP D + VSMGNPH + FVE Sbjct: 122 VRRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE 181 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + DL G LL +H F + VN+ +A+V + + +RTWERG G+T ACG+ ACA Sbjct: 182 D-VASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAV 240 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 +VA +T RA + + GG L +EW D V MTG A +EG D Sbjct: 241 LVAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289 >gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803] gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803] Length = 368 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 148/289 (51%), Gaps = 20/289 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHF----DQIMLIHDF 55 M+ F+K +G+GN ++++ R D S++I + +D + F D ++L Sbjct: 1 MLQFSKYQGLGNDFILVEGR---DGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPP 57 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENR 112 Q + +RI N DGSE + CGNG+RC+ RFL +S++ ET G+++ + + Sbjct: 58 QGQG-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQ 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 DG I VDMG P L +++P S D R + + V MGNPH + V Sbjct: 117 DGQIRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVS--REGLTLSLAAVGMGNPHVVVPV- 173 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DDL + G L P+F N+ +V + L++R WERG G T ACG+ ACA+ Sbjct: 174 DDLEAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACAT 233 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 +VA+ + ++ +V + GG L I W D VFMTG A ++G ++ Sbjct: 234 LVAAVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMN 282 >gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] Length = 279 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 144/285 (50%), Gaps = 22/285 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F KMEGIGN + D G + ++ +D + N H D +++I + Sbjct: 1 MLKFLKMEGIGNDYVYFD--GINQDVPTDE-TFIKKVSNRHIGIGSDGVIII--LPSETC 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG--- 114 D +R+ N DGSE + CGNG+RC +F+ + + + ET+ GI + N DG Sbjct: 56 DFRMRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVT 115 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ VDMGEPI IP+ S +M I + VSMGNPH I +V D Sbjct: 116 SVCVDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTYYCT----AVSMGNPHVIQYV--D 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 +D+ + G +F E VN +V E L +R WERG G T ACG+ ACA + Sbjct: 170 TLDFDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMY 229 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AS +K + V V++LGG L IE D +FMTG A+ +EG L Sbjct: 230 ASYLNNKCDEKVDVELLGGHLQIELRDKK-IFMTGPARTTFEGTL 273 >gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] Length = 278 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 136/287 (47%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFI 64 F KM+G+GN +V D G + DA A D DQI+L+ + D Sbjct: 5 FTKMQGLGNDFVVFD--GVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + T G + DG + VDMG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDMGA 122 Query: 123 PILDWKLIPLARSFDKMD-------RDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 P IP + + D DR IG +SMGNPHA+ V DD Sbjct: 123 PAFTPARIPFSVETETADATYPLEIEDRTLTIG-----------ALSMGNPHAVLIV-DD 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A+ G L+ HP F VN ++ ++ LR ERG G T ACG+ ACA+VV Sbjct: 171 VESAPVATLGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVV 230 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + + + V V + GG L+IEW H V+MTG A +EG+++ Sbjct: 231 SGRRRGRLDERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277 >gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 309 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 80 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVV 139 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P A D R + P++ R VSMGNPHA+ V DD+ Sbjct: 140 DMGAPVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana] gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana] gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana] gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana] gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana] Length = 362 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 142/292 (48%), Gaps = 23/292 (7%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 ++ ++ F K G+GN +++D R + + A D N +I + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 133 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + + SFT T G++V + DG + Sbjct: 134 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 193 Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 VDMG PIL + +P S +K + + V+ N VSMGNPH I F + Sbjct: 194 VDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW----NVTCVSMGNPHCITFGKKG 249 Query: 173 ------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 DDL +L G H MF N V S L +R WERG G T ACG Sbjct: 250 GPNLKVDDL---NLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACG 306 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 + ACA VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 307 TGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 358 >gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] Length = 279 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 150/283 (53%), Gaps = 19/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K G GN ++++ G + I A A+ D HF D ++++ Q A D Sbjct: 1 MQFTKWHGQGNDFVIVN--GFQEKIEDYAQAAVKICDR-HFGIGADGLVIVGPSQVA--D 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 +RI N DGSE + CGN RCV R++ + T ET+ G L+ + + Sbjct: 56 FRMRIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRT 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEP L IP+ + D + ++ + + + VSMGNPH I FV DD+ Sbjct: 116 VRVDMGEPRLKRAQIPM---IGEPDSEAINVPLIVNDKTYDITCVSMGNPHCIIFV-DDV 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +LA+ G L+ HP F N+ +V + + +R WERG G+T ACG+ A A++VA Sbjct: 172 DEINLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVA 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + KT R ++ + GG L++EW ++NHV+M+G A + + G+ Sbjct: 232 AVLNGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGE 274 >gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] Length = 276 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 22/283 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V+F KM+G GN +VID +T+ I ++ FDQ+++I ++ SVD Sbjct: 3 VNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHF 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ RF+ + R+ T+ +L K DG +SV MG Sbjct: 63 RIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKMGV 122 Query: 123 PILDWKLIP-----LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P + IP +A +D +D +G VV++GNPHAI VE + Sbjct: 123 PRFEPTEIPFIASGVANFYDIAVDNQIVKLG-----------VVNIGNPHAIIPVER-IN 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G L+ H F EG N+ +V +++ LR +ERG G T ACGS ACA+V Sbjct: 171 AEEVGKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVG 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 V V GG L I+W V MTG A + G+ Sbjct: 231 RRCGLLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGE 273 >gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] Length = 271 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 120/230 (52%), Gaps = 14/230 (6%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------KSFTFETIRGILVAKENRD 113 D +RI N DGSE + CGNG+RC+ +F+ + KS+ T+ GI+ + D Sbjct: 42 DYSMRIYNSDGSEPEMCGNGIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPD 101 Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 G ++VDMGEPIL + IP L + K+ + + N VSMGNPH I FV Sbjct: 102 GQVTVDMGEPILTAREIPTTLGQPDGKVIDETLTVAGENWQVT----CVSMGNPHCITFV 157 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ LA G H F +N V + L ++ WERG G T ACG+ CA Sbjct: 158 -DDVEAVPLADIGPRFEHHEAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCA 216 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VVA+ K +R +V++ GG L IEW +NN V+MTG A + G + + Sbjct: 217 LVVAAVLNGKCDRQTTVELPGGNLEIEWANNNRVYMTGPATLVFSGDVAV 266 >gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] Length = 287 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D N+T + AL+ + HF DQ++L+ A VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VD Sbjct: 60 FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119 Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ D + +P A + + + P++ R VVSMGNPHA+ V D+ Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVV-GDVEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 239 RRGLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286 >gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] Length = 279 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 147/286 (51%), Gaps = 21/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN ++ID R C A+ D HF D ++ Q + D Sbjct: 3 IEFTKYHGLGNDFILIDNR-CDLTPLITPEMAIRMCDR-HFGIGADGVIFALPGQKGT-D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSI 116 +RI N DGSE + CGNG+RC+ FLT SR K + T+ G++ + DG + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSK-DYYLIHTLAGVIRPQLTDDGQV 118 Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VDMG P L + IP LA K+ IG N + + VSMGNPH I FVED Sbjct: 119 RVDMGSPRLLAQEIPTTLAPGNSKIINLPLEIG--NQTW--HITCVSMGNPHCITFVED- 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L G HP+F + N +V + L +R WERG G+T ACG+ ACAS+V Sbjct: 174 VASIPLEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 A + +R +++ GG L IEW + + ++MTG A++ + GK+ Sbjct: 234 AGVLNNLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279 >gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] Length = 284 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 21/292 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN ++ID +G + + A++ D +MLI A D +R Sbjct: 1 MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLI--LPSAKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVN----HLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+ + IP+A D + I P+N L L +VSMGNPHAI F + Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLS---LVSMGNPHAIHFCTKSVE 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + L G L+ H F + N +A + E + +R WERGVG T CGS A A VA+ Sbjct: 176 EFPLGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAA 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 L + V +K+ GG L +EW +N V++TG+A+ I TG+W+K Sbjct: 236 QILGYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEI-------IYTGEWLK 280 >gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] Length = 292 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 36/300 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L+ + HF DQI+ + A +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLA---DRHFGVGADQILTVRPSPGAGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++VD Sbjct: 60 FEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PF--------------VVSMGN 164 MG P L+ +P D + PV+ + P VVSMGN Sbjct: 120 MGRPELEPARVPF---------DTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGN 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ V DD+ +A G L+ HP F + VN ++ + + LR +ERG G T A Sbjct: 171 PHAVQLV-DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLA 229 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 CG+ ACA+VVA L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 230 CGTGACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289 >gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273] gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273] Length = 288 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 23/293 (7%) Query: 4 SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S F KM G+GN + ++M R + ++ ++ ++T D ++LI A Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNINTGIGA--DGMILICPSDVA 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112 V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +++ Sbjct: 60 PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDK 117 Query: 113 DGSISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DMG P L + IP+ D R+ F NH + VSMGNPHA+ FV Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGDTPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +VVA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 142/293 (48%), Gaps = 25/293 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 ++ ++ F K G+GN +++D R + + A D N +I + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 133 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + + SFT T G++V + DG + Sbjct: 134 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 193 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR----NPFVVSMGNPHAIFFVE- 172 VDMG PIL + +P K+ ++ L + N VSMGNPH I F + Sbjct: 194 VDMGTPILKAQDVPT-----KLPGNKGEAVVQAELVVDGESWNVTCVSMGNPHCITFGKK 248 Query: 173 -------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 DDL +L G +H MF N V S L +R WERG G T AC Sbjct: 249 GGPNLKVDDL---NLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLAC 305 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 G+ ACA VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 306 GTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 358 >gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] Length = 288 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 21/292 (7%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ G L + ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKLEH-GKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 276 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ + ++ LF SMGNPH + V D++ D+ + Sbjct: 123 PIFEPNKIPMKAK--QAEKTYILRAGDQTLFCG---AASMGNPHCVTVV-DNVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + +FMTG A ++G+ ++ Sbjct: 237 DENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276 >gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] Length = 277 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 21/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ C D + HF D ++LI + D Sbjct: 3 FTKMHGIGNDYVYVN---CFKETVEDPEKTAILVSDRHFGIGSDGLILIK--PSSVADGK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS+ CGNG+RCV +++ + S + ET GI L + + ++ Sbjct: 58 MEMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P+L IP + + + VN R VSMGNPHA+ +VED + H Sbjct: 118 VNMGSPVLQAAAIPAVSEKETVIDEPV---TVNGREWRLT-CVSMGNPHAVTYVED-VKH 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G HPMF + VN A V ++++R WERG G T ACG+ ACA+ VAS Sbjct: 173 LDIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T V+VK+LGG L I W N+V+MTG A ++G++ Sbjct: 233 LNGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEI 275 >gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] Length = 288 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGN HA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNSHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] Length = 279 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K +G GN +++D D D + HF D +M++ + A D Sbjct: 1 MEFTKWQGCGNDFVIVDFL---DREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--D 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDGS 115 +R N DG+E + CGNG+RC R L R++R+ FT ETI G +V + + Sbjct: 56 IRMREFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTA 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEP+L IP+ R F I + + VSMGNPH + FV DD Sbjct: 116 VEVDMGEPVLAGDAIPV-RGFGMEPVIAQPITVEDRTYAMT--CVSMGNPHCVIFV-DDA 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + LA G HP F +N V + +R WERG G+T ACG+ CA++ A Sbjct: 172 EGFPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAA 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +RA +++ GG + + WH + H+FMTG A+ + G Sbjct: 232 GVLCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAG 273 >gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] Length = 278 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 38/291 (13%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D I+L+ D Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGA------------DGILLVLD 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107 + A D +RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ V Sbjct: 51 SKLA--DIRMRIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFV 108 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + + V+MG+P + IP+ + K D I + + + MG PH Sbjct: 109 NEYGLVDKVKVNMGKPSFKREDIPM-QGDPKSDAINTSIVVDGNEYRITSLL--MGVPHT 165 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I FV DDL D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ Sbjct: 166 ILFV-DDLEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +CASV+A+ R SV + G L IEW D+ VFMTG A++ + G+ Sbjct: 225 GSCASVIAANLNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGE 275 >gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301] gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301] Length = 276 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 141/283 (49%), Gaps = 22/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G GN +VI+ +T++ I L+ FDQ++L+ + A D RI Sbjct: 7 FTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV CGNG RC VRF+ + + + ET GI+ K +G ++V+MG P Sbjct: 65 FNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGAPR 124 Query: 125 LDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 L +P A S+ D+ + + VSMGNPHA+ V DD+ Sbjct: 125 LSPSEVPFIADAAANSYVLEVADQ-------QITIS---AVSMGNPHAVQIV-DDVEIAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G+ + HP F E VN ++ + LR +ERG G T ACG+ ACA+VVA L Sbjct: 174 VVALGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQL 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W N+ V MTG A + G ++I Sbjct: 234 GRLQSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276 >gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34] gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34] Length = 276 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 138/278 (49%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGG 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ + ++ LF SMGNPH + V D++ D+ + Sbjct: 123 PIFEPSKIPMKAK--QAEKTYILRAGEQTLFCG---AASMGNPHCVTVV-DNVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + +FMTG A ++G+ Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 141/296 (47%), Gaps = 42/296 (14%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHF--DQIMLIHDF 55 + + KM G+GN L +D G + + D A+ +D N D ++L+ Sbjct: 4 ERRPIRLTKMHGLGNNYLFLD--GLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPP 61 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 +D +RI N DGSE + CGNG+RC+ R + R + F ET G + + + D Sbjct: 62 RDPGARFRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLD 121 Query: 114 G----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV--------- 160 G ++VDMG P L+ +IP+A GP + P V Sbjct: 122 GHRVTGVTVDMGVPRLERGMIPMA-------------GPAGEQAVEVPLEVEAGGERSVF 168 Query: 161 -----SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 SMGNPH + FV DDL DL G HP F + VN RV + E + +R W Sbjct: 169 TVTALSMGNPHCVVFV-DDLEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVW 227 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 ERG G T ACG+ ACA VA +T R V+V++ GG L +EW + HV+MTG A Sbjct: 228 ERGSGPTLACGTGACAVAVAGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPA 283 >gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 297 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 142/297 (47%), Gaps = 23/297 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM+G GN +V+D +T L+ + HF DQI+ + + Sbjct: 2 QIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLA---DRHFGVGADQILTVRPSPADGI 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG EV+ CGNG RC R++ + R + +T+ G++ + DG ++V Sbjct: 59 DFEYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTV 118 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF----------LRNPFVVSMGNPHA 167 DMG P D +P A + R P++ + + VVSMGNPHA Sbjct: 119 DMGRPRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHA 178 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + VED + +A G L+ +H F + VN ++ + LR +ERG G T ACG+ Sbjct: 179 VQLVED-VDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGT 237 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282 ACA+V A L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 238 GACAAVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294 >gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] Length = 269 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 21/277 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V+D R + ALS N H DQ+++I + ++ + D Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P Sbjct: 61 MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W IPLA + D + PV L+ P V+MGNPH +F V+D Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 GN++ +F E +N++I VT + L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 168 GNMIEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVS 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN] gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN] Length = 299 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 143/286 (50%), Gaps = 15/286 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D N+T + AL+ + HF DQ++L+ A VD Sbjct: 5 FTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + ++S + +G + +G + VDMG Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMG 121 Query: 122 EPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ D + +P A + + P++ + R VVSMGNPHA+ V DD+ + Sbjct: 122 TPVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAFP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 181 VLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRR 240 Query: 240 HKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 241 GLLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286 >gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49] Length = 289 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 19/290 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ R R+S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175 DMG P+ +P A + R + P++ + R ++ VSMGNPHA+ V DD Sbjct: 120 DMGAPVFAPAQVPFDAAGLEGRAEGRDTLWPLD-VGGRTRWITTVSMGNPHAVQVV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287 >gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804] gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii] Length = 304 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 19/289 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F KM G GN +V+D +IT + AL+ + HF DQI+L+ D Sbjct: 10 NFTKMHGAGNDFVVLDGVRQAIDITPERARALA---DRHFGIGADQILLVEPPTHPEADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDM Sbjct: 67 RYRIFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDM 126 Query: 121 GEPILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G D +P A+ D + + P V++ NPHA+ V Sbjct: 127 GVTRFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQV- 185 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ +A+ G L+ +HP F+ VN +V S+ LR +ERG G T ACG+ ACA+ Sbjct: 186 DDVDAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAA 245 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V A + V V GG L ++W + H+ MTG A + G++DI Sbjct: 246 VAAGIRRGLLDSPVRVHTRGGTLTVDW-NGEHLRMTGPATSVFTGQVDI 293 >gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] Length = 289 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T+ + AL++ HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175 DMG P+ + +P A D R + P+ + R ++ VSMGNPHA+ V DD Sbjct: 120 DMGAPVFAPEQVPFDASGLDGRSEGRDTLWPL-EVGGRTRWISTVSMGNPHAVQVV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLP 288 >gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu] Length = 289 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 143/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALA---NRHFGVGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + ++S E ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVV 119 Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + +P + R + P++ R VSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + + G L+ +H F++ VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 RYPVLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 239 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDL 287 >gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium] Length = 276 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 142/287 (49%), Gaps = 22/287 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V F KM+GIGN +V+D + I+ L+ + FDQ+++I Q D Sbjct: 2 IVPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSE CGNG R V +++ + ++ T + +G I+++MG Sbjct: 62 FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINMG 121 Query: 122 EPILDWKLIPL--ARSFDKMDRD----RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +P L+ + IPL A+ + D R+ IG VSMGNPH + VED + Sbjct: 122 KPRLEPEKIPLRFAQQSETYMIDAEGIRYKIG-----------AVSMGNPHCVLQVED-I 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G +L+ H F N+ +V + LR +ERGVG T ACG+ ACA+VVA Sbjct: 170 DKAAVGKVGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVA 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V+MTG AK +EG++D+ Sbjct: 230 GRLQKILDEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276 >gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] Length = 289 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T+ + AL++ HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175 DMG P+ + +P A D R + P+ + R ++ VSMGNPHA+ V DD Sbjct: 120 DMGAPVFAPEQVPFDASGLDGRTEGRDTLWPL-EIGGRTRWISTVSMGNPHAVQVV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAYPVLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLP 288 >gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 286 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 149/289 (51%), Gaps = 22/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 F K G GN ++ID R + SD + + F D ++ I + D + Sbjct: 6 FEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILE-PDRNNY 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSIS 117 A + I N DGSE Q CGNG+RC+V++L + K + ET GI +A+ N +G I+ Sbjct: 65 AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGEIT 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVEDD 174 V MG+PIL+ K IP K+D I F + + V MGNPH IFF++D Sbjct: 124 VKMGKPILETKSIP-----TKIDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQD- 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L+ G + KH +F E N+ +++ + +++++R WERG G T ACG+ ACA V Sbjct: 178 ITKISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHV 237 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 A+ L N + + GG L+I W + + MTG AKK + G +K Sbjct: 238 AAYKLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286 >gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 304 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 158/303 (52%), Gaps = 40/303 (13%) Query: 1 MQSSMV---DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH 53 +Q MV F KM+G GN + ++ C + +D + F D ++LI Sbjct: 20 LQKGMVANMKFTKMQGCGNDYVYVN---CFEETINDPNGVAKKVSDRRFGIGSDGLILIK 76 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LV 107 + A D + + N DGS+ + CGNG+RCV +++ ++ S ET+ G+ L+ Sbjct: 77 PSEIA--DFTMHMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALI 134 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKM--------DRDRFHIGPVNHLFLRNPFV 159 + ++VDMGEP LD KLIP+A +++ DR+ + G Sbjct: 135 VDGGKVTEVTVDMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG------------ 182 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VS+GNPHA+ F+ED + + ++G L +HP+F E +N ++ +++++R WERG Sbjct: 183 VSVGNPHAVTFIEDT-NSFPIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGS 241 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T ACG+ A SV A+ T V+V MLGG ++I + + N +FMTG A ++G+ Sbjct: 242 AETHACGTGATCSVYAAILNGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGE 301 Query: 279 LDI 281 +++ Sbjct: 302 IEL 304 >gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 309 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 142/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R R+S + ++G++ +G + V Sbjct: 80 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVV 139 Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P S D + P++ R VSMGNPHA+ V DD+ Sbjct: 140 DMGAPVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 259 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] Length = 288 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ V D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] Length = 276 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 14/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I V R F VVSMGNPH + V DDL + Sbjct: 123 PEFEPSKIP----FRAKQTEKTYIMRVGE---RTIFCGVVSMGNPHCVTVV-DDLDLTGV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 175 ETLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG ++G++ Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] Length = 290 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 145/289 (50%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ C + + + HF D ++LI A D Sbjct: 11 FTKMHGIGNDYVYVN---CFEESIKNPAEVSKFVSDRHFGIGSDGLILIS--PSAKADFR 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + I N DGS+ + CGNG+RCV +++ + + ET+ GI L + + ++ Sbjct: 66 MNIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVATVE 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG PIL+ K IP+A + + + G H+ VSMGNPHAI F+ D++ Sbjct: 126 VNMGAPILEPKKIPVAVENNPVVDVPVEVKGKTYHMTC-----VSMGNPHAIIFM-DNVK 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ + G HP+F + N V ++++R WERG T ACG+ ACA+ VA Sbjct: 180 ELDIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTVAC 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTG 284 +KT V+V +LGG L I W N V+MTG A ++G++ + G Sbjct: 240 ILNNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288 >gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110] gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110] Length = 294 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 144/293 (49%), Gaps = 20/293 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS-- 59 + F KM+G GN +V+D +T+ L+ + HF DQI+ + + Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLA---DRHFGVGADQILTVRPPSKGAAE 59 Query: 60 -VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 VD I N DG EV+ CGNG RC +RF+ + + ET+ GI+ + DG + Sbjct: 60 GVDFQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRV 119 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG PI + +P D +H +G + + V+SMGNPHA+ Sbjct: 120 TVDMGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQV 179 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D++ +A G L+ HP F++ VN +V + LR +ERG G T ACG+ AC Sbjct: 180 V-DNVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGAC 238 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 A+VVA L R V V+ GG L I W H V MTG A +EG +++ Sbjct: 239 AAVVAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVP 291 >gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] Length = 296 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 17/290 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64 F KM+G GN +V+D + +T D DQ++++ + +D Sbjct: 5 FTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDFTY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI+N DGSEV+ CGNG RC VR++ K+ + T G++ + DG ++VDMG Sbjct: 63 RIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDMGA 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIF----FVEDDLY 176 P+ + +P A + + F + P++ VVSMGNPHA+ F + Sbjct: 123 PVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGGVD 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ +H F + VN +V S + LR +ERG G T ACG+ ACA+VVA Sbjct: 183 EAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVVAG 242 Query: 237 GCLH--KTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282 L + V V GG L IEW + V+MTG A+ + G++D+ Sbjct: 243 IRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLP 292 >gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] Length = 286 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 148/287 (51%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F K +G GN ++ID RG + N ++ I + N F D ++ I + + + Sbjct: 4 ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115 I I N DGSE Q CGNG+RC+V +L + + + ET G+ +AK D Sbjct: 64 YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+V MG PIL+ + IP + + + + F + F + V MGNPH IFFV+D Sbjct: 122 ITVKMGVPILEGQNIPTTIEKKINSIPSHEF----IEKDFSNMGYAVGMGNPHLIFFVKD 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA Sbjct: 178 -IESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIH 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ L N V + GG L I+W D+ V MTG AKK + G + Sbjct: 237 VAAYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283 >gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] Length = 309 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 142/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 80 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 139 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P A D R + P++ R VSMGNPHA+ V DD Sbjct: 140 DMGAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] Length = 292 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 140/275 (50%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T AL+ FDQ+ +I Q DA + Sbjct: 24 LPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVISQGQR---DAHL 80 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T RG L A + +G +V+MG+P Sbjct: 81 TFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAVNMGQPQ 140 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L+W+ IPLA + D ++ P+ P MGNPH FFVED L FG Sbjct: 141 LEWQDIPLAEAMDTVEL------PIEG----GPSATGMGNPHCTFFVED-AEAIPLEQFG 189 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ + VT + L +R WERGVG T A GS++CA+ VA+ T R Sbjct: 190 PRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAARRGLTGR 249 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG L I+W ++ V+MTG ++G L Sbjct: 250 KVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVL 283 >gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 269 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V+D R + ALS N H DQ+++I + ++ + D Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P Sbjct: 61 MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W IPLA + D + PV L+ P V+MGNPH +F V+D Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 GN++ +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 168 GNMIEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVS 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] Length = 286 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F K +G GN +VID RG + N ++ I + N F D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115 I I N DGSE Q CGNG+RC+V +L + K + ET G+ +AK D Sbjct: 64 YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+V MG PIL+ + IP + + + F + F + V MGNPH IFFV+D Sbjct: 122 ITVKMGVPILESQNIPTKIENKINSIPSHEF----IQKNFKYIGYAVGMGNPHLIFFVQD 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L L+ G + + +F E N+ ++ + +++ ++ WERGVG T ACG+ ACA Sbjct: 178 IL-SIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIH 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ L N V + GG L I+W D+ V MTG AK+ + G + Sbjct: 237 VAAYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283 >gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] Length = 274 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 135/277 (48%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V + + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D + +P F ++ +I H L +VSMGNPH + V DD+ +A Sbjct: 121 PNFDPQAVP----FRATKAEKTYIMRAAEHTVLCG--IVSMGNPHCVLQV-DDVNTAKVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V++ GG L I W + +FMTG A ++G Sbjct: 234 LSEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDG 270 >gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307] gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307] Length = 357 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 137/285 (48%), Gaps = 14/285 (4%) Query: 8 FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + D L D ++L Q D ++ Sbjct: 19 FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDMGE 122 I+N DGSE + CGNG+RC RFL S T ET G+++ + ++VDMGE Sbjct: 78 ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137 Query: 123 PILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L+ IP LA D + + ++ V MGNPHA+ V DDL D Sbjct: 138 PFLEPASIPTNLAAGTPLPDGE-LQVAGISLQVA----AVGMGNPHAVVQV-DDLESLDF 191 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +HP F N+ +V + + L +R WERG G T ACG+ ACA+VVA+ Sbjct: 192 DRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRG 251 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 R +V++ GG L I+W NH+ M G A +EG L G Sbjct: 252 ACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGS 296 >gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] Length = 366 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 23/287 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R D+I+ +S + F D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115 + +RI+N DGSE + CGNG+RC+ R+L + + ET+ G++ + D Sbjct: 60 EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFV 171 + VDMG P L + IP M D P L L + + V MGNPH + V Sbjct: 120 LRVDMGPPFLTPEAIPTT----VMPEDGL---PQGVLLLEDEQIRVASVGMGNPHVVVPV 172 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DDL ++G L HP F N+ +V S E L++R WERG G T ACG+ ACA Sbjct: 173 -DDLASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACA 231 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ++VA+ L + V + GG L+IEW D + V MTG A+ ++G Sbjct: 232 TLVAAVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDG 278 >gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] Length = 288 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 146/281 (51%), Gaps = 19/281 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ V D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272 VA+ K R ++V + GG L+I W + +V M G A+ Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAE 275 >gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568] gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568] Length = 274 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQTVPFRAT---KEEKTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V++ GG L I W + +FMTG A ++G Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDG 270 >gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083] gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083] Length = 273 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V D R +T + A++ +DQ++ I + A ++ + Sbjct: 9 LPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTADIE--L 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ + +R ++ + T RG+L A + G I V+MG+P+ Sbjct: 67 VFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMGQPM 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW +PLAR D ++ P+ P SMGNPH FFV +D+ +L +FG Sbjct: 127 TDWHEVPLAREMDTLEL------PIEG----KPTATSMGNPHCTFFV-NDVDAINLEAFG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + HP+F E N+ IA++ + +R WERGVG+T A GS++CA VA+ Sbjct: 176 PTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAA 227 >gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 302 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 143/290 (49%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L + HF DQI+ + +D Sbjct: 16 IQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLG---DRHFGVGADQILTVRPSPAEGID 72 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG+EV+ CGNG RC RF+ + + +T++G++ DG ++VD Sbjct: 73 FEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTVD 132 Query: 120 MGEPILDWKLIPL---ARSFDKMDR-DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVED 173 MG P+ + IP S M + + PV V VSMGNPHA+ V D Sbjct: 133 MGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLVAD 192 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +A+ G + +P F++GVN+ +V S + LR +ERGVG T ACG+ ACA+V Sbjct: 193 -VDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAAV 251 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA L + V V+ GG L I W VFMTG A + G++++ Sbjct: 252 VAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELP 301 >gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1] gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1] Length = 276 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPDLIRRLA-DRHTGVGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + S + T +G +V K + ++V+MG+P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP F +++ +I + LF VSMGNPH + V D D+ Sbjct: 124 EFEPNKIP----FKAKQKEKTYILRAGEHTLFCG---AVSMGNPHVVTVV-DSTEEADVD 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V Sbjct: 176 RLGPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKL 279 + V+V + GG L I W H MTG A ++G++ Sbjct: 236 LDENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQI 274 >gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3] gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3] Length = 288 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ +G ++ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VAS K R + V + GG L+I W + +V M G A+ G + K Sbjct: 235 VASILNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] Length = 280 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 22/290 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 ++ + F KM+G GN + ++ + D I A H D ++LI + A Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTL---SSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + + Sbjct: 59 --DFSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGV 116 Query: 117 ----SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +VDMG P+L ++ + G + FV MGNPH + FV Sbjct: 117 VKDVTVDMGTPLLSNPGQIATKTGGMLAETILADGKE----YKGTFVC-MGNPHVVIFV- 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ DL + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ Sbjct: 171 DDIKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACAT 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VA+ HK R V+M GG L I W + + HV+MTG A K +EG++++ Sbjct: 231 AVAAVLNHKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIEM 280 >gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] Length = 279 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 25/290 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 +++F KM GIGN + +D C DA+ + H+ D I+LI A Sbjct: 2 ILNFTKMHGIGNDYIYVD---CFKEKFTVEDAMKYSPILSHRHYSIGADGIILIMPSDKA 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112 V +R+ N DGSE + CGNG+RCV ++ + K ET+RGIL AK +N Sbjct: 59 DVQ--MRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNE 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 S+ ++M PIL+ IP +D++ P+ F VSMGNPH + FV Sbjct: 117 ADSVEINMDSPILEGLKIPTT-----IDKNVIIDEPITFNGKTYYFTCVSMGNPHTVIFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + D+A GN + + +F N+ V + + RTWERG G T ACG+ A A Sbjct: 172 -DDVSNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASA 230 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA +T+ + +LGG L++ + +NN VFM GEA+ +EG + + Sbjct: 231 VCVAGFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279 >gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114] gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114] Length = 276 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 143/280 (51%), Gaps = 14/280 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + S + T +G ++ K D I+V+MGE Sbjct: 65 FNADGSEVEQCGNGARCFARFV--RMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP F ++ ++ V+ L + VSMGNPH + V DD+ YD+ Sbjct: 123 PVFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHCVT-VVDDVDAYDVDK 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G L+ H F E VN ++ S + LR +ERG G T ACGS AC +V Sbjct: 177 YGQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 237 GEEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] Length = 276 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN LV+D + ++ + I + + FDQ++++ D +D Sbjct: 2 LVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC +F+ RMK + T G + RDG+ISV Sbjct: 62 YRIYNADGSEVGQCGNGARCFAKFV--RMKGLCNKHKIKVSTSTGKMNLHIERDGNISVT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M P + K IP + + + + L VSMGNPH + V D + D Sbjct: 120 MPVPQFEPKKIPFTA---QKTEGTYILRSESETVLCG--AVSMGNPHCVVTV-DSVAEAD 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + S G L+ H F E N+ + S + LR +ERG T ACGS ACA+VV Sbjct: 174 VESLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + V+V++ GG L I W H V M+G A ++G++ I Sbjct: 234 KKLAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276 >gi|255636095|gb|ACU18392.1| unknown [Glycine max] Length = 359 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 141/294 (47%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 +S + FAK G+GN ++ID R + S D N +I S Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGT 130 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 131 DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVR 190 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMGEPIL +P +K + + G + H+ VSMGNPH + F + Sbjct: 191 VDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVT-----CVSMGNPHCVTFSRE 245 Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + LA G H +F N +V S L + WERG G T ACG+ Sbjct: 246 GSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTG 305 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 306 ACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] Length = 280 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 150/288 (52%), Gaps = 18/288 (6%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI + D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDM D L+ +R + D V+ + FV MGNPH + F+ DD Sbjct: 120 VTVDM-----DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + +L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ V Sbjct: 173 IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 A+ HKT R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 233 AAYLNHKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max] Length = 359 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 141/294 (47%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 +S + FAK G+GN ++ID R + S D N +I S Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGT 130 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 131 DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVR 190 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMGEPIL +P +K + + G + H+ VSMGNPH + F + Sbjct: 191 VDMGEPILKXXDVPTKLHANKDNAVVKSELVVDGVIWHVT-----CVSMGNPHCVTFSRE 245 Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + LA G H +F N +V S L + WERG G T ACG+ Sbjct: 246 GSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTG 305 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 306 ACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] Length = 387 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T+ + AL++ HF DQ++L+ Sbjct: 101 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 157 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 158 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 217 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175 DMG P+ + +P A D R + P+ + R ++ VSMGNPHA+ V DD Sbjct: 218 DMGAPVFAPEQVPFDASGLDGRSEGRDTLWPLE-VGGRTRWISTVSMGNPHAVQVV-DDA 275 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 276 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 335 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 336 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387 >gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012] gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 280 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 269 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V+D R + ALS N H DQ+++I + ++ + D Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P Sbjct: 61 MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W IPLA + D + PV L+ P V+MGNPH +F V+D Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 GN++ +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 168 GNIIEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLIS 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 280 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 277 >gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12] gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12] Length = 287 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 143/288 (49%), Gaps = 17/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 V F KM G GN +V+D + + + L+ + HF DQI+L+ VD Sbjct: 3 VAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLA---DRHFGVGADQILLVEAAPSPEVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VD Sbjct: 60 FGYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVD 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 MG P+ D +P A D + P++ L +V +SMGNPHA+ V DD+ Sbjct: 120 MGAPVFDLPRVPFEAHGLRPRQVDGWEQWPLD-LAGATAWVSVLSMGNPHAVQRV-DDVD 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA Sbjct: 178 TAPVLRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVA- 236 Query: 237 GCLHK-TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 G H AV V+ GG L I W V MTG A ++G +D+ Sbjct: 237 GLRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284 >gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18] Length = 275 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 4/265 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +D KM+G+GN ++ D R ++T D I +S N DQ++ I + D + + + Sbjct: 4 LDAYKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDN--DKNNNTSLT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E+ +CGNG RC L K + T GIL A+ + ++MG+P Sbjct: 62 FYNSDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQPNF 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL++ D + + I + + F +S+GNPH IFFVED ++L G Sbjct: 122 KWGKIPLSKEMDNKNL-KIKINSTDDKEIEGGFSLSVGNPHIIFFVED-FNKFNLKEIGP 179 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H F E N+++A + + + + ++ WERG GLT ACG+AACA+ VA L R Sbjct: 180 KIENHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNERY 239 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGE 270 V ++ G L I+W+ +N+++MTG+ Sbjct: 240 VDIEFQEGLLNIDWNADNNIYMTGK 264 >gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] Length = 274 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 141/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ +I + H L VVSMGNPH + VED + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVED-VETAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F + N+ +V +++ LR +ERG G T ACGS ACA+ VA G L Sbjct: 174 TLGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAA-VAVGILQG 232 Query: 242 TNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 A V V + GG L I+W H +FMTG A ++G Sbjct: 233 LLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270 >gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D] gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D] Length = 292 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 135/286 (47%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIA---DRHFGVGADQLLLVERSTRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLY 176 P+ + +P + R H N VSMGNPHA+ V DD Sbjct: 122 APVFEAARLPF---LPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIV-DDTE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V GG L I W V MTG A +EG LD+ Sbjct: 238 IRRGVLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDL 283 >gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 275 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G+GN +V+D N+ I L+ + HF DQ++L+ + D Sbjct: 3 LKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLA---DRHFGIGCDQLLLVEK-AEGQAD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC VR++ + ET+ G++ + +G+I+V+ Sbjct: 59 FRYRIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVN 118 Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+PI + + IP +A + PV L SMGNPHA+ V D+ Sbjct: 119 MGKPIFEPERIPFIADQCALTYQLELPDSPVTICAL------SMGNPHAVRVV-TDIARA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A+ G L+ +H F VN+ +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 172 PVATEGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGIT 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L +R V V GG L I W V+MTG A +EG++++ Sbjct: 232 LGLLDRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275 >gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 274 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 138/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ +I + H L VVSMGNPH + VED + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVED-VETAKVD 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 174 TLGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + +V V + GG L I+W H +FMTG A ++G Sbjct: 234 LSASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270 >gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] Length = 294 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 22/294 (7%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFV 171 DMG P+ +P A D R + P++ R VSMGNPHA+ V Sbjct: 120 DMGAPVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV 179 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA Sbjct: 180 -DDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACA 238 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 +V A + V+V GG L I W + + M G A +EG++D+ Sbjct: 239 AVAAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDL 292 >gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] Length = 288 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 17/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F KM G GN +V+D G H ++T++ AL++ HF DQ++++ Sbjct: 3 LQFTKMHGAGNDFVVLD--GIHQKLDLTTEQWRALAS---RHFGVGADQMLIVEKPTRED 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++ Sbjct: 58 VDFRYRIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175 VDMG P L+ +P + I + R ++ VSMGNPHA+ V DD+ Sbjct: 118 VDMGAPELEPARVPFRPDGLPVRTQGEDIAYGLEINGRTAWISPVSMGNPHAVQVV-DDV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ + G L+ H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 ENFPVLQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W V MTG A +EG +D+ Sbjct: 237 GIRRGLLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDL 283 >gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] Length = 278 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 144/284 (50%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN ++ID R H + + + HF D ++ Q+ + D Sbjct: 3 IEFTKYHGLGNDFILIDNR--HQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQNGT-D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ +F L + + +T+ G++ + DG + V Sbjct: 60 YTMRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P L IP + + DR + +L VSMGNPH I FVED + Sbjct: 120 DMGIPRLLAAEIP--TTLESPDRKVVELPLEVAGQSWLVT--CVSMGNPHCITFVED-VS 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G L H +F + N ++ + + +R WERG G+T ACG+ ACASVVA Sbjct: 175 AIALETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R +V++ GG L IEW + ++MTG A + + GK+ Sbjct: 235 VLAGKCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278 >gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032] gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032] Length = 274 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PVFEPSLVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ ++ + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V + GG L I W N +FMTG A ++G Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDG 270 >gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] Length = 278 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 11/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM G+GN ++++ G A+ D L+ A+ D +R Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSAAADLRMR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---SISVDM 120 + N DGSE + CGN +RCV + R + + ET+ G++ + DG ++ VDM Sbjct: 61 VFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ IP+ + + G + + VSMGNPH + F DL Sbjct: 121 GRPRLERAEIPMRGPAGPVVGEVLDAGERSFMVT----AVSMGNPHCVVF-GADLDDAGF 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G LL HP F N+ V S + +R WERGVG T ACG+ ACA VA Sbjct: 176 RKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVLTG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 +T R V V++ GG LLIEW D+ V+M+G A++ ++GK Sbjct: 236 RTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274 >gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] Length = 279 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K G+GN +++D R + + A+ D HF D ++ ++ + D Sbjct: 3 IEFTKYHGLGNDFILVDNRASSLPVLTPE-QAIQLCDR-HFGIGADGVIFALPGENGA-D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ RF+ + S+ T+ G++ + DG + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVK 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L IP L + K+ + VSMGNPH I FV D+ Sbjct: 120 VDMGLPRLLAGEIPTTLGTAETKVINQPLEVAGQTWEVT----CVSMGNPHCITFV-SDV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G HP F + +N +V S + + +R WERG G+T ACG+ ACAS+VA Sbjct: 175 AAIPLEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + + ++MTG A+K + G+L Sbjct: 235 GVLTGNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279 >gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02] Length = 274 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 8/262 (3%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM+G+GN ++ID R + ++ D I + + DQ+++I ++ +DA + N Sbjct: 7 KMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELEFYNS 64 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGEPILDW 127 DGS +CGNG RCV FL+ +K T T G+L K N GS + ++G P +W Sbjct: 65 DGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVL--KSNILGSNLVETEIGTPKTNW 122 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPL+++ D + + I N+ V++GNPH +FFV+D + ++DL G + Sbjct: 123 NEIPLSKNLDTKNLN-IKILSKNNTEHIGGAAVNVGNPHIVFFVKD-IENFDLKKIGPEI 180 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H +F E N+++A+V + + ++ WERG GLT ACG+AACAS +A + Sbjct: 181 ENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKKTD 240 Query: 248 VKMLGGGLLIEWHDNNHVFMTG 269 ++ G L I N V M G Sbjct: 241 IEFKLGKLSIFIDAKNSVHMKG 262 >gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] Length = 290 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 153/301 (50%), Gaps = 41/301 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D +T D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 +RI N DGSE ++CGNG+RCV ++ + ++F ET+ G++ A+ + S+ Sbjct: 63 -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVADGEVTSV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPH 166 +VDMGEP L+ IP+ +GP + PF VSMGNPH Sbjct: 122 TVDMGEPRLERSAIPM-------------LGPEAERVVAEPFAIAGGEYEITAVSMGNPH 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 IF+V DD+ + + G L+ K P F EGVN+ V + L R WERG G+T ACG Sbjct: 169 VIFYV-DDIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACG 227 Query: 227 SAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 + ACA+VVAS KT R V + GG L I W + V MTG A+ G + G Sbjct: 228 TGACAAVVASVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGG 287 Query: 285 K 285 + Sbjct: 288 R 288 >gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 262 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/266 (38%), Positives = 147/266 (55%), Gaps = 17/266 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID R ++ N D + DQ+++I + D F+ I Sbjct: 8 NFIKMHGTGNNFVIIDSRSTNN----LDWNHRQIADQSSCDQVIIIT--MSNAADCFMHI 61 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGN RCV + S + E T + IL + D SI V+MG+P+L Sbjct: 62 YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + H+ P+ L++P V++GNPH +FFV D++ L + G Sbjct: 122 KWHEIPLSTECDTL-----HL-PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS + + Sbjct: 175 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVAQ 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270 SV + GG LLIEW +N VFMTG+ Sbjct: 235 QTSVNLPGGKLLIEWANN--VFMTGD 258 >gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] Length = 278 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 149/291 (51%), Gaps = 38/291 (13%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D ++L+ D Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLD 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110 + A D +RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ + Sbjct: 51 SKLA--DIRMRIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFI 108 Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 N G + V+MG+P K IP+ + K D I + + + MG PH Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPM-QGDPKSDAINTSIVVDGNEYRITSLL--MGVPHT 165 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I FV DDL D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ Sbjct: 166 ILFV-DDLEKVDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +CASV+A+ T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 225 GSCASVIAANLNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGE 275 >gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] Length = 284 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D R +N + + D ++LI A D + Sbjct: 5 IKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE + CGN RC+ ++L + T +T+ GI + K + G +++V Sbjct: 63 RIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDTVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P D + + M I + + VSMGNPH + FV +D+ Sbjct: 123 DMGIP-SDEPVNYDGKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDITKA 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL+S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 237 TGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1] gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1] Length = 277 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 138/285 (48%), Gaps = 24/285 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VID ++T + + L+ + HF DQ++++ + VD Sbjct: 5 FTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLA---DRHFGIGCDQLLVVEEATRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ + ++ ET GI+ + DG ++VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P+L+ +P D + V L + V VSMGNPHA+ V D Sbjct: 122 VPVLEPARVPFVSDSDAI---------VQPLDVGGETVAITAVSMGNPHAVQVVADVDAA 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 A G L+ +HP F VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 173 PVAAQ-GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVI 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V+ GG L I W V MTG A + G++D+ Sbjct: 232 LRELAQSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDV 276 >gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 278 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 38/291 (13%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D ++L+ + Sbjct: 3 FSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLN 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107 A D +RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ V Sbjct: 51 SDIA--DIRMRIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFV 108 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + + V+MG+P K IP+ + + + N + + + MG PH Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRITS---LLMGVPHT 165 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I FV DD+ D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ Sbjct: 166 ILFV-DDVEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +CASV+A+ T R +V + G L I+W D++ VFMTG A++ + G+ Sbjct: 225 GSCASVIAANLNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGE 275 >gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] Length = 278 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RFL + +K T G + + D + V+MGE Sbjct: 65 RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP + + + H L VVS+GNPH + VED + ++A Sbjct: 125 PVFTPRQIPFCAT---TTEKTYILRTAGHTTLCG--VVSIGNPHCVLQVED-VATANVAL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + N+ ++ ++++LR ERGVG T ACGS ACA+V Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V VK+ GG L I+W H ++MTG A ++G + + Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278 >gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] Length = 269 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 35/288 (12%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ +R AI + D ++LI A D + Sbjct: 5 IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G +++V Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P+ D +D D PF+ VSMGNPH + FV DD+ Sbjct: 123 DMGVPL----------ETDTIDFDG-----------EFPFLSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 309 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 142/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 80 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVV 139 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P A D + P++ R VSMGNPHA+ V DD+ Sbjct: 140 DMGAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 258 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] Length = 281 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 22/288 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 M+ M F KM+G+GN + ++ C D + HF D ++LI+ + Sbjct: 1 MEKKM-KFTKMQGLGNDYVYVN---CFKEKIEDPSALAVRISDRHFGVGSDGLILINPSK 56 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKE 110 A D + + N DGS + CGNG+RCV +++ +++ + ET+ GI + Sbjct: 57 VA--DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIEN 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + VDMG PIL IP+ ++ + + + +SMGNPHAI + Sbjct: 115 GKVAKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYRMT----CISMGNPHAIVY 170 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ + + G L KH F VN +V ++++R WERG G T ACG+ AC Sbjct: 171 V-DDVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGAC 229 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 A+ VA T V+VK+LGG L IEW + N VFMTG AK ++G Sbjct: 230 ATAVACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDG 277 >gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] Length = 290 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 41/301 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D +T D ++LI + A + Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPLK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 +RI N DGSE ++CGNG+RCV ++ ++ ++F ET+ G++ A+ + S+ Sbjct: 63 -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPH 166 +VDMGEP L+ IP+ +GP + PF VSMGNPH Sbjct: 122 TVDMGEPRLERSAIPM-------------VGPKAERVVAEPFTIAGGEYEMTAVSMGNPH 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 IF+V DD+ + + G L+ K P F EGVN+ V + L R WERG G+T ACG Sbjct: 169 VIFYV-DDIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACG 227 Query: 227 SAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 + ACA+VVAS KT R V + GG L I W + V MTG A+ G + G Sbjct: 228 TGACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGG 287 Query: 285 K 285 + Sbjct: 288 R 288 >gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] Length = 280 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 277 >gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9] gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum SS9] Length = 276 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 14/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + AI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I V R F VSMGNPH + V DDL D+ Sbjct: 123 PEFEPSKIP----FRAKQTEKTYIMRVGE---RTIFCGTVSMGNPHCVTVV-DDLELTDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 175 DTLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG ++G++ Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] Length = 289 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 119 Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P S D R + P++ R VSMGNPHA+ V DD+ Sbjct: 120 DMGAPVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 239 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 287 >gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] Length = 279 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 38/293 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 FAKM G GN + ++ C + D N +F D ++LI + A D Sbjct: 3 FAKMHGAGNDYVYVN---CFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRDG--SI 116 +R+ N DGSE + CGNG+RCV ++ +++K T ET GIL + +RD + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERV 117 Query: 117 SVDMGEPILDWKLIPLARSFDK---------MDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 V+MG+P L IP+ S ++ +DR FHI VSMGNPH Sbjct: 118 RVNMGKPRLTRGEIPMTGSPEEQVINAELKVLDRT-FHIT-----------CVSMGNPHC 165 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I FV D++ + +A +G ++ PMF N+ + S + RTWERG G T ACG+ Sbjct: 166 IIFV-DNVDEFPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGT 224 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + A VA +T R + +LGG L +EW ++ V+MTG A + +EG D Sbjct: 225 GSSAVTVACVLNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFD 277 >gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] Length = 276 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D ++T++ + L+ + HF DQI+L+ DAS D Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLA---DRHFGVGCDQILLVEKAHDASAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG + V+ Sbjct: 60 FRYRIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+ D IP S ++ + + L + +VSMGNPHA+ V DD+ Sbjct: 120 MGAPVFDAARIPF--SGGTIEVMQPLVVADQTLMVS---IVSMGNPHAVQVV-DDVERAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ H F + VN ++ + + LR +ERG G T +CG+ ACA+VV+ Sbjct: 174 VEVLGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRR 233 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + VSV GG L I W + V MTG A + G++++ Sbjct: 234 GLLDSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276 >gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 263 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/268 (38%), Positives = 148/268 (55%), Gaps = 21/268 (7%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID R ++ N D + DQ+++I + D F+ I Sbjct: 9 NFIKMHGTGNNFVIIDSRSTNN----LDWNHRQIADQSSCDQVIIIT--MSNAADCFMHI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGN RCV + S + E T + IL + D SI V+MG+P+L Sbjct: 63 YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + H+ P+ L++P V++GNPH +FFV D++ L + G Sbjct: 123 KWHEIPLSTECDTL-----HL-PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKT 242 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS G L Sbjct: 176 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSL--V 233 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 + SV + GG LLIEW +N VFMTG+ Sbjct: 234 AQQTSVNLPGGKLLIEWANN--VFMTGD 259 >gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42] gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42] Length = 284 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 17/276 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + + A+ S D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D I +V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVAV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP L K +P+ + D+ D + L + VSMGNPH +F V D + Sbjct: 124 DMGEPRLTKKELPMLGNEDERTIDETFVFGETEL---SGTAVSMGNPHIVFPVAD-INQA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236 L + G ++ K P F EGVN+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 180 PLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASVL 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + + NR ++V + GG L+I W DN HV MTG A+ Sbjct: 240 NGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAE 275 >gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] Length = 370 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D ++T+ + AL+ N HF DQ++L+ VD Sbjct: 62 LKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALA---NRHFGVGADQLLLVEKPTVEGVD 118 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VD Sbjct: 119 FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIVD 178 Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ D +L+P A + R+ + P++ + R VVSMGNPHA+ V DD Sbjct: 179 MGTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEA 237 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+V A Sbjct: 238 FPVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAGI 297 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + M G A +EG++++ Sbjct: 298 RRGLLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL 344 >gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] Length = 280 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 140/284 (49%), Gaps = 14/284 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVD 61 S + F+KM G+GN +V+D + + + I L+ D NT FDQ++++ D +D Sbjct: 5 SYMQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLA-DRNTGIGFDQLLVVEAPYDPDLD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC RF L ++ T G +V D I V+ Sbjct: 64 FHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVN 123 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEP + + +P A +K + I V L VV+MGNPH + VED + Sbjct: 124 MGEPDFEPQRVPFRANKAEKT----YIIRAVERTVLCG--VVAMGNPHCVIQVED-VNTA 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G L H F E VN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 177 DVEVLGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQ 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VSV + GG L I W +FMTG A ++G + + Sbjct: 237 QDLLDNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280 >gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271] gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271] Length = 268 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +G ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586] gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586] Length = 276 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + S + T +G +V + I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I V LF VSMGNPH + V DD+ Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQI 274 >gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 287 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/289 (36%), Positives = 145/289 (50%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + I+ G + I S A D HF D ++LI A+ D Sbjct: 7 FTKMQGIGNDYVYIN--GFQERIDSPGELARKISDR-HFGIGSDGLVLI--LPSATADVR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV +++ + T ET G+ L+ + + + Sbjct: 62 MRMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGAT 121 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE--D 173 VDMGEP L IP L + + RF PV+ + L VSMGNPHA+ F++ D Sbjct: 122 VDMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKGID 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL DL G HP+F + N A V S + +R WERG G T ACG+ ACA Sbjct: 182 DL---DLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVA 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VA R V V++ GG L I W + +NHV+MTG A + G+ I Sbjct: 239 VACVLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287 >gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916] gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916] Length = 372 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCHD-NITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 M+ F+K +G+GN ++I+ R G D +ITS + + F D I+L + Sbjct: 1 MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +S++ ET G+++ DG Sbjct: 61 G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P+L +P + + + + +N L+ V MGNPH + V D L Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGELT-INGDLLKV-AAVGMGNPHVVVPVPD-L 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L P F N+ +V ++LD+R WERG G T ACG+ ACA++VA Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + L + V + GG L I W D VFMTG A+ ++G Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDG 279 >gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] Length = 274 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 146/289 (50%), Gaps = 32/289 (11%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M N AI + D ++LI + A D + Sbjct: 5 IRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRDGS---- 115 RI N DGSE CGN RC+ +++ + +K+ T ET GI + GS Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSREEV 122 Query: 116 --ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P++ + + F+ G V VSMGNPH + FVED Sbjct: 123 IEVTVDMGCPVVGEAALEIEAG------GYFYTGTV----------VSMGNPHLVIFVED 166 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + +L + G LL HP+F N+ +V +++ + ++ WERG G+T ACG+ ACA+ Sbjct: 167 -IANINLPAIGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGACATA 225 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VA KT R V M GG L I W +++ HV+MTG A K +EG+L+I Sbjct: 226 VAGVIRRKTGRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274 >gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 280 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQISEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHAI FV DD+ L Sbjct: 119 APRLTRAEIPMLGEDETPFIRENFLYN--NHRYAFT--AVSMGNPHAIIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYEYK 277 >gi|255645761|gb|ACU23373.1| unknown [Glycine max] Length = 359 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 142/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + S A+ + D ++ + + + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPGINGT 130 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N D SE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 131 -DYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEP+L +P +K D V + + VSMGNPH + F + Sbjct: 190 RVDMGEPVLKALDVPTKLPANK-DNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +V A+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium] Length = 305 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 144/308 (46%), Gaps = 39/308 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ + HF DQI+ + VD Sbjct: 3 IRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLA---DRHFGVGADQILSVRAAPGPGVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC VR++ R ++ + G++ E DG ++VD Sbjct: 60 FEYVIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPF-------------------- 158 MG P+ + IP FD G HL+ P Sbjct: 120 MGAPVFELPRIP----FDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVN 175 Query: 159 --VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 V+SMGNPHA+ V D + +A G L+ HP F + VN ++ ++ LR +E Sbjct: 176 VAVLSMGNPHAVQLVAD-VEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYE 234 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKE 274 RGVG T ACG+ ACA+VVA L + V V GG L IEW + + VFMTG A Sbjct: 235 RGVGETLACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTV 294 Query: 275 WEGKLDIK 282 +EG+ +I Sbjct: 295 FEGETEIP 302 >gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 285 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 30/293 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61 F KM GIGN + ++ C + S+ + HF D ++LI D D +D Sbjct: 3 FTKMHGIGNDYVYVN---CFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIADCEMD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDG 114 + N DGS+ CGNG+RCV ++ + + S + T GI + K+ + Sbjct: 60 MY----NLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVA 115 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V+MG PIL + IP+ + +++ + H+ G H+ VSMGNPHAI ++ D Sbjct: 116 LVKVNMGAPILTSRQIPVVSTKEQVINEPLHVDGETYHIT-----AVSMGNPHAIVYM-D 169 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L + D+ G H F + +N +V +L +R WERG G T ACG+ ACA Sbjct: 170 ALKNLDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVA 229 Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 VAS L ++ V+VK+LGG L I W+ N V+MTG A ++G++D+ + Sbjct: 230 VASTLNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSS 282 >gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] Length = 284 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D R +N + + D ++LI A D + Sbjct: 5 IKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE + CGN RC+ ++L + T +T+ GI + K + G +++V Sbjct: 63 RIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDTVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P D + + M I + + VSMGNPH + FV +D+ Sbjct: 123 DMGIP-SDEPVNYDGKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDITKV 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL+S G L HP+F + N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 237 TGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 274 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 137/277 (49%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ +I + H L VVSMGNPH + VE D+ + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 174 TLGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V + GG L I+W H +FMTG A ++G Sbjct: 234 LSANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDG 270 >gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605] gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605] Length = 368 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 33/294 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIH 53 M+ F+K +G+GN L+++ R +A+S D +I +++ Sbjct: 1 MLQFSKYQGLGNDFLIVEGR------QGQLPDAISNPDPAWVRRICDRRFGVGGDGLILA 54 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKE 110 A + +RI+N DGSE + CGNG+RC+ R+L + + ET+ G++ + Sbjct: 55 LPAQADGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPEL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPH 166 DG + VDMG P L + IP M D P L L + V MGNPH Sbjct: 115 MADGQLRVDMGPPFLSSEGIPTT----LMPEDGL---PQGVLLLEGEQLKVAAVGMGNPH 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + V DDL ++G L HP F N+ +V + E L++R WERG G T ACG Sbjct: 168 VVVPV-DDLASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACG 226 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + ACA++VA+ L + V + GG L+IEW D V MTG A+ ++G L Sbjct: 227 TGACATLVAAVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVL 280 >gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 280 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FVED + L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED-VEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] Length = 308 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID N+ I L+ + FDQ++LI +D Sbjct: 32 IKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGIDFNY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + + T T + + N D S+ V+MG Sbjct: 92 RIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVEMGI 151 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IPL+ + + H +S+GNPHA+ V+D + + + Sbjct: 152 PQLNPAAIPLSAEHQAAEYQL----ELQHGQTATMHAISVGNPHAVLLVKD-VETAPVPT 206 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ ++ HP F N+ ++ + + + LR +ERG G T ACGS A A+V H+ Sbjct: 207 LGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLYHRL 266 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ++ V+V + GG L+I+W D + +TG A +EG+L Sbjct: 267 DKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQLS 305 >gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 279 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 148/290 (51%), Gaps = 35/290 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ + + S + A D HF D ++LI + A D Sbjct: 5 FTKMQGLGNDYVYVNC--LKEKVESPSEMARRVSDR-HFGVGSDGLILICPSECA--DFE 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +++ N DGS + CGNG+RCV +++ + + ET+ GI L +E + + Sbjct: 60 MKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVK 119 Query: 118 VDMGEPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 VDMG PI + IP+ D +D D + + VSMGNPHA+ + Sbjct: 120 VDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM-----------TCVSMGNPHAVVY 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + DD+ + ++ G HP F VN ARV E++++R WERG G T ACG+ AC Sbjct: 169 L-DDIQNMEIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGAC 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 A VAS T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 228 AVAVASMVNGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277 >gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 281 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 21/284 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +G+GN ++ID R + + + I D HF D ++ Q A+ D Sbjct: 3 IPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDR--HFGIGADGVIFALPGQ-AATD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI 116 +RI N DGSE + CGNG+RC+ +F+ +R++ +++ T+ G ++ + + + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAQFI-ARLEANNTIGRTYRIHTLAGTIIPRLEANEQV 118 Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +VDMG P L IP L + +K+ + + L VSMGNPH + FV DD Sbjct: 119 TVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLIT----CVSMGNPHCVTFV-DD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L L + G HP+F + N+ V + + +R WERG G+T ACG+ ACA VV Sbjct: 174 LASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 A+ K +R +V++ GG L I W D +N V+MTG AK +EG Sbjct: 234 AAVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277 >gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R] Length = 272 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 35/288 (12%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ +R AI + D ++LI A D + Sbjct: 8 IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G +++V Sbjct: 66 RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P L+ I F PF+ VSMGNPH + FV DD+ Sbjct: 126 DMGVP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 163 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 164 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 223 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 224 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 271 >gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] Length = 285 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 146/288 (50%), Gaps = 21/288 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 S + F K +G+GN +++D R +T + AL N F D ++ + Q+ Sbjct: 2 PSRLSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALC---NRRFGVGADGVIFLLPGQE 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDG 114 + D +R+ N DGSE + CGNG+RC+ RFL + ++ T+ G +V + DG Sbjct: 59 GA-DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDG 117 Query: 115 SISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++VDMG P L IP LA+ +K+ R +G VSMGNPH + F+E Sbjct: 118 LVTVDMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGREWAVT----AVSMGNPHCVVFLE 173 Query: 173 D--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L DL G L HP F E N A+V L LR WERG G+T ACG+ AC Sbjct: 174 EGGSLEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGAC 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 A++VA+ + +V++ GG L I W D HV+MTG A + G Sbjct: 234 AALVAAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSG 281 >gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] Length = 269 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 35/288 (12%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ +R AI + D ++LI A D + Sbjct: 5 IQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G +++V Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P L+ I F PF+ VSMGNPH + FV DD+ Sbjct: 123 DMGIP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS] gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS] Length = 284 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 149/290 (51%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +ML+ A D +R Sbjct: 1 MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLL--LPSAKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178 P+ + IP+A D I P+N + R V VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G+L+ H F + N +A + E + +R WERGVG T CGS A A VA+ Sbjct: 178 LLGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 L + V +K+ GG L +EW ++ V++TG+A+ I TG+W+K Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280 >gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] Length = 275 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 17/281 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN +VID + +++ D D FDQ++++ ++ D Sbjct: 5 FTKMHGLGNDFIVID--AINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRY 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ ++ + ET GI++ +G +SVDMG Sbjct: 62 RIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDMGI 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLA 181 P D IP F +R + VN + VSMGNPHA+ V D DL + Sbjct: 122 PRFDPARIP----FITQERALTYPLNVNDREIEIS-AVSMGNPHAVQIVPDIDLA--PVT 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G + HP F E VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 175 SEGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRGL 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V M GG L I W ++ V+MTG A +EG +D+ Sbjct: 235 LDSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275 >gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] Length = 274 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +++D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D + +P F ++ +I H L VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQTVP----FRAAKAEKTYIMRAAEHTVLAG--VVSMGNPHCVLQV-DDVKTAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQEL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V++ GG L I W +FMTG A ++G Sbjct: 234 LSEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDG 270 >gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] Length = 323 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 148/293 (50%), Gaps = 24/293 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQ-----IMLIHDFQDAS 59 ++FAK EG+GN ++ID R +T + L N +F I + QD Sbjct: 39 IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLC---NRNFGVGGDGVIFALKAPQD-- 93 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118 D +RI N DGSE + CGNG+RC +FL + KS+ T+ G +V + N D +I+V Sbjct: 94 YDFTMRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNPD-TITV 152 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPILD +P + + ++ H+ + + VSMGNPHAI FV+D Sbjct: 153 DMGEPILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKIS--AVSMGNPHAIIFVDDLE 210 Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 D A G L F N+ +V S L ++ WERG G T ACG+ CA VV Sbjct: 211 KDIDFAVDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVV 270 Query: 235 ASGCLHKTNRA----VSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 A+ +K R V V + GG L IEW +NN ++MTG A ++G +K Sbjct: 271 AAIRANKIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGTALLK 323 >gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] Length = 288 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE ++CGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ Sbjct: 62 K--MRMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP L R+ F NH + VSMGNPHA+ FV D Sbjct: 120 LVKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] Length = 277 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 23/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN + ++ C + A + HF D +++I + A D Sbjct: 3 FTKMHGLGNDYVYVN---CFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + + + ET+ G+ L K+ + I Sbjct: 58 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L + IP+ D + + + G + + VSMGNPHA+ FV DD+ Sbjct: 118 VDMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMT-----GVSMGNPHAVIFV-DDVK 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +L + G H F + VN ARV E++++R WERG G T ACG+ ACA VA Sbjct: 172 GLELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVAC 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG LLIEW + + V+MTG A ++G++ I Sbjct: 232 ILNGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277 >gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] Length = 300 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D N+T + + AL+ + HF DQ++L+ VD Sbjct: 16 LKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALA---DRHFGVGADQLLLVEKPTVDGVD 72 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + ++S + G + +G + VD Sbjct: 73 FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLVD 132 Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + + +P A + R+ + P++ + R VVSMGNPHA+ V DD+ Sbjct: 133 MGSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 191 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 192 FPVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGI 251 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281 + V V GG L I W N + M G A ++G++++ Sbjct: 252 RRGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIEL 298 >gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W] gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W] Length = 280 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] Length = 280 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 18/288 (6%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI + D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDM D L+ +R + D V+ + FV MGNPH + F+ DD Sbjct: 120 VTVDM-----DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + +L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ V Sbjct: 173 IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 A+ HK R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 233 AAYLNHKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908] gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908] Length = 279 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 149/282 (52%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ FAKM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFAKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC RF+ ++ + T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVN 118 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P+LD IP A+ +K + FL +SMGNPH + VE D+ H Sbjct: 119 MGVPVLDPSKIPFNAKRVEKTYLLQTSSSHAMETFLCG--AISMGNPHCVLEVE-DIEHA 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G LL ++ F +GVN+ +V + LR +ERG T ACG+ ACA+ Sbjct: 176 EVERIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K N+ V V + GG L I W + N ++MTG A+ ++G++ Sbjct: 236 QGKLNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277 >gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 268 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +G ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] Length = 268 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ DG ++ +DMG P L IP L S R+ F NH + Sbjct: 86 IVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + + ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVA+ K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] Length = 284 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 152/288 (52%), Gaps = 41/288 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + ++M + I ++ L+ ++ NT D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVNM--FEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSIS-- 117 +RI N DGSE ++CGNG+RCV +++ + +SF ET+ G++ A+ E +G+++ Sbjct: 63 -MRIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNV 121 Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNPH 166 +DMG+P L IP+ +GP + PF VSMGNPH Sbjct: 122 TIDMGKPRLKRSEIPM-------------VGPEAERVVAEPFEVDGQLYEITAVSMGNPH 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 IF+V DD+ + S G ++ K F EGVN+ V + L R WERG G+T ACG Sbjct: 169 VIFYV-DDINQAAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACG 227 Query: 227 SAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ACA+VVAS KT N+ V + GG L I W D +V MTG A+ Sbjct: 228 TGACAAVVASVLNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAE 275 >gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383] Length = 289 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 140/290 (48%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ V Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGV 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P A D + P++ R V+MGNPHA+ V DD Sbjct: 120 DMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 179 AYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + V+V GG L I W + + M G A +EG++D+ Sbjct: 239 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLP 288 >gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] Length = 276 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 137/285 (48%), Gaps = 24/285 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN ++ID IT + L+ + HF DQ++++ + D Sbjct: 5 FTKMHGLGNDFVMIDAISQKVTITPERARKLA---DRHFGVGCDQVLVVESPDNPDADFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC F+ R + ET G+L D ++V+MG Sbjct: 62 YRIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P+L IP H P L L N + VSMGNPHA+ V D+L Sbjct: 122 VPVLAPAQIPFVTP---------HEQPEYPLQLDNMEITISAVSMGNPHAVTLV-DNLAS 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + + G + H F VN + S + + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 172 FPVKTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGI 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W V MTG AK + G++ + Sbjct: 232 VRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276 >gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 309 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 140/290 (48%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++L+ V Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGV 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 80 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 139 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ +P A D + P++ R V+MGNPHA+ V DD Sbjct: 140 DMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAE 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 199 AYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAG 258 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + V+V GG L I W + + M G A +EG++D+ Sbjct: 259 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLP 308 >gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293] gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293] Length = 268 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +G ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] Length = 268 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +G ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 10/278 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 3 QMMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF L ++ T G +V D + V+M Sbjct: 63 HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP D +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 123 GEPNFDPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVQTAAV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 177 ETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQG 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 237 LLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDG 274 >gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] Length = 276 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 142/286 (49%), Gaps = 22/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID ++T + I L FDQ++L+ ++A D Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC +F+ + + ET RG++ + DG VDMG Sbjct: 63 RIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDMGV 122 Query: 123 PILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P +P A ++ + R IG + SMGNPHA+ V DD+ Sbjct: 123 PRFRPADLPFLADAEALTYSLPLPEGRCEIG-----------IASMGNPHAVQRV-DDVD 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G + HP F + VN ++ + + LR +ERG G T ACG+ ACA+VV Sbjct: 171 AAPVAEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCG 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V GG ++IEW + + V MTG A ++G++++ Sbjct: 231 IRQGLLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276 >gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora] gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora] Length = 376 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 147/289 (50%), Gaps = 22/289 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALSTDDNTHF----DQIMLIHDF 55 M+ F+K G+GN L+ID R N + + L + HF D +++I Sbjct: 1 MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLC---DRHFGVGADGVIIILS- 56 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENR 112 D +RI N DG+E Q CGNG+RC+ +FL M + ET+ GI+V++ Sbjct: 57 PTLEGDWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKE 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFV 171 + I VDMG PIL IP S + +D IG + + + MGNPH + V Sbjct: 117 NDMIYVDMGIPILSPHDIPTRLS---VGQDNIAIGLIETNGITWSVAAAGMGNPHIVIPV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D D+ FG LL +H F N+ +V L LRTWERGVG+T ACG+ ACA Sbjct: 174 KD-AEDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +++ + L +++ + + GG LL+ W +NH+ + G AK ++G L Sbjct: 233 ALIVAHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVL 281 >gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] Length = 276 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 144/284 (50%), Gaps = 26/284 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ D NT FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFVVVDCITQNVFFSPDLIRRLA-DRNTGIGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DG EV+ CGNG RC RF+ RMK + + T +G ++ D ++V+MG Sbjct: 64 IFNSDGGEVEQCGNGARCFARFV--RMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F R++ +I LF VS+GNPH + VE+ L Sbjct: 122 VPEFEPSKIP----FKAKQREKTYILRAQDKTLFCG---AVSLGNPHVVTVVEE-LSDAL 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236 + G +L H F E VN +V S + LR +ERG G T ACG+ ACA+V +A Sbjct: 174 IDEIGPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQ 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 G L + V+V + GG L I W D ++MTG A ++G+L Sbjct: 234 GLL---DENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQL 274 >gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS] gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS] Length = 300 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ + HF DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC +RF+ + +T+ G++ + DG ++VD Sbjct: 60 FQYVIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVD 119 Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG PI + +P A+ ++ +G + + V+SMGNPHA+ V D Sbjct: 120 MGAPIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVV-D 178 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ +A G + HP F + VN +V + LR +ERG G T ACG+ ACA+V Sbjct: 179 NVDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAV 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 VA L V V+ GG L IEW + V MTG A +EG +D+ Sbjct: 239 VAGIRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288 >gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] Length = 278 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D +SV+MG Sbjct: 64 YRIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP + + IP F + ++ +I H L VVSMGNPH + V DD+ ++ Sbjct: 124 EPNFEPQAIP----FKAIKAEKTYILRAAEHTVLCG--VVSMGNPHCVLQV-DDVSAANV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 177 ELLGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQA 236 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V V++ GG L I W ++MTG A ++G Sbjct: 237 LLDEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDG 274 >gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis] Length = 303 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 144/293 (49%), Gaps = 19/293 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 ++ V FAK +G+GN +++D R + + + D N D ++ ++ + Sbjct: 16 AAAVKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSENGT- 74 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE---TIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC+ RF+ + + + T+ G++ DG + Sbjct: 75 DYSMRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVC 134 Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VDMGEPIL +P + + + + + L VSMGNPHAI F D Sbjct: 135 VDMGEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKEWLMT----CVSMGNPHAITFGLAD 190 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + DL G +P+F N V S + + WERG G T ACG+ A Sbjct: 191 GSSIKVDSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGA 250 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA+VVA T+R+ V + GG L IEW + +NH++MTG A+ + G +D+ Sbjct: 251 CATVVAGVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303 >gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573] gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573] Length = 276 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 141/281 (50%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + + T +G +V + I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I V LF VSMGNPH + V DD+ Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 274 >gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] Length = 285 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 24/293 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN + ++ C + + + HF D ++ IH Sbjct: 4 RSDSMKFTKMHGCGNDYVYVN---CFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDK 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111 A D + + N DG+E CGNG+RC+ +++ + + T ET GI L ++ Sbjct: 61 A--DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDG 118 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + ++VDM P+L+ IP+ +K D+ I + VSMGNPH + FV Sbjct: 119 KVTWVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGREYRIT---CVSMGNPHGVVFV 175 Query: 172 E--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + DDL D+ G + HPMF + VN +V ++ +R WERG G T ACG+ A Sbjct: 176 DSVDDL---DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGA 232 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 CAS AS KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 233 CASAYASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285 >gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341] gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341] Length = 276 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 141/281 (50%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + + T +G +V + I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I V LF VSMGNPH + VED + Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVVED-IRTAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 234 GLLDEQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQI 274 >gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] Length = 274 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 155/287 (54%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VI+ +N+ + D HF D ++++ D Sbjct: 3 FTKMHGLGNDFIVIE---ALENVDYSELAVKLCD--RHFGIGADGLLVVE--PSGIADIR 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117 +RI N DGSE + CGNG RC +++ R +K++ T ET+ G+++ K + S+ Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVK 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174 V MG PI + IP+ K D+ +F PV ++ + +G PH I FVE Sbjct: 116 VYMGNPIFETSKIPI-----KTDKQKFINEPVKIDGKVYKLTS--IRVGVPHTIVFVES- 167 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L + G+ + K +FS+G N+ +V E++ +RTWERGVGLT ACGS ACAS V Sbjct: 168 LDENMIKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAV 227 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS L KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 228 ASAVLGKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 274 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN +VI+ R D + AI D ++++ D +RI Sbjct: 3 FTKMHGLGNDFIVIEARENVD-YSELAIKLCDRHFGIGADGLLVVE--PSGIADIRMRIF 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMG 121 N DGSE + CGNG RC +++ R +K++ ET+ G+++ + EN + S+ V MG Sbjct: 60 NADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 PI + IP+ K D+ +F PV + + +G PH I FV+ L + Sbjct: 120 SPIFEANKIPV-----KTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKS-LDENMI 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 174 KELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 234 KTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274 >gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] Length = 274 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/278 (33%), Positives = 140/278 (50%), Gaps = 14/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ RMK ++ T G +V D S+ V+M Sbjct: 61 RIFNADGSEVAQCGNGARCFARFV--RMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP D + + L R+ ++++ + VVSMGNPH + V D + + + Sbjct: 119 GEPNFDPQQV-LFRA-ARVEKTYIMRAAEQTVLCG---VVSMGNPHCVIAV-DSVDNAPV 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 173 ATLGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 233 QLAEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDG 270 >gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217] gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217] Length = 275 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDGS+ V+ Sbjct: 59 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+ D IP K+++ PV +SMGNPH + V DD+ Sbjct: 119 MGVPVTDPSNIPFKAK--KVEKTYLLQTPVQTFLCG---AISMGNPHCVIEV-DDIDTVA 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H FS+GVN+ ++ + + LR +ERG G T ACG+ ACA+ Sbjct: 173 VDEIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K +R V V + GG L I+W + ++MTG A+ ++G++ + Sbjct: 233 DKLSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275 >gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] Length = 276 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 22/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F KM+G+GN +VID ++T+ + ++ DQ++L+ VD Sbjct: 3 VAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + ++ +T G++ D ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDMGV 122 Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P IP + + D+ R IG VSMGNPH + V + Sbjct: 123 PRFAPDEIPFKADHEADSYLLEFDKQRVEIG-----------AVSMGNPHCVLRVAA-ID 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A +G +L +HP F + VN+ V S + LR +ERG G T ACG+ ACA++V Sbjct: 171 AAPIACWGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMVIG 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W + V+MTG A+ +EG +++ Sbjct: 231 RRRGWLSEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276 >gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] Length = 290 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 139/277 (50%), Gaps = 8/277 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN +V+D N+ S+ I A++ DQ++L+ + D RI N Sbjct: 1 MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL-- 125 DGSEV++CGNG RC V+F+ + R E G + N D +++VDMG P Sbjct: 61 DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120 Query: 126 -DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D SF ++ + P+++ + +VSM NPHA+ V D +Y ++S G Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIVPD-VYTAPVSSQG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F+ +N ++ S ++LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V M GG + I + D V M G A +EG +DI Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDI 275 >gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603] gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603] Length = 280 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 23/286 (8%) Query: 11 MEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M R I ++ ++ ++T D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVAPVK--MR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVD 119 + N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ +++ +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKID 116 Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L + IP L R+ F NH + VSMGNPHA+ FV DD+ Sbjct: 117 MGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 232 NGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 277 >gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] Length = 278 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 146/291 (50%), Gaps = 38/291 (13%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F+KM G+GN +VID RG CH +I A D ++L+ + Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLN 50 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107 A D +RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ V Sbjct: 51 SDIA--DIRMRIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFV 108 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + + V+MG+P K IP+ + + + N + + + MG PH Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRITS---LLMGVPHT 165 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I FV DD+ D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ Sbjct: 166 ILFV-DDVEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +CASV+AS T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 225 GSCASVIASNLNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGE 275 >gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208] Length = 284 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 19/277 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + + A+ S D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D I +V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVAV 123 Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L K +P L ++ + F G + VSMGNPH +F V D + Sbjct: 124 DMGEPRLTKKELPMLGNEEERTINETFVFGETE----LSGTAVSMGNPHIVFPVAD-ISQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + + NR ++V + GG L+I W DN HV MTG A+ Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAE 275 >gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] Length = 276 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVD 61 ++ F+KM G+GN +V+D G + +A D FDQ++L+ D +D Sbjct: 2 LIQFSKMHGLGNDFVVVD--GVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEVQ CGNG RC RF L + T+ G +V + + ++V+ Sbjct: 60 FHYRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IP F + ++ ++ V + VVSMGNPH + V + Sbjct: 120 MGVPEFEPAKIP----FRALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEVPS-VKDAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L F E +N+ V S ++LR +ERG G T ACG+ ACA+VV Sbjct: 174 VETLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V V + GG L I W+ + V+MTG A+ ++G++++ Sbjct: 234 EKLKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276 >gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 268 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +G ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603] gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603] Length = 276 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + + T +G +V + I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I LF VSMGNPH + V DD+ Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRTAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQI 274 >gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] Length = 280 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1] gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1] Length = 289 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 29/282 (10%) Query: 8 FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVD 61 F KM G+GN + ++M + C +T + ++ ++ N H D ++LI A V Sbjct: 11 FTKMHGLGNSYIYVNMFKEC---LTEEELSYIAKRVSNVHTGIGSDGLILICPSDVAPVK 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115 +RI N DGSE ++CGNG+RCV ++ ++ + F ET+ G++ A+ + + S Sbjct: 68 --MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFVEDGKVNS 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVE 172 + ++MG+P L IP+ D + P+ H + VSMGNPHA+F+V Sbjct: 126 VEINMGKPRLSRVEIPMIGKEDDIVVSE----PIEFEGHTYYMTG--VSMGNPHAVFYV- 178 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + + S G ++ K F EG+N+ V + L R WERG G+T ACG+ ACA+ Sbjct: 179 DQIEDAPVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGTGACAA 238 Query: 233 VVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 VVAS KT N V + GG L I W +N V M G A+ Sbjct: 239 VVASVLNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAE 280 >gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72] gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72] Length = 277 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 136/288 (47%), Gaps = 24/288 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G+GN +VID ++T + A++ + HF DQ++++ VD Sbjct: 3 IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIA---DRHFGVGCDQLLVVEPPGSDEVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ DG +SVD Sbjct: 60 FRYRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175 MG P L IP D V L L V VSMGNPHA+ V D + Sbjct: 120 MGVPELSPARIPFVSDSDAW---------VQPLQLAEDTVAITAVSMGNPHAVQVVAD-V 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A G + HP F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 170 DTAPVARQGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVA 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V+ GG L I W V MTG A +EG+L++ Sbjct: 230 GIGRGLLVSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277 >gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ] gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ] Length = 278 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 32/291 (10%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN + +D + DN AI + + D ++LI A D +R+ Sbjct: 3 FTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRMRM 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVD 119 N DGSE + CGNG+RCV ++ + + T ET GIL + EN+ + V+ Sbjct: 61 FNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVRVN 120 Query: 120 MGEPILDWKLIPL---------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 MG P L + IP+ A +D+ F I VSMGNPH I + Sbjct: 121 MGPPRLSREEIPMNGTPAAQVVAEELTVLDKT-FKI-----------TCVSMGNPHCIIY 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ ++ +A++G L+ H +F N+ ++ S + RTWERG G T ACG+ A Sbjct: 169 V-DDVDNFPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGAS 227 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A VA + T+R + + GG L +EW +N VFMTG A + + G++ + Sbjct: 228 AVCVAGVLNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278 >gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] Length = 305 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 29/300 (9%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN + +D + DN + AI+ D ++LI + A D F+ + Sbjct: 9 FTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA--DFFMEM 66 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG--ILVAKENRDGSIS---VD 119 N DGS+ Q CGNG+RCV +F+ + + T +T+ G IL K DG + V+ Sbjct: 67 YNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETARVN 126 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---------------VSMGN 164 MG PIL+ IP+ K + I + ++ P V VSMGN Sbjct: 127 MGAPILEAAQIPVDTKGLK-EYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTAVSMGN 185 Query: 165 PHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PHAI +++ D+ +++ G H F E +N +V +L++R WERG G T Sbjct: 186 PHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWERGSGET 245 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACG+ ACAS+VA+ + ++ +LGG L I W D N V++ G AK + G++DI Sbjct: 246 LACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVDI 305 >gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] Length = 276 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 142/281 (50%), Gaps = 15/281 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID N T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R VRF+T + +++ ET+ GI+ + +G I+VDMG PIL+ Sbjct: 61 DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120 Query: 128 KLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLA 181 + +P FD D + P++ N VVSMGNPHA+ V D + + Sbjct: 121 EDVP----FDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVAD-VEEAPVR 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 176 EDGVLIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V+ GG L+I W ++ V MTG A +EG+++I Sbjct: 236 LVSPVKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276 >gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241] gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241] Length = 239 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 14/228 (6%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 14 MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAK 73 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG P L IP L R+ F NH + VSMGNPHA+ FV DD+ Sbjct: 74 IDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVE 128 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 129 QAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVAS 188 Query: 237 GCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 189 ILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 236 >gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] Length = 261 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 11/236 (4%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103 FDQ++++ D +D RI N DGSEV CGNG RC RF L ++ + T Sbjct: 29 FDQMLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDISVSTQT 88 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSM 162 G ++ N D ++ V+MGEP D + +P F ++ +I H L VVSM Sbjct: 89 GRMILSVNEDETVCVNMGEPNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG--VVSM 142 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPH + V DD+ ++A G +L H F E N+ +V S E + LR +ERG G T Sbjct: 143 GNPHCVMQV-DDVSVANVALLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGET 201 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 ACGS ACA+V V V++ GG L I W H ++MTG A ++G Sbjct: 202 QACGSGACAAVAVGIQQELLGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 257 >gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] Length = 269 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 35/288 (12%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ +R AI + D ++LI A D + Sbjct: 5 IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G +++V Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P L+ I F PF+ VSMGNPH + FV DD+ Sbjct: 123 DMGVP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++ ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RTVNLSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5] Length = 284 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 145/294 (49%), Gaps = 37/294 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ C + D + HF D ++LI + A D Sbjct: 3 FTKMHGIGNDYVYVN---CFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS+ CGNG+RCV +++ + + S + T GI L ++ + + Sbjct: 58 MDMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 V+MG PIL K IP+ +++ D +H+ VSMGNPHAI + Sbjct: 118 VNMGSPILTAKEIPVVAETEQVIDAPITVDGKEYHM-----------TAVSMGNPHAIIY 166 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ DL G H F + VN +V ++ +R WERG G T ACG+ AC Sbjct: 167 V-DDVNSLDLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGAC 225 Query: 231 ASVVASGCLHKTN--RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A VAS K + + V+V++LGG L I W D N V+MTG A ++G++D+ Sbjct: 226 AVTVASILNDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279 >gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1] gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1] Length = 239 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 14/228 (6%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 14 MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAK 73 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG P L IP L R+ F NH + VSMGNPHA+ FV DD+ Sbjct: 74 IDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVE 128 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 129 QAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVAS 188 Query: 237 GCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 189 ILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 236 >gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688] gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688] Length = 277 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM+GIGN +VID ++T D I A+S + HF DQ++++ Sbjct: 4 LEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAIS---DRHFGVGCDQLLIVEHATTPEAA 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V+F+ + +++ ET RG++ + +G ++V+ Sbjct: 61 FRYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P +P F+ + + H + + SMGNPHA+ V D++ Sbjct: 121 MGPP----SFLPADLPFEAETIQSLYPLQLAHETVEV-AIASMGNPHAVQLV-DNVDTAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G + HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 175 VAEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V GG L I W ++ V+MTG A + G + + Sbjct: 235 GHLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277 >gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] Length = 276 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 16/279 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP F ++ +I V LF VSMGNPH + V DD+ + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG A ++G++ Sbjct: 236 LDEQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQI 274 >gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] Length = 289 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++++ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALA---DRHFGIGADQLLVVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+T R ++S + ++G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + +P A D + P++ R VSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AYPVLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW---HDNNHVF-MTGEAKKEWEGKLDI 281 + V+V GG L I W HD M G A +EG++++ Sbjct: 239 IRRGLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287 >gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 268 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ DG ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FVED + L + G +L H MF E VN+ + + E ++ R WERG Sbjct: 142 VSMGNPHAVIFVED-VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVA+ K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] Length = 280 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] Length = 274 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 131/283 (46%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P D + +P F +L+L VVSMGNPH + V D + Sbjct: 121 PNFDPQQVP------------FRANKAENLYLMRVAEQTIMCGVVSMGNPHCVLQV-DSV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G +L H F E VN+ V S E + LR +ERG G T ACGS ACA+V Sbjct: 168 KTAAVESLGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W H ++MTG A ++G Sbjct: 228 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDG 270 >gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] Length = 276 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 141/290 (48%), Gaps = 28/290 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G GN +V+D+ + I L+ DQ++++ VD Sbjct: 2 LLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ + ET GI+ + + + VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDMG 121 Query: 122 EPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 PIL+ + IP A S+ +++ + IG +SMGNPH++ V DD+ Sbjct: 122 APILEPQKIPFDAPEEATSYPLQVEENVLEIG-----------ALSMGNPHSVCRV-DDV 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV- 234 ++ G L+ HP F + N ++ S + LR +ERGVG T ACG+ ACA+VV Sbjct: 170 DSINIEHLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVY 229 Query: 235 --ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + G L T V+V + GG L I W V MTG +EG + I Sbjct: 230 GLSRGWLRDT---VTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276 >gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 143/293 (48%), Gaps = 22/293 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ N HF DQI+ + VD Sbjct: 7 IRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLA---NRHFGVGADQILTVRPAPSEGVD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC R++ R + +T+ G++ + + +G ++VD Sbjct: 64 FEYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRVTVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171 MG P LD +P S + + + L L P VSMGNPHA+ V Sbjct: 124 MGAPQLDPVKVPF--STEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQLV 181 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + G L+ H F + VN ++ + ++LR +ERG G T ACG+ ACA Sbjct: 182 -DDVNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGACA 240 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 +VVA ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293 >gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] Length = 287 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D N++ + AL+ + HF DQ++L+ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALA---DRHFGVGADQLLLVEKPTVEGVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + ++S + +G + +G + VD Sbjct: 60 FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + + +P A + R+ + P++ + R VVSMGNPHA+ V DD+ Sbjct: 120 MGAPVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W ++ + M G A ++G++++ Sbjct: 239 RRGLLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIEL 285 >gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] Length = 290 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 14/285 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + S F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 12 LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117 D RI N DGSEV+ CGNG RC RF+ + +T T +G +V + I+ Sbjct: 72 SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG P + IP F ++ +I V LF VSMGNPH + V DD+ Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDI 183 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 184 RTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAV 243 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 244 GILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288 >gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5] Length = 124 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/123 (56%), Positives = 91/123 (73%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121 Query: 123 PIL 125 P+ Sbjct: 122 PVF 124 >gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] Length = 287 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 139/288 (48%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V++ N+T + L+ DQI+L+ + VD Sbjct: 3 LKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R +F+T ++ ET GI+ +DGS++VDMG Sbjct: 63 RIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDMGN 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-------PF-VVSMGNPHAIFFVEDD 174 P+ + IP + D + +L L P VVSMGNPHA+ V DD Sbjct: 123 PVFETSRIPFLTK--GLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ H F E VN + S+ LR +ERG T ACG+ ACA+VV Sbjct: 180 VNRAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + V+VK GG L I W H V M+G A + G++++ Sbjct: 240 SGIRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287 >gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] Length = 282 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 149/282 (52%), Gaps = 9/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN +VID H + + I + FDQ++L+ + Sbjct: 2 AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + + T +G++V +G ++VDM Sbjct: 62 GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L IP + + + +H ++ R V+MGNPHA+ V DD++ + Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASARFS-CVNMGNPHAVLVV-DDVHCAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---SG 237 A +G L +HP F E VN+ +V + LR +ERG G T ACG+ ACA+ VA +G Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + AV V + GG L IEW +NHV M+G A +EG + Sbjct: 240 LLARQG-AVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTV 280 >gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] Length = 276 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP F ++ +I V LF VSMGNPH + V DD+ + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 236 LDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274 >gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4] Length = 276 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP F ++ +I V LF VSMGNPH + V DD+ + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 236 LDEQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274 >gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073] gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1] Length = 275 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K+++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] Length = 278 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ C + + HF D ++LI Q A D Sbjct: 3 FTKMHGIGNDYVYVN---CFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS+ CGNG+RCV +++ + + + T GI L + + + Sbjct: 58 MDMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL+ IP+ + + + F VSMGNPHA+ ++ DD+ + Sbjct: 118 VNMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYL-DDVDN 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G KHP+F + VN +V ++L +R WERG G T ACG+ ACA V+S Sbjct: 173 LDIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + T V+VK+LGG L I W N V+MTG A ++G++ + Sbjct: 233 LNNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITL 277 >gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6] gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6] Length = 282 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 17/284 (5%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR 65 M G GN +V+D +T + AL+ N HF DQ++L+ D R Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGADFKYR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P Sbjct: 58 IFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAP 117 Query: 124 ILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P A D R + P++ R VSMGNPHA+ V DD+ Y + Sbjct: 118 VFAPAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVL 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 177 EEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 237 LDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 280 >gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385] gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385] Length = 290 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 10/283 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + S F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 12 LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117 D RI N DGSEV+ CGNG RC RF+ + +T T +G +V + I+ Sbjct: 72 SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P + IP K + + H VSMGNPH + V DD+ Sbjct: 132 VNMGVPEFEPNKIPFRA---KQSEKTYILRAGEHTLFCG--AVSMGNPHVVTVV-DDIRT 185 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288 >gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70] gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70] Length = 284 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 153/279 (54%), Gaps = 23/279 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + ++M + I +++L+ ++ NT D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVNM--FEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116 +RI N DGSE ++CGNG+RCV ++ +K +SF ET+ G++ A+ + ++ Sbjct: 63 -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNV 121 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMG+P L IP+ +++ + F + + VSMGNPH IF+V DD+ Sbjct: 122 TIDMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEIT----AVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVA Sbjct: 177 TTAPVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 S KT N+ V + GG L+I W D +V MTG A+ Sbjct: 237 SVLNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAE 275 >gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 278 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 139/279 (49%), Gaps = 8/279 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN V+D + I L + FDQ++++ +D Sbjct: 2 LLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N +GSEV+ CGNG RC +F+ + + ET +G + DG ++VDMG Sbjct: 62 YRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +P + + D ++ + L VS+GNPHA+ V D L ++ Sbjct: 122 APSFAPADLPFDATEKQDDLYTLNLEGYGSVELTP---VSVGNPHAVIRV-DRLTDEIVS 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L+ H F VN+ V S + ++LR +ER VG T ACG+ CA++VA Sbjct: 178 TVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQGW 237 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 N V+ +LGG L IEW + + + MTG A K +EG++ Sbjct: 238 LNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQI 276 >gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] Length = 278 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 24/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + ++ C + + + HF D ++ IH A D Sbjct: 3 FTKMHGCGNDYVYVN---CFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DG+E CGNG+RC+ +++ + + T ET GI L ++ + ++ Sbjct: 58 MAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVN 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDL 175 VDM P+L+ IP+ +K D+ I + VSMGNPH + FV+ DDL Sbjct: 118 VDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGREYRIT---CVSMGNPHGVVFVDSVDDL 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ G + HPMF + VN +V ++ +R WERG G T ACG+ ACAS A Sbjct: 175 ---DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYA 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 S KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 232 SYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278 >gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451] gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451] Length = 276 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + + T +G +V + I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I LF VSMGNPH + V DD+ Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRTAA 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQI 274 >gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] Length = 284 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 149/289 (51%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN ++++ D S L HF D ++++ + D Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLC---RRHFSIGADGLIIVLPPESVEHD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---VAKENRDGS- 115 +RI N DGSE + CGNG+RC +L + R ET+ GI+ + N D S Sbjct: 60 FRMRIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSL 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG P + IP+ D++D + + + L N VSMGNPH I FVED + Sbjct: 120 IKVNMGRPHFKSEEIPVNIE-DELDYVKNFPLKIGNKKL-NINCVSMGNPHTIIFVED-V 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++++G + +P+F + N+ ++ S + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 NQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + + VFMTG A+ + GK+ I+ G Sbjct: 237 GIKNGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284 >gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555] gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016] gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555] gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 274 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 22/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +VID R + N HF D ++++ + AS+ Sbjct: 3 FTKMHGTGNDFIVIDDR--ENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASIK-- 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K K ET GI + K + I+ Sbjct: 59 MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG P + +P+ + ++++ I N++ + MG PH + F L Sbjct: 119 IDMGMPSFAPRKVPVEFKEEVIEKE-VKIKNKNYIIT----TLFMGVPHTVIF--GKLED 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+A G + K+P+F++G N++ + + + + ++TWERG G T ACG+ +CA VVA+ Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T + V V + GG LL+E D+N VFMTG A ++G+ DI Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274 >gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] Length = 277 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 148/286 (51%), Gaps = 24/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V++ + + D + D HF D ++++ D Sbjct: 3 FTKMTGLGNDFIVLENLE-NKELEYDVLARKLCD--RHFGIGGDGLLIVE--PSGIADIK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RIIN DGSE + CGNG RC +++ + + + ET+ GI L+ + + + Sbjct: 58 MRIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDDL 175 V MG PI LIP+ K D+++F I + R V S+ G PH + FV D + Sbjct: 118 VYMGNPIFRPDLIPV-----KTDKNQF-IEETIKIDGRAYTVTSLLIGVPHTVIFV-DSI 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VA Sbjct: 171 DENMIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVA 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S +T R V V G L IEW +N++++TG+A+K + G +DI Sbjct: 231 SALTDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276 >gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617] Length = 282 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G ++ +D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + IP F +++L VVSMGNPH + V D++ Sbjct: 129 PNFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQV-DNV 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 176 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W H +FMTG A ++G Sbjct: 236 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 278 >gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223] gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223] Length = 290 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + + I L+ FDQ++++ D D RI Sbjct: 19 FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 78 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + + T +G +V + I+V+MG Sbjct: 79 FNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGV 136 Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I LF VSMGNPH + V DD+ + Sbjct: 137 PEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRAAAV 188 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V Sbjct: 189 ETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQG 248 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G++ Sbjct: 249 LLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 288 >gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] Length = 276 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I N LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDNTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG ++G+L Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299] gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299] Length = 331 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 26/294 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV----DAF 63 F K +G+GN +++D R + S A D N +I V D Sbjct: 44 FYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDYS 103 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ N DG+E + CGNG+RC+ F+ K++ T+ G++ + DG +SVDMG Sbjct: 104 MRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDMG 163 Query: 122 EPILDWKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 EP LD +P +F+ R + + L VSMGNPH + F ++ Sbjct: 164 EPTLDPPKVPC--TFEATQDGAAVRAKMEVDGETWLVT----AVSMGNPHCVTFGKEGEC 217 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + + L+ +G + KHP F N V + + + WERG G T ACG+ Sbjct: 218 DEEGIKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTG 277 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ +T R +V++ GG L IEW + +N V MTG A+ ++G + + Sbjct: 278 ACATVVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331 >gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis] Length = 375 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 143/290 (49%), Gaps = 19/290 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDAS 59 + ++ F K G+GN +++D R + S AI + D ++ + + Sbjct: 87 KKDVLHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVNGT 146 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC+ F L + + +S+ T G++V K DG + Sbjct: 147 -DYSMRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKV 205 Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMG+PIL IP R + + + +++ VSMGNPH + F Sbjct: 206 MVDMGQPILTAANIPTKLPKREDGAVVKAELPVD--GKIWIVT--CVSMGNPHCVTFSRK 261 Query: 174 DLYHYDLASF-----GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D D+ S G L H MF N ++ S L +R WERG G T ACG+ Sbjct: 262 DCEVLDVNSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAG 321 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ACA VVA+ ++ R V + GG L IEW++ +NHV+MTG A+K + G Sbjct: 322 ACALVVAAVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371 >gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] Length = 278 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 141/285 (49%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G+GN +VID G ++ D D HF DQI+L+ D + Sbjct: 3 LEFTKMHGLGNDFVVID--GTRQDVRLDEATLRQLADR-HFGIGCDQILLVEPPGDPTQA 59 Query: 62 AF-IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 F RI N DGSEV+ CGNG RC RF+ + + + ET+ G +V D + V Sbjct: 60 LFRYRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P+ + IPL + D + + H VSMGNPHA+ V DD+ Sbjct: 120 NMGQPVFTPEQIPLVAEHEA---DAYTLDVQGHAITLG--AVSMGNPHAVLLV-DDVASA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F VN+ A + +DLR +ERGVG T ACGS A A++ Sbjct: 174 PVTEVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRR 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDI 281 + + V V + GG L++ W+ V++TG A + G +D+ Sbjct: 234 RNLVDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278 >gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881] gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881] Length = 282 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 14/282 (4%) Query: 8 FAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 F KM G+GN +VID + + +D I L + FDQ++++ + A D Sbjct: 5 FTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSADAD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI+N DGSEV CGNG RC RF+ + ++ ET G + D ++VD Sbjct: 65 FRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVTVD 124 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P IP+ K + D + + V+ V +GNPH VE+ + + Sbjct: 125 MGAPRWAPDAIPMTA---KAEADSYFL--VSGTQAWEVGAVGLGNPHCTLLVEN-VDNAP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + S G LL H F E VN+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 179 VESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQRR 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + AV+V + GG L + + + MTG A ++G ++I Sbjct: 239 GWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280 >gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 246 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 30/236 (12%) Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDG 114 D +RI N DGSE + CGNG+RC+ FL SR K ++ T+ G++ + DG Sbjct: 25 TDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQLTPDG 83 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGN 164 I VDMG P L IP +G + + P VSMGN Sbjct: 84 QIKVDMGLPRLLAGEIPTT------------LGAADGKVINQPLEVEGQTWEVTCVSMGN 131 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH I FVED + L G HP F + N +V S + L +R WERG G+T A Sbjct: 132 PHCITFVED-VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLA 190 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CG+ ACAS+VA+ +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 191 CGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 246 >gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] Length = 268 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ +DG ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + + ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVA+ K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 141/293 (48%), Gaps = 22/293 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ N HF DQI+ + VD Sbjct: 7 IRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLA---NRHFGVGADQILTVRPAPAEGVD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G ++VD Sbjct: 64 FEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171 MG P LD +P D + + L L P VSMGNPHA+ V Sbjct: 124 MGAPQLDPAKVPFTN--DGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV 181 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + G L+ H F + VN ++ + + LR +ERG G T ACG+ ACA Sbjct: 182 -DDVDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGACA 240 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDIK 282 +VVA ++ V V GG L IEW H V MTG A+ +EG++DI Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] Length = 287 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/287 (31%), Positives = 144/287 (50%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D N+T + AL+ + HF DQ++L+ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVDGVD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + ++S + +G + +G + VD Sbjct: 60 FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119 Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + + +P A + + + P++ + R VVSMGNPHA+ V DD+ Sbjct: 120 MGLPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281 + V V GG L I W N + M G A ++G++++ Sbjct: 239 RRGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285 >gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43] Length = 289 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ R S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P S + R D PVN R VVSMGNPHA+ V+D Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIVDDAK 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 LA G + +HP F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AAPVLAD-GPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289 >gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44] gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 142/293 (48%), Gaps = 22/293 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ N HF DQI+ + VD Sbjct: 7 IRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLA---NRHFGVGADQILTVRPAPAEGVD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G ++VD Sbjct: 64 FEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171 MG P LD +P + D + + L L P VSMGNPHA+ V Sbjct: 124 MGAPQLDPAKVPF--TTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV 181 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + G L+ H F + VN ++ + + LR +ERG G T ACG+ ACA Sbjct: 182 -DDVDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGACA 240 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDIK 282 +VVA ++ V V GG L IEW H V MTG A+ +EG++DI Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 268 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ G Sbjct: 28 DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85 Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ DG ++ +DMG P L IP L R+ F NH + Sbjct: 86 IVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + + ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVA+ K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli] gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli] Length = 276 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 13/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 +F KM +GN +++D ++ I + FDQ++LI + S + Sbjct: 3 TEFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQSKHFYY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123 RI N +G+EV CGNG CV R+L + + K+ T+ L G ++ ++G P Sbjct: 63 RIFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTANLGLP 122 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I D + IP ++ + I P+ F R + V+S+GNPH + V + L L Sbjct: 123 IFDPEKIPF------INPSKAPIHPLETPFGRFDCCVLSLGNPHCVIQV-NCLEKAPLED 175 Query: 183 FGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +HP F +G NL + ++ + +DLR +ERGVG T ACGS ACA+V+A L+ Sbjct: 176 LGLYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIAGRLLN 235 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + V V + GG L + W +++ VF+ G + G +D Sbjct: 236 RLTKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276 >gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3] Length = 284 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/276 (35%), Positives = 145/276 (52%), Gaps = 17/276 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + + A+ S D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D I +V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVAV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP L K +P+ + D+ + + L + VSMGNPH +F V D + Sbjct: 124 DMGEPRLTKKELPMLGNEDERTINETFVFGETEL---SGTAVSMGNPHIVFPVAD-ISQA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 180 PLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASVL 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + + NR ++V + GG L+I W DN HV MTG A+ Sbjct: 240 NGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAE 275 >gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163] Length = 274 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + IP F +++L VVSMGNPH + V D++ Sbjct: 121 PNFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQV-DNV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W H +FMTG A ++G Sbjct: 228 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 270 >gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] Length = 276 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I N LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDNTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG ++G+L Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] Length = 285 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 134/283 (47%), Gaps = 19/283 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M G GN +V+D + T + A++ + HF DQ++L+ VD RI Sbjct: 1 MHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFRYRI 57 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG P+ Sbjct: 58 FNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPV 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLYHYD 179 + +P D + R H N VSMGNPHA+ V DD + Sbjct: 118 FEAARLPFVP--DGLP-TRVEGADTQHALQINGRTEWLSTVSMGNPHAVQVV-DDAEAFP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 174 VLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRR 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG LD+ Sbjct: 234 GLLDSPVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDL 276 >gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703] gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703] Length = 274 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F ++ +I V + VVSMGNPH + VE ++ + + Sbjct: 121 PNFEPQQVP----FRAAKSEKTYILRVAERTVMC-GVVSMGNPHCVIQVE-NVDTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ + ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V+V++ GG L I W N +FMTG A ++G Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDG 270 >gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676] gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676] Length = 280 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] Length = 272 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 137/283 (48%), Gaps = 37/283 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDAS 59 MV F KMEG GN + ++ + + + + AL+ + HF D +++I + Sbjct: 1 MVRFTKMEGAGNDYIYVN--NLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD---- 113 D R+ N DGSE + CGNGMRC R+ R R+ +T G +V + D Sbjct: 59 YDFRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGS 118 Query: 114 -GSISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + VD+G P + D ++ R + PV VV G PH + F Sbjct: 119 FAGVRVDLGPPRILGDRRIAAEGREY-----------PVT--------VVDTGVPHIVIF 159 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ DLA G L +HP F VN++ A L RTWERG GLT ACG+ A Sbjct: 160 V-DDVDAVDLAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGAS 218 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAK 272 A +VA+ +T RA V+M GG L +EW + HVF+TG A+ Sbjct: 219 AVLVAACLKGRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAE 261 >gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 280 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] Length = 290 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 8/236 (3%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 +I+ D +RI N DGSE + CGNG+RC +F+ ++ + + SF+ ET GIL Sbjct: 49 IIYVLPSLDADFKMRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFP 108 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHA 167 + ++G++ VDMG P L+ IP+ K+ D +I N + N VSMGNPH Sbjct: 109 EILKNGNVCVDMGIPNLNSDDIPVKGFSKKVVIDELLNISHENTAYRIN--CVSMGNPHC 166 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + F D + ++ + G+++ H F + N+ + S L ++ WERG G+T ACG+ Sbjct: 167 VIFT-DKIDSINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGT 225 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 +CA+VVA+ + N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 226 GSCAAVVAATLNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEV 281 >gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 274 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VI+ +N+ + A D HF D ++++ D Sbjct: 3 FTKMHGLGNDFIVIE---ALENVDYSELAAKLCD--RHFGIGADGLLVVE--PSGIADIR 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117 +RI N DGSE + CGNG RC +++ R +K++ ET+ G+++ K + S+ Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVK 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174 V MG PI + IP+ K D+ +F PV ++ + +G PH I FVE Sbjct: 116 VYMGNPIFETSKIPI-----KTDKQKFINEPVKIDGKVYKLTS--IRVGVPHTIVFVES- 167 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L + G+ + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS V Sbjct: 168 LDENMIKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAV 227 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS L KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 228 ASAVLGKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4] Length = 277 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +++ + + + A ++ D HF D ++ I A D Sbjct: 3 FTKMHGCGNDYVYVNLF--EEKVENPAEVSIKVSDR-HFGIGSDGLITIGPSDKA--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSIS 117 + I N DGSE + CGNG+RCV +++ T ET G IL + + + Sbjct: 58 MHIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPI IP+ DK+ + +G N VSMGNPHA+ FV DD Sbjct: 118 VDMGEPIHTPAEIPVVADGDKVIDEPIEVGGKT----WNMTCVSMGNPHAVVFV-DDTAS 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L ++G L H F + N ++ S ++R WERG T ACG+ CA V+A Sbjct: 173 FPLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 KT V V + GG L IE+ ++NHVFMTG A + + G++++ Sbjct: 233 LNGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277 >gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1] Length = 274 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ V + VSMGNPH + V DD+ ++A Sbjct: 121 PIWEPNKIPF--TANKFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DDIETANVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274 >gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] Length = 283 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 141/284 (49%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K EG+GN ++ID R + + S A D HF D ++ + + + D Sbjct: 8 LSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCD--RHFGVGADGVIFLLSAETGA-D 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE Q CGNG+RC+ F L + ET G+L DG + V Sbjct: 65 FRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRV 124 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P L IP LA + K +G V+ V+MGNPHA+ FV D+L Sbjct: 125 DMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVT----CVNMGNPHAVVFV-DELA 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG L + F E VN A V S L ++ WERG G T ACG+ ACA +VA+ Sbjct: 180 TVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAA 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ++ +V++ GG + I W NH+ MTG A+K + G L Sbjct: 240 VLNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL 283 >gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017] Length = 275 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas arsenicoxydans] Length = 283 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 15/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +VID + T L+ DQ++++ Q A VD Sbjct: 3 IKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDMG Sbjct: 63 RIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGA 122 Query: 123 PILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 PIL + +P L ++ I H V+SMGNPHA+ V D Sbjct: 123 PILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWI----SVLSMGNPHAVQVVA-DAD 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 H + G L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 178 HAPVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+ GG L I W DN+ V +TG A +EG++++ Sbjct: 238 IRRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283 >gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] Length = 282 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 17/284 (5%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR 65 M G GN +V+D +T + AL+ N HF DQ++L+ D R Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGADFKYR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P Sbjct: 58 IFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAP 117 Query: 124 ILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P A D R + P++ R VSMGNPHA+ V DD+ Y + Sbjct: 118 VFAPAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVL 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 177 EEGPLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 237 LDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 280 >gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 267 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 88/278 (31%), Positives = 132/278 (47%), Gaps = 20/278 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASV 60 ++ F KM G+ ++ID RG D IT+ L N H F+Q+ +++D ++A+ Sbjct: 2 LLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLG---NRHTGIGFNQLAVVYDCEEAA- 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A I N +G+ + +CG+ R V L + S T RG+L +SVDM Sbjct: 58 -ARISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L+W +PL+ + D + PV +P SMGNPH FFV DD+ D+ Sbjct: 117 GEPSLEWTAVPLSDAMDTLTL------PVEG----SPAACSMGNPHCTFFV-DDIAAVDV 165 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L HP+F N+ +V + LR WERG G+ GS C +VV Sbjct: 166 AGLGPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRG 225 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + V V+ GG + ++W V +TG + +G Sbjct: 226 LLDATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGS 263 >gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] Length = 298 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 139/301 (46%), Gaps = 38/301 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDA 58 +Q +DF K G+GN +++D R S DAI + D ++ Sbjct: 7 LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQG 66 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RF L ++ +S+ T+ G ++ + DG Sbjct: 67 -CDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV----------SMG 163 ++VDMG P L +P PVN ++ P VV SMG Sbjct: 126 VAVDMGPPTLKGAEVPTKL-------------PVNADGAVVKQPLVVDGKTWLVTCVSMG 172 Query: 164 NPHAIFFVEDD------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 NPH + F E D + L G L H +F N +V S L +R WER Sbjct: 173 NPHCVTFGEQDAKGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWER 232 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWE 276 G G T ACG+ ACA VVA+ + R V + GG L IEW + NNHV+MTG AK + Sbjct: 233 GAGPTLACGTGACAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFS 292 Query: 277 G 277 G Sbjct: 293 G 293 >gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586] gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586] Length = 274 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VVSMGNPH + V D++ + Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--VVSMGNPHCVLQV-DNVDTAPVEE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H +FMTG A ++G Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDG 270 >gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] Length = 276 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 139/280 (49%), Gaps = 14/280 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ + FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DG+EV+ CGNG RC RF+ RMK R + T +G + K D I+V+MGE Sbjct: 65 FNSDGTEVEQCGNGARCFARFV--RMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + + ++ LF VSMGNPH + V DD+ +YD+ Sbjct: 123 PQFEPNKIPFKAT--QAEKTYLLRAEDKTLFCG---AVSMGNPHCVT-VVDDVDNYDVDK 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G L+ H F E VN + S + LR +ERG G T ACGS ACA+V Sbjct: 177 YGPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 237 EEDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] Length = 280 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 151/285 (52%), Gaps = 26/285 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F KMEGIGN + ID G H ++ + + ++ + HF D +++I Q++ + Sbjct: 1 MLKFTKMEGIGNDYIYID--GIHQDVPMNP-HFITKISDRHFGIGSDGVIVI---QESEI 54 Query: 61 DAF-IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRD 113 F +R+ N DGSE + CGNG+RC +F+ K+ ET+ GI L+ N+ Sbjct: 55 CDFKMRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKV 114 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V+MG+PIL K IP ++M + + G V +L +SMGNPH + ++ Sbjct: 115 QYVRVNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLT-----SLSMGNPHTVIYM- 168 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + +++ G KH +F E VN V + + L +R WERG G T ACG+ ACA Sbjct: 169 -NHLDFNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAV 227 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + AS + V V++LGG L I + +N ++M+G A +EG Sbjct: 228 MYASYINGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEG 271 >gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206] gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3] gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206] Length = 275 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K+++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] Length = 280 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 143/274 (52%), Gaps = 19/274 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272 K R ++V + GG L+I W + +V M G A+ Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAE 267 >gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2] gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2] Length = 275 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTATVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271 >gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004] gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038] gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 274 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/277 (34%), Positives = 142/277 (51%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + +P + K ++ + + H L VVSMGNPH + V DD+ ++A Sbjct: 120 EPDFEPQTVPFRAA--KAEKT-YILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V++ GG L I W H ++MTG A ++G Sbjct: 234 LNENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDG 270 >gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] Length = 286 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 141/281 (50%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 F K G GN ++ID R + S+ I + + F D ++ I + + + Sbjct: 6 FEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILE-PNGNNH 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117 A + I N DGSE Q CGNG+RC+V++L + K + ET G+ +A+ N DG IS Sbjct: 65 ARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYN-DGQIS 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+PI+D K IP + F N F + V MGNPH IFFVED + Sbjct: 124 VKMGKPIIDIKSIPTNIDKKQNFLPAFLFKESN--FEYEGYAVGMGNPHLIFFVED-ITK 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L+ G + H +F E N+ +++ + +++ + WERG G T ACG+ ACA VA+ Sbjct: 181 ISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVAAF 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 L N + + GG L I W + M+G AKK + G Sbjct: 241 NLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSG 281 >gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 274 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 18/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D+ + ++ I L+ FDQ++ + D +D Sbjct: 1 MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS------FTFETIRGILVAKENRDGSISV 118 RI N DGSEV CGNG RC+ F+ RMK+ + + +T R +L EN + V Sbjct: 61 RIFNADGSEVTQCGNGARCLAHFV--RMKKLTNKREIYISTQTSRMVLTIIENN--MVRV 116 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P + IP ++++ N++F +VS+GNPH I V +++ Sbjct: 117 NMGVPKFELPQIPF--DMHQIEKKEILYLAKNYIFGG---IVSIGNPHCIMIV-NNVDSA 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G +L H FSE N+ +V + E + LR +ERGVG T ACGS ACA+V Sbjct: 171 QVSIIGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIR 230 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 L V V + GG L+I W ++MTG A ++G ++ Sbjct: 231 LGLLAEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273 >gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905] Length = 274 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia stuttgartiensis] Length = 277 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 144/290 (49%), Gaps = 26/290 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ C + D + + HF D ++LI + A D Sbjct: 3 FTKMHGIGNDYVYVN---CFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--DCK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE Q CGNG+RCV +++ + +++ T ET+ GI L K R S Sbjct: 58 MRIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCSAR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L IP+ + ++ D + N F VSMGNPH + FV DDL Sbjct: 118 VNMGRPKLMRPEIPMVGAETQV-VDEMLVLNENTSFRVT--CVSMGNPHCVIFV-DDLKQ 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + H +F E N+ +V + + TWERG G+T ACG+ A A VA Sbjct: 174 LHIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 + T R + + GG L +EW ++ +V+MTG A ++ TG+W+ Sbjct: 234 LNNLTERKLLAHLPGGDLELEWVEDENVYMTGAAA-------EVFTGEWL 276 >gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] Length = 283 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 147/290 (50%), Gaps = 24/290 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 + ++ F KM G GN + +D G + ++ + +AL T + D ++LI + Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE-WSALHTGIGS--DGLVLIG--RSG 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 D +RI N DGSE + CGN RC+ ++L + T +T+ GI L ++N+ Sbjct: 57 KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNK 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 +++VDMG P + +D + P+ +R VSMGNPH + FV Sbjct: 117 VDTVTVDMGIPACE------PTCYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV 170 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D+ DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA Sbjct: 171 -NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACA 229 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + VA+ ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 230 TAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 288 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 16/281 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 S + F KM+G+GN +V D ++ + + ++ + HF DQI+L+ Sbjct: 2 SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIA---DRHFGIGCDQILLVEAAASPD 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSF-TFETIRGILVAKENRDGSIS 117 D RI N DG+EV CGNG RC F+ +++ K T ET G L+ +G+I+ Sbjct: 59 CDFRYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P +L+P F + ++ LR V MGNPHA+ V Sbjct: 119 VHMGVP----RLVPADVPFRADEESPEYLLSAGKHTLRI-AAVGMGNPHAVLRVAS-AAE 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A+ G + HP F E N+ + + LR WERG G T ACGS ACA+VVA Sbjct: 173 APVATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + + AV+V + GG L IEW H V MTG A+ ++G Sbjct: 233 RWDELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDG 273 >gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 277 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 147/290 (50%), Gaps = 35/290 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ + + S + A D HF D ++LI + A D Sbjct: 3 FTKMQGLGNDYVYVNCL--KEKVESPSEMARRVSDR-HFGVGSDGLILICPSECA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +++ N DGS + CGNG+RCV +++ + + ET+ GI L +E + + Sbjct: 58 MKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVK 117 Query: 118 VDMGEPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 VDMG PI + IP+ D +D D + + +SMGNPHA+ + Sbjct: 118 VDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM-----------TCISMGNPHAVVY 166 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + DD+ + ++ G HP F VN A V E++++R WERG G T ACG+ AC Sbjct: 167 L-DDIQNMEIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGAC 225 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 A VAS T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 226 AVAVASMVNGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275 >gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] Length = 292 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 36/300 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +T L+ + HF DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLA---DRHFGVGADQILTVRPSPAEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC R++ + + + +T+ G++ + DG ++VD Sbjct: 60 FEYVIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPF--------------VVSMGN 164 MG P D +P D + PV L + P VVSMGN Sbjct: 120 MGRPEFDAARVPF---------DAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGN 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ V+ D+ +A G L+ HP F VN ++ + LR +ERG G T A Sbjct: 171 PHAVQLVQ-DVDTAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLA 229 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282 CG+ ACA+V A L + V V+ GG L I W + + VFMTG A ++G++++ Sbjct: 230 CGTGACAAVAAGIRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289 >gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 297 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 16/281 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 S + F KM+G+GN +V D ++ + + ++ + HF DQI+L+ Sbjct: 11 SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIA---DRHFGIGCDQILLVEAAASPD 67 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSF-TFETIRGILVAKENRDGSIS 117 D RI N DG+EV CGNG RC F+ +++ K T ET G L+ +G+I+ Sbjct: 68 CDFRYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNIT 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P +L+P F + ++ LR V MGNPHA+ V Sbjct: 128 VHMGVP----RLVPADVPFRADEESPEYLLSAGKHTLRI-AAVGMGNPHAVLRVAS-AAE 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A+ G + HP F E N+ + + LR WERG G T ACGS ACA+VVA Sbjct: 182 APVATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGI 241 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + + AV+V + GG L IEW H V MTG A+ ++G Sbjct: 242 RWDELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDG 282 >gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] Length = 274 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + IP F +++L VVSMGNPH + V D++ Sbjct: 121 PNFEPQQIP------------FRANKAENIYLMRAAEQTVMCGVVSMGNPHCVLQV-DNV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W H ++MTG A ++G Sbjct: 228 GIQQASLAEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDG 270 >gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895] gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895] Length = 275 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNIDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271 >gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] Length = 276 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 144/281 (51%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVYFSQELIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + S + T +G ++ D I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F +++ +I V LF VSMGNPH + V DD+ + Sbjct: 122 VPEFEPNKIP----FRAKQKEKTYIMRVGEKTLFCG---AVSMGNPHVVT-VVDDVDSAE 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+V + GG L I W ++MTG A ++G+L Sbjct: 234 GLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274 >gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/162 (49%), Positives = 99/162 (61%) Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D Sbjct: 2 VYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDT 61 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YDL G LL HP+F E N+SIA+VT +++ LR WERG GLT ACG+AACA+ VA+ Sbjct: 62 YDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAAS 121 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L R+ + + GG L IEW ++HV MTG E EG Sbjct: 122 RLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSF 163 >gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 264 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 141/269 (52%), Gaps = 21/269 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G GN ++ID R ++ N D DQ+++I + + F+ Sbjct: 9 IPFVKMHGTGNSFVIIDSRSANN----LDWNYRQIADQGSCDQVIIIT--MSNAANCFMH 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-ILVAKENRDGSISVDMGEPI 124 I N DGS + CGN RCV + + T E I IL + D SI V+MG+P+ Sbjct: 63 IYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPL 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPL+ D + P+ L+ P V++GNPH +FFV D++ L + G Sbjct: 123 LKWNEIPLSCECDPLYL------PIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHK 241 L H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS CL Sbjct: 176 PKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCL-- 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 + SV + GG LLIEW N + MTG+ Sbjct: 234 ATKQTSVHLPGGHLLIEWSKN--ILMTGD 260 >gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] Length = 242 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 13/226 (5%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGI 105 DQ+++I + A D F+ I N DGS+ + CGN RCV L S + T E + + I Sbjct: 24 DQVIVITNSSLA--DCFMHIYNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRI 81 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 L + D SI V+MG+P+L W IPL+ + D H+ P+ L++P V++GNP Sbjct: 82 LECFKVGDKSIKVNMGKPLLKWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNP 135 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H +FFV D + L S G L H +F + +N+SIA+V + LR WERG G+TA+C Sbjct: 136 HIVFFV-DSVNEIPLQSLGPKLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASC 194 Query: 226 GSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 GSAACA++V S + T + SV + GG LLIEW +N VFMTG+ Sbjct: 195 GSAACAALVTSTLRGYLTVQQTSVNLPGGKLLIEWANN--VFMTGD 238 >gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] Length = 278 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 148/290 (51%), Gaps = 30/290 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 + F+KM G+GN +V+D G N+ S + D +T FDQ++L+ D +D Sbjct: 5 LQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 RI N DGSEV CGNG RC RF LT++ K K T ++ R L EN D + Sbjct: 63 HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMTLTINENDD--VC 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDL 175 V+MGEP + + +P F + ++ +I R F VVSMGNPH + V D++ Sbjct: 120 VNMGEPDFEPQNVP----FRAVKAEKTYIIRAQE---RTVFAGVVSMGNPHCVVQV-DNV 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233 ++ G L H F E N+ V S + + LR +ERG G T ACGS ACA+V Sbjct: 172 QTAEVEVLGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAV 231 Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V G L NR V V + GG L I W + ++MTG A ++G + I Sbjct: 232 GVGQGLL--ANR-VRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278 >gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2] gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2] Length = 283 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 143/291 (49%), Gaps = 25/291 (8%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KMEG+GN +++D R + + +I + D Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETADVG 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116 +I N DGSE + CGNGMRC + + + + ++ FT ET+ G IL++ + +I Sbjct: 63 FKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVEAI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFV----VSMGNPHAIFFV 171 VDMGEPIL+ IP K +R R VN + ++ V VSMGNPHA+ FV Sbjct: 123 CVDMGEPILEPDRIPF-----KCNRQR----AVNEQIQVKGETVSITAVSMGNPHAVIFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ DL + G + H +F N+ V + + L +R WERG G T ACG+ A A Sbjct: 174 -DDVKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +VA+ T V + GG L I W +NH+F TG A + G++ I Sbjct: 233 VLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283 >gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] Length = 288 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 140/293 (47%), Gaps = 26/293 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + + AL+ + HF DQ++L+ D Sbjct: 3 LPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALA---DRHFGVGADQVLLVERPTLDGAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC VRF+ + + + + G+L +G + VD Sbjct: 60 FRYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-------LRNPFVVSMGNPHAIFFVE 172 MG P+ + +P FD D G + LF R VVSMGNPHA+ V Sbjct: 120 MGSPVFEPARVP----FDAAGLDARREG-ADTLFPLEVGGTTRWISVVSMGNPHAVQVV- 173 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ + +A G L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+ Sbjct: 174 DDVETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAA 233 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDI 281 V A + V+V+ GG L I W + M G A +EG ++ Sbjct: 234 VAAGIRRGLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFEL 286 >gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens] gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens] Length = 277 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T + I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV+MG P L IPL DR +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-I 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + + ++V + GG L I+W + +TG A +EG L Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11] gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185] gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736] gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605] gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718] gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591] gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299] gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9] gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933] gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046] gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227] gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli] gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11] gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15] gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185] gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1] gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3] gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101] gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520] gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482] gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120] gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263] gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489] gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007] gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509] gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2] gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1] gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3] gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253] gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167] gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227] gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736] gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605] gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718] gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591] gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299] gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9] Length = 275 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073] gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972] Length = 274 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K+++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] Length = 277 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN + ++ C + HF D +++I+ + A D Sbjct: 3 FTKMHGLGNDYVYVN---CFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + S + ET+ GI L K+ + + Sbjct: 58 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P L + IP+ +++ + +G + + VSMGNPH + +V+D L Sbjct: 118 VDMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVKD-LEG 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G H F + VN +V +++++R WERG G T ACG+ ACA VAS Sbjct: 173 VKIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG LLIEW + V+MTG A ++G++ I Sbjct: 233 LNGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277 >gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] Length = 277 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T + I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV+MG P L IPL DR +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + + ++V + GG L I+W + +TG A +EG L Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541] gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541] Length = 278 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 144/288 (50%), Gaps = 26/288 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 + F+KM G+GN +V+D G N+ S + D +T FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 RI N DGSEV CGNG RC RF LT++ K K T ++ R L EN D + Sbjct: 63 HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMTLTINENDD--VC 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP + + +P F + ++ +I + VVSMGNPH + VE + Sbjct: 120 VNMGEPEFEPQKVP----FRAVKEEKTYIIRAQERTVLC-GVVSMGNPHCVVQVES-VQT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234 ++ G L H F E N+ + S E + LR +ERG G T ACGS ACA+V + Sbjct: 174 AEVEVLGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGI 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 G L K V V + GG L I W ++MTG A ++G + I Sbjct: 234 GQGLLSKR---VRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278 >gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF) (SP:P08885) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 275 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271 >gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205] Length = 341 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 30/293 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M F+K +G+GN L++D R D +T + + L +++ + Sbjct: 1 MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPPNGG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSI 116 + +RI N DG+E + CGNG+RC+ RFL +++ +T+ G +V + DG+I Sbjct: 61 GELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGTI 120 Query: 117 SVDMGEPILDWKLIP---------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 VDMG P L IP L ++D +RF + MGNPH Sbjct: 121 RVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERFAVA-----------AAGMGNPHV 169 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + V D + DL FG+ L HP F N+ V S L +R WERG G T ACG+ Sbjct: 170 VVPV-DSVDEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGT 228 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ACA++VA L + R + + GG L I W N VFM G A+ ++G + Sbjct: 229 GACATLVACHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281 >gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] Length = 275 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158] Length = 274 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + IP F +++L VVSMGNPH + V D++ Sbjct: 121 PGFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVIQV-DNV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAV 227 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W H +FMTG A ++G Sbjct: 228 GIQQGLLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 270 >gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786] Length = 293 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 141/289 (48%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALA---DRHFGIGADQLLLVEKPTVEGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G+++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + +P A + + P++ + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287 >gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297] gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297] Length = 274 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 11/274 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID ++++ I + FDQ++L+ D RI Sbjct: 5 FTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDFRYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV++CGNG RC RF+ ++ + ET G L + +G ++VDMG P Sbjct: 65 FNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDMGRPR 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP + D+ + +N L + +++GNPH + V DD+ D+ Sbjct: 125 TRPDKIPF------LADDKAALYDINVLDETLSISAINVGNPHCVTRV-DDVLTADVERL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H F + VN ++ ++ LR +ERGVG T ACG+ ACA+VVA + Sbjct: 178 GPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNGWLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VSV + GG L I W ++ MTG A + +EG Sbjct: 238 HTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEG 271 >gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 277 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T + I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV+MG P L IPL DR +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAI 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + + ++V + GG L I+W + +TG A +EG L Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] Length = 290 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 152/302 (50%), Gaps = 41/302 (13%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVD 61 F KM G+GN + +D+ + + + + A++ D +T D ++LI + A + Sbjct: 5 SFTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPLK 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115 +RI N DGSE ++CGNG+RCV ++ ++ ++F ET+ G++ A+ + S Sbjct: 63 --MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTS 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNP 165 ++VDMGEP L+ IP+ +GP + PF VSMGNP Sbjct: 121 VTVDMGEPRLERSAIPM-------------VGPKAERVVAEPFAIAGGEYEMTAVSMGNP 167 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H IF+V DD+ + G L+ K F EGVN+ V + L R WERG G+T AC Sbjct: 168 HVIFYV-DDIQKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQAC 226 Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 G+ ACA+VVAS KT R V + GG L I W + V MTG A+ G + Sbjct: 227 GTGACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRG 286 Query: 284 GK 285 G+ Sbjct: 287 GR 288 >gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] Length = 274 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTATVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 270 >gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147] Length = 293 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 140/289 (48%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALA---DRHFGIGADQLLLVEKPTVEGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + +P A + + P++ + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287 >gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] Length = 265 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM N ++ID R + D DQ++ I D D S D I Sbjct: 1 MNFIKMHSNANDFVIIDRRN-TGDAAIDYAAIAHRKTGVGCDQVVTI-DRSDGSTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +VA++ G I V++G P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+AR D + P++ P V+MGNPH +FFV + L G Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ MF + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + M GG LL EW ++ ++ + + G L Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265 >gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] Length = 280 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 147/285 (51%), Gaps = 21/285 (7%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---G 237 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ G Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L + ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KLEH-GKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT] gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT] Length = 284 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ R + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178 P+ + IP+A D + I P+N + R V VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ Sbjct: 178 PLGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 L + V +K+ GG L +EW ++ V++TG+A+ I TG+W+K Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280 >gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] Length = 286 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 8/236 (3%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 +I+ D +RI N DGSE + CGNG+RC +F+ ++ + + SF+ ET GIL Sbjct: 45 VIYVLPSLDADFKMRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFP 104 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHA 167 + ++G++ VDMG P L+ IP+ K+ D +I N + N VSMGNPH Sbjct: 105 EILKNGNVCVDMGIPNLNSDDIPVKGFSKKVIIDELLNISHENKAYRIN--CVSMGNPHC 162 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + F D + ++ + G+++ H F + N+ + S L ++ WERG G+T ACG+ Sbjct: 163 VIFT-DKIDGINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGT 221 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 +CA+VVA+ + N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 222 GSCAAVVAAILNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEV 277 >gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] Length = 292 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 138/292 (47%), Gaps = 18/292 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM+G GN +V+D +T L+ + HF DQI+ + + Sbjct: 2 QIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLA---DRHFGVGADQILTVRPSPAEGI 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG EV+ CGNG RC R++ + R + +T+ G++ + DG ++V Sbjct: 59 DFEYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTV 118 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRD-----RFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 DMG P D +P A R +G + + VVSMGNPHA+ V Sbjct: 119 DMGRPRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLV- 177 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +A G L+ H F + VN ++ + LR +ERG G T ACG+ ACA+ Sbjct: 178 GDVDAAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAA 237 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282 V A L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 238 VAAGIRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289 >gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 275 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271 >gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 277 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 145/286 (50%), Gaps = 24/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V + DN D + HF D ++++ D Sbjct: 3 FTKMNGLGNDFIVFENL---DNEEYDYDILARKLCDRHFGIGADGLLIVE--PSGIADIK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +RIIN DGSE + CGNG RC +++ +K+ + ET+ GI L+ K++ + Sbjct: 58 MRIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDDL 175 V MG PI +IP+ K D+ F I + R V S+ G PH I FV + + Sbjct: 118 VHMGSPIFRTDMIPV-----KTDKKSF-IEETIKIDGRTYIVTSLLVGVPHTIIFV-NSI 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VA Sbjct: 171 DKNMILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVA 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S KT R V V G L IEW +N++++TG A++ + G++ I Sbjct: 231 SALTEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276 >gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] Length = 277 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 21/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG+GN + +D G + ++ D + + HF D +++I D Sbjct: 5 FTKMEGLGNDYIYVD--GINQDVCMDK-EFIKKISDRHFGIGSDGMIVI--LPSDKYDFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE + CGNG+RC +F+ + ET G+ + + DG Sbjct: 60 MRMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGAK 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+PIL IP + + M I + N +SMGNPH + FV DDL Sbjct: 120 VDMGKPILTCSDIPCNYNQETMIDQTIVIDDYKY----NLTSISMGNPHTVTFV-DDLET 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL G H MF EGVN V + + +R WERG G T ACG+ ACA++ AS Sbjct: 175 LDLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYASY 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T V+V++LGG L IE+ N+ + M+G A +EG +++ Sbjct: 235 LNNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277 >gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311] gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311] Length = 380 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 22/290 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R NI N + + F D ++L + Sbjct: 1 MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +++ ET+ G++V + DG Sbjct: 61 E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFV 171 I VDMG+P L+ +P + + R + P + L+ + V MGNPH + V Sbjct: 120 IRVDMGKPFLNSDQVPT-----NLPQGRSGL-PQGEIDLQGSTLQLAAVGMGNPHVVVPV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D L ++G+ L +F N+ V +L++R WERG G T ACG+ ACA Sbjct: 174 QD-LKSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ++VA+ L + +VK+ GG L I W D VFMTG A ++G L+ Sbjct: 233 TLVAASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLN 282 >gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] Length = 276 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + L D NT FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGVGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G + L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQLVELA-----AVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863] Length = 275 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] Length = 285 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 145/285 (50%), Gaps = 10/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 ++ + F+KM G+GN +V+D + T + I L+ FDQ++++ D Sbjct: 7 IKEGNMQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPD 66 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+T + +K T +G +V DG I Sbjct: 67 LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIR 126 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPI + IP + +K +++ V + VSMGNPH + V D++ Sbjct: 127 VNMGEPIWEPNKIPF--TANKFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DNIET 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++A G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 181 ANVAELGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGI 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 241 MQGLLDNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285 >gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] Length = 289 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + + P F + VN +V S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289 >gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51] gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51] Length = 285 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 14/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + + I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F ++ +I V LF VSMGNPH + V DD+ + + Sbjct: 125 FEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + V V + GG L I W ++MTG A ++G Sbjct: 237 DEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGP 273 >gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris] gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris] Length = 277 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 142/285 (49%), Gaps = 23/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV+MG P L IPL DR +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISIGNPHAVLLVEN-I 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + + ++V + GG L I+W + +TG A +EG L Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] Length = 283 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 146/290 (50%), Gaps = 24/290 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 + ++ F KM G GN + +D G + ++ + +AL T + D ++LI + Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE-WSALHTGIGS--DGLVLIG--RSG 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 D +RI N DGSE + CGN RC+ ++L + T +T+ GI L + N+ Sbjct: 57 KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNK 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 +++VDMG P + +D + P+ +R VSMGNPH + FV Sbjct: 117 VDTVTVDMGIPACE------PACYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV 170 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D+ DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA Sbjct: 171 -NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACA 229 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + VA+ ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 230 TAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454] gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 14/286 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64 F KM G GN +V+D G + I+ + A+ D N DQ++L+ VD Sbjct: 46 FTKMHGAGNDFVVLD--GVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVDFKY 103 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ T + ++ + G++ +G + VDMG Sbjct: 104 RIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVDMGA 163 Query: 123 PILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+L +P S RD + P++ H + VVSMGNPHA+ V DD + Sbjct: 164 PVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIV-DDADAAPV 222 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ H F VN ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 223 NRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGIRRG 282 Query: 241 KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W + + V M G A +EGK+D+ Sbjct: 283 VLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328 >gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1] gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D +++ ++ DQ++++ + VD Sbjct: 3 IKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + DG I+VDMG Sbjct: 63 RIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDMGA 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180 PIL +P + + + P++ VVSMGNPHA+ VED + Sbjct: 123 PILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDS-EAAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L+ +H F + VN +V ++LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 + V+V+ GG L I W V MTG A +EG++++ Sbjct: 242 LLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284 >gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60] Length = 274 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + FAKM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQLLVVEPPYDPDLDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + R+ T G + D ++V+MG Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + IP F ++ +I V + VSMGNPH + VED + + Sbjct: 120 EPQFEPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-VSRAQVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V + GG L I W + MTG A ++G Sbjct: 234 LDEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDG 270 >gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] Length = 280 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 33/296 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM GIGN + +++ + + + + ++ D ++LI + DA ++ Sbjct: 3 FTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DARMQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISV 118 + N DGSE + CGNG+RCV +++ K+ ET RG+L + + + V Sbjct: 61 MFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERVRV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAIFFVED 173 +MG PIL IP A D PVN + + VSMGNPH + FV D Sbjct: 121 NMGTPILKSADIPTALPGDP---------PVNQPLVVGDKTISVTCVSMGNPHCVTFV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L + G + H F VN A+V S + LR WERG G T ACG+ ACA++ Sbjct: 171 ELTDAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATL 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 VA +T+ + + GG L IEW D VFMTG A ++ TG+W + Sbjct: 231 VAGVLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPAT-------EVFTGEWFPE 279 >gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 274 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + + V L VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVPF--RANKAEKT-YIMRAVEQTILCG--VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 270 >gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] Length = 277 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 142/285 (49%), Gaps = 23/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV+MG P L IPL DR +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + + ++V + GG L I+W + +TG A +EG L Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z] gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z] Length = 274 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 139/279 (49%), Gaps = 12/279 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + I L+ FDQ++L+ D +D RI Sbjct: 3 FSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHYRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV CGNG RC RF+T + +K T +G +V DG I V+MGEPI Sbjct: 63 FNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGEPI 122 Query: 125 LDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP A F+K R I V VSMGNPH + VE D+ ++A Sbjct: 123 WEPAKIPFNANKFEKNYILRTDIQTVLC------GAVSMGNPHCVIQVE-DIKTANVAQL 175 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + LR +ERG G T ACGS ACA+ + Sbjct: 176 GPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLLD 235 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 236 SPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274 >gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] Length = 289 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116] gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116] Length = 276 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L R S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+L Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH] Length = 289 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +DA + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P S R D PVN R VVSMGNPHA+ V DD+ Sbjct: 120 DMGAPVFEPARVPFDTSGLGGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627] gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627] Length = 274 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] Length = 281 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 14/284 (4%) Query: 5 MVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 M++F KM G+GN +V+D+ R D +T I L+ FDQ++++ + Sbjct: 1 MLEFTKMHGLGNDFMVVDLITQRAYFDTLT---IQRLADRHFGIGFDQLLIVEPPDLPTA 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG+RC RF+ R + +T GI+ K +G + V Sbjct: 58 DFKYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRV 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P +LIP F + D + +N+ L VV+MGNPHA+ V D L Sbjct: 118 NMGYPKFAPELIP----FVTEETDPLYALELNNNQLLKIDVVNMGNPHAVTIVPDVLTA- 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++AS G + H F E VN+ ++ + + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 173 EVASIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMR 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 233 RGLLAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276 >gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T] gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T] Length = 277 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 133/281 (47%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VID ++T + A++ + HF DQ++++ VD Sbjct: 5 FTKMHGLGNDFVVIDATRAPVDLTPARVKAIA---DRHFGVGCDQLLVVEPAARPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ + + ET GI+ + DG ++VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L +P D + + +G VSMGNPHA+ V D + + Sbjct: 122 VPELAPAKVPFVSDSDAVVQP-LQVGGDTVAIT----AVSMGNPHAVQVVAD-VDAAPVV 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + +H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 176 EQGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V GG L I W V MTG A +EG++++ Sbjct: 236 LETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMEL 276 >gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047] Length = 261 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 9/237 (3%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103 FDQ++++ Q D RI N DGSEV+ CGNG RC F+ + +K ET Sbjct: 29 FDQLLVVEPPQSPKADFRYRIFNADGSEVEQCGNGARCFALFVRDKKLTNKKHLIVETKG 88 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G++ + ++VDMG P L IP F+ ++ +I +N L + VSMG Sbjct: 89 GVIELHVTNNNEVTVDMGVPTLQPSKIP----FEAKEQAISYIIDINGQPL-DISAVSMG 143 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPH + VED + D+ + G L+ H F + N ++ S + LR +ERG G T Sbjct: 144 NPHGVTLVED-VKTADVETLGPLVEGHSRFPQRTNAGFMQIISPSEIRLRVYERGAGETL 202 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 ACG+ ACA+VVA +V+V + GG L I W + V MTG KK +EG++ Sbjct: 203 ACGTGACAAVVAGRLRGLLEESVTVHLPGGSLNIVWPGEGQPVKMTGPCKKVFEGRI 259 >gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74] gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70] gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671] gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71] gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71] gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6] gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218] gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227] gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304] Length = 274 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica] Length = 278 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D NT FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLA-DRNTGIGFDQLLVVEAPYDPDLDFH 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MG Sbjct: 64 YRIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + IP F + ++ +I V + VVSMGNPH + V D + ++ Sbjct: 124 EPEFEPHNIP----FRALRAEKTYILRVIEKTVLCS-VVSMGNPHCVIQVAD-VETAEVE 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 178 ILGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQL 237 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W N ++MTG A ++G + + Sbjct: 238 LDSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278 >gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98] gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14] gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9] gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210] gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894] gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177] gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112] gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215] gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] Length = 289 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] Length = 279 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 23/288 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 + F KM G GN + I+ C DAI + H+ D I+LI A Sbjct: 3 LSFTKMHGTGNDYIYIN---CFKEKFTVEDAIKYSPILSHRHYSIGADGIILIMPSDKAD 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113 V +R+ N DGSE + CGNG+RCV ++ R K ET+RGIL A K+ Sbjct: 60 VQ--MRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++ + M PIL+ IP + + + F VSMGNPHA+ FV + Sbjct: 118 DTVEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYFT----AVSMGNPHAVIFV-N 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL++ D++S G+ + + +F N+ + + + RTWERG G T ACG+ A A Sbjct: 173 DLHNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVC 232 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA +T+ + +LGG L++ + +N++VFM GEA+ +EG + + Sbjct: 233 VAGFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279 >gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 269 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 150/278 (53%), Gaps = 16/278 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN +VI+ R D + AI D ++++ D +RI N D Sbjct: 1 MHGLGNDFIVIEARENVD-YSELAIKLCDRHFGIGADGLLVVE--PSGIADIRMRIFNAD 57 Query: 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMGEPI 124 GSE + CGNG RC +++ R +K++ ET+ G+++ + EN + S+ V MG PI Sbjct: 58 GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP+ K D+ +F PV + + +G PH I FV+ L + Sbjct: 118 FEANKIPV-----KTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKS-LDENMIKEL 171 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L KT Sbjct: 172 GPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTE 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 232 RNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269 >gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107] gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107] Length = 354 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 138/291 (47%), Gaps = 31/291 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIML 51 M+ F+K +G+GN L+++ R D ++ +D + ++ D ++L Sbjct: 1 MLQFSKYQGLGNDFLILEGR-------QDQLDVAISDPDPNWVRRICDRRFGVGGDGVIL 53 Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVA 108 Q A D +RI N DG+E + CGNG+RC+ R+L + ET G++ Sbjct: 54 ALPPQ-ADGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRP 112 Query: 109 KENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + +G + VDMG P L+ IP + R I V N V MGNPH Sbjct: 113 ELMTNGQLRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDGVPL----NVASVGMGNPHV 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + V DDL +G L HP+F N+ +V S L++R WERG G T ACG+ Sbjct: 169 VVPV-DDLSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGT 227 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ACA++VA+ L + V + GG LLI W V MTG A+ ++G Sbjct: 228 GACATLVAAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDG 278 >gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] Length = 244 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 16/228 (7%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ FLT SR K + T+ GI+ + DG Sbjct: 24 DYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSK-DYYLIHTLAGIIRPQLTDDGQ 82 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE 172 + VDMG P L + IP L K+ IG H+ VSMGNPH I FVE Sbjct: 83 VKVDMGSPRLLAQEIPTTLVPGDSKVINLPLEIGKQTWHIT-----CVSMGNPHCITFVE 137 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + + G HP+F + N +V + L +R WERG G+T ACG+ ACAS Sbjct: 138 D-VASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHLKMRVWERGAGITLACGTGACAS 196 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 +VA + +R ++++ GG L I+W + + ++MTG A++ + GK+ Sbjct: 197 LVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTGPAERVFTGKI 244 >gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 305 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 32 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 92 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D+K L+ + +D + F I +N + N +VS+GNPH I V+ + + + Sbjct: 152 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 205 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 206 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] Length = 288 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 143/290 (49%), Gaps = 24/290 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D +T + + AL+ + HF DQ++L+ VD Sbjct: 5 FTKMQGAGNDFVVLDGTAGDLGLTPERVRALA---DRHFGIGADQLLLVERPSLDGVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + + + + G++ +G + VDMG Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDMG 121 Query: 122 EPILDWKLIP-----LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDL 175 P+ + +P LA D D + P+ + R VVSMGNPHA+ V DD Sbjct: 122 SPVFEPARVPFDVAGLAGRRDGADT----VYPLEVNGATRWISVVSMGNPHAVQLV-DDA 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 177 EAFAVLEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W ++M G A ++G +++ Sbjct: 237 GIRRGLLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIEL 286 >gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] Length = 280 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M + +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE ++CGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP L R+ F NH + VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 284 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D+K L+ + +D + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] Length = 276 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 131/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 2 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 62 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 122 EPNFEPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVETAAVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 176 TLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V++ GG L I W ++MTG A ++G Sbjct: 236 LAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDG 272 >gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 275 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS F+Q++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271 >gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264] Length = 289 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 139/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +DA + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P S R D PVN R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] Length = 269 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 35/291 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172 ++VDMG P ++ + G + PF VSMGNPH + FVE Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 -DITRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA+ T R V M GG + IEW++ + H+ MTG A K ++G+++ K Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIEDK 268 >gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2] gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1] gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] Length = 276 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 143/288 (49%), Gaps = 24/288 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + L D NT FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGVGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P L IP A S++ +++ R + VSMGNPH + VE+ Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----------AVSMGNPHGVLRVEN- 168 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ V Sbjct: 169 VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A V + + GG L IEW V MTG A + +EG++ + Sbjct: 229 AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 281 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + N VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFIAEQPEALYTLELANDQNINIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] Length = 289 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDDA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044] gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] Length = 275 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 16/280 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V + G Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 L +T V V++ GG L I W +FMTG A ++G Sbjct: 235 LAET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 271 >gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a] gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a] Length = 274 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K+++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] Length = 275 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 21/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN + I+ C D T + H+ D ++LI + + D Sbjct: 3 FTKMHGLGNDYVCIN---CFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + I N DGS CGNG+RC+ +++ +++ + ET GI L ++ + Sbjct: 58 MEIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAM 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ IP+ D + D + N+ +SMGNPHA+ F+E+ + Sbjct: 118 VDMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLEE-ING 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP F E N+ VT+ + +++R WERGVG T ACG+ ACA+VVAS Sbjct: 173 ISLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 T+ V VK+LGG L + W NHVF+ G A K ++G L Sbjct: 233 LNDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275 >gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct] Length = 277 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + L D NT FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGIGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3] gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3] Length = 280 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 151/284 (53%), Gaps = 15/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLY 176 MG P+L+ IP + KM++ + + N F+ VSMGNPH + VE D+ Sbjct: 119 MGIPVLEPGRIPF--NAKKMEKT-YLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIE 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ G LL +H F +GVN+ ++ + + LR +ERG T ACG+ ACA+ V Sbjct: 175 AADVEGIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K + V V + GG L I W + ++MTG A+ ++G++ Sbjct: 235 QLQGKLDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278 >gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] Length = 276 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] Length = 276 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + L D NT FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGIGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131] gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131] Length = 278 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 + F+KM G+GN +V+D G N+ S + D +T FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF L ++ T G + N + + V+M Sbjct: 63 HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + + +P F + ++ +I + VVSMGNPH + VE ++ ++ Sbjct: 123 GEPDFEPQRVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVIQVES-IHTAEV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F E N+ + S + + LR +ERG G T ACGS ACA+V Sbjct: 177 EVLGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQG 236 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + ++MTG A ++G + + Sbjct: 237 LLAKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278 >gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] Length = 268 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 35/291 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172 ++VDMG P ++ + G + PF VSMGNPH + FVE Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 -DITQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA+ T R V M GG + IEW + + H+ MTG A K ++G+++ K Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268 >gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] Length = 274 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VI+ +N+ + D HF D ++++ D Sbjct: 3 FTKMHGLGNDFIVIE---ALENVDYSELAIKLCD--RHFGIGADGLLVVE--PSGIADIR 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSIS 117 +RI N DGSE + CGNG RC +++ R +K++ ET+ G+++ + EN + S+ Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVK 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174 V MG PI + IP+ K D+ +F PV ++ V G PH I FVE Sbjct: 116 VYMGNPIFEASKIPI-----KSDKQKFINEPVKIDGKVYKLTSLRV--GVPHTIVFVES- 167 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS V Sbjct: 168 LDENMIKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAV 227 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS L KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 228 ASAVLGKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 276 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RLVPEEIPFQTAEQAKSYSLDVDGQSVEL-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] Length = 284 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 15/288 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +++ F K G+GN ++ID R +I S + + + H+ D I+LI Sbjct: 2 TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILP-PV 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114 A D ++I N DGSE + CGNG+RC++R++ + SF ET+ G + +G Sbjct: 61 AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAG-KIQINIEEG 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +I VDMG PI + IP ++ + I ++ FL + SMGNPHAI V Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFLVS--ACSMGNPHAIIEVPT- 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + L +G L HP+F + N+ +V S +++ WERG G T ACG+ ACA + Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L K N + VK+ GG L I W +FM G+AK + G +I Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284 >gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] Length = 266 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 26/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM+G GN + ++ + + + + +T L+ D +R Sbjct: 3 IEFTKMQGAGNDYIYVNTL-IYPLPNPEELAVAWSRPHTGIGSDGLVLIGSSGKADFSMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119 I N DGSE + CGN RC+ +++ ++ T +T+ GI L ++ + +++VD Sbjct: 62 IFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAVTVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + + L + R VSMGNPH + FV DD+ D Sbjct: 122 MGIP-AEIHPVDLGEGYP----------------YREGIAVSMGNPHLVIFV-DDMEQVD 163 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G +L +HP+F + VN+ A+V + + +R WERG G+T ACG+ ACA+ VAS Sbjct: 164 LPRVGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVASAYT 223 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 H+ + M GG L I W + +FMTG A+K ++G + + Sbjct: 224 HRCPGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266 >gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] Length = 311 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ N HF DQ++++ Sbjct: 25 LSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALA---NRHFGIGADQLLVVEKPTVDGA 81 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + V Sbjct: 82 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 141 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + + A + R + P++ R VSMGNPHA+ V DD Sbjct: 142 DMGAPVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 200 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 Y + G L+ +H F + VN ++ S + LR +ER G T ACG+ ACA+V A Sbjct: 201 AYPVLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAG 260 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A+ +EG++D+ Sbjct: 261 IRRGLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDL 309 >gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] Length = 295 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +++D ++ L+ + HF DQI+ + +D Sbjct: 6 IRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLA---DRHFGVGADQILTVRPSPGEGID 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC VRF+ + + + +T+ GI+ DG ++V+ Sbjct: 63 FEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVTVN 122 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPV---NHLFLRNPFV--VSMGNPHAIFFVED 173 MG P+ + + IP + P+ H FV VSMGNPHA+ V D Sbjct: 123 MGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV-D 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L+ HP F VN +V S + LR +ERG G T ACG+ ACA+V Sbjct: 182 DVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACAAV 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 VA L + V V GG L IEW + V MTG A +E ++++ Sbjct: 242 VAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292 >gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 275 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 133/278 (47%), Gaps = 12/278 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP + P +F ++ +I L VVSMGNPH + V D++ + Sbjct: 121 EPNFE----PAQVTFRANKAEKTYIMRAAEQTILCG--VVSMGNPHCVIQV-DNVDTAAV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 174 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 234 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271 >gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] Length = 287 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 140/289 (48%), Gaps = 17/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V D ++T++ ++ DQI+++ Q+ + D Sbjct: 3 LKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R RF+T + R ET GI+ + ++G+++V+MG+ Sbjct: 63 RIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNMGK 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSMGNPHAIFFVED 173 P IP A I P L L P +VSMGNPHA+ VE+ Sbjct: 123 PEFSPDRIPFDASGLKGKPAGDDMIWP---LALELPKGLQTIEVSLVSMGNPHAVQIVEN 179 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + G L+ H F N + + S+ LR +ERG G T ACG+ ACA+V Sbjct: 180 -VDKAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAV 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 VA + V+VK GG L I W+ N H V MTG A + G++D+ Sbjct: 239 VAGIRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287 >gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 15/285 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASV 60 + + F K +G+GN +++D R S +A+ + D ++ + Q+ + Sbjct: 2 TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGA- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSIS 117 D +R+ N DGSE + CGNG+RC+ RFL + ++ T+ G +V + DG ++ Sbjct: 61 DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L K IP L +K+ R + VSMGNPH + F+E++ Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGREWRVT----AVSMGNPHCVVFLEEEG 176 Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L A+ G L HP F E N +V S L LR WERG G T ACG+ ACA + Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 VA+ + +V++ GG L I W HV+MTG A + G Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSG 281 >gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 274 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DNVETAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 270 >gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] Length = 278 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 28/290 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G+GN +VI+ ++T + + HF DQ++++ ++ D Sbjct: 3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG-D 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC RF+ + + + ET RGI+ +G +SV+ Sbjct: 62 FRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVSVN 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175 MG P + IP ++ +M PV L + + + VS+GNPHA+ + D Sbjct: 122 MGVPQFEPAEIPF-QAAQRM--------PVYPLQIGDKTIEISAVSIGNPHAVQIIPD-- 170 Query: 176 YHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA G + HP+F E VN ++ + LR +ERG G T ACG+ ACA+ Sbjct: 171 --IDLAPVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAA 228 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VV + V V M GG L I W + V+MTG A +EG +D+ Sbjct: 229 VVCGILRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278 >gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2] gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 269 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 35/291 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172 ++VDMG P ++ + G + PF VSMGNPH + FVE Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 -DITRINLPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA+ T R V M GG + IEW + + H+ MTG A K ++G+++ K Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268 >gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. W3110] gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536] gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS] gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933] gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227] gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046] gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A] gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11] gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22] gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171] gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024] gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88] gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9] gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B] gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000] gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966] gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412] gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354] gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088] gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736] gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W] gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110] gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536] gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS] gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A] gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11] gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22] gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171] gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88] gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82] gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1] gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042] gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088] gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412] gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354] gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034] gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W] gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146] gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407] gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C] gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W] gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1] gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431] gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112] gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83] gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212] gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327] gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B] gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89] gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687] gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905] gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61] gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14] gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010] gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68] gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180] gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1] gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11] gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252] gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125] gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044] gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86] gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74] gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88] Length = 274 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] Length = 284 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 32/294 (10%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIMLIH 53 +F+K +G+GN ++ D R S+ ++ L + + +F D I+LI Sbjct: 4 NFSKYQGLGNDFIIFDAR-------SNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILI- 55 Query: 54 DFQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVA 108 +++ F+R I N DGSE + CGNG+RC++ FL + + ET G+++ Sbjct: 56 --LESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILT 113 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + +I V+MGEPIL IP + + I + + N + SMGNPH I Sbjct: 114 SIDCNENIKVNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMI 171 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV +D+ +G+ L KH F N+ + ++ ++ WERG G T ACG+ Sbjct: 172 VFV-NDIEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTG 230 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 ACA +V + L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 231 ACACLVVTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] Length = 275 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 M+ F KM G+GN +V+D G N+ + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+ Sbjct: 59 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVN 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+++ IP K ++ P+ +SMGNPH + VE D+ + Sbjct: 119 MGVPVIEPSQIPFKAK--KSEKTYLLQTPMQTYLCG---AISMGNPHCVIQVE-DVQTVN 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ L +H F +GVN+ +V + + LR +ERG T ACG+ ACA+ Sbjct: 173 VDEIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQ 232 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K ++ V V + GG L+I W + ++MTG A+ ++G++ + Sbjct: 233 DKLDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275 >gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] Length = 284 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 18/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH-DNITS-DAINALSTDDNTHF----DQIMLIHDFQDASV 60 +F+K +G+GN ++ D R + D++ S + N + N +F D I+LI +++ Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILI---LESNN 60 Query: 61 DAFIR--IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGS 115 F+R I N DGSE + CGNG+RC++ FL + + ET G+++ + + + Sbjct: 61 KCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNEN 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MGEPIL IP + + I + + N + SMGNPH I FV +D+ Sbjct: 121 IKVNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDI 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G+ L KH F N+ + ++ ++ WERG G T ACG+ ACA +V Sbjct: 178 EGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 238 TSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 274 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 270 >gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] Length = 276 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ D+ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S + + LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + +V V + GG L I W +FMTG A ++G+L Sbjct: 237 DESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274 >gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] Length = 281 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 134/279 (48%), Gaps = 7/279 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +V+D G ++ + I L DQI++I VD RI Sbjct: 5 FTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDFRYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N G EV+ CGNG RC VR++ + + ET+ +L DG + VDM P+ Sbjct: 65 FNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDMNRPV 124 Query: 125 LDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D +P A + F + P+ + V+SMGNPHA+ V D A Sbjct: 125 FDLARVPFDASGLTPRLVNGFELWPLADAGVEVA-VLSMGNPHAVMRVADVDAAPVAAV- 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + H F VN +V S + LR +ER G T ACG+ ACA+VVA L + Sbjct: 183 GPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRLGWLD 242 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 R V V GG LLIEW D++ V MTG A +EG++++ Sbjct: 243 RRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281 >gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] Length = 274 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R+ T G + + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D IP F ++ +I V + VSMGNPH + VED + +A Sbjct: 121 PQFDPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-VSQAQVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V++ GG L I W + M G A ++G Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDG 270 >gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01] gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01] Length = 276 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+L Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101] gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101] Length = 274 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] Length = 276 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + S + T +G +V D ++V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 EP + IP F ++ +I + LF VSMGNPH + V DD+ D Sbjct: 122 EPEFEPGKIP----FKAKQTEKTYILRADDKTLFCG---AVSMGNPHVVT-VVDDVTTAD 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G LL H F E VN +V + ++LR +ERG G T ACGS AC +V Sbjct: 174 VDTLGPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A ++G+L Sbjct: 234 GLLDEKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQL 274 >gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1] Length = 276 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + G ++ + VSMGNPHA+ V DD++ + Sbjct: 122 PPRFIPAEIPFVADAQALSYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVHTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] Length = 292 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 144/289 (49%), Gaps = 27/289 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 S + F KM+G+GN + ++ G + I + + A+ N +F D ++LI+ + A Sbjct: 13 ESRMKFTKMQGLGNDYVYVN--GFEERIENPSEMAVKVS-NRNFGVGSDGLILINPSEKA 69 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 D + + N DGS + CGNG+RCV +++ + + ET+ GI L ++ + Sbjct: 70 --DFEMEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGK 127 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIF 169 + VDMG PIL IP+ D V L + VSMGNPHA+ Sbjct: 128 VVLVRVDMGSPILTPAQIPVIA-------DEAEAVAVPILVDETEYQMTCVSMGNPHAVI 180 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 F+ DD+ H ++ G H F VN +V + +R WERG G T ACG+ A Sbjct: 181 FM-DDIEHLEIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGA 239 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 CA VA T V+VK+LGG LLIEW + N ++MTG A+ ++G Sbjct: 240 CAVAVACILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDG 288 >gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] Length = 278 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 42/293 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V++ + T D I+AL+ + FDQ++L+ + ++ D RI Sbjct: 6 FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----------DGS- 115 N DGSEV+ CGNG RC+ +++ R + F+ R +V + R +GS Sbjct: 66 FNADGSEVEHCGNGARCLGKYI-----RDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSE 120 Query: 116 -ISVDMG----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 V MG P + LA+ + F G +VSMGNPHA+ Sbjct: 121 LFRVQMGVPDFSPFTTLQTSALAQPL-SLAAGHFECG-----------IVSMGNPHAVIC 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ + + G+ L +HP+F + VN+ ++ + E + LR +ERGVG T ACG+ AC Sbjct: 169 V-DDVETAAVTAIGSALQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGAC 227 Query: 231 ASV---VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 A+V +A G L +T V V + GG L+I+W + +FMTG A + G++ Sbjct: 228 AAVSVGIARGDLAQT---VHVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277 >gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 276 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 145/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNVPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638] gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638] Length = 274 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F + ++ +I + + VVSMGNPH + V DD+ + Sbjct: 121 PNFEPSAVP----FRAIKAEKTYIMRASEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H +FMTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDG 270 >gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] Length = 276 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP ++ G ++ + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFTPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276 >gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v] Length = 274 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4] gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4] Length = 271 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 18/280 (6%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI + D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKADFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123 DGSE CGN RC+ +++ +++ T ET+ GI + K + + ++VDM Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDM--- 115 Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D L+ +R + D V+ + FV MGNPH + F+ DD+ + +L + Sbjct: 116 --DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DDIKNVNLPA 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK Sbjct: 172 IGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKA 231 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 232 GRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25] Length = 276 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 137/278 (49%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ D+ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGEKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG ++G+L Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14] Length = 276 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 138/284 (48%), Gaps = 23/284 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + D + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYVN---CFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + T ET+ GI L + + + Sbjct: 58 MAMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVR 117 Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG PIL IP+ DK +D G H+ VSMGNPHA+ +V DD+ Sbjct: 118 VDMGSPILTPAEIPVVAEGDKAVDEPILVDGKEYHMTC-----VSMGNPHAVVYV-DDVN 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G H F VN +V ++ +R WERG T ACG+ ACA V+ Sbjct: 172 NLPIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSC 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T V+VK+LGG L I+W + N V+MTG A ++G+L Sbjct: 232 ILNGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGEL 275 >gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Mississippi] Length = 268 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + + D DQ++ I D D D I Sbjct: 4 VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 62 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG LL EW ++ + + + G L Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 268 >gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] Length = 276 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 132/282 (46%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN ++ID + I ++ DQ++L+ S D Sbjct: 3 VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSE CGNG RC RF+ R +++ L ++N D + VDM Sbjct: 63 RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHD--VEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IPL R + ++ D G + VSMGNPHAI V D + + L Sbjct: 121 GPPNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRV-DAVDNGSL 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + H F EG N + +++ LR +ERGVG T ACGS ACA+VV + Sbjct: 175 ERLGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V++ GG L I W DN+ V MTG +EG + + Sbjct: 235 WLDDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276 >gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 18/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDA 62 + F KM +GN + +D + +D + +L+ +D LI S D Sbjct: 1 MQFFKMHALGNNYVFVDT--ARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSADV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGS 115 +RI N DGSE +SCGNG+RCV R+ R + F+ ET G++ A+ E R Sbjct: 59 GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +++DMGE + +P R D+ + R G + +VSMGNPH + V+ Sbjct: 119 VTIDMGEARFGTEAVPY-RGADRGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G ++ HP F E VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 174 DVD-VERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 233 LAKKGLVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEG 274 >gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] Length = 283 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 137/284 (48%), Gaps = 21/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEGIGN + D G + I D + D HF D +++I D Sbjct: 11 FTKMEGIGNDYIYFD--GINQEIPMDKEFIMKISDR-HFGIGSDGMIVI--LPSDQYDFK 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE CGNG+RC +F+ + ET G+ + DG Sbjct: 66 MRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P+L + IP + +KM + IG + +SMGNPH + FV D L Sbjct: 126 VNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVSD-LDT 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 181 LDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACY 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ D + M+G A + G ++I Sbjct: 241 LNHYTDSKVTVELLGGCLEIEYVDET-IMMSGPAANVFNGTIEI 283 >gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. SMY] gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5] gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195] gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5] Length = 284 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 148/282 (52%), Gaps = 19/282 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + ++ AI S D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISV 118 RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ EN + ++V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L +P+ ++ + G V VSMGNPH +F + D + Sbjct: 124 DMGEPRLTKSELPMLDGGEEHTINETMAFGEVE----LTGTAVSMGNPHIVFPIAD-IEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + K N+ ++V + GG L+I W DN HV MTG A+ EG Sbjct: 239 LNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEG 280 >gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] Length = 261 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 123/241 (51%), Gaps = 17/241 (7%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101 FDQ++++ D D RI N DGSEV+ CGNG RC RF+ RMK + S + T Sbjct: 29 FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSLSVST 86 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFV 159 +G ++ D + V+MG P + IP F ++ +I V+ LF Sbjct: 87 KKGKIILSIEEDDQVCVNMGVPEFEPSKIP----FRAKQAEKTYIMRVDEQTLFCG---A 139 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPH + VED + ++ G LL H F E VN +V + + ++LR +ERG Sbjct: 140 VSMGNPHVVTVVED-IATAEVERIGPLLESHERFPERVNAGFMQVVNRQQINLRVYERGA 198 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 G T ACGS ACA+V + V+V + GG L I W ++MTG A ++G+ Sbjct: 199 GETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRLEISWQGPGQPLYMTGPATHVFDGQ 258 Query: 279 L 279 L Sbjct: 259 L 259 >gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 284 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VI+ +T I LS + FDQ++LI + D Sbjct: 11 IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RCV FL + ++ T + + K D +I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + I +++ K+ + F + +N + +VS+GNPH + VE + + + Sbjct: 131 PSFKLEEISISK---KIVLNNFSVKLINKNLKCS--LVSIGNPHCVIKVES-INNAPVKK 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V +LGG L+I+W N+ ++M G A ++G + I Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284 >gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] Length = 278 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 23/291 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALS-TDDNTHFDQIMLIHDFQD 57 M+ +M F+KM G+GN +V+D G N+ + + I+ L+ FDQ++L+ D Sbjct: 1 MERNM-QFSKMHGLGNDFMVVD--GVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYD 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENR 112 +D RI N DGSEV CGNG RC RF LT++ K K T ++ R +L EN Sbjct: 58 PDLDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMVLTINEND 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 D + V+MGEP + + +P F + ++ + I + L VVSMGNPH + V Sbjct: 117 D--VCVNMGEPEFEPQKVP----FRAIKAEKTYIIRALERTVLCG--VVSMGNPHCVIQV 168 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E + ++ G +L H F E N+ + S + LR +ERG G T ACGS ACA Sbjct: 169 E-SVKTAEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACA 227 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +V V V + GG L I W+ ++MTG A ++G + + Sbjct: 228 AVAIGIQQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278 >gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75] gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75] Length = 274 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] Length = 277 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + + D DQ++ I D D D I Sbjct: 13 VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 70 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 71 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG LL EW ++ + + + G L Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 277 >gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 276 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP ++ G ++ + VSMGNPHA+ V DD+ + Sbjct: 122 PPRFIPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVQTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] Length = 282 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 141/286 (49%), Gaps = 21/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G GN + ++ C DN AI + + D ++LI A D Sbjct: 3 FTKMHGAGNDYVYVN---CFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSIS-- 117 +R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + DG I Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKV 117 Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175 V+MG P L IP+A + + P+N L N VSMGNPH + FV DD+ Sbjct: 118 RVNMGVPRLKRAEIPMA---GEPADGQIVSQPLNILHTTFNITCVSMGNPHCVIFV-DDV 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 174 ESFQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW D+ ++MTG A + + G++D+ Sbjct: 234 GALNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDL 279 >gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 284 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D+K L+ + +D + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLINENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 287 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 13 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 72 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 73 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 132 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP ++ G ++ + VSMGNPHA+ V DD+ + Sbjct: 133 PPRFIPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVQTAPVH 186 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 187 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 246 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 247 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287 >gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 276 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 105/287 (36%), Positives = 146/287 (50%), Gaps = 22/287 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 G P L + IP A+S+ +D D G L VSMGNPHA+ V DD+ Sbjct: 121 GPPRLVPEEIPFQAAEQAKSY-SLDAD----GQTVELA-----AVSMGNPHAVLRV-DDI 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA Sbjct: 170 NNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVA 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 230 AISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14] gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14] Length = 276 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ + ++ LF SMGNPH + V DD+ D+ + Sbjct: 123 PIFEPNKIPMKAK--QAEKTYILRAGEQTLFCG---AASMGNPHCVT-VVDDVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + +FMTG A ++G+ Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666] gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666] Length = 299 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 143/295 (48%), Gaps = 24/295 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 ++ F KM+G GN +++D N+++ L+ + HF DQI+ + + Sbjct: 10 LIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLA---DRHFGVGADQILSVRPSPGEGI 66 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG EV+ CGNG RC VRF+ + + + +T+ G++ + DG ++V Sbjct: 67 DFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTV 126 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIF 169 DMG P+ + IP A + P L L + V+SMGNPHA+ Sbjct: 127 DMGAPVFELARIPFDAAGLTAQPAGSWEKWP---LTLEDKALSATVSIAVLSMGNPHAVQ 183 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V DD+ + G L+ H F + VN +V S + LR +ERG G T ACG+ A Sbjct: 184 LV-DDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGTGA 242 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 CA+VVA + V V+ GG L IEW + V MTG A +E ++++ Sbjct: 243 CAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVP 297 >gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] Length = 276 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+L Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] Length = 274 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVLQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDG 270 >gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937] gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937] Length = 274 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 132/277 (47%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F ++ +I H L VSMGNPH + V D++ + Sbjct: 121 PNFEPQQVP----FRAAKPEKTYILRAAEHTVLCG--AVSMGNPHCVIQV-DNVDTAPVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 TLGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H +FMTG A ++G Sbjct: 234 LAADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDG 270 >gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1] gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1] Length = 281 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 149/281 (53%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFIAEQPEALYTLELANDRNISIDVVNMGNPHAVTIVPDVLTA-DVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12] Length = 275 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHWLIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271 >gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4] Length = 289 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 138/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +DA + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P S R D PVN R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V V GG L I W + + M G A +EG +D+ Sbjct: 238 GIRRGQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] Length = 274 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ+++I D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVS+GNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSIGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 275 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 16/280 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS+V CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P +K ++ + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V + G Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 L +T V V++ GG L I W +FMTG A ++G Sbjct: 235 LAET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 271 >gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91] gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] Length = 289 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1] gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1] Length = 284 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178 P+ + IP+A D + I P+N + R V VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ Sbjct: 178 PLGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 L + V +K+ GG L +EW ++ V++TG+A+ I TG+W+K Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280 >gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12] gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12] Length = 280 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 27/291 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDA 58 M+ F KM G+GN +V+D G N+ + + I L+ N H FDQ++L+ D Sbjct: 1 MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLA---NRHFGIGFDQLLLVEPPYDP 55 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 +D RI N DG EV+ CGNG RC RF+ ++ ++ T G L + RDG++ Sbjct: 56 DLDFHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNV 115 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFF 170 +V+MG PIL+ IP F+ ++ ++ + FL VS+GNPH + Sbjct: 116 TVNMGIPILEPSKIP----FNAKRAEKTYLLQTDTAESKMQTFLCG--AVSLGNPHCVLD 169 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VE D+ D+ G LL +H F +GVN+ +V + + LR +ERG T ACG+ AC Sbjct: 170 VE-DVQATDVEGIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGAC 228 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 A+ V K + V V + GG L I W + ++MTG A+ ++G++ Sbjct: 229 AAAVVGQLQGKLDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279 >gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A] Length = 271 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 39/290 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R + AI D ++LI A D Sbjct: 2 TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119 Query: 116 ISVDMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMG P +DW K P + VSMGNPH + F Sbjct: 120 VTVDMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTF 156 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + DD+ +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ AC Sbjct: 157 I-DDITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGAC 215 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 A+ VA+ R V M GG + IEW + + H+ MTG A K ++G++ Sbjct: 216 ATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] Length = 272 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 19/280 (6%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN + ++ D+ S AI D +++I D D +R+ N Sbjct: 1 MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDDC--DFKMRMFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGSISVDMGE 122 DGSE + CGN RC+ +F+ + + T ET+ G+ + ++ +++VDMGE Sbjct: 59 DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 PI + LIP +++ PV N N VSMGNPHA+ F + DL Sbjct: 119 PIFESGLIPTT-----INKPSIINEPVTFNSEIKYNITCVSMGNPHAVIFTTG-IDKLDL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + +F N V S + + +R WERG G T ACG+ ACASVVA+ Sbjct: 173 NKIGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T R +V++LGG L IEW + +N V++TG A +EG + Sbjct: 233 HTGRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272 >gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp. (strain APS) gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 305 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 32 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 92 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D+K L+ + +D + F I +N + N +VS+GNPH I V+ + + + Sbjct: 152 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAPVNI 205 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 206 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329] Length = 276 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ D+ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + + LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + +V V + GG L I W +FMTG A ++G+L Sbjct: 237 DESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274 >gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] Length = 280 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 30/289 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61 F KM GIGN + ++ C + S+ + HF D ++LI D D +D Sbjct: 3 FTKMHGIGNDYVYVN---CFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVADCEMD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDG 114 + N DGS+ CGNG+RCV ++ + + + + T GI + + + Sbjct: 60 MY----NLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVA 115 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V+MG PIL + IP+ + +++ + ++ G H+ VSMGNPHAI ++ D Sbjct: 116 LVKVNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTYHIT-----AVSMGNPHAIVYM-D 169 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + D+ G H F + +N +V +L +R WERG G T ACG+ ACA Sbjct: 170 DLRNLDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVA 229 Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 VAS L ++ V+VK+LGG L I W+ N V+MTG A ++G++ Sbjct: 230 VASTLNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEI 278 >gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D+K L+ + +D + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145] gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145] Length = 275 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 141/280 (50%), Gaps = 9/280 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN +VID + + + I + FDQ++L+ D +D Sbjct: 2 LLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++V+MG Sbjct: 62 YRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP+ + +P + + + + L V+ +GNPH + DD+ +A Sbjct: 122 EPMFEPASVPFKA---QKPEHTYVLRVADETVLCG--VMGLGNPHCVIET-DDVNTAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G +A+H F E VN+ ++ S + + LR +ERGVG T ACGS ACA+ V K Sbjct: 176 SLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQDK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V V + GG L I W V MTG A ++G++ I Sbjct: 236 LERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQMVI 275 >gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] Length = 277 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + + T AI D ++++ + D +RI Sbjct: 3 LTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSNTCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVDM 120 IN DGSE + CGNG+RC ++ + + +FT ET+ G+ L + ++VDM Sbjct: 61 INSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G+P + K IP+ + DK +D D VN + V+ +G PH FV DD+ Sbjct: 121 GKPFFNSKDIPMNVTMDKVIDVDL----DVNGETVTVSSVL-LGVPHTEVFV-DDITKAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS V S Sbjct: 175 VTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHKK 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] Length = 288 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 154/289 (53%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + ++M + I + ++ ++ ++ NT D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 63 -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121 Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L +P L R+ F NH ++ VSMGNPHA+ FV DD+ Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYS--NHRYVFTG--VSMGNPHAVIFV-DDV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01] gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01] Length = 276 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 140/280 (50%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + S T +G +V K + I+V+MG Sbjct: 65 FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I V+ LF VSMGNPH + V DD+ D+ Sbjct: 123 PEFEPGKIP----FKAKQPEKTYILRTDVHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 ETLGPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V V++ GG L I W +FMTG A ++G+L Sbjct: 235 LLAENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQL 274 >gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] Length = 323 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 143/295 (48%), Gaps = 21/295 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VD 61 +S + F+K +G+GN ++ID R + + + D N +I D Sbjct: 34 ASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPPVGDTD 93 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + + + T+ G++ + DG + VD Sbjct: 94 LTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVRVD 153 Query: 120 MGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF----- 170 MGEPIL+ +P + + + +D G + VSMGNPHA+ + Sbjct: 154 MGEPILEGAKVPTTLAPTQGSTVVQQDLIVDGKTYKVS-----CVSMGNPHAVIYSCDGD 208 Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ D DLA G ++ +F N V + + + WERG G T ACG+ A Sbjct: 209 TIKIDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGA 268 Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 CA VVA + +R V + GG L IEW+ ++NH++MTG A+ + G L + Sbjct: 269 CALVVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323 >gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1] gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1] Length = 276 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + G ++ + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276 >gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] Length = 388 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 143/286 (50%), Gaps = 14/286 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQD 57 +++ F+K +G+GN L++D R D + + + + D ++L + Sbjct: 7 AVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALP-PE 65 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDG 114 + +RI N DGSE + CGNG+RC+ RFL +++ ET+ G +V + DG Sbjct: 66 GDGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLADG 125 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMGEP L + +P + + + F MGNPH + ++ Sbjct: 126 MVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAA--AAGMGNPH-LVIPVEE 182 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL FG LL +HP F N+ + + L +R WERG G T ACG+ ACA++V Sbjct: 183 VEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATLV 242 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A L + R+ + + GG L I+W +NH+FMTG A+ ++G L Sbjct: 243 ACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288 >gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] Length = 288 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 154/289 (53%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + ++M + I + ++ ++ ++ NT D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 63 -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121 Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L +P L R+ F NH ++ VSMGNPHA+ FV DD+ Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYS--NHRYVFTG--VSMGNPHAVIFV-DDV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] Length = 276 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 140/280 (50%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + S + T +G +V D ++V+MG Sbjct: 65 FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I + LF VSMGNPH + V DD+ D+ Sbjct: 123 PEFEPNKIP----FKAKQTEKTYILRADEKTLFCG---AVSMGNPHVVT-VVDDVNTTDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+L Sbjct: 235 LLDENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQL 274 >gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] Length = 269 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 35/291 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D I A A+ + +T LI D Sbjct: 2 TTKIKFTKMHGAGNDYIYVD--ATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172 ++VDMG P ++ + G + PF VSMGNPH + FVE Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +L G L HP+F + N+ A++ + +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 -DITRINLPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA+ T R V M GG + IEW + + H+ MTG A K ++G+++ K Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268 >gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7] gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7] Length = 277 Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 21/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEGIGN + D G + I D + D HF D +++I D Sbjct: 5 FTKMEGIGNDYIYFD--GINQEIPMDKEFIMKISDR-HFGIGSDGMIVI--LPSDQYDFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE CGNG+RC +F+ + ET G+ + DG Sbjct: 60 MRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P+L + IP + +KM + IG + +SMGNPH + FV D L Sbjct: 120 VNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVSD-LDT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 175 LDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACY 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ D + M+G A + G + I Sbjct: 235 LNHYTDSKVTVELLGGCLEIEYVDET-IMMSGPAANVFNGTIKI 277 >gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7] Length = 276 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A + FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 122 PP----RFVPEEIPFEAAEQATCYTVDVDGQSIEM-AAVSMGNPHAVLRV-DDINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 274 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 16/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCL 239 G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V + G L Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 +T V V++ GG L I W +FMTG A ++G Sbjct: 235 AET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 270 >gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] Length = 289 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 140/292 (47%), Gaps = 19/292 (6%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM G GN +V+D +T + AL+ + HF DQ++L+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ + S E ++ +G + V Sbjct: 60 DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVV 119 Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P+ + +P A D + D PVN + R VVSMGNPHA+ V DD Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W+ + + M G A +EG +++ Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902] gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902] Length = 355 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 17/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R G D ++ N + + F D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E + CGNG+RC+ R+L + ET G++ + +G Sbjct: 60 DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119 Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG P L+ IP + R I V N V MGNPH + VED Sbjct: 120 LRVDMGAPFLESASIPTTLEPLAGLPRGALEIDGVPL----NVASVGMGNPHVVVPVED- 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L +G L HP+F N+ +V + + L++R WERG G T ACG+ ACA++V Sbjct: 175 LSRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 A+ L + V + GG LLI W + V MTG A+ ++G Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDG 278 >gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121] gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121] Length = 269 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 135/275 (49%), Gaps = 14/275 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68 M G+GN +V+D D I L D +T FDQ++++ + +D RI N Sbjct: 1 MHGLGNDFVVVDAVSRKVYFNKDMIARLG-DRHTGIGFDQLLVVEPPTNPDMDFRYRIFN 59 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 CDG+EV+ CGNG RC F+ + + ET G + + +G ++VDMG P + Sbjct: 60 CDGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFE 119 Query: 127 WKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +P F F+ PV + P VS+GNPHA+ V D+L + G Sbjct: 120 PADLP----FTGTANGAFYDIPVAGESYPITP--VSVGNPHAVHKV-DELSDEYVERIGE 172 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H +F VN+ ++ S ++LR +ERGVG T ACG+ CA+VVA Sbjct: 173 AIESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAK 232 Query: 246 VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V +LGG L IEW + + MTG K +EG++ Sbjct: 233 VKANLLGGELTIEWQGEGQPILMTGPTAKVFEGQI 267 >gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens] Length = 311 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 137/289 (47%), Gaps = 20/289 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65 F+K +G+GN L++D R S A A D N D ++ + ++ + D + Sbjct: 27 FSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGENGA-DFKMT 85 Query: 66 IINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGILVAKENRDGSISV 118 I N D SE + CGNG+RC+ R+L + FT T G +V DG I+V Sbjct: 86 IYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLITV 145 Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEP L +P A + DR G + VSMGNPH++ FV DD Sbjct: 146 DMGEPELAGPKVPCALAPTDGDRVVDAALEAGGATYAVT----AVSMGNPHSVAFV-DDA 200 Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL G + + F E VN V +++ WERG G+T ACG+ ACA V Sbjct: 201 KAVDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGV 260 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 A +T+R V + GG L IEW + +N V+MTG A+ + G + Sbjct: 261 AGVLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGSAPLP 309 >gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] Length = 283 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 27/291 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + ++ + I L +D HF D ++LI + A DA Sbjct: 3 FTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDR--HFGIGGDGLILITPSEVA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDG---SIS 117 +R+ N DGSE + CGNG+RCV +++ K+++ ET G+L + E +G + Sbjct: 59 MRMFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL+ K IP + + + I + + VSMGNPH + FVE Sbjct: 119 VNMGQPILEGKKIPTIFDSNPVVNQKIEIAGQSF----DVTCVSMGNPHCVIFVEKATDE 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + + F VN+ V S + RTWERG G T ACG+ A A VA Sbjct: 175 LVL-KIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287 +T R + +LGG L +EW++ +N V+ TG G ++ TG+W+ Sbjct: 234 LTGRTKRKILNHLLGGDLQLEWNEADNCVYKTG-------GATEVFTGEWM 277 >gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] Length = 279 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 141/288 (48%), Gaps = 23/288 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59 ++F KM GIGN + ID C DA + H+ D I+LI + A Sbjct: 3 LNFTKMHGIGNDYIYID---CFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113 D +R+ N DGSE + CGNG+RCV ++ K ET+RG+L A K + Sbjct: 59 -DVTMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S+ ++M PIL+ IP + + + F VSMGNPH + FV D Sbjct: 118 DSVEINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYFT----CVSMGNPHCVIFV-D 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + + G+ + +PMF N+ +V + + RTWERG T ACG+ A A Sbjct: 173 DVKNMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVC 232 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA +T+ + +LGG L++ + DNN VFM GEA+ + G +++ Sbjct: 233 VAGFISKRTDNIILNHLLGGDLILTYKDNN-VFMKGEARYAYRGYVEL 279 >gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto Rico] Length = 265 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + + D DQ++ I D D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG LL EW ++ + + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 265 >gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] Length = 271 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 144/280 (51%), Gaps = 18/280 (6%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI + D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKADFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123 DGSE CGN RC+ +++ +++ T ET+ GI + K + + ++VDM Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDM--- 115 Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D L+ +R + D V+ + FV MGNPH + F+ DD+ + +L + Sbjct: 116 --DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DDIKNVNLPA 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F + N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK Sbjct: 172 IGPKLENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKA 231 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 232 GRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] Length = 280 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 148/281 (52%), Gaps = 16/281 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +DF KM G+GN + I D G + T+ A + D +++I D + A D + Sbjct: 1 MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSIS 117 RIIN DGSE + CGNG+RC +++ + +++K FT ET GI+ V +N+ I+ Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG P + IP+ + ++ + + N + MG PH + +V DD+ Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGENWKVTS----LLMGVPHTVTYV-DDVDT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G L KH F + N++ A+ ++ +RTWERG G T ACG+ +C+ VAS Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 +T R V +++ G L IE+ ++ +V+MTG A + G Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTG 274 >gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 282 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 146/282 (51%), Gaps = 21/282 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ G + I + + A+ D HF D ++LI+ + A D Sbjct: 3 FTKMQGLGNDYVYVN--GFTERIENPSEVAVKVSDR-HFGIGSDGLILINPSKVA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNGMRCV +++ + ET+ GI L + + + Sbjct: 58 MEMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P L LIP+ + + + + + VSMGNPH + ++ DD+ H Sbjct: 118 VDMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYM-DDIEH 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N A V +++ +R WERG G T ACG+ ACA V+S Sbjct: 173 LDIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+V++LGG LLI+W + + V+MTG A+ ++G+ Sbjct: 233 LNGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGE 274 >gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans] Length = 276 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 15/281 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID + T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDMG PIL Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120 Query: 128 KLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P L ++ I H V+SMGNPHA+ V D H + Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGETHWI----SVLSMGNPHAVQVVA-DADHAPVR 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 176 EDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+ GG L I W DN+ V +TG A +EG++++ Sbjct: 236 LASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276 >gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 274 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 152/287 (52%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VI+ +N+ + D HF D ++++ D Sbjct: 3 FTKMHGLGNDFIVIE---ALENVDYSELAIKLCD--RHFGIGADGLLVVE--PSGIADIR 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSIS 117 +RI N DGSE + CGNG RC +++ R +K++ ET+ G+++ + EN + S+ Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVK 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174 V M PI + IP+ K D+ +F PV ++ V G PH I FVE Sbjct: 116 VYMSNPIFEASKIPI-----KSDKQKFINEPVKIDGKVYKLTSLRV--GVPHTIVFVES- 167 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS V Sbjct: 168 LDENMIKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAV 227 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS L KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 228 ASAVLGKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR] gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR] Length = 275 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 11/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F+KM G+GN +V+D + + D I + D +T FDQ++L+ D +D Sbjct: 2 LLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWA-DRHTGIGFDQMLLVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++VDM Sbjct: 61 HYRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP+ + P A F ++ ++ V + V+ +GNPH + V D++ + Sbjct: 121 GEPLFE----PAAVPFKAQKAEQTYVLRVKEETVLC-GVLGLGNPHCVIAV-DNVDTTPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LA H F E VN+ + S + + LR +ERGVG T ACGS ACA+ VA Sbjct: 175 ETLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V + GG L+I W V MTG A+ ++G++ Sbjct: 235 LLNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273 >gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] Length = 271 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 39/290 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R + AI D ++LI A D Sbjct: 2 TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119 Query: 116 ISVDMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMG P +DW K P + VSMGNPH + F Sbjct: 120 VTVDMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTF 156 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + DD+ +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ AC Sbjct: 157 I-DDITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGAC 215 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 A+ VA+ R V M GG + +EW + + H+ MTG A K ++G++ Sbjct: 216 ATAVAAFINGLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265 >gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22] gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22] Length = 271 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 137/287 (47%), Gaps = 39/287 (13%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D R + AI D ++LI A D + Sbjct: 5 IKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGNG RCV +++ + T +T+ GI + K +G +++V Sbjct: 63 RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVSTVTV 122 Query: 119 DMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 DMG P +DW K P + VSMGNPH + F+ D Sbjct: 123 DMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTFI-D 158 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 DITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATA 218 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 VA+ R V M GG + IEW + + H+ MTG A K ++G++ Sbjct: 219 VAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591] gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591] Length = 274 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 22/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP------FVVSMGNPHAIFFVEDDLY 176 P + + +P F + ++ +I LR VVSMGNPH + VE ++ Sbjct: 121 PNFEPQQVP----FRAVKPEKTYI-------LRAAERTVLCGVVSMGNPHCVLQVE-NVD 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 169 SASVEELGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V++ GG L I W +FMTG A ++G Sbjct: 229 IQQGLLAADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDG 270 >gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] Length = 284 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 151/281 (53%), Gaps = 24/281 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60 + F KM GIGN + +D+ N D L+ N H D +++I + A Sbjct: 3 IAFTKMHGIGNSYIYLDLF--QHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDG 114 D +R+ N DGSE +CGNG+RCV +++ R ++++ T ET GI++A+ +NR Sbjct: 59 DCGMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVI 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG+P+L K IP+ + +++ + P L + F +GNP+A+FFV + Sbjct: 119 EVIVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLVTALF---LGNPNAVFFV-NA 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L + G++ A F N+ + ++L WERG G+T ACG+ ACA+VV Sbjct: 175 IEQAPLRTLGDI-ANDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVV 233 Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 A+ G K V V++ GG L+I W DN+H++M G A+ Sbjct: 234 AAILNGFCQKGEEIV-VQLSGGDLVIRWADNDHIWMRGPAE 273 >gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] Length = 281 Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 17/283 (6%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+GIGN + I+ M N A++ +D + LI D +++ Sbjct: 5 FYKMQGIGNDYVYINAMETKVPN--PSALSKTVSDRHFGIGSDGLILLLPSTVADVRMQM 62 Query: 67 INCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDM 120 N DGSE + CGNG+RCV + + K +S T ET+ GI L ++ + S+ VDM Sbjct: 63 FNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSVCVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P ++ + IP+ + +M + + + VSMGNPHA+ F D + +L Sbjct: 123 GSPSMEIEKIPVRYTERRMVEAPLTVNGTTY----SVTCVSMGNPHAVIFT-DGIDEMEL 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G H +F E VN L +R WERG G T ACG+ ACA VVA+ Sbjct: 178 EKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAACLTK 237 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + R V V + GG L I W DN+ V+MTG A+ + G ++I Sbjct: 238 RCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279 >gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 282 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 144/291 (49%), Gaps = 31/291 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F KM G+GN +VID + S I A + D +T FDQ++L+ D Sbjct: 4 LKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWA-DRHTGIGFDQLLLVERPTSEQADFR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++V+MG Sbjct: 63 YRIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMG 122 Query: 122 EPILDWKLIPL---------ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +P IP +D ++D +G VN MGNPHA+ V Sbjct: 123 QPRFRPSEIPFLPLENTSGETLQYDVRLDGGNVTVGCVN-----------MGNPHAVLTV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E+ +A G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA Sbjct: 172 ENT-ESAAVAELGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACA 230 Query: 232 SVVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V +G L + + V + GG LLI W VFMTG A+ +EG+L Sbjct: 231 AAVYGVRAGWLDE-GEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280 >gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E] gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E] Length = 274 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG I V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120 Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ + IP +A F+K R I V VSMGNPH V DD+ ++ Sbjct: 121 PVWEPAKIPFIANKFEKNYILRTDIQTVLC------GAVSMGNPHCTLVV-DDVETANVT 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN+ +V + + LR +ERG G T ACGS ACA+ Sbjct: 174 ELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274 >gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400] Length = 282 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 143/289 (49%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + ++ C + + N +F D ++LI A D Sbjct: 3 FTKMHGAGNDYVYVN---CFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116 +R+ N DGSE + CGNG+RCV ++ + +K T ET G+L + + R + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLR-NPFVVSMGNPHAIFFVEDD 174 V+MG+P L IP+ D +G P+N L N VSMGNPH + FV DD Sbjct: 118 RVNMGKPRLTRAEIPMLGD----PGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFV-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + ++ + +G L+ H MF N+ ++ S + RTWERG G T ACG+ A A V Sbjct: 173 VENFQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A T + + + GG L +EW ++ ++MTG A + + G++++ T Sbjct: 233 AGALNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGT 281 >gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 276 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + +P F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] Length = 274 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 4/260 (1%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA + N Sbjct: 7 KMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVEFFNS 64 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGNG RCV L+ +K T T G L +K + + ++G P ++W+ Sbjct: 65 DGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKVNWQE 124 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL++ D D + I N+ +++GNPH IFFV DD+ +DL + G + Sbjct: 125 IPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGPKIEN 182 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + ++ Sbjct: 183 HPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTDIE 242 Query: 250 MLGGGLLIEWHDNNHVFMTG 269 + G L I + N + M G Sbjct: 243 FVLGSLTISIDERNSIHMKG 262 >gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] Length = 284 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 19/277 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 +R+ N DGSE ++CGNG+RCV ++ + + F ET+ G++ A + G+ ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG PIL + IP+ S D++ + G L+ VSMGNPH +F+V +D+ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER---LKGT-AVSMGNPHVVFYV-NDIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237 Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEA 271 KT + V + GG L I W + +V MTG A Sbjct: 238 VLNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPA 274 >gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] Length = 280 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 140/293 (47%), Gaps = 33/293 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S+ F+KM G+GN +V++ + I AL+ FDQ+++I DA+ D Sbjct: 2 SIRSFSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDY 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR------------MKRKSFTFETIRGILVAKE 110 RI N DGSEV+ CGNG RC ++L +KR S T I Sbjct: 62 AYRIYNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSIT------IAYVGT 115 Query: 111 NRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHA 167 + DGS VDMGEP D+ F +R + PV+ +VSMGNPHA Sbjct: 116 DSDGSEQYRVDMGEP--DFT------PFTPAQTERLY-QPVSAAGETLEMGIVSMGNPHA 166 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + V DD+ +A+ G L +HP+F VN ++ + LR +ERG G T ACG+ Sbjct: 167 VCVV-DDVATAPVAAVGAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGT 225 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 ACA+V +R V V++ G L I+W ++MTG A + G+L Sbjct: 226 GACAAVAVGIMRGLLDREVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278 >gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] Length = 282 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 144/286 (50%), Gaps = 18/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +++ +++ + + HF D ++L+ + A D Sbjct: 3 FYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--DLK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117 +RI N DGSE + CGNG+RC + + + ET+ GI+V + ++++ I Sbjct: 61 MRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSLIR 120 Query: 118 VDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG P L + IP+ D + R I N N VSMGNPH + F++ D+ Sbjct: 121 VNMGTPNLKPESIPILGFEGKDSVINQRIQI---NDKTFLNVTCVSMGNPHCVIFMDYDI 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ + + F + N+ ARV S ++LR WERGVG T ACG+ ACA+ VA Sbjct: 178 KNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATAVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + TN V++ + GG L IE+ NN VFMT A +EG ++I Sbjct: 238 AKLNGFTNGNVNIHLPGGILHIEYETNN-VFMTATATLVFEGIIEI 282 >gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642] Length = 276 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 144/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPEEIPFEAAEQASCYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 276 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 144/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPEEIPFEAAEQATCYTVDVDGQHV-DMAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] Length = 288 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 153/289 (52%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62 F KM G+GN + ++M + I + ++ ++ ++ NT D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 63 -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121 Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L +P L R+ F NH + VSMGNPHA+ FV DD+ Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYN--NHRYAFT--AVSMGNPHAVIFV-DDV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] Length = 277 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 13/278 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN +V++ + + A N D ++ + A V +RI Sbjct: 3 FVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRADVQ--MRIF 60 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDMG 121 N DGSE + CGN +RCV ++ R ++R+ ET+ G+ L +R ++VDMG Sbjct: 61 NADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EPIL+ IP+A + R F VSMGNPHA+ FV DD+ D+ Sbjct: 121 EPILEPGRIPVALAEGGTPSGRVEAAGREWAFT----AVSMGNPHAVIFV-DDVEGTDVR 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + + +F VN+ + +R WERG G T ACG+ ACA+VVA + Sbjct: 176 GVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALEGR 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + R V V + GG L IEW ++ V+MTG A + + G++ Sbjct: 236 SGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273 >gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] Length = 289 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + ++ C + N +F D +++I+ A D Sbjct: 15 FTKMQGLGNDYVYVN---CFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA--DFE 69 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ +++ + ET+ GI L ++ + + Sbjct: 70 MEMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKVKLVK 129 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L + IP+ +++ + ++ + VSMGNPHA+ +VED + Sbjct: 130 VDMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVED-VKG 184 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G H F VN +V ++++R WERG G T ACG+ ACA VA Sbjct: 185 LDIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVAVACI 244 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG L IEW + + ++MTG A+ ++G++++ Sbjct: 245 LNGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289 >gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] Length = 295 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 17/270 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIH----DFQDASVDA 62 F KM G+ N +++D R D + ST+ +Q++ I + + A A Sbjct: 19 FVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAYA 78 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG EV +CGN RC+ L + + ET G+L + ISV +G Sbjct: 79 TMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLGP 138 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++W+ +P +R D + HI P+ L + + +GNPH +FFV D L H D+ Sbjct: 139 ISVNWQQLPTSREVDTL-----HI-PLKSGPLSDGVALYIGNPHVVFFV-DRLVHDDIPL 191 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239 F + P+F EGVN+ +A V S+ L WER LT ACG+ AC + A+ G + Sbjct: 192 FAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGFV 251 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 + T V V + G L IE +++ V MTG Sbjct: 252 NSTK--VKVYLPAGELQIELIEHDMVVMTG 279 >gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] Length = 277 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + + T AI D ++++ + D +RI Sbjct: 3 LTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSNTCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVDM 120 IN DGSE + CGNG+RC ++ + + +FT ET+ G+ L + ++VDM Sbjct: 61 INSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G+P + K IP+ + DK +D D VN + V+ +G PH FV DD+ Sbjct: 121 GKPFFNSKDIPMNVTMDKVIDVDL----DVNGETVTVSSVL-LGVPHTEVFV-DDITKAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS + S Sbjct: 175 VTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHEK 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146] gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146] Length = 274 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 131/277 (47%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + FAKM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQLLVVEPPYDPDLDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + R+ T + D ++V+MG Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + IP F ++ +I V + VSMGNPH + VED + + Sbjct: 120 EPQFEPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-ISRAQVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 174 LLGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + V V + GG L I W + MTG A ++G Sbjct: 234 LDEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDG 270 >gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b] gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b] Length = 274 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P R+ + + +F VSMGNPH + VE ++ + + Sbjct: 121 PNFEPQHVPF-RANKAENLYLLRVAEQTVMF----GAVSMGNPHCVIQVE-NVKTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W +FMTG A ++G Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDG 270 >gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11] gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11] Length = 261 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 126/241 (52%), Gaps = 13/241 (5%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101 FDQ++++ D D RI N DGSEV+ CGNG RC RF+ RMK + S + T Sbjct: 29 FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKTSISVST 86 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 +G ++ K D I+V+MGEP+ + IP F ++ ++ V+ L + VS Sbjct: 87 KKGKMILKVEDDDQITVNMGEPVFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVS 141 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + V DD+ YD+ +G L+ H F E VN ++ S + LR +ERG G Sbjct: 142 MGNPHCVT-VVDDVDAYDVDKYGPLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGE 200 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 T ACGS AC +V V V + GG L I W + +FMTG A ++G+L Sbjct: 201 TQACGSGACGAVAVGIMQELLGEEVKVSLPGGDLYIVWQGSGKPLFMTGPATHVYDGQLS 260 Query: 281 I 281 I Sbjct: 261 I 261 >gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82] Length = 274 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC F L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V++ GG L I W H ++MTG A ++G Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270 >gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] Length = 279 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN +VID + ++++ I L+ DQ++++ D Sbjct: 3 VRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS-FTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGNG RC RF+ R+ K + G++ DG I +MG Sbjct: 63 HIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI +P FD + V+ L V+SMGNPHA+ VE+ + +AS Sbjct: 123 PIFTPSAVP----FDTDKEQLEYTLTVSDTSLAM-GVLSMGNPHAVIIVEN-VQTAPVAS 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F++ VN+ ++ S + + LR +ERG G T ACG+ ACA+VV + Sbjct: 177 LGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKNLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 N AV+V + GG L I W N +++G +EG +++ Sbjct: 237 NNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276 >gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 271 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 141/287 (49%), Gaps = 27/287 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASV 60 +++F KM G+GN +++D ++ I L+ N H FDQ++L+ +V Sbjct: 2 LINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLA---NRHLGIGFDQLLLVETSNTKNV 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG EV+ CGNG RC F++ + ET GI+ N D ++ V Sbjct: 59 DFRYVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRV 118 Query: 119 DMGEPILD----WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 DMG+P + L+P ++ +++ F +G VS+GNPH + VED Sbjct: 119 DMGKPSFNPADILLLVPQQSTYYQIEG--FDLG-----------AVSIGNPHCVMLVED- 164 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D++S + + + N+ ++ + ++LR +ERG G T ACGS ACA+VV Sbjct: 165 VNTVDVSSIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVV 224 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG LIE+ HVF++G + +EGK++I Sbjct: 225 YGVEQGLLKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271 >gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] Length = 274 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 4/260 (1%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA I N Sbjct: 7 KMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIEFFNS 64 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGNG RCV L+ +K T T G L +K + + ++G P ++W+ Sbjct: 65 DGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKVNWQE 124 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL++ D D + I N+ +++GNPH IFFV DD+ +DL + G + Sbjct: 125 IPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGPKIEN 182 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + ++ Sbjct: 183 HPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTDIE 242 Query: 250 MLGGGLLIEWHDNNHVFMTG 269 G L I + N + M G Sbjct: 243 FALGSLTISIDERNSIHMKG 262 >gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103] gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103] gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355] Length = 282 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P R+ + + +F VSMGNPH + VE + Sbjct: 129 PNFEPQQVPF-RANKAENLYLLRVAEQTVMF----GAVSMGNPHCVIQVEST-KTAQVEL 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ + S E + LR +ERG G T ACGS ACA+V Sbjct: 183 LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 242 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ++ V V + GG L I W ++MTG A ++G Sbjct: 243 SQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDG 278 >gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] Length = 281 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 135/283 (47%), Gaps = 17/283 (6%) Query: 8 FAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 F KM G+GN +VID + + +D I L+ FDQ++++ Q D Sbjct: 5 FTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GDAD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI+N DGSEV CGNG RC RF+ + +KS ET G + D I+VD Sbjct: 64 FRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQITVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178 MG P IP+ K + D + + V+ + V +GNPH VE+ D Sbjct: 124 MGAPRWAPDAIPMTA---KAEADNYFL--VSGTQAWDVGAVGLGNPHCTLLVENVDTAPV 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D + G LL H F E N+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 179 D--TVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQR 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L + + + MTG A ++G ++I Sbjct: 237 RDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEI 279 >gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] Length = 284 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 19/277 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 +R+ N DGSE ++CGNG+RCV ++ + + F ET+ G++ A + G+ ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG PIL + IP+ S D++ + G L+ VSMGNPH +F+V +++ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER---LKGT-AVSMGNPHVVFYV-NNIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237 Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEA 271 KT + V V + GG L I W + +V MTG A Sbjct: 238 VLNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPA 274 >gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont] Length = 274 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/277 (33%), Positives = 130/277 (46%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D + +PL A + + R + +F VSMGNPH + VE + + Sbjct: 121 PNFDPQQVPLRANKAENLYLQR--VAEQTVMF----GAVSMGNPHCVIQVE-SVKTAAVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 174 TLGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGI 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W +FMTG A ++G Sbjct: 234 LAVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDG 270 >gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] Length = 270 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 35/286 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D AI D ++LI + A D + Sbjct: 5 IKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE CGNG RCV +++ + T +T+ GI + K + +G +++V Sbjct: 63 RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVTAVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P+ G V H + PF VSMGNPH + FV DD+ Sbjct: 123 DMGSPL--------------------ETGEV-HFEDKYPFRSTRVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L H +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TQINLPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + T R + M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 221 AFINELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIE 266 >gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] Length = 282 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 32/292 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + +D H + A +A T + D ++LI A D Sbjct: 5 IKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGS--DGLVLIGSSDKA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE + CGN RC+ ++L + +T+ GI L + + S+ Sbjct: 61 SMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNSV 120 Query: 117 SVDMGEPI-----LDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG P D K P+ ++D +R+ +G VSMGNPH + F Sbjct: 121 TVDMGIPADEPADYDGKGAKPMKEQPIEVDGERY-VGTT----------VSMGNPHLVIF 169 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V +D+ DL G L HP+F +N+ A++ + +R WERG G+T ACG+ AC Sbjct: 170 V-NDIEAIDLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGAC 228 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A+ VA+ + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 229 ATAVAAFLTGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] Length = 281 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] Length = 278 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + +D C + + N +F D ++LI A V Sbjct: 3 FTKMHGAGNDYVYVD---CFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHVR-- 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116 +R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + N+ + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175 V+MG+P L IP++ D R P+N L N SMGNPH + FV DD+ Sbjct: 118 RVNMGKPRLTRGEIPMSGPADA----RVVSEPLNILHTTFNITCASMGNPHCVIFV-DDV 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 173 DNFQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T++ + + GG L +EW ++ ++MTG A + + G++ I Sbjct: 233 GALNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278 >gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. B076] gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 276 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917] gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917] Length = 360 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 136/299 (45%), Gaps = 42/299 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIH 53 M+ F+K +G+GN ++++ R + A+ D ++ +++ Sbjct: 1 MLQFSKYQGLGNDFILLEGR------SGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVA 54 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKE 110 A+ + +RI N DGSE + CGNG+RC+ RFL +++ ET G+++ Sbjct: 55 LPPAAAGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFD---------KMDRDRFHIGPVNHLFLRNPFVVS 161 DG I VDMG P L + +P A ++D R + Sbjct: 115 LADGQIQVDMGRPFLQPEQVPTALPVGAAGLPQGEVELDGRRLALA-----------AAG 163 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + V DDL +G L P+F N+ +V S L +R WERG G Sbjct: 164 MGNPHVVVTV-DDLDQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGP 222 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++VA+ L V + GG L I W D + + MTG A+ ++G L Sbjct: 223 TLACGTGACATLVAAHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281 >gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 251 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 21/264 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN ++ID R ++ N D DQ+++I + + F+ I N D Sbjct: 1 MHGTGNSFVIIDSRSANN----LDWNYRQIADQGSCDQVIIIT--MSNAANCFMHIYNAD 54 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-ILVAKENRDGSISVDMGEPILDWKL 129 GS + CGN RCV + + T E I IL + D SI V+MG+P+L W Sbjct: 55 GSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWNE 114 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D + P+ L+ P V++GNPH +FFV D++ L + G L Sbjct: 115 IPLSCECDPLYL------PIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLGPKLEN 167 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTNRAV 246 H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS CL + Sbjct: 168 HELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCL--ATKQT 225 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGE 270 SV + GG LLIEW N + MTG+ Sbjct: 226 SVHLPGGHLLIEWSKN--ILMTGD 247 >gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 276 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 143/283 (50%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G P + IP ++ + R + G L VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFAPEDIPF-QAAQQATRYSVEVDGQTVELA-----AVSMGNPHAVLRV-DDINNAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 174 VHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQ 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 234 GWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] Length = 273 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 140/285 (49%), Gaps = 25/285 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62 F KM+G GN +VID R DN L N HF D I+++ + A + Sbjct: 3 FIKMQGTGNDFVVIDDR---DNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQIKM 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116 I IN DGS CGNG+RC +++ + +K ET GI L + + + Sbjct: 60 II--INSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++DMG P D K IP+ S D++ + I + + MG PH + F DL Sbjct: 118 TIDMGTPSFDPKKIPV-NSCDEVVKKELKINEKTYSITS----MFMGVPHTVIF--GDLE 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 YD+ G + K+ +F EG N++ V + + + ++TWERG G T ACG+ CA VAS Sbjct: 171 KYDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVAS 229 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T V + GG L IE D N VFMTG A+ ++G+ DI Sbjct: 230 NKLGFTEGKVKAHVPGGILFIEVKD-NKVFMTGPAEVSFKGEYDI 273 >gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 276 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAPEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5] Length = 276 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] Length = 281 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 147/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVAEQPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N] gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F KM G GN +V+D ++T + AL + HF DQI+L+ D Sbjct: 10 NFTKMHGAGNDFVVLDGVRQTIDMTPERARALG---DRHFGVGADQILLVEPATRPDADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + + E + G++V E D ++V+M Sbjct: 67 RYRIFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEM 126 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G D +P + + +D ++ P+ + V++ NPHA+ V D + Sbjct: 127 GTTRFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIELS-AVAISNPHAVQVVAD-VDQ 184 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G + HP F+ VN ++ ++ LR +ERG G T ACG+ ACA+V A Sbjct: 185 APVSEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGI 244 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V+ GG L I W + + MTG A+ + G++DI Sbjct: 245 RRGLLDSPVRVQTRGGALTIAW-NGEQLRMTGPAESVFSGQVDI 287 >gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str. 1704B] Length = 276 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WLDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] Length = 281 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 21/287 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G GN + +D + + ++ + +T L+ + D +R Sbjct: 5 IKFTKMHGAGNDYIYVDTT-QYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKADFSMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSISV 118 I N DGSE CGN RC+ ++L K+ T +T+ GI VA + + +++V Sbjct: 64 IFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVNTVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175 DMG P + P+ ++D P+ L +V VSMGNPH + FV +D+ Sbjct: 124 DMGIPADE----PV--NYDGNGAKPMKEQPI--LIEGKRYVGTTVSMGNPHIVIFV-NDI 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DLA+ G + HP+F +N+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 175 TDTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATAVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + R + M GG + I+W + HV MTG A K +EG++++ Sbjct: 235 AFLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281 >gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Virginia] Length = 265 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 130/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + + D DQ++ I D D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P+ P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKV------PLLVPKYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG LL EW ++ + + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 265 >gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056] gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058] gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059] gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] Length = 281 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] Length = 291 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 138/290 (47%), Gaps = 17/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G GN +V+D +++ L+ + HF DQI+ + +D Sbjct: 3 IPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLA---DRHFGVGADQILTVRPSPAPGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG+EV+ CGNG RC RF+ + + + +T G++ + N DG ++V+ Sbjct: 60 FEYLIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVN 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPV-----NHLFLRNPFVVSMGNPHAIFFVED 173 MG P+ + IP A + P+ H VVSMGNPHA+ V D Sbjct: 120 MGAPVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVV-D 178 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L+ H F + VN ++ + LR +ERG G T ACGS ACA+V Sbjct: 179 DVDTAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAV 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 VA L + V V+ GG L I W V MTG A + G++++ Sbjct: 239 VAGIRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288 >gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 284 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 134/285 (47%), Gaps = 15/285 (5%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V++ + IT + AL+ DQI+L+ D RI N Sbjct: 1 MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG EV+ CGNG RC VRF+ + + E +L K + DG + VDMG PI D Sbjct: 61 ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120 Query: 127 WKLIPL-ARSFDKMDR--DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181 LIP A M + + P++ + V +SMGNPHA+ V D+ + Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVV-GDVDSAPVL 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + +HP F VN+ +V + + LR +ERG G T ACG+ ACA VV+ Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG+ +I Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284 >gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 276 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPDEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] Length = 279 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/283 (34%), Positives = 141/283 (49%), Gaps = 12/283 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++M+ F KM+G GN +VID ++++D I L+ FDQ++L+ A D Sbjct: 2 ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVES--SAVAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC VRF+ + +++ + ET GI+ K G ++V+ Sbjct: 60 FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P IP F + VN N VSMGNPHA+ V DD+ Sbjct: 120 MGAPRFKPDAIP----FVAASAATHYALEVNDQAF-NIAAVSMGNPHAVLTV-DDVETAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + HP F E VN+ +V + LR +ERG G T ACG+ ACA+ V Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + V V GG L I W + V MTG A + G++D+ Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDL 276 >gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218] Length = 276 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 146/284 (51%), Gaps = 26/284 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I ++ D +T FDQ++++ D D R Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSPELIRRMA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ RMK + S + T +G +V D I+V+MG Sbjct: 64 IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP F ++ +I V LF VSMGNPH + V DD+ + Sbjct: 122 VPEFEPSKIP----FRAKQAEKTYIMRVEEQTLFCG---AVSMGNPHVVT-VVDDVTTAN 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236 + + G LL H F E VN +V + ++LR +ERG G T ACGS AC +V V Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQ 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 G L T V+V + GG L I W ++MTG A ++G+L Sbjct: 234 GLLDDT---VTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQL 274 >gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 276 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 142/288 (49%), Gaps = 24/288 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPTNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P + IP A S+ ++D + VSMGNPHA+ V DD Sbjct: 121 GPPRFAPQEIPFQAAEQASSYSVELDGQTVELA-----------AVSMGNPHAVLRV-DD 168 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + + G + HP F VN+ V + LR WERG G T ACG+ ACA+ V Sbjct: 169 INNAPVHELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAV 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 A+ + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 229 AAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] Length = 284 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 19/282 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + + A+ S D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSI---SV 118 RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A+ + DG + +V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVTV 123 Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L +P L ++ + G L+ VSMGNPH +F +ED + Sbjct: 124 DMGEPRLTKAELPMLGGGEEQTINETMTFGEAE---LKGT-AVSMGNPHIVFPIED-IEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + K + ++V + GG L+I W +N HV MTG A+ EG Sbjct: 239 LNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEG 280 >gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354] Length = 269 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 17/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +++D R ++ + I AL+ FDQ++++ +A D Sbjct: 3 LPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--DLA 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DG EV++CGN R V + + + + T G L + + + + MG Sbjct: 61 MRIHNADGGEVEACGNATRAV-----AVLHGQPASIATAGGTLRVRPGENMAEAA-MGRA 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W+ IPLA + D + P+ L P V++GNPH +FFV DD L + Sbjct: 115 RFHWQDIPLAYAMDTREM------PLGWDMLERPSAVNVGNPHIVFFV-DDARAVPLETL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+ + + Sbjct: 168 GPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGLVD 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I + + M G A + + G ++ Sbjct: 228 AEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFEL 265 >gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] Length = 274 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 10/276 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V++ GG L I W +FMTG A ++G Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 270 >gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] Length = 269 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ I+V Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ H Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDHV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] Length = 288 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 32/298 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-----DQIMLIHDFQDASVDA 62 F KM G+GN+ + ++ + + + + ALS + + F D ++LI A D Sbjct: 3 FTKMHGLGNQYIFVNQ--FEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA------KENRDG 114 +RI N DGSE ++CGNG+RCV ++ + + S T ET+ GI+ A + N Sbjct: 59 QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118 Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P L+ K IPL + ++ + H VSMGNPHA+FFV + Sbjct: 119 RVTVDMGVPRLEPKEIPLLGTEKTPVIKEGIEVDNARHEMT----AVSMGNPHAVFFV-N 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + L + G + KHP F + VN+ + S + R WERG G+T ACG+ ACA+V Sbjct: 174 SIENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAV 233 Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 VA+ K V V + GG L I W ++ V+MTG A+ I G++++K Sbjct: 234 VAAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAET-------ICIGEYVRK 284 >gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] Length = 268 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 145/285 (50%), Gaps = 28/285 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN + ++ M+ N +I D ++LI D A D + Sbjct: 3 IEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE + CGN RC+ ++L + +T+ GI L KE + S+ V Sbjct: 61 RIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESVRV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P D + L ++ R VSMGNPH + FV D + Sbjct: 121 DMGIPA-DIHWVDLGDAYP----------------FRKGVAVSMGNPHLVIFV-DKMEEV 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LA G +L +HP+F + VN+ A+V + E++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 163 ALAEVGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAAAF 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + +V M GG L I+W + H++MTG A K ++G +++K Sbjct: 223 SGQCGSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELK 267 >gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] Length = 276 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 139/280 (49%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + S T +G +V K + I+V+MG Sbjct: 65 FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I + LF VSMGNPH + V DD+ D+ Sbjct: 123 PEFEPSKIP----FKAKQPEKTYILRTDAHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V V++ GG L I W ++MTG A ++G+L Sbjct: 235 LLAENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQL 274 >gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae] Length = 269 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 133/274 (48%), Gaps = 16/274 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I LS FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF L ++ T G L + + V+MG P + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P F ++ +I + VVS+GNPH + VED + ++A G +L Sbjct: 121 NKVP----FKAQKSEKTYIIRTQQQTILCG-VVSIGNPHCVLQVED-IDTAEVALLGPML 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHKTNR 244 KH F E N+ +V E + LR ERGVG T ACGS ACA+V + G L K+ Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKS-- 232 Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W+ H +FMTG A ++G Sbjct: 233 -VRVDLPGGMLKIRWNGLGHPLFMTGPATHVYDG 265 >gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] Length = 284 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 147/285 (51%), Gaps = 19/285 (6%) Query: 7 DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + + ++ AI S D ++LI A V Sbjct: 5 QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPVK-- 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSI---S 117 +RI N DGSE ++CGNG+RCV +++ + +F ET+ G++ A + +DG + + Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P + + +P L + G N VSMGNPH +F++ED + Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFGTTT----LNGTAVSMGNPHIVFYLED-IE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 178 KAPLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K ++V + GG L+I W DN HV MTG A+ +G Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTF 282 >gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] Length = 306 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 134/296 (45%), Gaps = 18/296 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFD-----QIMLIHDFQDAS 59 + F KMEG GN + +D + I L+ + H+ ++++ S Sbjct: 11 IAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILPPTSPDS 70 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS-- 115 D +R+ N DGSE + CGN RCV RF + R ET+ GI + + D Sbjct: 71 ADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRVDDAGGC 130 Query: 116 ---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHAIFF 170 + VDMG P L + IP+ D + IG + R VSMGNPHA+ F Sbjct: 131 PSRVCVDMGTPELARQRIPVCPD-TASDPESPCIGQPIRVLDREWTMTCVSMGNPHAVVF 189 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ DL G HP F N ++ + +R WERG G T ACG+ AC Sbjct: 190 V-DDVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLACGTGAC 248 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 A VA T R V+V++ GG L I W + H+ MTG A+ + G+ G+ Sbjct: 249 AVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQGQ 304 >gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] Length = 274 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ + I + L VVSMGNPH + VED + ++ Sbjct: 121 PDFEPQHVP----FRAIKAEKTYIIRAIERTVLCG--VVSMGNPHCVIQVED-VDTAEVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 174 ILGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDL 233 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 N V V + GG L I W ++M G A +EG + + Sbjct: 234 LNSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274 >gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] Length = 318 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 23/289 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFIRI 66 F+K +G+GN +++D R + + + D N +I D +RI Sbjct: 34 FSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPPVGDTDLTMRI 93 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE + CGNG+RC+ +F++ + + T+ G++ + DG + VDMG PI Sbjct: 94 FNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQVRVDMGTPI 153 Query: 125 LDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF------VEDD 174 L+ +P + + + +D G + VSMGNPHA+ + ++ D Sbjct: 154 LEGPKVPTTLAPTQGSTVVQQDLVVEGKTYKVT-----CVSMGNPHAVIYSCDGEPIKID 208 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 +LA+ G ++ +F N V S + + WERG G T ACG+ ACA VV Sbjct: 209 DLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGACALVV 268 Query: 235 ASGCLH---KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 A G L N+ V + GG L IEW +NH++MTG A+ + G+L Sbjct: 269 A-GILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316 >gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 264 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 128/276 (46%), Gaps = 16/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+ ++ID RG + IT + AL F+Q++++ D D++ A + Sbjct: 3 LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + +CG+ R L S +T RG+ D S+SV+MG P Sbjct: 61 TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW+ IPLAR D + HL L P SMGNPH FFV DDL D+A+ Sbjct: 121 FDWQSIPLARELDSL-----------HLPLPGTPAACSMGNPHCSFFV-DDLAPLDIATL 168 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F N+ +V +++ LR WER + GS +CA+ V + Sbjct: 169 GPQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLD 228 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V GG + + W V + G + + G L Sbjct: 229 SPVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264 >gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] Length = 267 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ +K T +T GI V K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172 ++VDMG P L+ + + F PF VSMGNPH + FVE Sbjct: 120 VTVDMGSP-LETEAVDFGDQF--------------------PFQSTRVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + +L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 D-ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VA+ R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 276 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SV+M Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F D V L + VSMGNPHA+ V DD+ + Sbjct: 121 GPP----RFIPAEIPF-VADAQAPSYPLVVDGQLYSIAAVSMGNPHAVLRV-DDVSTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b] Length = 277 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 142/284 (50%), Gaps = 21/284 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61 + F KM G+GN +V+D +T + I L+ N H FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116 RI N DG EV CGNG RC+ F LT++ K T T+ +++ N D S+ Sbjct: 60 FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLII---NEDNSV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV+MG P L IPL + +N+ N +S+GNPHA+ VE+ + Sbjct: 117 SVNMGVPRLAPGEIPLLADRQSPEYSL----KLNNGNTVNLHAISVGNPHAVLLVEN-ID 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + S G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + Sbjct: 172 TAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + + ++V + GG L I+W + +TG A +EG L Sbjct: 232 RLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 259 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 127/258 (49%), Gaps = 11/258 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P F + ++ +I + H L VVSMGNPH + VE D+ + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F E N+ ++ ++ LR +ERG G T ACGS ACA+V Sbjct: 174 TLGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 Query: 242 TNRAVSVKMLGGGLLIEW 259 + V V + GG L I+W Sbjct: 234 LSANVRVSLPGGELDIQW 251 >gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] Length = 277 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + + T AI D ++++ + D +RI Sbjct: 3 LTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSDTCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120 IN DGSE + CGNG+RC ++ + +++FT ET+ GI+ + + +VDM Sbjct: 61 INSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+P + K +P+ DK+ D D VN + V+ +G PH +VED + Sbjct: 121 GKPFFNSKDVPMNVDMDKVIDVDID------VNGETVTVSSVL-LGVPHTEVYVED-ITK 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 173 APVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSF 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 233 EKGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276 >gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4] gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4] Length = 276 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 133/278 (47%), Gaps = 14/278 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC RF L + S + T +G + DG ++V+MG P Sbjct: 65 FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVPE 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F +++ +I LF VSMGNPH + V DD+ ++ + Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRTGEKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N ++ ++ LR +ERG G T ACGS AC +V Sbjct: 177 LGPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W +FM G A ++G+L Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQL 274 >gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 274 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F + ++ +I V + VVSMGNPH + V D + ++ Sbjct: 121 PEFEPHHVP----FRALRAEKTYILRVAERTVLCG-VVSMGNPHCVIQVPD-VETAEVDI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++MTG A ++G + + Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274 >gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900] Length = 281 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715] gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] Length = 281 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 147/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVAEEPKALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20] gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20] Length = 282 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 32/292 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + +D H + A +A T + D ++LI A D Sbjct: 5 IKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGS--DGLVLIGSSDKA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE + CGN RC+ ++L + T +T+ GI L + + S+ Sbjct: 61 SMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNSV 120 Query: 117 SVDMGEPI-----LDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG P D K P+ ++D +R+ +G VSMGNPH + F Sbjct: 121 TVDMGIPADEPADYDGKGAKPMKEQPIEVDGERY-VGTT----------VSMGNPHLVIF 169 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V +D+ L G L HP+F +N+ A++ + +R WERG G+T ACG+ AC Sbjct: 170 V-NDIEAIGLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGAC 228 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A+ VA+ + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 229 ATAVAAFLTGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] Length = 276 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +IT A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +L+P F ++ + V + + VSMGNPHA+ V +D+ + + Sbjct: 122 AP----RLVPADIPFQASEQAASYALDVEGQSV-DIAAVSMGNPHAVLRV-NDINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276 >gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166] Length = 276 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 138/282 (48%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ H +I A FDQ++++ Q+ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KRK ET GI+ DG I VDM Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRK-IKVETKGGIIELDIRPDGQIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + G L VSMGNPHA+ V D + + Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAVSMGNPHAVLRV-DSVERAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] Length = 290 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 148/295 (50%), Gaps = 22/295 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVID-MRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 M + + F KM +GN ++ID RG + + + + D N +I + Sbjct: 1 MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKIC-DRNFGVGGDGVIFVSKS 59 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111 ++D RI N DGSE + CGNG+RC +++ + +++K ET+ G L K N Sbjct: 60 DNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKNN 119 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIF 169 SI VDMG + IP+ +D+ I V L + + V++GNPH + Sbjct: 120 LVESIKVDMGLATFKSEKIPVK------TKDKTFINKVCKLNDKKIKLSAVNVGNPHTVI 173 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV++ Y G ++ HP+F E N++ +V + + + TWERGVG+T ACG+ A Sbjct: 174 FVDEVSRDY-AEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGA 232 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281 AS + L K N+ V+V + GG L IE ++ N+ FM G+A +EG L + Sbjct: 233 VASTIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGILSM 287 >gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] Length = 283 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 28/290 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM GIGN + +D G + +A + +D + L+ D + Sbjct: 3 INFTKMHGIGNDYVYVD--GFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIADFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN RC+ +F+ T +K+ + ET+ GI L ++ + + V Sbjct: 61 RMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYVEV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVED-D 174 DMG+ IL + IP+ D++ F P+ N ++ VSMGNPH + + ED D Sbjct: 121 DMGKAILSPQDIPVIS-----DQETFINTPISIDNEIYYGT--CVSMGNPHVVVYCEDVD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L L S G +P+F E +N ++ ++ +R WERG G T ACG+ ACA V Sbjct: 174 LLS--LESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACA--V 229 Query: 235 ASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A C+ K N ++VK+ GG L I + ++ V M G A K ++G ++ Sbjct: 230 AVSCVLNGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279 >gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] Length = 281 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 148/282 (52%), Gaps = 10/282 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I ++ FDQ++++ +VD Sbjct: 2 LLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R K+ +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNMG 121 Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P IP + F+ + + + N L+ VV+MGNPHA+ V D L D+ Sbjct: 122 YPKFMPHEIPFVTEEFEAL----YTLELANEQSLKID-VVNMGNPHAVTIVPDVLTA-DV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + H F + VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 ATMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 236 LLANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277 >gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 281 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera] Length = 307 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 142/293 (48%), Gaps = 17/293 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 +S + F K G+GN +++D R + + D N +I + Sbjct: 19 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGINGT 78 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + ++SFT T G++V + DG + Sbjct: 79 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKVK 138 Query: 118 VDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 VDMG+PIL +P +K + + ++ V+ N VSMGNPH + F Sbjct: 139 VDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSW----NVTCVSMGNPHCVTFGTKG 194 Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + +LA G H MF N +V S L +R WERG G T ACG+ A Sbjct: 195 GQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGA 254 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 255 CAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307 >gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357] Length = 269 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/271 (32%), Positives = 127/271 (46%), Gaps = 10/271 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF L ++ T G +V D + V+MGEP + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P +K ++ + VVSMGNPH + V DD+ + + G +L Sbjct: 121 SAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVETLGPVL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E N+ +V E + LR +ERG G T ACGS ACA+V V Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V++ GG L I W H ++MTG A ++G Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 265 >gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 370 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 142/293 (48%), Gaps = 17/293 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60 +S + F K G+GN +++D R + + D N +I + Sbjct: 82 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGINGT 141 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + ++SFT T G++V + DG + Sbjct: 142 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKVK 201 Query: 118 VDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 VDMG+PIL +P +K + + ++ V+ N VSMGNPH + F Sbjct: 202 VDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSW----NVTCVSMGNPHCVTFGTKG 257 Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + +LA G H MF N +V S L +R WERG G T ACG+ A Sbjct: 258 GQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGA 317 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 CA VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 318 CAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370 >gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32] gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32] Length = 276 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + + D I L+ FDQ++++ D D RI Sbjct: 5 FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ RMK + S T +G +V K + I+V+MG Sbjct: 65 FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP F ++ +I V+ LF VSMGNPH + V DD+ D+ Sbjct: 123 PEFEPGKIP----FKAKQPEKTYILRTDVHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V V++ GG L I W + MTG A ++G+L Sbjct: 235 LLAENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQL 274 >gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] Length = 276 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 141/277 (50%), Gaps = 11/277 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID + N++ I A+ NT FDQ +L+ Q +D R Sbjct: 5 FTKMHGLGNDFIVIDGINQNINLSPQQI-AIMAQRNTGIGFDQCLLVESSQQEGIDFNYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV CGNG RC+ F+ + T T + N D S+ VDMG P Sbjct: 64 IFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L + IPL ++ D+ + ++L +S+GNPHA+ V + L+ + S Sbjct: 124 KLAPRDIPLLTQ-EQSDQYVLELSNNESIYLH---ALSVGNPHAVLLVPE-LHRAPVLSL 178 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ HP F E VN+ ++ + + + LR +ERG G T ACGS A A+ +K + Sbjct: 179 GKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYYKMD 238 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + V + GG LLI+W + N + +TG A +EG L Sbjct: 239 KHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275 >gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] Length = 284 Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + ++ AI S D ++LI A V + Sbjct: 6 FTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118 RI N DGSE ++CGNG+RCV +++ + +F ET+ G++ A +++ ++V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVTV 123 Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P + + +P L + G N VSMGNPH +F++ED + Sbjct: 124 DMGKPRFEKEAMPMLGEPASTTINEPLDFGTTT----LNGTAVSMGNPHIVFYLED-IEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 179 APLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K ++V + GG L+I W DN HV MTG A+ +G Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTF 282 >gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 276 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WER G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101] Length = 395 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 14/277 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + F+K +G+GN L++D R D +T + + L D ++L + Sbjct: 16 LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 + +RI N DG+E + CGNG+RC+ RFL R +++ +T+ G +V + DG+I Sbjct: 76 -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L +P + + +F MGNPH + V + Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVFAVA--AAGMGNPHVVIPVPL-VE 191 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG LL HP F N+ +V S + L +R WERG G T ACG+ ACA++V+ Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAK 272 L +R + + GG L I W + VFM G A+ Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAE 288 >gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] Length = 275 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 146/301 (48%), Gaps = 58/301 (19%) Query: 5 MVDFAKMEGIGNKILV-------------IDMRGCHDNITSDAINALSTDDNTHFDQIML 51 M+ F K GIGN ++ + M+ CH N A D +M+ Sbjct: 1 MLKFEKYHGIGNDFIIFREEEVAGLDYSELAMKVCHRNFGIGA------------DGMMV 48 Query: 52 IHDFQDASVDAFIRII--NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-IL 106 + A IR+I N DGSE CGNG+RC F+ + +++ ET+ G +L Sbjct: 49 AAKSEKAD----IRMIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNML 104 Query: 107 VAKENRDGSI--SVDMGEPILDWKLIPLA--------RSFDKMDRDRFHIGPVNHLFLRN 156 + E +DG V+MG PI + IP++ R + DR+ ++ LF Sbjct: 105 IKTEEKDGRYLARVNMGMPIFETDSIPMSVSEKDYIERKIESYDREF----SISALF--- 157 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 MG H++ FV DDL D+ +G L +P+F N++ A+ S + +D++TWE Sbjct: 158 -----MGTTHSVTFV-DDLETLDIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWE 211 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RG G T ACG+ ACA VV + ++ V V + GG L IE D+ VFMTGE++K E Sbjct: 212 RGAGYTFACGTGACAVVVIGNLTGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAE 270 Query: 277 G 277 G Sbjct: 271 G 271 >gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 137/295 (46%), Gaps = 32/295 (10%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F KM G GN +V+D ++T + AL + HF DQI+L+ D Sbjct: 10 NFTKMHGAGNDFVVLDGVRQTIDMTPERARALG---DRHFGIGADQILLVERATRPDADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E GILV + D ++VDM Sbjct: 67 RYRIFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDM 126 Query: 121 GEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPF---------VVSMGNPH 166 G + +P LA D + L L P V++ NPH Sbjct: 127 GSTRFEPSALPFDTAGLASRVQGQDT-------LWELELDAPAGLPRTVALSAVAISNPH 179 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 A+ V DD+ +A G L+ HP F VN ++ ++ LR +ERG G T ACG Sbjct: 180 AVQVV-DDVDTAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACG 238 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + ACA+V A + V V+ GG L + W+ + MTG A+ + G++DI Sbjct: 239 TGACAAVAAGIRRGLLDSPVRVQARGGVLTVAWN-GEQLRMTGPAESVFTGQVDI 292 >gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] Length = 277 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG+GN + ++ + I + A+ D HF D ++LI A D F Sbjct: 3 FTKMEGLGNDYVYVNC--LEEQIADPSKTAIEVSDR-HFGIGSDGLILIKPSDKA--DFF 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 + + N DGS+ + CGNG+RCV +F+ + T +T+ GI N + S+ Sbjct: 58 MEMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P LIP+ D + F G + VSMGNPH I ++ DD+ + Sbjct: 118 VNMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRIT----CVSMGNPHCITYM-DDIKN 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G + +F + VN V ++L +R WERG G T ACG+ ACA VAS Sbjct: 173 LEIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 N +V+VK+LGG L I W + + V+M G A + G+ Sbjct: 233 LNGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGE 274 >gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54] Length = 297 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/295 (33%), Positives = 137/295 (46%), Gaps = 32/295 (10%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F KM G GN +V+D +T + AL + HF DQI+L+ D Sbjct: 4 NFTKMHGAGNDFVVLDGVRQAIEMTPERARALG---DRHFGIGADQILLVERATRPDADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDM Sbjct: 61 RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDM 120 Query: 121 GEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPF---------VVSMGNPH 166 G D +P LA + D + L L P V++ NPH Sbjct: 121 GSTRFDPAALPFDTAGLASRTEGQDT-------LWQLELDVPAGLPRSVALSAVAISNPH 173 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 A+ V D++ +A G L+ HP F+ VN ++ S+ LR ERG G T ACG Sbjct: 174 AVQVV-DNVDTAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACG 232 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + ACA+V A + V V+ GG L I W + + +TG A+ + G++DI Sbjct: 233 TGACAAVAAGIRRGLLDSPVRVQTRGGVLTIAW-NGEQLRLTGPAESVFTGQVDI 286 >gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18] gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18] Length = 276 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 26/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + ++ C + D N +F D ++LI + A D Sbjct: 3 FTKMQGAGNDYVYVN---CFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV-----AKENRDGSI 116 +R+ N DGSE + CGNG+RCV ++ + K T ET GIL ++++ + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVED 173 V+MG P L K IP+ + D+ + P+N L + F SMGNPH + FV D Sbjct: 118 RVNMGPPRLTRKEIPMLGNPDEKVINE----PLN--ILHSTFHITCASMGNPHCVIFV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + + +G ++ H MF N+ +V S + RTWERG G T ACG+ + A Sbjct: 171 DVDKFPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVT 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 231 AACVLNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276 >gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] Length = 271 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 23/285 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D + I L+ FDQ++++ VD Sbjct: 2 LINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 I N +GSEV+ CGNG RC RF+ + S T +T I+ N D ++ VDMG Sbjct: 62 YVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDMG 121 Query: 122 EPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +P + IPL + + + F +G +S+GNPH + V+ D+ D Sbjct: 122 KPSFNPADIPLLVPQQSEYYQIEGFDLG-----------AISIGNPHCVMLVK-DVNTID 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236 + + + + + N+ ++ + ++LR +ERG T ACGS ACA+V V Sbjct: 170 VNTIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQ 229 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L K V V + GG LIE+ H+F++G A+ +EG+++I Sbjct: 230 GLLKKN---VVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271 >gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays] gi|194688384|gb|ACF78276.1| unknown [Zea mays] gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays] gi|219888355|gb|ACL54552.1| unknown [Zea mays] Length = 352 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 133/284 (46%), Gaps = 15/284 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQ---IMLIHDFQDASVDAFI 64 F K +G+GN +++D R + A D N I ++ DA D + Sbjct: 70 FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNDA--DYTM 127 Query: 65 RIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSE + CGNG+RC RF L + SFT T G ++ + DG + VDMG Sbjct: 128 RIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDMG 187 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-- 179 EPIL IP K ++ + VSMGNPH + F ++L Sbjct: 188 EPILSGADIPTKLVATK-NKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQID 246 Query: 180 ---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L+ G H MF N +V S L +R WERG G T ACG+ ACA VVA+ Sbjct: 247 DLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAA 306 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 + R V + GG L IEW D+NHV+MTG A+ + G + Sbjct: 307 VLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350 >gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] Length = 269 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 139/278 (50%), Gaps = 20/278 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68 M G+GN +V+D + + D I L+ D +T FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYRIFN 59 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGEPI 124 DGSEV+ CGNG RC RF+ RMK + S + T +G +V D ++V+MG P Sbjct: 60 ADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPE 117 Query: 125 LDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP F ++ +I LF VSMGNPH + V DD+ D+ + Sbjct: 118 FEPNKIP----FKAKQTEKTYILRAEDKTLFCG---AVSMGNPHVVT-VVDDVATADVET 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V Sbjct: 170 LGPLLESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLL 229 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+V + GG L I W +FMTG A ++G+L Sbjct: 230 DEHVTVHLPGGDLKISWKGPGKPLFMTGPATHVFDGQL 267 >gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48] gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48] Length = 276 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 138/282 (48%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D NT FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRNTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + G V+ + VSMGNPH++ V DD+ + Sbjct: 121 GPPRFVPADIPFIADEQALSYPLEVDGQVHQIA-----AVSMGNPHSVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V++ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276 >gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] Length = 267 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ +K T +T GI V K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172 ++VD+G P L+ + + F PF VSMGNPH + FVE Sbjct: 120 VTVDIGSP-LETEAVDFGDQF--------------------PFQSTRVSMGNPHLVTFVE 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + +L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ Sbjct: 159 D-ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VA+ R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21] gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21] Length = 292 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 24/297 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 + ++V F+KM G+GN +VID D + D ++ + + Sbjct: 3 ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI------LVAK 109 D RI N DGSE + CGNG+RC +++ ++ K ET+ GI ++ Sbjct: 63 EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAI 168 E R S SVDMG P IP+ K +++ F ++ + N V++GNPHA+ Sbjct: 123 EVR--SSSVDMGIPTFKSVEIPM-----KTEKEEFLDAELDVNGTTVNLTAVNVGNPHAV 175 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 F E+ + DL G + HP F E N+ V + +++ TWERG G T ACG+ Sbjct: 176 IFTEN-IEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTG 234 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIK 282 A ASV+A L K + V V + GG LLI E + +FM GEA ++G ++++ Sbjct: 235 ATASVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291 >gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 269 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +VI+ +T I LS + FDQ++LI + D RI N Sbjct: 1 MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 +G+EV+ CGNG RCV FL + ++ T + + K D +I V+M EP Sbjct: 61 NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + I +++ K+ + F + +N +VS+GNPH + VE + + + G LL Sbjct: 121 EEISISK---KIVLNNFSVKLINKNL--KCSLVSIGNPHCVIKVES-INNAPVKKIGELL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + V Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V +LGG L+I+W N+ ++M G A ++G + I Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269 >gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13] Length = 279 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + + + ++ +D D ++LI Q A D Sbjct: 3 FTKMQGIGNDYIYVN---CFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE CGNG RC+ +++ + T ET GI + + G S++ Sbjct: 58 MRIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+ IL + IP+ ++ F PV L VS+GNPHA+ F D + Sbjct: 118 VDMGKAILTPREIPVESD----SQEPFVAKPVQVGDRLERLTCVSVGNPHAVVFC-DRVE 172 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G L H +F + VN RV +L +R WERG G T ACG+ ACA+ VA+ Sbjct: 173 DLDLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAA 232 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + VK+ GG L I + + V MTG A++ ++G++++ Sbjct: 233 VLNGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279 >gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] Length = 278 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + ++ C + D N +F D ++LI + A D Sbjct: 3 FTKMQGAGNDYVYVN---CFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116 +R+ N DGSE + CGNG+RCV ++ + + T ET GIL + D + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175 V+MG P L K IP+ +R P+N L N SMGNPH + FV DD+ Sbjct: 118 RVNMGPPRLTRKEIPMLGE----PEERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDV 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 173 DTFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++D+ Sbjct: 233 CVLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278 >gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii L2-63] Length = 1350 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 146/292 (50%), Gaps = 26/292 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F KM+GIGN + I++ A+ D HF D I+L+ + A Sbjct: 1070 MLKFTKMQGIGNDYIYCST--FDQEISNPEALAVRLSDR-HFGIGGDGIILVCPSKVA-- 1124 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGS 115 DA +++ N DGSE + CGNG+RCV +FL ++ T ET+ GI K G Sbjct: 1125 DAKMKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGG 1184 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + VDMG+ ILD K IP+A DK+ I N+ N VSMGNPH + F+ Sbjct: 1185 KVNRLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFM 1240 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--A 229 DD+ + D+ + G +F E VN V ++ +R WERG G T ACG+ A Sbjct: 1241 -DDIDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACA 1299 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A K + +K+ GG L+I + D V+MTG A+K +EG++++ Sbjct: 1300 VAVAACENGFCKKGEDIKIKLKGGDLIINYTDET-VYMTGNAEKVFEGEVEV 1350 >gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] Length = 276 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 137/282 (48%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ H +I A FDQ++++ Q+ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KRK ET GI+ DG I VDM Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRK-IKVETKGGIIELDIRPDGQIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + G L SMGNPHA+ V D + + Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAASMGNPHAVLRV-DSVERAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 17/278 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K G+GN +VID R +SD I + N H DQ+++ + Sbjct: 49 FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVC---NRHVGIGGDQLLVFEAPESPEASVR 105 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DG E ++C N RC + +R ET+ G + AK D +S+ +G Sbjct: 106 LRIYNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNA 165 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPLA S + + GP L +P +++GNPH ++FV+ +L D+A+ Sbjct: 166 KWDWPEIPLAGSLESAGA-QLESGP-----LVSPIAINIGNPHLVYFVQ-NLGGLDIAAL 218 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHK 241 + + K E N+ +A VT +S+ L +ER LT ACGS ACA+V+A+ L Sbjct: 219 ADPVQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLIS 278 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +++ V+V GG L +E D +TG ++G + Sbjct: 279 SDK-VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315 >gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 279 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 15/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +V++ + I L D ++L+ + + AF+ Sbjct: 3 FLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFMDY 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120 N DG+ Q CGNGMRC+ +++T R +K+ FT + G L+ + + +I VDM Sbjct: 61 YNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + + IP+ +++ F V + + SMGNPH + D + Sbjct: 121 GNVVFSAQKIPVISKKEEVIGAHFDWDGVTYSY----GCASMGNPHMVVLT-GDFDQTPI 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G KH MF E N+S A V + + TWERG G T ACG+ CA+V L Sbjct: 176 EAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHRLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + AV ++ GG L +E D +HV+MTG A+ +EG +D++ Sbjct: 236 KVDTAVEAQLSGGILSVEL-DGSHVWMTGPAQTVYEGSVDVE 276 >gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] Length = 269 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ I+V Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 278 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 133/277 (48%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63 F+KM +GN ++ID + ++ S+ I L+ N H FDQ++L+ +D Sbjct: 3 FSKMCSLGNDFVIIDAVTQNVHLRSEFICRLA---NRHTGIGFDQLLLLEPPNSPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC+ RF L +K+ T + I V+MG Sbjct: 60 YRIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + IP RS K + + + L +VSMGNPH I VE L + Sbjct: 120 EPDFFPQTIPF-RS--KTIKKIYELDVAEQKLLCG--IVSMGNPHCIIQVEK-LDSDQIK 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL HP F EG N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 174 LIGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V V+ GG L I W H ++MTG A ++G Sbjct: 234 LDEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDG 270 >gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619] gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619] Length = 276 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 139/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP ++ G ++ + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADEQALNYPLEVDGELHSIA-----AVSMGNPHAVLRV-DDIRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HGLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276 >gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 267 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 130/276 (47%), Gaps = 16/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAF 63 ++F KM G+ +++D R + +TS A+ D N F+Q+ ++ D DA DA Sbjct: 3 LNFQKMHANGDDFVIVDSRNSANPVTS-AMAQRMGDRNLGVGFNQLAVLLDCDDA--DAR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS + CG+ R L S T RG+L + G ISVDMG P Sbjct: 60 VMFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + W IPLA++ D + P+ +P SMGNPH +FV DD D+A+ Sbjct: 120 LFGWSDIPLAQALDT------AVLPLAG----SPAACSMGNPHCTYFV-DDPATVDIATI 168 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + + +F N+ ++ + LR WERG G+ GS +C +VV + Sbjct: 169 GPAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLD 228 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V V+ GG + ++W VF+ G + + G + Sbjct: 229 RTVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTM 264 >gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205] gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205] Length = 281 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 150/287 (52%), Gaps = 23/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAF 63 V F KM+G GN + +D + + AI + D ++LI D D Sbjct: 7 VHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADYS 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRD--GS 115 +RI N DGSE CGN RC+ ++L + ++ + ET+ GI + K +N++ S Sbjct: 67 MRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVKS 126 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDM EP L+ + S + D +F V MGNPH + FV DD+ Sbjct: 127 VTVDMLEPKLENPEQFIGPSVLEADGRKFE-----------GTYVCMGNPHFVTFV-DDI 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+A +G +L + F + N+ A+VT + + R WERG G+T ACG+ ACA+ VA Sbjct: 175 DTIDIAHYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + ++T R S+ M GG L IE+ + ++HV+MTG A +EG++++ Sbjct: 235 AALTNRTGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281 >gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470] gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470] Length = 283 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 138/290 (47%), Gaps = 19/290 (6%) Query: 1 MQSSMVDFAKMEGIGNKI-----LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF 55 MQ + F K + GN + +D+R + ++ + + D I+ + Sbjct: 4 MQEGFMHFTKWQACGNDFVFVNAMTMDIR----PVVKKCVSICNRNFGIGADGIIFVLPS 59 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + A++ +RI N DGSE + CGNG+R ++ + + F+ ET GIL + D Sbjct: 60 EKATLQ--MRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPD 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G + VDMG P L+ IP+ D M +R N L VSMGNPH + F D Sbjct: 118 GKVRVDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFT-D 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L G+ L F N+ A++ L +R WERG G+T ACG+ CA+V Sbjct: 174 DIDRISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATV 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281 VA+ V + GG L I W ++ HVFMTG A+K +EG+ I Sbjct: 234 VAAILNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283 >gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3] gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3] Length = 269 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ I+V Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQA 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565] gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565] Length = 276 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF L + R T RG +V + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP A+ +K R H + VVSMGNPH + V + + Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--VVSMGNPHCVIEV-PSVADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ +H F E VN+ + + + LR +ERG G T ACG+ ACA+ V Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276 >gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] Length = 284 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 5/281 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN +V+D+ + + I L+ FDQ++L+ VD Sbjct: 2 FLEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D+ + + + + N VV+MGNPHA+ V D L D+A Sbjct: 122 PPKFLPDEIPFVTQVDEDIEGLYSLELADDKSI-NIDVVNMGNPHAVTIVPDVLTA-DVA 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 180 GIGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 240 LASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 283 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 129/270 (47%), Gaps = 17/270 (6%) Query: 8 FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD----A 62 F KM G+ N +++D R G D + +Q++ I D + A Sbjct: 7 FIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAYA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG EV +CGN RC+ L ET G+L + ISV G Sbjct: 67 AMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFGP 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +DW+ IPL+R D + H+ PV L++ + +GNPHA+FFV D L +D+A Sbjct: 127 ISMDWRRIPLSREVDTL-----HL-PVQSGPLKDGLALDIGNPHAVFFV-DCLELFDMAH 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK- 241 ++ P+F EG+N+ A V +L L WER LT ACG+ AC + A+ L + Sbjct: 180 HAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAA--LKRG 237 Query: 242 --TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 T+ ++V + G L IE + + MTG Sbjct: 238 LVTSTRIAVHLPAGLLKIEIANGDMAVMTG 267 >gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] Length = 289 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 147/299 (49%), Gaps = 37/299 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------- 55 + M+ F+KM G+GN +VID A + D F + + F Sbjct: 2 TRMILFSKMHGLGNDYVVID---------ESAQECIPEDKKPEFVREVCTRGFSVGADGV 52 Query: 56 ---QDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-LV 107 Q AS + IR I N DGSE + CGNG+RC +F+ + ++++ ET+ GI V Sbjct: 53 IFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTV 112 Query: 108 AKENRDGSI---SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 E DG++ VDMG IP+ ++ +DR PV ++ +S+G Sbjct: 113 ELEVEDGAVVSSRVDMGTATFKTDQIPMDVEEYEFIDR----FLPVEGEDIKLT-ALSVG 167 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHAI FV DD DL G + HP+F E +N+ V S + + TWERG G T Sbjct: 168 NPHAIIFV-DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTM 226 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279 ACG+ A ASV+A L K + +V V + GG L I+ + D + +M G+A ++G L Sbjct: 227 ACGTGATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285 >gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13] gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13] Length = 286 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 22 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 79 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ ++V Sbjct: 80 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 139 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ Sbjct: 140 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 182 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 183 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 242 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 243 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286 >gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] Length = 278 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 24/285 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + ++ C + +D N +F D ++LI + D Sbjct: 3 FTKMQGAGNDYVYVN---CFEETVADPRQVAIQVSNRNFGIGSDGLILI--MPSTTADVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSIS-- 117 +R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + DG I+ Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKV 117 Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHAIFFVEDD 174 V+MG P L IP+ + D +G + R N SMGNPH + FV DD Sbjct: 118 RVNMGPPRLARSEIPM-----RGDAAPQVVGEQLTILDRTFNITCASMGNPHCVIFV-DD 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + ++++G L+ H +F N+ ++ S + RTWERG G T ACG+ + A Sbjct: 172 VAGFPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTA 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 232 ACVLNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276 >gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] Length = 364 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 137/294 (46%), Gaps = 33/294 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD---NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + D + D D ++L Q Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQGQ 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RFL K + ET G++ + DG Sbjct: 61 G-DLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119 Query: 116 ISVDMGEPILDWKLIP--------LAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + VDMG P L+ IP LAR S D DR + V MGNPH Sbjct: 120 LRVDMGAPFLEPSSIPTTLPLVDGLARGSADLADR-ALEVA-----------AVGMGNPH 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + VED L ++G L H +F N+ +V + L++R WERG G T ACG Sbjct: 168 VVVPVED-LNAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACG 226 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + ACA++VA+ L + V + GG L I W + V MTG A ++G L Sbjct: 227 TGACATLVAAVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVL 280 >gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 286 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 146/297 (49%), Gaps = 37/297 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF--------- 55 M+ F+KM G+GN +VID A + D F + + F Sbjct: 1 MILFSKMHGLGNDYVVID---------ESAQECIPEDKKPEFVREVCTRGFSVGADGVIF 51 Query: 56 -QDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-LVAK 109 Q AS + IR I N DGSE + CGNG+RC +F+ + ++++ ET+ GI V Sbjct: 52 VQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVEL 111 Query: 110 ENRDGSI---SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 E DG++ VDMG IP+ ++ +DR PV ++ +S+GNP Sbjct: 112 EVEDGAVVSSRVDMGTATFKTDQIPMDVEEYEFIDR----FLPVEGEDIKLT-ALSVGNP 166 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HAI FV DD DL G + HP+F E +N+ V S + + TWERG G T AC Sbjct: 167 HAIIFV-DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMAC 225 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279 G+ A ASV+A L K + +V V + GG L I+ + D + +M G+A ++G L Sbjct: 226 GTGATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282 >gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] Length = 278 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 18/280 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64 F KM +GN + +D + +D + +L+ +D LI S D + Sbjct: 3 FFKMHALGNNYVFVDT--ARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSADVGM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 RI N DGSE +SCGNG+RCV R+ R + F+ ET G++ A+ + R ++ Sbjct: 61 RIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRLVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG+P + + R D+ + R G + +VSMGNPH + V+ Sbjct: 121 IDMGKPRFGTEAVTY-RGSDQGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVDDV 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + HP F + VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 176 D-VERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALA 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 235 KKGFVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEG 274 >gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] Length = 279 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 23/291 (7%) Query: 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN + I D G + + + A+ D +++I + A D +RI Sbjct: 3 FVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSI---SVD 119 IN DGSE + CGNG+RC +++ M + FT ET+ GI+ K DG + +++ Sbjct: 61 INADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVTIN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+P + + IP+ + + + + + MG PH + +V+D + D Sbjct: 121 MGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRITS----LLMGVPHTMIYVKD-VEQVD 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + N++ + ++ + TWERG G T ACG+ +CA V S Sbjct: 176 LPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSFLN 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKK 289 T R V V++ G L I++ + + +V+MTG A + TG+W +K Sbjct: 236 GFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSY-------TGEWEEK 279 >gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5] Length = 278 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 27/286 (9%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64 DF KM G+ +++D+RG +NI + I D N F++++++ D +DA+ + Sbjct: 4 DFQKMHANGDDFVIVDLRG-QENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAATQ--L 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + +CG+ R V L +R+ +T RG+L DG ISVDMG Sbjct: 61 TFWNSDGSMLDACGSATRGVAWKLAGNRLFFRRR----QTNRGLLTCFGELDGRISVDMG 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P+L W+ +P+A+ D + P+ P SMGNPH FF+ED L D Sbjct: 117 KPLLHWRDVPIAQEADTLKL------PLPGA----PSACSMGNPHCTFFIED-LEAVDAK 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G HP+F + N+ +V S + LR WERG G+ GS +C +VV Sbjct: 166 MRGLEFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGL 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE----WEGKLDIKT 283 +V V+ GG + + W VF+TG W G+L K+ Sbjct: 226 LTSSVDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGTWIGELSQKS 271 >gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 269 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 32/283 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + I+ C + + HF D ++LI D Sbjct: 3 FTKMQGTGNDYVYIN---CFEETVERPEELAVKVSDRHFGIGSDGLILI--CPSGQADCR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 +++ N DGSE + CGNG+RCV +F+ +++K F ET GI K +G I+ Sbjct: 58 MKMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGGKAALIT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P + +P D R IG +SMGNPHAI+++ D++ Sbjct: 118 VDMGIPEVTGD-VPEPIVVD--GRSYEFIG------------ISMGNPHAIYYM-DEIDD 161 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G H F E N +V L +R WERG G T ACG+ A AS VAS Sbjct: 162 LDLEAIGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASV 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 +T V V++ GG L I W ++ HV+MTG A + ++G+ Sbjct: 222 LSGRTENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEF 264 >gi|238009464|gb|ACR35767.1| unknown [Zea mays] Length = 350 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 138/284 (48%), Gaps = 18/284 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + A D N D ++ + + + D +R Sbjct: 71 FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 129 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF+ + FT T G +V + DG + VDMGE Sbjct: 130 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 189 Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 PIL IP LA + + + G H+ VSMGNPH + F ++L Sbjct: 190 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVD 244 Query: 179 DL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G H MF N +V S L +R WERG G T ACG+ ACA VVA+ Sbjct: 245 DLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAA 304 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 + R V + GG L IEW D+NHV+MTG A+ + G + Sbjct: 305 VLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348 >gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 279 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 17/281 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+K +G GN +++D H+ + + D + L+ + D +R Sbjct: 3 FSKWQGCGNDFVIVDFLD-HEPVDFAVLAREMCDRHFGVGADGLMAACPSETADVRMREF 61 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---VDMG 121 N DG+E + CGNG+RC R+L + + FT ET+ G +V + +DG++S VDMG Sbjct: 62 NPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDL 180 P+L+ IP+A +R P+ VSMGNPH + FV DD + L Sbjct: 122 IPVLEGARIPVA----GFGTERVVAQPITVAGKEYAMTCVSMGNPHCVVFV-DDADGFPL 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 177 KQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGVLND 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK----EWEG 277 +R ++++ GG + + W ++ H+ MTG A++ EW G Sbjct: 237 VLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEWPG 277 >gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 276 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLIVEAPSNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F+ ++ + V+ + + VSMGNPHA+ V +D+ + + Sbjct: 121 GAP----RLVPADIPFEATEQAVSYALDVDGKTV-DIAAVSMGNPHAVLRV-NDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HEWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276 >gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] Length = 280 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 26/291 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + I+ + +D + HF D ++ I + DA+ Sbjct: 3 FTKMQGAGNDYVYINCFA--EQFPADPAEVARQMSDRHFGVGGDGVIYICP-SNQGADAW 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVA----KENRDGSIS 117 +R+ N DGSE + CGNG+RCV +F+ + + +T GIL K + + Sbjct: 60 MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PI++ IP + G + VSMGNPH + FV + Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFEVTS----VSMGNPHCVVFVPEATDE 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + PMF VN+ V S L RTWERG G T ACG+ A A VA Sbjct: 176 LVLG-IGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287 +T R V++ +LGG L +EW++ +N ++ TG A +++ +G+W+ Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPA-------VEVFSGEWV 278 >gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6] gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6] Length = 297 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 39/302 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---------DQIMLIHDFQDA 58 F KM+G GN +V+D + A ALS D DQI+++ Sbjct: 5 FTKMQGAGNDFVVLD--------ATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTP 56 Query: 59 SVDAFIRIINC-DGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENR 112 VD RI N G EV+ CGNG RC RF L+ +++ K ET+ ++ Sbjct: 57 GVDFRYRIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVK---VETVNSLIELHVEA 113 Query: 113 DGSISVDMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNP----FVVSM 162 DG ++VDM +PI + LIP AR + + F + P+ P V+SM Sbjct: 114 DGRVTVDMNQPIFEHALIPFDSAGLSARPHNGHG-NGFELWPLQLPGASLPSVDVAVLSM 172 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPHA+ V D + +A G + H F VN +V S + LR +ERG G T Sbjct: 173 GNPHAVQRVHD-VDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGET 231 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ACG+ ACA+VVA L + V V+ GG L I W H V MTG A+ + G +D+ Sbjct: 232 LACGTGACAAVVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDL 291 Query: 282 KT 283 T Sbjct: 292 PT 293 >gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] Length = 281 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/275 (33%), Positives = 129/275 (46%), Gaps = 9/275 (3%) Query: 8 FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G GN +V+D+R G + A DQI+ I + A A I Sbjct: 9 FSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAVAAYGI 68 Query: 67 INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG RCV +L + +SF ++ GI + DG +VDMG P Sbjct: 69 WNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVDMGAPR 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +PLA + + +F VSMGNPHA+ V D+ D+A G Sbjct: 129 FAPAQVPLAGFGAEAAEYTLELDGRRVVF----GAVSMGNPHAVIEV-GDIDAVDVAGTG 183 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L F + VN+ A+V + + LR +ERGVG T ACGS ACA+V + + R Sbjct: 184 RALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRRGRIAR 243 Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 +V + GG L I W ++ + M G A +EG+ Sbjct: 244 EATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGE 278 >gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000] gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum GMI1000] Length = 292 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D + T + A++ + HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGIATPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 62 YRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDMG 121 Query: 122 EPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176 P+ + +P A RD H +N R ++ VSMGNPHA+ V DD Sbjct: 122 APVFEAARLPFVPDALPTRVEGRDTQHALQING---RTAWLSTVSMGNPHAVQVV-DDAE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 178 AFPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAG 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG LD+ Sbjct: 238 IRRGLLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDL 283 >gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] Length = 297 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 138/292 (47%), Gaps = 26/292 (8%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F KM G GN +V+D +T + AL + HF DQI+++ A D Sbjct: 4 NFTKMHGAGNDFVVLDGVRQTIEMTPERARALG---DRHFGIGADQILVVERPTVADADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R + GILV E D ++VDM Sbjct: 61 RYRIFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNP---------FVVSMGNPHAIF 169 G + P A FD G + L L P V++ NPHA+ Sbjct: 121 GST----RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQ 176 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V D++ +A G L+ HP F+ VN +V ++ LR +ERG G T ACG+ A Sbjct: 177 VV-DNVDTAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGA 235 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CA+V A V V+ GG L + W + + + MTG A+ + G++DI Sbjct: 236 CAAVAAGIRRGLLESPVRVQTRGGVLTVAW-NGDQLRMTGPAESVFTGQVDI 286 >gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] Length = 284 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 142/281 (50%), Gaps = 5/281 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN +V+D+ + + I L+ FDQ++++ VD Sbjct: 2 FLEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D+ + + + + N VV+MGNPHA+ V D L D+A Sbjct: 122 PPKFLPDEIPFVTQVDEDIEGLYSLELADDKSI-NIDVVNMGNPHAVTIVPDVLTA-DVA 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 180 GIGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 240 LANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] Length = 273 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R N+ N HF D I+ + + D Sbjct: 3 FTKMTGTGNDFIVLDDR--KGNLIGKEKELAQKLCNRHFSIGADGILFVRE-SDTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117 + IIN DGS CGNG+RC +++ S +K ET G+ A + +G I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++MGEPI + + I + +K+ R+ N + F MG PH I F +L Sbjct: 120 INMGEPIFEGEKISNEKEKIINKIIREN------NKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L T ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYTGKSTEVMLPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] Length = 295 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 144/296 (48%), Gaps = 28/296 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASV 60 ++F KM G+GN +VI+ + I D S + D ++ + D Sbjct: 3 LNFTKMHGLGNDYIVINEFDG-EKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKY 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----S 115 D RI N DGSE + CGNG+RC +F+ R M++ ET+ G+ V++ N + S Sbjct: 62 DIRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKS 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAI 168 I V MG P + K IP+ K + D F + L+N VV++GNPHA+ Sbjct: 122 IKVFMGAPTFELKDIPMVVE-GKSENDVFLDEEIE---LKNALLNSVKLSVVNVGNPHAV 177 Query: 169 FFVEDD-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 F++D+ L G + H +F E +N+ + + + + + TWERG G T Sbjct: 178 IFMKDNNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTT 237 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ACG+ +SV+ + L KT V + GG L IE ++ V+M G+A ++G+L Sbjct: 238 ACGTGTTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292 >gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] Length = 277 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 140/284 (49%), Gaps = 20/284 (7%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + T AI D + ++ + D +RI Sbjct: 3 LTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120 IN DGSE + CGN +RC ++ +++FT ET+ G++ + I +VDM Sbjct: 61 INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+P + IP+ DK+ D D VN + V+ +G PH F+ DD+ Sbjct: 121 GKPFFKSQDIPMNVDMDKVIDVDLD------VNGETVTVSSVL-LGVPHTEVFI-DDITK 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 173 APVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSF 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 233 EKGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276 >gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] Length = 284 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 145/282 (51%), Gaps = 19/282 (6%) Query: 8 FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ + + ++ A+ S D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISV 118 RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ EN + ++V Sbjct: 64 RIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVAV 123 Query: 119 DMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L +P+ ++ + G VSMGNPH +F + D+ Sbjct: 124 DMGEPRLTKAELPMLGGGEEYTISETMTFGEAE----LTGTAVSMGNPHIVFPI-ADIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G ++ K P F EGVN+ + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + + N+ ++V + GG L+I W N HV MTG A+ EG Sbjct: 239 LNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEG 280 >gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2] Length = 274 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 143/275 (52%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + ++ I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYP---- 116 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P F + + + + + VV+MGNPHA+ V D L D+A G + Sbjct: 117 KFLPNEIPFVAEQPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB] gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB] Length = 274 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 30/286 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + +P F +L+L VSMGNPH + VE + Sbjct: 121 PNFEPQQVP------------FRANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SV 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233 + G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 168 KTAQVELLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVAC 227 Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + G L V V + GG L I W ++MTG A ++G Sbjct: 228 GIQQGILAPN---VRVDLPGGTLHISWKGAGQPLYMTGPATHVYDG 270 >gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 276 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF L + R T RG + + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + IP A+ +K R H + VVSMGNPH + V + + Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--VVSMGNPHCVIEV-PSVADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+ V Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF] gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii] Length = 281 Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K +P F + + + + + + VV+MGNPHA+ V D L D+A Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E +N +V + + LR +ER VG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] Length = 277 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 5/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN V+D+R +TS+ I A S FDQ++++ VD Sbjct: 3 IRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DGSEV+ CGNG RCV RF + F ET RG+L D + V MG P Sbjct: 63 RIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGIPT 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP ++ + + P ++ +++GNPHA+ +V + G Sbjct: 123 FKPSEIPFVADDAALNYN-LPLYPDQASQIKV-GALAIGNPHAVVWVSSTAA-APVEELG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +L HP F VN+ A ++LR +ERGVG T ACG+ ACA+ + Sbjct: 180 PILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGLVS 239 Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VSV + GG L I+W V MTG A ++G+L Sbjct: 240 PVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGEL 275 >gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] Length = 276 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSI 116 D +R+ N DGSE CGNG+RCV +++ + +R S ET G+ L DG++ Sbjct: 50 DFQMRMFNADGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTV 109 Query: 117 S---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S VDMG+ L K IP+ +D + +L VSMGNPHA+ F D Sbjct: 110 SSVRVDMGKASLKAKDIPVETDYDDFISQPMLVRGEVYLVT----CVSMGNPHAVVFC-D 164 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + LA G L +H F EGVN ++ ++L +R WERG G T ACG+ ACASV Sbjct: 165 DVDNLPLAEIGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASV 224 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ + V+V++LGG L I H + V M G A ++G +++ Sbjct: 225 AAAIVNENCDFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIEL 274 >gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1] gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1] Length = 282 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 30/286 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175 P + + +P F +L+L VSMGNPH + VE + Sbjct: 129 PNFEPQQVP------------FRANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SV 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233 + G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 176 KTAQVELLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVAC 235 Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + G L V V + GG L I W ++MTG A ++G Sbjct: 236 GIQQGVLAPK---VRVDLPGGTLHISWKGAGQPLYMTGPATHVYDG 278 >gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425] gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425] Length = 280 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 30/291 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56 + F K +G+GN ++ID R ++A L+ + + HF D ++ + Sbjct: 3 LQFTKYQGLGNDFILIDNR-------NEATPLLTPEQAVDICDRHFGVGADGVIFLLP-A 54 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKEN 111 D +RI N DGSE + CGNG+RC+ RF + + T+ G + + Sbjct: 55 TGETDYTMRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVR 114 Query: 112 RDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 DG ++VDMG+P L IP L + +K+ +G + VSMGNPH I Sbjct: 115 SDGQVTVDMGQPRLLAGEIPTTLKPAAEKVIAQPLQVGGRSWSVT----CVSMGNPHCIT 170 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVE+ + DL + G HP F + +N V + L +R WERG G+T ACG+ A Sbjct: 171 FVEN-VAAIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGA 229 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 CA++VA+ + +V++ GG L IEW V MTG A++ ++G L Sbjct: 230 CAALVAAVLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280 >gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 269 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 135/287 (47%), Gaps = 34/287 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + +D C + N HF D ++LI + A D Sbjct: 3 FTKMQGLGNDYVYVD---CFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQ 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI--LVAKENRDGSI- 116 + + N DGS CGNG+RCV ++ RK T ET GI L KE ++ Sbjct: 58 MDMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQ 117 Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +VDMG P + + S + ++ IG +SMGNPHA+ FV DD Sbjct: 118 LTVDMGRP---EQTSEIPESIEVDGKEYQFIG------------ISMGNPHAVLFV-DDT 161 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L S G H F + N +V + +R WERG G T ACG+ ACAS VA Sbjct: 162 AAVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVA 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 S T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 222 SILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAI 268 >gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10] gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1] Length = 269 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 135/287 (47%), Gaps = 34/287 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G+GN + +D C + N HF D ++LI + A D Sbjct: 3 FTKMQGLGNDYVYVD---CFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQ 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI--LVAKENRDGSI- 116 + + N DGS CGNG+RCV ++ RK T ET GI L KE ++ Sbjct: 58 MDMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQ 117 Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +VDMG P + + S + ++ IG +SMGNPHA+ FV DD Sbjct: 118 LTVDMGRP---EQTSEIPESIEVDGKEYQFIG------------ISMGNPHAVLFV-DDT 161 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L S G H F + N +V + +R WERG G T ACG+ ACAS VA Sbjct: 162 AAVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVA 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 S T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 222 SILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAI 268 >gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] Length = 276 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +VID+ H +I D +T FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEPPSRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMK-RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF L R+ +K ET G++ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ + IP +D G L +SMGNPHA+ VE+ + + Sbjct: 121 GPPRLEPREIPFQAENAALDYQVEVDGCEVELA-----ALSMGNPHAVLRVEN-VESAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V MTG A + +EG++ + Sbjct: 235 WMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276 >gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] Length = 281 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ +VD Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + D I N+ L VV+MGNPHA+ V D + D+A Sbjct: 122 YPKFLPQEIPFIADAPEALYD---IALANNEQLTID-VVNMGNPHAVTIVPD-VITADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F + VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 177 RLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + +V +++ GG L IEW + + V+MTG +EG++D+ Sbjct: 237 LDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDL 276 >gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 276 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D NT FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRNTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F + + V+ ++ VSMGNPHA+ V DD+ + Sbjct: 121 GAP----RLVPADIPFQAPAQADSYTLDVDGRQVQL-AAVSMGNPHAVLRV-DDINSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14] gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14] Length = 287 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 37/300 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD- 57 S+ + F KM+G GN + ++ S A S HF D ++LI D Sbjct: 2 SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWS---KYHFKIGSDGLVLIGRPSDP 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----EN 111 A D + I N DGSE CGN RC+ ++L + ++ ET+ G+ + K +N Sbjct: 59 AKADYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDN 118 Query: 112 RDG------SISVDMGEPILDWKL---IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 ++ S++VDM EP L+ K + ++ DR + N VSM Sbjct: 119 KETGKTEVESVTVDMLEPQLEEKAQYNAEVGKNIQIEDR------------IFNGTFVSM 166 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPH + FV +D+ D+A +G+ L HP F + N+ A V + + R WERG G+T Sbjct: 167 GNPHYVIFV-NDIDTIDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGIT 225 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ACG+ ACA+ VA+ + R + M GG L IEW +NNH++MTG A +EG++++ Sbjct: 226 LACGTGACATAVAAALTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIEL 285 >gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] Length = 276 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ A FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K+ ET G++ + DG + V+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ +P + G L +SMGNPHA+ V D++ + Sbjct: 122 APRLEPAQVPFQAEQAALTYRVDVEGQSVELA-----ALSMGNPHAVLRV-DNVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] Length = 269 Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 135/284 (47%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ ++V Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ Sbjct: 123 DMGMPAVGEMALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 166 GLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2] gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] Length = 283 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 24/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN + ++ C + ++ + HF D ++ I A D Sbjct: 3 FTKMHGCGNDYVYVN---CLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGSE CGNG+RC+ +++ + + T ET GI L ++ + + Sbjct: 58 MAMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDM PI IP +D +D D+ I N +SMGNPH + FV D + Sbjct: 118 VDMEAPITKASQIPAI--YDDLDEVIDQPVIVDGKEY---NITCISMGNPHGVVFV-DSV 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ G HPMF + VN + +++ +R WERG G T ACG+ ACAS A Sbjct: 172 ADIDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYA 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 S KT + V V +LGG L IE+ + + +FMTG A ++G++D+ Sbjct: 232 SYLNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278 >gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 223 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 114/229 (49%), Gaps = 11/229 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEMA-AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 G + HP F VN+ V + LR WERG G T ACG+ A Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223 >gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] Length = 279 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 148/285 (51%), Gaps = 20/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN ++++ + + D + F D ++L+ + A + Sbjct: 3 FVKMHGLGNDFVLVN--AMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQARLR-- 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117 +RI N DGSE + CGNG+RC R++ T + + ET+ GI L+ + R + Sbjct: 59 MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ + IP+A + + + VN R VSMGNPH +FFVED + Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIE---VNGETWRG-TCVSMGNPHCVFFVED-VTG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP+F N+ +V + E L +R WERG G T ACG+ ACA+ VA Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++NR V+V + G L IEW +NHV+MTG A + + G + Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPL 278 >gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315] gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315] Length = 270 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 86/277 (31%), Positives = 125/277 (45%), Gaps = 18/277 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG HD + D + + F+Q+ +I D DA+ Sbjct: 3 IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVISDGDDAA- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I V+M Sbjct: 62 -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ IP A + D + P SMGNPH FFV DD D+ Sbjct: 121 GAPRLGWQDIPFAEAADTLALP----------LPGTPAACSMGNPHCTFFV-DDPDTLDV 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP+F + N+ RV + LR WERG G+ GS +C +VV Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V V GG + + W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSG 266 >gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] Length = 282 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 22/244 (9%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGI 105 D ++ I + D RI N DGSE + CGNG+RC +++ R +K+ ET G+ Sbjct: 39 DGVIFIQKPSSNNYDVKFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGL 98 Query: 106 LV----AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-- 159 V +++R I V MG+P K IP+ ++ +R L+NP++ Sbjct: 99 RVCELEVEDDRVKKIRVYMGKPSFKCKDIPVKSEKEEFINERAE--------LKNPYLKE 150 Query: 160 -----VSMGNPHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR 213 VS+GNPHAI FV+D + L G+ + P+F E +N+ +V + + + + Sbjct: 151 VNITAVSVGNPHAIIFVDDLEKIREHLDVIGSEIENLPIFPERINVHFVKVLNDKEIKIL 210 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 TWERGVG T ACG+ A AS V S L T V V + GG L IE D+ +M G+A Sbjct: 211 TWERGVGYTMACGTGATASAVVSNRLGFTKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVM 269 Query: 274 EWEG 277 ++G Sbjct: 270 VYDG 273 >gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana) tropicalis] Length = 289 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 28/293 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR- 65 M+G GN +V+D +++ L+ + H DQI+ + +V A I Sbjct: 1 MQGAGNDFIVLDETQGRLGLSAAQYRFLA---DRHLGVGADQILSVRAPTPQAVAAGIDF 57 Query: 66 ---IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC RF+ + + S +T G++ + DG +SVDM Sbjct: 58 EYVIHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDM 117 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFH--------IGPVNHLFLRNPFVVSMGNPHAIFFV 171 G P + +P A R + I P H+ + + SMGNPHA+ V Sbjct: 118 GLPRFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIA---IASMGNPHAVLLV 174 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ +A++G L+ H F VN ++ + LR +ERG G T ACG+ ACA Sbjct: 175 -DDVDTAPVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACA 233 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282 +VV+ L + V V GG L I W ++ VF+TG A +EG++++ Sbjct: 234 AVVSGIRLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286 >gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] Length = 272 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 56/301 (18%) Query: 3 SSMVDFAKMEGIGN---------------KILVIDMRGCHDNITSDAINALSTDDNTHFD 47 + ++ F KM G GN + L ++ H I SD + + + D F Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKADFS 61 Query: 48 QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105 +RI N DGSE + CGN RC+ ++L + + T +T+ GI Sbjct: 62 ----------------MRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGI 105 Query: 106 LVAK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + K + + +++VDMG P D K P+ + K VS Sbjct: 106 KILKLHVEDGKVNTVTVDMGRP-ADMKEQPIEANGQKF----------------TGTTVS 148 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + FVED + +L S G L HP+F + +N+ A+V + +R WERG G+ Sbjct: 149 MGNPHLVIFVED-IKDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGI 207 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T ACG+ ACA+ VA+ K+ R + M GG L IEW + +HV+MTG A + ++G++ Sbjct: 208 TQACGTGACATAVAAALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVI 267 Query: 281 I 281 I Sbjct: 268 I 268 >gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] Length = 302 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 38/301 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIMLI 52 ++F KM G+GN +VI+ D I + +D F D ++ + Sbjct: 8 LEFTKMHGLGNDYIVIN--------EFDGI-KIKEEDKEEFSRKICKRGFSIGADGVIYV 58 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN 111 + D RI N DGSE + CGNG+RC +++ R +K+ ET G+ V++ + Sbjct: 59 QKPTNDKYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMD 118 Query: 112 RDG----SISVDMGEPILDWKLIPLARSFDKMDRDRF---HIGPVNHLFLRNPF-VVSMG 163 + I V MG P K IP+ + K + D F I N L VV++G Sbjct: 119 IENDIVKKIKVYMGAPTFQLKDIPM-KVEGKSENDEFLNEAIKLNNDLIDEIKLSVVNVG 177 Query: 164 NPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 NPHA+ FVED D +L + G + H +F E +N+ V + + + TWERG Sbjct: 178 NPHAVIFVEDNNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERG 237 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T ACG+ +SV+ + L KT V + GG L IE ++ V+M G+A ++GK Sbjct: 238 AGYTTACGTGTTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGK 296 Query: 279 L 279 L Sbjct: 297 L 297 >gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383] gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 266 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 18/275 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDA 62 + F KM G+ ++D+RG I D A D F+Q+ ++ D DA+ A Sbjct: 3 IGFHKMHANGDDFAIVDLRGATHAI--DGRLARQMGDRKRGIGFNQLAVVSDCDDAA--A 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS + +CG+ R V L S T RG LV + ISV+MG Sbjct: 59 RVAFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGT 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ W+ +PLA + D + P +MGNPH FFV DDL D+A+ Sbjct: 119 PLTGWRDVPLAEALDTLALP----------LPGAPAACNMGNPHCTFFV-DDLRAIDVAA 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP+F + N+ +V + LR WERG G+ GS +C +VV Sbjct: 168 LGPAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLL 227 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V V+ GG + ++W V ++G + G Sbjct: 228 DDIVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSG 262 >gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] Length = 281 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G+GN +VID + + I + N HF DQ++++ + A Sbjct: 3 IHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWA---NRHFGIGFDQLLIVEPPKTADTL 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC R++ + K T G +V N G ++VD Sbjct: 60 FTYRIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVD 119 Query: 120 MGEPILDWKLIPL-----ARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 MG P+ IP A S+ D + I VSMGNPHA+ VE Sbjct: 120 MGRPMFTPTNIPFITECEATSYPLTLDDGSEWVID-----------AVSMGNPHAVLEVE 168 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 ++ ++ G ++ H F VN+ ++ + + LR +ERG G T ACG+ ACA+ Sbjct: 169 -NVDTAPVSHLGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAA 227 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279 VV+ ++ + V + GG L + W + V MTG A+ +EG++ Sbjct: 228 VVSGIRRNRLDSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQI 276 >gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7] Length = 269 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 135/284 (47%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ M DN +I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118 I N DGSE CGN RC+ +++ ++ T ET+ GI L K R+ ++V Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + + V+SMGNPH + FV D++ Sbjct: 123 DMGMPAVGEMALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 166 GLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays] gi|194704094|gb|ACF86131.1| unknown [Zea mays] gi|223948299|gb|ACN28233.1| unknown [Zea mays] Length = 353 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 137/287 (47%), Gaps = 21/287 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + A D N D ++ + + + D +R Sbjct: 71 FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 129 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF+ + FT T G +V + DG + VDMGE Sbjct: 130 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 189 Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-- 176 PIL IP LA + + + G H+ VSMGNPH + F ++L Sbjct: 190 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVL 244 Query: 177 ---HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L+ G H MF N +V S L +R WERG G T ACG+ ACA V Sbjct: 245 QVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVV 304 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ + R V + GG L IEW D+NHV+MTG A+ + G + Sbjct: 305 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351 >gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] Length = 277 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + T AI D + ++ + D +RI Sbjct: 3 LTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120 IN DGSE + CGN +RC ++ +++FT ET+ G++ + I +VDM Sbjct: 61 INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G+P + IP+ + DK +D D G + V +G PH F+ DD+ Sbjct: 121 GKPFFKAQDIPMNVNMDKVIDVDLDINGETVTVS-----SVLLGVPHTEVFI-DDITKAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS + S Sbjct: 175 VTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFEK 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276 >gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] Length = 278 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 28/289 (9%) Query: 8 FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G GN + ++ C DN AI + + D ++LI A D Sbjct: 3 FTKMHGAGNDYVYVN---CFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116 +R+ N DGSE + CGNG+RCV ++ + +K + ET GIL + N+ + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKV 117 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172 V+MG P L IP+ + K+ + +I L F SMGNPH + FV Sbjct: 118 RVNMGRPRLTRSEIPMTGEAGAKVINEPLNI-------LHTTFHITCASMGNPHCVIFV- 169 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ ++ + +G ++ H +F N+ ++ S + RTWERG G T ACG+ A A Sbjct: 170 DDVENFQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAV 229 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA T + + + GG L +EW ++ ++MTG A + + G+++I Sbjct: 230 CVAGALNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278 >gi|194700330|gb|ACF84249.1| unknown [Zea mays] Length = 308 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 137/287 (47%), Gaps = 21/287 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + A D N D ++ + + + D +R Sbjct: 26 FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 84 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF+ + FT T G +V + DG + VDMGE Sbjct: 85 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 144 Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-- 176 PIL IP LA + + + G H+ VSMGNPH + F ++L Sbjct: 145 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVL 199 Query: 177 ---HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L+ G H MF N +V S L +R WERG G T ACG+ ACA V Sbjct: 200 QVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVV 259 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 VA+ + R V + GG L IEW D+NHV+MTG A+ + G + Sbjct: 260 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306 >gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] Length = 273 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + +++ DA Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESGTDAQ 57 Query: 64 IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115 I+ IIN DGS CGNG+RC +++ S +K ET G+ A +E++ Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L T ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613] Length = 273 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + +++ DA Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESDTDAQ 57 Query: 64 IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115 I+ IIN DGS CGNG+RC +++ S +K ET G+ A +E++ Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L T ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group] Length = 354 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 134/285 (47%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + A D N D ++ + + + D +R Sbjct: 72 FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGA-DYTMR 130 Query: 66 IINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF L + SF T G+++ + DG + VDMG+ Sbjct: 131 IFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQ 190 Query: 123 PILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--Y 176 PIL IP K + D G + VSMGNPH + F +L Sbjct: 191 PILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT-----CVSMGNPHCVTFGTKELKVL 245 Query: 177 HYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 H D L+ G H MF N V S L +R WERG G T ACG+ ACA V Sbjct: 246 HVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVV 305 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 VA+ + R V + GG L IEW D+NH++MTG A+ + G Sbjct: 306 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 350 >gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21] gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21] Length = 278 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + ++ C + D N +F D ++LI + A D Sbjct: 3 FTKMQGAGNDYVYVN---CFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116 +R+ N DGSE + CGNG+RCV ++ + + T ET GIL + + + Sbjct: 58 MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175 V+MG P L K IP+ +R P+N L N SMGNPH + FV DD+ Sbjct: 118 RVNMGPPRLTRKEIPMLGE----PEERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDV 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 173 DSFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++ + Sbjct: 233 CVLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278 >gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] Length = 273 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + +++ DA Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFV---RESDTDAQ 57 Query: 64 IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115 I+ IIN DGS CGNG+RC +++ S +K ET G+ A +E++ Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L T ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065] Length = 273 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 138/284 (48%), Gaps = 23/284 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + + D Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFVRE-SDTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ S +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 120 INMGEPIFEGEKI----SNEKEKIINKSIRENNKEYFITAF--HMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] Length = 277 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 138/282 (48%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM G+GN IL D +G + T AI D + ++ + D +RI Sbjct: 3 LTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120 IN DGSE + CGN +RC ++ +++FT ET+ G++ + I +VDM Sbjct: 61 INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G+P + IP+ + DK +D D G + V +G PH F+ DD+ Sbjct: 121 GKPFFKAQDIPMNVNMDKVIDVDLNVNGETVTVS-----SVLLGVPHTEVFI-DDITKAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS S Sbjct: 175 VTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFEK 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276 >gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] Length = 302 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 147/301 (48%), Gaps = 39/301 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF--DQIMLIHDFQDASVD 61 ++F KM G N L ID C N ++ +D +T D I+LI + A D Sbjct: 12 INFTKMHGCKNDYLYID---CTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSKAA--D 66 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFT-----FETIRGILVAKEN 111 +RI N DGSE + CGNG+RCV +F LT + + + T E GI+ EN Sbjct: 67 FRMRIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGII--PEN 124 Query: 112 R---------DGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 R +G++ +VDMG PI+ IP+ + ++ + +I + F Sbjct: 125 RIKVLQLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKDWYFT----C 180 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD DL G + +F N +V S L++R WERG Sbjct: 181 VSMGNPHAVTFV-DDTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGS 239 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 G T ACG+ ACAS A+ + V+V +LGG L+I++ H+FMTG + + G Sbjct: 240 GETLACGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGS 299 Query: 279 L 279 + Sbjct: 300 I 300 >gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272] Length = 279 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 113/235 (48%), Gaps = 9/235 (3%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103 FDQ++++ D +D RI N DGSEV CGNG RC RF L ++ T Sbjct: 47 FDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTAN 106 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G +V D + V+MGEP + +P +K ++ + VVSMG Sbjct: 107 GRMVLTVTDDDLVRVNMGEPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMG 161 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPH + V DD+ + + G +L H F E N+ +V E + LR +ERG G T Sbjct: 162 NPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQ 220 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 ACGS ACA+V + V V++ GG L I W H ++MTG A ++G Sbjct: 221 ACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 275 >gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 29/297 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA--FIR 65 F KM G+GN ++ M+ N A D +++ ++++++A +R Sbjct: 3 FEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----------LVAKENRD 113 I N DGSE + CGN +RC+ ++L T K T GI L+ + N Sbjct: 61 IYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEINLS 120 Query: 114 GSI-------SVDMGEPILDWKLIPLARSFDKMD--RDRFHIGPVNHLFLRNPFVVSMGN 164 G + V+M +P+L IPLA D+ D R R P +L VS G Sbjct: 121 GMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYGIYYLTE---VSTGP 177 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV++ L L G ++ KH +F G N+ +V S L ++ WERG G T A Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 CG+ ACA VVA+ N V++ GG L I W +N ++M G A+ + G+L+ Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294 >gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] Length = 286 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K G+GN +V+D +T D I + + H+ D I++ ++ A D Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFELTQDLIKKIC---DVHYGIGSDGILVKYNSDVA--DFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115 +RI N DGSE + GNG+R +FL + ++ FT ET GI+ AK +NR G Sbjct: 62 LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKI 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG+ I + K IP+ ++ ++ +G VS+GNPH + ++++L Sbjct: 122 ITVDMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEF----EVSCVSVGNPHCVI-IKENL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C VA Sbjct: 177 DEEEIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCG--VA 234 Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 S + K T+R + +KM+GG L I ++ ++ MTGE ++ Sbjct: 235 SVLVKKGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQE 274 >gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] Length = 301 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/290 (34%), Positives = 138/290 (47%), Gaps = 42/290 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHF--DQIMLIHDFQDASVD 61 KM G+GN L +D G + D A+ +D N D ++L+ ++A Sbjct: 17 LTKMHGLGNNYLFLD--GLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET----IRGILVAKENRDGS 115 +RI N DGSE + CGNG+RC+ R + R + + FT ET IR L + + Sbjct: 75 FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV--------------S 161 ++VDMG P L+ IP+A GP + P V S Sbjct: 135 VTVDMGVPRLERGAIPMA-------------GPAGERAVEVPLEVEAAGERRTFTVTALS 181 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + DD+ DLA G HP F + VN +V S + + +R WERG G Sbjct: 182 MGNPHCVV-FVDDVAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGP 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 T ACG+ ACA VA +T R V+V++ GG L I W ++ HV+MTG A Sbjct: 241 TLACGTGACAVAVAGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPA 290 >gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group] Length = 357 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 134/285 (47%), Gaps = 21/285 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + A D N D ++ + + + D +R Sbjct: 75 FVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGA-DYTMR 133 Query: 66 IINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF L + SF T G+++ + DG + VDMG+ Sbjct: 134 IFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQ 193 Query: 123 PILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--Y 176 PIL IP K + D G + VSMGNPH + F +L Sbjct: 194 PILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT-----CVSMGNPHCVTFGTKELKVL 248 Query: 177 HYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 H D L+ G H MF N V S L +R WERG G T ACG+ ACA V Sbjct: 249 HVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVV 308 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 VA+ + R V + GG L IEW D+NH++MTG A+ + G Sbjct: 309 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 353 >gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] Length = 268 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 16/245 (6%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 D ++LI + A V +R+ N DGSE +SCGNG+RCV ++ + FT ET+ G Sbjct: 28 DGMILICPSEVAPVK--MRMFNSDGSEGKSCGNGLRCVAKYAYEHKLVAETVFTIETLAG 85 Query: 105 ILVAKENRDGSI----SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 I+ A+ + I +DMG P L +P L R+ F NH ++ Sbjct: 86 IVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGETPFIREDFLYN--NHRYVFTG-- 141 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHA+ FV DD+ L + G +L H MF E VN+ + + ++ R WERG Sbjct: 142 VSMGNPHAVIFV-DDVEEAPLTTLGPVLETHEMFPERVNVEFIEIVNGNEMNFRVWERGS 200 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G+T ACG+ ACA+VVA+ K R ++V + GG L+I W + +V M G A+ G Sbjct: 201 GITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDLMIAWAEEGNVLMKGPAEVICRG 260 Query: 278 KLDIK 282 + K Sbjct: 261 VYEYK 265 >gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] Length = 298 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 116/240 (48%), Gaps = 36/240 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC+ RF L ++ +S+ T+ G ++ + DG ++ Sbjct: 67 DYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVA 126 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV----------SMGNP 165 VDMG P L +P PVN ++ P VV SMGNP Sbjct: 127 VDMGPPTLKGAEVPTKL-------------PVNADGAVVKQPLVVDGRTWLVTCVSMGNP 173 Query: 166 HAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 H + F E D + L G L H +F N +V S L +R WERG Sbjct: 174 HCVTFGEQDAKGVIKHVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERG 233 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 G T ACG+ ACA VVA+ + R V + GG L IEW + NNHV+MTG AK + G Sbjct: 234 AGPTLACGTGACAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293 >gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2] Length = 274 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 142/275 (51%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + + I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP---- 116 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K +P F + + + + + VV+MGNPHA+ V D L D+A G + Sbjct: 117 KFLPNEIPFVAEEPKALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] Length = 276 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ A FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET G++ + DG + V+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + +P ++ G L +SMGNPHA+ V D+ + Sbjct: 122 APRLQPEQVPFQAEQAALNYRVDVDGQSVELA-----ALSMGNPHAVLRV-DNTDDAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 271 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 16/278 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M+G+GN +V+D +T A+ L+ + HF DQ++L+ + +D RI Sbjct: 1 MQGLGNDFVVLDGVRQSIELTESAVRQLA---DRHFGIGCDQLLLVEKSDRSDIDFRYRI 57 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC VRF+ + + ET +GI++ + +G ++VDMG P+ Sbjct: 58 FNADGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPV 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D IP + G V + +SMGNPHA+ VE+ + + + G Sbjct: 118 FDPSEIPFDSDQPALTYPLDLDGNVVEIS-----AISMGNPHAVQVVEN-IETAPVETQG 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H F VN +V + LR +ERG G T ACG+ ACA+ VA + Sbjct: 172 PLIEHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDH 231 Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V+V GG L+I+W H V MTG A + G++++ Sbjct: 232 TVTVSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIEL 269 >gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] Length = 281 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + I L+ + FDQ++++ S D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC +F+ R + +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + D + L + VV+MGNPHA+ V D + D+A Sbjct: 122 YPKFLPQEIPFVADAPESLYD-IDLAGGEKLTID---VVNMGNPHAVTIVPD-VIAADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 177 RIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V +++ GG L IEW + + V+MTG +EG+LD++ Sbjct: 237 LSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277 >gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] Length = 279 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 136/283 (48%), Gaps = 21/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+K +G GN +++D H+ + + D + L+ + D +R Sbjct: 3 FSKWQGCGNDFVIVDFLD-HEPVDFAVLAREMCDRHFGVGADGLMAACPSETADVRMREF 61 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---VDMG 121 N DG+E + CGNG+RC R+L + + + FT ET+ G +V +DG++S VDMG Sbjct: 62 NPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLYHY 178 P+L+ IP+A + H+ + + VSMGNPH + FV DD + Sbjct: 122 IPVLEGARIPVAGFGTE------HVVAQPIMVAGKEYAMTCVSMGNPHCVVFV-DDADGF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 175 PLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK----EWEG 277 + +R ++++ GG + + W ++ H+ MTG A++ EW G Sbjct: 235 NNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEWPG 277 >gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] Length = 270 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 141/298 (47%), Gaps = 56/298 (18%) Query: 3 SSMVDFAKMEGIGN---------------KILVIDMRGCHDNITSDAINALSTDDNTHFD 47 + ++ F KM G GN + L ++ H I SD + + + D F Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKADFS 61 Query: 48 QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105 +RI N DGSE + CGN RC+ ++L + + T +T+ GI Sbjct: 62 ----------------MRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGI 105 Query: 106 LVAK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + K + + +++VDMG P D K P+ + K +S Sbjct: 106 KILKLHVEDGKVNTVTVDMGRP-ADMKEQPIEANGQKF----------------TGTTLS 148 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + FVED + +L S G L HP+F + +N+ A+V + +R WERG G+ Sbjct: 149 MGNPHLVIFVED-IKDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGI 207 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 T ACG+ ACA+ VA+ K+ R + M GG L IEW + +HV+MTG A + ++G+ Sbjct: 208 TQACGTGACATAVAAALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265 >gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822] gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis] Length = 303 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 139/294 (47%), Gaps = 26/294 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M +F KM G GN +V+D G +I A + D HF DQI+L+ A Sbjct: 8 MWNFTKMHGAGNDFVVLD--GVRQDIAMTPERARALADR-HFGIGADQILLVEPATQADA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++V Sbjct: 65 DFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPF---------VVSMGNPHA 167 DMG D +P FD G V +L + P V++ NPHA Sbjct: 125 DMGSTRFDPPSLP----FDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHA 180 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + V DD+ + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ Sbjct: 181 VQVV-DDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGT 239 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACA+V A + V V GG L ++W + + MTG A + G++DI Sbjct: 240 GACAAVAAGVRRGLLDSPVRVHTRGGMLTVDW-NGERLRMTGPAISVFSGQVDI 292 >gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G] Length = 279 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 9/235 (3%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103 FDQ++++ D +D RI N DGSEV CGNG RC RF L ++ T Sbjct: 47 FDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTAN 106 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G +V D + V+MGEP + +P +K ++ + VVSMG Sbjct: 107 GRMVLTVTDDDLVRVNMGEPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMG 161 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPH + V DD+ + + G +L H F E N+ +V E + LR +ERG G T Sbjct: 162 NPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQ 220 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 ACGS ACA+V V V++ GG L I W H ++MTG A ++G Sbjct: 221 ACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 275 >gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] Length = 288 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 26/280 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K G+GN +VID IT D I + + H+ D I++ + + D Sbjct: 6 FVKSHGLGNDYIVIDSENITFEITQDFIKKIC---DVHYGIGSDGILV--KYPSSVADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115 +RI N DGSE + GNG+R +FL ++ FT ET G++ AK +N+ G Sbjct: 61 LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKV 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG+ I + IP+ + ++ +G + VS+GNPH + ++ +L Sbjct: 121 ITVDMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEY----EVNCVSVGNPHCVI-IKKEL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC--ASV 233 ++ ++G+L+ HP+F +N+ + S + ++ WERG G T A GS++C ASV Sbjct: 176 NEEEIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASV 235 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + L K + +++KM+GG L I + ++ MTGE ++ Sbjct: 236 LVKKGLAKND--ITIKMIGGELKITVDKDWNIRMTGEVQE 273 >gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] Length = 277 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 20/282 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + + H+ D +++I+ A D Sbjct: 3 FTKMQGIGNDYVYVN---CLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + S + ET+ GI L ++ + + Sbjct: 58 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ Sbjct: 118 VDMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRMT----CVSMGNPHAVVFIDQDVKE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 174 FPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 234 LNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275 >gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] Length = 274 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 4/260 (1%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 KM+G+GN ++ID R + N++ D I + D DQ++ I + DA + N Sbjct: 7 KMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKN--SGKKDAELEFYNS 64 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGNG RCV L+ K T G L +K + + ++G +W Sbjct: 65 DGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKTNWDE 124 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL + + + + I N+ + +++GNPH +FF+ DD+ YDL G + Sbjct: 125 IPLKKDLNTKNLNIKIISKNNNEHIGGT-SINVGNPHVVFFI-DDIEDYDLKKIGPEIEN 182 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 H F E N+++A+V + + ++ WERG GLT ACG+AACA+VVA+ T++ V+ Sbjct: 183 HNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQADVE 242 Query: 250 MLGGGLLIEWHDNNHVFMTG 269 G L I +N + M G Sbjct: 243 FALGKLTISIDKDNSIHMKG 262 >gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] Length = 276 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 16/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F+K G+GN ++++ N D + + HF D ++ + ++ + Sbjct: 1 MQFSKWHGLGNDFVIVEP---EKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPLGGSAFE 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVD 119 +RI N DG+E + CGN RCV ++ FE T GI+ K +GS+ VD Sbjct: 58 --MRIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVD 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEP L IP+A + I F + VSMGNPHA+ FV D + + Sbjct: 116 MGEPHLLRGEIPVAGD-PASGAENLAIELPGRQF--SAVGVSMGNPHAVIFVPD-INAVE 171 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L +G + H +F N+ V S + +R WERG G+T ACG+ +CA+ VA Sbjct: 172 LEKWGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVT 231 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 +T R ++V + GG L I++ N NHV+MTG A + + G+ Sbjct: 232 GRTARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQ 271 >gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 286 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 150/283 (53%), Gaps = 19/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ G+GN + ++ ++++ + L+ +D N LI D + Sbjct: 3 FTKLHGLGNDYVYVNC--FEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERADFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSIS 117 R+ N DGSE ++CGNG+RCV +++ ++ +FT ET+ G + + + R ++ Sbjct: 61 RVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMGEP + IP+ ++ R+ +G VSMGNPHAI FV D++ Sbjct: 121 IDMGEPRFERAAIPMTGIPEEQVREEGIEVGGTAFTMT----AVSMGNPHAILFV-DEVK 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G ++ H F E N+ ++ + E + R WERG G+T ACG+ ACA+ VA+ Sbjct: 176 EEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAVAA 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 KT R V+V + GG L IEW + +N V+MTG A + + G+ Sbjct: 236 HLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGE 278 >gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 288 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+ GN + ID H NIT+ A D HF D ++LI D Sbjct: 7 FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 62 MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174 D+GEP L+ K+IP+ + D+ F PV L F VS GNPH FV D Sbjct: 122 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 173 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + D+ +G + +F N++ A + + +R WERG G T CG+ +V Sbjct: 174 VADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VA +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281 >gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 284 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+ GN + ID H NIT+ A D HF D ++LI D Sbjct: 3 FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 58 MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174 D+GEP L+ K+IP+ + D+ F PV L F VS GNPH FV D Sbjct: 118 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 169 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + D+ +G + +F N++ A + + +R WERG G T CG+ +V Sbjct: 170 VADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 229 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VA +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 230 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205] gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205] Length = 284 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH--DFQDASVDA 62 ++F KM G+GN +V+D+ + + I L+ FDQ++++ DF DA D Sbjct: 3 LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + +G ++ + N VV+MGNPHA+ V D L D+ Sbjct: 121 GPPKFLPAEIPFLTDEHEDTEGLYKLGLADNKSI-NIDVVNMGNPHAVTIVPDVLT-ADV 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 179 AGIGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 238 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG ++ +LD++ Sbjct: 239 LLANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280 >gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 284 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+ GN + ID H NIT+ A D HF D ++LI D Sbjct: 3 FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 58 MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174 D+GEP L+ K+IP+ + D+ F PV L F VS GNPH FV D Sbjct: 118 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 169 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + D+ +G + +F N++ A + + +R WERG G T CG+ +V Sbjct: 170 VADLDVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 229 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VA +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 230 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS] Length = 303 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 139/294 (47%), Gaps = 26/294 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M +F KM G GN +V+D G +I A + D HF DQI+L+ A Sbjct: 8 MWNFTKMHGAGNDFVVLD--GVRQDIAMTPERARALADR-HFGIGADQILLVEPATRADA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++V Sbjct: 65 DFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPF---------VVSMGNPHA 167 DMG D +P FD G V +L + P V++ NPHA Sbjct: 125 DMGSTRFDPPSLP----FDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHA 180 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + V DD+ + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ Sbjct: 181 VQVV-DDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGT 239 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACA+V A + V V GG L ++W + + MTG A + G++DI Sbjct: 240 GACAAVAAGVRRGLLDSPVRVHTRGGMLTVDW-NGERLRMTGPAISVFSGQVDI 292 >gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] Length = 277 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 20/282 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + + H+ D +++I+ A D Sbjct: 3 FTKMQGIGNDYVYVN---CLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + S + ET+ GI L ++ + + Sbjct: 58 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ Sbjct: 118 VDMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRMT----CVSMGNPHAVVFIDQDVKE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 174 FPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 234 LNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275 >gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 270 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 143/286 (50%), Gaps = 33/286 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + I+ C + I + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYIN---CFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS---IS 117 +R+ N DGSE Q CGNG+RCV +++ +++ F ET GI K DG I+ Sbjct: 58 MRMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRIT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P + + +P + M+ + IG +SMGNPHAI+++ D + Sbjct: 118 VDMGVPEVTSQ-VPEPIWVNGMEYE--FIG------------ISMGNPHAIYYM-DFIDG 161 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G H F E N +V + + +R WERG G T ACG+ A AS VAS Sbjct: 162 LDLEAIGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASA 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 +T V V++ GG L I W + HVFMTG A + +EG+ DI Sbjct: 222 LSGRTAHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267 >gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + +++ DA Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESDTDAQ 57 Query: 64 IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115 I+ IIN DGS CGNG+RC +++ S +K ET G+ A +E++ Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L ++ V + GG L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYIGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 284 Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 13/247 (5%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 DQI+L+ + D RI N DG EV+ CGNG RC VRF+ + E Sbjct: 39 DQILLVENATRPDADFRYRIFNADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHT 98 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPL-ARSFDKMD--RDRFHIGPVNHLFLRNPFV-- 159 +L K + DG + VDMG PI + + IP A + ++ ++ +NH + V Sbjct: 99 VLTLKSHPDGQVEVDMGAPIFEHRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSV 158 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 +SMGNPHA+ V D+ + G + + F + VN +V + + LR +ERG Sbjct: 159 LSMGNPHAVQVV-GDVDSAPVLEEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGA 217 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKE 274 G T ACG+ ACA+VV+ + V V GG L+I W + V MTG A Sbjct: 218 GETLACGTGACAAVVSGIRRGLLDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTV 277 Query: 275 WEGKLDI 281 +EG+ +I Sbjct: 278 FEGETEI 284 >gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] Length = 280 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 150/296 (50%), Gaps = 38/296 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 M++ M +F KM+G GN + +D C D + HF D ++LI + Sbjct: 1 METDM-EFTKMQGTGNDYVYVD---CFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSR 56 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAK-E 110 A D + + N DGS+ CGNG+RCV ++ L R KR + T ET+ GI + E Sbjct: 57 TA--DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKR-TITVETLAGIKTLELE 113 Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 DG S++VDMGE L +L P + D + RF +G +++GNPHA Sbjct: 114 IEDGKAVSVTVDMGEAALTSRL-PEDITVDGKEY-RF-VG------------INVGNPHA 158 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 I++V D + DL G H F+ + VN V + L++R WERG G T ACG Sbjct: 159 IYYV-DQVDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACG 217 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + A ASV+AS + T V + GG L+I + ++ H+FMTG A + + G +DI Sbjct: 218 TGATASVMASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDI 273 >gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 307 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 15/285 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D N+T+ + AL+ N HF DQ++L+ VD Sbjct: 5 FTKMHGAGNDFVVLDGYTQPVNLTTAQVRALA---NRHFGVGADQLLLVEKPTVEGVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDMG Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ D +L+P A + R+ + P++ + R VVSMGNPHA+ V DD + Sbjct: 122 TPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEAFP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+ A Sbjct: 181 VLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIRR 240 Query: 240 HKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + M G A +EG++++ Sbjct: 241 GLLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIEL 285 >gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] Length = 279 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 13/275 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D ++ S+ I L+ FDQ++++ + VD RI Sbjct: 10 FTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDFNYRI 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123 N DG EV+ CGNG RC RF+ + ++ T GI+ + N G + VDMG P Sbjct: 70 FNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGII--QLNLQGDFVQVDMGVP 127 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K IP + + D++ FH V L VV+MGNPHA+ V ++ +A Sbjct: 128 KTSPKEIPFSAATDEI----FHFLKVGDQTLTIS-VVNMGNPHAVLQV-SNVETAPVAQI 181 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ HP F VN+ V S + LR +ERG G T ACG+ ACA+ VA + Sbjct: 182 GPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAGLLD 241 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 V V++ GG L I+W V M G A K +EG Sbjct: 242 SPVKVELAGGELQIQWAGIATSVIMEGPATKVYEG 276 >gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 295 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 18/270 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG HD + D + + F+Q+ +I D DA+ Sbjct: 29 IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVISDGDDAAA 88 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 R N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 89 RVAFR--NPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P LDW+ +P++ + D + + P+ P SMGNPH FFV DD+ D+ Sbjct: 147 GAPRLDWQDVPVSEAVDTL------VLPLPGA----PAACSMGNPHCTFFV-DDVAALDI 195 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 + V V GG + ++W VF++G Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGP 285 >gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21] gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21] Length = 289 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/290 (31%), Positives = 137/290 (47%), Gaps = 23/290 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM+G GN L ++ C D + + I+A + + LI D +R Sbjct: 3 FTKMQGCGNDYLYVN---CMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKADFRMR 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG---SISVD 119 + N D SE CGNG RC+ +F+ + ++ T ET+ GI +A + DG S +VD Sbjct: 60 MFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATVD 119 Query: 120 MGEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 MG PI D IP+ + D+ P L LR V SMGNPH + FVED + Sbjct: 120 MGVPITDPSSIPMTWEKSICLDETITVTVDGAP---LSLRGTGV-SMGNPHFVTFVED-V 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G ++ F E VN+ + + R WERG G T ACG+ ACA Sbjct: 175 ATAPVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYT 234 Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L K R ++V+ +GG L + + + H+ M G A +EG+++I Sbjct: 235 AITLGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284 >gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] Length = 284 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ID MR + AI +D + +I ++ S + Sbjct: 5 IEFTKMHGAGNDYIYIDTMRFPIAHPEKLAI--AWSDRHKGIGGDGIILIGKNESGYFTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117 RI N DGSE + CGNG+RCV ++L K +T+ G + +N+ ++ Sbjct: 63 RIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVEVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL K LA M IG N+ R FV SMGNPH I F+ + + Sbjct: 123 VDMGEPILADKH-QLATPDGSMKDGEVTIGHTNY---RGTFV-SMGNPHFINFI-NGVEE 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ + G L + +F E N+ A + S+ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 YDVQTNGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVAAA 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + R ++ M GG L I W++N NH++MTG A + G +++ Sbjct: 237 LTGRAGRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIEL 281 >gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] Length = 286 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 39/297 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNTHF---DQIMLI 52 M ++ + F K+EG+ N LV+D+R + + + +A D D ++LI Sbjct: 5 MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRG-----IL 106 Q A A + ++N DGS + CGNG+RCV L R +R +F +T G + Sbjct: 65 GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRPCAVT 124 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 A + + V+MG + I + + D R + V +GNPH Sbjct: 125 RAPGSASARVRVEMGT-----RRITGEHTLELEDAPRTFV------------AVDVGNPH 167 Query: 167 AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEG-VNLSIARVTSLESLDLRTWERGVGLTAA 224 AI FV+ LA S G + HP+F+ N+ AR + S+ L WERGVG+TAA Sbjct: 168 AIAFVDASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAA 227 Query: 225 CGSAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA++ A+ +H+ +AV +++ GG L IE + + MTG A+ + G Sbjct: 228 CGTGACATLAAA--IHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRG 282 >gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] Length = 274 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 26/288 (9%) Query: 6 VDFAKMEGIGNKILVI-----DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +DF KM+G GN +VI D +G + + A N D I+L+ + + Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEETL---AKNLCHRKFGIGADGILLVR--KSSVA 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRD 113 D + IIN DGS CGNG+RC R++ + +K+ ET GI +A ++ Sbjct: 56 DIKMDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEV 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I+++MG K IPL+ + +++D +I + + +G PH I Sbjct: 116 LGITINMGNFSFQPKDIPLSINEKIINKD-ININSTEYKITS----MKLGVPHTIVMCNI 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D D+ G + KH +FSEG N++ V ++ ++TWERG G T ACG+ +CASV Sbjct: 171 D--DVDVTE-GKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASV 227 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VAS L V + GG L IE + VFMTG A+ +EGK++I Sbjct: 228 VASNTLGYIGNRCKVIVPGGELFIEVK-GDIVFMTGPAEIVFEGKINI 274 >gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri] gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri] Length = 327 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 142/307 (46%), Gaps = 47/307 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQ---------IMLIHDFQD 57 +FAK +G+GN ++ID R SDA+ + D+ I + Sbjct: 36 EFAKYQGLGNDFVLIDNR------ASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPG 89 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDG 114 D +R+ N DGSE + CGNG+RC+ RF++ RK + T+ G++ + DG Sbjct: 90 TDEDYSMRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRK-YKVWTLAGLIQPELRADG 148 Query: 115 SISVDMGEPILDWKLIP--LARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFF- 170 ++VDMG+P+L+ +P LA + D R I L VSMGNPH + F Sbjct: 149 QVAVDMGKPVLEPANVPTKLAATKDSAAVRCEMDIDGEKWLVT----AVSMGNPHCVTFG 204 Query: 171 ---------------VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 VED + L+++G H F N V + + + W Sbjct: 205 RAGDGELGADGPGLKVED----FALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVW 260 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274 ERG G T ACG+ ACA+VVA + +R V++ GG L I W + + +V MTG A+ Sbjct: 261 ERGAGATLACGTGACATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPV 320 Query: 275 WEGKLDI 281 + G + + Sbjct: 321 FTGVITV 327 >gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545] Length = 262 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 17/233 (7%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+ N DG+E + CGNG+RC+ F+ + +++ T+ G++ + DG ++V Sbjct: 33 DYAMRMFNSDGTEPEMCGNGIRCLANFVAAIDDADPRAYKVGTLAGLIQPECKPDGQVAV 92 Query: 119 DMGEPILDWKLIP--LARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 DMG P L +P LA + D + + + L VSMGNPH + F + Sbjct: 93 DMGVPTLTPADVPTKLAATEDGAAVKSQMTVDGATWLAT----AVSMGNPHCVTFGREKG 148 Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + DLA+ G H F N V + + +R WERG G T ACG+ Sbjct: 149 DEKGLAVDDMDLAAIGPSFESHETFPARTNTEFVEVVRRDYVKMRVWERGAGATLACGTG 208 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ACA+VVA +T+R +V++ GG L IEW + ++ V MTG A+ + G++D Sbjct: 209 ACATVVAGVLEGRTDRKCTVELPGGPLEIEWRESDSRVIMTGPAELVFYGEID 261 >gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268] gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268] Length = 275 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 40/291 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG+GN + ++ + + + A D HF D ++LI A DA+ Sbjct: 3 FTKMEGLGNDYVYVN--AFTEKVENPGELARRIADR-HFGVGGDGLILIEPSDKA--DAY 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115 + + N DGSE CGNG+RCV +++ +R+ ET GI + K+ + Sbjct: 58 MHMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKDGKMEK 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 +VDMGE LD +L + + ++ F+ + +GNPHA++F+ED+ Sbjct: 118 ATVDMGEVKLDGEL-----------PENIEVRGMSLQFVG----IDVGNPHAVYFLEDNP 162 Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + DL G +HP F + VN +V S + R +ERG G T ACG+ Sbjct: 163 ELSVSSVSELDLEKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTG 222 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 A A+VVA + + +V +LGG L I + H FMTG A++ + G+ Sbjct: 223 ATAAVVAGILMGRLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGE 273 >gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 269 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 18/277 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG HD + D + + F+Q+ +I D DA+ Sbjct: 3 IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGNDAA- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 62 -ARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ +PL+ + D + P SMGNPH FFV DD+ D+ Sbjct: 121 GAPRLGWQDVPLSEAIDTLALP----------LPGAPAACSMGNPHCTFFV-DDVGTIDI 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V V GG ++++W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSG 266 >gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 246 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 15/254 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCL 239 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V + G L Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 240 HKTNRAVSVKMLGG 253 + V V++ GG Sbjct: 235 AEE---VRVELPGG 245 >gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] Length = 276 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 22/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +VID ++T+ + ++ DQ++L+ ++D Sbjct: 3 IAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + + +T GI+ + DG I+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDMGV 122 Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P IP + ++D + IG VSMGNPH + V + Sbjct: 123 PRFAPHQIPFKVDQEADYYSLELDGQQVEIG-----------AVSMGNPHCVLRVPA-VD 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+ V Sbjct: 171 TAPVAHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIG 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W D V+M+G A+ ++G +++ Sbjct: 231 KRRGWLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276 >gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)] Length = 281 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 26/292 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLIYFKK-YLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV FL ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKM------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 VDMG PI K IP +K ++ ++ VV++GNPH + V Sbjct: 122 VDMGTPIFTPKNIPFITKTEKFFYSIIFNKKKYFFS-----------VVTLGNPHCVIQV 170 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 ++L ++ + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA Sbjct: 171 -NNLKNFPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACA 229 Query: 232 SVVASGCLHK-TNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280 + VA G +K + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 230 A-VAIGIRNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280 >gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] Length = 284 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 13/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +V+D ++T + L+ + HF DQI+++ + D Sbjct: 3 IKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLA---DRHFGIGADQILVVEPAEAGEAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V+F+ ++ ++K +T++G++ + DG + V Sbjct: 60 FKYRIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVS 119 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177 MG P + +P + + F V + F V SMGNPH + V DD+ Sbjct: 120 MGTPSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIES 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + HP F VN+ + + ++R WERG G T ACG+ CA+ S Sbjct: 179 APVKELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 L + + GG L + W + V + G A ++ ++++ Sbjct: 239 ELGVLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284 >gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 286 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K G+GN +V+D +T I + + H+ D I++ +D A D Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKIC---DVHYGIGSDGILVKYDSDVA--DFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115 +RI N DGSE + GNG+R +FL + FT ET GI+ AK +N+ G Sbjct: 62 LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKI 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG+ I + K IP+ ++ ++ +G + F N VS+GNPH + ++++L Sbjct: 122 ITVDMGKAIFNAKQIPINTDKEEFISEKITVG--DKEFEVN--CVSVGNPHCVI-IKENL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C VA Sbjct: 177 DEEEIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCG--VA 234 Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 S + K +R + +KM+GG L I ++ ++ MTGE ++ Sbjct: 235 SVLVKKGLADREIKIKMIGGELKISIDEDWNIKMTGEVQE 274 >gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] Length = 289 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 148/290 (51%), Gaps = 31/290 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ G + + + A D HF D ++LI D Sbjct: 7 FTKMQGIGNDYVYVN--GFEERVDNPGELAKRISDR-HFGVGSDGLVLI--LPSGVADLR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV------AKENRDGS 115 +R+ N DGSE + CGN RCV ++ + + ET GI + A E R Sbjct: 62 MRMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVR--G 119 Query: 116 ISVDMGEPILDWKLIP--LARSF-DKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFF 170 +VDMGEP+L LIP LA + + D RF PV + R V VSMGNPHA+ F Sbjct: 120 ATVDMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVE-VGGRTYAVTAVSMGNPHAVVF 178 Query: 171 VE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 ++ DDL DL G L HP+F + N V S + +R WERG G T ACG+ Sbjct: 179 MQGIDDL---DLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTG 235 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 ACA+ VAS T R++ V++ GG L I+W ++HV+MTG A ++G Sbjct: 236 ACAAAVASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDG 285 >gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] Length = 276 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I + D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAK-MWGDRHTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L+P F ++ + V+ + + VSMGNPHA+ V D + + Sbjct: 121 GAP----RLVPADIPFQAPEQALSYQVDVDGTPV-DLAAVSMGNPHAVLRVSD-INTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276 >gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836] Length = 279 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 150/286 (52%), Gaps = 23/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN I M G I + A+ N +F D ++LI +++ D Sbjct: 4 LKFTKMHGAGND--YIYMNGFIQEIEDPSALAIRLS-NRNFGIGSDGLVLILPSENS--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 +++ N DGSE + CGN RCV +++ +K ET G+ L+ + + Sbjct: 59 FRMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARK 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMGEPILD IP+ K+D++ P++ + VSMGNPHA+ F Sbjct: 119 VTVDMGEPILDPVQIPV-----KVDKEPVLNFPLDIDGKIWEISCVSMGNPHAVVFT-TG 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL G KHP+F N V ++L++R WERG G T ACG+ ACA+ V Sbjct: 173 IKELDLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A+ +R +++ ++GG L IEW + NNHV+MTGEA +EG++ Sbjct: 233 AAILNGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278 >gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] Length = 241 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 126/239 (52%), Gaps = 9/239 (3%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103 FDQ++L+ + VD RI N DGSEV+ CGNG RC RF+ + +K ET Sbjct: 9 FDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKG 68 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 GI+ + DG ISVDMG P +L+P F ++ + + V+ + VSMG Sbjct: 69 GIIELEIRSDGQISVDMGPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMG 123 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ V DD+ + + + G + +P F VN+ V + LR WERG G T Sbjct: 124 NPHAVLRV-DDINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQ 182 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ACG+ ACA+ VA+ + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 183 ACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 241 >gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] Length = 288 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 136/287 (47%), Gaps = 28/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V D G + +T D HF DQI+++ VD Sbjct: 16 FTKMHGLGNDFVVFD--GVNQTVTLTPERCRRIADR-HFGVGCDQILVVEKPTRPDVDFR 72 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG ++VDMG Sbjct: 73 YRIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDMG 132 Query: 122 EPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 P +P + K+ + R I VVSMGNPHA+ V +DL Sbjct: 133 APRFAPAEVPFVAEAEALTYPLKIGQHRLDIA-----------VVSMGNPHAVLRV-NDL 180 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G ++ H F + VN +V + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 181 DSAPVDILGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVS 240 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VSV GG L+IEW V MTG A+ +EG+L++ Sbjct: 241 GIRQGALASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287 >gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens] gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 276 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/282 (33%), Positives = 134/282 (47%), Gaps = 12/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLIVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+M Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + G L VSMGNPHA+ V D + + Sbjct: 121 GAPRLVPADIPFQAPAQALSYQVDVDGATVELA-----AVSMGNPHAVLRVAD-INSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 269 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 127/278 (45%), Gaps = 20/278 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG HD + D + + F+Q+ +I D DA Sbjct: 3 IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGDDAV- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 62 -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHYD 179 G P L W+ +P++ + D + L L P SMGNPH FFV DDL D Sbjct: 121 GAPRLGWQDVPVSEAVDTL-----------ALPLPGAPAACSMGNPHCTFFV-DDLRAID 168 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A+ G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 169 VATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRR 228 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V V GG + ++W VF++G + G Sbjct: 229 GLLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSG 266 >gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] Length = 269 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104 DQ++L+ D RI N DGSE CGNG RC RF+ R + E Sbjct: 38 DQVLLVEPPGQPEADFRYRIFNADGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSS 97 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++ + + + VDMG P+ IP R+ + + G + V+SMGN Sbjct: 98 LMTLRLRENHEVEVDMGAPLFTPADIPFRRAETAPEYELTAAGETLRVG-----VLSMGN 152 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ V +D+ L G + H F E N V + LR +ERGVG T A Sbjct: 153 PHAVLRV-NDVNDGSLERLGEAIRSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEA 211 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 CGS ACA+VV + + V+V++ GG L I+W D++ V MTG +EG + + Sbjct: 212 CGSGACAAVVYGRRMGWLDDRVTVELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269 >gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] Length = 290 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 144/294 (48%), Gaps = 26/294 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-----FDQIMLIHDFQD 57 + MV F+KM G+GN +VID + I D + T D ++ + Q Sbjct: 2 TRMVMFSKMHGLGNDYVVID-ESTQECIPEDKKPEFVREVCTRGFSVGADGVIFV---QP 57 Query: 58 ASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN-- 111 A+ D IR I N DGSE + CGNG+RC +F+ + ++++ ET+ GI + Sbjct: 58 AAGDGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIG 117 Query: 112 RDGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DGS+ VDMG IP+ + DRF PV ++ +S+GNPHA+ Sbjct: 118 DDGSVVSSRVDMGTATFKTDQIPMDVGECEF-IDRFL--PVEGEDIKLT-ALSVGNPHAV 173 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV DD DL G + HP+F E +N+ V + + TWERG G T ACG+ Sbjct: 174 IFV-DDTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTG 232 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 A ASV+A L K + +V V + GG L I+ + +M G+A ++G L Sbjct: 233 ATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286 >gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 281 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 20/289 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLIYSKK-YLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV FL ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174 VDMG PI K IP K ++ + I +F + + VV++GNPH + V ++ Sbjct: 122 VDMGTPIFTPKNIPFI---TKTEKFFYSI-----IFNKKKYFFSVVTLGNPHCVIQV-NN 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L ++ + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA+ V Sbjct: 173 LKNFPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAA-V 231 Query: 235 ASGCLHK-TNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280 A G +K + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 232 AIGIRNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280 >gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] Length = 273 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 141/286 (49%), Gaps = 27/286 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + +++ DA Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFV---RESDTDAQ 57 Query: 64 IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS---- 115 I+ IIN DGS CGNG+RC +++ S +K ET G+ A + +G Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L T ++ V + G L IE +N+ VFM G A + G++D+ Sbjct: 229 SNLLGYTGKSTEVILPEGKLFIEIKENS-VFMKGPADICFRGEIDV 273 >gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT] gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT] Length = 274 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 34/292 (11%) Query: 6 VDFAKMEGIGNKILVI-----DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +DF KM+G GN +VI D +G D++ + D I+L+ + + Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRF---GIGADGILLVR--KSSVA 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRD 113 D + IIN DGS CGNG+RC R++ + +K+ ET GI +A E+ Sbjct: 56 DIKMDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEV 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIF 169 I+++MG + IPL+ + +++D +I + + L P V M N H + Sbjct: 116 LGITINMGNFSFEPVDIPLSVNEKIINKD-VNINNKEYKITSMKLGVPHTVVMCNIHDVD 174 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 VE G + K+ +FSEG N++ + +++ ++TWERG G T ACG+ + Sbjct: 175 VVE-----------GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGS 223 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CASVVAS L V + GG L IE D + VFMTG A+ +EGK+++ Sbjct: 224 CASVVASNTLGYVGNKCKVIVPGGELFIELKD-DVVFMTGPAEIVFEGKINL 274 >gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 276 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 141/288 (48%), Gaps = 30/288 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +V+D G ++ A D HF DQI+L+ +D Sbjct: 5 FVKMHGLGNDFVVLD--GVRQSVVLTAPQLRHLADR-HFGIGCDQILLVEPASQPGIDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VRF+ + ++ ET+ G++ + DG+++VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P+ IP + + + V L + + + V MGNPHA+ V D Sbjct: 122 VPVFASAQIPFVAATEDL---------VQTLRVADEDIAITAVGMGNPHAVQVVAD---- 168 Query: 178 YDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DLA G L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ V Sbjct: 169 VDLAPVERQGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAV 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 A + V V GG L I W+ + V MTG A ++G++++ Sbjct: 229 AGIARGLLDSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276 >gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] Length = 271 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 112/236 (47%), Gaps = 30/236 (12%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC RF L + SF T G+++ + DG + Sbjct: 43 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVK 102 Query: 118 VDMGEPILDWKLIPLARSFDK----------MDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 VDMG+PIL IP K +D + + VSMGNPH Sbjct: 103 VDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQV-----------TCVSMGNPHC 151 Query: 168 IFFVEDDL--YHYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 + F +L H D L+ G H MF N V S L +R WERG G T Sbjct: 152 VTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGAT 211 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 ACG+ ACA VVA+ + R V + GG L IEW D+NH++MTG A+ + G Sbjct: 212 LACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 267 >gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf] gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf] Length = 273 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/284 (32%), Positives = 137/284 (48%), Gaps = 23/284 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G GN +V+D R ++ N HF D I+ + + D Sbjct: 3 FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFVRE-SDTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117 + IIN DGS CGNG+RC +++ S +K ET G+ A + +G I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 120 INMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + G L IE +N+ +FM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKENS-IFMKGPADICFRGEIDV 273 >gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23] gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23] Length = 267 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 137/287 (47%), Gaps = 34/287 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G GN + +D + + + +I D ++LI D Sbjct: 2 SKIHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116 +RI N DGSE CGN RC+ ++L R T+ G+ V + DG S+ Sbjct: 62 TMRIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEIRLLTLSGVKVLSLHVTDGFVESV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVED 173 +VDMGEP+L+ + +F L RNP VSMGNPH + F +D Sbjct: 122 TVDMGEPVLE-------------NESQF-------LPSRNPGHGTFVSMGNPHYVIFTDD 161 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + G L HP F + N+ ARV + + R WERG G+T ACG+ ACA+ Sbjct: 162 V---DQVGEAGPALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATA 218 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VA+ K +R + M GG L IEW + +NHV+MTG A+ +G++ Sbjct: 219 VAAALTGKASRTSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEI 265 >gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] Length = 274 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 139/279 (49%), Gaps = 12/279 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID + IT+ + L+ D T DQ+++I +D R Sbjct: 3 FTKMHGLGNDFVVIDAVTQNVRITASMVRRLA-DRKTGIGCDQVLVIEPPSAVDIDFNYR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I NCDG+EV+ CGNG RC+ RF+ R +KS +T ++ ++VDMG P Sbjct: 62 IFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGVP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LD IP F + + VN R VSMGNPHA+ V D + +A Sbjct: 122 ELDPPAIP----FQATEAASLYDIDVNGQVQRIA-AVSMGNPHAVLTVAD-INTATVAEL 175 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H F VN+ ++ + LR +ERGVG T ACGS ACA+ VA+ + Sbjct: 176 GAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELVD 235 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V+V + G L I+W + + M+G AK + G++ I Sbjct: 236 SPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274 >gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] Length = 277 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 25/286 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM G+GN +VID +++ + + L+ + H DQI+LI + D Sbjct: 5 FTKMHGLGNDFIVIDAVNQQISLSPEQLRRLA---DRHLGVGCDQILLIEK-AEGDADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC VR++ ++ ET+ G+++ + DG ++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P D IP P L L + V VSMGNPHA+ V DL + Sbjct: 121 VPKFDPVEIPFIAE---------QRAPTYSLSLDDRQVEISSVSMGNPHAVQVV-SDLDN 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ KH F + VN +V + LR +ERG G T ACG+ ACA+ VA Sbjct: 171 APVLTEGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGI 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V G L I W +N V+MTG A ++G+++++ Sbjct: 231 QRGLLESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276 >gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] Length = 326 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 104/330 (31%), Positives = 149/330 (45%), Gaps = 78/330 (23%) Query: 8 FAKMEGIGNKILVIDMR--------GCHDNITSDAI-NALSTDD-NTHFDQIM-LIHDFQ 56 F K G+GN LV+D+R G + S A+ AL D IM ++ Sbjct: 3 FGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPALG 62 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENR 112 D DA +R++N DGSE + CGNG+RCVV++L R R++ ET G+L + +R Sbjct: 63 DG--DARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAHR 120 Query: 113 ------DGSI------SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-- 158 DG I +VDMG P L+ IP+ GP + P Sbjct: 121 SDTALGDGGIAAIEQVTVDMGRPRLERAQIPMH-------------GPAEERCISEPLAI 167 Query: 159 --------VVSMGNPHAIFFVEDDLYHYDLASFGNL----LAKHPMFSEGVNLSIARVTS 206 VSMGNPHAI FV D++ + + L L +HP F N+ +A + Sbjct: 168 AGRPLDITAVSMGNPHAIAFV--DVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRR 225 Query: 207 LES---------------LDLRTWERGVGLTAACGSAACASVVASGCL---HKTNRAVSV 248 ++L WERG G+T ACG+ ACA+ VA+ CL + A++V Sbjct: 226 APQSAADDDGDSADSPTVIELVVWERGCGITLACGTGACATAVAA-CLTGRARPGEAITV 284 Query: 249 KMLGGGLLIE-WHDNNHVFMTGEAKKEWEG 277 +LGG L I + + V M G A ++G Sbjct: 285 HLLGGPLAITVGAELDSVRMRGPATHVFDG 314 >gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] Length = 261 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 121/241 (50%), Gaps = 17/241 (7%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101 FDQ++++ D D RI N DGSEV+ CGNG RC RF+ RMK + S + T Sbjct: 29 FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSVSVST 86 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV 159 +G +V D ++V+MG P + IP F ++ +I LF Sbjct: 87 KKGKMVLSIEEDDQVTVNMGVPEFEPSKIP----FKAKQTEKTYILRTEDKTLFCG---A 139 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPH + V DD+ D+ + G LL H F E VN +V + ++LR +ERG Sbjct: 140 VSMGNPHVVT-VVDDVATADVDTLGPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGA 198 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 G T ACGS AC +V + V V + GG L I+W ++MTG A ++G+ Sbjct: 199 GETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSLNIQWQGVGKPLYMTGPATHVFDGQ 258 Query: 279 L 279 L Sbjct: 259 L 259 >gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36] gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36] Length = 269 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 138/276 (50%), Gaps = 12/276 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68 M G+GN +V+D + +D I L+ D NT FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDCVTQNVFFNNDNIRRLA-DRNTGIGFDQLLVVEAPYDPDLDFHYRIYN 59 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DGSEV+ CGNG RC F+ + + T G + + DG ++V+MG P L Sbjct: 60 ADGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELA 119 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 IP + K ++ + +F V++GNPH + V DD+ LA G+ Sbjct: 120 PDKIPFRAT--KQEKTYILRALDSTVFCG---AVAIGNPHCVTIV-DDIETAPLADLGHA 173 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 +A H F VN +V S + LR +ERGVG T ACG+ ACA+ V K + V Sbjct: 174 IAHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDV 233 Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +++ GG L I W VFMTG A ++G+++I Sbjct: 234 CIELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269 >gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50] Length = 224 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 9/230 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224 >gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1] Length = 292 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 20/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM GIGN + ++ C + S+ ++ + +D L+ D +R Sbjct: 3 FTKMHGIGNDYIYVN---CFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKADFRMR 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119 I N DGSE CGN RC+ +++ + ++ T ET GI L A +++VD Sbjct: 60 IFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178 MG+ +L K IP+ D DRF PV + VSMGNPHA+ FV D Sbjct: 120 MGKAVLVPKDIPV-----NSDLDRFISQPVEADGRTWSVTCVSMGNPHAVIFV-GDTDSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236 DL G H +F + +N +V +L +R WERG G T ACG+ ACAS VA+ Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + + + GG L I + + V M G A+ +G++ Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEV 276 >gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] Length = 281 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 141/299 (47%), Gaps = 39/299 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 S+M+ F KM G GN + ++ + A HF D ++LI D Sbjct: 2 STMIHFTKMHGAGNDYIYVNTL---SEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDT 58 Query: 59 S-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KE 110 S D + I N DGSE CGN RC+ ++L + +K ET+ GI + Sbjct: 59 SQADFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDAN 118 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL------RNPFVVSMGN 164 N S++VDM EP + + F NH L + VSMGN Sbjct: 119 NHVASVTVDMLEPQFN-----VPEQFTG-----------NHPSLSAIPGAQEGIFVSMGN 162 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH + FV DD++ DL G L F + N+ A++T+ +L R WERG G+T A Sbjct: 163 PHYVIFV-DDIHAIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMA 221 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 CG+ ACA+ A+ +T R V++ M GG L +EW DNNH++++G A +EG + + Sbjct: 222 CGTGACATATAAIQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALP 280 >gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 273 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 21/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---DQIMLIHDFQDASVDAFI 64 F KM+G GN +VID R + + + A D D I+L+ + A + I Sbjct: 3 FTKMQGTGNDFIVIDDRK-NSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQIKMII 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRD-GSISV 118 +N DGS CGNG+RC +++ +K +S T ET G+ ++ EN +++ Sbjct: 62 --MNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVTI 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P + + IP AR +++ R + + N + MG PH I F L Y Sbjct: 120 NMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLEDY 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + K F +G N++ V S + ++TWERG G T ACG+ +CASV+A+ Sbjct: 173 NVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAANK 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 232 LSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273 >gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] Length = 273 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 23/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G GN +V+D R + N HF D I+ + + + + Sbjct: 1 MEFTKMTGNGNDFIVLDDR--KGELIGKEKELAQKLCNRHFSIGADGILFVRE-SNTNAQ 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGS 115 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ Sbjct: 58 IQMVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKY 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+++MGEPI + + I S +K I N + F MG PH I F +L Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ G + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A Sbjct: 170 DEYDIEE-GKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L T ++ V + GG L IE + +FM G A + G++D+ Sbjct: 229 ANLLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273 >gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] Length = 307 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 142/313 (45%), Gaps = 47/313 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHF----DQIMLIHDFQDASVDA 62 F KM G GN + +D G + I + ++ + HF D ++ I+ D S+D Sbjct: 3 FTKMHGCGNDYVYVD--GSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-------------LTSRMKRKSFTFETIRGILVAK 109 + + N DGS + CGNG+RCV ++ + S K+K E + Sbjct: 61 EMEMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVIVSAGKKKYINLE------IGT 114 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFD-KMDRD------RFHIGPVNHLFLRNPFV--- 159 +N S+ VDMG PIL +P+A D DR R + + + + P + Sbjct: 115 DNLVFSVKVDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDG 174 Query: 160 -------VSMGNPHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL 210 VSMGNPHA+ F+ +D L +++ G + +F N +V ++ Sbjct: 175 KEWKITCVSMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNV 234 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMT 268 +R WERG G T ACG+ CA+ VA T+ V+V +LGG + W N + V M Sbjct: 235 HMRVWERGTGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIME 294 Query: 269 GEAKKEWEGKLDI 281 G A + G++D+ Sbjct: 295 GPATTVFTGEIDL 307 >gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 261 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 10/256 (3%) Query: 30 ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 +TS I LS FDQ++L+ D RI N +G+EV+ CGNG RC FL Sbjct: 12 LTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQCGNGARCFGLFL 71 Query: 89 TSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 + L + + I V+M EP D+K L+ + +D + F I Sbjct: 72 LLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEP--DFKFYNLSSLQNVLDNN-FSI 128 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 +N + N +VS+GNPH I V+ + + + GN + K+P+F EGVN+S + + Sbjct: 129 KLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNIIGNNIEKNPIFPEGVNVSFMEILN 185 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHV 265 + + LR +ER VG T ACGSAACA+V + V V++LGG L+I W + Sbjct: 186 KKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKLIIIWKGFGTPL 245 Query: 266 FMTGEAKKEWEGKLDI 281 +M G AK ++G + I Sbjct: 246 YMVGPAKHVYDGYIYI 261 >gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] Length = 275 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 134/279 (48%), Gaps = 9/279 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID+ N+ I ++ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGNG RC RF+ + ++ ET G + +DG I+ ++G PI D Sbjct: 61 DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + D D + + + +SMGNPHA+ V D + +++ G L+ Sbjct: 121 TQIPF-QPEDSEDNAEYGLTVAGNTHRIG--ALSMGNPHAVLTV-DSVADAPVSTLGPLI 176 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP F E VN+ + S + LR +ERGVG T ACGS ACA+ V + AV+ Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236 Query: 248 VKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIKTG 284 V + GG L + W DN+ V++ G +EG + ++ G Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275 >gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] Length = 280 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 143/286 (50%), Gaps = 33/286 (11%) Query: 8 FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G+GN + ++ G DN+ A+ D ++ I + A D +RI Sbjct: 3 FTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGMRI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR-MKRKS--FTFETIRGI----LVAKENRDGSISVD 119 N DGSE CGNG+RC+ +++ + + RK+ T ET G+ L ++ S+ VD Sbjct: 61 FNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVLVD 120 Query: 120 MGEPILDW--KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L KL+ R++ + VS+GNPHA+ F + Sbjct: 121 MGRPELSPPVKLMAAGRTWQAVP-------------------VSVGNPHAVVFC-GGVDA 160 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +LA G L +HP F + VN+ A+ L +R WERG G T ACG+ ACA++ A+ Sbjct: 161 LNLAELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAA 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 +R +V + GG L + W +N H++MTG A +EG++ ++ Sbjct: 221 RAGLVSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLE 266 >gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 279 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 128/292 (43%), Gaps = 31/292 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60 + F KM+G N + +D C + + I ALS HF D I+ I Q A Sbjct: 3 LSFTKMQGCANDYIYLD---CRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D +RI N DGSE + CGNG+RCV +L T + +++ +T+ G+ G V+ Sbjct: 60 DGMMRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVE 119 Query: 120 MGE--------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 MG P ++ PL +D +H+ +S+GNPH + V Sbjct: 120 MGAYSAMPASLPAVNMGEEPLVDKELTVDGKTWHV-----------TCISVGNPHCVTVV 168 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 ED + L G H F E +N +V L +R WERG G T ACG+ CA Sbjct: 169 ED-VDSLKLEEIGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCA 227 Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +V A L + V++ GG L I + MTG A+ EG ++ Sbjct: 228 TVAALTELGICPAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279 >gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153] Length = 217 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 110/216 (50%), Gaps = 22/216 (10%) Query: 76 SCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P IP Sbjct: 9 QCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFMPSEIPFV 68 Query: 134 RSFDKMDRDRFH-------IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + D + I PV+ V+MGNPHA+ V DD+ + G+L Sbjct: 69 PESGEGDDACIYGVHLESGIQPVS--------CVNMGNPHAVIVV-DDVECAPVRETGSL 119 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTN 243 + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA G L + Sbjct: 120 IEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDE-G 178 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 179 KTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214 >gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661] gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM 2661] Length = 295 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 124/250 (49%), Gaps = 22/250 (8%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGI 105 D ++ I D RI N DGSE + CGNG+RC +++ R MK+ ET G+ Sbjct: 46 DGVIFIQKPTSDEYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGL 105 Query: 106 LVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--- 158 V++ +G I V MG P K IP+ K D D F G L L+NP+ Sbjct: 106 RVSEMEIEGDEVKKIKVYMGVPKFKLKDIPMVVDGYKED-DEFLNG---ELKLKNPYLPK 161 Query: 159 ----VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 VV++GNPHA+ FVED D L G + H F E +N+ +V + Sbjct: 162 VKLSVVNVGNPHAVIFVEDNNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNE 221 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 + + TWERG G T ACG+ ASV+ + L KTN V + GG L IE D+ V+M G Sbjct: 222 IRIVTWERGAGYTTACGTGTTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIG 280 Query: 270 EAKKEWEGKL 279 +A ++ KL Sbjct: 281 DAVMVYDAKL 290 >gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286] Length = 280 Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 147/284 (51%), Gaps = 23/284 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN I M G I + + A+ N HF D ++LI D Sbjct: 6 FTKMQGAGND--YIYMNGFTQQIDNPSELAVRLS-NRHFGIGSDGLVLI--LPSDICDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG---SIS 117 +++ N DGSE + CGN RCV +++ +K T ET G+ + ++ D ++ Sbjct: 61 MQMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL LIP+ + + + I G + + VSMGNPHA+ F++ + Sbjct: 121 VDMGEPILAPTLIPVRVAEEPVLEYPLDIDGKIWKIS-----CVSMGNPHAVVFMKG-IK 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G +P+F N V +L++R WERG G T ACG+ ACA+ VA+ Sbjct: 175 DLDLPVLGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R +++ +LGG L IEW NNHV+MTGEA +EG+L Sbjct: 235 VLNNHCDRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278 >gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 285 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 22/292 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 ++ F K +G+GN ++ID R +NI ++ + + N + D I+L+ + + Sbjct: 2 QIIKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQN-SE 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114 + ++I N DGS + CGNG+RC++++L + + +F ET+ G L Sbjct: 61 RGANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGD 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFF 170 I V+MG P + K IP S + ++ P + ++N + + MGNPH + Sbjct: 121 HIRVNMGSPSFEPKAIPTTLSPNNLNI------PEGTVTIKNENITMYGIGMGNPHMVII 174 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ + L G F N+ V ++ + ++ WERG G T ACG+ AC Sbjct: 175 LKS-IEDLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGAC 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 A + + L TN V + GG L I+W + ++ ++MTG A+ + G+L I Sbjct: 234 ACLAVTSLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285 >gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] Length = 286 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM GIGN +ID +D A + HF D ++ + A D Sbjct: 8 FSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117 R+ N DGSE + CGNG+RC F+ + +K++ T ET I+ I + EN + + Sbjct: 66 YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG IP+A D D F P+ L N +S+GNPHAI FV D++ Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L + V + + GG L ++ FM G A+ ++G++ Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEI 285 >gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 269 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 135/285 (47%), Gaps = 34/285 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + D + + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYVN---CFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQ 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DG+ CGNG+RCV ++ + + + ET GI + + + +++ Sbjct: 58 MDMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDD 174 VDMG+P+ +L + I ++ F+ +SMGNPHA+ F E+ Sbjct: 118 VDMGKPVQTSELF-----------EELEIKGKSYRFIG----ISMGNPHAVVFEDEFEEP 162 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL G H F + N RV + +R WERG G T ACG+ ACA V Sbjct: 163 IETLDLEKIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAV 222 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 A+ T+ V V++LGG L I W + + V+MTG A + + G+ Sbjct: 223 AAILAGCTDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGE 267 >gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] Length = 286 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM GIGN +ID +D A + HF D ++ + A D Sbjct: 8 FSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117 R+ N DGSE + CGNG+RC F+ + +K++ T ET I+ I + EN + + Sbjct: 66 YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG IP+A D D F P+ L N +S+GNPHAI FV D++ Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239 Query: 237 GCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKL 279 L + V + + GG L + E + FM G A+ ++G++ Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEI 285 >gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] Length = 275 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 139/284 (48%), Gaps = 20/284 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F KM+G+GN +VID H + D AL + H+ DQI+L+ V Sbjct: 1 MLRFTKMQGLGNDFVVID--AIHQTVNLDE-AALRRLADRHYGIGCDQILLVEPPASDEV 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DG EV CGNG RC RF+ + + R ET G +V G + V Sbjct: 58 DFRYRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRV 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177 +MG P +PL DR+R + VN + F VS+GNPHA+ V D+ Sbjct: 118 EMGVPRHAPAEVPLL-----ADRER-SVYTVNVEGVDWQFGAVSVGNPHAVITVA-DVDE 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A G +L +H +F E N+ +V L LR +ERG G T ACGS ACA+ V G Sbjct: 171 APVARVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVV-G 229 Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 L T V + + GG L I W V+++G A +EG++ Sbjct: 230 ILQGTLESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273 >gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 240 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 7/239 (2%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103 FDQ++++ D RI N DGSEV+ CGNG+RC RF+ R + + T +T Sbjct: 3 FDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKA 62 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 GI+ + ++G + V+MG P K +P F + + + + + + VV+MG Sbjct: 63 GIVKPELGQNGWVRVNMGYP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMG 118 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ V D L D+A G + H F E VN +V + + LR +ERGVG T Sbjct: 119 NPHAVTIVPDVLTA-DVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETL 177 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ACG+ ACA+ V+ +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 178 ACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236 >gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8] gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8] Length = 1351 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 150/296 (50%), Gaps = 28/296 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQ 56 + + + F KM G GN + + C D + + AL+ D HF D ++L+ + Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFN---CFDRMIDNPEGFALNLSDR-HFGVGGDGVILV--CR 1121 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD- 113 D +R+ N DGSE + CGNG+RCV +F+ + R T ET+ GI+ K +R Sbjct: 1122 SKVADGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHY 1181 Query: 114 GSI---SVDMGEPILDWKLIPLARSFDKMDR--DR-FHIGPVNHLFLRNPFVVSMGNPHA 167 G + +VDMG IL+ + IP D+ R DR I H VSMGNPH Sbjct: 1182 GEVNGATVDMGAAILEPERIPCTLPADENGRVVDREVEIAGEKHRVT----CVSMGNPHC 1237 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F+ +++ ++ G P+F E VN +V +L +R WERG G T ACG+ Sbjct: 1238 IVFM-NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGT 1296 Query: 228 AACASVVASGC--LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ N V+V + GG L I + ++ V+MTGEA +EG + + Sbjct: 1297 GACAAVVAAVLNGYCPMNEEVTVMLRGGNLTIRYTEDT-VYMTGEAVTVFEGDIRV 1351 >gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] Length = 283 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 38/293 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+ GN + ID H + + A D HF D ++LI D Sbjct: 3 FTKMQAFGNDYVYID--AIHQELKNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKS-FTFETIRGI----LVAKENRDGSIS 117 +R+ N DG+E + CGN +R V +++ R+ K+ ET+ G+ L + +I Sbjct: 58 MRMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIR 117 Query: 118 VDMGEPILDWKLIPLARSFDK--------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D+GEP L K+IP+ D +DR FHI VS GNPH Sbjct: 118 ADIGEPRLSTKVIPINTEMDTFVDQPVQVLDR-TFHIT-----------AVSWGNPHCAM 165 Query: 170 FVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV D + D+ +G + +F N++ S + L +R WERG G T CG+ Sbjct: 166 FV-DSVAELDVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTG 224 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +VV + K +R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 225 CATAVVTAILTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] Length = 285 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 139/285 (48%), Gaps = 11/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +VID N+T L+ DQI+++ A +D Sbjct: 3 IKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R VRF+T + + T+ G++V + DGSI+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDMGA 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P+ +P D + + P+ + + + V+SMGNPHA+ V D + Sbjct: 123 PVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMS--VLSMGNPHAVQIV-DAVETA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LA G + H F VN ++ ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 180 GLALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 + + V V+ GG L I W +HV ++G A +EG++ + Sbjct: 240 RGQLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284 >gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 186 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 11/196 (5%) Query: 87 FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 L + + + T RG+L + D ++SVDMG+P+L+W+ IPL +MD I Sbjct: 1 MLMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLT---GEMDTTALPI 57 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 NP SMGNPH FFVED L D+A+ G ++ +P+F N+ +V Sbjct: 58 S-------GNPTACSMGNPHCTFFVED-LASVDVAAIGPMIEANPLFRNRTNVHFVQVID 109 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 + LR WERG G+ GS C +VV + V V+ GG + ++W VF Sbjct: 110 RGRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVF 169 Query: 267 MTGEAKKEWEGKLDIK 282 +TG K + GK+ I+ Sbjct: 170 LTGSVKTVFSGKIAIQ 185 >gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] Length = 278 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 13/276 (4%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D + + +A DQ++ + + DA +RI Sbjct: 5 FIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMRI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGN MRCV +L R + ET+ GI+ + +I+VDMG P Sbjct: 64 YNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQW 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + IPL + + +D +G ++ +SMGNPH + V D ++LA G Sbjct: 124 AGRAIPLDQDGEMIDAP-LEVGGQSYRMT----ALSMGNPHGVVRVAD-AEGFELAKVGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TN 243 L+ H +F +N + +V S + +R WERG G+T ACG+ ACA+ VA C+ + Sbjct: 178 LVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVA--CMRQGWVE 235 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V + GG L I W +++ V M+G A + + G+L Sbjct: 236 RDCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271 >gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] Length = 290 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 136/284 (47%), Gaps = 22/284 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M G GN +V+D +T + AL+ + HF DQI+L+ D RI Sbjct: 1 MHGAGNDFVVLDGVRQSIELTPERARALA---DRHFGIGADQILLVDAPLHPEADFRYRI 57 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV+ CGNG RC VRF+ + +R E GI+ DG++SV+MG+ Sbjct: 58 FNADGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQ-- 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYH 177 + P A FD D L P +V++ NPHA+ V DD+ Sbjct: 116 --TRFEPQALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLV-DDVQT 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 173 APVGTIGPLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGI 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W DN+ + M+G A + G++DI Sbjct: 233 RRGLLDSPVLVHTRGGPLTITWSDNS-LRMSGPAVTVFAGQVDI 275 >gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] Length = 292 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 38/296 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM+G GN +VID + + I A+ HF D ++L+ + S D Sbjct: 1 MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMC---RPHFGIGADGLILVEPSE--SCD 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG---ILVAKENRD-G 114 + N DGS + CGNG+RC+ ++ K F ET G + V + R Sbjct: 56 VRMNYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVS 115 Query: 115 SISVDMGE--------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 +I V MG P++ K L DR+ + SMGNPH Sbjct: 116 TIRVSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTY------------GCASMGNPH 163 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 VE+ + + + G KHPMF N+S A V S +S+ + TWERGVG T ACG Sbjct: 164 MAVLVEN-VDSFPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACG 222 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + CA+V + V + GG L+IE D + VFMTG AK + G +++ Sbjct: 223 TGTCATVAVLHRMGLVGNKVHACLSGGDLVIEL-DGSAVFMTGPAKVVFRGTYEMQ 277 >gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] Length = 277 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 147/288 (51%), Gaps = 27/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASVDA 62 F K+ GIGN + ID R +DNI ++ A A + D ++++ + A V+ Sbjct: 3 FWKLHGIGNDFVAIDGR--YDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVADVE- 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116 + N DGS CGNG+RC V+F+ +++ F T+ GI K N +DG SI Sbjct: 60 -MVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVED 173 V+MG+ K +P++ +K + + L + V+ MG PH + FV D Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITV-------LDREYTVTSILMGVPHTVIFV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L ++ +G + KH +F + N++ ++ +++ ++T+ERG G T CG+ A V Sbjct: 171 ELSMEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACV 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + S L K ++V+V GG + I+ +N +MTG A K EG L++ Sbjct: 231 MVSNYLGKVGKSVNVISEGGSVRIDL-ENGFAYMTGPAVKICEGNLEV 277 >gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061] gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC 35061] Length = 286 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 22/286 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM GIGN +I+ +D A + HF D ++ + A D Sbjct: 8 FSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117 R+ N DGSE + CGNG+RC F+ + +K++ T ET I+ I + EN + + Sbjct: 66 YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG IP+A D D F P+ L N +S+GNPHAI FV D++ Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239 Query: 237 GCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKL 279 L + V + + GG L + E + FM G A+ ++G++ Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEI 285 >gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4] gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4] Length = 279 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 13/278 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G+GN +V+ R + A D ++ I ++A D +RI Sbjct: 3 FVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSEEA--DITMRIF 60 Query: 68 NCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDMG 121 N DGSE + CGN +RCV + + T + + T GI L K+ + S +VDMG Sbjct: 61 NADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EPIL+ IP+ K+ + + L LR +S GNPH + FV + + Sbjct: 121 EPILERSAIPMQGPPGKVVNEPLIFE--DGLVLRV-TALSFGNPHCVLFV-PAVEEAPVE 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP F N+ V + +R WERGVG T ACGS ACA+ VAS Sbjct: 177 ELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILNGY 236 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T R + V + GG L I W ++ HV++ G A ++G+ Sbjct: 237 TAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGE 274 >gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] Length = 295 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + N F D ++ I D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +++ R MK+ ET G+ V++ +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169 V MG P K IP+ K D D F G L L+NP+ VV++GNPHA+ Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKED-DEFLNG---ELKLKNPYLPKVKLSVVNVGNPHAVI 176 Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FVED D L G + H F E +N+ +V + + + TWERG G T A Sbjct: 177 FVEDNGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ ASV+ + L KT+ V + GG L IE D+ V+M G+A ++ KL Sbjct: 237 CGTGTTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290 >gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] Length = 295 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI D +N + + + D ++ I + D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK-ENRDGS---I 116 RI N DGSE + CGNG+RC +++ R MK+ ET G+ +++ E +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169 V MG P K IP+ K + + F G +N L NP VV++GNPHA+ Sbjct: 121 KVYMGVPKFKLKDIPMILE-GKDNEEEFLNGELN---LNNPILPKVRLSVVNVGNPHAVI 176 Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FVED D +L G + H F E +N+ +V + + + TWERG G T A Sbjct: 177 FVEDNNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTA 236 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ ASVV + L KT+ V + GG L IE D+ V+M G+A ++GKL Sbjct: 237 CGTGTTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290 >gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7] gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7] Length = 1351 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 32/298 (10%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQ 56 + + + F KM G GN + + C D + + AL+ D HF D ++L+ + Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFN---CFDRMIDNPEGFALNLSDR-HFGIGGDGVILV--CR 1121 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD- 113 D +R+ N DGSE + CGNG+RCV +F+ + R T ET+ GI+ K +R Sbjct: 1122 SKVADGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHY 1181 Query: 114 GSI---SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 G + +VDMG ILD IP D+ ++R+ I H N VSMGNPH Sbjct: 1182 GEVNGATVDMGAAILDPVKIPCTLPADENGMVVNRE-VDIAGEKH----NVTCVSMGNPH 1236 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 I F+ +++ ++ G P+F E VN +V +L +R WERG G T ACG Sbjct: 1237 CIVFM-NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACG 1295 Query: 227 SAACASVVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + ACA+VVA +G K + V+V + GG L I + D V+MTGEA +EG + + Sbjct: 1296 TGACAAVVAAVLNGYCPK-DEEVTVMLRGGNLTIRYTDET-VYMTGEAVTVFEGDIRV 1351 >gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] Length = 267 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 39/288 (13%) Query: 8 FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60 F KM+G GN + +D C + I + + A+ D HF D ++LI D D + Sbjct: 3 FVKMQGAGNDYVYVD---CFKEKIKNPSEIAIKVSDR-HFGVGSDGLILICPSDIADVKM 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS-- 115 D + N DGS CGNG RCV ++ +K ++FT ET GI K E +DG Sbjct: 59 DMY----NADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGIKYIKVEPKDGKAE 114 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 I+V+MG+ ++ + ++ I F+ V +GNPHA+++++ Sbjct: 115 YINVNMGKAVITSEF-----------PEKILINGEEKEFIG----VDIGNPHAVYYIDSL 159 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + L + DL G KH FS+ VN + +++ +R WERG G T ACG+ ACAS Sbjct: 160 EKLQNMDLNRVGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACAS 219 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ + +V V +LGG L I +N+ ++M G+A+ + G+++ Sbjct: 220 AFATMKKGACDTSVRVHLLGGDLDISL-ENDEIYMRGKAEYVFTGEIN 266 >gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4] Length = 264 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 36/285 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + D + HF D ++LI + A D Sbjct: 3 FTKMQGIGNDYVYVN---CFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQ 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS CGNG+RCV ++ + + ET GI + K+ + G ++ Sbjct: 58 MDMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVT 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175 VDMG P IG P+ F VSMGNPHA+ F+ D + Sbjct: 118 VDMGRP-----------------EQTSEIGEPITVAGKEYRFTGVSMGNPHAVVFM-DGI 159 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ G H F + N + +++R WERG G T ACG+ ACA+ VA Sbjct: 160 KDMEIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVA 219 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T+ V V +LGG LLI W + + VFMTG A + + G++ Sbjct: 220 CILNGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264 >gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 284 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 28/229 (12%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRD 113 VD +RI N DGSE CGN RCV +++ +R K F T G++ D Sbjct: 76 GVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFNLHTKSGLVRPALLDD 135 Query: 114 GSISVDMGEPILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G + VDMG P R+F K+ D + VSMGNPHA+ F Sbjct: 136 GRVCVDMGLP----------RTFLGSIKLTADCYDF---------TAETVSMGNPHAVIF 176 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD+ L ++G++L F + N+ A+V + + +R WERG G+T ACG+ +C Sbjct: 177 V-DDIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERGCGVTMACGTGSC 235 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A++VA+ + V + GG L I+ ++ V MTG A++ ++G + Sbjct: 236 ATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGTI 284 >gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/292 (30%), Positives = 136/292 (46%), Gaps = 20/292 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G GN + +D C + + AI+ + LI + D Sbjct: 3 IEFTKMHGAGNDYVYVD---CTKEMLPNPGAISEYVSHRRFGIGSDGLICVCKSDVADFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N D SE + CGNG+RCV +F+ + + + T ET+ G+ +V + Sbjct: 60 MRMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAK 119 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDR----DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 VDMG+P+ IP+ + +D+ + H N +SMGNPH + FV Sbjct: 120 VDMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFV- 178 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ +L G H +F EGVN +V ++ R WERG G T ACG+ A A Sbjct: 179 DDVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAV 238 Query: 233 VVASGCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA L+K + ++V GG L + N+HV + G A ++G +DI Sbjct: 239 TVACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDI 290 >gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13] gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13] Length = 272 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 136/282 (48%), Gaps = 18/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-DAF 63 + F KM+ IGN +VI+ +++ I L+ FDQ+++I + + D Sbjct: 3 IPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFDYK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC ++ + T ET+ G + ++ D I+VDMG Sbjct: 63 YRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTKD-DELIAVDMG 121 Query: 122 EPILDWKLIPLARSFDKM-DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + K P + FD D+ I + + +GNPH +FFV D + D Sbjct: 122 TYSIGMKNEP-SLFFDIFSDKKTEEIQGI---------YIDVGNPHIVFFV-DSVKDVDA 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + +F VN+ + + + L +ERG GLT CGS ACA+ +A+ L Sbjct: 171 VRTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHLK 230 Query: 241 KTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + V V M GG + + +NH+ + G+A +EG +++ Sbjct: 231 KVEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272 >gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] Length = 269 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 12/276 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + ++ D I L+ FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF L + T G LV + + ++V+MG P + Sbjct: 61 DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFE- 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 P + F ++ ++ P + L VSMGNPH + VED + + S G L Sbjct: 120 ---PASLPFRANKVEKTYLLPTDVQTVLAG--AVSMGNPHCVIRVED-IDSAPVESVGPL 173 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +H F +GVN+ +V + + LR +ERG G T ACG+ ACA+ V V Sbjct: 174 LERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRV 233 Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + GG L I W + V+MTG A ++G++++ Sbjct: 234 RVDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269 >gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] Length = 309 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 131/283 (46%), Gaps = 20/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV------ 60 KM G GN +VID ++ L+ DQI+++ V Sbjct: 5 LTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAAAGPE 64 Query: 61 --DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 D RIIN DG EV+ CGNG RC VRF+ + R T GI+ + DG + Sbjct: 65 GLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLPDGGV 124 Query: 117 SVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNPHAIF 169 V+MGEP D +P + R + + + P+ +F R +VSMGNPHA+ Sbjct: 125 EVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNPHAVQ 184 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 VED + + + G L+ HP F VN +V S + LR +ERG G T ACG+ A Sbjct: 185 VVED-VKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLACGTGA 243 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA 271 CA+ VA + V V+ LGG L I W + VF+ G A Sbjct: 244 CAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPA 286 >gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] Length = 297 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 95/295 (32%), Positives = 139/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + + + A + D ++ + D Sbjct: 3 MEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDEYD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +++ R MK+ ET G+ V++ +G I Sbjct: 63 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVKKI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169 V MG P K IP+ D D F G L L+NP+ VV++GNPHA+ Sbjct: 123 KVYMGVPKFKLKDIPMVVDGYSED-DEFLNG---ELELKNPYLPKVKLSVVNVGNPHAVI 178 Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FVED D L G + H F E +N+ +V + + + TWERG G T A Sbjct: 179 FVEDNGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTA 238 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ ASV+ + L KT V + GG L IE D+ V+M G+A ++ KL Sbjct: 239 CGTGTTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292 >gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] Length = 274 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 26/279 (9%) Query: 6 VDFAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 ++F KM+G+GN I++ID ++ + N F D +++I A Sbjct: 1 MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKIC---NRRFGIGADGLVIIRKSNIA-- 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRD 113 DA + IIN DGS CGN +RC ++L +++ + ET GI + +N+ Sbjct: 56 DAKMVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKV 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S+ V+MG+ D K IPL + + + I + + MG PH I + Sbjct: 116 ESVKVNMGKGSFDGKDIPLNNK-NSLINEVIKIKEKEYKLT----ALLMGVPHTILINNN 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D YD+ G + K+ +F EG N++ +V + +++++TWERG G T ACG+ CASV Sbjct: 171 D--EYDVIE-GKDIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASV 227 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 VA L + V+V+ LGG L +E NN V+M G A+ Sbjct: 228 VALKKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAE 265 >gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6] Length = 279 Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 132/300 (44%), Gaps = 47/300 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60 + F KM+G N + +D C ++ + I ALS D HF D I+ I A Sbjct: 3 LSFTKMQGCANDYIYLD---CRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGI-LVAKENRD----- 113 D +RI N DGSE Q CGNG+RCV +L T +++ +T G + ++ R Sbjct: 60 DGRMRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVE 119 Query: 114 -GSIS--------VDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G S V+MGE P++D L R++ +S+G Sbjct: 120 MGGYSAMAAALPAVNMGEGPLVDCPLTVEGRTWRVA-------------------CISVG 160 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPH + V DD+ L G KHP F E +N +V L +R WERG G T Sbjct: 161 NPHCVTVV-DDVDSLKLEDIGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETW 219 Query: 224 ACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACG+ CA+V A L V V++ GG L+I + MTG A EG ++ Sbjct: 220 ACGTGTCATVAALTELGVCPAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279 >gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B'] Length = 279 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 137/287 (47%), Gaps = 27/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM GIGN + + C + + + HF D I+LI + A DA Sbjct: 3 FWKMHGIGNDYIYFN---CFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +RCV ++L ++ + ET+ GI L + + Sbjct: 58 MRMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVE 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG PIL+ IP+ D + I V + N VSMGNPH + DD+ Sbjct: 118 VDMGAPILEPAKIPVDLEGDVIINHELXIEEVAY----NITCVSMGNPHCVV-FVDDVDD 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L + +F + VN + + + +R WERG G T ACG+ ACA VA Sbjct: 173 IELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACA--VAVA 230 Query: 238 CL----HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 C+ K N +++ + GG L I + D +FMTG A K + G ++ Sbjct: 231 CVLNGYAKKNEDITIILKGGELKIRYTDET-IFMTGTATKAFSGDVE 276 >gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] Length = 293 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 138/294 (46%), Gaps = 28/294 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M G GN + +D C +A + HF D ++LI A D F+ + Sbjct: 1 MHGAGNDYVYVD---CTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEM 55 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG------SISV 118 N DGS Q CGNG+RCV +++ +K +T+ GI + N D S+ V Sbjct: 56 YNSDGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRV 115 Query: 119 DMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL---RNPFV--VSMGNPHAIFF 170 +MG PIL IP+ + + + +D V+ R+ V VSMGNPH + F Sbjct: 116 NMGSPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVF 175 Query: 171 VEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 ++DD ++ + G L H +F E N +V +L +R WERG G T ACG+ Sbjct: 176 MDDDFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTG 235 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 CAS+VA+ + +LGG L I W+ N V+M G A ++G +DI Sbjct: 236 CCASLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDI 289 >gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] Length = 268 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/279 (30%), Positives = 140/279 (50%), Gaps = 19/279 (6%) Query: 11 MEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M+G GN +VID R G + S+ A D I+LI + + D + IIN Sbjct: 1 MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122 DGS CGNG+RC R++ + + + ET GI +A +N I+++MGE Sbjct: 59 ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L+ + IP A +K+ + +I ++ + +G PH + + D D+ Sbjct: 119 FSLNPEDIP-ANCKEKIMNKKIYINDKEYIINS----MKLGVPHTVVMCKTD--DIDIEE 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + K+ +F+EG N++ + +++ ++TWERG G T ACG+ +CAS S L Sbjct: 172 -GKYIEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYV 230 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG L+ E+ D N VFMTG A+ ++G+ ++ Sbjct: 231 GNKAKVFVPGGELITEFKD-NKVFMTGPAEIVFKGEFNL 268 >gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] Length = 293 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 116/254 (45%), Gaps = 39/254 (15%) Query: 61 DAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRD 113 D + I N DGS+ ++ CGNG+RC+ RF+ R +S+ T G ++ D Sbjct: 42 DYTMHIYNPDGSQPEANMCGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKED 101 Query: 114 GSISVDMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G + VDMG PIL+ IP L FD + + + L VSMGNPH + F Sbjct: 102 GQVLVDMGIPILNGNRIPTLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTF 157 Query: 171 VED------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG---- 220 E+ DL L G L H F + N V SL L +R WERG G Sbjct: 158 GEEHEEHLFDLSTLPLEKIGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLE 217 Query: 221 --------------LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHV 265 +T ACG+ ACA+ VA+ + + V + GG L +EW ++HV Sbjct: 218 IEALSKELVFFFAGITLACGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHV 277 Query: 266 FMTGEAKKEWEGKL 279 +M+G A+ + G L Sbjct: 278 YMSGPAEHVFTGTL 291 >gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] Length = 293 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 116/254 (45%), Gaps = 39/254 (15%) Query: 61 DAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRD 113 D + I N DGS+ ++ CGNG+RC+ RF+ R +S+ T G ++ D Sbjct: 42 DYTMHIYNPDGSQPEANMCGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKED 101 Query: 114 GSISVDMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G + VDMG PIL+ IP L FD + + + L VSMGNPH + F Sbjct: 102 GQVLVDMGIPILNGNRIPTLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTF 157 Query: 171 VED------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG---- 220 E+ DL L G L H F + N V SL L +R WERG G Sbjct: 158 GEEHEEHLFDLSTLPLEKIGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLE 217 Query: 221 --------------LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHV 265 +T ACG+ ACA+ VA+ + + V + GG L +EW ++HV Sbjct: 218 IEALSKELVFFFAGITLACGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHV 277 Query: 266 FMTGEAKKEWEGKL 279 +M+G A+ + G L Sbjct: 278 YMSGPAEHVFTGTL 291 >gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] Length = 283 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 23/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF----DQIMLIHDFQDASV 60 + F KM G GN ++I D N L+ + + HF D +M++ + + Sbjct: 3 IKFKKMHGTGNDFIMIYYE---DYPFEQHFNQLAKEVCHRHFGIGADGLMIVKE--SSVA 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D ++ N DGSE CGNG+RC +F+ +K++ FT ET+ G+ + E + Sbjct: 58 DVQMKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVS 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 S+ V+MG+ +LD K IP+ + ++ I + V +G PH I F+E Sbjct: 118 SVRVNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI----STVLLGVPHTIIFMETL 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + G ++ H +F E N++ A++ + ++ +RTWERG G T ACG+ + Sbjct: 174 DLDR--VKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVC 231 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + L V V++ GG L IE ++M G AK +G Sbjct: 232 GIANHLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKG 275 >gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] Length = 268 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 28/284 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM+G GN + ++ + +A+ + +T L+ + D +R Sbjct: 3 IEFTKMQGAGNDYIYVNTLK-YPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETGDFSMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISV 118 I N DGSE CGN RCV +++ +K ET+ GI + EN D S++V Sbjct: 62 IFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVD-SVTV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P D + + L + R V+MGNPH + F D + Sbjct: 121 DMGAP-CDIRTVDLGNGY----------------LFREGTAVNMGNPHLVIFTHD-VSAI 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL S G + HP+F VN+ A+V ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 163 DLLSEGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAAAF 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + M GG L IE+ N+ + MTG A K ++G +++ Sbjct: 223 TGRGKGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTINM 266 >gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/288 (32%), Positives = 135/288 (46%), Gaps = 35/288 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + +D C + + HF D ++LI D Sbjct: 5 FTKMQGIGNDYVYVD---CFKEQVKEPGKVSRFISDRHFGIGADGLILI--CPSGKADCR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115 + + N DGS+ CGNG+RCV ++ R++ T ET+ GI L K+ + S Sbjct: 60 MEMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVS 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMGE L L P D D RF +G + +GNPHA++++ D + Sbjct: 120 ITVDMGEGTLTSDL-PEDIQVDGKDY-RF-VG------------IDVGNPHAVYYM-DGI 163 Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL G H F+ + VN V + L++R WERG G T ACG+ A ASV+ Sbjct: 164 DRLDLEKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVL 223 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 AS + + V + GG L+I +FMTG A + + G +DI Sbjct: 224 ASILMGYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDI 271 >gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 216 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 102/216 (47%), Gaps = 9/216 (4%) Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 3 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 62 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P +K ++ + VVSMGNPH + V D++ + + Sbjct: 63 PNFEPAQVPF--RANKAEKTYIMRAAEQTILC---GVVSMGNPHCVIQV-DNVDTAAVET 116 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 117 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 176 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V++ GG L I W H ++MTG A ++G Sbjct: 177 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 212 >gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] Length = 273 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 19/282 (6%) Query: 8 FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM+G GN +VID R G + S+ + D I+L+ + + D + Sbjct: 3 FTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIKME 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDGSISVD 119 IIN DGS CGNG+RC R++ + + + ET GI +A +N I+++ Sbjct: 61 IINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGITIN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGE L+ + IP A +K+ + +I N ++ N + +G PH + + + D Sbjct: 121 MGEFSLNPEDIP-ANCKEKIMNKKIYIN--NKEYIINS--MKLGVPHTVVMCK--INDID 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K+ +F EG N++ V +++ ++TWERG G T ACG+ +CAS S L Sbjct: 174 IQE-GKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISNIL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V + GG L+ E D N VFMTG A+ + G++++ Sbjct: 233 GYVGDKVKVLVPGGELITELKD-NKVFMTGPAEIVFTGEINL 273 >gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105] gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105] Length = 291 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 144/294 (48%), Gaps = 25/294 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58 S+++ F KM G GN +V+D +++ I L+ + HF DQ++++ + A Sbjct: 4 SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLA---DRHFGVGADQVLVVESSELA 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 D RI N DG EVQ CGNG RC +++ + + T ET+ GI+ + + + Sbjct: 61 --DFKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWV 118 Query: 117 SVDMGEPILDWKLIPL------ARSFDKMDRDRFHI--GP-VNHLFLRNPFVVSMGNPHA 167 V+MG L+ + +P +R + + R + GP + L++ V SMGNPH Sbjct: 119 KVNMGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVG---VASMGNPHV 175 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + ++ + + G L HP F E VN+ + + LR +ERGVG T ACG+ Sbjct: 176 VILLDQPASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGT 235 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279 ACA+ V + V V GG L IEW ++ V MTG A+ +EG+ Sbjct: 236 GACAAAVVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEF 289 >gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] Length = 277 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 31/290 (10%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ GIGN + ID R +S A+ + + D ++++ + A ++ + Sbjct: 3 FWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVADIE--M 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117 N DGS CGNG+RC RF+ + + F +T+ GI N +I Sbjct: 61 VYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVINIK 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVEDD 174 VDMGE IP+A +K ++ HI L F ++ MG PH I FV++ Sbjct: 121 VDMGEGSFKTSDIPMATDKEKFIEEKVHI-------LDRDFTMTSMLMGVPHTIVFVDE- 172 Query: 175 LYHYDLA---SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +DL +G + +F E N++ +V ++++ TWERG G T CG+ A Sbjct: 173 ---FDLEMIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTA 229 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V L KT ++++V GG + I+ D VFMTG A K EG L++ Sbjct: 230 AAVVCNYLEKTEKSMNVTSKGGTVKIDIGD--KVFMTGPAVKICEGYLEV 277 >gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 136/286 (47%), Gaps = 32/286 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 ++F KM G GN + ++ + + + + +T D ++LI + D Sbjct: 3 IEFTKMHGAGNDYIYVNTL-KYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DFS 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSI 116 +RI N DGSE CGN RCV ++L +K ET+ GI + EN D S+ Sbjct: 60 MRIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVD-SV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P RD + N R V+MGNPH + F D + Sbjct: 119 TVDMGAP-----------------RDIRTVDLGNGYLFREGTTVNMGNPHLVIFTHD-VS 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL S G + HP+F VN+ A++ ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 161 AIDLLSEGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAA 220 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + M GG L IE+ N+ + MTG A K ++G +++ Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTINM 266 >gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] Length = 283 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 30/290 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + S + HF D ++++ + + Sbjct: 1 MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIIL---KYVAS 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114 F+ N DGS+ CGNG+RC +L + ++ F +T+ G L K N D Sbjct: 58 MPFMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117 Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIF 169 S V+MG+P+ + K + + ++ R++ +I ++++F MG H++ Sbjct: 118 FSARVNMGKPVFNVKEL-INTEKEQFLREKINIDGKEIEISYIF--------MGTDHSVI 168 Query: 170 FVEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV +D Y++ FG + + +F + VN++ +V + E +++ TWERG G T ACG+ Sbjct: 169 FV-NDFNDYNIDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTG 227 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 A AS V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 228 ATASAVLAKTFGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 225 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 15/222 (6%) Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRD-GSISVD 119 I+N DGS CGNG+RC +++ +K +S T ET G+ ++ EN ++++ Sbjct: 13 IMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVTIN 72 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + + IP AR +++ R + + N + MG PH I F L Y+ Sbjct: 73 MGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLEDYN 125 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K F +G N++ V S + ++TWERG G T ACG+ +CASV+A+ L Sbjct: 126 VEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAANKL 184 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 185 SLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225 >gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] Length = 326 Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 26/245 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQDA 58 VD K+ G N+ ++D +T D + +L+ TD N D ++LI Sbjct: 3 VDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTNHK 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+IN DGSE CGNG+R V R+L+ + K+ F ET+ L K+ + Sbjct: 63 ETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKK------AE 116 Query: 119 DMGEPILDWK--LIPLARSFDKM----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 ++G+ I ++ + P++ + + + + ++F ++ L F V++ NPH I FV Sbjct: 117 ELGKDIQTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRFSAVAVPNPHLISFV 176 Query: 172 E-DDLYHY---DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + LY DLA++ N K+P F +GVN+S V +SL +RT+ERGVG T ACG+ Sbjct: 177 DHETLYSSQFEDLATYLN--GKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGT 234 Query: 228 AACAS 232 A AS Sbjct: 235 AMAAS 239 >gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3] Length = 279 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/290 (30%), Positives = 126/290 (43%), Gaps = 27/290 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60 + F KM+G N + +D C + + I ALS HF D I+ I A Sbjct: 3 LSFTKMQGCANDYIYLD---CRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA +RI N DGSE + CGNG+RCV +L T M + +T+ G+ +G V+ Sbjct: 60 DAMMRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVE 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVED 173 MG +A + ++ GP+ L L +S+GNPH + V Sbjct: 120 MG------AYTAMAAALPAVNMGE---GPLVDLPLEVEENLWRVTCISVGNPHCVTIV-P 169 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ L G H F E +N +V L +R WERG G T ACG+ CA+V Sbjct: 170 EVDSLKLEQIGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATV 229 Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A L V V++ GG L I + MTG A+ EG ++ Sbjct: 230 AALTELGICPAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279 >gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580] gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] Length = 285 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 19/286 (6%) Query: 8 FAKMEGIGNKILVIDMRGCH--DNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++ H + + SD A+ S D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPVK--M 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118 RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ E + S +V Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSATV 123 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L +P+ + ++ G VSMGNPH +F++ DD+ Sbjct: 124 DMGEPRLLKSDMPMRGEQGSETINEKMIFGGRE----MKGTAVSMGNPHIVFYL-DDIEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 L + G L+ K F EGVN+ V + L R WERG G+T ACG+ ACA+ V+S Sbjct: 179 APLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSSV 238 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + ++V + GG L+I W ++ V MTG A+ EG+ I Sbjct: 239 LNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFI 284 >gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] Length = 280 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 39/293 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---------- 55 ++F KM G GN +V+D H+ + + + F + + F Sbjct: 5 LEFTKMHGNGNDFVVVDE--FHEEVVPE-------EHKPQFVRAVCKPRFGVGADGAIFV 55 Query: 56 QDASV-DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN-R 112 Q +SV DA R N DGSE CGNG+RC R++ + F ET+ GI + + + Sbjct: 56 QPSSVADAKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVK 115 Query: 113 DGS--ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHA 167 DG + VDMG+P+ + IP A +FD + D F LF R + + V+ G PHA Sbjct: 116 DGEYWVRVDMGKPVFEPAKIPAAGGTFDGVWHDTF------ELFGRKVDVYAVNTGVPHA 169 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACG 226 + FV D +D+ + + F EG N++ AR+ S +++RT+ERGV T +CG Sbjct: 170 VVFV--DSLDFDILE-ARKIRYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCG 226 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + A V + L VK GG L IE D FMTG+A + ++G L Sbjct: 227 TGSVAVVAVASKLGLIEPEAIVKTKGGVLRIEVRDT--AFMTGKATRVFDGVL 277 >gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1] Length = 1222 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 92/296 (31%), Positives = 132/296 (44%), Gaps = 44/296 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59 M ++ + FAKM G+GN +V+D ++ L + +L+ + AS Sbjct: 948 MAATTIRFAKMHGLGNDFVVVDS-------VRQSLPPLGS-------SWLLVIEPPPASG 993 Query: 60 ----VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENR 112 +D RI N DGSEV CGNG RC+ ++ ++ T L Sbjct: 994 PELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTP 1053 Query: 113 DGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV-----VSMGN 164 DG+I+V+MG P D +PL AR+ V HL L + VSMGN Sbjct: 1054 DGAITVNMGCPKFDPAQVPLLAPARA------------DVYHLALESGATICCGAVSMGN 1101 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH + V DD+ + G L H E N+ ++ S+ LR +ERG G T A Sbjct: 1102 PHLVTLV-DDVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRA 1160 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CGS ACA+V + V+V + GG L I W + ++MTG A +EG L Sbjct: 1161 CGSGACAAVAVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEGLL 1216 >gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07] gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07] Length = 285 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 28/291 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDAS 59 ++ F K+ GIGN + ID R D I AL+ + D ++++ D + A Sbjct: 9 LMKFWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVAD 66 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD- 113 V+ N DGS CGNG+RC +F+ +K++SFT +T+ GI K NR+ Sbjct: 67 VEMVYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREI 124 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFF 170 SI V+MG+ K +P+ + ++ ++ + L + F V+ MG PH + Sbjct: 125 NSIRVNMGKGSFIAKDVPVLTNKERFVQESIKV-------LDSEFKVTSMLMGVPHTVVI 177 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D+L D+ +G + + +F E N++ +V ++ + TWERG G T CG+ Sbjct: 178 V-DELDVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMT 236 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS + L+ +V+V GG + I+ D +MTG A K EG L++ Sbjct: 237 ASAIVCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 285 >gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] Length = 278 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 25/276 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62 F KM G GN +V++ + + D ++AL+ D DQ +++ + A + Sbjct: 6 FTKMHGCGNDFIVVNT--FRETVPED-LSALAQDMCQRRFAVGADQFIILGSAESADANF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 + I+N DGS+V+ CGN +RC + ++ ET+ GI A DG++ + + Sbjct: 63 RMDILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAV 122 Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P I+D L F + P+ VS+GNPHA+ +V D++ Sbjct: 123 AVPSTTIVDVGLDSEHPLFGTPLSAEQYTFPMT--------AVSVGNPHAVTYV-DEIDL 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L H +F N+ +V +++R WERG G T ACGS ACA VAS Sbjct: 174 LNLEKIGPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVAS- 232 Query: 238 CLHKTNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEA 271 LH ++ + V + GG L IEW V+M+G A Sbjct: 233 VLHGVAKSPMKVSLKGGDLEIEWEGRGKPVYMSGSA 268 >gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63] Length = 276 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 28/288 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62 F K+ GIGN + ID R D I AL+ + D ++++ D + A V+ Sbjct: 3 FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVE- 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K NR+ SI Sbjct: 60 -MVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVED 173 V+MG+ K +P+ + ++ ++ + L + F V+ MG PH + V D Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKV-------LDSEFKVTSMLMGVPHTVVIV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS Sbjct: 171 ELDVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASA 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L+ +V+V GG + I+ D +MTG A K EG L++ Sbjct: 231 IVCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 276 >gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] Length = 289 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 34/295 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63 F KMEG+GN + ++ C + D + H D ++LI A D Sbjct: 3 FTKMEGLGNDYVYVN---CFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFS 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + + + ET+ GI ++ + R ++ Sbjct: 58 MAVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVT 117 Query: 118 VDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P + + + + +KM +R + F+R VSMGNPHA+ +++ Sbjct: 118 VDMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIR----VSMGNPHAVVWLDG--- 170 Query: 177 HYDLA---------SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+A S G L+ KH F G N+ RV + + +R WERG G T ACG+ Sbjct: 171 -LDVACVTDGEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGT 229 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 ACA+ A + TN V+V++ GG L IE+ N MTG A+K ++G++DI Sbjct: 230 GACAAAAACMAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDI 284 >gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10] Length = 340 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 27/282 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 7 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVNDPVR 66 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 67 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 126 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ A FD + DR G L+ F +++ NPH I FV Sbjct: 127 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLISFV 182 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 183 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 242 Query: 230 CASVVASGCLHKTNRA-----VSVKMLGGGL--LIEWHDNNH 264 A+ +A CL K A ++V GG + ++ + +NN+ Sbjct: 243 SATSLAF-CLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNY 283 >gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 273 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 25/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G GN + I+ C D N N HF D ++++ +++S Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS-- 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 A + IIN DGS CGN +RC +++ + + F ET GI L+ K+ Sbjct: 56 AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEY 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG+P + IPL + D++ IG + N + MG PH I F + Sbjct: 116 VKVYMGKPSFNGSDIPL-NNLDELIDQEIAIGKEKY----NMTSLLMGVPHTIIFEKHKE 170 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y G + K +F +G N+ +V + + TWERG G T ACG+ CASVV Sbjct: 171 YE---VQEGENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVV 227 Query: 236 SGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + L + + + VK GG L++E ++ V+M+G A+ Sbjct: 228 AKKLGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAE 264 >gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] Length = 336 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 23/268 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G NK ++D +T + AL+ T+ T D ++++++ Sbjct: 1 MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENR--DG 114 V A +R+IN DGSE CGNG+R V R++ + + SF ET++ L VAK + DG Sbjct: 61 PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIETMKADLKVAKHDEFADG 120 Query: 115 --SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + + ++ + D +P FD + +R V L + F +++ NPH I F+ Sbjct: 121 VPAYAAEISPVLFDKHDLP----FDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E + L G L K+P +S+GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 A+ +A H ++ ++V GG Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGG 264 >gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] Length = 279 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 125/286 (43%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM+G N + +D R + +D HF D I+ I D Sbjct: 3 LSFTKMQGCANDYIYLDCRA--SGVPADIAALAQRLSARHFSVGADGIICICAPVTPGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSI--SV 118 +RI N DGSE Q CGNG+RCV +L T +++ +T G V + R G+ V Sbjct: 61 GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSG--VKRITRQGAQLWQV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +MG + +P M D P+ + +S+GNPH + VED + Sbjct: 119 EMG----TYSTLPADLPAIHMGEDPLVDQPLTVEGKVWKVTCISVGNPHCVTVVED-VDS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G H F E +N +V L +R WERG G T ACG+ CA+V A Sbjct: 174 LKLEAIGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALT 233 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L + + V++ GG L+I + MTG A +EG ++ Sbjct: 234 ELGICPAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279 >gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 328 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 23/281 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + + F ET+ L ++ D + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETMYADLAVRQADDFAEG 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ + FD + +R V L F +++ NPH I F+ Sbjct: 121 V----PAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 AS +A H + +SV GG + H +H + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277 >gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] Length = 271 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 31/290 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 V F KM+G GN + ++ + + ++ + +T D ++LI ++ D Sbjct: 3 VKFTKMQGAGNDYIYVNTF-LYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DFS 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGSI 116 +RI N DGSE CGN RC+ +++ ++ ET GI V E S+ Sbjct: 60 MRIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVESV 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P + P+ D + + G VSMGNPH + FV D + Sbjct: 120 TVDMGIPT---GITPV----DLGEGYGYSQG----------IAVSMGNPHLVIFV-DQVS 161 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L+ G LL HP+F + VN+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 162 DVRLSEVGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVAA 221 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 + R V M GG L ++W++ + H+ M G A K ++G+++ + K Sbjct: 222 AFTGRCGRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIEYEPSK 271 >gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] Length = 273 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 25/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G GN + I+ C D N + HF D ++++ + +S Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS-- 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 A + IIN DGS CGN +RC +++ + + F+ ET GI L+ K+ Sbjct: 56 AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEY 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG+P + IPL + D++ IG + N + MG PH I F ++ Sbjct: 116 VKVYMGKPSFNGSDIPL-NNLDELIDQEVAIGKEKY----NMTSLLMGVPHTIIF--ENH 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y++ G + K +F +G N+ +V + + + TWERG G T ACG+ CASVV Sbjct: 169 KEYEVQE-GENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVV 227 Query: 236 SGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + L + + + VK GG L++E ++ V+M+G A+ Sbjct: 228 AKKLGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAE 264 >gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] Length = 270 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 142/273 (52%), Gaps = 12/273 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIIN 68 KM+G+GN L+ID R +++ + I LS + FDQ++ + + A DA I+ N Sbjct: 7 KMDGLGNDFLIIDNRNQKISLSPEQILKLSNRERGIGFDQLIYMENSTQA--DAEIKYFN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG +CGNG RC+ L + + TF+ + + +N D I+V M +P + Sbjct: 65 SDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIMPKPKIKLS 124 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IP+ + + + F I +N L+ ++++GNPH +FF + + +L G ++ Sbjct: 125 EIPVT---NDVQNNPFLI-EINSKKLKG-HLINVGNPHIVFF--EKISDEELKKIGPIIE 177 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 F + +N++ A + + +++D+ WERG G T ACG+AACA+ + L T V++ Sbjct: 178 NLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLKLTKNPVNI 237 Query: 249 KMLGGGLLIEWHDNNHVFMTGEA--KKEWEGKL 279 G LLI+ + + + MTG KKE E L Sbjct: 238 HFQKGHLLIKINSDKTMMMTGPVSEKKEIEVNL 270 >gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] Length = 285 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K G+GN ++ D + N D + F D I+++ + Sbjct: 4 LKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEV--- 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSI- 116 F+ N DGS+ CGNG+RC +L S + FT +TI G IL + G+ Sbjct: 61 PFMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTFF 120 Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 V+MG+P+ + + D+D F ++ + F+ MG H++ F D Sbjct: 121 ARVNMGKPVFN------VKELINTDKDNFINEKITIDGEEIEISFIF-MGTDHSMIF-SD 172 Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DL D+ G + +F + VN + + ++ + TWERG GLT ACG+ A AS Sbjct: 173 DLSKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATAS 232 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 V + L KT+ V+V++ GG L+IE+ ++ FMTG ++K EG Sbjct: 233 AVLTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEG 278 >gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. B100] gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris] Length = 284 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 136/285 (47%), Gaps = 15/285 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 + + + F KM G GN +V+D+R + DA A D HF DQI+ I + Sbjct: 5 VHTGRLRFTKMHGAGNDFVVLDLR--NGTPPPDASLAARLADR-HFGVGCDQILTIETPR 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DG 114 A A RI N DGS Q CGNG RCV +L + F + R G Sbjct: 62 SAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAG 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + SV MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V Sbjct: 122 TYSVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL ++ F E VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 177 VDAAPVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAV 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 237 VLMHRGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGE 281 >gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] Length = 273 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM G GN + I+ C D N + HF D ++++ +++S Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCDRHFGIGADGLVIVRKSENSS-- 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 A + IIN DGS CGN +RC +++ + + F ET GI L+ ++++ Sbjct: 56 AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEY 115 Query: 116 ISVDMGEPIL---DWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 I V MG+P D L L DK +D++++++ + MG PH I Sbjct: 116 IKVYMGKPSFNGRDISLNNLEELIDKEVVIDKEKYNMTSL-----------LMGVPHTII 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 F D Y G + K +F EG N+ +V + + TWERG G T ACG+ Sbjct: 165 FERDKEYE---VQEGEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGC 221 Query: 230 CASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 CASVV + L N + VK GG L+IE ++ V+M+G A+ Sbjct: 222 CASVVVAKKLGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAE 264 >gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] Length = 283 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 32/291 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F K +G GN +++ R + + S + HF D ++++ + + Sbjct: 1 MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIIL---KYVAS 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114 F+ N DGS+ CGNG+RC +L + ++ F +T+ G L+ + N D Sbjct: 58 MPFMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117 Query: 115 -SISVDMGEPILDWK-LIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAI 168 S V+MG+P+ + K LI + ++ R++ ++ ++++F MG H++ Sbjct: 118 FSARVNMGKPVFNVKDLINTEK--EQFLREKINVDGTEIEISYIF--------MGTDHSV 167 Query: 169 FFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 FV +D Y++ FG + + +F + VN++ +V + +++ TWERG G T ACG+ Sbjct: 168 IFV-NDFNDYNIDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGT 226 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 AS V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 227 GVTASAVLAKTFGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26] gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932] gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55] gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34] gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79] gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291] gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58] gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291] Length = 276 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 26/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62 F K+ GIGN + ID R D I AL+ + D ++++ D + A V+ Sbjct: 3 FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVEM 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116 N DGS CGNG+RC +F+ +K++SFT +T+ GI K NR+ SI Sbjct: 61 VYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDD 174 V+MG+ K +P+ +++RF + + R V SM G PH + V D+ Sbjct: 119 RVNMGKGSFIAKDVPVL-----TNKERF-VQESIKVLDRELKVTSMLMGVPHTVVIV-DE 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 172 LDVDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAI 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ D +MTG A K EG L++ Sbjct: 232 VCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGVLEV 276 >gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630] gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42] gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255] gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile] Length = 276 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 26/287 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62 F K+ GIGN + ID R D I AL+ + D ++++ D + A V+ Sbjct: 3 FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVEM 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116 N DGS CGNG+RC +F+ +K++SFT +T+ GI K NR+ SI Sbjct: 61 VYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDD 174 V+MG+ K +P+ +++RF + + R V SM G PH + V D+ Sbjct: 119 RVNMGKGSFIAKDVPVL-----TNKERF-VQESIKVLDRELKVTSMLMGVPHTVVIV-DE 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 172 LDVDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAI 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ D +MTG A K EG L++ Sbjct: 232 VCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 276 >gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum] Length = 290 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 27/284 (9%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64 DF K G+GN +V M +T + I L D N D I+L+ AS + Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIR-LVCDRNFGVGSDGILLL---TRASEPFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL------TSRMKRKSFTFETIRGILVAK-----ENRD 113 RI N DGSE + GNG+R +FL T+R+ F +T+ G++ A+ NR Sbjct: 60 RIFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRL----FRIQTLGGMVTAEVYPDASNRV 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VDMG+ +D + LA + + + P L L+ +S+GNPH +FF E+ Sbjct: 116 DRVKVDMGKATVDPVSVGLANREKPLVEELLELAP--DLRLKG-TAISVGNPHFVFFREE 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ Sbjct: 173 -LDEKFMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAA 231 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 S L K V V+M GG L IE + M G + G Sbjct: 232 TVSVMLGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSG 275 >gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] Length = 283 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 124/284 (43%), Gaps = 16/284 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN +V+D N T I AL+ DQ++L+ + RI N Sbjct: 1 MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 G EV+ CGNG RC+ RF FET++G + + DG + VDMG P L Sbjct: 61 TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120 Query: 128 KLIPLARSFD-KMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDLYHYD 179 +P A D +M + H V +F P V MGNPHA FV D + + Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFC-PPLSCDIEFTAVGMGNPHATIFV-DGVDSFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + L +F E VN+ + +R +ERG G T ACG+ A+ +ASGCL Sbjct: 179 VEPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAA-MASGCL 237 Query: 240 HK-TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V GG + W +++ G A+ + G + + Sbjct: 238 RGFFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISL 281 >gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1] gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1] Length = 331 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 35/254 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 V K G GN L+ID +T D A++ D D ++ + + Q A Sbjct: 3 VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFVSESQQA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA +R+ N DGSE CGNG+RCV R+++ + + ET++ L A++ Sbjct: 61 DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARK---------- 110 Query: 121 GEPILDWKLIPLAR------SFD------KMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167 EP+LD IP R SFD +D++ PV L F V++ NPH Sbjct: 111 AEPLLDG--IPTFRVEISPVSFDLNKLPMHIDKEVLINEPVKALSEDLSFTAVAVPNPHL 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 I FVE++ + D + P +F +GVN+S A+ L +RT+ERGVG T AC Sbjct: 169 IAFVENEGFRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNAC 228 Query: 226 GSAACASVVASGCL 239 G+A AS + + CL Sbjct: 229 GTAMSASSLVA-CL 241 >gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 328 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ + FD + +R V L F +++ NPH I F+ Sbjct: 121 V----PAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 AS +A H + +SV GG + H +H + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277 >gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] Length = 276 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 135/291 (46%), Gaps = 40/291 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN + +D C + HF D ++LI + DA+ Sbjct: 3 FTKMQGCGNDYIYVD---CFSERVERPEELAREISDRHFGVGGDGLILIE--RSGRADAY 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115 + + N DGSE CGNG+RC ++L +R+ +T GI L+ ++ + Sbjct: 58 MHMFNQDGSEGNMCGNGIRCTAKYLYEHGLIPKERREVLIDTKSGIRKLSLLLEDGKVKE 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 ++VDMGE L +L +R + + F+ + +GNPHA++F+ED+ Sbjct: 118 VTVDMGEARLTSELP-----------ERITVSGLPLSFI----GIDVGNPHAVYFLEDNP 162 Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 DL+ G +H F E VN V S L+ R +ERG G T ACG+ Sbjct: 163 ALKERGFSALDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTG 222 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 A A+V A K + V + +LGG L I + + H +MTG A++ + G+ Sbjct: 223 ATAAVAAGILSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGE 273 >gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 16/276 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN + +D C D + + I+ + LI D +R Sbjct: 5 FTKMHGCGNDYVYVD---CMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKADFRMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119 + N D SE + CGNG RC+ +++ + ++ + T ET+ GI + ++ + VD Sbjct: 62 MFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLAEVD 121 Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+ ++ +P+ + +D+ GP F VSMGNPH + FVED + Sbjct: 122 MGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVED-VETA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA---SVVA 235 + + G ++ P+F E N+ ++ + R WERG G T ACG+ ACA + V Sbjct: 181 PVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYTCVT 240 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G K + V+ GG L + + + + + G A Sbjct: 241 LGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPA 276 >gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] Length = 1355 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 140/293 (47%), Gaps = 27/293 (9%) Query: 7 DFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 +F KM G GN + D C HD +A++ +D H+ D ++L+ A Sbjct: 1072 NFTKMHGCGNDYIYFD---CFQHDINNPEALSVRLSD--RHYGIGGDGVILVCPSDVA-- 1124 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENR 112 D +R+ N DGSE + CGNG+RCV +FL ++ T ET+ GI + + + Sbjct: 1125 DGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYNDRK 1184 Query: 113 DGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 ++ VDMG+ L LIP+ A DR P + VSMGNPH + F Sbjct: 1185 VCAMKVDMGKAELTPALIPVDASKLPDPKADRIVNAPYTVDGVEYHVTCVSMGNPHCVVF 1244 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSA 228 ++D+ D+ G +F E VN RV +L +R WERG G T G+ Sbjct: 1245 -KNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETWACGTGAC 1303 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A A K + ++VK++GG L+I + D+ V+MTG A +EG ++I Sbjct: 1304 AAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDDT-VYMTGNAVTVYEGVVEI 1355 >gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] Length = 350 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 22/292 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-----FDQIMLIHDFQDASV 60 V F KM G+GN ++++ GCH +SD I++ + + + DQ ++ ++ S Sbjct: 5 VPFVKMHGLGNDFVIVN--GCHMPKSSD-IHSFAKEISDRELGVGCDQFII---YRQDSD 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I N DGS ++CGN RC+ R L K+ + ++ K +I VDM Sbjct: 59 KINMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P + + +R+ I P + V + NPH + F + L D+ Sbjct: 119 GPPSFESSWMPDSTDLCSL-AERYMIEP------KEMICVDVANPHLVIFSK--LSKKDM 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 GN K +F +GVN++ AR+ ++L WERG G T ACGS A A+ A+ L Sbjct: 170 GMIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLS 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + G L ++ N+ V M+G A + G+L + K + D Sbjct: 229 FFGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGELLKRAAKLSNEKAD 279 >gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] Length = 335 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 23/281 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQD---- 57 M K+ G N ++D +T D + L+ TD D Sbjct: 2 MTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLARQLTDPQDGLLGGADGLLVVDRPTR 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ + Sbjct: 62 PGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQAGE---- 117 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + G P ++ P+ A FD + DR PV L F +++ NPH I FV Sbjct: 118 LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFV 177 Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + L G+ L +P FS+GVN++ A++ + L +RT+ERGVG T ACG+ Sbjct: 178 NQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFTNACGTGM 237 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 A+ +A LH + AV+V GG + H +H + Sbjct: 238 SATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRY 278 >gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 328 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + Sbjct: 61 PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ + FD + DR V L F +++ NPH I F+ Sbjct: 121 V----PAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+G+N++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 AS +A H + +SV GG + H +H + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277 >gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091] gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091] Length = 292 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 16/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVDA 62 ++F KM +GN +VI+ + I +A N LS D T + +I + D Sbjct: 5 IEFTKMHALGNDYIVINETET-EVIPEEAKNKLSNDICTRRFSVGSDGVIFACKSDKSDV 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 RI N DGSE + CGNG+RC+ +++ +K+++ ET+ I L +++ SI Sbjct: 64 RFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVKSI 123 Query: 117 SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMG+ + IP +A S + + I + + VS+GNPHA+ F + ++ Sbjct: 124 AIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKIIMSS--VSVGNPHAVSFTDINI 181 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL +G + H F E VN+ + S +++ TWERG G T ACG+ + V+ Sbjct: 182 DDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVLL 241 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDI 281 + N V + GG L I D+N M G+A ++ ++ + Sbjct: 242 GYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTV 290 >gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1] gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1] Length = 289 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 21/283 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K G+GN+ +V+D ++TS++I + + HF D ++L D Sbjct: 6 FVKSHGLGNEYIVLDDENIDFSLTSESIKTIC---DVHFGIGSDGVLL--KVHSEKADFG 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK--ENRDGS---I 116 +RI N DGSE + GNG+R ++L ++ FT ET G++ A+ E +G I Sbjct: 61 LRIFNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VD+G+ + IP++ D+ ++ + + F N VS+GNPH + V D L Sbjct: 121 TVDIGKATFKTEDIPVSIEKDECIGEKIVVD--DREFEIN--CVSVGNPHCVIIV-DKLD 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + +G L+ H +F N+ + S + +++R WERG G T A G+++ A Sbjct: 176 DEIVKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVM 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T+R V+V M GG L I + ++ MTGE ++ G L Sbjct: 236 VKRGITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVL 278 >gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG'] Length = 290 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 19/280 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64 DF K G+GN +V M +T + I L D N D I+L+ AS + Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIR-LVCDRNFGVGSDGILLL---TRASEPFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK-----ENRDGSIS 117 RI N DGSE + GNG+R +FL + F ET+ G++ A+ NR + Sbjct: 60 RIFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVK 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+ +D + + LA + + P L ++ +S+GNPH +FF E+ L Sbjct: 120 VDMGKATVDPRSVGLANPDKPFVEELLELAP--DLRIKG-TAISVGNPHFVFFREE-LDE 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ S Sbjct: 176 KFMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSV 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L K V V+M GG L I+ + M G + G Sbjct: 236 MLGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSG 275 >gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] Length = 280 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 32/290 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN ++++ I + FDQ++++ + + D + +I Sbjct: 7 FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSRFDFYCQI 66 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR----GILVAKENRDGSISVDMGE 122 N DG+E CGNG RC+ +++ + +K F IR ++ + ++R I+V+MG Sbjct: 67 FNSDGTESFQCGNGFRCLAKYIYVNINKKP--FHIIRTKKHTVITSIKDRGKEITVNMGT 124 Query: 123 P-ILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P + K++ + R +++ H VN +GN H +F ++D Sbjct: 125 PRFISKKVLTVFQKEWLRQLLTFEKEYNHFEMVN-----------IGNSHLVFIIQDSK- 172 Query: 177 HYDLASFGNL----LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 ++ L L + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACAS Sbjct: 173 --EIVRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACAS 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V N V V G L + W ++ +FMTG A ++G + I Sbjct: 231 VAFGIKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280 >gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 275 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 19/279 (6%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G GN + V D ++ S A+ D ++++ Q A +A + I Sbjct: 3 FYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVA--EAKMII 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120 IN DGS CGN +RC +++ + + F+ ET G+ ++ ++ + + V M Sbjct: 61 INADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKVYM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IPL+ D +D + G V +G PH I F D Y + Sbjct: 121 GKPSYRAEDIPLSHGEDFIDSEITCNGKT-----YKATTVLVGVPHTIIFENTD--EYVV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L KH +F+EG N++ ++ + + TWERG G T ACG+ ASVV + L Sbjct: 174 NEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKKLG 233 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 N + + VK GG L+IE + ++ V+M G A+ +EG Sbjct: 234 LVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEG 271 >gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73] gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas albilineans] Length = 286 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 + + + F KM+G GN +V+D+R + DA A+ D HF DQI+ I ++ Sbjct: 8 RGARLRFTKMQGAGNDFVVLDLR--DGSSPPDAALAVRLADR-HFGIGCDQILTIEPARN 64 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115 A+ A RI N DGS CGNG RCV +L F E+ G + D Sbjct: 65 AAALASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQ 124 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + +PL D +D ++ P++ +R VSMGNPHA+ V + Sbjct: 125 FAVAMGVPRFAPEDVPLIGFPDALDE---YLLPMHGESVRF-GAVSMGNPHAVLEV-GLV 179 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL +H F + VN+ +V + L LR +ERGVG T ACGS ACA+ Sbjct: 180 DAAPVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAV 239 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 + +R V V + GG L ++W H + M+G A ++G+ Sbjct: 240 LMQRGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGE 283 >gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 328 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MNKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ + FD + +R V L F +++ NPH I F+ Sbjct: 121 V----PAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 AS +A H + +SV GG + H +H + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277 >gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] Length = 270 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 132/285 (46%), Gaps = 35/285 (12%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62 + F KM G GN + ID R G D I + + N D +MLI + A D Sbjct: 3 IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 R NCDGSE + CGNG RC RF + + + TFET+ GI+ A+ ++ V + Sbjct: 61 KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120 Query: 122 EPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P D+++ ++D + I VN G PHA+ F +D+ + Sbjct: 121 TPFDEKSDYQI--------ELDEKKLDISSVN-----------TGVPHAVMFC-NDIENI 160 Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSA--ACASVV 234 D+ G+ + H F G N + + L +RT+ERGV G T ACG+ ACA Sbjct: 161 DIMKLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K+ V K G +L + +N V++ GEA+ ++G+L Sbjct: 221 VKKGLTKS--PVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGEL 263 >gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila] gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila SB210] Length = 310 Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 37/308 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNTHF--DQIMLIH---- 53 ++ F K G+GN ++ID R C + I A D + D +M + Sbjct: 2 ILHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENESE 61 Query: 54 -DFQDA-SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVA 108 D QD D +I N DG E Q CGNG+RC R++ + +K T G+L Sbjct: 62 KDKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLEC 121 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFD------------KMDRDRFHIGPVNHLFLRN 156 +E G ++G+ + IP A F+ K++++ H ++HL Sbjct: 122 EELSLGLYRTNIGKATAEISKIP-ANPFNSDAESVVINQPLKINQN-LHQQNLSHLSEET 179 Query: 157 PFV--VSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLR 213 +V V++GNPH + +V DD+ ++ G L ++ +F + VN+ ++ +L +R Sbjct: 180 HYVTFVNVGNPHCVIYV-DDVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMR 238 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKML-GGGLLIEWHDNNHVF-MTGEA 271 +ERG G T ACG+ ACASV A G L+K N S +L GG L I + ++ + G A Sbjct: 239 VYERGCGETMACGTGACASVFA-GILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPA 297 Query: 272 KKEWEGKL 279 K +EG + Sbjct: 298 AKVFEGSI 305 >gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] Length = 334 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 22/253 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170 V P ++ P+ A FD + DR P + LR +++ NPH I F Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFS-SIAVPNPHLISF 175 Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 176 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHK 241 A+ +A CL K Sbjct: 236 MSATSLAF-CLTK 247 >gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] Length = 334 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 23/268 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D +T + + + + +D T D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + + SF +T+ L ++++D + + Sbjct: 61 EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKDFAPN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A FD + DR + ++ F +++ NPH I F+ Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L + G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 A+ +A H + +SV GG Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGG 264 >gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] Length = 276 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 132/284 (46%), Gaps = 23/284 (8%) Query: 5 MVDFAKMEGIGNKILVIDM---RGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 M++F K+ G GN +VID +N +D A+ D I+ I A Sbjct: 1 MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYISGSDKA-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--- 115 D +R++ D SE + CGNG+RC+V++ + T ETI + K +D Sbjct: 59 DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118 Query: 116 ISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V+MG+P+ IP S D H PV+ VV+ G PHA+ FVE+ Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHDYPVS--------VVNTGVPHAVIFVEN- 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 +++ + + F G N++ R+ S + + +RT+ERGV T +CG+ + AS Sbjct: 170 -LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASA 228 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 S L K N V V GG L IE ++M G A+ ++G Sbjct: 229 YISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKG 272 >gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] Length = 329 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 23/280 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-------FDQIMLIHDFQD 57 M + K+ G N ++D +T D + AL+ + D +++++ Sbjct: 1 MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R + F +T+ L ++ D Sbjct: 61 EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + G P ++ P+ A +D + DR V L F +++ NPH I FV Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++ + +L G L ++P FS+GVN++ + + ++T+ERGVG T ACG+ Sbjct: 177 DENGFK-ELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266 A+ +A +H + ++V GG + H NH + Sbjct: 236 ATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRY 275 >gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 164 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP L R+ F NH + VSMGNPHA+ FV DD+ Sbjct: 1 MGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQA 55 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 56 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 115 Query: 239 LHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 116 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 161 >gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] Length = 278 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 28/280 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT---HF----DQIMLIHDFQDASV 60 F+KM+ GN ++++ + ++N T HF D +M A + Sbjct: 3 FSKMQAAGNDFILVN------GMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKADI 56 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRD 113 + N DGS + CGNG+RC +F+ +K++ F+ ET GI K E Sbjct: 57 KMYYY--NSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNI 114 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VDMG+ K IP + + + I +F V MG PH FVE+ Sbjct: 115 EYLEVDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVFSS----VLMGVPHTTIFVEN 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS- 232 YD+ G+L+ K+ +F E N++ A++ + +++ ++TWERG G T CG+ CA+ Sbjct: 171 -FDEYDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATA 229 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 +A + + GG L IE +N + M+G+A+ Sbjct: 230 ALAYKLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAE 269 >gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 30/227 (13%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS Q CGNG+R VR+L K T G+ N DG+I+ D+ Sbjct: 78 FMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLNDDGTITADL 137 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L A + D H P H V MGNPHA+ FV+D L Sbjct: 138 GEPALPGP----AGIVVEAD---GHQWPATH--------VDMGNPHAVVFVDD------L 176 Query: 181 ASFGNLL-----AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G L+ + F GVN+ ++ +R ERG G T +CG+ CA VA Sbjct: 177 REPGPLVDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCAVTVA 236 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S + R V+ V +LGG + + W +NHV +TG A G+ D Sbjct: 237 SARAARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFD 283 >gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 306 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 84/297 (28%), Positives = 128/297 (43%), Gaps = 41/297 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAI-----NALSTDDNTHFDQIMLIHDFQDA 58 M F K + +GN +VID R + DA+ N D + I +H A Sbjct: 1 MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPVH----A 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDG 114 S +RI N DGSE + GNG+R + +R + FT T+ G + + G Sbjct: 57 SRPVQLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAG 116 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----------SMGN 164 +SV MGEP + +P+ +G + L + P +V ++GN Sbjct: 117 VVSVGMGEPCFEAAAVPM-------------LG-ITGLAVEQPLLVDGRQLTVTALNLGN 162 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ E A G L+A+H F N+ RV ++ + WERG G T A Sbjct: 163 PHAVVLTEHPTRELACA-LGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLA 221 Query: 225 CGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 GS+ CA+ + L + T ++V+M GG + + + V MTG A+ G L Sbjct: 222 SGSSGCAATAVAHRLGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278 >gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] Length = 330 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 25/282 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G NK ++D ++ + AL+ T+ T D +++I D Sbjct: 1 MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 +++IN DGS CGNG+R V R+L+ + + F ET+ L D Sbjct: 61 PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHREADLADN 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + SV++ + +P FD + D V F +S+ NPH I FV Sbjct: 121 VPTFSVEISPVTFAKETLP----FDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176 Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ H L G +L +P F +GVN+S A++ +L +RT+ERGVG T ACG+ Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKTNRA-----VSVKMLGGGLLIEWHDNNHVF 266 A+ +A CL+ A +SV GG + H + F Sbjct: 237 SATSLAF-CLNHPEMADFDELISVYNPGGMVKTRVHSRDDTF 277 >gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] Length = 324 Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 29/290 (10%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDAFI 64 K G GN ++ID D T + +LS +D D ++ I + + DA + Sbjct: 7 KCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNSEHC--DARM 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG--- 121 R+ N DG+E + CGNG+RCV R+ ++ +K ET++ L ++ D + DM Sbjct: 65 RMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTED--LYPDMKTYE 122 Query: 122 ---EPI-LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176 EP+ LD +PL ++ DR P+ L F +S+ NPH + V +D+ Sbjct: 123 VAIEPVSLDPVSLPL-KTVHAPHIDR----PIPALSDNLSFTALSVPNPHVVTKV-NDVP 176 Query: 177 HYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H D S G L +F GVN+S + + + ++T+ERGVGLT ACG+A AS + Sbjct: 177 HRDAESIGRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAMSASSLV 236 Query: 236 S--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD 280 S + N ++V GG + H + V+ + G A E+ L+ Sbjct: 237 SVLNAGNDLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLE 286 >gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c] gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c] Length = 284 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 93/279 (33%), Positives = 139/279 (49%), Gaps = 19/279 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D+R D + ++ + HF DQ++ I + V A Sbjct: 12 FTKMQGAGNDFVVLDLR---DGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDM 120 RI N DGS Q CGNG RCV +L + + F ++ ++ LV +D +V+M Sbjct: 69 YRIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKD-EYAVEM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179 G P+ + + IPL+ + ++ + LR VSMGNPHA+ VE DL Sbjct: 128 GLPVFEPERIPLSGFPNACGE---YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V Sbjct: 182 VERIGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQR 241 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + R V V + GG L ++W V ++G AK ++G Sbjct: 242 GRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDG 280 >gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] Length = 329 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56 MV K+ G N+ ++D + + + AL+ TD D +++I H Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 D ++ + +++IN DGS CGNG+R V R+L+ + + SF ET+ L +R+ S+ Sbjct: 61 DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 + G P ++ P+ + FD +D D V F +++ NPH I F Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175 Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V +++ + D L G L + +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 176 VSEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271 A+ +A CL+ +SV GG + HD++ H+ + G A Sbjct: 236 MSATSLAF-CLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285 >gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 26/285 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 S + F K GN LVI+ R S A + + D I + D S F Sbjct: 2 SGIGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLDRRADGSF--F 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVD 119 +R+ N DGSE + GNG RCV +L + R+ T GI L+ ++ + I Sbjct: 60 LRLFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESA 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P +++P A I VN + +V++GNPH + F + + + Sbjct: 120 MGVP----RVMPRA----------IEIAGVNGVI--EGAMVNVGNPHYVIFPDSEDFSSH 163 Query: 180 LASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 S+ L AK P+F G N+ RV + + ++ R +ERG G T + G+ CAS A+ Sbjct: 164 GMSWQELGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAA 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 L R ++ GG + W D+ + + +TG A+ +G+++ Sbjct: 224 MTLRAVARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268 >gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 284 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115 A I NCDGS + CGNG RCV +L + + F ++ + G Sbjct: 63 EGAVAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGR 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGIPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 + R V V + GG L I W D+ V M+G A EW G Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284 >gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32] gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463] Length = 334 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 22/253 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170 V P ++ P+ A FD + R P + LR +++ NPH I F Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFS-SIAVPNPHLISF 175 Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 176 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHK 241 A+ +A CL K Sbjct: 236 MSATSLAF-CLTK 247 >gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 329 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56 MV K+ G N+ ++D + + + AL+ TD D +++I H Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 D ++ + +++IN DGS CGNG+R V R+L+ + + SF ET+ L +R+ S+ Sbjct: 61 DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 + G P ++ P+ + FD +D D V F +++ NPH I F Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175 Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V +++ + D L G L + +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 176 VSEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271 A+ +A CL+ +SV GG + HD++ H+ + G A Sbjct: 236 MSATSLAF-CLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285 >gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] Length = 272 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%) Query: 8 FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53 F+KM G GN +VI+ + CH A D I+++ Sbjct: 3 FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILV 107 ++ + D + IIN DGS CGNG+RC +++ + K + + G L Sbjct: 51 --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 ++++ SI+V+MG K IP A +++ + +G N + MG PH Sbjct: 109 IEKDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F E++ Y + FG + K+ +F +G N++ +V ++++RTWERG G T ACG+ Sbjct: 164 IIF-EEEKYPIE---FGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CASV+A+ L ++ V V + GG L + D+ V M G A Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262 >gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] Length = 329 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56 MV K+ G N+ ++D + + + AL+ TD D +++I H Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 D ++ + +++IN DGS CGNG+R V R+L+ + + SF ET+ L +R+ S+ Sbjct: 61 DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 + G P ++ P+ + FD +D D V F +++ NPH I F Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175 Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V +++ + D L G L + +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 176 VSEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271 A+ +A CL+ +SV GG + HD++ H+ + G A Sbjct: 236 MSATSLAF-CLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285 >gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] Length = 355 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 22/253 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 22 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 81 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 82 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 141 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170 V P ++ P+ A FD + R P + LR +++ NPH I F Sbjct: 142 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFS-SIAVPNPHLISF 196 Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 197 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 256 Query: 229 ACASVVASGCLHK 241 A+ +A CL K Sbjct: 257 MSATSLAF-CLTK 268 >gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 171 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/167 (39%), Positives = 87/167 (52%), Gaps = 9/167 (5%) Query: 113 DGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 D I V+MGEPI + IP A F+K R I V VSMGNPH + V Sbjct: 8 DNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV 61 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ ++ G+LL H F E VN ++ + E + LR +ERG G T ACGS ACA Sbjct: 62 -DDIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACA 120 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 +V N V V + GG L+IEW+ H ++MTGEA ++G Sbjct: 121 AVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 167 >gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] Length = 280 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 143/288 (49%), Gaps = 27/288 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF----DQIMLIH--DFQDA 58 V F KM+G GN +V+ D + ++ L+ + HF D +++++ D Sbjct: 3 VQFKKMQGTGNDFIVVKY---DDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIADI 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 +D + N DGS CGNG+RC +F+ ++ K F+ ET+ GI ++ ++ Sbjct: 60 RMDYY----NSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGT 115 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 S+ V+MG+ D + IP+ + +G + + VSMG PH I F E Sbjct: 116 VKSVEVNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFIIT----AVSMGVPHVIIFTE 171 Query: 173 D-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + FG L+ KH +F + N++ +++ +RTWERG G T ACG+ + + Sbjct: 172 KLDLEQ--IKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTS 229 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V + L N V+V++ GG + I+ ++ ++FM G A+ G+ Sbjct: 230 AVAVANKLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277 >gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 284 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 133/287 (46%), Gaps = 19/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115 A I NCDGS + CGNG RCV +L + F + A E+ DG Sbjct: 63 EGAVAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDR 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGIPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 + R V V + GG L I W D+ V M+G A EW G Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284 >gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] Length = 283 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQ-DAS 59 S+ + F+KM G GN +VID+R T + + A D +T DQI+ I + D S Sbjct: 6 STALRFSKMHGAGNDFVVIDLRDGTAPPTPE-LAARLADRHTGVGCDQILTIEAPRADGS 64 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSI 116 V ++ RI N DGS + CGNG RC+ +L + F I L + E + DG Sbjct: 65 VASY-RIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVF-VIDSPLASHEVKVLGDGQF 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V MG P + +PL F R+ + + P+ +R VSMGNPHA+ V + Sbjct: 123 AVTMGVPAFEPSNVPLV-GF-AHPREEYLL-PLQGESVRF-AAVSMGNPHAVIEV-GLID 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 AAPVERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTL 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R + + GG L I+W D V M G +EG+ Sbjct: 238 MQRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] Length = 270 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 117/269 (43%), Gaps = 18/269 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN +++ R N++ A N DQ ++ ++ + Sbjct: 5 INFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNNVYT--- 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T + L+ ISV++G Sbjct: 62 MIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVGNV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + +P RDR ++ L+ V +GNPH I F L D Sbjct: 122 SFNETWMP--------SRDRIWAFAERYMLDLKETMCVDIGNPHLIIF--SKLEPQDQKI 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L +F +GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 172 IGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFV 230 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 + +V G L+++ D N + M GEA Sbjct: 231 HSPSTVVFKYGNLIMQEEDGN-IIMQGEA 258 >gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018] Length = 333 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 26/298 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN ++ID + N+ + AI A + D I+ + + Sbjct: 14 INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQ--KSDIC 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115 DA +RI N DGSE + CGNG+RCV R++ + ++S ET++ K D + Sbjct: 72 DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--D 173 + +D+ LD K +PL +K+ D+ I ++ F + VS+ NPH I V D Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDK--IPELSDEF--DFTAVSITNPHLIAIVNNID 187 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ GN + + +GVN+S +V ++ ++T+ERGVGLT +CG+A AS Sbjct: 188 SDKLVEIGKKGN--STKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASS 245 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKTGK 285 + S K + A++V GG + H N V G A +EG +++ K Sbjct: 246 IVSCIGEKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRK 303 >gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] Length = 300 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 43/305 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63 F KM G GN + ++ C + + + H D ++L+ + A D Sbjct: 3 FTKMHGCGNDYVYVN---CFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCE 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + I N DGS+ + CGNG+RCV +F+ + + + T +T G+ L + + Sbjct: 58 MDIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVR 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVED- 173 V+MG+ + +P+ D + P+ + F VSMGNPHA+ F ++ Sbjct: 118 VNMGKAEIVASKVPVI-----ADTELAVGAPITVKDQAFTYT--AVSMGNPHAVVFTDEN 170 Query: 174 --------------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 DL + G HP F + +N V ++++R WERG Sbjct: 171 PALANAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGS 230 Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWE 276 G T ACG+ ACA+ VAS K R V+VK+LGG L+IEW + N V+MTG A +E Sbjct: 231 GETMACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFE 290 Query: 277 GKLDI 281 G+LD+ Sbjct: 291 GELDL 295 >gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] Length = 270 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 32/285 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDA 58 S ++F KM G+GN ++++ R D ++S ++ L+ D +T DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKR---DLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHND- 58 Query: 59 SVDAFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F +I N DGS + CGN RC+ + + +K T L+ + +I Sbjct: 59 ----FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNI 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV++G + +P S DK+ + + + L+ V +GNPH + F L Sbjct: 115 SVNVGSVSFNEAWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLE 165 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D G L +F++GVN++ A V + L WERGVG T ACGS AC S A Sbjct: 166 PQDQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAG 224 Query: 237 ---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G +H A S+ + G+L +N ++ M G AK +G+ Sbjct: 225 LKLGFIH----APSMVVFKHGILTMKEENGNIIMQGSAKLVAQGE 265 >gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 141/295 (47%), Gaps = 43/295 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+GIGN + ++ C + +D + HF D ++LI + D Sbjct: 9 FTKMQGIGNDYVYVN---CFEETVADPAAVARFVSDRHFGIGSDGLILIG--PSGTADCR 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK---ENRDGS- 115 + + N DGS CGNG+RCV ++ R+S T ET+ G+ + E ++G Sbjct: 64 MDMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIEFTVEEKNGRF 123 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++VDMGE L +L P + D RD +G +S+GNPHA++F+ Sbjct: 124 TARLLTVDMGEARLTSEL-PEPINVDG--RDYSFVG------------ISVGNPHAVYFM 168 Query: 172 E--DDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + DDL L G HP F + VN ++ + +R WERG G T ACG+ Sbjct: 169 DSIDDLR---LDRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTG 225 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 A AS A+ + T V V++ GG L I ++ H+FMTG A + + G +DI Sbjct: 226 ATASAAAAILMGYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIP 280 >gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 284 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 134/287 (46%), Gaps = 19/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R +D L+ + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLA---DRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 A I N DGS + CGNG RCV +L + + F ++ + G Sbjct: 63 EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGR 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGMPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 + R V V + GG L I W D+ V M+G A EW G Sbjct: 238 LMQRGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284 >gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] Length = 281 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 138/290 (47%), Gaps = 22/290 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F K +G GN ++++ + + D S HF D ++++ + Sbjct: 1 MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLILKYVANM-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRDGS 115 F+ N DGS+ CGNG+RC +L + + +FT +T+ G I EN Sbjct: 59 -PFMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MGEP+ D K + ++++RF + + MG H++ FV +D Sbjct: 118 AKVNMGEPVFDVKKLI------NIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-ND 170 Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 Y++ G+ + + +F + VN++ +V ++++ TWERG G T ACG+ A AS Sbjct: 171 FSDYNIDDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASA 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 V + ++V + GG L+I++ + +MTG ++K EG+ K Sbjct: 231 VLARIYGYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQYIFK 280 >gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] Length = 270 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 24/274 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ +L + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHND---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + ++ T L+ N + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + +P S DK+ +R+ I L+ V +GNPH + F L Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKETICVDIGNPHVVIF--SKLEP 166 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D G L +F++GVN++ A V + L WERGVGLT ACGS AC S A+G Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGS-FAAG 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 H + S + G L +N ++ M G A Sbjct: 225 LKHGFIHSPSTIVFKHGNLTMKEENGNIIMQGAA 258 >gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] Length = 299 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 31/285 (10%) Query: 8 FAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 FAK+ G GN +++D + AI D ++ + Q + D Sbjct: 23 FAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--DLG 80 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL-VAKENRDGSI--SVD 119 +R+ DGSE + CGNG+RC+ ++ S +SF ET+ GI+ + RDGS VD Sbjct: 81 MRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWARVD 140 Query: 120 MGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLY 176 MG P + IP S D MD F + VN G PHA+ FV+D D+ Sbjct: 141 MGVPRFNRPSIPACGSGDLMDEQMGEFRVCAVN-----------TGVPHAVIFVDDLDID 189 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 Y+ A + +F EG N+ ++ S SL +RT+ERGV G T +CG+ A AS Sbjct: 190 IYEAAP---PIRHCSVFPEGANVDFVKLGS--SLQIRTFERGVEGETFSCGTGAVASASV 244 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + V V+ GG L+I + + + FM G A + ++D Sbjct: 245 ARRMGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288 >gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] Length = 335 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + T+ T + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116 + + ++N DGS + CGNG+R V R+L+ + + +F T + VAK++ S Sbjct: 61 TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLAS- 117 Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169 G P ++ P++ + F + DR + P H L+ V++ NPH I Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172 Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 FV +++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 173 FVSKEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232 Query: 228 AACASVVASGCLHKTNRA 245 A+ +A H A Sbjct: 233 GMSATTLAFILTHPQEAA 250 >gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] Length = 287 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S ++F KM+G GN + + C + S+ + HF D I+LI + Sbjct: 6 RSEGMEFTKMQGCGNDYIYFN---CMEQELSEPGPLSVRLSDRHFGIGGDGIVLI--CRS 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI--LVAKENR 112 DA +R+ N DGSE + CGN +RCV ++L+ + ET+ G+ LV + R Sbjct: 61 DIADAKMRMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQR 120 Query: 113 DG--SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G S++VDMG + +P+ ++ IG ++ N VSMGNPH + Sbjct: 121 SGVRSVTVDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVL 176 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSA 228 DD+ ++ G +F E VN ++T +L +R WERG G T G+ Sbjct: 177 C-DDVEGLEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGAC 235 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A A L + V++ GG LLI++ D V MTG A K ++G + + Sbjct: 236 AAAVAAVENGLCAKGEDIIVRLNGGNLLIKYTDKT-VTMTGTADKVFDGTIKL 287 >gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] Length = 259 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 40/284 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+ +GN + ++ + I + ++ A D HF D ++LI DF + + D Sbjct: 3 FTKMQALGNDYIYVN--AMEEKIENPSVLAQKLSDR-HFGVGGDGLILI-DFSEKA-DVK 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK---ENRDGSISV 118 +R+ N DG+E + CGNG+RCV +++ +K K+ ET GI+ K + +I Sbjct: 58 MRMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILA 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + + + ++ D +SMGNPH + +V+D Sbjct: 118 DMGQPSIGEENKKIVMGEEEYTAD----------------YISMGNPHLVVYVDDP---- 157 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + K E VN+ V + + +R ERG G T ACG+ ACA+ V+ Sbjct: 158 -----KRIQMKEWQEYEKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSCMK 212 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V+M GG L +EW D+NH+F GEAK +EG++DI Sbjct: 213 KQYVDNYVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256 >gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 346 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 68 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 124 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 A I N DGS + CGNG RCV +L + + F ++ + G Sbjct: 125 EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGR 184 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P D IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 185 YAVAMGMPQFDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRV 239 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 240 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 299 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 + R V V + GG L I W D+ V M+G A EW G Sbjct: 300 LMQRCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 346 >gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12] gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 278 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 33/293 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDF 55 ++S + F KME GN ++ D R N IN L+ + HF D I+ Sbjct: 7 LRSKKMKFWKMEAAGNDFVIFDGR----NRKIREINKLAKKLCDRHFGIGADGILFCE-- 60 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVA 108 + D + N DGS + CGNG+RC+ R++ + + + T ET G+ V Sbjct: 61 SSSIADMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVD 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 ++N+ S+ V MG+ +W+ + +R I +F R V++G PH Sbjct: 121 EKNQVSSVQVKMGKA--EWE--------KEFQEERVEIEGREFVFYR----VTVGVPHIA 166 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 VED + +L +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + Sbjct: 167 ILVEDFMKDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTG 226 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V L K + GG + +E D + V + G+A + G +D+ Sbjct: 227 CSSCGVILQHLQKISGEAHFYTEGGDVFVEVKD-DVVMIYGKANFVFAGDIDV 278 >gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] Length = 278 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 16/274 (5%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+ GN ++++ M N A D +M + A + + Sbjct: 3 FSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKADIK--MNY 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD--GSIS---VD 119 N DGS + CGNG+RC +F+ +K+ F+ ET GI K + G+I VD Sbjct: 61 YNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLKVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M + K +P + + + IG +F V MG PH FVED YD Sbjct: 121 MEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIFSS----VLMGVPHTTIFVED-FDEYD 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGC 238 + G+L+ K +F E N++ A+VT+ +++ ++TWERG G T CG+ CA+ +A Sbjct: 176 VNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAHKL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + + GG L IE ++ + M+G+A+ Sbjct: 236 GKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAE 269 >gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] Length = 260 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 112/270 (41%), Gaps = 27/270 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + FAK GN LVID DN + + + D + I +A ++A R Sbjct: 4 IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILPTSEADIEA--R 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDMG 121 +IN DGSE + GNG RCV ++ T G+ L MG Sbjct: 62 LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + +L R + +S GNPH + FVE+ + Sbjct: 122 KPEIAGELTVKTRHHETTG-----------------IQLSTGNPHFVIFVEE--FEEGWQ 162 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + +A+ P F G N+ +V SLD+R +ERGVG T + G+ +CAS VA+ K Sbjct: 163 VLADSVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGK 222 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 V V GG +EW + + +TG A Sbjct: 223 CESPVRVATPGGAQTVEW--SGEITLTGPA 250 >gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 284 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 A I N DGS + CGNG RCV +L + + F ++ + G Sbjct: 63 EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGR 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P D IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGMPQFDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 + R V V + GG L I W D+ V M+G A EW G Sbjct: 238 LMQRCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 284 >gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] Length = 285 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 17/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 ++F K G+GN +V D + +T + L D N D I+++ + Sbjct: 1 MEFIKSHGLGNDYIVFDKEKINFPLTEKNVR-LICDRNYGIGSDGILILEKINNQEFK-- 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-----ILVAKENRDGSI 116 +RI N DGSE + GNG+R + +++ K F T+ G I+ ++ R SI Sbjct: 58 VRIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSI 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ IP+ S ++ + I N ++ +S+GNPH +FFV D++ Sbjct: 118 EVEMGKITFKSSEIPVLGSEREIIDEELKI---NDETIKVT-CLSIGNPHCVFFV-DEIN 172 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + S G + HPMF +N+ + +V S + +++R WERG G T A GS++CA+ AS Sbjct: 173 EEKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASAS 232 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V M GG L ++ + + V + G A++ ++G+L Sbjct: 233 YKKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGEL 275 >gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] Length = 289 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 20/286 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F K G+GN + +D + +T+ I A+ + D I+ + ++A D +R Sbjct: 4 SFFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA--DFGLR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE---NRDGSI---S 117 I N DGSE + GNG+R FL T + KR+SF+ ET +G LV E +R+G + + Sbjct: 62 IFNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVET-KGGLVHVELTLDRNGQVNGAT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE--DD 174 VDMG + +P + + P+ + F VS+GNPH + F + Sbjct: 121 VDMGRASFRPRDLPCT-----IKAPELIMQPIKAVGQSLRFTGVSVGNPHCVVFRDRGGS 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL G L HP F + N+ +A T ++ + WERG G T A GS+ACA Sbjct: 176 WTREDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSACAVAS 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A L V V GG L I + + G + ++G+ Sbjct: 236 AGVRLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRFS 281 >gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] Length = 272 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 44/284 (15%) Query: 8 FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53 F+KM G GN +VI+ + CH A D I+++ Sbjct: 3 FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108 ++ + D + IIN DGS CGNG+RC +++ + K T + ++ I + Sbjct: 51 --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108 Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 EN + SI+V+MG K IP A +++ + +G N + MG PH Sbjct: 109 IENDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F E++ Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ Sbjct: 164 IIF-EEEKYPIEC---GREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CASV+A+ L ++ V V + GG L + D+ V M G A Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262 >gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] Length = 335 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57 M K+ G N+ ++D ++ + AL D T D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET++ L + D Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ A FD++ +R V F +++ NPH I FV Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 172 ED-DLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D +L L G L ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK 241 A+ +A H Sbjct: 237 SATTLAFALTHP 248 >gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] Length = 335 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57 M K+ G N+ ++D ++ + AL D T D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET++ L + D Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ A FD++ +R V F +++ NPH I FV Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 172 ED-DLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D +L L G L ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK 241 A+ +A H Sbjct: 237 SATTLAFALTHP 248 >gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] Length = 272 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 44/284 (15%) Query: 8 FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53 F+KM G GN +VI+ + CH A D I+++ Sbjct: 3 FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108 ++ + D + IIN DGS CGNG+RC +++ + K T + ++ I + Sbjct: 51 --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108 Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 EN + SI+V+MG K IP A +++ + +G N + MG PH Sbjct: 109 IENDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F E++ Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ Sbjct: 164 IIF-EEEKYPIEC---GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CASV+A+ L ++ V V + GG L + D+ V M G A Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262 >gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] Length = 283 Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 131/301 (43%), Gaps = 51/301 (16%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K +G+GN +V+D RG ++I + A + D ++ A + + N Sbjct: 9 KYQGLGNDFVVLDRRGSGEDIDA-ATSRWMCDRRLGIGGDGVLALLPSERGIARMVVHNA 67 Query: 70 DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN--RDGSISVDM----- 120 DGS + CGNG+RC V+FL S ET G+L + G ++VD+ Sbjct: 68 DGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGPA 127 Query: 121 ------------GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 G+P LD L+P H LR + VSMGNPH + Sbjct: 128 RLVAPNLPSGATGQPFLD-ALVP------------------GHPPLRA-YAVSMGNPHMV 167 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D D + G LL HP F + N+ RV S + L + WERG GLT ACG+ Sbjct: 168 LL---DQPLEDASRLGPLLEHHPSFPDRTNVEFVRVDS-DGLTVVVWERGCGLTQACGTG 223 Query: 229 ACASVVASGCLHKTNRA---VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284 ACAS VA+ L K A + V + GG L I D + + + G +EG + +G Sbjct: 224 ACASAVAA-VLAKRLPADAWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSG 282 Query: 285 K 285 + Sbjct: 283 R 283 >gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] Length = 283 Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 13/282 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 S + F+KM G GN +VID+R T + + A D +T DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTVPPTPE-LAARLADRHTGVGCDQILTIEAPRAEGS 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSIS 117 A RI N DGS + CGNG RC+ +L + F I L + + + DG + Sbjct: 65 VASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAF-VIDSPLASHQVKVLGDGHYA 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P + +PL F R+ + + P+ +R VSMGNPHA+ V + Sbjct: 124 VTMGVPAFEPANVPLV-GFAH-PREEYLL-PLQGETVRF-AAVSMGNPHAVIEV-GLIDA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 179 APVERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLM 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R + + GG L I+W D V M G +EG+ Sbjct: 239 QRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 284 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 17/278 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D+R D ++ + HF DQ++ I + V A Sbjct: 12 FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 69 YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 128 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-DL 180 P+ + + IPL+ + + ++ + LR VSMGNPHA+ VE DL + Sbjct: 129 LPVFEPERIPLSGFPNALGE---YVLSLQGEVLRC-GAVSMGNPHAV--VEIDLIDVAPV 182 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V Sbjct: 183 ERIGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRG 242 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + R V V + GG L ++W V ++G A+ ++G Sbjct: 243 RVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280 >gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] Length = 278 Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 40/295 (13%) Query: 8 FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN + +D R DN A+ D ++LI A D +R+ Sbjct: 3 FVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRMRM 60 Query: 67 INCDGSEVQSCGNGMRCVVRFL---------------TSRMKRKSFTFETIRGILVAKEN 111 N DGSE CGN +RCV ++ S +KR T ++G + Sbjct: 61 FNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELT--VVKGAV----- 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRF---HIGPVNHLFLRNPFVVSMGNPHAI 168 + VDMG K +P D D F + N F N V+SMGNPH + Sbjct: 114 --ECVGVDMGRADFAVKNVPFV-----CDEDEFIASELRADNRTF--NATVLSMGNPHCV 164 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV DD+ +++ +G + +P+F E VN+ + +++ +R WERG G T ACG+ Sbjct: 165 VFV-DDVDAFNVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTG 223 Query: 229 ACASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACASV A+ + + V++LGG L ++ + + M G A + + G ++ Sbjct: 224 ACASVAAAARNTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278 >gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] Length = 335 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +++ + A + T+ T + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116 + + ++N DGS + CGNG+R V R+L+ + + +F T + VAK++ S Sbjct: 61 TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLAS- 117 Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169 G P ++ P++ + F + DR + P H L+ V++ NPH I Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172 Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 FV +++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 173 FVSKEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232 Query: 228 AACASVVASGCLHKTNRA 245 A+ +A H A Sbjct: 233 GMSATTLAFILTHPQEAA 250 >gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] Length = 326 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +AS+ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] Length = 334 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-----I 116 A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ + + Sbjct: 65 AQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQATELAPGVLAF 124 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175 +V++ D +P FD + DR PV L F +++ NPH I FV Sbjct: 125 AVEISPVRFDKTALP----FDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFVSQQT 180 Query: 176 YHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L G L +P FS+GVN++ A++ + L +RT+ERGVG T ACG+ A+ Sbjct: 181 IEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACGTGMSATS 240 Query: 234 VASGCLHKTNRA 245 +A LH + A Sbjct: 241 LAFALLHPASAA 252 >gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 284 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 132/284 (46%), Gaps = 15/284 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115 A I N DGS + CGNG RCV +L + F + A E DG Sbjct: 63 DGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDR 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 238 LMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] Length = 341 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 27/285 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTH-----FDQIMLIHDFQDA 58 ++ K+ G GN ++D I+ + L+ D H D I+ + Sbjct: 16 MELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLPETRG 75 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 V +R+IN DGSE CGNG+R V R+L+ + +KSF T+ L ++ + + Sbjct: 76 DVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANE----L 131 Query: 119 DMGEPILDWKLIPLARSFDKMD----RDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE- 172 G ++ P++ S D + ++ H + L F V++ NPH I FV+ Sbjct: 132 APGVKTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKFSAVAVPNPHLISFVDH 191 Query: 173 DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L DL + L ++ +F +GVN+S + S + + +RT+ERGVG T ACG+A Sbjct: 192 ETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACGTAMS 251 Query: 231 ASVVASGCLHKTN-----RAVSVKMLGGGL--LIEWHDNNHVFMT 268 AS + L KT+ + +SVK GG + ++ ++ + FM+ Sbjct: 252 ASSLMY-VLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMS 295 >gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101] gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101] Length = 272 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%) Query: 8 FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53 F+KM G GN +VI+ + CH A D I+++ Sbjct: 3 FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108 ++ + D + IIN DGS CGNG+RC +++ + K T + ++ I + Sbjct: 51 --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108 Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 EN + +I+V+MG K IP A +++ + +G N + MG PH Sbjct: 109 IENDKVKTINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F E++ Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ Sbjct: 164 IIF-EEEKYPIEC---GKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CASV+A+ L ++ V V + GG L + D+ V M G A Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262 >gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 15/208 (7%) Query: 76 SCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 CGNG RC RF L ++ T G +V D + V+MGEP + +P Sbjct: 2 QCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF- 60 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +K ++ + VVSMGNPH + V D++ + + G +L H F Sbjct: 61 -RANKAEKTYIMRAAEQTILC---GVVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERF 115 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHKTNRAVSVKM 250 E N+ +V E + LR +ERG G T ACGS ACA+V + G L + V V++ Sbjct: 116 PERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEE---VRVEL 172 Query: 251 LGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 GG L I W H ++MTG A ++G Sbjct: 173 PGGRLDIAWKGPGHPLYMTGPAAHIYDG 200 >gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 270 Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 124/274 (45%), Gaps = 24/274 (8%) Query: 4 SMVDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S ++F KM G+GN +++ D+ HD ++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSHD-LSQLAKNMADRHTGIGCDQFIIYEEHDD--- 58 Query: 61 DAFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 F +I N DGS + CGN RC+ + + +K T L+ N + +ISV Sbjct: 59 --FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISV 116 Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++G + +P RDR + + L+ V +GNPH + F + L Sbjct: 117 NVGSVSFNEAWMP--------SRDRIWEFAERYMIDLKETICVDIGNPHLVIFSK--LEP 166 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D G L +F++GVN++ A V + L WE+GVGLT ACGS AC S A Sbjct: 167 QDQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGL 225 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L + +V G L ++ +N ++ M G A Sbjct: 226 KLGFIHSPSTVVFKHGNLTMK-EENGNIIMQGAA 258 >gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137] gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012] Length = 326 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017] gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027] gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467] Length = 326 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S V L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] Length = 271 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 32/285 (11%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R +D D I + + D ++LI + VD Sbjct: 3 IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIEN--SDKVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG-SISVDM 120 + N DGS + CGNG RC RF + + K FETI GI+ A E DG ++ V + Sbjct: 61 KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEA-EIMDGFNVKVQL 119 Query: 121 GEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 EP +D+++ L ++ + +N G PH + V+DD+Y Sbjct: 120 TEPFDEKIDYEIEVLG--------EKLTVSSIN-----------TGVPHVVVEVKDDIYS 160 Query: 178 YDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ +G + H ++ G N++ + L +RT+ERGV T ACG+ + A+ + Sbjct: 161 FDVVKYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSII 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + N V ++ G +L + ++ VF+ GEA+ + G L+ Sbjct: 221 AVKKGIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLN 265 >gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 284 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 134/285 (47%), Gaps = 17/285 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114 A I N DGS + CGNG RCV +L + + F ++ A E DG Sbjct: 63 DGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGD 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V Sbjct: 122 RYAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAV 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13] gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13] Length = 272 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%) Query: 8 FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53 F+KM G GN +VI+ + CH A D I+++ Sbjct: 3 FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108 ++ + D + IIN DGS CGNG+RC +++ + K T + ++ I + Sbjct: 51 --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108 Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 EN + +I+V+MG K IP A +++ + +G N + MG PH Sbjct: 109 IENDKVKTINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 I F E++ Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ Sbjct: 164 IIF-EEEKYPIEC---GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CASV+A+ L ++ V V + GG L + D+ V M G A Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262 >gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG] gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG] Length = 326 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + + Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +AS+ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E] gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii] gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22] Length = 270 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 16/268 (5%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R N++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEENNDFYT--- 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN +RC+ + + +++ T + L+ ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNVGNV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P S DK+ + L L+ V +GNPH I F L D Sbjct: 122 SFNETWMP---SRDKI----WKFAERYMLDLKEMLCVDIGNPHLIIF--SKLEPQDKTII 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS ACAS A L + Sbjct: 173 GQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLGFVH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +V G L++ D N + M G A Sbjct: 232 SPSTVVFEYGNLIMREEDGN-IIMQGAA 258 >gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] Length = 333 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 23/268 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +T++ + + + TD D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ A FD + +R V L+ F +++ NPH I FV Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFV 176 Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++L L G L + +P FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 177 SMEELNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 A+ +A H N +SV GG Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGG 264 >gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 267 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 33/286 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62 F KME GN ++ D R N IN L+ + HF D I+ + D Sbjct: 3 FWKMEAAGNDFVIFDGR----NRKIREINKLAKKLCDRHFGIGADGILFCE--SSSIADM 56 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGS 115 + N DGS + CGNG+RC+ R++ + + + T ET G+ V ++N+ S Sbjct: 57 KMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQVSS 116 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG+ +W+ + +R I +F R V++G PH VED + Sbjct: 117 VQVKMGKA--EWE--------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVEDFM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + + V Sbjct: 163 KDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVI 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K + GG + +E D + V + G+A + G +D+ Sbjct: 223 LQHLQKISGEAHFYTEGGDVFVEVKD-DVVMIYGKANFVFAGDIDV 267 >gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] Length = 326 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171 E + +++ SF+ + H+G P +R V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +AS+ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] Length = 269 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 28/282 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R + N++ A N DQ ++ + + Sbjct: 3 SKINFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNN---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + +K T L+ + + ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHY 178 +G + +P RD+ ++ L+ V +GNPH + F L Sbjct: 118 VGAVSFNETWMP--------SRDKIWAFAARYMIDLKETICVDVGNPHLVIF--SKLESQ 167 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236 D G L +F+ GVN++ A + ++L WERGVGLT ACGS AC S A Sbjct: 168 DQKIVGETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLK 226 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G +H + V G L +N ++ M G A EG Sbjct: 227 RGFIHSPSTVV----FKHGSLNMKEENGNIIMQGSATLIAEG 264 >gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B] gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A] Length = 326 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNTGGMVKTVVHETS 272 >gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] Length = 326 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] Length = 275 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 25/282 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D+R D ++ + HF DQ++ I + V A Sbjct: 3 FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 60 YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P+ + + IPL+ + + L L+ + VSMGNPHA+ VE DL Sbjct: 120 LPVFEPERIPLSGFPNALGE--------YVLSLQGEVLCCGAVSMGNPHAV--VEVDLID 169 Query: 178 Y-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V Sbjct: 170 VAPVERIGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVL 229 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + R V V + GG L ++W V ++G A+ ++G Sbjct: 230 MQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 271 >gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23] gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23] gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 284 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 25/282 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D+R D ++ + HF DQ++ I + V A Sbjct: 12 FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 69 YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 128 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177 P+ + + IPL+ + + L L+ + VSMGNPHA+ VE DL Sbjct: 129 LPVFEPERIPLSGFPNALGE--------YVLSLQGEVLCCGAVSMGNPHAV--VEVDLID 178 Query: 178 Y-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V Sbjct: 179 VAPVERIGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVL 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + R V V + GG L ++W V ++G A+ ++G Sbjct: 239 MQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280 >gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000] Length = 326 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---KITVKNAGGMVKTVVHETS 272 >gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76] gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031] gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302] gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342] gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF] Length = 326 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346] Length = 326 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171 E + +++ SF+ + H+G P +R V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] Length = 326 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046] Length = 320 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 22/207 (10%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI---- 116 DA +R+IN DGSE CGNG+RCV R++ ++ ET+ L K R+ SI Sbjct: 57 DAKMRVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVK--REASIFEQL 114 Query: 117 ---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAI---- 168 SV++ PI ++L+ L + + R I P + + PF +S+ NPH I Sbjct: 115 PTYSVEIS-PI-SFELVSLPMKVENRQQLRHEIIPAFSMDI--PFTAISVPNPHLIGIVD 170 Query: 169 -FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 ++E+ L+ LA++ N +++ +GVN+S + S + + +RT+ERGVG T ACG+ Sbjct: 171 HKYMENTLHQEQLAAYLN--SENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGT 228 Query: 228 AACAS-VVASGCLHKTNRAVSVKMLGG 253 A AS ++AS TN V+V GG Sbjct: 229 AMTASALIASIEGFITNSKVTVYNPGG 255 >gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12] gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12] Length = 284 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 19/279 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KM+G GN +V+D+R D ++ + HF DQ++ I + V A Sbjct: 12 FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAA 68 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDM 120 RI N DGS Q CGNG RCV +L + + F ++ ++ V +D +V+M Sbjct: 69 YRIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKD-EYAVEM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179 G P+ + + IPL+ F + ++ + LR VSMGNPHA+ VE DL Sbjct: 128 GLPVFEPERIPLS-GFPNACAE--YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V Sbjct: 182 VERIGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQR 241 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 + R V V + GG L ++W V ++G A+ ++G Sbjct: 242 GRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280 >gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] Length = 283 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 132/284 (46%), Gaps = 15/284 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAARLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DGS 115 + A I N DGS + CGNG RCV +L + F + R G+ Sbjct: 63 SEAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGT 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V MG P + IPLA F R+ + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YAVAMGVPHFEPTQIPLA-GFAHA-REEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 178 DAAPVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGE 281 >gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] Length = 335 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 25/258 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + T+ T + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116 + + ++N DGS + CGNG+R V R+L+ + + +F T + VAK++ S Sbjct: 61 TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLAS- 117 Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169 G P ++ P++ + F + DR + P H L+ V++ NPH I Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGGDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172 Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 FV +++L DL G +L A +P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 173 FVSKEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232 Query: 228 AACASVVASGCLHKTNRA 245 A+ +A H A Sbjct: 233 GMSATTLAFILTHPQEAA 250 >gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244] Length = 326 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171 E + +++ SF+ + H+G P +R V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIS-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] Length = 334 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 154/321 (47%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M++ K+ G N ++D ++ + + T+ T D +++++ Sbjct: 1 MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 ++ +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L + +D + + Sbjct: 61 SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A FD + ++R + ++ F +++ NPH I FV Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + ++ L G L + +P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL--LIEWHDNNH-VFMTGEAKKEWEGKL--- 279 A+ +A H N +SV GG + ++ + N++ + + G A KL Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ G + I+K + AY Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317 >gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141] Length = 326 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + + Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] Length = 287 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 42/288 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+KM GIGN +ID +D A + +F D ++ + D Sbjct: 9 FSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFV--VPSDVADIG 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 R+ N DGSE + CGNG+RC F+ +++++ T ET GI + I+V+ G Sbjct: 67 YRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIE------ITVEDG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---------------VSMGNPH 166 EP+L +K+ M + F + + + + FV V++GNPH Sbjct: 121 EPVL-FKV--------NMGKSTFKVPEIPMIADTDEFVDGDLDVIDTTFKATCVNVGNPH 171 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 AI FV++ + +G + H +F E +N+ V S +RTWERG G+T ACG Sbjct: 172 AILFVDNVDDID-IDKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACG 230 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271 + A ++ +A L ++ V + + GG L E ++ + FM G A Sbjct: 231 TGATSTALAGVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPA 278 >gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043] gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312] gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645] gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630] Length = 326 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + + Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171 E + +++ SF+ + H+G V L L N V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] Length = 284 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114 A I N DGS + CGNG RCV +L + + F ++ A E DG Sbjct: 63 QGAVAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAH-AVERLDGD 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V Sbjct: 122 RYAVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAV 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5] gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5] Length = 270 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 121/273 (44%), Gaps = 22/273 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + +K T L+ N + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHY 178 +G + +P RD+ ++ L+ V +GNPH I F L Sbjct: 118 VGSVSFNEAWMP--------SRDKVWAFAERYMIDLKETICVDIGNPHLIIF--SKLEPQ 167 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 168 DQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLK 226 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L + ++ G L ++ +N ++ M G A Sbjct: 227 LGFIHSPSTIVFKHGNLTMK-EENGNIIMQGAA 258 >gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGIGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114 A I N DGS + CGNG RCV +L + + F ++ A E DG Sbjct: 63 EGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGD 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V Sbjct: 122 RYAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAA 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341] gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62] Length = 326 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 31/221 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ + ++ Sbjct: 65 NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171 E + +++ SF+ + H+G P +R V++ NPH + FV Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176 Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + + +A++ N ++P F EG+N+S + L +RT+ERGVG T+ACG+ Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234 Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A CAS ++ G ++ ++VK GG + H+ + Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272 >gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] Length = 283 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/282 (33%), Positives = 129/282 (45%), Gaps = 13/282 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 S + F+KM G GN +VID+R T + + A D +T DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTAPPTPE-LAAQLADRHTGVGCDQILTIEAPRAEGS 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSIS 117 A RI N DGS + CGNG RC+ +L + F I L + E DG + Sbjct: 65 VASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRF-VIDSPLASHEVEVLGDGQFA 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P + +PL F + ++ P+ +R VSMGNPHA+ V + Sbjct: 124 VTMGVPAFEPANVPLV-GFAHAREE--YLLPLQGESVRF-AAVSMGNPHAVIEV-GLIDA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G LL +H F VN+ A+V LR ERGVG T ACGS ACA+ V Sbjct: 179 APVERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLM 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R + + GG L I+W D V M G +EG+ Sbjct: 239 QRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56] Length = 138 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/138 (44%), Positives = 78/138 (56%), Gaps = 6/138 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR--GIL--VAKENRDGSISV 118 FI I+N DGS+ Q+CG + R R R R GIL V E RD + Sbjct: 62 FIDILNSDGSKAQACGK-RHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRD-DLPS 119 Query: 119 DMGEPILDWKLIPLARSF 136 DMG+P+ DW P F Sbjct: 120 DMGKPVFDWGQDPALGRF 137 >gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] Length = 327 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 121/271 (44%), Gaps = 18/271 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62 ++ K G GN +ID N T + L+ D +T ++ + DA Sbjct: 3 IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKADA 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GSIS 117 +R+ N DGSE CGNG+RCV R++ + K ET++ L K+ D + Sbjct: 63 RMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPTYL 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176 V++ D K +PL +D+D V+ + F +++ NPH + VE + Sbjct: 123 VEISPVSFDLKDLPLV-----LDKDTIINEKVSGISEELAFTALAVPNPHFVSIVEKEQI 177 Query: 177 HYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL + P F +GVN+S + + +RT+ERGVG T ACG+A AS + Sbjct: 178 TSDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSASTL 237 Query: 235 AS--GCLHKTNRAVSVKMLGGGLLIEWHDNN 263 + L+K V V GG + H+ N Sbjct: 238 VTCMNGLNKIEEPVEVYNNGGKVRCVVHEKN 268 >gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519] gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii] Length = 281 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G GN IL ++ G + + + A D +M + S D + Sbjct: 3 FWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACE--KSTSCDIKMVY 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSISVDM 120 N DGS+ CGNG+RC +F+ + + SF E L+ + + + V+M Sbjct: 61 YNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ KLIP + + + I + FL + V +G PH + F EDD+ +L Sbjct: 121 GLPTLEPKLIPALTDYTEFINEEIVIE--DRKFLAS--AVLIGVPHLVIF-EDDISLQEL 175 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +G+ L ++ +F + +N++ ++ ++ ++T+ERG G T ACG+ +S + L Sbjct: 176 DYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIANKL 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V GG + IE ++MTG A+K +G++D Sbjct: 236 GLVNDKVKVSSPGGEVEIEIL-KEKLYMTGPAQKICDGRVD 275 >gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 284 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R D + + HF DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114 A I N DGS + CGNG RCV +L + + F ++ A E DG Sbjct: 63 EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAH-AVERLDGD 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +V MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V Sbjct: 122 RYAVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAV 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15] gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15] Length = 266 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 21/217 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123 N DGS CGNG+RC R++ +RM + F ET+ G + + SVDMG P Sbjct: 56 NKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVP 115 Query: 124 ILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + I A+S+ + IG + LFL G H + FVE+ Sbjct: 116 DDSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEI- 165 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGC 238 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VA Sbjct: 166 WKKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKET 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 226 GKISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260 >gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980] gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980] Length = 266 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 119/276 (43%), Gaps = 30/276 (10%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L + D ++ + D I N Sbjct: 5 KYNGCGNDFILLDYT--EDTNYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124 DGS CGNG+RC R++ +RM + F ET+ G + + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + I A+S+ + IG + LFL G H + FVE+ Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEV-W 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VA Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260 >gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118] Length = 334 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 26/289 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +T + + + T+ T D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN---RD 113 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L V KEN +D Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + SV++ + + +P F + DR V L+ F +++ NPH I FV Sbjct: 121 VPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ + L G L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271 A+ +A H T+ + V GG + + H DNN + +TG A Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285 >gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3] gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3] Length = 318 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 23/246 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114 D D RI N DGSE + CGNG+RC +++ R K ++ G+ +++ + Sbjct: 70 DYDADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISEMEFNE 129 Query: 115 S-------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNP-------FV 159 S + V MG P K IP+ D + ++ PVN L+ V Sbjct: 130 SNNEVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEALKLSV 189 Query: 160 VSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRT 214 ++GNPH + +++ + +L G + H F E +N+ + + + + + T Sbjct: 190 ANVGNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKEIQIIT 249 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKK 273 WERG G T ACG+ +SV L KT V + GG L IE +N N ++M G A+ Sbjct: 250 WERGAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMKGGAEI 309 Query: 274 EWEGKL 279 ++G L Sbjct: 310 SYDGIL 315 >gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] Length = 272 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 32/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSD---AINALSTDD--NTHFDQIMLIHDFQDA 58 + F K++G GN ++ID HD I D A AL D D ++ + A Sbjct: 3 IAFTKLQGNGNDFVLIDE---HDGEVIPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGIL---VAKENRDG 114 D +R++ D SE CGNG+RC+ ++ + ++S + ET GI+ + + Sbjct: 60 --DVRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEF 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + ++ M P + IP A + + + R F + + + G PHA+ FV++ Sbjct: 118 TATITMPAPAFERSAIPAAGNGEYKEEIRNFTV-----------YAANTGVPHAVVFVKE 166 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 + D+A+ G + HP F EG N++ +++ +RT+ERGV G T +CG+ A AS Sbjct: 167 -IGAVDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATAS 225 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L K V V+ GG L+I + + V M G A+ + G + Sbjct: 226 AAVAHHLGKVGDTVRVETKGGPLVIRFGET--VTMEGPAETVFSGVI 270 >gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] Length = 334 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 26/289 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D +T + + + T+ T D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN---RD 113 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L V KEN +D Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + SV++ + + +P F + DR V L+ F +++ NPH I FV Sbjct: 121 VPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ + L G L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271 A+ +A H T+ + V GG + + H DNN + +TG A Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285 >gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] Length = 269 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 28/277 (10%) Query: 3 SSMVDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 SS ++F KM G+GN ++I D+ G +D ++ A + DQ +I++ Q+ S Sbjct: 2 SSKINFVKMHGLGNDFVIINKKDLTGTYD-LSQLAKSMAKRHLGIGCDQ-FIIYEEQNDS 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + I N DGS + CGN RC+ + + +K T L+ + +ISV+ Sbjct: 60 YEMIIY--NIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + +P S DK+ +R+ I L+ V +GNPH + F + +L Sbjct: 118 VGGVSFNESWMP---SRDKIWEFAERYMID------LKETICVDVGNPHLVIFSKLELQ- 167 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 D G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 168 -DQKIVGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGL 225 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G +H V G LI +N ++ M G A Sbjct: 226 KLGFIHSPCEVV----FKHGSLIMKEENGNIIMQGPA 258 >gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] Length = 281 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 30/287 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + FAKM G GN ++ID + + + +F D ++ + + A D Sbjct: 3 IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGI--LVAKENRDG-SIS 117 A R N DGSE + CGNG+RC R++ S ET+ GI L +N +G + Sbjct: 61 AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120 Query: 118 VDMGEPILDWKLIPLARSF----DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMG P IP K+D F I + V+ G PHA+ FVED Sbjct: 121 VDMGTPKFSKDEIPTKEDVWGKEIKIDNRSFEI-----------YAVNTGVPHAVIFVED 169 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 + +D+ G + +F EG N++ + +RT+ERGV T +CG+ + A Sbjct: 170 --FDFDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAV 226 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L + V + GG L +E+ + ++ G A + +GK+ Sbjct: 227 AAVARKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKI 272 >gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246] gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246] Length = 270 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 30/277 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + +++ T L+ N + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + +P S DK+ +R+ I L+ V +GNPH + F L Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKEIICVDIGNPHVVIF--SKLEP 166 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 D G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGL 225 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G +H + V G L +N ++ M G A Sbjct: 226 KRGFIHSPSTIV----FKHGNLTMKEENGNIIMQGAA 258 >gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] Length = 266 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 118/276 (42%), Gaps = 30/276 (10%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L + D ++ + D I N Sbjct: 5 KYNGCGNDFILLDYT--EDTDYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124 DGS CGNG+RC R++ +RM + F ET+ G + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPD 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + I A+S+ + IG + LFL G H + FVE+ Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENSREEV-W 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VA Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260 >gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] Length = 280 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 88/293 (30%), Positives = 133/293 (45%), Gaps = 34/293 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQD 57 + + F KM G GN +VID +N + A H D ++ + Sbjct: 2 TKIKFTKMHGNGNDFIVIDE---FENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL-VAKENRDG 114 S+ +RI N DGSE + CGNG+RC V++ M ET GIL V DG Sbjct: 59 TSLH--MRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDG 116 Query: 115 S--ISVDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + V MG+P+ D K IP A +F + + VN G PHA+ F Sbjct: 117 KTLVKVSMGKPLFDPKKIPAAGLNNFINKPLHGYEVTAVN-----------TGVPHAVIF 165 Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 V DD+ DL + F +G+N++ + +L +RT+ERGV G T +CG+ Sbjct: 166 V-DDVNAVDLMKVAPEIRYDLKTFPKGINVNFVQREG-HNLRVRTYERGVEGETLSCGTG 223 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + AS + L T +V GG L I + ++ +M G A+ +EG++D+ Sbjct: 224 SVASAAVARYLGYTRDETTVYTAGGQLNISFV-SDIAYMEGPAETVYEGEIDV 275 >gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2] gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2] Length = 270 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 123/272 (45%), Gaps = 20/272 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVD 61 S ++F KM G+GN +V++ R + + D +T DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDD---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + +K T L+ + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +G+ + +P S DK+ + + + L+ V +GNPH + F L D Sbjct: 118 VGKVSFNEVWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQD 168 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 169 QKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKL 227 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 + +V G L ++ +N ++ M G A Sbjct: 228 GFIHSPSTVVFKYGSLTMK-EENGNIIMQGAA 258 >gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] Length = 333 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 23/268 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV K+ G N ++D + + + + + + TD D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ A FD + R V L+ F +++ NPH I FV Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFV 176 Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++L L G L + +P FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 177 SMEELNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 A+ +A H N +SV GG Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGG 264 >gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5] gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5] Length = 270 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 28/276 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + ++ T L+ N + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +G + +P +RD+ + + L+ V +GNPH + F L Sbjct: 118 VGSVSFNEAWMP--------NRDKVWEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQ 167 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236 D G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 168 DQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLK 226 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G +H + S + G L +N ++ M G A Sbjct: 227 RGFIH----SPSTIVFKHGNLTMKEENGNIIMQGAA 258 >gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 28/290 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D +++T + A + T+ T D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSI 116 + A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L V KE Sbjct: 61 KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEE----- 115 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170 + G P ++ P+ A F + +R V ++ F +++ NPH I F Sbjct: 116 NFAKGVPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINF 175 Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V ++ + L + G L +P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 176 VNQEQIAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEA 271 A+ +A H N + V GG + + H ++ + +TG A Sbjct: 236 MSATSLALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNA 285 >gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] Length = 283 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 132/284 (46%), Gaps = 15/284 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F KM G GN +V+D+R DA+ A D HF DQI+ I + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLR--DGTPPPDAVLAARLADR-HFGVGCDQILTIEAPRS 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115 A I N DGS + CGNG RCV +L F + A E D + Sbjct: 63 EDAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAET 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 SV MG P + IPLA F RD + + PV+ +R VSMGNPHA+ V + Sbjct: 123 YSVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVLEV-GRV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G LL ++ F VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 178 DAAPVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAV 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D V M+G A ++G+ Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGE 281 >gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] Length = 270 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 30/277 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58 Query: 62 AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 F +I N DGS + CGN RC+ + + ++ T L+ N + +ISV+ Sbjct: 59 -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117 Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + +P S DK+ +R+ I L+ V +GNPH + F L Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKETICVDIGNPHVVIF--SKLEP 166 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236 D G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGL 225 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G +H + V G L +N ++ M G A Sbjct: 226 KRGFIHSPSTIV----FKHGNLTMKEENGNIIMQGAA 258 >gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] Length = 266 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 83/276 (30%), Positives = 118/276 (42%), Gaps = 30/276 (10%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L + D ++ + D I N Sbjct: 5 KYNGCGNDFILLDYT--EDTDYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124 DGS CGNG+RC R++ +RM + F ET+ G + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPD 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + I A+S+ + IG + LFL G H + FVE+ Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEV-W 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VA Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260 >gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS] gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS] Length = 300 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 24/233 (10%) Query: 55 FQDA-SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKEN 111 FQ++ +VD +R+ N DGSE + CGNG+RC+ RF ++ + ET++G+ +V ++N Sbjct: 29 FQNSDNVDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQNLVFIETLKGVSRVVNEKN 88 Query: 112 RDGSISV---DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167 ++ ++ L+ K IP+ F+ + + P++ L + F VSM NPH Sbjct: 89 IHPGVATYKAELNTISLNTKDIPINVHFESLIKQ-----PLSTLSNKLTFTAVSMPNPHI 143 Query: 168 IFFVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + V D++ +L G + +F GVN++ +V ++ +RT+ERGVGLT +CG Sbjct: 144 VAMV-DNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEAAIYVRTYERGVGLTNSCG 202 Query: 227 SA-ACASVVASGCLHKT---NRAVSVKMLGGGLLIEWHDNN----HVFMTGEA 271 S + AS+VA CL + ++ + V GG + E NN VF++G A Sbjct: 203 SGMSSASLVA--CLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHHYSVFLSGNA 253 >gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] Length = 334 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 36/294 (12%) Query: 5 MVDFAKMEGIGNKILVID------------MRGCHDNITSDAINALSTDDNTHFDQIMLI 52 MV K+ G N ++D +R IT+ I L+ D ++ I Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADG-----VLAI 55 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN 111 + A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L V KEN Sbjct: 56 NKPVRKGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEN 115 Query: 112 ---RD-GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPH 166 +D + SV++ + + +P F + DR V L+ F +++ NPH Sbjct: 116 DFAKDVPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPH 171 Query: 167 AIFFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 I FV ++ + L G L +++P F++GVN++ A++ L +RT+ERGVG T A Sbjct: 172 LISFVNQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNA 231 Query: 225 CGSAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271 CG+ A+ +A H T+ + V GG + + H DNN + +TG A Sbjct: 232 CGTGMSATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285 >gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] Length = 305 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 124/295 (42%), Gaps = 34/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM+G GN + +D R H + +DA + F D ++ I Q + D Sbjct: 26 LEFTKMQGAGNDYIYLDCR--HSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDGD 83 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + + N DGSE CGNG+RCV +L + +K R R G G Sbjct: 84 ATMVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRAG 143 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPHAIFFV 171 + R F D +G L P V VSMGNPH + F Sbjct: 144 ----------MGR-FSTRAADLPAVGLGAGPLLEVPLVAAGQSWQVSCVSMGNPHCVVFC 192 Query: 172 -EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT----AACG 226 E LA +G + HP F +G+N+ + S SL WERG G T Sbjct: 193 NEAPPAGVQLADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGAC 252 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +AA V+ C +T + V++ GG L + ++ V +TG A+ ++G +++ Sbjct: 253 AAAVVGVLRGICPRET--PIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305 >gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] Length = 284 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 12/269 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K +G+GN LV+D + I AL +++ + +R Sbjct: 7 ITMIKYQGLGNDYLVLDPNKNRVQLQGKKI-ALLCQRGFGLGADGILYGPIEIDGKMGVR 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK--ENRDGSISVDMG 121 I N DGSE GNG+R ++L +K + F+ +T+ G + + NR V MG Sbjct: 66 IFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRVKMG 125 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ + F H +++GNPH I F+ + +LA Sbjct: 126 KASFISREIPVTGEVREVINESFTF----HNKEYKATCLTVGNPHCIIFM--NQVTPELA 179 Query: 182 -SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA+ L Sbjct: 180 KELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLG 239 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 V+V GG + I+ D++ ++MTG Sbjct: 240 LVENRVNVNQPGGMIQIDIKDDDTIYMTG 268 >gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039] gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039] Length = 266 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L T + D ++ + +D I N Sbjct: 5 KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123 DGS CGNG+RC R++ + M + F ET+ G + + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116 Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 I + P+ +++ D+ I LFL G H + FVE+ Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGDKVTI---TSLFL--------GTIHTVVFVENAREEV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VVA Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 225 TGKISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260 >gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 270 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 127/278 (45%), Gaps = 19/278 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M G GN +V+D+R D + + HF DQI+ I + A I Sbjct: 1 MHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGI 57 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + CGNG RCV +L + + F ++ + G +V MG P Sbjct: 58 WNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D IPLA F RD + + PV+ +R VSMGNPHA+ V + + G Sbjct: 118 FDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRVDAAPVERVG 172 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V + R Sbjct: 173 TLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVER 232 Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277 V V + GG L I W D+ V M+G A EW G Sbjct: 233 DVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 270 >gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] Length = 286 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 17/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62 MV+F K G+GN +V D + +T I L D N D I+++ + Sbjct: 1 MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIR-LICDRNRGVGSDGILVLEKINNQEFK- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-----ILVAKENRDGS 115 +RI N DGSE + GNG+R + +++ K F T+ G ++ + R + Sbjct: 59 -VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKT 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG+ IP+A ++ + I N L+ +S+GNPH +FFV D++ Sbjct: 118 IEVEMGKVTFRSSEIPVAGPEREVIDEELKI---NGEILKIT-CLSIGNPHCVFFV-DEI 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G + +P+F +N+ + +V +++R WERG G T A GS++CA+ A Sbjct: 173 DEEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + N V V M GG L I + + V + G ++ ++G+L Sbjct: 233 AYRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGEL 276 >gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] Length = 287 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/302 (28%), Positives = 134/302 (44%), Gaps = 47/302 (15%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDF 55 +++ F KM G GN +V+D R I+ + A A + D ++LI + Sbjct: 3 VENERTRFLKMTGSGNDFIVLDNRA--QGISPEQGRELARLACRRKLSVGADGLILIEN- 59 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRD 113 D VD R N DGSE + CGNG RC RF + + + +F T+ GI+ A E ++ Sbjct: 60 -DPEVDFRWRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEA-EIKE 117 Query: 114 GSISVDMGEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + M P D + RSF R H ++ G PH + F Sbjct: 118 PRVKIRMTPPHGLEPDLNVEAEQRSF------RLHF-------------INTGVPHVVCF 158 Query: 171 VEDD--LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACG 226 +E+D L ++ +G LL H F G N++ A V + +RT+ERGV T ACG Sbjct: 159 LENDRALEEMNVFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACG 218 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN---------NHVFMTGEAKKEWEG 277 + + AS + + V V+ G L + DN + V++ G+AK +E Sbjct: 219 TGSIASALVAAAKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEA 278 Query: 278 KL 279 +L Sbjct: 279 EL 280 >gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 268 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120 +RI N DGS+ + GNG+R + R+L + + F T GI+ + +G IS+ M Sbjct: 57 VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVTCQVLDNGQRISIAM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +D + P VSMGNPH + FV D Sbjct: 117 GQAAFANTAAFTV----DVDGTPLQLHP-----------VSMGNPHCVVFV-DQPTETLA 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ + +F + N+ RV ++L+++ WERGVG T + G+++CA+ S L Sbjct: 161 RQLGPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V M GG ++IE D+ HV M G + LD Sbjct: 221 LVGPRVAVNMAGGVIMIELDDDYHVLMQGPVCRVGLYSLD 260 >gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 332 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 38/298 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINA---LSTDDNTHF----DQIMLIHD 54 + + F K+ G N ++D +NI+S DA A + D TH D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEE--ENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSK 59 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRD 113 +A ++++N DGS CGNG+R V R+L + ET++ IL V K + Sbjct: 60 SSEAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSL 119 Query: 114 G----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168 G + V++ + K +P+ +K+ V L F VS+ NPH I Sbjct: 120 GFDIPTYQVEISPVNFNLKSLPMNLPVEKLINQV-----VPELDAELAFSAVSVPNPHLI 174 Query: 169 FFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FV+ + D LAS+ N ++P F +GVN+S + S +++ +RT+ERGVG T A Sbjct: 175 AFVDQAVLDSDKQEKLASYLN--GENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNA 232 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CG+A A + L + + + + ++D V +T AK++ EG+L ++ Sbjct: 233 CGTAMSACSLIKKMLDRDVLEIPLNV--------YNDGGRVQVT--AKEDAEGELSLQ 280 >gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] Length = 266 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L T + D ++ + +D I N Sbjct: 5 KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123 DGS CGNG+RC R++ + M + F ET+ G + + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116 Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 I + P+ +++ D+ I LFL G H + FVE+ Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGDKVTI---TSLFL--------GTIHTVVFVENAREEV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VVA Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260 >gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304] gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304] Length = 280 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 45/296 (15%) Query: 6 VDFAKMEGIGNKILVID---------------MRG-CHDNITSDAINALSTDDNTHFDQI 49 + F KM G GN ++ID +R CH N A D Sbjct: 3 IAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGA------------DGA 50 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVA 108 + + Q A D R N DGSE CGNG+RC R++ + ET+ GIL Sbjct: 51 LFVQPSQKA--DVRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILEL 108 Query: 109 KENRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + R+ + VDMG+P + IP A++ D + H G ++ N G PH Sbjct: 109 EVKRENGWWVKVDMGKPKFGREEIP-AKT-DVWGYEVEHDGRKFRIYAAN-----TGVPH 161 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225 FV D +D+ + +F EG N++ A+V +++ +RT+ERGV G T +C Sbjct: 162 VAVFV--DSLDFDIVPLARKIRYSEIFPEGTNVNFAKVDG-DTITVRTYERGVEGETLSC 218 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G+ + A + L T V V GG L IE ++ +MTG A + ++G L + Sbjct: 219 GTGSVAVAAIANRLGLTGSKVDVVTKGGLLKIELTEDT-AYMTGGASRVFDGILRL 273 >gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] Length = 266 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 116/276 (42%), Gaps = 27/276 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+I+ A S + + D I + D S F+ Sbjct: 1 MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLERRADGSF--FL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDG---SISVDM 120 R+ N DGSE + GNG RCV +L T G+ + + DG I M Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179 G P + + I L +G V +V++GNPH + FV+ DD + Sbjct: 119 GVPRVMRRAIELE-----------GVGVVEGA------MVNVGNPHYVLFVDTDDFGSHG 161 Query: 180 LA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G +A P+F G N+ +V S + ++ R +ERG G T + G+ CAS A+ Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAK 272 L R+++ GG + W N M TG A+ Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAE 257 >gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8] gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8] Length = 275 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 18/223 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGIL---VAKENRDGSI 116 D +RI+ D SE + CGNG+RC+ ++ +++ T +T G L V E + ++ Sbjct: 61 DIRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++ MGEP K IP + ++ F + VN G PHA+ DDL Sbjct: 121 TIGMGEPKFKRKDIPATGKGEYHEQIGGFEVHAVN-----------TGVPHAVILT-DDL 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 DLA+ + HP F G N++ + T +S+ +RT+ERGV T +CG+ A AS Sbjct: 169 GSIDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAA 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L N V V+ GG L I + M G A + G Sbjct: 229 VVHHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSG 271 >gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 151 Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%) Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 VSMGNPHAI ++ DD+ H D+ G H F + VN V ++ +R WERG Sbjct: 24 VSMGNPHAIVYM-DDIDHLDIEKIGPAFENHVAFPDRVNTEFVEVIDEHTVKMRVWERGS 82 Query: 220 GLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWE 276 G T ACG+ ACA VAS + V+VK+LGG L I W+ N V+MTG A ++ Sbjct: 83 GETLACGTGACAVAVASVLNGHVDGDSPVTVKLLGGDLQIFWNRQENLVYMTGPAATVFD 142 Query: 277 GKLDI 281 G++D+ Sbjct: 143 GEIDV 147 >gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] Length = 286 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 28/290 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF--DQIMLIHDF 55 ++ ++ F K++G GN ++ID + D + A L D D ++ + Sbjct: 11 EAFVIPFVKIQGNGNDFILIDE--TDGEVIPDPMKAEFAALYCDRRFGIGADGVLFLSKS 68 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----E 110 A++ +RI+ D SE + CGNG+RC+V++ + ++ ET+ G L + E Sbjct: 69 DKANIR--MRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNE 126 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 N + +DMG+ + + IP + + + + + + V+ G PHA+ F Sbjct: 127 NNEFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIF 176 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 V D + + + H F G N++ +T + + +RT+ERGV T +CG+ + Sbjct: 177 V-DSVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGS 235 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AS + L KT V V +GG L+I + + + FM G A + G++ Sbjct: 236 TASAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284 >gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis] Length = 198 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 11/202 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ D +T FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MG Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 120 EPDFEPQTVPFRAA---KAQKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIAR 203 G +L H F G ++ R Sbjct: 174 LLGPVLENHERFLSGQISALCR 195 >gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO] gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082] gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082] Length = 266 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L T + D ++ + +D I N Sbjct: 5 KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDIDGLIAV------KIDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123 DGS CGNG+RC R++ + M + F ET+ G + + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116 Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 I + P+ +++ ++ I LFL G H + FVE+ Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGEKVTI---TSLFL--------GTIHTVVFVENAREEV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VVA Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260 >gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 335 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 21/219 (9%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122 + ++N DGS + CGNG+R V R+L+ + + +F T + VA++ + + G Sbjct: 65 MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119 Query: 123 PILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 P ++ P++ + F + DR + P H L+ +++ NPH I FV + Sbjct: 120 PAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSPEV 178 Query: 175 LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ A+ Sbjct: 179 LAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSATT 238 Query: 234 VASGCLHKTNRA---VSVKMLGGGLL--IEWHDNNHVFM 267 +A H A V+ GG++ I HD H ++ Sbjct: 239 LAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWI 277 >gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] Length = 274 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 122/290 (42%), Gaps = 38/290 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA------- 58 + F K+ G GN ++ID A + D HF + F Sbjct: 3 IPFVKLHGNGNDFILID---------EYAGEKIPDDMKGHFAAVYCDRKFGIGGDGVLFL 53 Query: 59 --SVDAF-IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----E 110 S D +R+ D SE + CGNG+RC+ ++ + + T +T+ G ++ + E Sbjct: 54 LKSNDGIRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDE 113 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + D V+M PI + IP D FH + F V+ G PHA+ F Sbjct: 114 DGDFMAEVEMTPPIYESPGIPAKGKGD------FH----EIINGYEVFAVNTGVPHAVIF 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 V D L DL + F G N++ +T S+ +RT+ERGV T +CG+ A Sbjct: 164 VRD-LDSLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AS + L KT V V+ +GG L I D FM G A + G L Sbjct: 223 TASAAIAYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGML 270 >gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 285 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 8/275 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +GN LVI+ + +T + I + + +L+ +RI Sbjct: 3 FYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124 N DGSE + GNG+R R+L + K F+ ET GI+ A ++ ++ V+MG+ Sbjct: 63 NPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMGKVS 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP+ ++ +++ + F ++GNPH + + DD+ +FG Sbjct: 123 FWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVARNFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + +P+F N+ +V ++ + WERG G T A GS++ A+ + L + Sbjct: 178 PIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGLCDS 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 238 KIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 272 >gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 280 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 31/287 (10%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D R G + + A N + D ML+ + A D Sbjct: 6 IPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNIA--DF 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DGSE + CGNG RC+ RF +FET+ GI A+ N++ SV + Sbjct: 64 KMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQN---SVKVK 120 Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD- 179 P + + + L + ++ +H G V G PH ++FVE+ + D Sbjct: 121 FPDVPLQALKLNQPYEWDGPSGVYHYGVV-------------GVPHTVWFVENVIAIADD 167 Query: 180 -LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 L +G ++ F G N++ ++L +RT+ERGV T ACGS + A+ + + Sbjct: 168 QLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAAAIIA 227 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 G L + V++ GG L I H ++ V++ G + EG L Sbjct: 228 GILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274 >gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii] gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii] Length = 289 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 131/283 (46%), Gaps = 16/283 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F + G+GN +V+D +T I + D + ++ D +RI Sbjct: 5 FFRGHGLGNDYVVMDPTELTFTLTPGKIRGIC-DRHWGLGSDGILALVPSKKADFGLRIY 63 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSISVDM 120 N DGSE + GNG+R R+L T + K+++FT ET G++ + + + +V+M Sbjct: 64 NPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVEM 123 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE--DDLYH 177 G +P S D++ + P+ F VS+GNPH + F + + Sbjct: 124 GRATFQPSALPCTLSVDELIQQ-----PIEAAGRALQFTGVSVGNPHCVIFKQAGETWTR 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L + G +L HP+F + N+ +A T + + + WERG G T A GS++CA+ A+ Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L V+VKM GG L IE + + M G + G L Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGALS 281 >gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] Length = 275 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 25/288 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F KM+G GN + I+ DN D + HF D ++++ + A Sbjct: 1 MNFYKMQGAGNDFVFIED---FDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELAH-- 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRD-GS 115 A + IIN DGS CGN +RC +++ F+ ET I+ I + EN + Sbjct: 56 ARMVIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKY 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG P + IPL ++++ I + + + +G PH I F D Sbjct: 116 VRVYMGNPSYNGCDIPLNNLESLIEKE---IAVDDKKYKMTTLL--LGVPHTIIFESD-- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 Y++ G+ + K +FSEG N++ ++ + + TWERG G T ACG+ ASVV Sbjct: 169 REYNVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVV 228 Query: 236 SGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L N + + VK GG L+IE + V+M G A+ ++G+L + Sbjct: 229 AKKLGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275 >gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654] gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654] Length = 156 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 14/151 (9%) Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178 MG P W IPL++ D HL L +P V MGNPHA+FFV DD+ Sbjct: 1 MGHPQTMWDEIPLSKPMD-----------TAHLPLDCDPMAVGMGNPHAVFFV-DDVGAV 48 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ + G + P+F + N+ A V S + + +R WERG G+T ACGS ACA+ VA+ Sbjct: 49 DVEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAE 108 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 T R V +++ GG L ++W D+ V+MTG Sbjct: 109 RGLTERKVRMEVDGGWLTLDWRDDG-VWMTG 138 >gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] Length = 266 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 82/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68 K G GN +++D D S +L T + D ++ + +D I N Sbjct: 5 KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123 DGS CGNG+RC R++ + M + F ET+ G + + SVDMG P Sbjct: 57 KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116 Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 I + P+ +++ ++ I LFL G H + FVE+ Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGEKVTI---TSLFL--------GTIHTVVFVENAREEV 165 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS VVA Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V V + G L+I D + M G A EW Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260 >gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] Length = 333 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 25/269 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56 MV K+ G N ++D +T + + + TD D ++++ H + Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 SV A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSV-AQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED--- 116 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFF 170 + G P ++ P+ A FD + +R V L+ F +++ NPH I F Sbjct: 117 -LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISF 175 Query: 171 VE-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V ++L L G L + + FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 176 VSMEELNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTG 235 Query: 229 ACASVVASGCLHKT----NRAVSVKMLGG 253 A+ +A H N +SV GG Sbjct: 236 MSATSLALALTHPDAASFNEPISVYNPGG 264 >gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang] gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang] Length = 335 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 21/219 (9%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122 + ++N DGS + CGNG+R V R+L+ + + +F T + VA++ + + G Sbjct: 65 MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119 Query: 123 PILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 P ++ P++ + F + DR + P H L+ +++ NPH I FV + Sbjct: 120 PAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSPEV 178 Query: 175 LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L DL G +L AK+P F EGVN++ A ++L RT+ERGVG T ACG+ A+ Sbjct: 179 LAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMSATT 238 Query: 234 VASGCLHKTNRA---VSVKMLGGGLL--IEWHDNNHVFM 267 +A H A V+ GG++ I HD H ++ Sbjct: 239 LAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWI 277 >gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500] Length = 343 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ V S + R W Sbjct: 212 NATLVSMGNPHCVVHLEN-VQDFPMDYYGEVIETHPIFPDKTNVEFVEVISSNQVRARVW 270 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274 +RG G T ACG+ ACA VVA KT+R +V M GG L +EW +++ +V+ +G + Sbjct: 271 QRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHMDGGSLEVEWRNEDEYVYHSGPSTTT 330 Query: 275 WEGKL 279 ++G + Sbjct: 331 FQGTV 335 >gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] Length = 260 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 132/283 (46%), Gaps = 33/283 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K G+GN ++ + D + + + D ++++ + + + ++ Sbjct: 1 MEFEKYSGLGNDFIITE----KDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGI----LVAKENRDGSISV 118 N DGS CGNG+RC +L + K +T+ GI ++ E + +SV Sbjct: 54 FYNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSV 113 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DM I ++ ++ + +DR +I + F G H + FV+ + + Sbjct: 114 DMNAAINTTEI----KTIEAIDRTFKYI----YTF--------TGTDHVVIFVDKEELNE 157 Query: 179 DLAS-FG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D + +G N+ +F +G N++ V + E +D+ T+ERG GLT ACG+ A A S Sbjct: 158 DFVTKYGKNIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVS 217 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L KT V V +LGG L IE D +FM G ++ ++G + Sbjct: 218 NMLGKTGNKVKVNLLGGSLEIEIKDGT-IFMNGISEMIYKGSV 259 >gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] Length = 327 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 24/274 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID T + AI D D I+ + Sbjct: 3 IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFT--MKSDKA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115 DA +R+ N DGSE CGNG+RCV R++ K ET++ L ++ D + Sbjct: 61 DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 V++ + +PL + + + ++ +N L F +++ NPH I D Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEK-----INSLSDSLHFTALAVPNPHLIAVCSKD 175 Query: 175 LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DL + P +F +GVN+S + ES+ +RT+ERGVG T ACG+A AS Sbjct: 176 DIQSDLQKNISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSAS 235 Query: 233 VVASGCLH---KTNRAVSVKMLGGGLLIEWHDNN 263 + S CL K R V V GG + H++N Sbjct: 236 TLVS-CLQGMNKLERPVDVYNNGGKVQCIAHESN 268 >gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] Length = 330 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 26/258 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTH--FDQIMLIH 53 M+ S ++ K+ G GN ++D + +T + + L+ D H D ++ + Sbjct: 1 MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + + D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ Sbjct: 61 AGHEGT-DGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADK 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNP 165 + V P D ++ P+ SFD D H+G + L F V++ NP Sbjct: 120 LAEKV----PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSKAIKFSAVAVPNP 172 Query: 166 HAIFFVE-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H I FV+ + L +L + L +P+F +GVN+S + + +RT+ERGVG T Sbjct: 173 HLIAFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFT 232 Query: 223 AACGSAACASVVASGCLH 240 ACG+A AS + LH Sbjct: 233 NACGTAMSASSLMYVLLH 250 >gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 335 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 20/194 (10%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122 + ++N DGS + CGNG+R V R+L+ + + +F T + VA++ + + G Sbjct: 65 MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV-E 172 P ++ P+ SF D ++G P H L+ +++ NPH I FV Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSP 176 Query: 173 DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 ++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ A Sbjct: 177 EELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236 Query: 232 SVVASGCLHKTNRA 245 + +A H A Sbjct: 237 TTLAFILTHPEEAA 250 >gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] Length = 272 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST----DDNTHFDQIMLIHDFQDASVD 61 V F KM G GN ++ID R + T D N ++ + D ++LI VD Sbjct: 4 VSFWKMSGSGNDFIIIDNRTLFIDKT-DFRNTVAKICKRSMSVGADGVILIE--PSNKVD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGS + CGNG RC RF + K FE++ GI+ A+ S+ V + Sbjct: 61 FKWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKL 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P D KL +D P+ L L F V+ G PH V DD+Y++D+ Sbjct: 121 TRP-SDLKL--------NIDI------PLTDLTLNGSF-VNTGVPHIAIEV-DDIYNFDV 163 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVAS 236 +G + H +FS +G N++ ++ +++ +RT+ERGV L GSAA A ++ Sbjct: 164 KKYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILHK 223 Query: 237 GCLHKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + K+ V + GG L+I +++V++ GEA+ ++G L ++ K+ Sbjct: 224 KSILKS--PVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272 >gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] Length = 267 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 47/293 (16%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62 F KME GN ++ D R I INAL+ + HF D I+ + A + Sbjct: 3 FWKMEAAGNDFVIFDGR----EIEIKDINALAKKLCDRHFGVGADGILFCQESDTADIK- 57 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS- 115 + N DGS + CGNG+RC+ RF+ + ++ ET G+ L EN S Sbjct: 58 -MNYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHISQ 116 Query: 116 ISVDMGEPILDWK-------LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + V+MG+ +W+ L RSFD F R V++G PH Sbjct: 117 VKVEMGKA--EWEKGFQEETLEIEGRSFD---------------FYR----VTVGVPHIA 155 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V++ + +L +G +L KHP F N++ +V + + + ++TWERG G T C + Sbjct: 156 ILVDEFMKDEELNYWGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATG 215 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V L K V GG + ++ D + V + G+A + G +D+ Sbjct: 216 CSSCGVILQRLQKIKGEVHFYTEGGDVFVQTQD-DFVTIYGKANLIFTGDMDV 267 >gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 285 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 10/276 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +GN LVI+ + ++T + I + + +L+ +RI Sbjct: 3 FYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124 N DGSE + GNG+R R+L + F+ ET+ G++ A ++ ++ V+MG+ Sbjct: 63 NPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMGKVS 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA-SF 183 + IP+ ++ +++ + F ++GNPH + ++D + D+A +F Sbjct: 123 FWSRDIPVVGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILLDD--INADVARNF 176 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F N+ +V ++ + WERG G T A GS++ A+ + L + Sbjct: 177 GPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGLCD 236 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V+M GG +LI+ D+ H+ MTG K +G+L Sbjct: 237 SEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGEL 272 >gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum] Length = 381 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 16/139 (11%) Query: 159 VVSMGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 +VSMGNPH + F++D D+ D++ G LAKH MF + N+ T Sbjct: 243 LVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTKA 302 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNH- 264 R WERG G T ACG+ ACA VA+ + K+ + +S+ M GG LLI+W+ N + Sbjct: 303 NHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANENF 362 Query: 265 --VFMTGEAKKEWEGKLDI 281 VF TG A + + I Sbjct: 363 GKVFKTGPATSVFSSVIKI 381 Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 DQ++++ D +A D + I N DGS+ CGNG+RC +++ Sbjct: 71 DQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYI 112 >gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] Length = 270 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 143/291 (49%), Gaps = 39/291 (13%) Query: 8 FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60 F KM+ GN + +D C + I + A+ D HF D ++LI D D + Sbjct: 3 FIKMQAAGNDYVYVD---CFKEKIENPGEIAIKVSDR-HFGVGSDGLILICPSDIADVKM 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG--- 114 D + N DGS CGNG RCV ++ +K K+FT ET GI + E +DG Sbjct: 59 DMY----NADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGIKYIEIEEKDGVAH 114 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 I+V+MG+ + + P S + +++ IG V +GNPHA+++VE Sbjct: 115 YINVNMGKAFITSEF-PEKISINGEEKE--FIG------------VDVGNPHAVYYVETL 159 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+L +L + G +H F + VN V +++ +R WERG G T ACG+ ACA+ Sbjct: 160 DELKGMNLEAVGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAA 219 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A+ V V +LGG L I N+ ++M G A+ + G+++ ++ Sbjct: 220 AFATMKKGLCENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269 >gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] Length = 270 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/276 (33%), Positives = 129/276 (46%), Gaps = 17/276 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66 M G GN +V+D+R D + + HF DQI+ I + A I Sbjct: 1 MHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGI 57 Query: 67 INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123 N DGS + CGNG RCV +L + + F ++ A E DG +V MG P Sbjct: 58 WNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGDRYAVAMGVP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IPLA F RD + + PV+ +R VSMGNPHA+ V + + Sbjct: 117 QFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRVDAAPVERV 171 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ + Sbjct: 172 GALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVE 231 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L I W D V M+G A ++G+ Sbjct: 232 RDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 267 >gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] Length = 309 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 47/315 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRG-------------CHDNITSDA--INALSTDDNTH 45 M + V F K G GN LV+D C D +A +++T Sbjct: 1 MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60 Query: 46 ---FDQIMLI---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 D ++ + F V + ++ DGS CGNG R V + R + F Sbjct: 61 RRGADGVLFLSVEERFNPTRV--VMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMI 118 Query: 100 ETIRGILVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 +T G A N D + +++MGEP D +PLAR +D PV L + Sbjct: 119 DTQAGTRRASVNADATAATIEMGEPTFDPARVPLARDEPLIDE------PVEGLTV---T 169 Query: 159 VVSMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--- 209 V+ G PHA+ FV+ D + DL + + +F EG N+++A V S Sbjct: 170 AVNTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDG 229 Query: 210 ---LDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNH 264 +D RT+ERGV G T +CG+ A A V A+ L + +V + GG L + D H Sbjct: 230 PALIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGH 289 Query: 265 VFMTGEAKKEWEGKL 279 +TG +E+EG L Sbjct: 290 ATLTGPVAREYEGTL 304 >gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius CECT 5713] Length = 325 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 18/192 (9%) Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ + V Sbjct: 61 TDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV- 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNPHAIFFV 171 P D ++ P+ SFD D H+G + L F V++ NPH I FV Sbjct: 120 ---PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFV 173 Query: 172 E-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + + L +L + L +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 174 DHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTA 233 Query: 229 ACASVVASGCLH 240 AS + LH Sbjct: 234 MSASSLMYVLLH 245 >gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 325 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 18/192 (9%) Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ + V Sbjct: 61 TDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV- 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNPHAIFFV 171 P D ++ P+ SFD D H+G + L F V++ NPH I FV Sbjct: 120 ---PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFV 173 Query: 172 E-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + + L +L + L +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 174 DHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTA 233 Query: 229 ACASVVASGCLH 240 AS + LH Sbjct: 234 MSASSLMYVLLH 245 >gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] Length = 335 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 20/194 (10%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122 + ++N DGS + CGNG+R V R+L+ + + +F T + VA++ + + G Sbjct: 65 MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFVED 173 P ++ P+ SF D ++G P H L+ +++ NPH I FV Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSP 176 Query: 174 D-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ A Sbjct: 177 EVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236 Query: 232 SVVASGCLHKTNRA 245 + +A H A Sbjct: 237 TTLAFILTHPEEAA 250 >gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23] gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23] gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W] gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei BD-II] Length = 335 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 20/194 (10%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122 + ++N DGS + CGNG+R V R+L+ + + +F T + VA++ + + G Sbjct: 65 MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFVED 173 P ++ P+ SF D ++G P H L+ +++ NPH I FV Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTFLPAIHPSLKF-TAIAVPNPHLIAFVSP 176 Query: 174 D-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ A Sbjct: 177 EVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236 Query: 232 SVVASGCLHKTNRA 245 + +A H A Sbjct: 237 TTLAFILTHPEEAA 250 >gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514] gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514] Length = 269 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 31/288 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G GN +++D R + + A+ D IML+ D Sbjct: 2 VLEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWA 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG RC RF+ S FTFET GI+ A + +++ + + Sbjct: 62 WDFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQGE-RVTIGLTK 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P R ++ +G P++ L + G PHA+ FV D L Sbjct: 121 P----------RDLRLNEQVTLSVGAQPIHSL--------NTGVPHAVLFVPDADKAMVL 162 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 S G + +H F+ +G N++ + ++ +RT+ERGV G T ACG+ AS + S Sbjct: 163 -SLGQEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAE 221 Query: 239 LHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281 L+ + V++ GG LL + + +N F +TG A +EGK+ I Sbjct: 222 LNGFKSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269 >gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum] Length = 285 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 133/301 (44%), Gaps = 56/301 (18%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64 DF K G+GN +V+ + G +T + L D N D I+L+ + + Sbjct: 4 DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLC-DRNYGIGSDGILLL---GQPTPPFGL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117 RI N DGSE + GNG+R +FL K SF +T G + V + R ++ Sbjct: 59 RIFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------------VS 161 VDMG SF+ D V L NP + VS Sbjct: 119 VDMGR-----------YSFNPSD--------VGILGRSNPMIEEVLRLEDGTEIRGSAVS 159 Query: 162 MGNPHAIFFVE---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 +GNPH +FFVE +D H G ++ + +F + +N + RV +++R WERG Sbjct: 160 VGNPHFVFFVEKIDEDFIHEK----GRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERG 215 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T A GS++CA+ + L + V V M GG L+IE +N+ + M G ++ G Sbjct: 216 AGYTLASGSSSCAAATIAVHLGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGH 275 Query: 279 L 279 L Sbjct: 276 L 276 >gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] Length = 264 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 32/285 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +VID R N+ + ++A+ T D ++LI + A D + Sbjct: 3 IEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DG CGNG RC V F + R + FE G A+ S+ + M Sbjct: 61 NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K RD H G + F V G+PHAI +V D+L D+ Sbjct: 121 PP--------------KNFRDDLHAGAWSCHF------VDTGSPHAIAYV-DNLDQMDVF 159 Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + G + + +F EG N++ VT+ ++L +RT+ERGV T ACG+ A+ + S L Sbjct: 160 TEGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRL 219 Query: 240 HK-TNRAVSVKMLGG-GLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 K + V V + G L++ ++D + +++ G A+ ++G + + Sbjct: 220 GKVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264 >gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] Length = 514 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 380 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498 Query: 275 WEGKL 279 +EG + Sbjct: 499 FEGSI 503 >gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism HF4000_APKG3D20] Length = 280 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 8/279 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH-DFQDASVDAFI 64 ++F K +GN LV+D R +++ +I + D N ++H F D + Sbjct: 1 MNFDKYHALGNDYLVLDPRERFESLDERSIIRI-CDRNFGLGSDGILHGPFSSEKADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI+N DGSE + GNG+R R+L + K + FT ET+ GI+ + + D + I V+MG Sbjct: 60 RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +IP+ + + I + + ++GNPH + + D++ + Sbjct: 120 QVSFRSDVIPVKVEGEAREVLNEPIEAAGNSL--KYYAATIGNPHCVIPM-DEVSESFVR 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HPMF N+ + ++ +L + WERG G T A GS++ A+ + + Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + ++V M GG + + D +V M G A + LD Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLD 275 >gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] Length = 1411 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 40/316 (12%) Query: 2 QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59 + + F KM+ GN +VI+ M N A+ + D ++LI + + A Sbjct: 1100 EKQKITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA- 1158 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL--------TSRMKRKS-----FTFET---IR 103 DA +R N DG+E + GN +RCV ++L + +K+ T ET ++ Sbjct: 1159 -DAKMRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVK 1217 Query: 104 GILVAKEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-----P 157 +++ K+N + S++VDMG+P+ + IP + + F+ N + + P Sbjct: 1218 TLVLYKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAP 1277 Query: 158 FVVS----------MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 +V+ +GNPH + F + + G L H +F E N RV Sbjct: 1278 LIVAGNEYRVTCINVGNPHCVVF-SKFVDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGP 1336 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHV 265 L +RTWERG G T ACG+ ACA+ VAS N+ ++VK+ GG L++++ V Sbjct: 1337 NELKMRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYTGET-V 1395 Query: 266 FMTGEAKKEWEGKLDI 281 +TG K ++G+++I Sbjct: 1396 LLTGNTKMCYQGEVEI 1411 >gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] Length = 234 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 105/238 (44%), Gaps = 37/238 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F KMEG+GN + ++ C + D T + HF D ++ I ++ D Sbjct: 24 FTKMEGLGNDYIYLN---CLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG--DFT 78 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117 + + N DGS CGNG+RCV +++ + ++ T +T G + + G ++ Sbjct: 79 MEMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVREVT 138 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L PL + + + V MGNPH + F + Sbjct: 139 VDMGEPKLS---PPLEVQGETV------------------YPVDMGNPHGVIFCPEP-EE 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G L + P F N+ V + + L +R WERG G T ACG+ ACA + A Sbjct: 177 IDLEVRGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLAA 234 >gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] Length = 479 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + L +G ++ HP+F + N+ V + + L +R W Sbjct: 347 NSTLVSMGNPHCVLHLEN-VEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRDLLRVRVW 405 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ A Sbjct: 406 QRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFISCPAITV 465 Query: 275 WEGKL 279 ++G + Sbjct: 466 FQGTI 470 >gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785] gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785] Length = 333 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D ++ I+ A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L Sbjct: 50 DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANL 109 Query: 107 -------VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 +AKE + + +V++ + +P F + +R + ++ F Sbjct: 110 RVRKHDNLAKEVK--AFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFT 163 Query: 160 -VSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWE 216 +++ NPH I F++ + + L G L +P F +GVN++ A++ L +RT+E Sbjct: 164 SIAVPNPHLISFMDQNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYE 223 Query: 217 RGVGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266 RGVG T ACG+ A+ +A CL N+++ V GG + H NH + Sbjct: 224 RGVGFTNACGTGMSATSLAF-CLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTY 277 >gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026] Length = 333 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 18/233 (7%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D ++ I+ A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L Sbjct: 50 DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANL 109 Query: 107 VAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-V 160 +++ + + +V++ + +P F + +R + ++ F + Sbjct: 110 RVRKHDNLAKGVKAFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFTSI 165 Query: 161 SMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 ++ NPH I F++ + + L G L +P F +GVN++ A++ L +RT+ERG Sbjct: 166 AVPNPHLISFMDQNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERG 225 Query: 219 VGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266 VG T ACG+ A+ +A CL N++++V GG + H NH + Sbjct: 226 VGFTNACGTGMSATSLAF-CLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTY 277 >gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] Length = 262 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 42/290 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHF----DQIMLIHDFQDA 58 ++ F KM GN +++D + D + HF D ++L+ + Sbjct: 2 LIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLL--MPNE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 S DA + I N DGS + CG+ +RCV L + +K F +T G+ N D +I+V Sbjct: 60 SCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTITV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDL 175 ++G P + L ++ MD F + +V +GN H I +V +DD Sbjct: 120 NLGMPSM------LKSAYQVMD------------FTGD--LVEIGNQHFIVWVNSLKDDP 159 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233 + +G+ + H F++ VN+ A + + ++ ++ WE+G G T ACG+ A A+V Sbjct: 160 H----LQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFS 215 Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +A G L N V V M GG + I N ++ ++GE + ++G + K Sbjct: 216 GIAKGLL---NNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYNWK 261 >gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1] gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1] Length = 330 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 31/297 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID N + AI D I+ + D Sbjct: 3 INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLD--SDRC 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI---- 116 D +R+ N DGSE CGNG+RCV R++T + T ET++ L K + + SI Sbjct: 61 DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADL--KISSEPSIFAEI 118 Query: 117 ---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 V++ + + K +P+ +D+ V + F V++ NPH I VE Sbjct: 119 PTFKVEISPVLFELKHLPM-----NIDKQTLIDEKVPEISAALTFTAVAVPNPHLISIVE 173 Query: 173 DD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ L + + ++ + +F +GVN+S + + + +RT+ERGVG T ACG+A Sbjct: 174 NEHILSNEQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMS 233 Query: 231 ASVVASGCLHKTN---RAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDI 281 AS + + CL N + + V GG + + H N+ F + G A KLD+ Sbjct: 234 ASTLVT-CLSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDL 289 >gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] Length = 279 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 49/296 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-----DASV 60 ++F KM G GN ++ID ++ DN + + ++ D + D ++ Sbjct: 1 MEFVKMHGNGNDFVLID-----------EFESVKVPDNRKSEFVRVVCDRRFGVGGDGAI 49 Query: 61 --------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE 110 DA N DGS + CGNG+RC R++ R K ET+ G+L Sbjct: 50 FVQKSDIADAKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDV 109 Query: 111 NRDGS--ISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 D I V+MG P K +P + ++D +F + + V+ G Sbjct: 110 WFDEMWWIRVNMGRPKFG-KDVPALKDVWGEVFEIDGRKFEV-----------YAVNTGV 157 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223 PHA+ + D + +D + +F EG N++ A+V S S+ +RT+ERGV T Sbjct: 158 PHAV--IFVDDFDFDFYKVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETL 215 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +CG+ +CA V L ++ V V+ GG L IE +D ++M G A K +EG+L Sbjct: 216 SCGTGSCAVAVVGNRLGILDKVVEVQTKGGILKIEVND--EIYMNGTAAKVFEGRL 269 >gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e] gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561] gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e] gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] Length = 329 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 32/295 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56 + + F K+ G N ++D G SDA A + D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 D+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 120 GFDI--PTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T ACG+ Sbjct: 178 DQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGT 235 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A A + L K + + ++D V +T AKK+ G + ++ Sbjct: 236 AMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGDISLQ 280 >gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum] Length = 351 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 217 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335 Query: 275 WEGKL 279 +EG + Sbjct: 336 FEGSI 340 >gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 268 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 19/213 (8%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120 ++I+N DGSE + GNG+R + R+L + + + F T G + + DG IS+ M Sbjct: 57 VQILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVRCQVLDDGRRISIAM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G R ++D R H+ +VSMGNPH + FV D Sbjct: 117 GMATFPEN----ERHSMEVDGMRLHLN-----------LVSMGNPHCVVFV-DQTTEALA 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + + +F N+ V +L ++ WERGVG T + G+++CA+ S L Sbjct: 161 RKLGPTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + V+V M GG + IE ++NHV M G K Sbjct: 221 FVDDHVTVHMPGGQITIELDEDNHVLMKGPVCK 253 >gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] Length = 301 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 29/259 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + ++F K+ G GN + +DM + A + D ++++ A Sbjct: 29 TTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVE--PSAGA 86 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS-V 118 +R+ N DGSE + CGNG RC+ RF R + TFET+ G++ A+ +GS + + Sbjct: 87 HFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARV--EGSFAEI 144 Query: 119 DMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 D+GE DW PL MD F R+ F+ +G PH + F ++L Sbjct: 145 DLGEQSFAPDWIDRPL-----TMDGAAF----------RSCFLW-VGVPHLVLFAPEELS 188 Query: 177 HYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D G A +F +G N++ AR L T+ERGV LT +CG+ + A+ + Sbjct: 189 RDDCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAAL 248 Query: 235 ASGCLHKTNRAVSVKMLGG 253 ++G L + + V GG Sbjct: 249 SAGLLFGMDSPIEVHNPGG 267 >gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304] gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304] Length = 342 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 37/285 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57 M+ K++G GN ++D + + ++ L+ T D I+ + Sbjct: 1 MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAV----T 56 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRK----SFTFETIRGILV 107 AS I +IN DGS+ CGNG+R V R+L KR SF T+ L Sbjct: 57 ASPTPSIHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116 Query: 108 AKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VS 161 + + + SV++ D + +P F + R+R V L F +S Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLP----FTNLGRNRLINCSVPELLPDLRFTALS 172 Query: 162 MGNPHAIFFVEDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 + NPH + F+ D DL +S GN L + +P F GVN++ A + +L +RT+ERGV Sbjct: 173 VPNPHVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGV 232 Query: 220 GLTAACGSAACAS----VVASGCLHKTNRAVSVKMLGGGLLIEWH 260 GLT ACG+ A+ V+ + + N+ ++V GG + H Sbjct: 233 GLTNACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVH 277 >gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067] Length = 332 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 38/252 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINA---LSTDDNTHF----DQIMLIHD 54 + + F K+ G N ++D +NI+S DA A + D TH D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEE--ENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSK 59 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 +A ++++N DGS CGNG+R V R+L + ET++ IL K + Sbjct: 60 SSEAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVK--KAS 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMG 163 S+ D+ P ++ P+ + + + PV L N V VS+ Sbjct: 118 SLGFDI--PTYQVEISPVNFKPESLPMNL----PVEKLI--NQVVPELDAELAFSAVSVP 169 Query: 164 NPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 NPH I FV+ + D LAS+ N ++P F +GVN+S + S +++ +RT+ERGV Sbjct: 170 NPHLIAFVDQAVLDSDKQEKLASYLN--GENPFFPDGVNVSFVKRLSDDAIYVRTFERGV 227 Query: 220 GLTAACGSAACA 231 G T ACG+A A Sbjct: 228 GFTNACGTAMSA 239 >gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 284 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 10/273 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + ++ + +K +G+GN L++D + + I AL +++ + Sbjct: 2 VMANTIIMSKYQGLGNDYLILDPKKNQVQLQGKKI-ALLCQRGFGLGADGVLYGPVEIDG 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK--ENRDGSI 116 +RI N DGSE GNG+R ++L + K F ET+ G + + +R Sbjct: 61 KLGVRIFNADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATEF 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V++G+P IP++ ++ ++ F V H +++GNPH I F D++ Sbjct: 121 KVNIGKPSFISSDIPVSGEVREVIKENF----VFHGKEYKATCLTVGNPHCIIFT-DNVS 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + F E +NL I R +L++ WERG G T A G+ +CA+ A+ Sbjct: 176 AEAVKNLGPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAAA 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 L ++V GG + I+ ++ ++MTG Sbjct: 236 YKLGLVESRINVNQPGGMIQIDMEEDETIYMTG 268 >gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE] gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE] Length = 279 Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 28/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQDAS 59 + F K++G GN ++ID D + D A H D ++ + A Sbjct: 3 IQFTKLQGNGNDFILIDE--WDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFT-FETIRGIL---VAKENRDG 114 + +RI N DGSE + CGNG+RC ++ L R ET G+L EN Sbjct: 61 LQ--MRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKT 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I V+MG+P+ D IP A+ + H V+ V+ G PHA+ FV D Sbjct: 119 YIKVNMGKPLFDRVKIP-AQGHGEFINVPLHGYEVS--------AVNTGVPHAVVFV-DS 168 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 L DL L+ +F++G N++ + + +L +RT+ERGV G T +CG+ + A+ Sbjct: 169 LEDPDLMDAAPLIRFDKVFAKGANVNFVQ-RDMGNLRVRTYERGVEGETLSCGTGSVAAA 227 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + VK GG L I + +++ +M G A+ ++G+++ Sbjct: 228 AIARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273 >gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch sediment'] Length = 274 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 122/281 (43%), Gaps = 28/281 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM G GN +VID R H +I + LI + D +RI+ Sbjct: 6 FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVADFRMRIL 65 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVDMGEPIL 125 N DGSE + CGNG RCV RF + FET+ GI+ A DGS + + + P Sbjct: 66 NADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWV--DGSKVKLQISRP-- 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I L +S + + H+ ++ G PH + F DL + + G Sbjct: 122 --QGIRLHQSIE--------VDGAAHVV----HSINTGVPHVVLF-STDLEAVPVRTLGR 166 Query: 186 LLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + HP F G N++ A +L +RT+ERGV T ACG+ AS + + L Sbjct: 167 TIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLVA 226 Query: 244 RAVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKL 279 V V++ G +L N VF GE + ++G+L Sbjct: 227 SPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267 >gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] Length = 289 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 43/288 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------NTHF----DQIMLIHDFQD 57 F K+ G GN +VI N + IN S + + HF D ++ I Q+ Sbjct: 13 FTKISGTGNDFIVI-------NDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QN 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 A D N DGS + CGNG RC R++ S+ + SF T G++ + + Sbjct: 64 APTDIQWHFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRL 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V + +P R ++ I + +L + ++ G PHA+ V D+ Sbjct: 124 IGVQLTKP--------------HDHRSKYTIKTIKTEYLLSS--INTGVPHAVLQV-SDI 166 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 +DL + + H M++ G N++I + +++ +RT+ERGV G T +CG+ + A+ + Sbjct: 167 ESFDLMNMAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAI 226 Query: 235 ASGCLHKTNRAVSVKML--GGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + CL + + V ++ GG L I + N V MTG+A + G + Sbjct: 227 VA-CLDDSEVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTI 273 >gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 328 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQ 56 +++ F K+ G N ++D H SD A A+ D +H D I+ + Sbjct: 2 AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 A +R++N DGS CGNG+R V R+L + ET++ IL + + S+ Sbjct: 62 KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVR--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165 D+ P ++ P+ + + + ++G V LF N + VS+ NP Sbjct: 120 GFDI--PTYQVEISPVKFNPESLP---MYVG-VEKLF--NQVIPELDEELAFSAVSVPNP 171 Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H I FV+ + D LASF N +++P F +GVN+S + + +++ +RT+ERGVG Sbjct: 172 HLITFVDQTVLDSDKQEKLASFLN--SENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGF 229 Query: 222 TAACGSAACA 231 T ACG+A A Sbjct: 230 TNACGTAMSA 239 >gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712] Length = 268 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 42/235 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ ++DGS++V M Sbjct: 54 FMDYRNADGSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAM 113 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G +L + + RS+ RN V+MGNPHA+ FVE Sbjct: 114 GRAVLAEAGVTVTVDGRSWPA----------------RN---VNMGNPHAVAFVE----- 149 Query: 178 YDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DL GNL + P ++ +GVN+ + +R ERG T +CG+ ACA Sbjct: 150 -DLDHAGNLFTEPPYEPAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAV 208 Query: 233 VVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + A +V +LGG L+I H + + MTG A EG +D Sbjct: 209 AVATARRDGADPAETGTPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVD 263 >gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 277 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 36/289 (12%) Query: 5 MVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++F KM G GN ++ID R NI S + D ++L+ + Sbjct: 1 MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVE--RSPRA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D R N DGSEV+ CGNG RCV RF + + + +FET+ G L+ E R + + Sbjct: 59 DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAG-LIDAELRGDDVKLR 117 Query: 120 MGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + EP + + IP+ +D ++ G PH + FVE +L Sbjct: 118 LTEPSSLQANQPIPVGDEILTVDS------------------LNTGVPHVVAFVE-ELGG 158 Query: 178 YDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ +G L F G N + VTSL SL +RT+ERGV T ACG+ + AS +A Sbjct: 159 FDVFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALA 218 Query: 236 SGCLHKTNRAVSVKMLGGGLL---IEWHDN--NHVFMTGEAKKEWEGKL 279 + V V + G L E D +V+M G + +EG+L Sbjct: 219 AAARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL 267 >gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] Length = 267 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62 F KME GN ++ D R NI + I L+ + HF D I+ + + D Sbjct: 3 FWKMEAAGNDFVIFDGR----NIKIEDIQDLAKKLCDRHFGVGADGILFCE--ESSQADI 56 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS- 115 + N DGS + CGNG+RC+ RF+ + + + ET G+ L EN S Sbjct: 57 KMNYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHISQ 116 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V+MG+ I W+ + ++ I + F R V++G PH V++ + Sbjct: 117 VKVEMGKAI--WE--------KEFQKEILEIEGRSFDFYR----VTVGVPHIAILVDEFM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L +G+LL KH F N++ +V + + + ++TWERG G T C + + V Sbjct: 163 KDEELNYWGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVI 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K V GG + ++ D + V + G+A + G +D+ Sbjct: 223 LQRLQKIKGEVHFYTEGGDVFVQTQD-DFVTIYGKANLIFTGDMDV 267 >gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816] gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220] gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A] Length = 329 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 34/248 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58 + F K+ G N ++D H SD A A+ D H D I+ + + Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167 D+ P ++ P+ + + + H+G V LF N + VS+ NPH Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173 Query: 168 IFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T Sbjct: 174 ITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231 Query: 224 ACGSAACA 231 ACG+A A Sbjct: 232 ACGTAMSA 239 >gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] Length = 329 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 34/248 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58 + F K+ G N ++D H SD A A+ D H D I+ + + Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167 D+ P ++ P+ + + + H+G V LF N + VS+ NPH Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173 Query: 168 IFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T Sbjct: 174 ITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231 Query: 224 ACGSAACA 231 ACG+A A Sbjct: 232 ACGTAMSA 239 >gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] Length = 333 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 124/268 (46%), Gaps = 23/268 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57 M K+ G N ++D + +T + + + T +T D +++++ Sbjct: 1 MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L + + F +T+ L + D Sbjct: 61 SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMNANLRVSKQAD---- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAI-FF 170 + G P ++ P++ + +K+ D + + ++ + +++ NPH I F Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176 Query: 171 VEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L + +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGG 253 A+ +A H + N+ + V GG Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGG 264 >gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] Length = 274 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 32/227 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS--- 115 D +R+ D SE + CGNG+RC+ ++ + K+K+F+ ET+ G++ + D Sbjct: 70 DIRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDF 129 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++DMG + D +R D M + V+ G PHA+ FV + Sbjct: 130 MATIDMGTAVYDE-----SREIDGM----------------TVYSVNTGVPHAVIFV-GN 167 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 + + + HP F +G N++ ++T + +RT+ERGV G T +CG+ + AS Sbjct: 168 VDGIAINEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASA 227 Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + KT+ V VK +GG L I D MTG A + G++ Sbjct: 228 LIAAKTGKTHGSVVHVKTVGGPLDITVGDIPQ--MTGPAATVFVGEI 272 >gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] Length = 268 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 37/289 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R ++T IN L T D ++LI A+ + Sbjct: 3 ITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIE--PSATFSFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENR-DGSISVD 119 + N DG CGNG RC V F + ++TFE A NR D + Sbjct: 61 KYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFE-------ANGNRYDAWV--- 110 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +GE + K++ + +D + F ++ G+PHAI ++ DL D Sbjct: 111 LGEENVKLKMLAPQGFKENLDLEG-----------EQCFALNTGSPHAIIYI-SDLDAVD 158 Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS- 236 + G+ + + F +G N++ +TS SL LRT+ERGV T ACG+ A A+ + S Sbjct: 159 VNKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMSH 218 Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 G + T V+VK G L +E++++ + VF++G AK +EG I+ Sbjct: 219 KLGKISSTTVQVTVKS-GDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266 >gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] Length = 332 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57 V K+ G GN ++D ++ AIN D +D ++++ + Sbjct: 3 VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + D Sbjct: 63 PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ D + + + + D I P L+ V++ NPH I FV+ Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 180 Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T ACG+A Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 AS + LH+ N+ + V GG Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268 >gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] Length = 266 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 35/288 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F+K+ G GN ++ID R ++T INAL T D ++L+ D + Sbjct: 3 INFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVE--PSLHCDFTM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC V F + + + F+FE A+ ++ + M Sbjct: 61 KYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRLHM 120 Query: 121 GEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 LD AR F M+ + F VN G+PH + F DD+ + Sbjct: 121 ----LD------ARDFRYHMEIEGFACTFVN-----------TGSPHVVIFA-DDINAIN 158 Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 +A G + ++ F EG N++ +TS S+ LRT+ERGV T ACG+ A A+ + S Sbjct: 159 VAEKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIISR 218 Query: 238 CLHKT-NRAVSVKMLGGGLL-IEWHDN-NHVFMTGEAKKEWEGKLDIK 282 L K +V V + G +L + + +N ++ +TG AK ++G + I Sbjct: 219 KLGKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266 >gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 334 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57 V K+ G GN ++D ++ AIN D +D ++++ + Sbjct: 5 VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 64 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + D Sbjct: 65 PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 124 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ D + + + + D I P L+ V++ NPH I FV+ Sbjct: 125 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 182 Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T ACG+A Sbjct: 183 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 242 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 AS + LH+ N+ + V GG Sbjct: 243 SASSLMYVLLHQESTDFNQEIHVTNPGG 270 >gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] Length = 332 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57 V K+ G GN ++D ++ AIN D +D ++++ + Sbjct: 3 VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + D Sbjct: 63 PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ D + + + + D I P L+ V++ NPH I FV+ Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 180 Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T ACG+A Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 AS + LH+ N+ + V GG Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268 >gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 282 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 8/277 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K +GN LV+ D + I + +LI F D +R Sbjct: 1 MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVLIGPFSSNVADFGLR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMGE 122 I N D SE + GNG+R R L + +K K FT ET G++ A+ + +G + V+MG+ Sbjct: 61 IFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMGK 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP+ ++ + ++ +NH++ V++GNPH + E Sbjct: 121 VSFLSQDIPVWGEPREVLLENLNVMSLNHIY----SAVTIGNPHCVILAESPT-EIMAKE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG L+ HP F N+ +V + + WERG G T A GS++CA+ + L Sbjct: 176 FGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGLC 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ V M GG + IE ++ V M+G G + Sbjct: 236 DSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSI 272 >gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 284 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +GN LVI+ + +T + I + + +L+ +RI Sbjct: 3 FYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124 N DGSE + GNG+R R+L + K F+ ET GI+ A ++ ++ V+MG+ Sbjct: 63 NPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMGKVS 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP+ ++ +++ + F ++GNPH + + DD+ +FG Sbjct: 123 FWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVARNFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + +P+F N+ +V ++ + WERG G T A GS++ A+ A L + Sbjct: 178 PIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSAAAATAHK-LGLCDS 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 237 KIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 271 >gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] Length = 278 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 23/290 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+K++ GN ++++ D +++S A D +M + + A D + Sbjct: 3 FSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKMNY 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120 N DGS + CGNG+RC +F+ +++KSF+ ET GI L + ISVDM Sbjct: 61 YNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G +P + + + L + + V MG PH + V DD +YD+ Sbjct: 121 GRADFRATSVPCTLDSEIILEKEIEV-EGQKLKISS---VLMGVPHTVILV-DDYDNYDI 175 Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G + +F N++ +V E++ ++TWERG T CG+ C+S V + L Sbjct: 176 DRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAHKL 235 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 K +V + GG + + + + +V M G A+ I TG+++K Sbjct: 236 GKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAET-------ICTGEFLK 278 >gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7] gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7] Length = 326 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 36/250 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQDA 58 ++ K+ G N+ ++D +T + +L+ TD D ++L+ + + Sbjct: 3 LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113 + +R+IN DGSE CGNG+R V R+L+ + + ET+ L K+ + Sbjct: 63 TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122 Query: 114 -------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 +S ++ + +WK +F +D++ + P H V++ NPH Sbjct: 123 QTFQVEISPVSFNVAKLPFNWK----DETF--IDQELPELAPGLHF-----STVAVPNPH 171 Query: 167 AIFFVEDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 I FV+ +LA++ N +P F +GVN+S + + +RT+ERGVG T Sbjct: 172 LISFVDHKTIKSSLLKELATYLN--GANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFT 229 Query: 223 AACGSAACAS 232 ACG+A AS Sbjct: 230 NACGTAMAAS 239 >gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459] gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 329 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58 + F K+ G N ++D H SD A A+ D H D I+ + + Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167 D+ P ++ P+ + + + H+G V LF N + VS+ NPH Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173 Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 I FV+ D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231 Query: 224 ACGSAACA 231 ACG+A A Sbjct: 232 ACGTAMSA 239 >gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] Length = 333 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D ++ I+ A +R+IN DGSE CGNG+R V R+L + + +F +T+ L Sbjct: 50 DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANL 109 Query: 107 VAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-V 160 +++ + + +V++ + +P F + +R + ++ F + Sbjct: 110 RVRKHDNLAKGVKAFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFTSI 165 Query: 161 SMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 ++ NPH I F++ + + L G L +P F +GVN++ A++ L +RT+ERG Sbjct: 166 AVPNPHLISFMDQNQIKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERG 225 Query: 219 VGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266 VG T ACG+ A+ +A CL N+++ V GG + H NH + Sbjct: 226 VGFTNACGTGMSATSLAF-CLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTY 277 >gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] Length = 329 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58 + F K+ G N ++D H SD A A+ D H D I+ + + Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167 D+ P ++ P+ + + + H+G V LF N + VS+ NPH Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173 Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 I FV+ D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231 Query: 224 ACGSAACA 231 ACG+A A Sbjct: 232 ACGTAMSA 239 >gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] Length = 329 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58 + F K+ G N ++D H SD A A+ D H D I+ + + Sbjct: 4 IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 64 GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167 D+ P ++ P+ + + + H+G V LF N + VS+ NPH Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173 Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 I FV+ D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231 Query: 224 ACGSAACA 231 ACG+A A Sbjct: 232 ACGTAMSA 239 >gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500] Length = 428 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 12/135 (8%) Query: 159 VVSMGNPHAIFFVEDD---------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 +VSMGNPH + F++D+ L D++ G L +F + N+ V + Sbjct: 293 LVSMGNPHCVIFLKDNQGSIADESQLESMDISYIGRKLESDGLFIDSCNVEFVSVIAQNK 352 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVF 266 L +R WERG G T ACG+ ACA VAS K+ + ++SV+M GG L+I+W+ ++N V+ Sbjct: 353 LKVRVWERGAGETLACGTGACAVAVASILTGKSVISESISVEMPGGELIIDWNKEDNKVY 412 Query: 267 MTGEAKKEWEGKLDI 281 TG A + +++I Sbjct: 413 KTGPATTVYSSEVNI 427 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 DQ++++ D + D + I N DGS+ CGNG+RC +++T Sbjct: 110 DQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCFSKYIT 152 >gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378] Length = 329 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 44/301 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56 + + F K+ G N ++D SDA A + D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165 D+ P ++ P+ + + + ++G V LF N V VS+ NP Sbjct: 120 GFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDSELAFSAVSVPNP 171 Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG Sbjct: 172 HLITFVDQTVLDSDKQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T ACG+A A + L K + + ++D V +T AKK+ G++ + Sbjct: 230 TNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGEISL 279 Query: 282 K 282 + Sbjct: 280 Q 280 >gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262] gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262] Length = 329 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 44/301 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56 + + F K+ G N ++D SDA A + D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165 D+ P ++ P+ + + + ++G V LF N V VS+ NP Sbjct: 120 GFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDSELAFSAVSVPNP 171 Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG Sbjct: 172 HLITFVDQTVLDSDKQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T ACG+A A + L K + + ++D V +T AKK+ G++ + Sbjct: 230 TNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGEISL 279 Query: 282 K 282 + Sbjct: 280 Q 280 >gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 295 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 10/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + + K +GN LVI ++ ++ + + +L+ + S D Sbjct: 13 KQKKIKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDGILVGPLESESSD 72 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-SISV 118 +RI N DGSE + GNG+R RFL + + FT ET+ G +V + +G +++V Sbjct: 73 FRLRIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVTV 132 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+ IP A ++ R+ I + ++GNPH + E Sbjct: 133 EMGKVSFLSTKIPAAGEEREVLREHMDISGATFEYC----AATVGNPHCVILCEKSTP-- 186 Query: 179 DLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +LA +G L+ P F N+ + ++ + WERG G T A GS++ A+ + Sbjct: 187 ELARCYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAY 246 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L N ++V M GG L I + + MTG + EG +D Sbjct: 247 KLGFCNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMD 289 >gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] Length = 285 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 16/273 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V + G+GN +V D +TS+ + + D N ++ +++ Sbjct: 3 VVLERYHGLGNDYVVFDPNKNELELTSENVRMIC-DRNEGLGSDGVLEGPILKEDGMYVK 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121 + N DGSE ++ GNG+R ++L S +++K+F T G + + N DGS + V MG Sbjct: 62 VWNPDGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178 + IP+ +R + + +F R + VS+GNPH + + + + Sbjct: 122 KLSFWSDDIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKP 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G+ F + +N I +V E + + +ERG G T A G+ ACA+ + Sbjct: 174 LVCKIGDYAELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L TN V V+M GG L +E ++ +VFMTG+ Sbjct: 234 LGMTNNKVIVQMPGGELQVEIEEDWNVFMTGDV 266 >gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] Length = 279 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 38/290 (13%) Query: 8 FAKMEGIGNKILVID---------MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 F K+ G GN +V D ++ + + I + D ++LI D Sbjct: 3 FVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPDDP 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS-I 116 D + N DGS CGNG RC VRF + + + FET+ G++ A+ +G + Sbjct: 63 QNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGKRV 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + EP S+ +M VN + F ++ G PH + V DDL Sbjct: 123 KVLLTEP----------HSYREMQIK------VNGTEISGSF-INTGVPHFVMLV-DDLE 164 Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 ++D+ ++G + H FS G N++ + S S+ +RT+ERGV T ACG+ A AS + Sbjct: 165 NFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATASAI 224 Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKL 279 + G + K + V VK GG L D+ VF+ G K ++G L Sbjct: 225 VAYQKGLVKK--KPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272 >gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601] gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601] Length = 329 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 21/192 (10%) Query: 55 FQDASVDA----FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 F AS++A +R+ N D SE CGNG+R V R+L + K ET++ L + Sbjct: 55 FVSASINAGAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQ 114 Query: 111 NRDGSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGN 164 S+ G P ++ P+ A F + F+ P+ L F V++ N Sbjct: 115 AE----SLGFGIPTYQVEISPVLFEPEALPFHYNGKAVFN-EPIPELDNELAFSTVAVPN 169 Query: 165 PHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH I FV+ + D LAS+ N ++P F +GVN+S + + + + +RT+ERGVG Sbjct: 170 PHLISFVDQEQLDSDKQETLASYLN--GENPYFPDGVNVSFVKRLAADKIYVRTFERGVG 227 Query: 221 LTAACGSAACAS 232 T ACG+A AS Sbjct: 228 FTNACGTAMSAS 239 >gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99] Length = 329 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 27/183 (14%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ D+ P Sbjct: 69 MRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSLGFDI--P 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVE 172 ++ P+ + + + H+G V LF N + VS+ NPH I FV+ Sbjct: 125 TYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDTELAFSAVSVPNPHLITFVD 178 Query: 173 DDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QSVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTA 236 Query: 229 ACA 231 A Sbjct: 237 MSA 239 >gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161] gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818] gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818] Length = 329 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 40/253 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD------DNTH----FDQIMLIH 53 + + F K+ G N ++D +N+ ++ + TD D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEE---ENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K + Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KA 116 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSM 162 S+ D+ P ++ P+ + + + H+G V LF N + VS+ Sbjct: 117 TSLGFDI--PTYQVEISPVKFASETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSV 168 Query: 163 GNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 NPH I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERG Sbjct: 169 PNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERG 226 Query: 219 VGLTAACGSAACA 231 VG T ACG+A A Sbjct: 227 VGFTNACGTAMSA 239 >gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023] Length = 329 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 37/251 (14%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D I+ + +A +R++N DGS CGNG+R V R+L + ET++ IL Sbjct: 52 DGILYVTKSNEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 111 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159 K + S+ D+ P ++ P+ + + + ++G V LF N + Sbjct: 112 DVK--KATSLGFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVIPELDSEL 161 Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 VS+ NPH I FV+ + D LAS+ N +++P F +GVN+S + S +++ Sbjct: 162 AFSAVSVPNPHLITFVDQTVLDSDKQATLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 219 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +RT+ERGVG T ACG+A A + L K + + ++D V +T A Sbjct: 220 VRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--A 269 Query: 272 KKEWEGKLDIK 282 KK+ G++ ++ Sbjct: 270 KKDEAGEISLQ 280 >gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 270 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 33/242 (13%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +VID G + + + D ++++ ++ D + Sbjct: 1 MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVDMGE 122 R+ N DGSE + CGNG RC+ R+ R + +FETI GI+ A+ +GS +++DMGE Sbjct: 59 RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKAR--VEGSFVNLDMGE 116 Query: 123 PIL--DW--KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LY 176 L W + +P+A G V FL +G PH + ++ED + Sbjct: 117 VDLGKGWFGRKVPMAG------------GEVEADFL------IVGVPHLVIYLEDPDKVD 158 Query: 177 HYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 DL +G L + +F EG N++ SL + T+ERGV LT +CG+ +CAS V Sbjct: 159 REDLTRWGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAV 218 Query: 235 AS 236 + Sbjct: 219 VA 220 >gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003] Length = 303 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 37/251 (14%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D I+ + +A +R++N DGS CGNG+R V R+L + ET++ IL Sbjct: 26 DGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 85 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159 K + S+ D+ P ++ P+ + + + ++G V LF N V Sbjct: 86 DVK--KATSLGFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDAEL 135 Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 VS+ NPH I FV+ + D LAS+ N +++P F +GVN+S + S +++ Sbjct: 136 AFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 193 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +RT+ERGVG T ACG+A A + L K + + ++D V +T A Sbjct: 194 VRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--A 243 Query: 272 KKEWEGKLDIK 282 KK+ G + ++ Sbjct: 244 KKDEAGDISLQ 254 >gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] Length = 282 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 121/284 (42%), Gaps = 25/284 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHD--FQDASVDA 62 F KM+G GN +VID R + + A A + D I + + VD Sbjct: 11 FVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGVDF 70 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG RC R + T G + A+ G + V + Sbjct: 71 IWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQL- 129 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D +L + DK R F V+ G PH + FV DD+ DL Sbjct: 130 TPAKDARLDIALPAADKTLRAHF---------------VNTGVPHTVIFV-DDVAKVDLP 173 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + H F +G N + A+V +++ LRT+ERGV T ACG+ A A+V S L Sbjct: 174 DLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSHKL 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T V+V GG L D ++VF+ G A + G L +++ Sbjct: 234 GLTGPEVNVTTSGGEQLTISVDGDNVFLAGAATVTFTGDLLLES 277 >gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3] gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3] Length = 302 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 47/296 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFD-----QIMLIHDFQDASVDA 62 F K G GN +++ ++T+D + AL D T +++L +A+ A Sbjct: 20 FVKGHGTGNDFVLLPDPDGDLDLTADLVRALC-DRRTGIGGDGVLRVVLCAAVPEAAGLA 78 Query: 63 -----FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DGS + CGNG R R+L + F T G+ + + DG Sbjct: 79 GRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDGD 138 Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P I+D P+ + DRD F VSMGNPHA+ F D Sbjct: 139 VTVDMGPPRIIDGPGAPVTVA----DRD----------FTAT--AVSMGNPHAVCFAGD- 181 Query: 175 LYHYDLASFGNL-LAKHPMFS-----EGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D+A L L + P FS +GVN+ I V + +R +ERGVG TA+CG+ Sbjct: 182 ---LDVAGLRRLDLTRPPSFSPVDFPDGVNVEIV-VDRPAGVAMRVFERGVGETASCGTG 237 Query: 229 ACASVVASGCLHKTNRA-----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ACA VA A V V + GGGL++ W V + G A+ ++G L Sbjct: 238 ACAVAVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQPET-VLLRGPAELVFDGVL 292 >gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] Length = 329 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 34/250 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56 + + F K+ G N ++D SDA A + D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVK--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165 D+ P ++ P+ + + + H+G V LF N + VS+ NP Sbjct: 120 GFDI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNP 171 Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H I FV+ + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG Sbjct: 172 HLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229 Query: 222 TAACGSAACA 231 T ACG+A A Sbjct: 230 TNACGTAMSA 239 >gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S] Length = 329 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 32/295 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56 + + F K+ G N ++D SDA A + D H D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K + S+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 D+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 120 GFDI--PTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T ACG+ Sbjct: 178 DQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGT 235 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A A + L K + + ++D V +T AKK+ G + ++ Sbjct: 236 AMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGDISLQ 280 >gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] Length = 293 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 107/238 (44%), Gaps = 33/238 (13%) Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--------FTFET 101 M ++ Q A + F+ N DGS + CGNG+R F+T+R K F T Sbjct: 63 MPGYEDQAAEAEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGT 122 Query: 102 IRGI----LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 GI L A ++VDMG P+ P R +D H R+ Sbjct: 123 RGGIKRVTLRATGENTADVTVDMGIPVF-----PTERGAVTVD---------VHGTPRDA 168 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTW 215 V MGNPHA+ FV+ D S + P +++EGVN+ A + L +R + Sbjct: 169 VDVDMGNPHAVVFVDS---TDDAGSLYEMPTVSPTGVYAEGVNVEFAADVAPRHLAMRVY 225 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEA 271 ERGVG T +CG+ ACA ++A+ + +V +LGG L + H+ MTG A Sbjct: 226 ERGVGETRSCGTGACAVMIAAARRDAADAGTEYTVDVLGGRLRFVERADGHLEMTGPA 283 >gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] Length = 356 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 143/336 (42%), Gaps = 72/336 (21%) Query: 6 VDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDDN-----THFDQIMLIHD 54 + F+KM G GN +V + + G + IT + ++ + FDQ ++I++ Sbjct: 13 IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72 Query: 55 FQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFT------------- 98 A +IN DG + CGNG+RC +++ ++ KS Sbjct: 73 NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132 Query: 99 -FETIRGILVA--------KENRDGSISVDMGEPIL----DWKLIPLARSFDK-MDRDRF 144 ET+ G+++ + I V+M ++ +K +K ++ Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192 Query: 145 HIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLYHYDLASFG--------------- 184 +I + L L +VSMGNPH + F+E ++ +L+S G Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252 Query: 185 -NLLAKHPMFSEGVNLSIARVTSLESLDL---RTWERGVGLTAACGSAAC----ASVVAS 236 L K P+F +G N+ + + + R +ERG G T ACG+ AC AS++ S Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEA 271 C ++ V+V M GG LLI+W + VF TG A Sbjct: 313 YCTQ--DKEVTVSMPGGDLLIQWSSETGEVFKTGPA 346 >gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] Length = 277 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 27/263 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177 P + +FD+ + + V+++ L +P G PHA+ E +L Sbjct: 122 PPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258 H+ A V + +LGG L +E Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248 >gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136] Length = 274 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 34/293 (11%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++++ F KM G GN +++D R ++ ++I L +L + D Sbjct: 2 ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGGDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVDM 120 +R N DG E + CGNG RC RF+ + FET G++ A+ D + ++M Sbjct: 62 RMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEFFGD-QVEINM 120 Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175 +P L+ L+ +D + VN G PHA+ FV+D L Sbjct: 121 SQPHSLKLNQGLV--------VDGTPLEVHSVN-----------TGVPHAVVFVDDVNAL 161 Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 ++ G L H F+ +G N + A V S S+ +RT+ERGV T ACG+ A Sbjct: 162 STAEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACA 221 Query: 234 VASGCLHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281 + LH VSVK+ GG L + ++ V+ + G A ++GKL++ Sbjct: 222 LIHHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274 >gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] Length = 277 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 27/263 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177 P + +FD+ + + V+++ L +P G PHA+ E +L Sbjct: 122 PPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258 H+ A V + +LGG L +E Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248 >gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.] Length = 282 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 43/291 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA------INALSTDDNTHFDQIMLIHDFQDAS 59 + F KM G GN ++ID R +N+ D + + D +LI + S Sbjct: 11 IHFFKMSGSGNDFIIIDNR---ENLIEDKGLASFITKVCARRMSVGADGFILIENCD--S 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D + N DGS + CGNG RC F +++ + +F T GI+ A+ DG + V Sbjct: 66 ADFKWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVT-DGRVKV 124 Query: 119 DMGEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +M +P D++ IPL + GP+ L + G PH + + DD+ Sbjct: 125 NMMDPTYCKYDYQ-IPLKK------------GPITVSSL------NTGVPHVV-IITDDI 164 Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 D+ G + H ++ G N++ S ++ +RT+ERGV G T ACG+ + AS Sbjct: 165 EGADVDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASA 224 Query: 234 VASGCLHKTNRAVSVKMLGGGLL-IEWHDNN----HVFMTGEAKKEWEGKL 279 + + C +K + V G+L I + +N +++ G+A+ ++G+L Sbjct: 225 LVAACKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275 >gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 282 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 10/268 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K +G+GN LV+D + I AL +++ + + + Sbjct: 5 ITMIKYQGLGNDYLVLDPNKNRVQLQGKKI-ALLCQRGFGLGADGVLYGPVEINGKMGVH 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK--ENRDGSISVDMG 121 I N DGSE GNG+R ++L +K + F+ ET+ G + + +R V+MG Sbjct: 64 IYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATEFRVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ + F ++ +++GNPH I F+ D++ Sbjct: 124 KASFISREIPVTGEVREVINETFTFNKKDY----KATCLTVGNPHCIIFM-DEVSPEIAK 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA+ L Sbjct: 179 DLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLGL 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 T ++V GG + I+ D++ ++MTG Sbjct: 239 TESRINVNQPGGIIQIDIKDDDTIYMTG 266 >gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp. lavendulae] Length = 287 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 124/283 (43%), Gaps = 13/283 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G GN +V+D+R D + + AL+ D ++ I + + A Sbjct: 7 PSTLPFTKMHGAGNDFVVLDLRDGPDP-SPELCRALADRHKGVGCDLVLGIREPRSARAV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A I DGS CGNG RCV VR +R R F ++ G + Sbjct: 66 AAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPR--FALDSPSGTHEVDVLDADTFR 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + P + IPL + D +G + VSMGNPHA+ V DD Sbjct: 124 VALAVPRFAPESIPLFGHDGEQDLYEADLGDGTRVRF---AAVSMGNPHAVIEV-DDTAT 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A G + +F VN+ ARV S + + LR E G G T ACGS ACA+ Sbjct: 180 APVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVLM 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + +R VSV + GG L I W D+ V MTG A +EG Sbjct: 240 RRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282 >gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] Length = 279 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 130/291 (44%), Gaps = 43/291 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R + + A + D + LI A D Sbjct: 8 IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSI 116 R N DGSE + CGNG RCV RF +RM+ FET+ GI+ A D + Sbjct: 66 KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMR-----FETLAGIVEATVA-DTTA 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++ M P SF + DR + +G LF+ + V G PHA+ FV DD+ Sbjct: 120 TIKMTSP----------HSF-RFDR-QIEVG--GQLFMVHS--VDTGVPHAVIFV-DDID 162 Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ G L HP+F+ G N++ T + +RT+ERGV T ACG+ A + Sbjct: 163 EVDMVGLGRQLRHHPVFAPMGTNVNFVGRTG-DGFRIRTYERGVEDETMACGTGVVAGAL 221 Query: 235 ASGCLHKTNRAVSVKMLGG-GLLIEWH-----DNNHVFMTGEAKKEWEGKL 279 + + V++ GG L +++ D + V + G A + G+L Sbjct: 222 IAAVKGYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGEL 272 >gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] Length = 382 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 3/127 (2%) Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 +VSMGNPHA+ V DD+ + G L+A H F++ VN +V + LR +ERG Sbjct: 255 IVSMGNPHAVQLV-DDVERAPVPEIGPLIANHARFAQRVNAGFMQVVDRGHVRLRVFERG 313 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWE 276 G T ACGS ACA+V A L + V V M GG + + W + V MTG A +E Sbjct: 314 AGETLACGSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATDSVVMTGPATTVFE 373 Query: 277 GKLDIKT 283 G++++ + Sbjct: 374 GQIELPS 380 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 9/134 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 + F KM+G GN +V+D +++ L+ + HF DQI+ + A + Sbjct: 36 QIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLA---DRHFGVGADQILGVRPAPAADI 92 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DGSEV CGNG RC+ RF+ + ++ +T G++ + N DG +SV Sbjct: 93 DFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSV 152 Query: 119 DMGEPILDWKLIPL 132 DMG + +P Sbjct: 153 DMGRAQFEPASLPF 166 >gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] Length = 285 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 24/295 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF--DQIMLIHDFQDASVD 61 MVDF K G+GN +VID + ++ + N L N D I+ +D + Sbjct: 1 MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRDGSI 116 +I+N DGSE + GNG+R ++ + F T G I V +N + I Sbjct: 61 --FKILNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTN-LI 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175 V +G+ IP+ K+D + L + V++GNPH I D Sbjct: 118 KVSIGQYSFINHKIPV-----KLDCTEVLNQEIELLGKKEIINCVNIGNPHCILI--KDK 170 Query: 176 YHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DLA G +L HP+F N+ ++ ++ + WERG G T A G+++CA+ Sbjct: 171 ISKDLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASC 230 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + L + V+V+M GG + +E + VF+TGE + +G + ++IKK Sbjct: 231 TAYILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKG---VFASEFIKK 281 >gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 45/243 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ +DG ++V M Sbjct: 71 FMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIAKDGDVTVGM 130 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+ +L + ++ RS+ RN V+MGNPHA+ FV+ Sbjct: 131 GKALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA G+LLA P+ + +GVN+ + LR ERG G T +CG+ ACA Sbjct: 167 -DLAHAGDLLAPPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGACAV 225 Query: 233 VVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 VA+ + T +V + GG L+I + + MTG A EG+++ + Sbjct: 226 AVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE---AE 282 Query: 286 WIK 288 W++ Sbjct: 283 WLE 285 >gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988] Length = 329 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 27/183 (14%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R++N DGS CGNG+R V R+L + ET++ IL K + S+ D+ P Sbjct: 69 MRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVK--KATSLGFDI--P 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVE 172 ++ P+ + + + H+G V LF N + VS+ NPH I FV+ Sbjct: 125 TYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + D LAS+ N +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTA 236 Query: 229 ACA 231 A Sbjct: 237 MSA 239 >gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] Length = 361 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 55/297 (18%) Query: 47 DQIMLIHDFQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFT----- 98 DQ+++ ++ A +IN DG + CGNG+RC +F+ ++++ KS Sbjct: 65 DQLIICNNNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKK 124 Query: 99 ----------FETIRGILVA--------KENRDGSISVDMGEPIL----DWKLIPLARSF 136 ET+ G+++ + V+MG ++ WK Sbjct: 125 DETTSEIEQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLN 184 Query: 137 DKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVED--DLYHYDLASFGNL--- 186 +K D+ L L N +VSMGNPH I F++ +L + + NL Sbjct: 185 NKQSIDKSAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTM 244 Query: 187 --------LAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVV 234 L KHP+F++ N+ ++ L R +ERG G T ACG+ A A V Sbjct: 245 KIEDIAVALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAV 304 Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 AS + + + V+ M GG LLI+W N +VF TG A + ++DI+ + I+ Sbjct: 305 ASILMGHCDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIEINRQIE 361 >gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28] Length = 271 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 27/210 (12%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D I+ + +A +R++N DGS CGNG+R V R+L + ET++ IL Sbjct: 43 DGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 102 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159 K+ + S+ P ++ P+ + + + ++G V LF N V Sbjct: 103 DVKK----ATSLGFDIPTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDAEL 152 Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 VS+ NPH I FV+ + D LAS+ N +++P F +GVN+S + S +++ Sbjct: 153 AFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 210 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHK 241 +RT+ERGVG T ACG+A A + L K Sbjct: 211 VRTFERGVGFTNACGTAMSACSLIKKMLDK 240 >gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] Length = 321 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 14/261 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDAS 59 ++ K G GN ++ID N T + AI D I+ + + Sbjct: 2 FIEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQ--KSEK 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---GSI 116 ++IIN DGSE + CGNG+RCV +FL ET++ + + ++ +D G Sbjct: 60 CVGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVF 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + ++ +D+ + L ++K + + ++ +R +S+ NPH + FVE ++ Sbjct: 120 TDEITIDSIDFNVDSLPLVYEKENLFFEKLTALSD--IREFTAISITNPHLVSFVE-EIE 176 Query: 177 HYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L + G + +GVN++ + +S+ ++T+ERGVGLT +CG+ +S +A Sbjct: 177 KEELKAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSSSIA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLL 256 + H N GG++ Sbjct: 237 TLLKHGINEKTYNVYNDGGMI 257 >gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] Length = 290 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 16/273 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V + G+GN +V D +T + + + D N ++ F++ Sbjct: 8 VVLERYHGLGNDYVVFDPNKNELGLTPENVRMIC-DRNAGLGSDGVLEGPVMKEEGMFVK 66 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121 + N DGSE ++ GNG+R ++L +++K F T G + VA N DGS + V MG Sbjct: 67 VWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDGSRLRVSMG 126 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178 + IP+ +R + + +F R + V++GNPH + + + + Sbjct: 127 KLSFYSDDIPVTG-------ERREVINEDMVFGRTLYPVTCVTIGNPHCVIPMRE-ISKP 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G+ F +N I +V E++ + +ERG G T A G+ ACA+ + Sbjct: 179 LVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAAGVAYK 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L TN V V M GG L +E D+ +V+MTG+ Sbjct: 239 LGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDV 271 >gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] Length = 285 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 24/278 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--------DQIMLIHDFQDAS 59 F+K +GN LV+D + DA TDD +L Sbjct: 3 FSKYHALGNDYLVLDPK--------DAPELPGTDDTIRICHRNFGLGSDGILYGPIPTER 54 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SI 116 D +RIIN DGSE + GNG+R R+L ++ + FT +T+ GI+ + + SI Sbjct: 55 ADFGLRIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSI 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+ + IP+ ++ D++ H +N ++ +GNPH + + + Sbjct: 115 KVDMGQVRFGHEHIPVDGP-EQSDQNLGHELEINGTNYTT-YIADIGNPHCVVPLPE--I 170 Query: 177 HYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +LA G ++ HP F N+ + ++ + WERG G T A GS++ A+ Sbjct: 171 SEELACKDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAV 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + + + ++V M GG + IE D+ + MTG A + Sbjct: 231 AHRIGLCDETITVHMPGGKIGIEIGDDYAIRMTGPATR 268 >gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379] gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] Length = 288 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 105/232 (45%), Gaps = 36/232 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R +L ++ T T G ++G I+V M Sbjct: 72 FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVHLAKNGDITVSM 131 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ L+P A +D + RN V+MGNPHA+ FV DDL H Sbjct: 132 GQ-----ALLPGASVTVSVDGRSWPA--------RN---VNMGNPHAVAFV-DDLDHA-- 172 Query: 181 ASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G+L + P ++ EGVN+ + +R ERG G T +CG+ ACA VA Sbjct: 173 ---GDLFSAPPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAVAVA 229 Query: 236 SGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + AV+ V + GG L+I H + V MTG A EG +D Sbjct: 230 TARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVID 281 >gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] Length = 277 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 27/263 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A +S Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWR-----LSAKHY 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177 + IL+ P +FD+ + + V+++ L +P G PHA+ E +L Sbjct: 117 KVILN---PPTVTTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258 H+ A V + +LGG L +E Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248 >gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1] gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1] Length = 277 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 30/279 (10%) Query: 8 FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ N+ + TD +T D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG- 121 I N DGS ++CGNG+R + R+L R + ET I ++D I+VD+G Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122 Query: 122 -----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 EP L + K F I V+ ++SMGNPH I + ++D + Sbjct: 123 AHMLTEPYEPLSLKSDVTKYCKEIETSFGIWMVD--------MISMGNPHFIIYTDED-H 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 H G L ++ VN+ + V + L L T+ERG G T ACG+ A+V ++ Sbjct: 174 HTFYEEMGRLSKRY-----DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASA 228 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + N + V + GG L ++W N+H+ +G+ K Sbjct: 229 VVRRQVLPNEIIKVYLPGGILEVKWDLNDHLLTSGKTTK 267 >gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] Length = 358 Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 93/343 (27%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---------------------D 47 +KM G GN +V + +A+ L++DD + D Sbjct: 19 SKMHGAGNDFVVFHI---------NAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCD 69 Query: 48 QIMLIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTF------ 99 Q++++ D F + +INCDG CGNG+RC ++L + +K KS ++ Sbjct: 70 QLIIVDDSPKNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQ 129 Query: 100 --ETIRGI-----LVAKENRDGS------ISVDMGEP---------------ILDWKLIP 131 ET G+ L+ +N D + V+MG+P IL IP Sbjct: 130 LIETKSGVIKTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIP 189 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--------------DDLYH 177 SF + D ++ N + + +VS G HA+ F++ +DL Sbjct: 190 PKESF-VITIDDLNLPYCNKIEI---VLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSK 245 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARV------TSLESLDLRTWERGVGLTAACGSAACA 231 ++ + + +HP+F + ++ V + + R ERG G T ACG+ ACA Sbjct: 246 INIKDLADKIQEHPLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACA 305 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEW-HDNNHVFMTGEA 271 +A+ L+ N + +S +M GG LLI+W + N F TG A Sbjct: 306 VGIAAYLLNYVNDSSDISCEMPGGNLLIQWSSETNETFKTGPA 348 >gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] Length = 277 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 30/279 (10%) Query: 8 FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ N+ + TD +T D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG- 121 I N DGS ++CGNG+R + R+L R + ET I ++D I+VD+G Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122 Query: 122 -----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 EP L + K F I V+ ++SMGNPH I + ++D + Sbjct: 123 AHMLTEPYEPLSLKSDVTKYCKEIETSFGIWMVD--------MISMGNPHFIIYTDED-H 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 H G L ++ VN+ + V + L L T+ERG G T ACG+ A+V ++ Sbjct: 174 HTFYEEMGRLSKRY-----DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASA 228 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + N + V + GG L ++W N+H+ +G+ K Sbjct: 229 VVRRQVLPNEIIKVYLPGGILEVKWDLNDHLLASGKTTK 267 >gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56'] gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56'] Length = 265 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M+ ++V F K EG+GN ++++ +T++A L D +++I Q Sbjct: 1 MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQPR- 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS--- 115 +++ N DGS + CGNG+RCV +L SR +K+ T T G + R G Sbjct: 56 ----MQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG + L+ A + H F V +GNPHA+ F D Sbjct: 112 VLVGMGRARMGETLVVTALGAE-------------HRFA----CVDVGNPHAVTF---DP 151 Query: 176 YHYD-LASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAA 229 Y D + G ++A P +EG+N+ RV E +D+ WERGVG T ACG+ A Sbjct: 152 YTEDAIDELGPIVATTP--AEGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGA 209 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 CA A+ + + V + GG L I + + M G A++ + G++ I Sbjct: 210 CAVAAAACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEVVI 264 >gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] Length = 272 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 37/287 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASV 60 + F KM+G GN +VID + H ++++ + AL+ + D +M++ D + Sbjct: 3 IPFYKMQGAGNDFIVIDNQKLH--LSNEQLVALTKKICQRRLSVGSDALMVV-DVPQNTG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG+E + CGNG RC+ R+ + + ET+ G + A + + V Sbjct: 60 DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + EP ++ +P ++ + D +G NP G PH + D L Sbjct: 120 LNEPTVEQFDLP----YENISVDYIELG--------NP-----GLPHLVVRC-DALATEP 161 Query: 180 LASFGNL---LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA---S 232 LASF + L +G N+++ V + LRT+ERGV G T ACG+ A A S Sbjct: 162 LASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYS 221 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V G + T VS++ LGG L ++ + +F+ G+ EG + Sbjct: 222 LVKKGIVPSTT--VSLQTLGGVLQVQVQ-KDQLFLIGDTNIVVEGSI 265 >gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] Length = 271 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 27/285 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+++ A + + D + + + + + + Sbjct: 1 MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLERTAEGAFN--L 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDM 120 R+ N DGSE + GNG RCV +L + T T G + E + IS M Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179 G P +++P SFD V+ + V++GNPH + F + +D + Sbjct: 119 GVP----QVMP--HSFD-----------VDGVGNVQGVDVNVGNPHFVVFTDAEDFSSHG 161 Query: 180 LA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L+ G + HP F G N+ RV + ++ R +ERGVG T + G+ CAS AS Sbjct: 162 LSWEELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASI 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L ++ +GG + W + + +TG A+ G++ + Sbjct: 222 ALRGAGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSV 266 >gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] Length = 274 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 30/290 (10%) Query: 5 MVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ F KM G GN +++D R + + I AL D ++ + Q Sbjct: 2 LLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGGI 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118 +R N DG E + CGNG RC F + + K FET+ G++ A +DG+++V Sbjct: 62 VRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 ++ P + + D +G H ++ G PHA+ F+ D L Sbjct: 122 NLTNP---HSMQLFVLNADPT------VGADVHF-------LNTGVPHAVAFL-DKLEGL 164 Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D++ G L H FS +G N + AR+ S + +RT+ERGV T ACG+ A + Sbjct: 165 DISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALLH 224 Query: 237 GCLHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281 L + V + GG L + + F +TG A + G + I Sbjct: 225 AVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274 >gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] Length = 258 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 46/285 (16%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R N T D ++L+ + +D D Sbjct: 3 IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHEDQ--DFT 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ CGNG RC+V F + + S TFE I G+ A +DG + + M + Sbjct: 61 MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAY-IKDGLVHLKMQD 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + ++ +HLFL G+PH + +V +D+ HYD+ S Sbjct: 120 -------VSEIKEYE------------DHLFL------DTGSPHHVQWV-NDIEHYDVKS 153 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G L P++ + G N++ T+ E LRT+ERGV T +CG+ A A +A +H Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATT-EGFRLRTYERGVEDETLSCGTGATAVALA---IH 209 Query: 241 KTNR----AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEG 277 K + ++ +++ GG L IE+ ++F+ G A+K +EG Sbjct: 210 KQGKVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEG 254 >gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] Length = 317 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 27/284 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQDASVDA 62 F K G+GN LV CH ++ + N + + H+ D +++ D D +++ Sbjct: 33 FHKYHGLGNDYLV-----CHHSVAARLSNEQIRILCHPHYGIGSDGLLI--DSGD-NINP 84 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVD 119 +RIIN DGSE + GNG+R R+L R+ F T G + + + D + VD Sbjct: 85 TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVD 144 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG + +P D + + + + +VSMGNPH + V D Sbjct: 145 MGRANFNPAALPAL--IDLPEALNYPLALAEETLSVS--LVSMGNPHCVVPVT----RLD 196 Query: 180 LAS---FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 LA G + HP+F + N+ + V ++L + WERG G T A GS++CA+ Sbjct: 197 LAQVHRLGPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVM 256 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L++ + VSV+M GG L I + + HV M G K LD Sbjct: 257 RKLNRVDDNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300 >gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 332 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 22/268 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57 V K+ G GN ++D ++ AIN D +D ++++ + Sbjct: 3 VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + D Sbjct: 63 PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ D + + + + D I P L+ V++ N H I FV+ Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNQHLIAFVD 180 Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T ACG+A Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240 Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253 AS + LH+ N+ + V GG Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268 >gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] Length = 281 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 126/286 (44%), Gaps = 30/286 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F K+ G GN + ID R + ++S A D I A D Sbjct: 10 IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69 Query: 63 FIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 N DGS + CGN RC+ V+ + M+ T + I V E +D +++ Sbjct: 70 MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLISITVGDELQDATVT- 128 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 M +P L+ ++ +K + + H V+ G PH + F D+L Y Sbjct: 129 -MTDP--TNILLNVSLEVEK-ETQQVHF-------------VNTGVPHLVVF-HDNLIDY 170 Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ G LL H FS EGVN++ ++ S S+ +RT+ERGV T ACG+ CASV+ + Sbjct: 171 DIIPKGKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIA 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 L V V M +IE + NN V M G + G+L + Sbjct: 231 NQLGLVGTNVKV-MTASKEIIELNLNNGKVLMKGPVVHVYTGQLQL 275 >gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] Length = 267 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 30/284 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G GN +++D R + I L D ++++ Q + + Sbjct: 1 MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQSGA-NFR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 +R N DG E + CGNG RC RF R+ ++ +FET+ G + A + D ++ + M Sbjct: 60 MRYYNADGGEAEMCGNGARCFGRF-AQRVSGQAGDISFETMAGKITA-QFIDNNVRIQMS 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + L S D + V+ G PHA+ FV DDL D+ Sbjct: 118 EP----HSLRLNESLDSGGE------------VLTVHSVNTGVPHAVVFV-DDLEQVDVR 160 Query: 182 SFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 FG L H F+ +G N + + +++ +RT+ERGV T ACG+ A + L Sbjct: 161 RFGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHEL 220 Query: 240 HKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGK 278 V+VK+ GG L I + + V+ +TG A ++G+ Sbjct: 221 TGAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264 >gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] Length = 262 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 31/283 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G GN L+ D ++ A A D I++ AS D Sbjct: 1 MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS-VDM 120 + N DGS + CGNG+RC+ R+ R + ET G+ G S V+M Sbjct: 59 MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLEGGRASRVEM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178 G P P+A + H F+R VSMGNPHA+ F+ E+ + Sbjct: 119 GSPAFG---APVAL--------------LGHRFVR----VSMGNPHAVAFLPAEEAVERL 157 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL S G + + P F N+ V L +R WERG G T A GS +CA+ A+ Sbjct: 158 DLRSVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIR 217 Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279 V V + GG + +EW + + ++M G A+ EG+L Sbjct: 218 EGLARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260 >gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 286 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/275 (25%), Positives = 126/275 (45%), Gaps = 20/275 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + K G+GN L+ D +T ++I + + D +++ ++ + Sbjct: 3 ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLVGPVLGQDKLE--V 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE-NRDGS-ISVDM 120 +I+N DGSE + GNG+R ++L +++ F T+ G + N DG+ I V M Sbjct: 61 KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ IP+ ++ + G + + VS+GNPH + ++ D DL Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYRVT----CVSIGNPHCVIWLND--ISKDL 174 Query: 181 ASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 A + KH F E +N + +V ++++ +ERG G T A G++ CA+ A+ Sbjct: 175 AC---RIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 + T+ + V M GG L +E + V MTGE Sbjct: 232 YRMGLTDPKMYVHMPGGVLEVEIEKDGSVLMTGEV 266 >gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] Length = 271 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 34/282 (12%) Query: 8 FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID R G + + I L T D ++++ ++ D +R Sbjct: 7 FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSENH--DFAMR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DG CGNG RC+ +F +K FE A DG I ++M Sbjct: 65 YYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEIKLNM--- 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181 L+P K RD F + +F V G+PHAI +VE D+ + ++ Sbjct: 122 -----LVP------KDFRDAFSVDGHECVF------VDTGSPHAILYVENLDETHVVEIG 164 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + F G N++ ++ S E + +RT+ERGV T ACG+ A AS + S L Sbjct: 165 Q--KIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASALMSYRLG 222 Query: 241 KTN-RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279 K + ++V V + G LL D HV ++G A + ++G++ Sbjct: 223 KVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEV 264 >gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] Length = 289 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 42/235 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ +DG ++V M Sbjct: 71 FMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVHIAKDGDVTVGM 130 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+ +L + ++ RS+ V+MGNPHA+ FV+ Sbjct: 131 GKALLPEGDVTVSVGDRSWPARS-------------------VNMGNPHAVAFVD----- 166 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA GNL + P + GVN+ + +R ERG G T +CG+ ACA Sbjct: 167 -DLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGACAV 225 Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + A +V + GG L+I + + MTG A EG++D Sbjct: 226 AVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID 280 >gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] Length = 276 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 40/294 (13%) Query: 6 VDFAKMEGIGNKILVIDM------------RGCH--DNITSDAINALSTDDNTHFDQIML 51 V F K G GN L+I R C D + +D I L+ ++ H ++++ Sbjct: 3 VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPRVIM 62 Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 ++ DG+ CGNG RC + S +T G L A Sbjct: 63 T-------------LVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRT 109 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +G I+++MG P +P+ + D F + +V+ G PHA+ FV Sbjct: 110 DEG-ITIEMGTPTFAPDEVPV-----RADEQVFE----EEIEGLEVTMVNTGVPHAVAFV 159 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230 + D+ DL + + F G N+++A D RT+ERGV G T +CG+ A Sbjct: 160 D-DVDDVDLEAVAPRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAV 218 Query: 231 ASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A V + L +T+ V V GG L + ++D + + G + E++G++ +++ Sbjct: 219 AIAVVARRLGRTDADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272 >gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 268 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 56/294 (19%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F K +G GN +++D R I + L N HF D I+LI + D+ D Sbjct: 4 NFFKYQGTGNDFILLDDRT--KKIVKEY-TILKKLCNRHFGIGADGIILIQN--DSKSDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETI----RGILVAKENRDGS 115 +++ N DG E CGNG RC + F ++ K F I G+++ E D Sbjct: 59 YMQYYNSDGKESTMCGNGGRCAI-FFAKKLGINKENKIHFRAIDGHHYGLIIKNEKNDKC 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173 + ++ + + ++ I P H+FL + G+PH I FVE+ Sbjct: 118 L---------------VSINLINIQKNEIEIHP-EHVFL------NTGSPHHIIFVENIK 155 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 ++ Y+ + ++P +GVN++ + ++L +RT+ERGV T +CG+ AS Sbjct: 156 EINVYEEGK--KIRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTAS 213 Query: 233 VVASGCLHKTNRAVSVK-----MLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277 V+A+ ++TNR S++ +GG L + + + +++TG + ++G Sbjct: 214 VIAA---YETNRISSIEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQG 264 >gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] Length = 330 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 23/295 (7%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN--------ITSDAINALSTDDNTHFDQIM-LI 52 +S++V K G GN +++D N + D T D D ++ L Sbjct: 4 ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + Q + + +I DGS CGNG R + + ET G A + Sbjct: 64 INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATLSG 123 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D +I+++MG P+ + +PL DRD I + + V+ G PHA+ V Sbjct: 124 D-TITIEMGTPVFTPRCVPL-----TTDRDTALID--EQIGSLSITAVNTGVPHAVGMV- 174 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 DD+ L + F GVN+++A +T RT+ERGV T +CG+ A A Sbjct: 175 DDIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234 Query: 232 SVVASGC---LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + A C + T+ ++V+ GG L + + +TG ++E++ +L + T Sbjct: 235 -IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288 >gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 223 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 13/188 (6%) Query: 94 RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 ++ T G +V D + V+MGEP + +P +K ++ + Sbjct: 41 KRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF--RANKAEKTYIMRAAEQTIL 98 Query: 154 LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR 213 VVSMGNPH + V D++ + + G +L H F E N+ +V E + LR Sbjct: 99 C---GVVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLR 154 Query: 214 TWERGVGLTAACGSAACASV---VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTG 269 +ERG G T ACGS ACA+V + G L + V V++ GG L I W H ++MTG Sbjct: 155 VYERGAGETRACGSGACAAVAVGIQQGLLAEE---VRVELPGGRLDIAWKGPGHPLYMTG 211 Query: 270 EAKKEWEG 277 A ++G Sbjct: 212 PAAHIYDG 219 >gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 276 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63 + F+KM +GN ++++ +NI+ I LS D T FDQ++LI F Sbjct: 1 MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLS-DRYTGIGFDQLILIEFFCKKYFYFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I+I N D SE C NG+RCV FL + + I N S ++ Sbjct: 60 IKIFNSDSSESFQCINGIRCVFMFLKIKK-------LIKKNIAFIGNNLGLSKTLMTKNK 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYH 177 ++ K+ P +K + LR + V +GNPH I + ++ + Sbjct: 113 LICVKIKPPRFYIEKDILVNPKYNNKEKIILRIFKKKITCYFVFVGNPHCII-ISKNIEY 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + L K+ +F +N+SI + + + L+ +ERG G T +CGSAA A+ + Sbjct: 172 NNFSLLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAI 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 K N+ + V G L + W N + + G A ++GK++ Sbjct: 232 YYKKLNKKIKVNFSRGNLYVYWEKIGNFMSIIGPANHIYDGKIN 275 >gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] Length = 285 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 18/269 (6%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 + G+GN LV D H+ + D N + D N ++ +++ N Sbjct: 7 RYHGLGNDYLVFDPN--HNELKLDEANVKMLCDRNEGLGADGVLEGPILKEDGMHVKVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEPI 124 DGSE ++ GNG+R ++L S +++K+F T G + V N DGS + V MG+ Sbjct: 65 PDGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLA 181 IP+ +R + + +F R + VS+GNPH + + + + + Sbjct: 125 FWSDEIPVIG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLVC 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ F +N I +V E++ + +ERG G T A G+ ACA+ + L Sbjct: 177 KIGDYSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 TN V V M GG L +E D+ +V+MTG+ Sbjct: 237 TNSKVIVHMPGGELQVEVEDDWNVYMTGD 265 >gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 276 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 127/285 (44%), Gaps = 32/285 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F+K +GN +VID + ++ I A+ N HF D I+ + D S D Sbjct: 3 FSKYHALGNDYIVIDPKNLSGELSETDIRAIC---NRHFGVGSDGILCGPNESD-SCDFS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDM 120 ++I N D SE + GNG+R R+L S + FT ET G++ + +DG ++SV M Sbjct: 59 LKIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGM 118 Query: 121 G------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G E L+ + IP K+ F ++ ++GNPH + + DD Sbjct: 119 GKVRFTHESNLESEPIP---EIIKIKNREFTY-----------YLANVGNPHCVILL-DD 163 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +G+++ F N+ +V S+ + WERG G T A GS++ A+ Sbjct: 164 VTPSLAKEYGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAAS 223 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + V M GG + IE MTG +K EG++ Sbjct: 224 VVHALGLCKSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEI 268 >gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] Length = 277 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 119/288 (41%), Gaps = 36/288 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF------------DQIMLIHDFQ 56 K +G GN ++ID R DN I L N D ++LI + Sbjct: 4 TKYQGSGNDFIIIDNR---DNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKAR 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115 + N DGS + CGNG RC RF + + K FETI G + A Sbjct: 61 NTKNHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAH------ 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDD 174 I+D K + + + + I F V+ G PH + FV ED+ Sbjct: 115 --------IMDSKRVKVQLTPYHSHQKNIEIKTEYGTF--KGHFVNTGVPHFVIFVDEDE 164 Query: 175 LYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 L + D+ G + H F+ +G N++ T S +RT+ERGV G T ACG+ + A Sbjct: 165 LDNLDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAAC 224 Query: 233 VVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + L + V + G LL +N+ VF+ G K +EG L Sbjct: 225 GINAYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGML 272 >gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7] Length = 307 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 134/305 (43%), Gaps = 49/305 (16%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDA---------INALSTDDNTHF--DQIMLIHDFQ 56 F KM G+GN + +D G ++ A + + + +T D ++ I + Sbjct: 11 FTKMHGLGNDYIYMD--GFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFIQPSE 68 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKEN 111 +A+ + + N DGS CGNG+RC R+ +SF +T IR + + K + Sbjct: 69 EAAFR--MEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGIRSVYIRKTD 126 Query: 112 RD---GSISVDMGEPI-LDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNP 165 S+ VDMG L + + L + D F G PV + VS GN Sbjct: 127 EGEHITSVRVDMGVMANLGEQRVLLKAKEEWTD---FTGGSFPVQY--------VSAGNR 175 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-----TSLESLDLRTWERGVG 220 H IFFVE+ + + L L+ P +GVN+ A V T + + +R ERG G Sbjct: 176 HCIFFVEN-VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGSG 234 Query: 221 LTAACGSAACASVVAS----GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 T ACG+ ACA A+ C + N V ++ GG L + + + M G A+ +E Sbjct: 235 ETMACGTGACAVTAAAVWQGYCRYDEN--VEIRQPGGILTTAYLADGRMLMEGPAEYVFE 292 Query: 277 GKLDI 281 G DI Sbjct: 293 GYFDI 297 >gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] Length = 264 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 132/286 (46%), Gaps = 30/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++ + F+KM G GN +V D ++++D I +L T D ++LI A D Sbjct: 2 NTSIKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIE--PSARFD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 ++ N DG CGNG RC V F T + FE A NR + D Sbjct: 60 FAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFE-------ANGNRYDAWVCD- 111 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + K+I L F RD F ++ F V+ G+PH I F D+L +D+ Sbjct: 112 -NEAIRLKMI-LPHDF----RDEFGSNGLSCNF------VNTGSPHTIIFT-DELDTFDV 158 Query: 181 ASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 S G L+ +F EG N++ +VTS ESL +RT+ERGV T ACG+ A A+ + S Sbjct: 159 ESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMSYK 218 Query: 239 LHKTNRAVSVKMLGGG--LLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 L K + G L I++ D V+++G A + G + + Sbjct: 219 LGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSIQM 264 >gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 304 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 10/271 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K +GN L+ D + + + I L + N ++ +++ Sbjct: 25 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKL-CNRNYGIGADGIVEGPYKKEGKMYVK 83 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121 + N DGSE + GN +R +L + ++ +SF+ T G + + NR+G+ I + MG Sbjct: 84 VYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTMG 143 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + D + I L + + F+ G + VS+GNPH + + D++ + Sbjct: 144 QLSFDSEKIGLTGPKREALHEYFNFGGEEYACT----CVSVGNPHCVI-ITDEISRAKVC 198 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ A+ L Sbjct: 199 AIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLGL 258 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + V V GG L + +N +V M G K Sbjct: 259 IDSDVMVHTPGGKLWTQIDENFNVKMIGSVK 289 >gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] Length = 310 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 123/290 (42%), Gaps = 25/290 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + V F K G+GN +VID + +++D + + + +L F + D Sbjct: 22 KGGQVQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILFGPFAGSRGD 81 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK-ENRDGSIS 117 +RI N DGSE + GNG+R R+L F +T G++ A DG I+ Sbjct: 82 FGLRIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLIT 141 Query: 118 VDMGEPILDWKLIP--------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 VDMG + IP L + RD + G ++GNPH + Sbjct: 142 VDMGTVSFEAADIPVTGITGEVLNQPVCVKGRDLVYCG------------ATIGNPHCVV 189 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D++ G+ L P F N+ +V ++ + WERG G T A GS+A Sbjct: 190 LC-DEISDQMALELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSA 248 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AS + + ++++ V M GG L I D+ + +TG A K G L Sbjct: 249 SASAAVARRIGVCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGTL 298 >gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae] Length = 180 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 8/172 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 EP + ++P +K ++ + VVSMGNPH + V+D Sbjct: 121 EPNFEPSVVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQVDD 167 >gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 141 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I D +T FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPL 132 G P IP Sbjct: 121 GPPRFVPDEIPF 132 >gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] Length = 281 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 44/295 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDAS 59 M++F K++G GN +VID R ++TS ++ L+ + D ++++ + + Sbjct: 1 MLEFTKIQGNGNDFIVIDNR--EGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFET----IRGILVAKENRDG 114 +R+ N DGSE + CGNG RC+ R+ ++ + +FET I G++ A Sbjct: 59 FT--MRLFNNDGSEGEMCGNGARCIARYAWEKKIAGEKMSFETLAGPIHGVVTAP----- 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE- 172 + +DMGE L +S K++ + F PFV + +G PH + FV+ Sbjct: 112 FVELDMGETNLSQGF--WGQSL-KVEGETF------------PFVYLVVGVPHCVLFVDN 156 Query: 173 -DDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 +D H L G + F +G N++ + + +L + T+ERGV LT +CG+ + Sbjct: 157 LEDFSHDSLRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGS 216 Query: 230 CASVVASGCLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279 AS +A+ + + + V+ GG + + +++ + ++TG+ EG+L Sbjct: 217 TASAIAASIVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271 >gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 280 Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 29/258 (11%) Query: 5 MVDFAKMEGIGNKILVIDMR-GCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M+ FAK G GN ++I+ + G + D ++ A + D ++++ + + D Sbjct: 1 MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDM 120 ++R+ N DGSE + CGNG RC+ R+ + KS TFET G + A N + ++DM Sbjct: 59 FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPPWA-TIDM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVED--DLYH 177 GE +D G +N P+V +G PH + F D+ Sbjct: 118 GE----------------IDVSNLKEGKINAFGKEIPYVAFYVGVPHCVLFFPGFRDIPR 161 Query: 178 YDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 L S ++ K +F EG N++ A + + T+ERGV T +CG+ + A +A Sbjct: 162 DSLLSLARHIRRKGAIFDEGANVNFAERNK-DCIGAMTYERGVEDFTLSCGTGSIACCLA 220 Query: 236 SGCLHKTNRAVSVKMLGG 253 S L + A+ VK GG Sbjct: 221 SHLLFGSPLAMKVKNPGG 238 >gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] Length = 120 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + VED + ++ G +L +H F E N+ ++ +L LR +ERG G Sbjct: 1 MGNPHCVIQVED-IKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T ACGS ACA+V ++ V V + GG LLIEW + N ++MTG A ++G + Sbjct: 60 TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119 Query: 281 I 281 + Sbjct: 120 L 120 >gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 288 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 42/235 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R +L ++ T T G ++G I+V M Sbjct: 72 FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHLAKNGDITVSM 131 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G +L + + ++ RS+ RN V+MGNPHA+ FV DDL H Sbjct: 132 GRALLPGESVTVSVGDRSWPA----------------RN---VNMGNPHAVAFV-DDLDH 171 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 G+LL P+ + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 172 A-----GDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAV 226 Query: 233 VVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 227 AVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID 281 >gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 285 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 12/271 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + K G+GN L+ D +T +A+ + + D +++ + ++ + Sbjct: 3 ITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLVGPILGENKME--V 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDM 120 +I+N DGSE + GNG+R ++L +++ F T+ G + N +G+ I V M Sbjct: 61 KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G IP+ ++ + G + + VS+GNPH + ++ +D+ + Sbjct: 121 GHLSFWSDEIPMTGPRREVLNETLTFGSIPYRVT----CVSIGNPHCVIWL-NDISKDLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E VN + RV ++++ +ERG G T A G++ CA+ A+ + Sbjct: 176 CRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYKMG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 T+ + V M GG L +E ++ V MTG+ Sbjct: 236 LTDPKMYVHMPGGVLEVEIEEDVSVLMTGDV 266 >gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] Length = 300 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 42/235 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R +L ++ T T G ++G I+V M Sbjct: 84 FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHLAKNGDITVSM 143 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G +L + + ++ RS+ RN V+MGNPHA+ FV DDL H Sbjct: 144 GRALLPGESVTVSVGDRSWPA----------------RN---VNMGNPHAVAFV-DDLDH 183 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 G+LL P+ + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 184 A-----GDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAV 238 Query: 233 VVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 239 AVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID 293 >gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 280 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 10/271 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K +GN L+ D + + + I L + N ++ +++ Sbjct: 1 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKL-CNRNYGIGADGIVEGPYKKEGKMYVK 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121 + N DGSE + GN +R +L + ++ +SF+ T G + + NR+G+ I + MG Sbjct: 60 VYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + D + I L + + F+ G + VS+GNPH + + D++ + Sbjct: 120 QLSFDSEKIGLTGPKREALHEYFNFGGEEYACT----CVSVGNPHCVI-ITDEISRAKVC 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ + L Sbjct: 175 AIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + V V GG L + +N +V M G K Sbjct: 235 IDSDVMVHTPGGKLWTQIDENFNVKMIGSVK 265 >gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132] gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132] Length = 283 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 19/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R G + +D A+ D + + + + S+ Sbjct: 8 VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGN RC + + + F T G + AK DG Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDGP-----E 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E + +L P R+ + D P+ F G PH + FV DD+ D+ Sbjct: 123 EGRVKVQLTPPLRTETDIVID-VDGSPLTVHF------TDTGVPHTVVFV-DDVKSVDIM 174 Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + H F+ G N++ A+V +++ LRT+ERGV T ACG+ A A+ + + L Sbjct: 175 DLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLLAHTL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T + G +L + +N VF+ G A+ ++G+ +K Sbjct: 235 GLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277 >gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] Length = 278 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 46/296 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST------------DDNTHFDQIMLIH 53 +DFAK++G GN ++ID R D I L D ++LI Sbjct: 1 MDFAKLQGSGNDFILIDNR---DGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIE 57 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR 112 + +D + D + N DGSE + CGNG RC VRF + +FET+ G++ A E Sbjct: 58 EPEDNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRA-EVL 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +G V + +L P + +K R V L F ++ G PH + V+ Sbjct: 117 EGGKRVKV-------QLTPPSEPLEKTLR-------VEGTDLEGVF-INTGVPHFVVPVK 161 Query: 173 DDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230 D+ D+ G + H F +G N++ + +++ +RT+ERGV T ACG+ A Sbjct: 162 -DIDKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGAT 220 Query: 231 ASVVAS---GCLHKTNRAV---SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 A + + G + + V S ++LG +++ +N VF+ G K +EG L Sbjct: 221 AGAIVAYLKGLVSRKPVQVITKSEEVLG----VDFDENFREVFLNGAVYKVFEGTL 272 >gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] Length = 278 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 20/280 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI---HDFQDASVDAFI 64 F K G GN ++++ C + + A D D ++ + +F+ V + Sbjct: 5 FEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRV--IM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 ++ DGS + CGNG RC + R +T+ G AK + DG +++MG P Sbjct: 63 TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIH-DGGATIEMGAPE 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+A ++ +G + V+ G PHA+ FV DD+ +L Sbjct: 122 FGPNDVPVAGDEPLIET---RVGDYDVT------AVNTGVPHAVAFV-DDVTAVNLERDA 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + +F EG N++ A D RT+ERGV G T +CG+ A A A+ L T+ Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230 Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VSV GG L + D N +TG ++E+ G L + Sbjct: 231 GENVSVSPPGGDLEVTVDDRNAT-LTGPVEREFGGDLRVS 269 >gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2] gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2] Length = 276 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 127/293 (43%), Gaps = 42/293 (14%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V+F KM G GN +VID R ++ ++ D ++ + D + D Sbjct: 4 VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSE--KYDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 R N DG EV+ CGNG RCV RF + TFET+ G + A E + + V Sbjct: 62 GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISA-EVKGRMVKV--- 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 L+P R+ + D D P +L F V+ G PH + V DL + + Sbjct: 118 -------LLPAPRN-EATDVDL----PFLAGWLSCDF-VNTGVPHVVVQV-SDLEKHPVF 163 Query: 182 SFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L H FS EG N + + L +RT+ERGV G T ACG+ A AS + + Sbjct: 164 DQGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRR 223 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK--WIKKN 290 + V+V GG LI H+ GE D++TG W++ N Sbjct: 224 GSVSSPVTVHTQGGEELI-----IHLSSEGE---------DVRTGDRIWLQGN 262 >gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ] Length = 265 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 25/283 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60 S+ + F K G GN +V+D R + A+ D D ++ ++ + Sbjct: 4 SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSDE--Y 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + +N DG EV CGNG R + F + + F F+T G+ + + G I ++ Sbjct: 62 DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M + + + D D + ++ F + G PH ++F+ D L + Sbjct: 122 MTQ-------LSEINTIDVSDL----------ITSKDSFFMDTGVPHCVYFL-DSLDNIP 163 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 L +G + FSEG N + + L +RT+ERGV G T ACG+ A A A Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+K + + + GG L + + D V+++G+ +K + G ++ Sbjct: 224 LYKQIDHIKIDVPGGELEVLFEDGK-VYLSGKVEKIFSGVFEV 265 >gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] Length = 289 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 23/285 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K + +GN +++ R +T I A HF D I+L+ + A Sbjct: 3 FEKWQALGNDYAIVEQRDLPFELTPARIRAFCAG---HFGVFADGILLLSESDQPGFVAD 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++I N DGSE + GNG R + +L R F+ +T G + + VDMG Sbjct: 60 LKIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179 L K P D R + H + VS+GNP V+ + L D Sbjct: 120 RAKLTSKDFP-----SGPDDGRAQLTAGQHQWSFQ--HVSIGNPQCSIRVDSLEALDALD 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---- 235 L + G + H F N+S + + + R +ERGVG T + G+ A + VA Sbjct: 173 LPAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLR 232 Query: 236 -SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G V+V + GG L +E ++ HV +TG A + G L Sbjct: 233 GGGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTL 277 >gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] Length = 317 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 22/202 (10%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 D I++I A A +R+ N DGSE CGNG+RCV R++ R + ET++ L Sbjct: 41 DGILVI--LPSAVAHAKMRVFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASL 98 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDK-----MDRDRFHIGPVNHLFLRNPF-VV 160 K+ +++ G ++ P++ S +D + P+ + PF V Sbjct: 99 RVKKEE----TLNEGIETYAVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAV 154 Query: 161 SMGNPHAIFFVEDDL-----YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRT 214 S+ NPH I V ++L + A N ++ F +GVN+S VT +E + +RT Sbjct: 155 SVPNPHLIGIVPEELQKDTSHQQKWAQQFN--GENKYFPDGVNVSY--VTPVERGIFVRT 210 Query: 215 WERGVGLTAACGSAACASVVAS 236 +ERGVG T ACG+A AS + S Sbjct: 211 YERGVGFTNACGTAMTASALIS 232 >gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a] gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a] Length = 368 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 39/238 (16%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA----- 62 F K G GN +V+ +T+D + AL D T ++ A+V Sbjct: 9 FVKGHGTGNDFVVLPDPDGDLELTADLVRAL-CDRRTGVGADGVLRVVLSAAVPEVAPLA 67 Query: 63 -----FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 F+ N DGS + CGNG R R+L + + FT T G+ + + G Sbjct: 68 GAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAGD 127 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L + +RD +G VSMGNPHA+ F +D Sbjct: 128 VTVDMGPPRLSAGA---GSAVTVAERDFTAVG------------VSMGNPHAVCFADD-- 170 Query: 176 YHYDLASFGNL-LAKHPMFS-----EGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+ + +L L + P FS +GVN+ I V + +R +ERGVG TA+CG+ Sbjct: 171 --LDVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGT 225 >gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C] gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C] Length = 291 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 45/245 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L ++ T G+ ++ G ++V M Sbjct: 72 FMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVHLDKTGDVTVSM 131 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G +L + ++ RS+ RN V+MGNPHA+ FVE Sbjct: 132 GRALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVE----- 167 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 L GNL + P + GVN+ + +R ERG G T +CG+ ACA Sbjct: 168 -SLDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 226 Query: 233 VVAS-----GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 VA+ +T R VS V + GG L+I H + V MTG A G+ + Sbjct: 227 AVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE---AA 283 Query: 286 WIKKN 290 W+ + Sbjct: 284 WLTET 288 >gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653] gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653] Length = 303 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 40/245 (16%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFET---IRGILVAKENR 112 A + F+ N DGS + CGNG+R R+L + T T +R I +AK Sbjct: 68 AEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEEGDLTIATRAGLRHIHIAKAAP 127 Query: 113 DGS-----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 +G+ ++V MG+ +L + + DR RN ++MGNPHA Sbjct: 128 EGAPDSGAVTVGMGKAVLPEPGPDGDVTVEVGDRT---------WSARN---INMGNPHA 175 Query: 168 IFFVEDDLYHYDLASFGNLL---AKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLT 222 + FV+D L GNL A HP + +G N+ + + +R ERG G T Sbjct: 176 VAFVDD------LDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGET 229 Query: 223 AACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 +CG+ ACA +VA+ + AV +V + GG L+I + V MTG A Sbjct: 230 RSCGTGACAVMVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVA 289 Query: 276 EGKLD 280 EG+LD Sbjct: 290 EGELD 294 >gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 278 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 9/213 (4%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118 +++I N DGSE GNGM R+L +++ ++ T+ G + V N +G+ + + Sbjct: 49 YVKIYNPDGSEAPKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGTRVKI 108 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P IP+ +M G + ++ +S+GNPH + ++ +++ Sbjct: 109 SMGKPTFWSDEIPVTGERREMVNQTMVFGKIPYITT----CLSIGNPHCVIWM-NEISKE 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G P F E VN + V ++ + +ERG G T A GS ACA+ A+ Sbjct: 164 LVCRIGEHSENAPCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANR 223 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L +R + V M GG L +E ++ V+MTGE Sbjct: 224 LGLADRNMYVHMPGGILEVEIKEDGVVYMTGEV 256 >gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] Length = 288 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 32/236 (13%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR------------------KSFTFETIRGI 105 +R+ DG CGNG RC ++ R++R F +T G Sbjct: 63 MRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDTPAGE 122 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 A+ D +I ++MG P + +PLAR + + R+ V L + G P Sbjct: 123 RRARVGED-TIEIEMGVPSFEPADVPLARE-EPLIREDVEGWEVTAL--------NTGVP 172 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAA 224 HA+ FV DD+ DL + + +F EG N+++A S D RT+ERGV G T + Sbjct: 173 HAVVFV-DDVSTTDLGAMAPPIRHAEVFPEGANVNLAS-PSERGFDQRTFERGVEGETRS 230 Query: 225 CGSAACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ A A + VA VSV GG L + D+ ++G + E G++ Sbjct: 231 CGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286 >gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 267 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 53/293 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 +DF K +G GN +++D R I + + + HF D I+LI + D S D Sbjct: 3 MDFFKYQGTGNDFIILDNR--KKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD--GSISVD 119 +++ N DG E CGNG RC + F + + + KEN+ +I D Sbjct: 59 FYMKYYNSDGKESTMCGNGGRCAIAFS--------------KKLGIPKENKIYFRAIDGD 104 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHY 178 I + LI L +F +N + + +V ++ G+PH + FV +++ Sbjct: 105 HCGIIQERGLISL----------KFIDIEINMIKISKKYVFLNTGSPHHVLFV-NNIKEI 153 Query: 179 DLASFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D+ G + H +S GVN++ ++ +L +RT+ERGV T +CG+ ASV+A Sbjct: 154 DVCKQGRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLA 213 Query: 236 SGCLHKTNR-------AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277 + ++T R V + LGG L + + ++ +++TG + +EG Sbjct: 214 A---YETGRISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEG 263 >gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] Length = 276 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 29/262 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62 + KM+G GN +VID R N +S + L+ + D +M + D + + D Sbjct: 5 YTKMQGAGNDFIVIDNR--RYNFSSKQLAKLAAQVCQRKFSIGADALMAV-DHPEGTGDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ +++ ++ ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + FD+ DR + V+++ L +P G PHA+ L L Sbjct: 122 PPTV--------AKFDQPFADR-EVPVVDYIELGDP-----GIPHAVVKYPG-LQETSLD 166 Query: 182 SFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +L + F +G N++ S L +RT+ERGV G T ACG+ + A+ A Sbjct: 167 ALTDLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVA 226 Query: 238 CLHKTNRA-VSVKMLGGGLLIE 258 + +A + + +LGG L +E Sbjct: 227 RRREQTQANLVLHVLGGELRVE 248 >gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS] gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS] Length = 257 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 32/280 (11%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID R N+T + + A+ T D ++L+ + A D + N Sbjct: 1 MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLETSETA--DFRMNYHNA 58 Query: 70 DGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG CGNG RC V F + R K + FE A+ + S+ + M P D Sbjct: 59 DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-D 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGN 185 + RD G N F V G+PHAI +V ++L D L GN Sbjct: 118 F-------------RDGLQAGAWNCHF------VDTGSPHAIAYV-NNLDQLDVLTEGGN 157 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-TN 243 + +F +G N++ +T+ ++L +RT+ERGV T ACG+ A+ + S L K T+ Sbjct: 158 IRHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTS 217 Query: 244 RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 V VK+ G L+ + + +++ G A+ + G + + Sbjct: 218 SLVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257 >gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] Length = 274 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 120/291 (41%), Gaps = 31/291 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +V+ D S L T + D I+++ + S A I Sbjct: 5 LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVG--AERSDAARI 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R N DGS + CGNG RC R+ R ++ F T G L DG V M E Sbjct: 63 RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-- 179 P ++ RF V + P + +G PHA+ FV D H D Sbjct: 123 P----------------EQVRFDAMTVEAGEEQWPLHALWVGVPHAVVFVPDVERHSDEH 166 Query: 180 LASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 L + G L KH F G N++ V + RT+ERGV LT ACG+ A A+ Sbjct: 167 LTALGRALRYDDKH--FPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFV 224 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 L V + + GG L ++ D +++ G+A+ G L + W Sbjct: 225 VHTLLDRPWPVDLVVDGGRLTVDQRDGR-LWLIGDARIIARGTLSPEALAW 274 >gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] Length = 285 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 32/293 (10%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL---VAKENRDG 114 + D + +N DGS CGNG RC+ RF + + F+T G+ A EN Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRATTAPENNPS 124 Query: 115 SISV---DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + + D+ E D + L RS + +R G H + V Sbjct: 125 GVRLFVPDITEVRAD---VALDRSVPQA--------------VRRLCFAHAGTEHLVAVV 167 Query: 172 EDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 DDL + +G L + P + G N++ + + L LRT+E+GV T +CG+ Sbjct: 168 -DDLDAVPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGV 226 Query: 230 CASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 227 LAAAETAGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] Length = 329 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A V +++IN DGS CGNG+R V R+L + + F +T + L + Sbjct: 61 AGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTDQADLHVGR----VAT 116 Query: 118 VDMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P++ + + ++D+ PV + F V++ NPH I Sbjct: 117 IGNGLPTYQVEISPVSFNTKNLPMQIENQDKLFNAPVRDFDDQLLFSAVAVPNPHLIAID 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ L LA G+ L A +P F +GVN+S RV L ++T+ERGVG T ACG+ Sbjct: 177 NNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNACGTGM 236 Query: 230 CAS 232 A+ Sbjct: 237 SAT 239 >gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] Length = 250 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 42/281 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +G GN ++ID R + D D ++LI ++ D +R Sbjct: 3 FYKYQGTGNDFVMIDNR--SNTFQGDVAALCHRRFGIGADGLILIE--KEEGYDFRMRYF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN---RDGSISVDMGEPI 124 N DG+E CGNG RC V+F + GI K + DG ++ + Sbjct: 59 NADGAEGSMCGNGGRCAVQFASDL------------GIFEGKTSFIAVDGPHEAEITDKK 106 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + K+I + P+ + + ++ G+PH I F E+ + D+++ G Sbjct: 107 VSLKMI--------------DVHPLEEV--PEGYFLNTGSPHLIIFTEN-VDAIDVSTEG 149 Query: 185 NLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + ++ M GVN++ +V S S+ +RT+ERGV T +CG+ A+ + S + Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209 Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279 + V V+ LGG L +++ + V +TG A+K +EG+L Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250 >gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331] Length = 290 Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 110/242 (45%), Gaps = 43/242 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R R+L +R F + T GI A ++DG I Sbjct: 72 FMDYRNADGSVAEMCGNGVRVFARYL----QRAGFVADGDLAVATRGGIKRAHIDKDGDI 127 Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +V MG +L + + RS+D RN V+MGNPHA+ FVED Sbjct: 128 TVSMGRAVLPGSGVTVTVDGRSWDA----------------RN---VNMGNPHAVAFVED 168 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + DL S + ++ +GVN+ + +R ERG G T +CG+ ACA Sbjct: 169 LDHAGDLFSV-PPFSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGACAVA 227 Query: 234 VASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 VA+ + A +V + GG L+I H + + MTG A EG +D W Sbjct: 228 VAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDP---SW 284 Query: 287 IK 288 ++ Sbjct: 285 VE 286 >gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f] gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f] Length = 311 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 28/233 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L S T G+ G +SVDM Sbjct: 77 FMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPPAGDVSVDM 136 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P+ + R+ +G VSMGNPHA+ F DDL +L Sbjct: 137 GPPEFASGTVPVT----VVGREFAAVG------------VSMGNPHAVCF-ADDLGPSEL 179 Query: 181 ASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 A + P F +GVN+ + V S + + +R +ERGVG TA+CG+ ACA VA Sbjct: 180 ARLDLGVPVFPAEAFPDGVNVEVV-VPSADGVAMRVFERGVGETASCGTGACAVAVAWAA 238 Query: 239 LHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V V + GG L ++W + V + G A +G L +WI++ Sbjct: 239 RVGGTPPSEVLVDLPGGRLTVDWRETT-VILRGPAVLVSDGVLRP---EWIRQ 287 >gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] Length = 288 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 123/276 (44%), Gaps = 11/276 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G+GN LV R + ++++ I L +LI D D ++ +RII Sbjct: 6 FHKYHGLGNDYLVCH-RDVAEQLSNEHIQMLCHRHYGVGSDGLLI-DSGD-QINPTLRII 62 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPI 124 N DGSE + GNG+R R+L R+ + F T G + + D ISVDMG Sbjct: 63 NPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMGRAN 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +P + + P+ L + +VSMGNPH + V D L + G Sbjct: 123 FNPAALPALVNLPEAVNYPL---PLADETL-SVVLVSMGNPHCVVLV-DKLDLAQVHRLG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + H +F + N+ V +L + WERG G T A GS++CA+ A L K + Sbjct: 178 PQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGKVDD 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V M GG L I + + V M G K LD Sbjct: 238 RVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] Length = 284 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 28/259 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+K G GN ++ID R + + SD L D ++L+ + D Sbjct: 16 IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLE--RSDRADFV 73 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG+E + CGNG+RC+ +FL ++ FT E + + DGS+SV M Sbjct: 74 MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133 Query: 123 -PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + W I L+ + R FH+ + G PHA VE L +DL Sbjct: 134 APEISWD-IELS-----IGRKTFHVD-----------FLDTGVPHATLSVE-KLSAFDLD 175 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLES--LDLRTWERGVGL-TAACGSAACASVVASG 237 + G + H F +G N+ + + + + +RT+ERGV T ACG+ A A + + Sbjct: 176 AIGPKIRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAW 235 Query: 238 CLHKTNRAVSVKMLGGGLL 256 + + +++ G +L Sbjct: 236 TKEQIANPIRIQVASGDIL 254 >gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5] gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5] Length = 279 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 46/296 (15%) Query: 6 VDFAKMEGIGNKILVID-----------MRGCHDNITSDAINALSTDDNTHFDQIMLIHD 54 ++F K++G GN +VID RG + A T D ++LI + Sbjct: 1 MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHT--GVGADGLILIKN 58 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRD 113 + D N DGS + CGNG RC VRF R + FET+ G++ A+ + Sbjct: 59 PDNPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYEN 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G + +L P ++ +K +D + IG ++ G PH + Sbjct: 119 GRK--------VKVQLTPPSKPEEKTLTVDGEEV-IG----------VFINTGVPHFVVP 159 Query: 171 VEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 VED + ++ G + H F +G N++ + S +++ +RT+ERGV T ACG+ Sbjct: 160 VED-VEKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTG 218 Query: 229 ACASVVAS---GCLHKTNRAVSVKMLGGGLL-IEW-HDNNHVFMTGEAKKEWEGKL 279 A A + S G + K + V+V G +L I++ D VF+TG K +EG+L Sbjct: 219 ATACAIVSYLKGLVKK--KPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRL 272 >gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029] gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029] gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN] Length = 257 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 17/216 (7%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N DGS CGNG+RC + L S+ + + T G+ + VDM Sbjct: 56 DAQLIIFNSDGSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + DW+ + R P+ + + G PHA+ + ++ DL Sbjct: 116 --TLADWR--------ASVHRLESRPDPLP----KEVVCIHTGVPHAVVILP-EISTLDL 160 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L H FS +GVN++ ++ L +RT+ERGV G TAACG+ A AS + Sbjct: 161 SILGPFLRYHQTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSN 220 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ + GG L+ + V++ G ++ Sbjct: 221 SYGWKESIQIHTWGGELMTVSQNRGRVYLQGSVTRD 256 >gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] Length = 261 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 17/216 (7%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N DGS CGNG+RC + L S+ + + T G+ + VDM Sbjct: 60 DAQLIIFNSDGSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + DW+ + R P+ + + G PHA+ + ++ DL Sbjct: 120 --TLADWR--------ASVHRLESRPDPLP----KEVVCIHTGVPHAVVILP-EISTLDL 164 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L H FS +GVN++ ++ L +RT+ERGV G TAACG+ A AS + Sbjct: 165 SILGPFLRYHQTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSN 224 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ + GG L+ + V++ G ++ Sbjct: 225 SYGWKESIQIHTWGGELMTVSQNRGRVYLQGSVTRD 260 >gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] Length = 279 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 14/271 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63 MV K G+GN L+ D + + I L + D I+ ++ + Sbjct: 1 MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGILSGPVLENEKIK-- 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVD 119 +RI N DGSE + GNG+R ++L +K K + T G + V + D S + VD Sbjct: 59 VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118 Query: 120 MGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG I + D ++ F N VSMGNP+ + +E+ + Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFFCDN-----FYNITCVSMGNPNCVVMMEEISKNK 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + F +N+ + V E++ + +ERG G T A G+ ACA+ A+ Sbjct: 174 AL-HLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHK 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 L V V M GG LL+E+ +++ VFMTG Sbjct: 233 LGLVGNRVQVHMQGGDLLVEFAEDDRVFMTG 263 >gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] Length = 1364 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 15/230 (6%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK-ENRDGSI- 116 DA + + + DG+ + GN +R V ++L ++ K+K + ET G+ + +RDG I Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200 Query: 117 SVD--MGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 SV+ +G P D +P+ + D + + G F +S+G+P + Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYSCGG----FDDQITCLSLGDPQCVILT- 1255 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD +L G L+ + +F EG N+S V +L +RTWER +G T +CG++ CA+ Sbjct: 1256 DDCDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAA 1315 Query: 233 VVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + L + +SVK GG L++ +F+ G ++EG +++ Sbjct: 1316 AVVAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIEM 1364 >gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8] gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8] Length = 285 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 32/293 (10%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFET----IRGILVAKENRD 113 + D + +N DGS CGNG RC+ RF + + F+T R V ++N Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRATTVPEDNPS 124 Query: 114 GS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 G D+ E D + L RS + +R G H + V Sbjct: 125 GVRLFVPDVTEVRAD---VALDRSVPQA--------------VRRLCFAHAGTEHLVAVV 167 Query: 172 EDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 DDL + +G L + P + G N++ + + L LRT+E+GV T +CG+ Sbjct: 168 -DDLDAVPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGV 226 Query: 230 CASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 227 LAAAETAGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864] Length = 376 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/301 (27%), Positives = 130/301 (43%), Gaps = 77/301 (25%) Query: 47 DQIMLIHDFQDASVDA---------FIRIINCDGSEVQSCGNGMRCVVRF---------- 87 DQ+++I Q +DA ++I N DGSE +CGN RCV + Sbjct: 59 DQLLVIA-AQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDA 117 Query: 88 ----------------LTSRMKR------KSFTFETIRGILVAKEN-RDGSISVDMGEPI 124 SR R +S +TI +A++ ++ ++ VDMG P Sbjct: 118 RREQVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPE 177 Query: 125 LDWKLIPLAR------SFDKMDRDRFHIGP--VNHLFLRNPFVVSMGNPHAIFFV--EDD 174 +W IPL+R + D + P V L R V MGNPH +F + E+ Sbjct: 178 FEWTRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARG-VAVGMGNPHLVFLLPSEEQ 236 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----------LDLRTWERGVGLTAA 224 L D+ + G+ L + +F +GVN++ A + + + + WERG G T A Sbjct: 237 LNQIDVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLA 296 Query: 225 CGSAACASVVA---SGCL---------HKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEA 271 CGSAACA + A +G L + N++V SV+M GG L + + + G + Sbjct: 297 CGSAACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPS 356 Query: 272 K 272 + Sbjct: 357 R 357 >gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 172 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 12/161 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID D DA A D FDQ++++ + VD R Sbjct: 6 FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 65 IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124 Query: 124 ILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNP 157 IP + D + I PV+ + + NP Sbjct: 125 KFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCVNMGNP 165 >gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula] Length = 221 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R I+S+ A+ + D ++ + D + Sbjct: 73 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGIDGT 132 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F L S R SFT T G +V + DG++ Sbjct: 133 -DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191 Query: 117 SVDMGEPILDWKLIPLARSFDKM 139 VDMGEP+L +P S +K+ Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214 >gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] Length = 269 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/281 (27%), Positives = 114/281 (40%), Gaps = 25/281 (8%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K +G GN L+ D G + A D + F LI +D + + N Sbjct: 5 KYQGCGNDFLIAD--GSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP---LSMELWNQ 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DG+ CGNG+RC V RK + + R + + S+ + EP + Sbjct: 60 DGTRAGMCGNGLRCFVH----HAYRKGW-IQADRSYRIGTGDGLRSVWICSTEPFI---- 110 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-------MGNPHAIFFVEDDLYHYDLAS 182 + D R P+ L PF+ +G PH + F D A Sbjct: 111 CRVEAGIPDFDAKRMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTDP--EVVSAE 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + +HP F EG N+ AR+ L +RTWERGVG T ACG+ ACAS VA+ Sbjct: 169 QARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGLC 228 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V+ GG L +E + +TG + + GK ++K Sbjct: 229 PLPCKVRCPGGLLDVEQAPDKQCLLTGPSV--YIGKAEVKA 267 >gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 275 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 42/265 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVD 61 M +AK+ G GN LV+D+RG A A + +++ D ++L+ + ++ Sbjct: 1 MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVE--SSSRLN 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKEN----RDGSI 116 +R+ N DGSE + CGNG RC+ R+ + + FET+ G + A+ + R Sbjct: 59 FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPFVRLRLA 118 Query: 117 SVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 VD+G+ + K LA SF +++G PH + F+E Sbjct: 119 EVDLGDATWERKTSAGGQELAYSF-----------------------LTVGVPHCVVFLE 155 Query: 173 D--DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 D +L G L + +F G N++ E L L T+ERGV LT +CG+ Sbjct: 156 DLATRPREELFRLGRELRGRTDLFPRGTNVNFL-APEKEGLFLITYERGVEDLTRSCGTG 214 Query: 229 ACASVVASGCLHKTNRAVSVKMLGG 253 + A+ V + L + V V+ LGG Sbjct: 215 SVAAAVTARRLGRCGDDVKVRNLGG 239 >gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 279 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 33/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R D A+ + D ++LI + ++A D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSEEA--DF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG RC RF + + R+ F T G L+ E ++ + M Sbjct: 63 SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAG-LIEAEISGTAVLLTM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P R H+ GP + V G PHA+ F D++ Sbjct: 122 TPP--------------GQCRLNLHLAGPTGEELTLH--TVDTGVPHAVLFC-DEIATVP 164 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +G+ HP F+ G N++ + L +RT+ERGV T ACG+ A A+ + + Sbjct: 165 VKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVAS 224 Query: 238 CLHKTNRAVSVKMLGG-GLLIEWHDNNHVF----MTGEAKKEWEGKL 279 L + +V GG L+I + D++ F + G A ++G L Sbjct: 225 RLGRAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSL 271 >gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 111/257 (43%), Gaps = 50/257 (19%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE------- 110 F+ N DGS + CGNG+R R+L ++ T +R + +AK+ Sbjct: 73 FMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRVHIAKDVGDAAQP 132 Query: 111 -----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 DG I+V MGE L P A + + RN V+MGNP Sbjct: 133 GEATAGPDGPITVVMGEATLPGPG-PEAEMTVTVGEQSWP--------ARN---VNMGNP 180 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVG 220 HA+ FV+ DLA G+LLA + + G N+ + +R ERG G Sbjct: 181 HAVAFVD------DLAQAGDLLAAPAVRPASAYPHGTNVEFVVDRGPRHVAMRVHERGSG 234 Query: 221 LTAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKK 273 T +CG+ ACA +VA+ + AV +V + GG L+I + V MTG A Sbjct: 235 ETRSCGTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTGPAVI 294 Query: 274 EWEGKLDIKTGKWIKKN 290 EG+LD W++ + Sbjct: 295 VAEGELDP---AWLRTD 308 >gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] Length = 283 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R + +D A + D + + D + +D Sbjct: 8 VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGN RC + + + F T G + AK DG D G Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGP---DAG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +L P + D + H G PHA+ + DD+ ++ Sbjct: 125 R--VKVQLTPPKGLETNISLDVDNTPMTVHF-------ADTGVPHAVV-LVDDVAAVNVR 174 Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L HP F+ G N++ A+V ++ LRT+ERGV T ACG+ ACA+ + + L Sbjct: 175 ELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLVANAL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T+ + GG +L + +NN +F+ G A+ ++G+L Sbjct: 235 GLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGEL 274 >gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] Length = 281 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 43/293 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN +++D R T+ A F D ++LI + ++A D Sbjct: 5 ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESKEA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG RC RF R + F T+ GI+ A E ++ + M Sbjct: 63 FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEA-EITGTNVGLTM 121 Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P LD +L A + HL V+ G PHA+ V DD+ Sbjct: 122 TPPENLQLDLRLDDPAGGEQTV-----------HL-------VNTGVPHAVLLV-DDIDV 162 Query: 178 YDLASFGNLLAKHPMFSE-GVNLS-IARVTSLESL-DLRTWERGV-GLTAACGSAACASV 233 + +G HP F+ G N++ + R T+ L +RT+ERGV T ACG+ A A+ Sbjct: 163 VPVKEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAA 222 Query: 234 VASGCLHKTNRAVSVKMLGGG---LLIEWH----DNNHVFMTGEAKKEWEGKL 279 + + CL T A +++ G L+I +H D V + G A +EG+L Sbjct: 223 LVASCLDLT--AAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273 >gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 123 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG 220 MG H++ FV +D YD+ G + + +F + VN++ +V + +++ TWERG G Sbjct: 1 MGTDHSVIFV-NDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAG 59 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 T ACG+ A AS V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 60 RTLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117 >gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] Length = 278 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 127/294 (43%), Gaps = 46/294 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD------------DNTHFDQIMLIHDF 55 F+K+ GN +V+D R D +N L D D ++LI Sbjct: 3 FSKLHASGNDFVVLDNR---DGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESP 59 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG 114 D + N DGS + CGNG RC VRF R + + FET+ GI+ A+ G Sbjct: 60 DDPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKG 119 Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V + +P D++ + L V L F ++ G PH + VE Sbjct: 120 RRVKVLLTKP-KDYRDVTL---------------DVKGTRLEGSF-INTGVPHFVVRVE- 161 Query: 174 DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 ++ D+ S G + HP F +G N++ +V + +RT+ERGV G T ACG+ A A Sbjct: 162 EIDSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATA 221 Query: 232 SVVAS---GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKL 279 + S G + + V K GG L+ H D V++ G ++G+L Sbjct: 222 CAIVSYLKGWVKGSPVDVFTK---GGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272 >gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] Length = 277 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 41/291 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------ALSTDDNTHFDQIMLIHDFQ 56 + F KM G GN ++I+ R NI + ++ + D ++LI + Sbjct: 4 IPFFKMNGSGNDFIIINNR---RNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--K 58 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS 115 D D R N DGSE + CGNG RC RF + + S F T+ G++ A+ + Sbjct: 59 DNEYDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNT 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V + +P D+K + ++ D + P++ ++ G PHA++FV Sbjct: 119 VRVQLTQP-KDYK--------ENIELDGVDM-PLSF--------INTGVPHAVYFVSSVD 160 Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 D+ + G H F+ EG N++ V + +L +RT+ERGV T ACG+ A AS Sbjct: 161 -VVDVKTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASA 219 Query: 234 VASGCLHKTNRAVSVKMLGGGLL-----IEWHDNNHVFMTGEAKKEWEGKL 279 + + K V V G L IE + V++ G+A + G + Sbjct: 220 LIAILKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270 >gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] Length = 270 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 127/289 (43%), Gaps = 45/289 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 FAK EG GN +++D+R S I L + HF D +M + + D Sbjct: 5 FAKYEGAGNDFILLDLRNGGATPQSAEIARLC---DRHFGIGADGLMTLAASAVSGCDCS 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R N DGS + CGNG RC F + +KR F++ GI A+ R + Sbjct: 62 MRYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKR----FDSTDGIHEARMLR-----I 112 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D ++ +I + R D+ D + FL G PH + F DDL Sbjct: 113 DGLRSTVELGMIDVER-IDRGD---------GYWFL------DTGVPHYVEFT-DDLEAV 155 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA-CASVVAS 236 D+ G + F++G N++ +V + +RT+ERGV T ACG+ + A++V Sbjct: 156 DVIGRGRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTH 215 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLD 280 + A + + GG L I + + + ++GEA+K +EG D Sbjct: 216 LAAQPSVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264 >gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14] gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] Length = 269 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 19/213 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N DGSE CGNG+RCV+ + + + + ET+RG+ K + VDM Sbjct: 56 DAKLTIFNSDGSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +LDWK K + H+ P F + G PH + FV D+ + Sbjct: 116 T--LLDWK---------KTKKTLTHVLPG---MPEEVFFIDTGVPHVVVFV-PDVNKVPV 160 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238 +G L H F GVN+ + ++L + T+ERG T +CG+ AS + + Sbjct: 161 QEWGAFLRYHEDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAAD 220 Query: 239 LHKTNRAVSVKML--GGGLLIEWHDNNHVFMTG 269 + + S+ + G ++ + +N VF+ G Sbjct: 221 VFSLEQDFSLLVCSRSGNIVKIFSENGKVFLEG 253 >gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58] gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58] Length = 276 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 26/243 (10%) Query: 43 NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102 H D + + Q A DA + I N DGS CGNG+RC + +L ++++ T T Sbjct: 41 QAHVDGFLYLEPSQIA--DAKLAIFNADGSRPTMCGNGLRCAIAYLAQKLEKPQITIATD 98 Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 +G+ + VDM P +W +F + +G V F+ Sbjct: 99 QGVYSGVYFSWERVLVDMTLP--EW-------NFSSHEIVLSGLGKVQVFFIHT------ 143 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL 221 G PH + F ++ D+A G L H F+ G N++ + S + L +RT+ERG+ Sbjct: 144 GVPHLVVFC-PEIASIDVAVLGRELRYHTTFAPSGANVNFVEIFSEQQLRIRTYERGLER 202 Query: 222 -TAACGSAACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +AACG+ A+V + G + + V V + IE +++ G E G Sbjct: 203 ESAACGTGCIAAVKTALFRGFVKQGEVIVHVSQESMKVFIE---GERIYLEGPVTIESSG 259 Query: 278 KLD 280 +L+ Sbjct: 260 RLE 262 >gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 292 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 20/271 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIRII 67 K G+GN V D +T + + + D N D I+ FQ+ + ++++ Sbjct: 8 KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKI--YVKVW 64 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123 N DGSE + GNG R ++L +++K TF T+ G I V N DGS + G+ Sbjct: 65 NPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKL 124 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDL 180 IP+ +R + + +F R + VS+GNPH + + + + + Sbjct: 125 SFWSDEIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ F +N + +V E++ + +ERGVG T A GS ACA+ + L Sbjct: 177 CKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLG 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 TN V+V M GG L +E D+ VF TGE Sbjct: 237 MTNPGVTVHMPGGKLQVEIQDDWEVFATGEV 267 >gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 295 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 39/236 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGS-- 115 F+ N DGS + CGNG+R R+L S T ++ + +A + DG+ Sbjct: 79 FMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELAVATRGGVKRVRIAADAPDGTPG 138 Query: 116 -ISVDMGE---PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMG P D + + RS+ ++ V+MGNPHA+ F Sbjct: 139 DVTVDMGRAAFPGPDGVTVTVDGRSWPALN-------------------VNMGNPHAVAF 179 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VE DL H A + +GVN+ + +R ERG G T +CG+ AC Sbjct: 180 VE-DLAHAGHLYEAPATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGAC 238 Query: 231 ASVVAS-----GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A VA+ T AV +V + GG L+IE + + MTG A EG L Sbjct: 239 AVAVAAIRRDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294 >gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175] Length = 248 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 27/170 (15%) Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 CGNG+R V R+L + ET++ IL K + S+ D+ P ++ P+ + Sbjct: 1 CGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGFDI--PTYQVEISPVKFAA 56 Query: 137 DKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVEDDLYHYD----LA 181 + + H+G V LF N + VS+ NPH I FV+ + D LA Sbjct: 57 ETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLA 110 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 S+ N +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 111 SYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSA 158 >gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 291 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 20/271 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIRII 67 K G+GN V D +T + + + D N D I+ FQ+ + ++++ Sbjct: 7 KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKI--YVKVW 63 Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123 N DGSE + GNG R ++L +++K TF T+ G I V N DGS + G+ Sbjct: 64 NPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKL 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDL 180 IP+ +R + + +F R + VS+GNPH + + + + + Sbjct: 124 SFWSDEIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ F +N + +V E++ + +ERGVG T A GS ACA+ + L Sbjct: 176 CKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 TN V+V M GG L +E D+ VF TGE Sbjct: 236 MTNPGVTVHMPGGKLQVEIQDDWEVFATGEV 266 >gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 120/290 (41%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D D + I D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDGP-LMDAARARRICDRRR--GVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG----- 114 A + I N DGS CGNG+RCV R L +R +T G +R Sbjct: 59 TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVE 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG L+ + F +G LR VSMGNPHA+ F D Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAACAS 232 + G L + + GVN+ AR +DL WERG GLT G+ A A Sbjct: 160 PERARALAVGPALER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 S L + V V++ GG L I D V M G A++ + G+ D+ Sbjct: 217 AAVSRGLARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c] gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c] Length = 277 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 36/291 (12%) Query: 6 VDFAKMEGIGNKILVID----------MRGCHDNITSDAINALSTDDNTHFDQIMLIHDF 55 + F K+ G GN L+ID M+G + D + D ++ + Sbjct: 8 IPFCKLHGNGNDFLLIDELEGTRIPDQMKGEFAELYCDRRFGVGADG------VLFLSAG 61 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG 114 + D +RI D SE + CGNG+RC R+ + ++ ET G+L + Sbjct: 62 TEG--DLRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGD 119 Query: 115 SI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 S + M +P D IP + + + G H + G PHA+ V Sbjct: 120 STFLAQIHMPDPAFDCPGIP---ATGEGVYQQTIAGLTVH-------ATNTGVPHAVVIV 169 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230 DDL D+ + HP F +G N++ +VT +++ +RT+ERGV T CG+ A Sbjct: 170 -DDLAAVDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGAT 228 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS + L V+V+ GG L I M G A + G++ + Sbjct: 229 ASAAVAHRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277 >gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922] gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922] Length = 260 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 62/296 (20%) Query: 8 FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54 F K +G GN +++D R CH N A D ++L+ + Sbjct: 5 FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGA------------DGLILLQN 52 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD 113 D +R N DG E CGNG RC+ +F + ++ TFE I G+ A Sbjct: 53 --SNPYDFRMRYFNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRA----- 105 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + P + + +D D+ + P +H FL + G+PH + FV Sbjct: 106 --------------VVHPTYVALEMIDVDKVEVYP-SHYFL------NTGSPHHVQFVA- 143 Query: 174 DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 D+ D+ G + P F +G N++ V ++L +RT+ERGV T ACG+ A Sbjct: 144 DVQKIDVQKEGAKIRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTA 203 Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + +A+ K ++ + VK +GG L +++ N V++ G A+ +EG + ++ Sbjct: 204 AAIAAYSAGKVSQLPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLE 259 >gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT] gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT] Length = 279 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 43/286 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------- 55 + ++F K+ G GN ++ID + + I D+ + +I+ +F Sbjct: 2 NQLEFVKLHGNGNDFILID------ELNGERI---PEDEKSEASRILCHRNFGIGGDGVL 52 Query: 56 ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKEN 111 D +R+ DGSE + CGNG+RC+ + S + F+ ET+ G++ + Sbjct: 53 FLVPSERADIGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVR 112 Query: 112 RDGS---ISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 RD V+MG P + IP +F K+ F + VN G PH Sbjct: 113 RDRKGFWARVEMGIPRFERSEIPADGEGTFLKVPLHGFEVSAVN-----------TGVPH 161 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225 A+ FVE+ + + F EG N++ R+ + L++RT+ERGV T +C Sbjct: 162 AVIFVEN--LDIPVEQIAPKIRHSSCFPEGANVNFVRLGN--HLEVRTFERGVEAETLSC 217 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G+ + A+ + L V V GG L I + FM G A Sbjct: 218 GTGSVAAAAVARRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPA 262 >gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 289 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 45/243 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ +DG ++V M Sbjct: 71 FMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVHIAKDGDVTVGM 130 Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+ L + ++ RS+ RN V+MGNPHA+ FV+ Sbjct: 131 GKAFLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA G+LLA P + +GVN+ + + +R ERG G T +CG+ ACA Sbjct: 167 -DLAHAGDLLAPPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGACAV 225 Query: 233 VV-------ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 V A + T +V + GG L+I + + MTG A EG++D + Sbjct: 226 AVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID---AE 282 Query: 286 WIK 288 W++ Sbjct: 283 WLE 285 >gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K] gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K] Length = 266 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 119/293 (40%), Gaps = 40/293 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDNTHFDQIMLIHDFQD 57 M+ + F K G+GN +V+D DA D ++ + + Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVD------GPLMDAERARRICDRRRGVGADGVLTVLPPRT 55 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG-- 114 A A + I N DGS CGNG+RCV R L +R +T G +R Sbjct: 56 AGATATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADR 115 Query: 115 ---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++SV+MG L+ + F +G LR VSMGNPHA+ F Sbjct: 116 AVEAVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF- 157 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAA 229 D + G L + + GVN+ AR +DL WERG GLT G+ A Sbjct: 158 -DAPERARALAVGPELER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACA 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 A S L + V V++ GG L I D V M G A++ + G+ D+ Sbjct: 214 AAVAAVSRGLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] Length = 266 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 87/291 (29%), Positives = 123/291 (42%), Gaps = 36/291 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M + F K G+GN +V+D + D ++ + + + Sbjct: 2 MHGVPLSFVKYHGLGNDFIVVDGPLMDPDRAR---RLCDRRRGIGADGVLTVLPPRTSGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRG-----ILVAKENRDG 114 A + I N DGS CGNG+RCV R L +R + +T G + Sbjct: 59 AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGLSGALVIDTDSGPKRCVVHRTPAGVPS 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG P A D + G +R VSMGNPHA+ F D Sbjct: 119 AVSVEMG---------PAAVQGD----EELRAGGETVRAVR----VSMGNPHAVLF--DT 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 ++ G LL + GVN+ AR +DL WERG GLT ACG+ ACA+ V Sbjct: 160 PTRERASAIGPLLER--AVPGGVNVGFAR-PGPHGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 AS G + K V V++ GG L I D V M G A + + G+ D+ Sbjct: 217 ASVRAGAV-KAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266 >gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49] gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49] Length = 257 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 79/281 (28%), Positives = 126/281 (44%), Gaps = 40/281 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F K +G GN ++ID R + AL D LI DA++D + Sbjct: 4 NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLENDATLDFKMVY 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG+E CGNG RC+V F + + TF+ I G A DG +S+ M Sbjct: 64 YNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG-VSLKM----- 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +D D ++ L N ++ G+PH + VE +L ++++ + G Sbjct: 118 -------------IDVDDVNV-------LENYMFLNTGSPHHVQLVE-NLKNFEVFTQGK 156 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 + EG N++ S ++ +RT+ERGV T +CG+ A +A LHKTN+ Sbjct: 157 EIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIA---LHKTNK 213 Query: 245 AVSVK---MLGGGLL---IEWHDN--NHVFMTGEAKKEWEG 277 + M GGLL ++ D ++VF+ G A ++G Sbjct: 214 LKENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKG 254 >gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 37/285 (12%) Query: 8 FAKMEGIGNKILVIDMRGCH-----DNIT-SDAINAL-STDDNTHFDQIMLIHDFQDASV 60 F+K++G GN ++ID R DN+ A+ + D ++LI + + A Sbjct: 5 FSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA-- 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DGS + CGNG RCV RF + + + FET+ GI+ A+ N ++ V Sbjct: 63 DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVNVS-TVKVK 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + +P D KL ++ V+ F ++ G PH + FV D + + Sbjct: 122 LTKP-HDLKL-------------NLNVEGVSGHF------INTGVPHFVVFV-DRIEDVN 160 Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + +F G N++ L+ + +RT+ERGV T ACG+ + AS + SG Sbjct: 161 VREVGRKIRFSELFQPSGTNVNFVE-AQLDKIFVRTYERGVEDETLACGTGSVASALISG 219 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLD 280 + K N + V L + D N VF+ G ++G L+ Sbjct: 220 KVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264 >gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] Length = 288 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 117/283 (41%), Gaps = 27/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 V F KM+G GN + +D R D + A + I L H + A Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGAD---GMIFLDHAPEGA 67 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-I 116 + N DGS + CGNG RC R + S F T G + A + D + + Sbjct: 68 GLAYIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPIEAAVDPDSNLV 127 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V + P K + L + R H + L + V+ G PHA+ FV D+L Sbjct: 128 TVRLTSP----KDLRLNIDMEMEVEGRHH-----QMTLHS---VNTGVPHAVAFV-DNLE 174 Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ G + H F+ G N++ VT L LRT+ERGV T ACG+ A AS V Sbjct: 175 TVDVWQLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + L T ++ GG L + ++ G A+ + G Sbjct: 235 IAKELGLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRG 277 >gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 288 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 117/287 (40%), Gaps = 33/287 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI--- 64 F K G+GN LV CH ++ N H ML H D + Sbjct: 6 FHKYHGLGNDYLV-----CHRDVAEQL-------SNEHVQ--MLCHRHYGVGSDGLLIDS 51 Query: 65 --------RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113 RIIN DGSE + GNG+R R+L R+ + F T G + + D Sbjct: 52 GDQINPTLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDV 111 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ISVDMG + +P + + P+ L + +VSMGNPH + V D Sbjct: 112 HQISVDMGRANFNPAALPALVNLPEAVNYPL---PLADETL-SVVLVSMGNPHCVVLV-D 166 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L + G + H +F + N+ V +L + WERG G T A GS++CA+ Sbjct: 167 KLDLAQVHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAA 226 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A L + V V M GG L I + + V M G K LD Sbjct: 227 SAMRRLGMVDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19] gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19] Length = 279 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 43/237 (18%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSE + CGN RCVV+++T T+ G E + G I+V++ E Sbjct: 60 MRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRV-EVQGGWIAVEVPEA 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + K++ L + V G PH + E D H F Sbjct: 119 EIK-KVVELG------------------------YEVDAGVPHFVRLTERDPIH----DF 149 Query: 184 GNLLAK-HPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G L + +FSE GVN++ A S++ L +RT+ERGVG T ACGS A+ + Sbjct: 150 GGLTDEAKTIFSEYEPKGGVNVTYA-APSVDELRVRTFERGVGWTPACGSGVVAASLVYS 208 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 + VSV+ GG L + D + G A+ ++G+L G W ++N D + Sbjct: 209 EIFGPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGEL---RGDW-RENTDHQ 259 >gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] Length = 355 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 83/343 (24%), Positives = 142/343 (41%), Gaps = 71/343 (20%) Query: 6 VDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDD-----NTHFDQIMLIHD 54 ++F KM G GN +V + + G +T + I +T FDQ+++I D Sbjct: 13 INFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDD 72 Query: 55 FQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTF--------- 99 D + + +INCDG+ CGNG+RC +++ S+ ++ F Sbjct: 73 NPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQI 132 Query: 100 -ETIRGI----------LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 ET GI L K+N + V+MG P + + + R K+ ++ I Sbjct: 133 IETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIES 192 Query: 149 VNHLF---------LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN-------------- 185 + L +V GN +F + Y +S+G+ Sbjct: 193 YMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISD 252 Query: 186 -LLAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAAC----ASVVAS 236 + + F + N+ + + L+ R ERG G T ACG+ AC +S++ Sbjct: 253 IIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKG 312 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 C N ++V+M GG LLI+W+ NN +F TG A ++ ++ Sbjct: 313 YC--NENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQI 353 >gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 282 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 20/275 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIML-IHDFQDASVDA 62 F K G GN LV D + + I + + HF D I++ ++ +D Sbjct: 5 FEKYHGNGNDYLVFDTKKFEYELQGSQIREIC---DRHFGVGSDGILMGPYEKEDG---I 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISV 118 ++RI N DGSE + GNG+ +FL + T T+ G + +++G+++V Sbjct: 59 YVRIFNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+ IP+ ++ + + +++GNPH + + D+L Sbjct: 119 AMGKVSYMSDEIPVTGESREVIEEAMEFQGQKVI----TTCLTIGNPHCVI-IRDELVKK 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ S G ++ F +N+ +V + E + + +ERG G T + GS++CA+ + Sbjct: 174 EVKSLGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 L T+R V V M GG + +E ++ FMT K+ Sbjct: 234 LGLTDRKVKVHMPGGTVEVEIEEDGMTFMTSHVKR 268 >gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] Length = 285 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 16/273 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V K G+GN LV D + + + L D N ++ + +R Sbjct: 3 VVLEKYHGLGNDYLVFDPNKNEMELNEENVRLLC-DRNYGIGAEGILEGPVFETEQMGVR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121 I N DGS+ + GNG R ++L +++++F F+T G I V N DGS I + +G Sbjct: 62 IWNPDGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178 + IP+ +R + + +F RN + VS+GNPH + +++ H Sbjct: 122 KASFWSDEIPVTG-------ERREVVDEDMVFGRNLYPTTCVSVGNPHCVIPMKEVSKHL 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + GN F +N + +V E++ + +ERGVG T A GS+ACA+ A+ Sbjct: 175 -VCKIGNHSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L TN V+V M GG L +E ++ +F+TGE Sbjct: 234 LGLTNPGVTVHMPGGELQVEIQEDWEIFVTGEV 266 >gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] Length = 285 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 9/212 (4%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVD 119 +++ N DGSE ++ GNG+R ++L +++K+F T G V N DGS + V Sbjct: 60 VKVWNPDGSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVS 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+ IP+ ++ + G L VS+GNPH + + + + Sbjct: 120 MGKISFWSDEIPVTGEKREVINEDMVFGRT----LYPVTCVSVGNPHCVIPMRE-ISKNI 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ F +N I +V E++ + +ERG G T A G+ ACA+ + L Sbjct: 175 VCKIGDYSECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 TN V V M GG L +E D+ VFMTG+ Sbjct: 235 GMTNNKVIVHMPGGDLQVEVEDDGTVFMTGDV 266 >gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] Length = 1430 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 55/328 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DFAKM+ GN +V + + I + ++ D T L+ + A DA +R Sbjct: 1106 LDFAKMQSTGNDFIVFNAME-QEIINPEGLSVRLCDRRTGIGADSLVLITKSAVADAGMR 1164 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--------TSRMKRK-------SFTFETIRGI--LVA 108 N DGSE GN + CV ++L +R T ET G+ L+A Sbjct: 1165 FFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRLLA 1224 Query: 109 --KENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHI------------------ 146 + + S+ VDMG+P D IP LA S D I Sbjct: 1225 YTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENVAS 1284 Query: 147 -----GPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 V H L V+++G PH + F + D+ G L +P F Sbjct: 1285 GKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLF-SSFVDKIDVPGVGPLFENNPAFPR 1343 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC--LHKTNRAVSVKMLGG 253 +N RV SL +R WERG G T ACG+ ACA+ VA+ + ++VK+ GG Sbjct: 1344 RINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVRGG 1403 Query: 254 GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L++ + + V++TG A + G+++I Sbjct: 1404 DLIVNYTGDT-VYLTGGAALVYTGEIEI 1430 >gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 279 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 84/274 (30%), Positives = 125/274 (45%), Gaps = 21/274 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64 F + G+GN LV CH + + N D + L+ D DA + + + Sbjct: 3 FHRYHGLGNDYLV-----CHHRVAALLSNQQIRRICDRHYGIGSDGLLIDNDDADIPS-L 56 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--ISVDM 120 RIIN DGSE + GNG+R R+L R+ + F T G V E DG+ + VDM Sbjct: 57 RIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGG-HVRCEVTDGAHQVIVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +P + D+ G N + +VSMGNPH + V D DL Sbjct: 116 GQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRV--DKLDLDL 169 Query: 181 A-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G+ + +F + N+ A+V ++ + WERG G T A GS++CA+ A L Sbjct: 170 VKQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKL 229 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + V+V+M GG L I + + V M G +K Sbjct: 230 GLVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQK 263 >gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 301 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 86/310 (27%), Positives = 123/310 (39%), Gaps = 55/310 (17%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF--- 63 DF K E +GN LVID + T+D + ++ +L D D Sbjct: 4 DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63 Query: 64 ----------IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN 111 +RI N DG+ GNG+R R+L FT T G + Sbjct: 64 TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVR-- 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV--------- 160 +D ++ L P++ S RD +G H LR V Sbjct: 122 -----VLDRASGLIRLALGPMSSS----SRD---VGATGHDRPMLRETLRVDGENIEITC 169 Query: 161 -SMGNPHAIFFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 S GNPH + E+ +L H + G +A HP F VN+ +V ++ WE Sbjct: 170 LSDGNPHCVVVRENVTPELAH----ALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWE 225 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RG G T A GS ACA+ A+ L T V+V+M GG L +E + V +TG A + Sbjct: 226 RGAGYTLASGSGACAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQ--- 282 Query: 277 GKLDIKTGKW 286 + TG+W Sbjct: 283 ----VATGRW 288 >gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101] gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101] Length = 260 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 44/290 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 V+F K +G GN ++ID R + + + + + F D ++L+ + D+ Sbjct: 2 QVEFYKYQGTGNDFVMIDNR--SNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSET 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG++ CGNG RC+V F + TF G+ A D +S+ Sbjct: 58 DFRMVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQ 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M +D D ++ FL + G+PH + V DDL HY+ Sbjct: 118 M------------------IDVDEVQKND-SYTFL------NTGSPHHVQIV-DDLEHYN 151 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + ++ E G N++ + + LRT+ERGV T ACG+ A A +A Sbjct: 152 VKENGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMN 211 Query: 238 CLHKTNR-AVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281 + +T++ ++++ + GG L++ + H N VF+TG AK ++G ++I Sbjct: 212 AIGQTDKTSINLNVEGGKLVVSFDKLGDHFTN-VFLTGPAKFVFKGIIEI 260 >gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] Length = 289 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 45/243 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T T G+ ++DG ++V M Sbjct: 71 FMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVHIDKDGDVTVGM 130 Query: 121 GE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P D + RS+ RN V+MGNPHA+ FV+ Sbjct: 131 GGARLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA G+LL+ P + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 167 -DLAQAGDLLSPPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 225 Query: 233 VVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 VA+ + T +V + GG L+I + + MTG A EG++D K Sbjct: 226 AVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID---AK 282 Query: 286 WIK 288 W++ Sbjct: 283 WLE 285 >gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] Length = 298 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 24/237 (10%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKS------FTFETIRGILVAKENR 112 D +RI N DGSE + GNG+R R+L T R+++ S T ET G V E R Sbjct: 59 DCGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGG-HVRSEIR 117 Query: 113 DGS--ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNP 165 D I V+MG + IP LA R I + R F ++GNP Sbjct: 118 DAGRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDRE-FTFCAATIGNP 176 Query: 166 HAIFFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H + + + +L H +G L HP F N+ ++ ++ + WERG G T Sbjct: 177 HCVLPLPEVSAELAH----KYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYT 232 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A GS++ A+ + L + +V+V M GG + IE D+ + MTG K EG + Sbjct: 233 LASGSSSSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289 >gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] Length = 272 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 +H + DA + I N DGS CGNG+RCV+ +L+S ++++ + ET G+ K Sbjct: 55 FLHVLPSSIADAKLIIFNDDGSRPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKF 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + VDM P ++ L + + ++ F I G PH I F Sbjct: 115 YSWDRVVVDMTLPNWKYRSHQLTHTLSDLPKEVFSI--------------DTGVPHVIVF 160 Query: 171 VEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV 219 VE DL + +G+ L H F+ +G N++ + + +RT+ERG+ Sbjct: 161 VE-DLSSVPVNLWGSFLRYHEDFAPQGTNVNFVQAQDFREIHMRTYERGL 209 >gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] Length = 289 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 26/232 (11%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 A + F+ N DGS + CGNG+R R+L + T G+ ++G Sbjct: 66 AEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIAKNGD 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V MG +L + ++ + RN V+MGNPHA+ FV D Sbjct: 126 VTVGMGRALLPAGDVEVSVGEREWP-------------ARN---VNMGNPHAVAFVADLD 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + DL + + A + +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 170 HAGDLYAPPS-HAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228 Query: 236 SG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + T +V + GG L+I + + MTG A EG+ D Sbjct: 229 TARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD 280 >gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 6/90 (6%) Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKS----FTFETIR 103 M++HD DAF+RI N DGSE +CGNG RCV L M R S T ET Sbjct: 1 MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLA 133 G++ K D S +VDMG+P L W IPLA Sbjct: 61 GLVAVKRITDRSFTVDMGQPRLRWDEIPLA 90 >gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] Length = 260 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 121/289 (41%), Gaps = 41/289 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 S + F K +G GN ++ID R + + L D LI + D Sbjct: 2 SHIHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENHPTADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+VRF + + TFE I G+ AK Sbjct: 62 MVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAK------------- 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVEDDLYHYDLA 181 ++D I L S V + + N +V + G+PH + E +L D+ Sbjct: 109 -VIDATAISLQMS------------DVTEMRIENSYVYTNTGSPHHVQLTE-NLADLDVY 154 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G L + G N++ ++T E+ +RT+ERGV T +CG+ A +A +H Sbjct: 155 QEGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIA---MH 211 Query: 241 KTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 KTN V ++ GG L + + + ++++ G A ++G I Sbjct: 212 KTNHTNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260 >gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24] Length = 289 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 26/232 (11%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 A + F+ N DGS + CGNG+R R+L + T G+ ++G Sbjct: 66 AEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIAKNGD 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V MG +L + ++ + RN V+MGNPHA+ FV D Sbjct: 126 VTVGMGRALLPAGDVEVSVGEREWP-------------ARN---VNMGNPHAVAFVADLA 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + DL + + A + +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 170 HAGDLYAPPS-HAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228 Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + A +V + GG L+I + + MTG A EG+ D Sbjct: 229 TARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD 280 >gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 277 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 114/257 (44%), Gaps = 30/257 (11%) Query: 8 FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F K+ G GN +++D R ++ S + A + D ++LI + Q+ D F Sbjct: 6 FWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEG--DLF 63 Query: 64 -IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ N DGSE + CGNG RC R L + F T G + A+ + + ++MG Sbjct: 64 RMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGE-RVRLEMG 122 Query: 122 EPILD--WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177 E L+ W FD+ DR FL +G PHA+ + + D+ Sbjct: 123 EIDLEEAW--------FDEPLEDRDLPPGTRWSFLH------VGVPHAVLWADSWQDVSE 168 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 L G HP +G N++ A +L +RT+ERGV T +CG+ +CA V + Sbjct: 169 GTLRWIGKKYRHHPRCPQGANVNFA-APEEGALRVRTYERGVEDFTDSCGTGSCACGVVA 227 Query: 237 GCLHKTNRAVSVKMLGG 253 L V V+ GG Sbjct: 228 -VLRGGPSPVEVRTPGG 243 >gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] Length = 268 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/283 (27%), Positives = 123/283 (43%), Gaps = 35/283 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+K+ G GN +++D R + + AI AL T D ++LI + AS Sbjct: 5 IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETASFSMLY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM-GEP 123 N DG CGNG RC V F S + + + G + G+P Sbjct: 65 H--NADGLPGTMCGNGGRCAVWFARS---------------IGVQPDAGGCFRFEANGDP 107 Query: 124 ILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 W + + L + RD +G F + G+PHA+ E L D Sbjct: 108 YQAWVSGPETVRLRMREPRGIRDEIDLGGQYCAF------IDTGSPHAVIRTE-GLDAVD 160 Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + + +F G N++ VT+ +S+DLRT+ERGV T ACG+ A A+ + S Sbjct: 161 VVGEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSR 220 Query: 238 CLHKTNR-AVSVKMLGGGLL--IEWHDNNHVFMTGEAKKEWEG 277 L T+ ++ V++ G +L D V++TG A + G Sbjct: 221 RLGMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTG 263 >gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 281 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 24/277 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 S + K G+GN L+ D + + I L + D I+ +D + Sbjct: 2 SEIILRKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118 +RI N DGSE + GNG+R R+L +K + + T G LV + GS + V Sbjct: 61 -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172 DMG + + + IP A F+ G V +F + F VSMGNP+ + +E Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + G + F +N+ + ++ +++ + +ERG G T A G+ ACA+ Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 AS L AV+V M GG L IE+ + +FMTG Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265 >gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 281 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 24/277 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 S + K G+GN L+ D + + I L + D I+ +D + Sbjct: 2 SEIILRKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118 +RI N DGSE + GNG+R R+L +K + + T G LV + GS + V Sbjct: 61 -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172 DMG + + + IP A F+ G V +F + F VSMGNP+ + +E Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + G + F +N+ + ++ +++ + +ERG G T A G+ ACA+ Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 AS L AV+V M GG L IE+ + +FMTG Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265 >gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] Length = 285 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 18/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM---LIHDFQDASVD 61 + + G+GN LV D + + + L + D I+ L+ + Q A Sbjct: 3 ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGILEGPLMEEKQMA--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-IS 117 +RI N +GS + GNG+R ++L +++K +T T G + + N +GS + Sbjct: 60 --VRIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLK 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+ IP+ ++ + G L VS+GNPH + +++ + Sbjct: 118 VSMGKLSFWSDEIPVIGERRQVINEDMVFGRT----LYPATCVSIGNPHCVIPMQE-ISE 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + F +N + V + ++ + T+ERG G T A G+ ACA+ + Sbjct: 173 PLVCKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAY 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 L T+ V V M GG L +E D+ +MTG+ Sbjct: 233 KLGLTSNKVIVHMPGGELQVEIGDDWEAYMTGD 265 >gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] Length = 269 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 25/217 (11%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F K G GN ++ D R + I L D I+L+ + A A +R Sbjct: 4 SFTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIA--HARMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP- 123 I N DGSE + CGNG+RC++ ++ S + ++ ET +L A ++ +I+++MG P Sbjct: 62 IFNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSAS-NITIEMGSPN 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W +P++ + +++ +N G PH I F E ++ + L Sbjct: 121 KLNWN-VPIS-----FESKIYYVHSLN-----------TGVPHIILFAE-NIEQFPLERM 162 Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219 G + HP++ +G N SI + ++ +RT+ERGV Sbjct: 163 GPFIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGV 199 >gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] Length = 268 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 112/281 (39%), Gaps = 27/281 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 + F K G N L R +A+ D +T D ML+ DA + Sbjct: 3 IPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAEGT 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKE-NRDG---SISV 118 I++ N DGS + GNG RC FL M T G+ + R G + Sbjct: 63 IQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQFEM 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG + K L + ++ D V L++ GNP VE + + Sbjct: 123 NMGRAEIAEKRFELQVTGERRD--------VTLLWV--------GNPQCAVPVEH--FDF 164 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D + G + +HP F N+S R ++D+R WERG G T + G+ + + + Sbjct: 165 DWRTLGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMAVA 224 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V+ G + + + + +F+TG A+ EG+ Sbjct: 225 RGLASSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263 >gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] Length = 269 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 41/288 (14%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNI-----TSDAINAL-STDDNTHFDQIMLIHDFQDA 58 + FAK++G GN ++I+ + G D +A+ + S D ++L+ D A Sbjct: 3 LKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDSTVA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117 D R N DGS + CGNGMRC RF+ + ET+ G+ + Sbjct: 63 --DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGV----------VE 110 Query: 118 VDMGEPILDWKLI-PLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + PI+ L P + + K+D H ++ G PHA+ FVE Sbjct: 111 AFVYGPIVKVGLTKPRELALNLKVDGLTVHF-------------INTGVPHAVIFVERA- 156 Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 ++ G + HP+F+ G N++ V L+ + +RT+ERGV T ACG+ + AS Sbjct: 157 DAVNVKEIGRKVRFHPLFAPAGTNVNFVEV-RLDRIVVRTYERGVEDETLACGTGSVASA 215 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279 + + + K + V V++ G L D + V++ G K ++G L Sbjct: 216 LIAAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDGLL 263 >gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 281 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 24/277 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 S + K G+GN L+ D + + I L + D I+ +D + Sbjct: 2 SEIILGKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSISV 118 +RI N DGSE + GNG+R R+L +K + + T G ++ ++ + V Sbjct: 61 -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172 DMG + + + IP A F+ G V +F + F VSMGNP+ + +E Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + G + F +N+ + ++ +++ + +ERG G T A G+ ACA+ Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 AS L AV+V M GG L IE+ + +FMTG Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265 >gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec] gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec] Length = 307 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 39/283 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM--LIHDFQDASVDA 62 V F K G GN L++ +++ + + AL D ++ ++ + A+ D+ Sbjct: 11 VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70 Query: 63 -----FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DGS + CGNG+R R+L T G+ + G Sbjct: 71 AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130 Query: 116 ISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++V+MG P L +P+ R F + VSMGNPHA+ F Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREFAAVP-------------------VSMGNPHAVCFA- 170 Query: 173 DDLYHYDLASFG--NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 DDL LA F EGVN+ + V + + + +R +ERGVG TA+CG+ AC Sbjct: 171 DDLDPAGLARLDLRAPAYPAAAFPEGVNVEVV-VPAPDGVAMRVFERGVGETASCGTGAC 229 Query: 231 ASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEA 271 A VA + V V + GG L + W ++ V ++G A Sbjct: 230 AVAVAWAARNGDGPPAEVEVDLPGGRLTVGWREST-VLLSGPA 271 >gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265] gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265] Length = 268 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 122/285 (42%), Gaps = 33/285 (11%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61 ++ + F+K+ G GN +VID R +++ I + D ++LI AS D Sbjct: 2 TAEIPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIE--PSASAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ N DG CGNG R V F S I + E G G Sbjct: 60 FMMKYHNADGHPGSMCGNGGRAAVWFAHS--------------IGIPFEQEGGCRFEAGG 105 Query: 122 EPILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P W + + L K RD G F V G+PHAIF+ L Sbjct: 106 NPYRAWITASETVRLQMLEPKGFRDNIKTGGGACHF------VDTGSPHAIFYTTG-LDG 158 Query: 178 YDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D+ G + + +F G N++ VT+ +S+ LRT+ERGV T ACG+ A AS + Sbjct: 159 VDVVGRGGEVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALM 218 Query: 236 SGCLHKT-NRAVSVKMLGGGLL-IEW-HDNNHVFMTGEAKKEWEG 277 S L T + + V++ G L + + D +F+TG A+ + G Sbjct: 219 SHRLGMTPSTTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRG 263 >gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 36/238 (15%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGI 105 D ++L+ + D S D + N DG++ CGNG RC+V F + + TF I G+ Sbjct: 44 DGLILLEN--DQSTDFKMVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGL 101 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 A N + IS+ M K + D N++FL + G+P Sbjct: 102 HHATINENDIISLQM-------KNVEEVNIHD------------NYVFL------NTGSP 136 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTA 223 H + F D+L ++D+ + G + ++ + G N++ TS +RT+ERGV T Sbjct: 137 HHVQFA-DNLSNFDVKNEGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETL 195 Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276 +CG+ A A+ +A KTN +++ + GG L + ++ N ++F+ G A+ +E Sbjct: 196 SCGTGATATAIAMKATGKTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFE 253 >gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] Length = 289 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 39/240 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L ++ T G+ A ++DG ++V M Sbjct: 71 FMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAHLDKDGDVTVGM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G +P +D + RN V MGNPHA+ FV+ DL Sbjct: 131 GR-----ARLPEGEVTVSVDGRTWP--------ARN---VDMGNPHAVAFVD------DL 168 Query: 181 ASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 A G LLA P+ + +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 169 AHAGELLAPPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228 Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 + + V +V + GG L+I + + MTG A EG++D +W++ Sbjct: 229 AARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEIDE---EWLR 285 >gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] Length = 260 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 34 AINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK 93 I+AL ++ D +L+ + DA + I N DGS + CGNG+RCV+ L+S +K Sbjct: 33 TISALCKEEQV--DGFLLV--LPSSVADAKLIIFNDDGSRPKMCGNGLRCVIAHLSSVLK 88 Query: 94 RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 ++ + ET GI K + VDM P ++ L + ++ ++ F I Sbjct: 89 KEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCHNLTYTIAQLPQEIFSI------- 141 Query: 154 LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDL 212 + G PH + FV DD+ + +G+ L H FS EG N++ S + Sbjct: 142 -------NTGVPHLVVFV-DDVSCIPIDLWGSFLRYHADFSPEGANVNFIEAMSSREFRI 193 Query: 213 RTWERGV 219 RT+ERG+ Sbjct: 194 RTYERGL 200 >gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 286 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 120/280 (42%), Gaps = 11/280 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60 S + F KM G GN +V+D+R + D AL+ D +T D I+ I + + Sbjct: 2 SPTLAFTKMHGCGNDFVVLDLRDA-PAPSPDLCRALA-DRHTGVGCDLILGIRPPRSTTA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 A I +G CGNG RCV +L + SF ++ G K D S+ Sbjct: 60 VAAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSI 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + P + IPL RD ++ + S GNPHA+ V DD+ Sbjct: 120 GLTVPRFAPEEIPLT---GFAGRDGWYEAVLADGTSVRFAAASTGNPHAVLEV-DDVGGG 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A G + P VN+ A V + + + LR E G G T ACGS ACA+ Sbjct: 176 SVARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIR 235 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 + R V+V++ GG L + W + + + G A +EG Sbjct: 236 AGRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275 >gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1] gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1] Length = 286 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 21/284 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---DQIMLIHDFQDASVDAFI 64 + K +GN +V+D R + I+ + + +F +L + + Sbjct: 3 YHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDGILWGPLPSKQSEFGL 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL--VAKENRDGSISVDM 120 RI N DGSE + GNG+R RFL + ++ +FT ET G + V KEN I+V M Sbjct: 63 RIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKEN-GRLITVAM 121 Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDL 175 G D IP LA + ++ ++ + + ++GNPH + + ++ Sbjct: 122 GRVSFDSAKIPVNLAGAAREVINEKLTVLDREFTYC----AATIGNPHCVIPLAEISPEI 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H +G + HP F N+ RV +++ L WERG G T A GS++ A+ Sbjct: 178 AH----RYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAV 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L +R V+V M GG + IE + + MTG K EG + Sbjct: 234 AHRLGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277 >gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] Length = 270 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 34/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN ++I+ ++ + + L N F D ++L++ D Sbjct: 3 IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLC---NRRFGIGADGLILLNPPADEFAQ 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 A + N DG V CGNG RC F TF+T G + A + +DG ++ Sbjct: 60 ATMVYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKA-DAQDGEFTIR 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M P+ D +L D+ P H F ++ G H I F DD+ D Sbjct: 119 M-TPMHDLRL------------DQTLSTP--HGSFEYHF-MNTGVEHVIVF-RDDVDQVD 161 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + S G+ + H F +G N + A + + +RT+ERGV T ACG+ A +A+ Sbjct: 162 IKSEGSSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAA 221 Query: 238 CLHKTNRAVSVKMLGG-----GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VS+ + GG G ++ + +++ +TG AK + G ++ Sbjct: 222 LKGMAKAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270 >gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] Length = 273 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 43/291 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINA------LSTDDNTHFDQIMLIHDFQDAS 59 + F KM+G GN ++ID R + SD A + D ++ + A+ Sbjct: 4 IPFWKMQGSGNDFVLIDHR---RSFISDGERAGFARKVCAPKFGVGADGLIFLES--SAT 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 VD R N DGSE + CGNG RC RF + + FET+ G++ A E D + + Sbjct: 59 VDFRWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHA-EVLDRRVKL 117 Query: 119 DMGEP-ILDWKL-IPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++ P L L IPL A+++ H ++ G PH + + DL Sbjct: 118 ELSPPHGLRLGLEIPLSAKTW------------TGHF-------INTGVPHVVLPLA-DL 157 Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 + G + H +F G N++ R + L +RT+ERGV T ACG+ + A+ Sbjct: 158 EAAPVTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAA 217 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279 + + L V V G L + D VF+ G A ++G+L Sbjct: 218 LIASRLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268 >gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 273 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 31/266 (11%) Query: 3 SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S V+F K++G GN L +D ++ A+ A + D ++++ + A Sbjct: 2 SHWVEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA 61 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRDGS 115 +RI N DGSE CGNG RC ++R+L ++ F T G + A +RD + Sbjct: 62 YR---MRIFNADGSEADMCGNGARCFAMMLRWLG--LEDPEMEFLTNVGPVRAHVHRDST 116 Query: 116 ISVDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 +S+ MG P + L ++ +++ + +++ +G PH + + + Sbjct: 117 VSLHMGFNPFGEGALFRVSERVGEVEAEMWYL--------------HVGVPHLVLWADRW 162 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 DL S G P F G N++ S L T+ERGV LT +CG+ ACA Sbjct: 163 DLREDGFRSLGARYRHDPRFPRGTNVNFVS-PSEGGLTCITYERGVEDLTLSCGTGACA- 220 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE 258 V AS + V V+ GG L+E Sbjct: 221 VAASAVMRGMGSPVRVESPGGYNLVE 246 >gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1] gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1] Length = 269 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 43/291 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 ++ ++ F K +G GN +++D R HD + + + F D ++L+ + Sbjct: 8 IEEMILSFYKYQGTGNDFVLVDNR--HDIFPKNNTKLIRKLCDRKFGIGADGLILLEN-- 63 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115 D + D + N DG+E CGNG RC+V F + ++ TF I G A S Sbjct: 64 DETYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYA------S 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I D+ L + + + D+ H+FL G+PH + F E+ + Sbjct: 118 IEADVVN--LQMQDVTTIENHDE------------HVFL------DTGSPHHVTFKEE-I 156 Query: 176 YHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 +D+ G + P F EG N++ + S +RT+ERGV T +CG+ A Sbjct: 157 SQFDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVA 216 Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 +A L +T+ V++++ GG L + + ++F+ G+A + ++G++ Sbjct: 217 LAMHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEI 267 >gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 266 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 27/217 (12%) Query: 8 FAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F+K G GN ++ID R D S D ++L+ A D +R Sbjct: 5 FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DG E + CGNG+RC+V+F +++K +T +T+ +L A D SI++ M +P Sbjct: 63 IFNADGYETEMCGNGIRCLVKFAQEIGIQKKHYTIQTMHSLLEAFPFGD-SITISMTDPA 121 Query: 125 -LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++W +++ D+ L V G PHA+ FV D+L + Sbjct: 122 EIEWD--------TQIEVDQT---------LLTVHWVDTGVPHAVIFV-DELEEARWMTL 163 Query: 184 GNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV 219 + HP FS +GVN++ A++ E + LRT+ERGV Sbjct: 164 APKIRAHPHFSPKGVNVNFAQIKK-EEISLRTYERGV 199 >gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245] gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245] Length = 272 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 33/289 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K+ G GN +VID R ++++ I A+ T D ++LI + D Sbjct: 2 QIHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDFS 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG CGNG RC V F + ++FE A ++ + Sbjct: 60 MNYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRLH 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178 M +P D++ F N V+ G+PHA+ ++E L Sbjct: 120 MLDP-EDFRNAVAVEGF-------------------NCHYVNTGSPHAVIYIESRKLEAL 159 Query: 179 DLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D++ G + + +F G N++ +T+ +S+ +RT+ERGV T ACG+ A A+ + S Sbjct: 160 DVSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALMS 219 Query: 237 GCLHK-TNRAVSVKMLGGGLL--IEWHDNNHVFMTGEAKKEWEGKLDIK 282 L K ++ V VK+ G L D V +TG AK + G +++ Sbjct: 220 FRLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQ 268 >gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] Length = 301 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 128/307 (41%), Gaps = 47/307 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASV 60 V+F KM G GN ++ID R + + AL+ + D ++++ Q V Sbjct: 20 VEFCKMTGTGNDFILIDNR--RARLAPALMPALAKALCCRRRSVGADGLIVLSPSQ--RV 75 Query: 61 DAFIRII-------NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR 112 DA + I N DGS + CGNG RC RF S + F+T+ Sbjct: 76 DAALGKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIGLAGPELIFDTL---------- 125 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G I +G + +L P +D + R IG V+ G PHA+ V Sbjct: 126 AGPIRAWVGRQTVTLELTPPTGWYDDL---RLEIGGRTMTI----HGVNTGVPHAVVPV- 177 Query: 173 DDLYHYDLASFGNLLAKHPMFSEG---VNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 DDL D+ ++G + H F+ VN AR LE +RT+ERGV T ACG+ Sbjct: 178 DDLSSADVKNWGREIRFHRHFAPAGTNVNFIAARHGRLE---VRTYERGVEDETLACGTG 234 Query: 229 ACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 A AS + +G L ++V + G L I + + V + G A ++G L Sbjct: 235 AVASALMAGRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGA 294 Query: 284 GKWIKKN 290 W+ Sbjct: 295 FAWLANQ 301 >gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] Length = 258 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 40/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63 V F K +G GN ++ID R I + + A D D ++L+ + + D Sbjct: 3 VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N +G E CGNG RC V+F + T F + G AK DG + + MG Sbjct: 61 MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHETHFIAVDGPHDAKV-EDGLVHLKMG- 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D + + ++H FL G+PH + FV ++L +D+ + Sbjct: 119 ---DVQTVE---------------NNLDHYFL------DTGSPHYVQFV-NNLPQFDVFA 153 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + F E G N++ + + +RT+ERGV T +CG+ A+ + SG L Sbjct: 154 EGKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQ 212 Query: 241 KTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281 + N +++K LGG L I + + ++++ G A+ +EG + + Sbjct: 213 QMNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258 >gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 120/290 (41%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D D + I D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDGP-LMDAARARRICDRRR--GVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG----- 114 A + I N DGS CGNG+RCV R L +R +T G +R Sbjct: 59 AATMHIFNSDGSVAAMCGNGIRCVARHLADARGLDGDLVLDTDSGPKRCTIHRGPGGAVE 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG L+ + + +G LR VSMGNPHA+ F D Sbjct: 119 AVSVEMGPARLEGE-------------QEYRVGGEALRALR----VSMGNPHAVLF--DA 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAACAS 232 + G L + + GVN+ AR +DL WERG GLT G+ A A Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 S L + V V++ GG L I D V M G A++ + G+ D+ Sbjct: 217 ASVSRGLARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] Length = 254 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 108/266 (40%), Gaps = 38/266 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K+ G GN LV + + AL N ++ D DA V + Sbjct: 3 LTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHDAMV-----LY 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISVDMGEPILD 126 N DGS + GNG+RC+ +T FET G + + R+G + Sbjct: 58 NADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGREGGSVLGA------ 111 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--FFVEDDLYHYDLASFG 184 +GPV+ + V GNPH + +L D+AS G Sbjct: 112 -----------------TTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVASLG 154 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---SGCLHK 241 H + +GVN+ A V + + + +R +ERGVG T ACG+ + A VA +G + + Sbjct: 155 RCAQAH--YPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLVER 212 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFM 267 T+ V V+ GG L +E + V + Sbjct: 213 TS--VRVRNPGGALTVEVTEPEPVLV 236 >gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] Length = 286 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 23/221 (10%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R +L + T G+ DG ++VDM Sbjct: 79 FMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRVTVDM 138 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G L R R +G N + V +GNPH E DL DL Sbjct: 139 GPAAL-------------FGRSRTAVGKENFPGV----AVDLGNPHLACVTEADLDGLDL 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-GCL 239 +S + +F +GVN+ + T + +R +ERGVG T +CG+ A+ VA+ Sbjct: 182 SSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAALDAD 239 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T V + GG + +E + +TG A G+LD Sbjct: 240 GATTGHRIVDVPGGTVEVEVTEQTST-LTGPAVLVAAGRLD 279 >gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17] gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17] Length = 311 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 36/236 (15%) Query: 68 NCDGSEVQSCGNGMRCVVRF---------LTSRMKRKSFTF----ETIRGILVAKENRDG 114 N DGSE ++C NG+RCV R T R+K T + + G+ +E Sbjct: 67 NSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYTVRET--- 123 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G L P+ + D++ D + F V+M NPH + FVE Sbjct: 124 -----AGPAGLSTAAWPIHGAPDRLVEDVLPMLDRARRFT----AVTMPNPHLVHFVET- 173 Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +L G + P + N+S V ++L +RT+ERGVGLT +CGSA AS Sbjct: 174 VDEAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAAST 232 Query: 234 VASGCLHKTNR----AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284 A+ CL T R + +V GGL+ + ++ V ++G A EW G +++ G Sbjct: 233 YAA-CL--TGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285 >gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] Length = 280 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 45/295 (15%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDF 55 +Q + F K +G GN +++D R D+ I + N F D +M + Sbjct: 12 LQYMKLKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGIC---NRRFGVGGDGMMFLQ-- 66 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDG 114 Q D + N DG CGNG RC+V F S T F + G AK + G Sbjct: 67 QKDGYDFEMVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSG 126 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 DW + + + D + +D +V++ G+PH + V DD Sbjct: 127 -----------DWVSLQMI-NVDVIKKD------------GEDYVLNTGSPHYVRLV-DD 161 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 L + D+ G + + + ++G+N++ + L +RT+ERGV T ACG+ A Sbjct: 162 LQNVDMYEEGRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAV 220 Query: 233 VVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281 +A +S VK+LGG L I + + +F+ G AKK +EG+LD+ Sbjct: 221 ALAMAKYQNRTGEISTPVKVLGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDL 275 >gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] Length = 256 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 48/289 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K +G GN ++ID R D IN +S + HF D ++LI + D ++D Sbjct: 3 LNFYKYQGCGNDFVMIDNRS--QTFNKDTINTISKLCDRHFGIGADGVILIEN--DLALD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSISV 118 + N DGS+ CGNG RC V +F GI+ + N DG+ Sbjct: 59 FKMVYYNPDGSQT-FCGNGGRCAV------------SFAHFLGIIKNETNFTAFDGTHFS 105 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + I+ K+I ++ + L ++ G PH + V D L ++ Sbjct: 106 KIKNNIVSLKMIDVS----------------DIQILEQAVFLNTGTPHHVQVVTD-LSNF 148 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 D+ G + ++ S G N++ + + +RT+E+GV T ACG+ A +A Sbjct: 149 DVFREGEKI-RYTYKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMH 207 Query: 238 CLHKTNR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 KTN ++++ + GG L + + + ++F+ G A ++GK++I Sbjct: 208 KTKKTNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256 >gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 304 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 35/238 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKEN------ 111 F+ N DGS + CGNG+R R+L ++ T +R I +AK++ Sbjct: 73 FMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIAKDDLGGTDA 132 Query: 112 RDGSISVDMGEPILDWKLI--PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G+++V MG+ L P+ + + H P H V MGNPHA+ Sbjct: 133 PGGAVTVQMGKATLPEPGADGPVTVAVGE------HSWPARH--------VDMGNPHAVA 178 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DDL + + G N+ + +R ERG G T +CG+ A Sbjct: 179 FV-DDLDQAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 237 Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 CA +VA+ + A +V + GG L+I + V MTG A EG+LD Sbjct: 238 CAVMVATARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVAEGELD 295 >gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1] Length = 273 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 41/297 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ K + D Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDD 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG +++ D+ I H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAV 218 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIKTG 284 A+ +A+ H+ V V GG +++ +N +TG A GK+D+ G Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273 >gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] Length = 259 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 46/288 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60 +F K +G GN +V+D R + T I N F D ++LI HD D + Sbjct: 5 EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLC--NRKFGVGSDGLILIENHDEYDFEM 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 F N DGS+ CGNG RC V+F + + TF + G+ Sbjct: 63 IFF----NPDGSQ-SMCGNGSRCAVKFAQFLGIIKGETTFLSTDGVH------------- 104 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 E ++ ++ L S + + + P + F ++ G+PH + F ++ + D Sbjct: 105 --EATIEGDIVRL--SMHDVAQSEINTFPEH-------FTINTGSPHYVIFA-SNIKNKD 152 Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + + F+ EG+N++ S + +RT+ERGV T +CG+ A +A+ Sbjct: 153 VKEEGASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIAN- 211 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 LH V ++ LGG L++E+ +V++TG AK ++G++++ Sbjct: 212 VLHGGVSPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259 >gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 274 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 40/294 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62 ++F+K+ GN ++ID R + I + AL+ D LI + A D Sbjct: 3 INFSKLTAAGNDFILIDNR--ENIIAQEDCQALAKKLCDRKYSIGADGLILLEKSACKDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ N DGS CGNG R + +F + FET G++ A+ + + +D+ Sbjct: 61 KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120 Query: 122 EP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P D K+ + FD VN ++ G PH + FV DD+ + Sbjct: 121 NPRDLKKDIKVEVNGKEFD-----------VNF--------INTGVPHVVIFV-DDIENI 160 Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ +G + +H F+ G N++ +V +L +RT+ERGV T ACG+ AS + S Sbjct: 161 DVFGYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIIS 220 Query: 237 GCLHKTNRAVSVKMLGGG---LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 + K A VK++ G L + + N +V + G A ++G + I++ Sbjct: 221 --VLKGFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272 >gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] Length = 300 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 124/307 (40%), Gaps = 41/307 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F K G N +++ N+ +D + L+ D ++ + A+ DA Sbjct: 5 TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64 Query: 63 ----------FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILV 107 F+ N DGS + CGNG R +L + FE I+GI Sbjct: 65 VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARS----FDKMDRDRFHIGPVNHLFLRNPFV---V 160 +I+ +MG W+ A++ FD + R +P+ V Sbjct: 125 EGSGDHATIATNMGA----WRFTDPAKAETDGFDSLVLLR------ERPLAEDPWSALSV 174 Query: 161 SMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 MGNPH + + + DL DL + P+ S G N+ RV + +R ERG Sbjct: 175 DMGNPHTVVALPESVDLATLDLFHVPEV---RPVPSNGTNVEFVRVVGAGHIAMRVHERG 231 Query: 219 VGLTAACGSAACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 VG T +CG+ CA+ +A+ + + +V + GG L + N+ V + G A Sbjct: 232 VGETRSCGTGVCAAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVA 291 Query: 276 EGKLDIK 282 +G +D+ Sbjct: 292 DGTVDLS 298 >gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium] Length = 261 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 43/284 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K + GN ++ID R T + ++ + F D ++L+ + D D Sbjct: 3 INFYKYQATGNDFVIIDNR--LKTFTKNNTKLIARLCDRRFGIGADGLILL-ELADG-FD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD-M 120 + N DG E CGNG RC+V L R+ G++ N I+VD + Sbjct: 59 FKMIYYNADGKESSMCGNGGRCIVA-LAQRL-----------GMIQGSTN---FIAVDGL 103 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + L KM RD F L FVV G+PH + + +L D+ Sbjct: 104 HKATIQGSQVSL-----KM-RDVFKTAK-----LGGGFVVDTGSPHCVL-MRSNLSAVDV 151 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G+ L P F EG+N++ + S E +RT+ERGV T +CG+ A +A Sbjct: 152 QFEGSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHA 211 Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277 L KTN+ + ++ GG L + + N +V+++G A +EG Sbjct: 212 LKKTNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255 >gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] Length = 259 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 39/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN +++D R ++ + I ++ D ++L+ + + D + Sbjct: 3 IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG E CGNG RCVVRF F+ + + +++ GE I Sbjct: 61 VYFNADGGEGSMCGNGGRCVVRFANDLG-----LFDGNTKFIAVDGEHEATVT---GEVI 112 Query: 125 -LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L + +++ D ++ G+PH + +V DD++ D+ + Sbjct: 113 RLKMSNVNGVEQYEEYD------------------FMNTGSPHYVTYV-DDIHEADVVNI 153 Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ + ++ G N++ V L +RT+ERGV T +CG+ A +++ Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281 V+V+ +GG L +E+ + +++ G A + +EG L++ Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259 >gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 48/289 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 ++F K +G GN +++D R I L + F D ++L+ + D + D Sbjct: 1 MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLC---DRRFGIGADGLILLEN--DPNYD 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 + N DG E CGNG RC+V F +F + + +A DG + Sbjct: 56 FKMVYYNSDGGESTMCGNGGRCLVAF--------AFFLDIFEDKCRFIAT---DGEHEAE 104 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + I+ K+I ++ V+H N FV++ G+PH + +VE +L Y Sbjct: 105 IHNGIIKLKMI--------------NVDAVSHD--GNDFVLNTGSPHYVKYVE-NLKDYP 147 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + + E G+N++ S + +RT+ERGV T +CG+ AS + Sbjct: 148 VYDEGYGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALT-- 205 Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 L K N +V VK LGG L + + ++++ G AK+ + GK D+ Sbjct: 206 FLQKHNLTSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254 >gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] Length = 289 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123 ++ DGS CGNG RC + R +T G V +++R ++++MG P Sbjct: 77 LVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVEDDR---VTIEMGAP 133 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +PLAR + ++ + + ++ G PHAI FV DD+ L S Sbjct: 134 SFRPRDVPLAREEELVEEEIEGL---------TVTALNTGVPHAIAFV-DDVDAVALESV 183 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG--CLH 240 + +F +G N+++A S RT+ERGV G T +CG+ A A V A+ L Sbjct: 184 APAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRVGLV 243 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I D+ +TG A+ E+E +LD+ Sbjct: 244 DGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284 >gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum] Length = 92 Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 48/78 (61%) Query: 202 ARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD 261 A+V S ++ +R WERG G+T ACG+ ACA++VA+ T R + + GG L IEW + Sbjct: 3 AQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEWTE 62 Query: 262 NNHVFMTGEAKKEWEGKL 279 ++ V MTG + G+L Sbjct: 63 DDRVLMTGPVALAFSGRL 80 >gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1] gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2] gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3] gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4] gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2] gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1] Length = 273 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 121/297 (40%), Gaps = 41/297 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ K + D Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDD 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG +++ D+ I H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAV 218 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284 A+ +A+ H+ V V GG +++ D +TG A GK+D+ G Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] Length = 285 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 25/282 (8%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM+G GN + +D R G D + + D ++ + S A Sbjct: 11 VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70 Query: 63 FI-RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-ISVD 119 +I N DGS + CGNG RC R + F T G + A+ + D + ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P K + +A + R FH+ VN G PHA+ V D L D Sbjct: 131 LTPP----KDLRMAIDIEVEGRP-FHLHFVN-----------TGVPHAV-AVMDHLELVD 173 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + +H F+ G N++ +L LRT+ERGV T ACG+ A AS + + Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L T + GG +L + ++ G A+ ++G+ Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEF 275 >gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 332 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 120/293 (40%), Gaps = 24/293 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST----DDNTHFDQIMLIHDFQDAS 59 S + K G N I VID +D A++ D + + D D + Sbjct: 2 SRLSITKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGT 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET---IRGILVAKENRDGSI 116 A+ N DGS CGNGMRC R L R +S+T T + A+ G Sbjct: 62 AQAWF--FNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVR 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173 V + P D+ + D +G P H LR V+M N H + V D Sbjct: 120 QVAVELPPADFS----PQEAIVADVASPFVGQLLPAYHPALRT-TAVAMPNSHLVSVV-D 173 Query: 174 DLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DL + G+ +A F G N+S + + + +RT+ERG GLT +CGS AS Sbjct: 174 SYDRADLVATGSRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSAS 233 Query: 233 --VVASGCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKLD 280 V++ L + +AV ++ +GG L E + G A +E +LD Sbjct: 234 RAVLSRLGLAEPGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYEVELD 286 >gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] Length = 272 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 29/225 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRC-VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 F+ N DGS + CGNG+R + + + S F LV + D I+VD Sbjct: 67 FMDYRNADGSTSEMCGNGIRVFALHLVQEGLVDPSGPF------LVGTRDGDKQITVDGD 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +D + + R K+ D +H++ V GNPHA+ FV+D LA Sbjct: 121 LVTVDMGVAEV-RGTTKVTVD-------DHVWEAQD--VRTGNPHAVAFVDD------LA 164 Query: 182 SFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G L A+ ++ +GVN+ R + + +R ERG G T +CG+ ACA+ VA G Sbjct: 165 EAGALTAQPEYDEVVYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAAVAHG 224 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 H + V + GG + + + V + G A+ G+++ Sbjct: 225 LDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269 >gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1] Length = 273 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 49/301 (16%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRSGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ + + D Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG +++ D+ I H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D+ D ++ A F +GVN+ ++ +R +ERG G T +CG+ Sbjct: 159 HTTVCDINLNDSPTWRPRSA----FPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214 Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283 A A+ +A+ H+ V V GG +++ + D +TG A GK+++ Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272 Query: 284 G 284 G Sbjct: 273 G 273 >gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] Length = 270 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 44/296 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R +++ I AL T D ++LI S D + Sbjct: 3 IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIE--ASLSADFTM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFET----IRGILVAKENRDGSI 116 + N DG CGNG RC F K + FE +V KE + Sbjct: 61 KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKE----QV 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + M P D+K + + + FL + G+PH + +V DD+ Sbjct: 117 KLQMNPP-HDFK-------------ENLQVEGLLCYFL------NTGSPHVVTYV-DDVN 155 Query: 177 HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 ++ G+ + + +F+ G N++ + TS L +RT+ERGV T ACG+ A AS + Sbjct: 156 IINVYEKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASAL 215 Query: 235 ASGCLHKTNRA---VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286 S L KTN V+V+ G L I + +++++G AK + G + KT + Sbjct: 216 ISHMLGKTNSTSLNVTVRS-GDTLQISFTSAMENIYLSGPAKIIFSGTFE-KTSNY 269 >gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c] gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c] Length = 340 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 37/230 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L ++ T G+ +A +G ++V+M Sbjct: 113 FMDYRNADGSIAEMCGNGLRVFGRYLVDAGYERAGLIPVATRAGVRLADVPNEGDVTVEM 172 Query: 121 GEPI---LDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 G P L + + +A R+F+ + VSMGNPHA+ F DDL Sbjct: 173 GPPTIGPLGAERVSIAGRTFEATN-------------------VSMGNPHAVCFA-DDLA 212 Query: 177 HYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + L + P S G N+ I + + +++ +R +ERGVG T +CG+ ACA Sbjct: 213 EADLNALD--LTRLPQVSPAAYPTGANVEIV-IGAPDAVRMRVYERGVGETLSCGTGACA 269 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA+ + V + GG + + W D++ V + G A EG L Sbjct: 270 VAVAAATRAGRGPGTVIPVDVPGGRVTVLW-DSDQVRLRGPAVLVSEGLL 318 >gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923] gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2] gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150] gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023] Length = 275 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + + N DGS CGNG+RC + + + + ET RG+ K + VDM Sbjct: 56 DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P DWK K +R H+ P F + G PH + FV DL + Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDTGVPHVVVFV-SDLSKVPV 160 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238 +G+ L H F+ EGVN+ + + L + T+ERG T +CG+ AS + + Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220 Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269 + + S+ + L+ + + VF+ G Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253 >gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 289 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 108/249 (43%), Gaps = 45/249 (18%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 A + F+ N DGS + CGNG+R R+L + T G+ ++G Sbjct: 66 ADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIAKEGD 125 Query: 116 ISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 I+V MG +L D + RS+ RN V+MGNPHA+ FV+ Sbjct: 126 ITVGMGGALLPEGDVTVSVGGRSWPA----------------RN---VNMGNPHAVAFVD 166 Query: 173 DDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 DLA G+LL P + +GVN+ + LR ERG G T +CG+ Sbjct: 167 ------DLAHAGDLLGPPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGT 220 Query: 228 AACASVVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ACA VA+ + T +V + GG L+I + + MTG A EG+++ Sbjct: 221 GACAVAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE 280 Query: 281 IKTGKWIKK 289 +W++ Sbjct: 281 ---AEWLES 286 >gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 275 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 88/223 (39%), Gaps = 27/223 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG R R+L + F T G + D S++V M Sbjct: 66 FMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTVQM 125 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177 G + + + PF V++GNPH + + D+ Sbjct: 126 GPAAITGTSVTVVAG--------------------QPFSGVAVNVGNPHLVSVTDTDIAG 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + H F GVNL V +L +R ERGVG T ACG+ A+V AS Sbjct: 166 LDLRDQPDF--DHDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASL 223 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L + S + GG + +TG A+ G+LD Sbjct: 224 HLAGKDTGESTVDIPGGRVSVTVGRGESTLTGPAEIVARGELD 266 >gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152] gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152] Length = 256 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 52/289 (17%) Query: 8 FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 F K +G GN ++ID R +D I+ + + HF D I+LI +DA D Sbjct: 5 FLKYQGTGNDFVMIDNRTKIFPKKNTDKISEIC---DRHFGIGADGIILIE--EDADYDF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGSE CGNG RC V F +M + TF + G A N D IS+ M Sbjct: 60 KMIYYNADGSET-FCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNND-FISLQM- 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +D F + N G H + V +DL Y + Sbjct: 117 -----------------IDVSEFQVK-------ENSIFTYTGTQHHVEMV-NDLEEYPVY 151 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + ++ + G N++ A+ + + +RT+E+GV T ACG+ A +A +H Sbjct: 152 ENGRKI-RNSYENPGSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALA---MH 207 Query: 241 KTNRA----VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 KT + +S+ + GG L + + + N +VF+ G A ++G+++I Sbjct: 208 KTGKTNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256 >gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] Length = 259 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 35/281 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +G GN + ID R N + + A D LI DA+ D + Sbjct: 5 FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLENDATADFKMVYF 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG+E CGNG RC+V F + TF I GI A N DG + + M Sbjct: 65 NADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATIN-DGFVKLKM------ 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 D D + +H FL + G+PH + V +++ +D+ + G Sbjct: 118 ------------QDVDTIKVNK-DHTFL------NTGSPHHVALV-NNIKQFDVKTEGAA 157 Query: 187 LAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN- 243 + ++ + G N++ + +RT+ERGV T +CG+ A +A L K N Sbjct: 158 IRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKANT 217 Query: 244 RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 + VS+ + GG L + + ++++ G A ++G+++ Sbjct: 218 QEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258 >gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1] gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1] Length = 291 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 95/236 (40%), Gaps = 44/236 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L ++ T G+ ++ G ++V M Sbjct: 72 FMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVHLDKRGDVTVSM 131 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFV--- 171 G R F G V RN V+MGNPHA+ FV Sbjct: 132 G-------------------RAEFPEGEVTVSVGDRSWPARN---VNMGNPHAVAFVDSL 169 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D YD F A + GVN+ + +R ERG G T +CG+ ACA Sbjct: 170 DDAGTLYDAPPFSPASA----YPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGACA 225 Query: 232 SVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + A +V + GG L+I + + + MTG A G+ D Sbjct: 226 VAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD 281 >gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] Length = 257 Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 126/298 (42%), Gaps = 63/298 (21%) Query: 6 VDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIML 51 +DF K +G GN ++ID R CH A D ++L Sbjct: 1 MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGA------------DGLIL 48 Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKE 110 + + D D + N DG+E CGNG RC+VRF S T F + G +A Sbjct: 49 LQN--DPEYDFRMVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMV 106 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + D SIS+ M D I DR + +N G+PH + F Sbjct: 107 S-DESISLKM----TDVTGI----------EDRQGLTFLN-----------TGSPHVVRF 140 Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 V DDL +D+ + G ++ P G N++ A+V ++ +RT+ERGV T +CG+ Sbjct: 141 V-DDLESFDVVAEGRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTG 199 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 A + + V ++ LGG L + ++ + +++ G AK+ + G + + Sbjct: 200 VTAVALVAHQQLGMPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257 >gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 283 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 120/288 (41%), Gaps = 34/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F KM G GN ++ID R T+ A F D ++LI + ++A D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSEEA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + N DGS CGNG RC RF + + R+ F T G L+ E ++ + Sbjct: 63 FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAG-LIEAEISGTAVLLT 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 M P R H+ GP + V G PHA+ F D++ Sbjct: 122 MTPP--------------GQCRLNLHLAGPTGEELTLH--TVDTGVPHAVLFC-DEIATV 164 Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 + +G+ HP F+ G N++ + L +RT+ERGV T ACG+ A A+ + + Sbjct: 165 PVKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVA 224 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279 L + +V G +L+ H + V + G A ++G L Sbjct: 225 SRLGRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272 >gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX] gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276] gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s] gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70] gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s] gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1] gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX] gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768] gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222] gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074] gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301] gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC] gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC] Length = 275 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + + N DGS CGNG+RC + + + + ET RG+ K + VDM Sbjct: 56 DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P DWK K +R H+ P F + G PH + FV DL + Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDTGVPHVVVFV-SDLSKVPV 160 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238 +G+ L H F+ EGVN+ + + L + T+ERG T +CG+ AS + + Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220 Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269 + + S+ + L+ + + VF+ G Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253 >gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] Length = 264 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 45/288 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R N + A A D D +M + D + D Sbjct: 3 IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQDKE--GYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F S T F+ + G AK + +G Sbjct: 61 MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKISAEG-------- 112 Query: 123 PILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 DW ++I +A +++RD +V++ G+PH + VE DL H + Sbjct: 113 ---DWVSLQMIDVA----QINRD------------GEAYVLNTGSPHYVKLVE-DLKHKN 152 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G+ + + + +G+N++ + E +RT+ERGV T ACG+ A +A Sbjct: 153 VYQEGHAIRNNATYRKKGININFVEPMA-EGYFVRTFERGVEDETYACGTGVTAVALAMA 211 Query: 238 CLHKTNRAVS--VKMLGGGLLIEW-HDN---NHVFMTGEAKKEWEGKL 279 ++ + ++ VK+LGG L I + +D ++F+ G AK +EGK+ Sbjct: 212 QHNQQSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKI 259 >gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] Length = 262 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 46/289 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 ++ F K G GN ++ID R + S N +S + F D ++L+ +DA+ Sbjct: 8 LMTFYKYHGTGNDFVMIDNRNL---LFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAA 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG+E CGNG RC+V F + + TF I G+ A E +G++ + Sbjct: 63 DFRMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEA-EITNGTVKLK 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M +D + I ++D G + V++ G+PH + +V D L + D Sbjct: 122 M----IDVQSI---------EKD----GECS--------VLNTGSPHFVQWVAD-LGNLD 155 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + + GN + + +EG+N++ A S + +RT+ERGV T +CG+ A A+ A Sbjct: 156 VRANGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAA--ALD 213 Query: 238 CLHKTNR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 L NR V VK+LGG L I N +++ G A++ + G++++ Sbjct: 214 FLKNGNRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262 >gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] Length = 275 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + + N DGS CGNG+RC + + + + ET RG+ K + VDM Sbjct: 56 DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P DWK K +R H+ P F + G PH + FV DL + Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDAGVPHVVVFV-SDLSKVPV 160 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238 +G+ L H F+ EGVN+ + + L + T+ERG T +CG+ AS + + Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220 Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269 + + S+ + L+ + + VF+ G Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253 >gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE] gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE] Length = 290 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 106/237 (44%), Gaps = 46/237 (19%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET---------IRGILVAKENRD 113 F+ N DGS + CGNG+R R+L +R E ++G+ +AK D Sbjct: 72 FMDYRNADGSVAEMCGNGVRVFARYL----QRAGLAAEGDLAVATRGGVKGVHLAK---D 124 Query: 114 GSISVDMGE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G+++V MG P ++ R++D RN V+MGNPHA+ F Sbjct: 125 GAVTVSMGHARLPKDGVRVTVDGRTWDA----------------RN---VNMGNPHAVAF 165 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + DL S + ++ +GVN+ + +R ERG G T +CG+ AC Sbjct: 166 VEDLAHAGDLRSV-PPFSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGAC 224 Query: 231 ASVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A VA+ + A +V + GG L+I + V MTG A EG +D Sbjct: 225 AVAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVID 281 >gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1] gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1] gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2] gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2] gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1] gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2] gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1] gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2] gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1] gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1] gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1] gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1] gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3] gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2] gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1] gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1] gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1] gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2] gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1] gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2] gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3] gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2] gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2] gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3] gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1] gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1] gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2] gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3] gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2] gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2] gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1] gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1] gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1] gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1] gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266] Length = 273 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 49/301 (16%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRSGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ + + D Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG +++ D I H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTV--------------RVESDEVTI---EHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D+ D ++ F +GVN+ ++ +R +ERG G T +CG+ Sbjct: 159 HTTVCDINLNDSPTW----RPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214 Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283 A A+ +A+ H+ V V GG +++ + D +TG A GK+++ Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272 Query: 284 G 284 G Sbjct: 273 G 273 >gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 46/235 (19%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106 DQ++++ Q DA IRI N DGSE +CGNG+RCV + L + K F ++ + Sbjct: 47 DQLLVLE--QSDKADAAIRIFNNDGSEAANCGNGLRCVGQLLIELLG-KEFVLIALKDRI 103 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 V E I V+MG + ++ H+ + +GN H Sbjct: 104 VRAEAGINGICVEMGPATV-------------INSTDAHVD------------IDIGNQH 138 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 +FF + + DL V + ++ + +D+ ERG G T ACG Sbjct: 139 RVFFEATEAFPSDL---------------NVEIVTGQIANHVYIDI--IERGAGRTLACG 181 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S ACA+ A R ++++M GG + + N V + G + + G I Sbjct: 182 SGACATAAAIWYSEGEVRPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235 >gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4] gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4] Length = 273 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 44/295 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN +++D R + S I+ L D ++++ + D + + Sbjct: 3 VFFTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG RC RFL FE EN+DG + GE Sbjct: 61 VYFNADGSRASFCGNGARCFARFL----------FEM--------ENKDG----EQGEVC 98 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS----------MGNPHAIFFVE-D 173 + + + + + + +L LR P + G PH + F + + Sbjct: 99 FMTEAGRIT-GWISGEAVKITLPTPKNLTLRIPLEIEGKSYELHKIDTGVPHVVLFEDCE 157 Query: 174 DLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 +L L G+ + H F EG N++ A + +RT+ERGV G T ACGS A Sbjct: 158 NLPRSTLEEIGSRIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTA 217 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDI 281 S + S + + + V + G L + + F+ G AKK + G ++I Sbjct: 218 SALISHLVLDMDCPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272 >gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 290 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V F K +GN LV D + + I + + +L + D +++ Sbjct: 4 VTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILAGPYLDQE-KMYVK 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGS-ISVDMG 121 I+N DGSEV GNGM ++L +++ S ++ TI G V N +G+ + + MG Sbjct: 63 ILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGTRVKISMG 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLYHY 178 P IP+ +M G + P+V +S+GNPH + ++ ++ Sbjct: 123 RPSFWSDEIPVTGERREMVNQTMMFGKI-------PYVTTCLSLGNPHCVIWM-SEISKD 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G F E VN + V ++ + +ERG G T A GS ACA+ A+ Sbjct: 175 QVCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALR 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L + + V M GG L +E ++ V+M GE Sbjct: 235 LGLADNNMYVHMPGGILEVEIKEDGTVYMVGEV 267 >gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] Length = 283 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 22/222 (9%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G+GN +V+D R +I ++ ++ D ++ A + + N Sbjct: 9 KYHGLGNDFVVLDRRQTGVDIDAE-LSRWMCDRRRGIGADGVLSLLPSQQGLARMVVHNA 67 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123 DGS + CGNG+RC V++L + + ET G+L + + + MG Sbjct: 68 DGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMGPA 127 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYH--YDL 180 L +P + F P+ HL LR VSMGNPH + L H Y+ Sbjct: 128 RLVAPNLP-----SGVTGQPFVEAPIPEHLGLRG-TAVSMGNPHLVL-----LGHPLYEA 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 G +L HP F + N+ RV + L + WERG GLT Sbjct: 177 ERLGPVLEHHPSFPDRTNVEFVRVDP-DGLTVVVWERGCGLT 217 >gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] Length = 290 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 32/235 (13%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 A + F+ N DGS + CGNG+R R+L + T G+ +DG Sbjct: 66 AEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIAKDGD 125 Query: 116 ISVDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 I+V MG+ +L + ++ RS+ RN V+MGNPHA+ FV Sbjct: 126 ITVGMGKALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFV- 165 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DDL H + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 DDLTHAGDLYAPPPFSPPAAYPDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACAV 225 Query: 233 VV-------ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V A + T +V + GG L+I + + MTG A EG++D Sbjct: 226 AVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID 280 >gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 101 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V DD+ + G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ Sbjct: 1 MIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTG 60 Query: 229 ACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267 ACA+VVA G L + + V V + GG L IEW V M Sbjct: 61 ACAAVVAGIRLGLLDE-GKTVEVILPGGTLYIEWACGGDVMM 101 >gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 212 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 12/212 (5%) Query: 71 GSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDMGEPILDW 127 G Q CGNG RCV +L + + F ++ ++ V +D +V+MG P+ + Sbjct: 4 GPAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKD-EYAVEMGLPVFEP 62 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-DLASFGNL 186 + IPL+ F + ++ + LR VSMGNPHA+ VE DL + G L Sbjct: 63 ERIPLS-GFPNACAE--YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAPVERIGPL 116 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + R V Sbjct: 117 LQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRVGRDV 176 Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V + GG L ++W V ++G A+ ++G Sbjct: 177 RVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 208 >gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] Length = 257 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 49/288 (17%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + IN L D ++L+ + D +D Sbjct: 3 ITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG+E CGNG RC+V F +K K+ TF + G+ + +I D Sbjct: 61 MVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKT-TFNAVDGL------HNATIKGD-- 111 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 I+ ++I +A +K N+ FL G+PH + V D++ +D+ Sbjct: 112 --IVSLQMIDVAEVKEKE----------NYSFL------DTGSPHHVQLV-DNVNGFDVF 152 Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + G + ++ ++ E G N++ + + +RT+ERGV T +CG+ A +A + Sbjct: 153 TEGKKI-RYGLYGEAGSNVNFV-TKNAKGYTVRTYERGVEDETLSCGTGVTAVALA---M 207 Query: 240 HKTNR----AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 HK+ + +K++GG L I + + +V++TGEAK+ ++G++ Sbjct: 208 HKSGNTNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255 >gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1] Length = 284 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 26/258 (10%) Query: 5 MVDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M+D KM G GN LV+D + + A ++ D ++ + + A+ Sbjct: 1 MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAAFR 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC RF R + + TFET RG V R +++D+ Sbjct: 61 --MRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFET-RGGDVHAVVRGNRVALDL 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179 ++ S + D + FL +G PHA+ F + + Sbjct: 118 APVSTGSAVLKAHASVEGCD--------FTYAFL------VVGVPHAVIFERERRRSIAE 163 Query: 180 LASFGNLL-AKHPMFSEGVNLSIARVTSLES--LDLRTWERGV-GLTAACGSAACASVVA 235 A G L ++ +F G N++ A ++S +S LD+ T+ERGV +T +CG+ + AS +A Sbjct: 164 YAVLGRALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAIA 223 Query: 236 SGCLHKTNRAVSVKMLGG 253 L V V GG Sbjct: 224 GRLLGVVGDEVRVVNPGG 241 >gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14] gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14] Length = 289 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 42/234 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG R R+L T G+ +DG I+V M Sbjct: 71 FMDYRNGDGSVAEMCGNGTRVFARYLQHAGLAAEGDLAIATRGGVKKIHIAKDGDITVGM 130 Query: 121 GE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+ P D + RS+ RN V+MGNPHA+ FV+ Sbjct: 131 GKARLPEGDVAVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166 Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DLA G+LL+ P + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 167 -DLADAGDLLSPPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 225 Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA+ + AV +V + GG L+I + + MTG A EG++ Sbjct: 226 AVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI 279 >gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] Length = 273 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 17/220 (7%) Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKR-KSFTFETIRGIL-VAKENRD-GSISVDMGEP 123 N DGS CGNG+RC ++ R++ + + ET+ G V + + D + +DMG Sbjct: 60 NGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRIDMGTW 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D K I + + + + +G + + + M H + FV D + +D + Sbjct: 120 DDDPKSIQVEGQSEPIMDYKLTVGDTS----VSVYSFFMSTVHTVVFVSD-AFAFDYSDI 174 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA----SVVASGCL 239 G + HP++ E N++ + + +L + T+ERGVG+T ACG+ ACA + GC Sbjct: 175 GKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEKKGCA 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K + V + G L IE D HV M G A++ +G+ Sbjct: 235 SK----LRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270 >gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] Length = 259 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 41/245 (16%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG 104 D I+LI + D +++ N DG E CGNG RC V F + + F+TI Sbjct: 45 DGIILIEKIKKY--DFYMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTI-- 100 Query: 105 ILVAKENRDGSISVDMGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 DGS + + I L+ K I L + K HI ++ Sbjct: 101 --------DGSHYASITKNIVSLNMKNIELVEVYKK------HI------------CINT 134 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221 G+PH I F+++ Y + +GVN++ +V L++RT+ERGV Sbjct: 135 GSPHHILFIDNKNYINVYNQGIKIRFNQKYIKKGVNVNFVKVKK-HILNVRTYERGVENE 193 Query: 222 TAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWE 276 T +CG+ AS +A+ + K + V+ LGG L +++ +F+ GE ++ Sbjct: 194 TLSCGTGVTASAIAAYNIKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYK 253 Query: 277 GKLDI 281 G L + Sbjct: 254 GILKL 258 >gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] Length = 261 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 41/245 (16%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG 104 D I+LI + D +++ N DG E CGNG RC V F + + F+TI Sbjct: 45 DGIILIEKIKKY--DFYMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTI-- 100 Query: 105 ILVAKENRDGSISVDMGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 DGS + + I L+ K I L + K HI ++ Sbjct: 101 --------DGSHYASITKNIVSLNMKNIELVEVYKK------HI------------CINT 134 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221 G+PH I F+++ Y + +GVN++ +V L++RT+ERGV Sbjct: 135 GSPHHILFIDNKNYINVYNKGIKIRFNQKYIKKGVNVNFVKVKK-HILNVRTYERGVENE 193 Query: 222 TAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWE 276 T +CG+ AS +A+ + K + V+ LGG L +++ +F+ GE ++ Sbjct: 194 TLSCGTGVTASAIAAYNIKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYK 253 Query: 277 GKLDI 281 G L + Sbjct: 254 GILKL 258 >gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237] gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237] Length = 258 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 40/284 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K +G GN +++D R + + A D LI + +D + Sbjct: 5 FYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLENEDGLDFKMVYF 64 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG+E CGNG RC+V F + S +F I G+ A ++G +S+ M + + + Sbjct: 65 NSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQM-KNVSE 122 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K P N +FL G+PH + V + L +++ G Sbjct: 123 IKEKP------------------NAVFL------DTGSPHHVQLVAN-LKDFNVKKEGAR 157 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 L +G N++ + +RT+ERGV T +CG+ A+ +A +HKT + Sbjct: 158 LRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIA---MHKTAKT 214 Query: 246 ----VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + +K LGG L I + + +VF+TG AK ++G++D+ Sbjct: 215 AGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258 >gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] Length = 258 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 49/288 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F+K +G GN ++ID R + D +S + F D +ML+ + S D Sbjct: 3 IPFSKYQGTGNDFVIIDNRTQY--FPKDDTKLISKLCDRKFGIGADGLMLLENH--PSAD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + + + TFE I G+ + SI D Sbjct: 59 FRMVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGL------HEASIEGD- 111 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I+ K+ D + P + FL G+PH I V DD+ ++ Sbjct: 112 ---IVQLKM---------QDVSKIKKEPT-YTFL------DTGSPHHIAMV-DDVEKVNV 151 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA--S 236 + G L ++ E G N++ + +RT+ERGV T +CG+ A +A + Sbjct: 152 KAEGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHT 211 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEA----KKEWE 276 L +N+ V++ + GG L +++ N ++++ G A K EW+ Sbjct: 212 NGLTTSNK-VALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGEWQ 258 >gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1] Length = 273 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 49/301 (16%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QPLRSGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ + + D Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTVRVESGEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D+ D ++ A F +GVN+ ++ +R +ERG G T +CG+ Sbjct: 159 HTTVCDINLNDSPTWRPRSA----FPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214 Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283 A A+ +A+ H+ V V GG +++ + D +TG A GK+++ Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272 Query: 284 G 284 G Sbjct: 273 G 273 >gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] Length = 256 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 119/278 (42%), Gaps = 30/278 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D + I AL T D +L+ + + D +R N Sbjct: 1 MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58 Query: 70 DGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG CGNG RC F T+ + + +F+ A + + M EP Sbjct: 59 DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEP----- 113 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 RD H +N F V+ G+PH I + +L +++ G + Sbjct: 114 ---------DTFRDDIHANGLNCHF------VNTGSPHTIIYT-GELETFNVHDTGYAVR 157 Query: 189 KH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + +F EG N++ +VT +SL +RT+ERGV T ACG+ A A+ + S L K + Sbjct: 158 NNNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTS 217 Query: 247 SVKMLGGG--LLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + G L +E+ D VF++G AK + G + + Sbjct: 218 VSVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255 >gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] Length = 284 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 117/282 (41%), Gaps = 25/282 (8%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM+G GN + +D R G D + A+ D ++ + S A Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70 Query: 63 FI-RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-ISVD 119 +I N DGS + CGNG RC R + S F T G + A + D S ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + +P K + + + + + H L F V+ G PHA+ VE DL + Sbjct: 131 LTDP----KDLRMDLTVE-----------IEHQELPLHF-VNTGVPHAVAVVE-DLEAVE 173 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + H F G N++ V L LRT+ERGV T ACG+ A AS V + Sbjct: 174 VWKLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVAR 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L T + GG L + ++ G A+ + G Sbjct: 234 KLGLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAF 275 >gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM] gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD] Length = 253 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 40/284 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F K +G GN ++++ R + + + + I L D ++L+ + D D Sbjct: 1 MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPDT--DFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG+E CGNG RC+V F + K TF I G+ A+ N + Sbjct: 59 MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKC-TFNAIDGLHEAEVNGN-------- 109 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++ K+I ++ + RD + FV++ G+PH + FV ++ D+ Sbjct: 110 --VVKLKMIDVSN----ISRD------------ASDFVLNTGSPHYVRFVS-EVEKLDVY 150 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + + EG+N++ E+L +RT+ERGV T +CG+ AS + S Sbjct: 151 KEGKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQ 209 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 K +V++K LGG L + + +V++ G A + ++G + Sbjct: 210 DKDKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253 >gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 285 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 15/215 (6%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGS-ISVD 119 +RI N DGS + GNG+R ++L +++K++ T G++ + N DGS + + Sbjct: 60 LRIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRIS 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLY 176 MG+ +P+ +R + + +F R + VS+GNPH + + + + Sbjct: 120 MGKLSFWSDEVPVTG-------ERREVINEDMVFGRTLYPVTCVSVGNPHCVIPMRE-IS 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + GN F E +N I +V ++ + T+ERG G T A G+ ACA+ + Sbjct: 172 QPLVCKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 L T V V M GG L +E +N V+MTGE Sbjct: 232 HKLGMTGNKVVVHMPGGELQVEIDENWEVYMTGEV 266 >gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] Length = 283 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 36/232 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 F+ N DG+ + CGNG R +L S + TF T G + D + D+G Sbjct: 75 FMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD-VWTADLG 133 Query: 122 EP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P +L + +A F + V MGNPHA VE H Sbjct: 134 SPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVESIDPH--- 172 Query: 181 ASFGNLLAKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G+L P+F E GVN+ + L +R +ERG G T +CG+ ACA +VA Sbjct: 173 GPVGDLY-DSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACAVMVA 231 Query: 236 S------GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V + GG L + W ++ V +TG A EG + Sbjct: 232 AAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283 >gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] Length = 261 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 41/286 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 V+F K +G GN ++ID R N++ + + + F D ++ + + D Sbjct: 3 VEFYKYQGTGNDFVIIDNR--RYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGED 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + K F I DG + Sbjct: 61 FKMVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAI----------DGQHEASI 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 ++ K+ ++ N L N ++ G+PH + D L + ++ Sbjct: 111 TNGVVSLKMQDVS----------------NIETLENALYLNTGSPHYVTLTSDIL-NKNI 153 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + + F EG N++ + +RT+ERGV T +CG+ A +A Sbjct: 154 KVDGAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHA 213 Query: 239 LHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 L KT++ +V + + GG L + ++ NN +V++TG A++ ++G++ Sbjct: 214 LSKTDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEV 259 >gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] Length = 281 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 41/299 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQD 57 M V F KM+G GN ++ID R + ++ A + D + I + + Sbjct: 4 MFGKSVPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPE 63 Query: 58 ASVDAFI-RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 S F+ + N DGS + CGN RC R + +A E Sbjct: 64 GSGLDFVWQFYNSDGSRAEMCGNASRCAGRLA--------------HALEIAGEQH--VF 107 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----------SMGNPH 166 D G PI + F +++ + + P L ++ + + G PH Sbjct: 108 GSDAG-PIK-------VQVFPELEEVKVQLTPPQGLVVKQTLEIDGEEYEYHFANTGVPH 159 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAA 224 + V D + D+ G H F+ G N++ ++ +SL +RT+ERGV T A Sbjct: 160 VVVQVAD-VEEVDIKKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYA 218 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 CG+ A V T+ AV V+ GG +L ++ +VF+ G A+ + G++ +++ Sbjct: 219 CGTGVSAVQVTLYEQGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLES 277 >gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] Length = 357 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 148/355 (41%), Gaps = 84/355 (23%) Query: 3 SSMVDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDDNTH------FDQIM 50 S ++F KM+G GN +V + + G +T + I+ T +H DQ++ Sbjct: 11 SYRINFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGF-TKKLSHRKLGIGCDQLI 69 Query: 51 LIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTF----- 99 +I D + A+ + +INCDG+ CGNG+RC +++ S+ ++ F Sbjct: 70 IIDDNPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDK 129 Query: 100 -----ETIRGI----------LVAKENRDGSISVDMGE--------------PILDWKLI 130 ET GI L KE + V+MG P K Sbjct: 130 IEQIIETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQS 189 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-YHYDLASFG----- 184 PL +D + + ++ VS+G + F++ ++ Y +S+G Sbjct: 190 PLESYMYTIDIGLPYCSKLECVY------VSVGVNQCVVFIDRNIELGYLDSSYGDFSKF 243 Query: 185 ---NLLAKHPMFSEGVN--LSIARVT--------SLESLDL-RTWERGVGLTAACGSAAC 230 N+ + VN + IA V LE+ + R ERG G T ACG+ AC Sbjct: 244 SMINIQEISDIIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGAC 303 Query: 231 ASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VAS G ++ ++ V+M GG LLI+W NN +F TG A ++ ++ I Sbjct: 304 GVAVASILKGYCNENTESI-VEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQILI 357 >gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] Length = 270 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 23/173 (13%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 Q + F+ N DGS + CGNG+R R+L F T G+ + + Sbjct: 60 QAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAE 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G ++VDMG P + L S +D R+ +G VSMGNPH +E Sbjct: 120 GDVTVDMGRPRV------LGESRTAVDGREYQGLG------------VSMGNPHLACLIE 161 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 D + DL+ A +F +GVN+ + +T + +R +ERG G T +C Sbjct: 162 DPVAGLDLSRPPRFDAA--VFPDGVNVELFNLTGDHRVTMRVYERGSGETRSC 212 >gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] Length = 258 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 48/286 (16%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K +G GN ++ID R + IN ++ + F D ++L+ + D +VD Sbjct: 5 FYKYQGTGNDFVMIDNR--SKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F M K F I G+ A +G +++ M Sbjct: 61 MVYFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATIT-NGVVNLKMN- 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + D + P + F + G+PH + V+D L + + Sbjct: 119 -----------------NVDEIVVKP-------SSFFLDTGSPHHVQLVKD-LGSFQVFE 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + EG N++ T + +RT+ERGV T +CG+ A +A +HK Sbjct: 154 EGKKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIA---MHK 210 Query: 242 TNR----AVSVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKL 279 + + + GG L + E++ ++V + G AK+ ++G++ Sbjct: 211 AKKVDSNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEM 256 >gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG] gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF] Length = 295 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 126/303 (41%), Gaps = 43/303 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59 S+ + F K G N ++I ++ DA+ AL D L+H + A+ Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60 Query: 60 -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---V 107 + F+ N DGS + CGNG+R R+L + T G+ + Sbjct: 61 GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120 Query: 108 AKENRDGS---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 AKE G+ I+V+MG +AR + R G LR V MGN Sbjct: 121 AKEEAPGAPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV D +L + +L + GVN+ + +L +R ERG G T + Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPRGVNVEFVVDRAPGALAMRVHERGSGETRS 223 Query: 225 CGSAACASVVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ +T R +V + GG L I + V MTG A EG Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283 Query: 278 KLD 280 +D Sbjct: 284 TID 286 >gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074] Length = 296 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 44/242 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD------- 113 F+ N DGS + CGNG+R R+L T G+ A +D Sbjct: 71 FMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDLPIATRGGVKHAHLAKDEPGAEPG 130 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G ++V MG L + +A + P H V+MGNPHA+ FV Sbjct: 131 TGPVTVAMGRAALPGGDVTVATAHGTA--------PALH--------VNMGNPHAVAFVA 174 Query: 173 DDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D LA G LL+ + + +GVN+ + +R ERG G T +CG+ Sbjct: 175 D------LADAGELLSAPAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETRSCGT 228 Query: 228 AACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ACA VA+ + AV +V + GG L+I + + V MTG A EG++D Sbjct: 229 GACAVAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAEGEID 288 Query: 281 IK 282 + Sbjct: 289 AE 290 >gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] Length = 162 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAFIRI 66 M G+GN +V+D + + + I L+ N H FDQ++++ D +D RI Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLA---NRHTGVGFDQLLVVEAPYDPELDFHYRI 57 Query: 67 INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV CGNG RC RF L ++ T G + + + + V+MGEP Sbjct: 58 FNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPE 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFL 154 + + P + K +D ++ G H + Sbjct: 118 FEPQKNPFPCT--KGRKDLYYQGNGTHCIM 145 >gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] Length = 261 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 41/287 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID +I + + + D +M + D D Sbjct: 3 IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFLTSHPD--YDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F + K F + G AK + +G Sbjct: 61 MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEG-------- 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +W + + D + RD +V++ G+PH + +E +L YD+ Sbjct: 113 ---NWVELQMI-DIDTIGRD------------GEAYVLNTGSPHYVARME-NLATYDVYH 155 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + + EG+N++ + L +RT+ERGV T ACG+ A V S LH Sbjct: 156 EGKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTA-VALSMALH 213 Query: 241 KTNRA---VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 K VK+LGG L +E+ N +VF+ G A+K +EG+L+ Sbjct: 214 KQQSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260 >gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39] gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39] Length = 270 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 126/293 (43%), Gaps = 51/293 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +G GN ++ID R T + NA+ N F D +ML+ D D D Sbjct: 12 IHFYKYQGAGNDFILIDNRDLSFKYTGN--NAVLQLCNRRFGIGADGLMLLQDHAD--YD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC+V F S T F + G AK + G+ Sbjct: 68 FEMLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGN----- 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----DLY 176 +D ++I + HIG +V++ G+PH + V + D+Y Sbjct: 123 ---WVDLQMIDID-----------HIGNDGE-----AYVLNTGSPHYVAQVNNLETLDVY 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 H + N K EG+N++ + L +RT+ERGV T ACG+ A V Sbjct: 164 HEGHSIRNNETYK----QEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTA-VAL 217 Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 S HK VK+LGG L I + N +VF+ G A++ +EG + I Sbjct: 218 SMAQHKGQNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270 >gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54] gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila LSv54] Length = 297 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 45/275 (16%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------NTHFDQIMLIH- 53 M+ + F KM G GN + ID R + AI A + D I+ I Sbjct: 4 MEKGALSFTKMSGAGNDFIFIDNR---EGAVPPAIRAKLAAHICPRMFSVGADGIIFIEK 60 Query: 54 -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN 111 D S D + N DGS + CGNG RC R+ SR + +F T+ GI+ A+ Sbjct: 61 SSIADFSWDFY----NADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVF 116 Query: 112 RDGSISVDMGEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D ++ + M P D++ + L + ++D FL G PHA+ Sbjct: 117 ADDTVCLQMTAP-EDYRSGLSLELGGTSCQVD------------FLNT------GVPHAV 157 Query: 169 FFVED-----DLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GL 221 +V++ + + + +G ++ H F+ G N++ SL +RT+ERGV Sbjct: 158 VYVDEVSEGQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDE 217 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256 T ACG+ A A+ + + V++ GG +L Sbjct: 218 TMACGTGAVAAALCFSKKYGFASPVNIVSSGGEIL 252 >gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1] gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] Length = 260 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 18/167 (10%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 ++ DA + I N DGS CGNG+RCVV L+ +K+ + ET G + + Sbjct: 50 LPSSTADAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWE 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 + VDM P ++ L+ + + R+ F I G PH + FVED Sbjct: 110 RVVVDMTLPDWNYTCHTLSHTLPGVPREVFSI--------------HTGVPHLVVFVEDV 155 Query: 174 DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219 DL +G+ L H F +G N++ + LRT+ERG+ Sbjct: 156 SCVPVDL--WGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGL 200 >gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] Length = 253 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 ++ DA + I N DGS CGNG+RCVV L+ +K+ + ET G + + + Sbjct: 46 STADAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVV 105 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLY 176 VDM P ++ L+ + + R+ F I G PH + FVED Sbjct: 106 VDMTLPDWNYTCHTLSHTLPGVPREVFSI--------------HTGVPHLVVFVEDVSCV 151 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219 DL +G+ L H F +G N++ + LRT+ERG+ Sbjct: 152 PVDL--WGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGL 193 >gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78] gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78] Length = 295 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 125/303 (41%), Gaps = 43/303 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59 S+ + F K G N ++I ++ DA+ AL D L+H + A+ Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60 Query: 60 -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---V 107 + F+ N DGS + CGNG+R R+L + T G+ + Sbjct: 61 GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120 Query: 108 AKENRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 AKE G I+V+MG +AR + R G LR V MGN Sbjct: 121 AKEEAPGFPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV D +L + +L + GVN+ + +L +R ERG G T + Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPRGVNVEFVVDRAPGALAMRVHERGSGETRS 223 Query: 225 CGSAACASVVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ +T R +V + GG L I + V MTG A EG Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283 Query: 278 KLD 280 +D Sbjct: 284 TID 286 >gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 308 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 120/299 (40%), Gaps = 39/299 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDAS-- 59 M DF K + +GN L++D RG + ++ + L D + L+ DA Sbjct: 1 MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60 Query: 60 -VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAK--EN 111 A +RI N DGSE GNG+R +L R+ FT T G + + Sbjct: 61 GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120 Query: 112 RDGSISVDMGEP-----------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 DG + V MG ++PLA + GP + + + + + Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGA-----------GPGDEVTVTD---L 166 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 +G PH + D + + G LA HP EG N+ RV +LD+ WER G Sbjct: 167 HLGVPHTVVL-RDAIDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAG 225 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A GS ACA+ + V+V+M GG + + + + G A++ G L Sbjct: 226 PVPASGSGACAAAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVL 284 >gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2] gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2] Length = 288 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 33/293 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD------------AINALSTDDNTHFDQIMLIH 53 V F K G GN V+D D+ D A LS + D ++ + Sbjct: 7 VPFEKFHGTGNDFFVVDA----DDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLA 62 Query: 54 -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + + + ++ DGS CGNG R + R +T G + + Sbjct: 63 LESRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTR--RASL 120 Query: 113 DGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG+ ++V+MG P + +PLA + +D + V L + V+ G PHA+ FV Sbjct: 121 DGTDVTVEMGAPSFAPRDVPLASDDELVDTE------VEGLTVT---AVNTGVPHAVAFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230 +D L S + +F EG N+++A RT+ERGV G T +CG+ A Sbjct: 172 DDVDDVD-LESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAV 230 Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A V A+ L + + V+V GG L + D + G A E +G+ DI Sbjct: 231 AVVAAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283 >gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] Length = 284 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 24/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQD 57 + S+M F KM+G GN ++ D + + ++ A D ++ + + + Sbjct: 4 LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 D N DGS + CGNG RC R L R + + F T G + A+ G Sbjct: 64 QGHDFDWHFFNADGSRAEMCGNGSRCAAR-LAHRLGLAGREQVFGTDAGAVRAQVKDKGK 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V + P + +L + +F++ H V+ G PHA+ + DD+ Sbjct: 123 VRVQL-TPAENLQLHSIL-NFEESSPVNLH-------------SVNTGVPHAV-IICDDV 166 Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 + +++ G ++ HP F+ G N++ +V + LRT+ERGV T ACG+ A ASV Sbjct: 167 HKVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASV 226 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V + L +V V G L VF+TG+A ++G L + T Sbjct: 227 VVASALGLCANSVQVVTSGKEHLNIDLQEQGVFLTGKADFIYQGMLFLDT 276 >gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] Length = 278 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 32/295 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ D R D++ A + + D ++L+ + D Sbjct: 4 LQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVEN--SDQCDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGSE + CGN RCV RF +++ + TFET+ G++ A+ +G Sbjct: 62 KWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEV---------LG 112 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E + A D D F+ V+ N ++ G PH + V ++ D+ Sbjct: 113 ETV-------KAGLTDPTDVKYFYALDVDGTTC-NVTSMNTGVPHVVLLV-GNIEKPDVE 163 Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + H F+ G N++ E L +RT+ERGV G T ACG+ A A+ +A Sbjct: 164 ELGRKIRYHEAFAPAGTNVNFVEFRRGE-LAVRTYERGVEGETLACGTGAVAAALARVAA 222 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V V GG L + ++F+ G+A + G++ K +K Sbjct: 223 DAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQK 277 >gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] Length = 292 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 28/296 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 ++ +++F KM G GN +V+D R + + A D ++ + + Sbjct: 3 KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSIS 117 +R N DGS CGNG RC+ RF + ++ FET GI A+ D Sbjct: 63 DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEVPDDPQAP 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + +P A +++ R P++ F F+ + G H + FV + Sbjct: 123 VRL--------YLPPAGTYEPNPR---LATPLDTQFESVAFIWT-GTEHLVCFV-PAVEA 169 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLES----LDLRTWERGV-GLTAACGSAACA 231 +A +G L P G N+ V L RT+E+GV T ACG+ A A Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229 Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + + + + + ++V M GG L + + + +F+ G A+ + G +++ Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285 >gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] Length = 262 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/288 (24%), Positives = 125/288 (43%), Gaps = 42/288 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F K +G GN ++ID R + N + + F D ++L+ + D Sbjct: 3 ISFYKYQGTGNDFVMIDNR--SEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + FE + G A + G +++ M Sbjct: 59 FKMVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + D +++ N+ FL + G+PH + V D+L D+ Sbjct: 119 -------------KDVDTVNQQE------NYTFL------NTGSPHHVQLV-DNLVELDI 152 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + ++ + G N++ + +RT+ERGV T +CG+ A +A Sbjct: 153 KTEGAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQ 212 Query: 239 LHKT-NRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 KT N + + + GG L +++ + +VF+ G A +EGK+D+ Sbjct: 213 TGKTSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDL 260 >gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021] gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021] Length = 268 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 25/230 (10%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 Q + F+ N DG + CGNG+R R+L F T G+ + Sbjct: 60 QAGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAET 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G ++VDMG P L + R R + + LR V MGNPH + D Sbjct: 120 GDVTVDMGTPRL-------------LGRSRTTVAGQEYEGLR----VDMGNPHLACAIGD 162 Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + DL+ + A P F GVN+ + + +R +ERG G T +CG+ A AS Sbjct: 163 PVAQLDLS---HQPAFDPEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVAS 219 Query: 233 VVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA+ L +T +V++LGG + + D ++ G A G L + Sbjct: 220 AVAAAHLAGETTGTWAVEVLGGTVTVTL-DERTSYLAGPAVLVASGDLSL 268 >gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] Length = 261 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 61/299 (20%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----------DQIMLIH 53 S + F K +G GN +++D R N T++ HF D +ML++ Sbjct: 2 SAIHFYKYQGTGNDFVIMDNRNGEYNFL--------TEEQVHFLCDRRFGIGADGLMLLN 53 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + D ++ N DG E CGNG RC+V F ++ T E + L + Sbjct: 54 --KQEGYDFGMKYYNADGRESSMCGNGGRCLVAF----ARKMGLTDEKLS-FLAVDGPHE 106 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++ D DW + + D I + H +L + G+PH + FV Sbjct: 107 ATLKGD------DWVNLKM------QDVSGVEINSL-HSYL------NTGSPHYVKFVA- 146 Query: 174 DLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLD----LRTWERGV-GLTAACGS 227 D+ D+ + G + + F+ EG N++ ++SLD +RT+ERGV T +CG+ Sbjct: 147 DVKAVDVYNEGKQIRYNDRFAKEGTNVNF-----VQSLDKGIFVRTYERGVEDETYSCGT 201 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281 A+ + + V V+ LGG L + + N++++ G A +EG + + Sbjct: 202 GVTAAALMTAGAETKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITL 260 >gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] Length = 259 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/285 (22%), Positives = 125/285 (43%), Gaps = 40/285 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K + GN ++I+ + I L + D ++LI ++ D ++ Sbjct: 3 INFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDFYM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC V F + + + F++I G A S+ Sbjct: 61 KYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKSIDGYHYA--------SIKQNI 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L+ K + L + + + H++ ++ G+PH I F ++ + + ++ Sbjct: 113 VSLNMKNVELVKVYPE------------HIY------INTGSPHHILF-KEKINNINVYK 153 Query: 183 FGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + GVN++ ++ L++RT+ERGV T +CG+ AS +A+ + Sbjct: 154 EGKKIRFNQKYIKTGVNVNFVKINK-NILNVRTYERGVENETFSCGTGVTASAIAAYHIK 212 Query: 241 KT-NRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280 K + VK LGG L +++ +F+ GE ++G ++ Sbjct: 213 KILYNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257 >gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 291 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 47/228 (20%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFET---IRGILVAKENRDGSIS 117 F+ N DG+ Q CGNG+R R+L T R + + T +R + + + DG + Sbjct: 71 FMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTVPIATRSGVRQVHIPGGDPDGHPT 130 Query: 118 VDMGEPILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 V MG P K+ R++ P H V +GNPHA+ V+ Sbjct: 131 VAMGRPAFPGPDGIKVTANGRTW-----------PALH--------VDVGNPHAVVQVD- 170 Query: 174 DLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 DLA G+L + + EGV + L LR ERG G T +CG+ Sbjct: 171 -----DLADPGDLRTPPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTG 225 Query: 229 ACASVVASGCLHK-----TNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 A A+V A LH+ T R +V + GG L ++ + + ++G A Sbjct: 226 AVAAVAAV--LHREPGVPTGR-YTVDVAGGSLAVDVAPDGDMHLSGPA 270 >gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74] gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74] Length = 295 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 102/245 (41%), Gaps = 39/245 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD------G 114 F+ N DGS + CGNG+R R+L + T GI A D G Sbjct: 71 FMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGIKRAHLANDEAPGVPG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFFVE 172 I+V+MG +AR + R G P H V MGNPHA+ FV Sbjct: 131 EITVEMG----------VARLPEGEVEVRVGSGTRPATH--------VDMGNPHAVTFVT 172 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D +L +L + +GVN+ + +L +R ERG G T +CG+ ACA Sbjct: 173 DLAEAGELREAPEVLPAS-AYPQGVNVEFVVERAPGALAMRVHERGSGETRSCGTGACAV 231 Query: 233 VVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 VA+ +T R +V + GG L I + V MTG A EG +D G Sbjct: 232 AVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGTID---GD 288 Query: 286 WIKKN 290 W+ + Sbjct: 289 WLAAS 293 >gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 90/232 (38%), Gaps = 32/232 (13%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENR-DGS 115 F+ N DG+E Q CGNG+R R+L T T G+ + + R G Sbjct: 74 FMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRTRFHGP 133 Query: 116 ISVDMGEPILDWK----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++V MG P L + R++ + V MGNPHA+ V Sbjct: 134 VTVQMGRPRLPGPDHITVTAGTRTWPALH-------------------VDMGNPHAVALV 174 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DDL H + + + G + L LR ERG G T +CG+ ACA Sbjct: 175 -DDLTHPGPLTTPPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGACA 233 Query: 232 SVVASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V A+ V GG L + H + + +TG A+ G + + Sbjct: 234 AVAAATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285 >gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1] gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1] gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1] gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2] gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4] gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1] gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3] gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1] gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1] gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1] gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1] gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2] gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1] gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1] gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2] gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3] gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2] gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1] gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2] Length = 273 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 118/297 (39%), Gaps = 41/297 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58 M F K G GN +++D + D +TS + L D T Q + D +D Sbjct: 1 MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55 Query: 59 SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DG+ + CGNG+R R+L T RM T G+ + + Sbjct: 56 NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDG 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172 G +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 116 GDVSVTMGTVRVESGKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTD 158 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAV 218 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284 A+ +A+ H+ V V GG +++ D +TG A GK+D+ G Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] Length = 295 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 123/303 (40%), Gaps = 43/303 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59 S+ + F K G N ++I ++ DA+ AL D L+H + A+ Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60 Query: 60 -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110 + F+ N DGS + CGNG+R R+L + T G+ A Sbjct: 61 GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 +D G I+V+MG +AR + R G LR V MGN Sbjct: 121 AKDEAPGVPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV D +L + +L + GVN+ + +L +R ERG G T + Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPHGVNVEFVVDRAPGALVMRVHERGSGETRS 223 Query: 225 CGSAACASVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ + A +V + GG L I + V MTG A EG Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283 Query: 278 KLD 280 +D Sbjct: 284 TID 286 >gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] Length = 317 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 125/315 (39%), Gaps = 55/315 (17%) Query: 3 SSMVDFAKMEGIGNK-ILVIDMRGC--------------HDNITSDA-INALSTDDNTHF 46 + V F K G GN +L+ D G H I +D I A+ + Sbjct: 18 APRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPEG 77 Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFET 101 + ++ H + F+ N DGS + CGNG+R V FL + ++ T T Sbjct: 78 EALLAEH----PEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGT 133 Query: 102 IRGILVAKENRDGSISVDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 G+ G ++DMG LD +L A S D M R P R V Sbjct: 134 RAGVKAVTRLEHG-YAIDMGPWCYLDPELAEEAAS-DSMVRAHGLTDP------RPALSV 185 Query: 161 SMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL-------- 210 SMGNPH + + DL DL G P G N+ V + E L Sbjct: 186 SMGNPHTVVPLASFADLQGLDL---GRAPEVDPAPPHGTNVEF--VAAHEPLVREGVGRV 240 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE----WHDNNH 264 +R ERGVG T +CG+ ACA VA S V++ GG L ++ H Sbjct: 241 RMRVHERGVGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEH 300 Query: 265 VFMTGEAKKEWEGKL 279 V ++G A+ ++G+L Sbjct: 301 VVLSGPAELVFDGEL 315 >gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 126/287 (43%), Gaps = 39/287 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K +G GN ++ID R + I L D ++L+ + D+ D + Sbjct: 5 FFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKMIY 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E CGNG RC+V F + TFE + G+ A + ++S+ M + Sbjct: 65 FNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSAIIKGE-TVSLKM----I 119 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D + L+R M+ G+PH + FV DD+ +D+ + G Sbjct: 120 DVPTVNLSREASFMN---------------------TGSPHHVAFV-DDVKDFDVFAQGR 157 Query: 186 LLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + P + G N++ +V + + +RT+ERGV T +CG+ A+ + S +K Sbjct: 158 RIRNLPNYEAIGGTNVNFIQVIDGD-VHVRTYERGVEDETYSCGTGVTAAAITSKMANKV 216 Query: 243 -NRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V V GG L +++ + ++++ G A +EG + KT Sbjct: 217 EDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263 >gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 277 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 31/217 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R FL T G E D + Sbjct: 68 FMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFRAGI 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + P S D ++ + V +GNPHA+ F+ D+ DL Sbjct: 128 GH--VQVASQPTHVSLDGVEYEAT--------------TVDVGNPHAVVFLPADV---DL 168 Query: 181 ASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 S L HP ++ G N+ RV S SL +R +ERG G T +CG+ A+ Sbjct: 169 ES---LDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAA 225 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 A G V + GG L +E D++ +TG A Sbjct: 226 AQGARLGEQGRFGVDVPGGHLEVEL-DDSMAHLTGPA 261 >gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis] Length = 205 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 99/242 (40%), Gaps = 53/242 (21%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K +G GN ++ID R DA + D N H L H D I Sbjct: 1 MIHFWKYQGAGNDFIMIDDR--------DA----TFDINDHEKVAFLCHRRFGVGGDGLI 48 Query: 65 RI------------INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 I N DG CGNG RC VRF + F+T A Sbjct: 49 LIRLKEGYDFEMVYFNADGHVGTMCGNGGRCAVRFAHTLG-----LFDTTTSFWAA---- 99 Query: 113 DGSISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG+ + E ++ K+ P D H F+ G+PH + F Sbjct: 100 DGAHEATLDEQQLVHLKMNPPGEIEINAD----------HYFM------DTGSPHYVRF- 142 Query: 172 EDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 E DL ++D + G + + F+ EG N++ A+VT +SL +RT+ERGV T ACG+ Sbjct: 143 EKDLDNFDCVTEGKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGV 202 Query: 230 CA 231 A Sbjct: 203 TA 204 >gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] Length = 266 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 26/218 (11%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 F+ N DGS + CGNG+R L + + + F +T G+ ++ ++ D ++ Sbjct: 58 FMDYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQADSTDATV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175 V MG ++ + AR D F V +GNPH + Sbjct: 118 KVGMGR--VEVTGVSTARMGD---------------FDFAGLGVDVGNPHLAAVIPGLTA 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D F H F EGVN+ + + + +R WERGVG T +CG+ A+ A Sbjct: 161 AELDAMQFAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARA 220 Query: 236 SGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + N V+V + GG + +E D MTG +K Sbjct: 221 ALADAGVENGTVTVNVPGGAIEVELSDGE-ALMTGPSK 257 >gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58] gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58] Length = 315 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 35/241 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R V FL + +S T T G+ G + Sbjct: 88 FMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKTVSRLAHG-YA 146 Query: 118 VDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DD 174 +DMG LD +L A S D M P R VSMGNPH + + +D Sbjct: 147 IDMGPWSYLDPELAEEAAS-DAMVLAAGLADP------RPALSVSMGNPHTVVPLASFED 199 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL--------DLRTWERGVGLTAACG 226 L DL + P S G N+ V + E L +R ERGVG T +CG Sbjct: 200 LEGLDLTRAPEV---DPAPSHGTNVEF--VAAHEPLVREGVGRARMRVHERGVGETQSCG 254 Query: 227 SAACASVVASGCLHKTNRAVS--VKMLGGGLLIEW--HDNN--HVFMTGEAKKEWEGKLD 280 + ACA VA + S V++ GG L +++ H + HV + G A+ ++G+L Sbjct: 255 TGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAELVFDGELT 314 Query: 281 I 281 + Sbjct: 315 V 315 >gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 321 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107 F+ N DGS + CGNG+R R+L T G+ Sbjct: 84 FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 143 Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G+I+V MG +L + + + AR + P H VSMGN Sbjct: 144 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 184 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV+D + +L H ++ +GVN+ + +R ERG G T + Sbjct: 185 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 243 Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ + AV +V + GG L+I + V MTG A EG Sbjct: 244 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 303 Query: 278 KL 279 + Sbjct: 304 TI 305 >gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] Length = 265 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 44/283 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 DF +EG + L I + H + +D + L + IR+ Sbjct: 12 DFLIVEGKADAALAIALCQRHTGVGADGVEFLE----------------KTGPHSGTIRL 55 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKE-NRDGS---ISVD 119 +N DGS + GNG RCV ++ + + T T G + + DG+ ++ Sbjct: 56 VNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMATG 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LY 176 MG P + ++ L + VV GNPH + V+ + Sbjct: 116 MGVPTVRHGMVKLPQGITVEGS-----------------VVHTGNPHFVIEVQSGDFTVQ 158 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +D G + HP F N+ ++ +R +ERGVG T + G+ CAS A+ Sbjct: 159 GHDWREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAAT 218 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + + V GG +EW + +TG A+ +G+ Sbjct: 219 IAAARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261 >gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2] gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2] Length = 273 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 15/219 (6%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-VAKENRDG-SISVDMGEP 123 N DGS CGNG+RC ++ + + ET+ G+ V + + D + +DMG Sbjct: 60 NADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRIDMGT- 118 Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 W P + D + + PV + + M H + FV D + +D Sbjct: 119 ---WDDEPKSIQVDALKEPVMGYELPVGDKSV-TVYSFFMSTVHTVVFVSD-AFAFDYNE 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + H ++ E N++ ++ +L + T+ERGVG+T ACG+ ACA+ + K Sbjct: 174 IGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAH--EKK 231 Query: 243 NRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A ++K++ G L I+ D HV M G A++ +G++ Sbjct: 232 GCAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270 >gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] Length = 314 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 41/260 (15%) Query: 4 SMVDFAKMEGIGNK-ILVIDMRGCHDNITSDAINAL-------STDDNTHFDQIMLIHDF 55 S + F+K G GN +LV D G H +I +D + AL D + + Sbjct: 17 SGLRFSKGHGTGNDFVLVADPEGAH-SIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEG 75 Query: 56 QDASVDA-----FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGI 105 ++ V A F+ N DGS + CGNG+R V FL + + T T G+ Sbjct: 76 RELLVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGV 135 Query: 106 LVAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMG 163 +G +VDMG W+ I P + MD + L + P + VSMG Sbjct: 136 KTVVRTGEG-YAVDMG----PWEFIFPGEATAKAMDS----LVTAEGLEVPRPALSVSMG 186 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKH--PMFSEGVNLSIARVT------SLESLDLRTW 215 NPH + + + +LA A P+ + G N+ + + S+ +R Sbjct: 187 NPHTVVALAE---LSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVH 243 Query: 216 ERGVGLTAACGSAACASVVA 235 ERGVG T +CG+ ACA+ VA Sbjct: 244 ERGVGETQSCGTGACAAAVA 263 >gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 304 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107 F+ N DGS + CGNG+R R+L T G+ Sbjct: 67 FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 126 Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G+I+V MG +L + + + AR + P H VSMGN Sbjct: 127 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 167 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV+D + +L H ++ +GVN+ + +R ERG G T + Sbjct: 168 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 226 Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ + AV +V + GG L+I + V MTG A EG Sbjct: 227 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 286 Query: 278 KL 279 + Sbjct: 287 TI 288 >gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107 F+ N DGS + CGNG+R R+L T G+ Sbjct: 81 FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 140 Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G+I+V MG +L + + + AR + P H VSMGN Sbjct: 141 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 181 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV+D + +L H ++ +GVN+ + +R ERG G T + Sbjct: 182 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 240 Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA VA+ + AV +V + GG L+I + V MTG A EG Sbjct: 241 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 300 Query: 278 KL 279 + Sbjct: 301 TI 302 >gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis V9] Length = 294 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%) Query: 10 KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57 K +G GN ++ D G H D I D ++ I HD Q Sbjct: 3 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 62 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 V+ F+ N DG+ + CGNG R +FL + G+L +E Sbjct: 63 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 110 Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162 + G + +P L R ++D + +G + + P V M Sbjct: 111 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 168 Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211 GNPH + VED + L G L L + P S G N+ AR+ +L++ Sbjct: 169 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 226 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +R +ERG G T ACG+ CA+ + + + +++ GG + ++ D++ V +TG A Sbjct: 227 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 284 Query: 272 KKEWEGKL 279 E +L Sbjct: 285 ALTAEFRL 292 >gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] Length = 300 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%) Query: 10 KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57 K +G GN ++ D G H D I D ++ I HD Q Sbjct: 9 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 68 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 V+ F+ N DG+ + CGNG R +FL + G+L +E Sbjct: 69 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 116 Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162 + G + +P L R ++D + +G + + P V M Sbjct: 117 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 174 Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211 GNPH + VED + L G L L + P S G N+ AR+ +L++ Sbjct: 175 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 232 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +R +ERG G T ACG+ CA+ + + + +++ GG + ++ D++ V +TG A Sbjct: 233 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 290 Query: 272 KKEWEGKL 279 E +L Sbjct: 291 ALTAEFRL 298 >gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 86 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVR 86 RI N DGSEV CGNG RC R Sbjct: 61 YRIFNADGSEVSQCGNGARCFAR 83 >gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] Length = 300 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 34/221 (15%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENR 112 A + F+ N DGS + CGNG+R +L + ++ +SF T I+ + V + Sbjct: 68 AGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHVTVIPDPL 127 Query: 113 DGSIS---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G VDMG+ W+L +FD + R V MGNPH + Sbjct: 128 GGDTPWYKVDMGK----WQLPGGGEAFDAT------VETTGVRVARPGLTVDMGNPHTVV 177 Query: 170 FVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV-----TSLESLDLRTWERGVGL 221 L H + L P G N+ + + +L +R ERGVG Sbjct: 178 A----LAHAEELQAAKLHEPPHVEPTPPAGTNVEYIVIEPDNDPTTGTLRMRVHERGVGE 233 Query: 222 TAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIE 258 T ACG+ ACAS +A +G + +V GG + IE Sbjct: 234 TYACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIE 274 >gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] Length = 259 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 39/284 (13%) Query: 8 FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F K +G GN ++ID R G D+++ I L D LI + D + Sbjct: 5 FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKL-CDRRFGVGADGLIKINSISGYDFEVDY 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGNG RC V F + + +F I G+ E + Sbjct: 64 YNSDGSK-SFCGNGARCSVAFAHELGIIKDHVSFMAIDGVH---------------EAVK 107 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 L+ L + D + D H FV++ G+PH I F E+ + +D+ S+G Sbjct: 108 KGSLVFLKMN-DVSEIDVSH----------KEFVLNTGSPHFIHFTEN-VADFDIVSYGK 155 Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG--CLHK 241 + + EG+N++ S +++T+ERGV T +CG+ A+ +A G L Sbjct: 156 QIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLIV 215 Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +VK GG L + + N ++++ G A+ ++G+ ++ Sbjct: 216 GEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259 >gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis BB-12] Length = 357 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%) Query: 10 KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57 K +G GN ++ D G H D I D ++ I HD Q Sbjct: 66 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 125 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 V+ F+ N DG+ + CGNG R +FL + G+L +E Sbjct: 126 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 173 Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162 + G + +P L R ++D + +G + + P V M Sbjct: 174 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 231 Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211 GNPH + VED + L G L L + P S G N+ AR+ +L++ Sbjct: 232 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 289 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +R +ERG G T ACG+ CA+ + + + +++ GG + ++ D++ V +TG A Sbjct: 290 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 347 Query: 272 KKEWEGKL 279 E +L Sbjct: 348 ALTAEFRL 355 >gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614] gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614] Length = 279 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 41/280 (14%) Query: 8 FAKMEGIGNK-ILVIDMRGC-HDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA-- 62 F K G N +L+ D+ G H ++++D + AL D ++ + DA Sbjct: 15 FLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRV-----LRTDAGW 69 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVD 119 F+ N DGS + CGNG+R VR L + +T G+ V + D I+ D Sbjct: 70 FMDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDGD-LITAD 128 Query: 120 MGEP-ILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P +L ++ + S+ P H V MGNPHA+ FV+ H Sbjct: 129 MGRPRVLGETVVGVGTVSW-----------PARH--------VDMGNPHAVAFVDSLDPH 169 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + ++ P F +G N+ + +R ERG G T +CG+ ACA +VA+ Sbjct: 170 GPVGPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAA 229 Query: 237 GCL-----HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 + A V + GG L + W ++ V +TG A Sbjct: 230 AVADGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPA 269 >gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] Length = 275 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 25/222 (11%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L T F T G + D S++V M Sbjct: 66 FMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTVHM 125 Query: 121 GEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G + + + R F + V +GNPH + ++DD+ Sbjct: 126 GPATITGTSVTVVAGRPFSGV-------------------AVDVGNPHLVSLLDDDVAGL 166 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + H +F GVNL +L +R ERGVG T ACG+ A+V A+ Sbjct: 167 DLREQPDF--DHDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L T+ S + GG + ++G A+ G+LD Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGASTLSGPAEIVARGELD 266 >gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] Length = 273 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 21/165 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ G +SVDM Sbjct: 69 FMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGPSGDVSVDM 128 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P++ R R + + LR VSMGNPH V+ + DL Sbjct: 129 GAPLV-------------QGRGRARLAGEDFTGLR----VSMGNPHLACPVDRPVAELDL 171 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + + F +GVN+ + R+ +++R ERG G T +C Sbjct: 172 TRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSC 214 >gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] Length = 303 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 102/242 (42%), Gaps = 49/242 (20%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-------LVAKENRD 113 F+ N DGS + CGNG+R R+L + + T GI V Sbjct: 78 FMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHLAKAVPGSGVA 137 Query: 114 GSISVDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G I+V MG +L + ++ RS+ RN V+MGNPHA+ F Sbjct: 138 GDITVSMGRAVLPEDGVTVSVGGRSWPA----------------RN---VNMGNPHAVAF 178 Query: 171 VEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 VE +L G+LL P ++ +GVN+ + +R ERG G T +C Sbjct: 179 VE------ELDHAGDLLTVPPFTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETRSC 232 Query: 226 GSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA VA+ + AV +V + GG L I + + MTG A EG Sbjct: 233 GTGACAVAVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAEGM 292 Query: 279 LD 280 +D Sbjct: 293 ID 294 >gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] Length = 314 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/257 (28%), Positives = 108/257 (42%), Gaps = 43/257 (16%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLI---------H 53 F+K G GN +LV D G H I + + AL N H D ++ Sbjct: 21 FSKGHGTGNDFVLVADPEGEH-TIDAGHVAALC---NRHLGIGGDGLIRAVPSRFLPEGR 76 Query: 54 DFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGIL 106 + A+ DA F+ N DGS + CGNG+R V FL + + T G+ Sbjct: 77 EILAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLK 136 Query: 107 VAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGN 164 DG +VDMG W+ I P + MD + L + P + VSMGN Sbjct: 137 TVVRTADG-YAVDMGP----WEFIFPGEATAKAMDS----LVTAEGLEVPRPALSVSMGN 187 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERG 218 PH + + + L + A P+ + G N+ + + S+ +R ERG Sbjct: 188 PHTVVALAE-LGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERG 246 Query: 219 VGLTAACGSAACASVVA 235 VG T +CG+ ACA+ VA Sbjct: 247 VGETQSCGTGACAAAVA 263 >gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] Length = 279 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 52/293 (17%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56 F KM+G GN +VID R +S +D + + + H F Sbjct: 11 FYKMQGSGNDFIVIDNRA----------KTISPEDMPRWAKTLCPHAFSIGADGIIFLEI 60 Query: 57 DASVDAFIR--IINCDGSEVQSCGNGMRC--VVRFLTSRMKRKSFTFETIRGILVAKENR 112 D S A R N DGS + CGNG RC ++ ++ K +L Sbjct: 61 DDSGQAATRWHFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHL-------MLTDAGTV 113 Query: 113 DGSISVDMGEPILDWKLIP---LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + GE +D +L P +A +F +D D + F + + G PHA+ Sbjct: 114 HAQVFPEAGE--VDVQLTPARDMALNF-TLDLD-------DRTFAAH--FANTGVPHAVI 161 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGS 227 V D+ D+ G + H F+ G N + +V S L LRT+ERGV T ACG+ Sbjct: 162 -VTPDVKSIDVKGLGAKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGT 220 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKL 279 A ASV + L V GG +L I H ++ +F+ G+A+ ++G+ Sbjct: 221 GAAASVAVAHALGLCESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272 >gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21] gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21] Length = 263 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 40/282 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65 F K +G GN ++ID R + A+ A D D +ML+ Q A D + Sbjct: 3 FFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFEMV 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+ CGNG RC+V F + KS F + G A N Sbjct: 61 YYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATIN-----------DT 109 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW + + + +++D + FV++ G+PH + V DL + D+ + G Sbjct: 110 ADWVSLKMI-DVEHIEKD------------GDDFVLNTGSPHYVKEVV-DLKNLDVFAAG 155 Query: 185 NLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + + + + G+N++ + + +RT+ERGV T ACG+ A +A H Sbjct: 156 RAIRYNATYKQAGINVNFVEAVN-DGYQVRTYERGVEDETLACGTGVTAVALAMAWHHNR 214 Query: 243 --NRAVSVKMLGGGLLIEW-HDNNHVF----MTGEAKKEWEG 277 + +K +GG L I + + N VF + G AK +EG Sbjct: 215 LGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256 >gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] Length = 322 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 101/254 (39%), Gaps = 37/254 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------ 55 F+K G GN ++I G +T++ + L D + LI Sbjct: 29 FSKGHGTGNDFVLIADPGDAHEVTAEQVAQLC-DRHVGIGGDGLIRAVPSRFLPEGRVAL 87 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 QD + F+ N DGS + CGNG+R V FL + ++ T T G+ Sbjct: 88 EQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKVV 147 Query: 110 ENRDGSISVDMGEPILDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNP-FVVSMGNPHA 167 +G +VDMG W+ L P + MD + L + P VSMGNPH Sbjct: 148 RTVNG-YAVDMGP----WEFLFPEEATSKAMDA----LVSAEGLEVPRPGLSVSMGNPHT 198 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGL 221 + + + L P + G N+ + ++ +R ERGVG Sbjct: 199 VVALAE-LSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGE 257 Query: 222 TAACGSAACASVVA 235 T +CG+ ACA+ VA Sbjct: 258 TQSCGTGACAAAVA 271 >gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] Length = 424 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 25/236 (10%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 Q A + F+ N DGS + CGNG R FL + +F T GI + + Sbjct: 204 QAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVRVVPE 263 Query: 114 GSISVDMGEPILDWKL--IPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G +VD+G W+ AR FD M R R H PV L +GNPHA+ Sbjct: 264 G-FAVDLGP----WRYGDEQGARRDGFDIMVRPR-HGKPVPALTF------DLGNPHAVV 311 Query: 170 FVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + D +L + DL + ++ P G+N+ + + +R ERGVG T +CG+ Sbjct: 312 MLPDGIELENLDLTAPPDVQPAQP---NGINVEFVKAVGPAHIAMRVHERGVGETRSCGT 368 Query: 228 AACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A A+ +A+ V + GG L + N V + G A+ +G + + Sbjct: 369 GAAAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424 >gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX] gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX] Length = 274 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + FE T G DG+I+VDM Sbjct: 71 FMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVLEPDGNITVDM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+ +++ + R GPV+ +S+GNPH V + DL Sbjct: 131 G-PV---RILGPGSA-------RLADGPVHGTR------ISVGNPHLACRVARPVAEVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 ++ L A+ F +G N+ + R + L++R +ERG T +CG+ Sbjct: 174 SAPPLLRAEE--FPQGANVEVFREVASGVLEMRVYERGAAETRSCGT 218 >gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2] gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1] gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3] gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08] Length = 274 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 35/291 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDASVD 61 F K G GN +++D HD +T + + L D T Q + D +D + D Sbjct: 5 FWKGHGTGNDFVIVDR---HDPLTPEQVRWLCHRRFGIGADGTL--QALRARDVEDWNGD 59 Query: 62 A---FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DG+ + CGNG+R R+L M T G+ + + DG I Sbjct: 60 PDLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDGDI 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV MG ++ P + + D + V +GNPHA+ + Sbjct: 120 SVTMGTV----RIEPDDVTIEHQDT------------WWSACKVDVGNPHAVVVTDHTTV 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 164 SGINLDDSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAATM 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284 + +V + GG +++ D +TG A G++D+ G Sbjct: 224 AARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274 >gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] Length = 425 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Query: 8 FAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R +A+ + D ++ + + + D I+ Sbjct: 91 FVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVNGA-DYNIK 149 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC RF+ + SFT T G ++ + DG + VDM E Sbjct: 150 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQVKVDMDE 209 Query: 123 PILDWKLIP 131 I IP Sbjct: 210 HIPSGPDIP 218 >gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] Length = 282 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 15/228 (6%) Query: 57 DASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 DA DA F+ N DGS + CGNG+R L + FE IL R Sbjct: 61 DAPPDAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFE----ILTRAGVRT 116 Query: 114 GSISVDMGEPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 I + P DW + + + S I V V MGNPH + F+ Sbjct: 117 VDILEEPASPGGDWSVRVGMGASRSTQRARTVEIAGVRLTATD----VDMGNPHTVVFLP 172 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 +L L A P + G N+ + R + +R ERGVG T +CG+ A Sbjct: 173 PELALEGL-DLTRRPALEPEPARGANVELVRERGPRHVAMRVHERGVGETRSCGTGVAAV 231 Query: 233 VVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 VA+ ++ +V + GG L + W + V +TG A+ +G+ Sbjct: 232 AVAAALRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADGR 279 >gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24] gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24] Length = 314 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/264 (26%), Positives = 104/264 (39%), Gaps = 49/264 (18%) Query: 4 SMVDFAKMEGIGNK-ILVIDMRGC--------------HDNITSDA-INALSTDDNTHFD 47 S + F+K G GN +LV D H I D I A+ + Sbjct: 17 SGLAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGR 76 Query: 48 QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETI 102 ++ +H + F+ N DGS + CGNG+R V FL ++ + + T T Sbjct: 77 ELQAVH----PDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTR 132 Query: 103 RGILVAKENRDGSISVDMGEPILDWKLI----PLARSFDKM-DRDRFHIGPVNHLFLRNP 157 G DG +VDMG W+ I AR+ D + D + R Sbjct: 133 AGAKTVVRTDDG-YAVDMGP----WEFIFPGEATARAMDSLVTADGLEV-------PRPA 180 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLD 211 VSMGNPH + + + L + P + G N+ + + ++ Sbjct: 181 LSVSMGNPHTVVALAE-LSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTIT 239 Query: 212 LRTWERGVGLTAACGSAACASVVA 235 +R ERGVG T +CG+ ACA+ VA Sbjct: 240 MRVHERGVGETQSCGTGACAAAVA 263 >gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] Length = 303 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 27/230 (11%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS 115 Q A+ F+ N DGS + CGNG+R R+L ++ F LV R G Sbjct: 85 QPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLEEAGRF------LVG--TRIGP 136 Query: 116 ISVDMGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VD+ + W P R + D + V VS+GNPH + V D Sbjct: 137 VPVDVPPAGDVTAWLPAPELRGGGRARFDGRMLEGVR---------VSVGNPHLVCVV-D 186 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L D L + F +G N+ + + L +R +ERGVG T +CGS ACA Sbjct: 187 TLADVDFTRAPVLDSDE--FPDGANVEVVEIERPGVLRMRVYERGVGETWSCGSGACAVA 244 Query: 234 VASGCLHKTNRAVS----VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + R + + GG L I + D + V + G A EG+L Sbjct: 245 AVAEGAERIPRPADGWWRIVVPGGELRIRF-DGDRVALAGPAVVVAEGRL 293 >gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] Length = 306 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 36/242 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D F+ N DG VQ CGNG R FL + +R T G L+A + Sbjct: 83 DWFMDYRNADGGAVQMCGNGARVFAHFLRANGLEERDEHVIGTRAGAKRVRLLAFDRGSA 142 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 + V+MG + + + R F + F V +GNPH + Sbjct: 143 EVEVEMGRARVGGRSAASLPAEGTEGRRVF-----------DGFAVDVGNPHLVCLAPAL 191 Query: 173 --DDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 D L DLA + P +F EGVN+ S E LR ERGVG T AC Sbjct: 192 GLDGLAGLDLA-------RQPEYDRDVFPEGVNIEFVVPHSPEKATLRVHERGVGETKAC 244 Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 G+ + A L V+V GG + + + ++G + G+ D+ G Sbjct: 245 GTGSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEFDL--G 302 Query: 285 KW 286 +W Sbjct: 303 QW 304 >gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] Length = 331 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 116/314 (36%), Gaps = 60/314 (19%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINA-------LSTDDNTHFDQIMLIHDFQDAS 59 K G GN ILV D G D + ++A+ + + D + + + D + Sbjct: 11 LTKAHGTGNDFILVPDFAGTLD-LPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVA 69 Query: 60 VDA-----FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 D F+ N DGS Q CGNG+R V +L R++ + R + VA Sbjct: 70 RDFPEAEWFMDYRNADGSIAQMCGNGLRVFVHYL--RIQ-GVIDLKPGRSVTVATRGGVK 126 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++S D +D L R D D R + V R V+M NPH + + D Sbjct: 127 AVSFDGAVYTIDMGEYGLPRG-DAGDDTRVAVPGVGE---RPALSVTMPNPHTVVLL-DS 181 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDL---------------- 212 A P+ EG NL + RV+ +DL Sbjct: 182 AEELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRADQG 241 Query: 213 --------------RTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG-GGLLI 257 R ERGVG T ACG+ CA+ +A L + R V++ GG L Sbjct: 242 LADRSVSPSNPALMRVLERGVGETLACGTGTCAAALAV-LLSRGEREGEVRLRSPGGPLT 300 Query: 258 EWHDNNHVFMTGEA 271 + F+TG A Sbjct: 301 VRIEGGRAFLTGPA 314 >gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] Length = 299 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 44/247 (17%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIR 103 +QIM + Q + F+ N DGS + CGNG R + F + F T Sbjct: 64 EQIMAV---QAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRA 120 Query: 104 GILV------AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRN 156 G+ + K V+MGE WK+ + D + + P N R Sbjct: 121 GVKILTPRGNVKPYGANVFQVEMGE----WKI---------GETDAYEVTIPGNDGSARG 167 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSL 207 F V MGNPH + +ED + +L+ K +P N+ R+ T++ Sbjct: 168 TF-VDMGNPHVVAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAV 226 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNH 264 +R ERG G T +CG+ C A+G + + +S + + GG L ++ D + Sbjct: 227 GEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDED- 281 Query: 265 VFMTGEA 271 V +TG A Sbjct: 282 VKLTGSA 288 >gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] Length = 282 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 53/300 (17%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-----------ALSTDDNTHFDQIM 50 + + V F K+ G GN + ID R H ++ +A+ + D D Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNR--HLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAP 61 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAK 109 H+ D N DGS + CGN RC V + F T GI+ A Sbjct: 62 QGHE-----ADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAV 116 Query: 110 ENRD-GSISVDMGEP-------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + + G V++ P L+ + P F V+ Sbjct: 117 ADVEAGYAKVELTRPRDLAAGTTLELEGTPFTVHF-----------------------VN 153 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV- 219 G PHA+ F D + DL G L HP FS G N + A + ++ LRT+ERGV Sbjct: 154 TGVPHAVVF-SDSVDGLDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVE 212 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ A A+ + L T+ +V V+ GG +L ++ +F++G+A + + G++ Sbjct: 213 DETYACGTGAAATAFIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272 >gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] Length = 261 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 39/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R D D + L D +L+ + D Sbjct: 3 IPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V+F + + F + G+ A + E Sbjct: 61 MVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAF----------IKE 110 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +++ +++ +A D + D F + + G+PH + VE + + + Sbjct: 111 KLVNLQMMNVA-GIDTLADDTFFL--------------NTGSPHYVKKVEK-IEQFPVFE 154 Query: 183 FGNLLAKHPMFSEG-VNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + F+ G N++ + L +RT+ERGV T +CG+ A+ +A+ L Sbjct: 155 TGKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEKLG 213 Query: 241 KTNRAVSVKMLGGGL---LIEWHDNNH--VFMTGEAKKEWEGKLDI 281 + V +K LGG L I+ D ++ VF+ G AK+ + G++++ Sbjct: 214 IAPQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEV 259 >gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] Length = 257 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 51/289 (17%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K +G GN +++D R I ++ + F D +L+ + D +VD Sbjct: 3 FYKYQGTGNDFIIVDNR--LQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG+E CGNG RC+ F L +K ++ F I G+ AK D + + M Sbjct: 59 MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEA-EFIAIDGLHKAKIKND-IVHLQMQ 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + + ++FD +HLFL G+PH + V L +++ Sbjct: 117 D-------VSIVKAFD------------SHLFL------DTGSPHHVELVT-GLKDFEVK 150 Query: 182 SFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + G+ + P G N++ S + +RT+ERGV T +CG+ A +A + Sbjct: 151 ANGSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALA---M 207 Query: 240 HKTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 HK+ + V++ GG L I ++ + +++ G A K ++G+++ Sbjct: 208 HKSGKTKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256 >gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1] Length = 282 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 53/300 (17%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-----------ALSTDDNTHFDQIM 50 + + V F K+ G GN + ID R H ++ +A+ + D D Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNR--HLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAP 61 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAK 109 H+ D N DGS + CGN RC V + F T GI+ A Sbjct: 62 QGHE-----ADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAV 116 Query: 110 ENRD-GSISVDMGEP-------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + + G V++ P L+ + P F V+ Sbjct: 117 ADVEAGYAKVELTRPRDLAAGTTLELEGTPFTVHF-----------------------VN 153 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV- 219 G PHA+ F D + DL G L HP FS G N + A + ++ LRT+ERGV Sbjct: 154 TGVPHAVVF-SDSVDGLDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVE 212 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ A A+ + L T+ +V V+ GG +L ++ +F++G+A + + G++ Sbjct: 213 DETYACGTGAAATAFIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272 >gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria immitis] Length = 106 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRG- 104 DQ+++I D ++ D F+ I N DGS+V+ CGN RC V +LT K + T E + Sbjct: 17 DQVIVITD--SSTADCFMHIYNADGSKVEMCGNAARC-VGYLTMLEKDTEYATIELVNNR 73 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLA 133 IL + D I V+MG+P+L W IPL+ Sbjct: 74 ILECFKVSDKFIKVNMGKPLLKWHEIPLS 102 >gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] Length = 237 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 44/266 (16%) Query: 10 KMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K GN +V D+ G +D S+ + S D D ++ + +D F+ Sbjct: 5 KFTATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR----DGVIFVEK-RDGQF--FMDYF 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG+ CGNG R + +L + +K F T G + K ++G + + M Sbjct: 58 NKDGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNG-VMIKM----- 111 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 P + K+ D F + F++++G PH + FV D++ D+ G Sbjct: 112 -----PASNMPQKLTIDSF-----------SGFLLNVGVPHFVIFV-DNVETIDVNKIGK 154 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN- 243 L + N++ +V +++ +RT+ERGV T ACGS AS +K+N Sbjct: 155 QLREKL----NSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYV---FNKSNL 207 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269 + VK GG L + + N+ +++ G Sbjct: 208 EKIEVKARGGTLFVHFL-NDGIYLEG 232 >gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] Length = 307 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 36/221 (16%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAK----EN 111 D F+ N DGS + CGNG+R ++ + S T+R G+ Sbjct: 72 DWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAGLRAVSIDELSR 131 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 R + V+MG+P +++ LA +F IG N+ V +GNPH + Sbjct: 132 RHAVVGVNMGQP----EVLGLATAF---------IGSGNNALKFAGIGVDVGNPHLACVM 178 Query: 172 ED----DLYHYDLASFGNLL----AKHPMFSEGVNLSIARVTSLE---SLDLRTWERGVG 220 L +L + G++ A MF G+NL I VT L+ S+ +R ERGVG Sbjct: 179 PGLSAAGLAELELEAAGSVAKPVRADEAMFPNGLNLEI--VTPLDASDSVSMRVIERGVG 236 Query: 221 LTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWH 260 T +CG+ A+ +A+ +T AV+VK+ GG + ++ H Sbjct: 237 ETRSCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVH 277 >gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] Length = 250 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 94/224 (41%), Gaps = 32/224 (14%) Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGSE + CGNG R + S + K F T+ G++ A D S Sbjct: 57 QFYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEADVVESQLTKPK 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ILD K+ + + +++ G PH + FVE DL +D Sbjct: 117 ILDRKIEENGKRW---------------------WLIDTGVPHLVTFVE-DLNQFDKNES 154 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L K ++ VN I R LE++ +RT+ERGV T ACG+ A+ + + Sbjct: 155 KRLRNK---YNANVNYGIIR--DLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 N V+V G L ++N +F G KK +E K G W Sbjct: 210 NPTVTVVPKSGEELQLRYENEKLFFKGRVKKVFE---TFKEGIW 250 >gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803] gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803] Length = 262 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 42/285 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63 F K +G GN ++ID R ++ + ++ + F D ++L+ + +D D Sbjct: 5 FYKYQGTGNDFVMIDNR--DKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + + S F I G+ A SI D Sbjct: 63 MVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKA------SIEGD--- 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++ K+ + + D +FL G+PH I F E+ + D+ Sbjct: 114 -VVSLKMQNVESISENED----------FIFL------DTGSPHHILFTEN-VNKVDIKK 155 Query: 183 FGNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G+ + + + G N++ + ++ +RT+ERGV T +CG+ A +A+ Sbjct: 156 EGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAFKS 215 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 KTN V + GG L + + + V+++G A+ ++G++ Sbjct: 216 SKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260 >gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] Length = 284 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 68/310 (21%) Query: 8 FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA---- 62 F K G GN +V+ D G D SDA A+ D + L+ + A++D Sbjct: 6 FTKGHGTGNDFVVLADPDGELD--LSDAQIAVLCDRHFGIGADGLLRVVRSAAIDEGAEA 63 Query: 63 -------FIRIINCDGSEVQSCGNGMRCVVRFLT--------------SRMKRKSFTFET 101 F+ N DGS+ + CGNG R R+L+ +R K+ T + Sbjct: 64 AASGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLT-RS 122 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 RG E G+ +++ + ++ K +P+AR +D Sbjct: 123 ERGY----EVDLGAFAIEATDTLVRAKGLPVARPGVGID--------------------- 157 Query: 162 MGNPHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTW 215 +GNPH + V D L DL ++ +L P V + ++ ++ LR + Sbjct: 158 VGNPHVVVAVASDAELEALDL-TYQPVLDPAPRHGANVEFVVPADPLVQEGVGAIRLRVF 216 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEA 271 ERGVG T +CG+ A+ +A H A +V GG L + D HVF++G A Sbjct: 217 ERGVGETLSCGTGVAAAALA--VRHWAGSAAPDVWTVDTPGGTLGVRVAD-GHVFLSGPA 273 Query: 272 KKEWEGKLDI 281 + G++ + Sbjct: 274 SLVFTGEVTL 283 >gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208] Length = 168 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%) Query: 160 VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 VS+ NPH I FV+ + D LAS+ N +++P F +GVN+S + + +++ +RT+ Sbjct: 5 VSVPNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLNDDAIYVRTF 62 Query: 216 ERGVGLTAACGSAACA 231 ERGVG T ACG+A A Sbjct: 63 ERGVGFTNACGTAMSA 78 >gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818] Length = 462 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 7/133 (5%) Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLR 213 R ++V MGNPHA+ ++ + D+ G+ L + F + VN+ +V + + LR Sbjct: 331 RPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHVRLR 390 Query: 214 TWERGVGLTAACGSAACASVVASGCLHK---TNRAVSVKMLGGGLLIEW--HDNNHVFMT 268 +ERG G T ACG+ A + VA+ LH + ++V M GG L + W H + + MT Sbjct: 391 IFERGAGETLACGTGA-CAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLTMT 449 Query: 269 GEAKKEWEGKLDI 281 G A + G + + Sbjct: 450 GPATCCFAGAITL 462 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/24 (62%), Positives = 16/24 (66%) Query: 65 RIINCDGSEVQSCGNGMRCVVRFL 88 RI N DG EV CGNG RCV F+ Sbjct: 146 RIFNADGGEVFQCGNGARCVAAFV 169 >gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] Length = 236 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 38/216 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS CGNG R ++L R +K K FTF + R G I V + Sbjct: 50 FMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLS----------RAGEIKVIV 99 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178 + I W +P +M D + + V +G PH + V+ D+L Sbjct: 100 DDSI--WVRMPGVSEKKEMKVDDYE-----------GYFVVVGVPHFVMEVKGIDEL--- 143 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASG 237 D+ G L + G N+ V + L +RT+ERGV T ACG+ SV A Sbjct: 144 DVEKLGRDL----RYKTGANVDFYEVLP-DRLKVRTYERGVERETKACGTGV-TSVFAVY 197 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 + V +++ GG L ++ +N +F+ G+ K+ Sbjct: 198 RDKTGAKEVKIQVPGGTLFLK-EENGEIFLRGDVKR 232 >gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] Length = 184 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 6/76 (7%) Query: 160 VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 VS+ NPH I FV+ + D LAS+ N +++P F +GVN+S + +++ +RT+ Sbjct: 21 VSVPNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLRDDAIYVRTF 78 Query: 216 ERGVGLTAACGSAACA 231 ERGVG T ACG+A A Sbjct: 79 ERGVGFTNACGTAMSA 94 >gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] Length = 314 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 39/251 (15%) Query: 53 HDFQDASVDA-FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---- 105 HD Q A+ + F+ N DGS + CGNG+R L ++ + + F +T G+ Sbjct: 77 HDAQGANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHIT 136 Query: 106 --LVAKENRDGSIS--VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + E+ +GS V++G + + R D F V Sbjct: 137 IHSLTGEDPNGSTHAVVEVGMGPVGVTGVSTGRMGD---------------FEFAGLGVD 181 Query: 162 MGNPHAIFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLD------LR 213 +GNPH + V L LA +F H F EGVN+ I VT E+ D +R Sbjct: 182 VGNPH-LAAVIPGLTPVQLAELAFEQPAFDHEFFPEGVNVEI--VTDPETADGDMRVGMR 238 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 WERGVG T +CG+ A+ A+ N ++V + GG L I +D MTG + Sbjct: 239 VWERGVGETRSCGTGTVAAARAALADAGVENGTITVDVPGGTLTIAIND-GEATMTGPSV 297 Query: 273 KEWEGKLDIKT 283 G++ +K+ Sbjct: 298 IVARGEVSLKS 308 >gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 268 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 71/308 (23%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM----------LIH 53 +++ F K +G GN ++ID R +N +D ++ LI Sbjct: 2 TVIHFYKYQGAGNDFIMIDNR----------MNTFPKEDTKLIARLCERRFGVGADGLII 51 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111 D+ D + N DG+ CGNG RC+V F + + TF G Sbjct: 52 LENDSKTDFSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDG------- 104 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFF 170 L ++F K D + V+ + ++ ++ G+PH + Sbjct: 105 --------------------LHKAFFKNDLIHLQMQDVSDIEKVKKGLFLNTGSPHYVEI 144 Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 V+D L D+ G + P EGVN++ + +RT+ERGV T +CG+ Sbjct: 145 VKD-LDSMDVKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTG 203 Query: 229 ACASVVASGCLHKTNRA----VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKK 273 A A+ +A +HKT + + ++ GG L + + + +V++ GEA+ Sbjct: 204 ATATAIA---MHKTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEF 260 Query: 274 EWEGKLDI 281 +EG + I Sbjct: 261 VFEGTISI 268 >gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 279 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 34/276 (12%) Query: 9 AKMEGIGNKILVID-MRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM+G GN L++D M+ I+ AL+T +T D I+ + Q ++I Sbjct: 6 TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 + DG+E CGNG+RC R+ R S F I G DG V + ++ Sbjct: 61 FDRDGTEETMCGNGLRCATRYFRDTYVR-SNVFNIITG--------DGLKEVFVDNDCVE 111 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 L AR + ++D++ ++++ P VV +G+ I L + +L Sbjct: 112 VNL-GAARDYRQIDQN------CHYVYTGVPHVVVIGS--EISLETARAQGQSLRNDKSL 162 Query: 187 --LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L HP EGVN++ T+ + LRT+E GV +T +CG+ + AS + + + Sbjct: 163 CELVGHP---EGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAKVFGID 219 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + LGG L I +D + ++G + ++GK+ Sbjct: 220 LPILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252 >gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] Length = 263 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 42/287 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K + GN ++I+ ++ I L + D ++LI ++ D +++ Sbjct: 5 FFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIKNY--DFYMKY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG E CGNG RC V F + +K+ F+TI G A N++ +S++M Sbjct: 63 YNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINKN-IVSINM---- 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + + ++D D +FL + G+PH I F++ + Sbjct: 118 TNVEFLTV-----EVDSDS--------IFL------NTGSPHHIIFIKKIENINRNINIK 158 Query: 185 --NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L + GVN++ ++ +RT+ERGV T +CG+ ASV+A+ HK Sbjct: 159 GRKLQSSKKYLKTGVNVNFVQINK-HIFYVRTYERGVENETLSCGTGVTASVIAA--YHK 215 Query: 242 TNRAVS---VKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 VK GG L +++ +F+ GE ++G + I Sbjct: 216 KKIFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262 >gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] Length = 304 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/287 (26%), Positives = 117/287 (40%), Gaps = 48/287 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 + E +++ +D R H I D + L+ ++ I + ++ + F+ N Sbjct: 33 GRFEPTADEVRHLDDR--HFGIGGDGVIRLAHPEDVSDLTAEQIAECREDGAEWFMDYRN 90 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS--------V 118 DGS Q CGNG R + F R K +F T G+ V GS+ V Sbjct: 91 ADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL--GSVEGLGRNVFRV 148 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG WK + + D F + P R + V MGNPH + +ED Sbjct: 149 DMGA----WK---------RGEVDAFEVTIPGTAGSARGTY-VDMGNPHVVAVIEDGKAT 194 Query: 178 YDLASFGNLLAK---HPMFSEGVNLSIARVTS------LESLDLRTWERGVGLTAACGSA 228 +L+ K P+ N+ R+ + L + +R ERG G T +CG+ Sbjct: 195 LPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNERGCGETLSCGTG 254 Query: 229 ACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 CA+ V +G H T + + GG L I+ D + V +TG+A Sbjct: 255 LCATAVTLRAKTGIDHWT-----IAVRGGVLRIDVSDTD-VKLTGDA 295 >gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis] gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 307 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 34/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH-DFQDASV 60 +F +GN +V+D RG A+ L + HF D ++ +A Sbjct: 30 AEFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLC---DRHFGVGADGVLFGPLGAPEAGE 86 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK--ENRD 113 +R+ N DG+E + GNG+R L + F T G + + + Sbjct: 87 PVRLRMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEFPLRTAAGDVPVRILDLAS 146 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G++ V MG P S D R R + V++ GNPHA+ + + Sbjct: 147 GTVQVGMGRPEFGAT----GESLDVGGR-RLAVTSVHN-----------GNPHAVVPLAE 190 Query: 174 DLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 LA G L+A H F N+ + ++ + +ERG G T A GS+ACA+ Sbjct: 191 --ISAGLARELGPLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAA 248 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A+ L T V V+M GG + + + V MTG A++ G+ Sbjct: 249 AAAAHALGLTGPDVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRF 295 >gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] Length = 332 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 16/174 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG---ILVAKENRDGSISVDMGEPI 124 N DGS + CGNG+RCV R + R + + T G + + G SV + P Sbjct: 67 NPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGVWSVAVELPP 126 Query: 125 LDWKL--IPLARS-FDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDL 180 + ++ +P+ + + +D + P H LR F V++ N H + V DD +L Sbjct: 127 VTFRAADVPVVTTGAEHVD----TVIPTLHPALR--FTGVAVPNSHLVAVV-DDYDENEL 179 Query: 181 ASFGNLLAKHPM-FSEGVNLSIAR-VTSLESLDLRTWERGVGLTAACGSAACAS 232 + G A P+ G N+S R +T+ + +RT+ERG GLT +CGS AS Sbjct: 180 VAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233 >gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100] gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100] Length = 285 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 75/290 (25%), Positives = 112/290 (38%), Gaps = 49/290 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----------------NITSDAINALSTDDNTHFDQI 49 + KM G GN +ID R + D + LSTD Sbjct: 7 LSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDG------F 60 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGIL 106 +LI D + D N DGS + CGN RC RF ++ K F+T G++ Sbjct: 61 LLIEDGSEG-FDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLV 119 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 VA+ + I V M E +LI L ++F + V+ G PH Sbjct: 120 VAQILGNSRIRVKMPEARFIQELIELKTK--SSSTEKFAL-------------VNTGVPH 164 Query: 167 ---AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLT 222 I D + D+A + H + G N++ S + T+ERGV T Sbjct: 165 LVQKIHAFSDTVALKDMAR--EARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYT 222 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEA 271 ACG+ A A+ K + +V V+M GG + + + + H M G+A Sbjct: 223 LACGTGAVAAAFVHNKETKES-SVEVQMPGGSMQVTFVSGDPHPLMEGDA 271 >gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 285 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 15/222 (6%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISV 118 + + N DGS GNG+R R+L +S +FE + I V + V Sbjct: 58 LEVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLV 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVED-DL 175 +G LD +P+ MD + + H+ R + V +GNPH + + D Sbjct: 118 SLGSFCLDSSKVPVM-----MDAKKTVLNETLHIAGREISISCVDIGNPHCVVLGQAADR 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L+++H +F + N+ + S +++ TWERG G T A GS+ACA+ Sbjct: 173 ATAEL--LGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAV 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L + V+V M GG + + ++ + + G + G Sbjct: 231 CHTLGLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG 272 >gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] Length = 281 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 109/281 (38%), Gaps = 27/281 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G N +++ R ++T + + AL D +I DA F+ Sbjct: 16 FLKGHGTENDFVLLPDRADELDLTENRVRAL-CDRRAGLGGDGVIRVVPDADGGFFMDYR 74 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS Q CGNG R R++ F T G VA G +S++MG L Sbjct: 75 NADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPATL 134 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LYHYDLAS 182 R IG + V +GNPH + D L DL+ Sbjct: 135 GVA-------------SRAAIGDAAFAGI----AVDVGNPHLVCLDIGDRSTLAALDLSH 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-K 241 + +F +GVN+ + +R ERGVG T +CG+ A A+ + Sbjct: 178 APEFDPQ--VFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGR 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T V V + GG + ++ + +TG A +G+++ + Sbjct: 236 TQGRVLVNVPGGQVTVDIAPGTSM-LTGPAVIVAQGRVEPQ 275 >gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 271 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 21/168 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L ++ F T G + DG I++DM Sbjct: 71 FMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQVEADGGITIDM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G ++ S K+ R H +S+GNPH V + DL Sbjct: 131 G------RVEMQGTSSAKLARQVVH-----------GEQISVGNPHLACEVTVPVAEVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L + F G N+ + R + L++R +ERG G T +CG+ Sbjct: 174 GELPVLDVE--AFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTG 219 >gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8] gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8] Length = 236 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 40/217 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS CGNG R ++L R +K K FTF + R G I V + Sbjct: 50 FMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLS----------RAGEIKVIV 99 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178 + I W +P +M D + + V +G PH + V+ D+L Sbjct: 100 DDSI--WVRMPGVSEKKEMKVDGYE-----------GYFVVVGVPHFVMEVKGIDEL--- 143 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASG 237 D+ G L + G N+ V + L +RT+ERGV T ACG+ + V Sbjct: 144 DVEKLGRDLR----YKTGANVDFYEVLP-DRLKVRTYERGVERETKACGTGVTSVFVVY- 197 Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 KT + V +++ GG L ++ +N +F+ G+ K+ Sbjct: 198 -RDKTGAKEVKIQVPGGTLFLK-EENGEIFLRGDVKR 232 >gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] Length = 238 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 48/272 (17%) Query: 23 MRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDA------FIRIINCDGSEV 74 MRG + T + + + + + ++ +L+ + D A F+ NCDG+ Sbjct: 2 MRGAYYTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGRDGAIFVERDFMDYYNCDGNRA 61 Query: 75 QSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 CGNG R V F+ + KR F + G ++ K D +SV M P Sbjct: 62 AFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKV--DDLVSVRMPSP-------RFLG 112 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 +F++ D + G +V +G PH + +E D D + LL ++ Sbjct: 113 TFEEED----YSGE----------IVVVGVPHLV--IEGDT---DKVDWNALLPLRHLYD 153 Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV----VASGCLHKTNRAVSVK 249 N+++ V SL +RT+ERGV G T ACGS A + V +GC V ++ Sbjct: 154 --ANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGC-----EKVILQ 206 Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 GG L + + D + G K E +L + Sbjct: 207 ANGGDLTVSFRDGSAYLGGGVEKCSEELELQL 238 >gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R] gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R] Length = 277 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 39/191 (20%) Query: 54 DFQDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--- 105 D + ++VD F+ N DGS + CGNG+R +L SR + SF T G+ Sbjct: 57 DVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHV 116 Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++ + + VDMG IP D +N V MGN Sbjct: 117 DILQADQHSAQVRVDMG--------IPDVTGLSTCD--------INGQVFAG-LGVDMGN 159 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLE--SLDLRTWER 217 PH V ++ ++ + P F + GVN+ I VT LE ++ +R WER Sbjct: 160 PHLACVVP----GLSASALADMELRAPTFDQEFFPHGVNVEI--VTELEDDAVSMRVWER 213 Query: 218 GVGLTAACGSA 228 GVG T +CG+ Sbjct: 214 GVGETRSCGTG 224 >gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] Length = 313 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 52/265 (19%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---------------TDDNTH 45 + ++ + FAK G N +++D R ++T + + AL+ Sbjct: 6 VPTTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALA 65 Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFE 100 + +L H+ + F+ N DGS Q CGNG+R +L + + Sbjct: 66 EGRAVLAHE---PAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLG 122 Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-------IGPVNHLF 153 T G ++ G +VDMG W D RD F + P Sbjct: 123 TRAGARRVRKEDSGWYAVDMGV----WSF----PGGDAAVRDGFDAEVTVSGLEPAGTQV 174 Query: 154 LRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNL----SIARVTSL 207 R V +GNPH + + DDL DL + ++L P+ +EG N+ + TS+ Sbjct: 175 PRPALSVDLGNPHTVVALASLDDLDRADLHTAPDVL---PLPAEGTNVELVVPLGEETSV 231 Query: 208 ES-----LDLRTWERGVGLTAACGS 227 + + +R ERGVG T +CG+ Sbjct: 232 DGTVVGRVRMRVHERGVGETRSCGT 256 >gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum] gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032] Length = 277 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 39/191 (20%) Query: 54 DFQDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--- 105 D + ++VD F+ N DGS + CGNG+R +L SR + SF T G+ Sbjct: 57 DVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHV 116 Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++ + + VDMG IP D +N V MGN Sbjct: 117 DILQADQHSAQVRVDMG--------IPDVTGLSTCD--------INGQVFAG-LGVDMGN 159 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLE--SLDLRTWER 217 PH V ++ ++ + P F + GVN+ I VT LE ++ +R WER Sbjct: 160 PHLACVVP----GLSASALADMELRAPTFDQEFFPHGVNVEI--VTELEDDAVSMRVWER 213 Query: 218 GVGLTAACGSA 228 GVG T +CG+ Sbjct: 214 GVGETRSCGTG 224 >gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] Length = 277 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 122/288 (42%), Gaps = 39/288 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G GN +V+D +NI D A + D +++I + A+ Sbjct: 1 MNFWKMNGNGNDFIVVDATAA-ENIGLDWPAVARALCPRRQSIGADGLLVIERSKTANF- 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVD 119 F+RI N DGSE + CGNG RC RF + +S FET+ G++ A+ DG + ++ Sbjct: 59 -FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARV--DGRYVEIN 115 Query: 120 MG--EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P +W DR G R F + +G PH + F +++ Sbjct: 116 MGRVRPEPEWS-----------DRTMTLEGET----FRATFAL-VGVPHLVLFSREEVGV 159 Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +G L F +G N++ A + + T+ERGV LT +CG+ A +A Sbjct: 160 DFARRWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALA 219 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + + V GG N V +T E+E L T Sbjct: 220 ARLNGLSGPVTEVHNPGG--------TNRVSLTEMGDGEYEALLGGTT 259 >gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 299 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 38/252 (15%) Query: 44 THFDQIMLIHDFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMK 93 TH + ++D Q A + D F+ N DGS + CGNG R + F + + Sbjct: 53 THPQAVSDLNDKQIAVCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPG 112 Query: 94 RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152 + F T G+ V D +G+ + ++ S+ + D D + + P Sbjct: 113 GEPFRLGTRAGVKVLTSLGDVPT---LGKDVFQVEM----GSWKRGDLDGYEVTIPGTAG 165 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLES 209 R F V MGNPH + +ED +L+ K P N+ R+ Sbjct: 166 SARGTF-VDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSE 224 Query: 210 LD------LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEW 259 D +R ERG G T +CG+ CA+ + +G H T + + GG L ++ Sbjct: 225 GDNEGNATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDV 279 Query: 260 HDNNHVFMTGEA 271 DN+ V +TG A Sbjct: 280 TDND-VKLTGSA 290 >gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3] gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3] Length = 260 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 22/219 (10%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N +GS CGNG+RCV+ ++ K+ ET GI + + VDM Sbjct: 56 DAKLIIFNDNGSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYD 179 P + L+ + + ++ F I + G PH + FVED D Sbjct: 116 TLPDWHYTRHLLSHTLPGVPKEVFSI--------------NTGVPHLVVFVEDVSCVPVD 161 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVA 235 L +G+ L H F +G N++ + S +RT+ERG+ L G+ A A VVA Sbjct: 162 L--WGSFLRYHEDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAALVVA 219 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +N + ++ L+ D++ V++ G KE Sbjct: 220 RR-YGLSNTQIRIRTWSDVLMKISLDSDRVYLEGHVDKE 257 >gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] Length = 267 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 38/285 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F K +G GN ++ID R T + + D +ML+ D Sbjct: 2 IIKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG E CGNG RC+V + R +T R L A G I++ Sbjct: 60 MRYFNSDGREASLCGNGSRCIVAY----AHRLGLFLQTTR-FLAADGEHQGEITLQGVRV 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ D R + P + F + G+PH + V D + D+ + Sbjct: 115 KMN-------------DVSRITVTP-------DYFFLDTGSPHYVKVVA-DAFQTDVVTA 153 Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL-H 240 G ++ P F G N++ T + + T+ERGV T ACG+ A+ +++ L H Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPTP-ACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212 Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLD 280 + +++ GG L + + +NH +++ G A+ + G+++ Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIE 257 >gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] Length = 299 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115 F+ N DGS + CGNG R + F L R + F T G IL + +G Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEG- 135 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +G+ + ++ S+ + D D + + P R F V MGNPH + +ED Sbjct: 136 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 186 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225 +L+AK P N+ R+ D +R ERG G T +C Sbjct: 187 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 246 Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G+ CA+ + +G H T + + GG L ++ D++ V +TG A Sbjct: 247 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 290 >gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5] Length = 268 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 47/228 (20%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHF----DQIMLIHDFQDA 58 +V F K EG GN ++ID R + ++DA I AL + HF D +M + + Sbjct: 2 LVSFVKYEGAGNDFILIDDR--EELFSADARLIAALC---DRHFGIGADGLMTLR--RSV 54 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK----ENRD 113 +D +R N DGS + CGNG RC F + ++ F+ G+ A+ +NR Sbjct: 55 EMDCSMRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRT 114 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G I + M ++ I + + + ++ G PH + F E Sbjct: 115 GEIELGM----INVSEIRSGKGW---------------------WFLNTGVPHYVEFTE- 148 Query: 174 DLYHYDLASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGV 219 +L D+ G ++ +H F +G N++ A + + +RT+ERGV Sbjct: 149 ELDGVDVKGLGRMI-RHDTARFPQGTNVNFAEIAGEGEIRMRTYERGV 195 >gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1] gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1] Length = 282 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115 F+ N DGS + CGNG R + F L R + F T G IL + +G Sbjct: 60 FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEG- 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +G+ + ++ S+ + D D + + P R F V MGNPH + +ED Sbjct: 119 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 169 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225 +L+AK P N+ R+ D +R ERG G T +C Sbjct: 170 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 229 Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G+ CA+ + +G H T + + GG L ++ D++ V +TG A Sbjct: 230 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 273 >gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 297 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 49/251 (19%) Query: 51 LIHDFQDASVDA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTF 99 + D D V A F+ N DGS + CGNG R + F + F Sbjct: 57 FVSDLSDDQVSAVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRL 116 Query: 100 ETIRG--ILVAKENRD----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152 T G IL + N ++MGE WK+ + D + + P Sbjct: 117 GTRAGVKILTPRSNTKPYGANVFQIEMGE----WKV---------GETDAYEVTIPGTEG 163 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV----- 204 R F V MGNPH + +ED + +L+ K P+ N+ R+ Sbjct: 164 SARGTF-VDMGNPHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQ 222 Query: 205 -TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWH 260 T + +R ERG G T +CG+ C A+G + + +S + + GG L ++ Sbjct: 223 NTGVGEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVT 278 Query: 261 DNNHVFMTGEA 271 D++ V +TG A Sbjct: 279 DSD-VKLTGAA 288 >gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429] gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429] Length = 232 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 34/211 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+ N DGS+ CGNG R + +L K F T GI+ K + I + M Sbjct: 53 FMEYYNKDGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKILNE-KILIKMPN 111 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ +AR K++ + F + +++++G PH + FV DD+ H D+ + Sbjct: 112 PL-------VAR---KINVENF-----------SGYLLTVGVPHFVTFV-DDIEHIDVKN 149 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + N++ S + +RT+ERGV T +CGS AS + L++ Sbjct: 150 IGKKIRNKL----DANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV---LNE 202 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + V + GG+L + N+ ++ G+ + Sbjct: 203 SKVKVHTR---GGILHIYTLNDGFYLEGDVE 230 >gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 49/251 (19%) Query: 51 LIHDFQDASVDA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTF 99 + D D V A F+ N DGS + CGNG R + F + F Sbjct: 39 FVSDLSDDQVSAVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRL 98 Query: 100 ETIRG--ILVAKENRD----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152 T G IL + N ++MGE WK+ + D + + P Sbjct: 99 GTRAGVKILTPRSNTKPYGANVFQIEMGE----WKV---------GETDAYEVTIPGTEG 145 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV----- 204 R F V MGNPH + +ED + +L+ K P+ N+ R+ Sbjct: 146 SARGTF-VDMGNPHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQ 204 Query: 205 -TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWH 260 T + +R ERG G T +CG+ C A+G + + +S + + GG L ++ Sbjct: 205 NTGVGEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVT 260 Query: 261 DNNHVFMTGEA 271 D++ V +TG A Sbjct: 261 DSD-VKLTGAA 270 >gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] Length = 299 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115 F+ N DGS + CGNG R + F L R + F T G IL + +G Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRGGVKILTSLGEVEG- 135 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +G+ + ++ S+ + D D + + P R F V MGNPH + +ED Sbjct: 136 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 186 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225 +L+AK P N+ R+ D +R ERG G T +C Sbjct: 187 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 246 Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 G+ CA+ + +G H T + + GG L ++ D++ V +TG A Sbjct: 247 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 290 >gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] Length = 272 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 91/228 (39%), Gaps = 31/228 (13%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L S F T G + DGS++V M Sbjct: 59 FMDYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G L + + +G V + V +GNPH + + DL Sbjct: 119 GPVRLTGESTAV-------------LGGVEFAGVG----VDVGNPHLACVTDVPVAGLDL 161 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTS------LESLDLRTWERGVGLTAACGSAACASVV 234 + A +F GVN+ V + L +R ERGVG T +CG+ A+V Sbjct: 162 RDAPSHDAA--LFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVA 219 Query: 235 ASGCLHKTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L T RA ++ GG + D +TG A G+LD Sbjct: 220 S--WLRGTGRATGAADVLVPGGRVRVTVDEGGSTLTGPAVLLARGELD 265 >gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 30/214 (14%) Query: 65 RIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGSE CGNG R C T + K F T G+ +A E + + ++ P Sbjct: 57 QFYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAGV-IASEVIECVVETELTTP 115 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + L+ SF++ G H G PH + FVE D+A F Sbjct: 116 KV------LSESFEEN-------GLTWHF-------CDTGVPHLVTFVE------DVALF 149 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +A+ + N++ A + +L +RT+ERGV T ACG+ A ++ + Sbjct: 150 DKTIARQMRYKYNANVNYAMLKE-NTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRV 208 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + V G L ++ +F GE +K +E Sbjct: 209 GESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFE 242 >gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] Length = 292 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 40/239 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSIS 117 F+ N DG+ + CGNG+R +L + T G+ + N G Sbjct: 73 FMDYRNADGTAAEMCGNGIRVFAHYLAENGFVDFEPGDTLPVGTRSGVRDVQRNMAG-YQ 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175 DMG LD PL R+ ++D R +G +++GNPH + + D +L Sbjct: 132 ADMGRWSLDGGE-PLVRA-KELDVARPGLG------------INVGNPHVVVALADESEL 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAACGSAA 229 H DL + P+ G N+ + S+ +R ERG G T +CG+ A Sbjct: 178 DHVDL---NYIPVIDPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHERGSGETLSCGTGA 234 Query: 230 CASVVA----SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281 A+ +A +G V+V GG +++ D HV ++G A+ + G L++ Sbjct: 235 VAAALAIRHYAGAGAPNQWRVAVP--GGTVVVRMFPTEDGEHVSLSGPAELVYTGSLEL 291 >gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] Length = 299 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 37/200 (18%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL----- 106 D + F+ N DGS + CGNG R + F + S + F T G+ Sbjct: 71 DGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKTLRPL 130 Query: 107 --VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMG 163 VA RD VDMG W+ + D D F + P R F V MG Sbjct: 131 GDVAPYGRD-VFRVDMGS----WR---------RGDLDAFTVTIPGTPGAARGTF-VDMG 175 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRT 214 NPH + +ED + +L+ K P+ N RV +++ +R Sbjct: 176 NPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMRV 235 Query: 215 WERGVGLTAACGSAACASVV 234 ERG G T +CG+ CA+ + Sbjct: 236 NERGCGETLSCGTGLCATAI 255 >gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A] Length = 280 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 60 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 120 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 165 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 166 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 225 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 226 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 271 >gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8] gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] Length = 297 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 242 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 243 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288 >gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] Length = 297 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENRD---- 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 242 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 243 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288 >gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] Length = 263 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 63/298 (21%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIHD 54 + F K +G GN ++ID R N +S +D +++ +++ + Sbjct: 3 LQFFKYQGTGNDFVMIDNRN----------NVVSKNDTKLINRLCDRKFGIGADGLILLE 52 Query: 55 FQDASVDAFIRI-INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR 112 D D F + N DG++ CGNG RC+V F + F I G A ++ Sbjct: 53 HPDVEGDDFKMVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDK 112 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D +++ M + D + G + L G+PH I F E Sbjct: 113 DNVVNLQM-----------------QNVSDIYQSGNIAFL--------DTGSPHHIVFTE 147 Query: 173 DDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSAA 229 D+ + D+ G + + E G N++ T E + +RT+ERGV T ACG+ Sbjct: 148 -DVKNLDVKEEGAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGV 206 Query: 230 CASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 A +A+ H +NR V +++ GG L + + + + V++ G A ++G++ Sbjct: 207 TAVAIAA---HHSNRTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261 >gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] Length = 280 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 60 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 120 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 165 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 166 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 225 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 226 SCGTGLC----ATGIVLQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 271 >gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68] gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68] Length = 297 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 242 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 243 SCGTGLC----ATGIVLQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288 >gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 292 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 42/243 (17%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKE 110 +D + F+ N DGS + CGNG+R FL ++ T G+ + Sbjct: 66 EDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGVRDVQR 125 Query: 111 NRDGSISVDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + G VD+G W+L PL R+ D R + +GNPH Sbjct: 126 SGSG-FQVDLGR----WELAGGEPLVRAKDLQ-------------VARPGLGIDVGNPHV 167 Query: 168 IFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR----VTSLESLDLRTWERGVGL 221 + + ED+L DLA F L P V L + V + + +R ERG G Sbjct: 168 VVALSSEDELAEADLA-FVPQLDPEPAAGANVELVVPADPLVVDGVGHITMRVHERGSGE 226 Query: 222 TAACGSAACASVVASGCLHKTNRAVS----VKMLGGGL---LIEWHDNNHVFMTGEAKKE 274 T +CG+ A A+ +A+ H A V++ GG L + D HV ++G A+ Sbjct: 227 TLSCGTGAAAAALAT--RHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELV 284 Query: 275 WEG 277 ++G Sbjct: 285 FDG 287 >gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92] gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92] Length = 249 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 31/217 (14%) Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP-IL 125 N DGS CGNG R ++ + +++ F T GI+ ++DG + V++ P IL Sbjct: 61 NSDGSHADMCGNGSRAAAQYAVDNQLCTNVFDLVTGSGIVSVNVSKDG-VEVELTSPKIL 119 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 K I D F G + H + G PH + FV DL +D+ + + Sbjct: 120 SNKPI-----------DEF--GKIWHFY-------DTGVPHLVSFVS-DLNEFDIQTCRD 158 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 L K+ N+++A++ + ++ +RT+ERGV T ACG+ A + +R Sbjct: 159 LRYKY-----NANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASR 212 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V G L +N +F G+ K ++ +D+ Sbjct: 213 CCKVYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249 >gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] Length = 259 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 120/289 (41%), Gaps = 51/289 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61 + F+K +G GN ++ID R D D ++ + F D +ML+ S D Sbjct: 3 ISFSKYQGTGNDFVIIDNR--LDIFPKDDTKLVAQLCDRKFGIGADGLMLLE--SHPSAD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + + TFE + G+ A +DG + + M Sbjct: 59 FRMVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATV-KDGIVHLKM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + K P + FL G+PH I V D+ + Sbjct: 118 -QDVAEIKTTP------------------EYSFL------DTGSPHHIKMVS-DVKTVAV 151 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-- 236 G + ++ E G N++ + +RT+ERGV T +CG+ A +A+ Sbjct: 152 KEEGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHN 211 Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEA----KKEWE 276 G K N + V+ GG L + + V++ G A K EW+ Sbjct: 212 NGVTSKNNIQLDVE--GGKLAVSFTKTATGYTDVYLIGPATFVFKGEWQ 258 >gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.] Length = 256 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 54/291 (18%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62 +F K +G GN +++D R + + + +S N +F D ++LI + D D Sbjct: 4 NFYKYQGTGNDFIMVDNRA--EIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + N DGS+ CGNG RC V R+L + +F I V DG + Sbjct: 60 KMIYFNADGSQT-FCGNGGRCAVAFARYLNIIKNKTNF-------IAV-----DGPHFAE 106 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + I+ K+I D D I N G H + V D L +Y Sbjct: 107 IKNNIVSLKMI---------DVDDIRI-------QENSVFAYTGTQHHVEMV-DSLDNYP 149 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + + + G N++ + + +RT+E+GV G T ACG+ A +A Sbjct: 150 VYEKGKQI-RASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIA--- 205 Query: 239 LHKTNRAVS----VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +HKT + S + + GG L + + + N V++ G A ++G++ I Sbjct: 206 MHKTKKTTSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256 >gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 286 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 15/211 (7%) Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123 N DGS + GNG+R ++L +++K FT + G + N +G+ + MG Sbjct: 64 NPDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRA 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDL 180 +P+ + R I +F R P+ V S+GNPH + + D++ + Sbjct: 124 SFWSSDVPV-------EGPRREIINETMVFGRIPYPVTCLSVGNPHCVILM-DEISKDLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E +N I +V + +ERG G T A GS CA+ A+ L Sbjct: 176 CRIGKYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 T+ + V+M GG L IE ++ V MTG+ Sbjct: 236 LTDPKMVVQMPGGTLEIEIDEDGVVHMTGDV 266 >gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] Length = 297 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113 F+ N DGS + CGNG R + F + F T G IL + N Sbjct: 77 FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172 V+MGE WK+ + D + + P R F V MGNPH + +E Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGAEGSARGTF-VDMGNPHVVAVIE 182 Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223 D + +L+ K P+ N+ RV T + +R ERG G T Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 242 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ C A+G + + +S + + GG L ++ D++ V +TG A Sbjct: 243 SCGTGLC----ATGVVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288 >gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010] gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010] Length = 299 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 37/200 (18%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL----- 106 D + F+ N DGS + CGNG R + F + S + F T G+ Sbjct: 71 DGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKTLRPL 130 Query: 107 --VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMG 163 VA RD VDMG W+ + D D F + P R F V MG Sbjct: 131 GDVAPYGRD-VFRVDMGS----WR---------RGDLDAFTVTIPGTPGAARGTF-VDMG 175 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRT 214 NPH + +ED + +L+ K P+ N RV +++ +R Sbjct: 176 NPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMRV 235 Query: 215 WERGVGLTAACGSAACASVV 234 ERG G T +CG+ CA+ + Sbjct: 236 NERGCGETLSCGTGLCATAI 255 >gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] Length = 237 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 36/215 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS CGNG R ++L R +K++ FTF + R G I V + Sbjct: 51 FMDYYNRDGSMATFCGNGARAFSQYLIDRGWVKQRKFTFLS----------RAGEIKVFL 100 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + I W +P +++ D + R FVV +G PH I V+ ++ D+ Sbjct: 101 DDGI--WVRMPAVSEVKELEVDGY----------RGHFVV-VGVPHFILEVK-NVDEVDV 146 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGCL 239 G LL +H N+ V L +RT+ERGV T ACG+ A Sbjct: 147 EKLGRLL-RHKT---NANVDFYEVAQ-GFLKVRTYERGVERETKACGTGVTAVFFVH--- 198 Query: 240 HKTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKK 273 H + +K+L GG L +N +++ G+ ++ Sbjct: 199 HSRTGSKEMKVLVPGGTLFLREENGEIYLKGDVRR 233 >gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1] gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1] Length = 263 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 51/295 (17%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57 +S + F K +G GN ++ID R +N + + +S + F D ++LI + +D Sbjct: 5 KSMEITFYKYQGTGNDFVMIDDR--KENFDAGDLALVSKICDRKFGVGADGLILIRNHKD 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D + N DGS+ CGNG RC V F S E I ++ ++ Sbjct: 63 --YDFEMIYFNADGSQ-SMCGNGARCAVAF--------SAFLEII-------SDKTQFLA 104 Query: 118 VDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175 +D E I+ L+ L +G V + + + V+ G+PH + V + Sbjct: 105 IDGPHEAIIQDGLVQLL------------MGDVEKIEEKAEDYFVNTGSPHHVRMVSK-I 151 Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACA 231 Y + G + M++ G N++ S E + +RT+ERGV L+ G ACA Sbjct: 152 SDYPVFDEGKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACA 211 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 V A + + + LGG L + + +++ G A++ + GK+ I Sbjct: 212 LVYAK---DQDKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263 >gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] Length = 286 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/269 (26%), Positives = 113/269 (42%), Gaps = 16/269 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G+GN LV D +T + + + +L D + + + N Sbjct: 7 KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGILEGPVLDGEQISMV-VWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEPIL 125 DGS Q GNG+R ++L +++K FT + G + N +G+ + MG+ Sbjct: 66 DGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVSF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDLAS 182 +P+ + R I +F R P+ V S+GNPH + + D++ + Sbjct: 126 WSDDVPV-------EGPRREIINETMVFGRIPYPVTCLSIGNPHCVILM-DEISKDLVCR 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G F E +N I +V + +ERG G T A GS CA+ A+ L T Sbjct: 178 IGRYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLT 237 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 + + V+M GG L +E V MTG+ Sbjct: 238 DPKMFVQMPGGTLELEIDGEGVVHMTGDV 266 >gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22] gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22] Length = 246 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 33/210 (15%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN R V + + + R F T GI+ A D I+ Sbjct: 60 NSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGIIKAVVEND----------IV 109 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFG 184 + +L ++ D F + HL V G PH + V+D +LY+++L + Sbjct: 110 ETQLTKAKVINEEFSEDGF----IWHL-------VDTGVPHLVTIVDDLNLYNHELCA-- 156 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ A++ + +++ +RT+ERGV G T ACG+ AS + + L N Sbjct: 157 -----KMRYKYNANVNFAKIEN-KTIKVRTYERGVEGETLACGTGMAASFLRANSLKLVN 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 V G L +N ++ G KK Sbjct: 211 DTTFVYPKSGEELTLSIKDNTIYFKGAVKK 240 >gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] Length = 281 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 45/292 (15%) Query: 10 KMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIR 65 KM+G GN ++ID R + A D ++ + + D+ D Sbjct: 13 KMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIWH 72 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGNG RC R ++ E R + D G P+ Sbjct: 73 FYNADGSRAEMCGNGSRCAA--------RLAYELEL--------AGRTHVLGTDAG-PVR 115 Query: 126 DWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYD---- 179 A + D + + P++ L+ +S G + V + H Sbjct: 116 -------AEVLPETDEAKVQLTAPID---LKTSMTLSAAGRELTVHHVNTGVPHVVQVVD 165 Query: 180 ------LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 LA+ L H F+ G N++ +VT +++ LRT+ERGV T ACG+ A A Sbjct: 166 DVDSVDLATIAPALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAA 225 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 +V + L A +V GG L +N ++++ G+A ++G+L +++ Sbjct: 226 AVYIANQLGLCAPAATVTTSGGEHLTISQENGNLYLQGQAVLVYKGRLFLRS 277 >gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] Length = 286 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 15/211 (7%) Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123 N DGS + GNG+R ++L +++K F T G + + N +G+ + MG+ Sbjct: 64 NPDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKV 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDL 180 +P+ + R I +F R P+ V S+GNPH + + D++ + Sbjct: 124 SFWSDDVPV-------EGPRREIINETMVFGRIPYPVTCLSIGNPHCVILM-DEISKDLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E +N I +V + +ERG G T A GS CA+ A+ L Sbjct: 176 CRIGRYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 T+ + V+M GG + +E ++ V +TG+ Sbjct: 236 LTDPKMLVQMPGGTMELEIEEDGTVLLTGDV 266 >gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] Length = 304 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 54/317 (17%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQ----- 56 + + F K G N +++D ++T + + AL TD + D ++ + Q Sbjct: 2 TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRAL-TDRRSGVGADGVIRVMRAQLSEEV 60 Query: 57 ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 D V+ F+ N DGS CGNG+R RFL R + G Sbjct: 61 RDLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTAL------GAAYPIA 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-----HLFLRNPFVVSM 162 R G ++ I DW + + + D R H V H R VSM Sbjct: 115 TRAGIRTI---RKIGDWYEVGMGPAQFLDDTAARTTGHDATVTIPMQPHEPARPGISVSM 171 Query: 163 GNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNL---------SIARVTSLESLD 211 GNPH + + D L DL + P+ G N+ + A T + Sbjct: 172 GNPHTVVALPDHDTLAELDLTRSPGV---DPVPVHGTNVEFVVPDGVDTAADGTVVGRAS 228 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHK-----TNRAVSVKMLGGGLLIEWHDNNHVF 266 +R +ERGVG T +CG+ ACA+ A LH+ + R ++ + GG + + + V Sbjct: 229 MRVYERGVGETQSCGTGACAAAAA---LHRWAGESSPRTWTITVPGGRVQVTL-GTHEVL 284 Query: 267 MTGEAKKEWEGKLDIKT 283 + G A+ +G + I + Sbjct: 285 LAGPAELVADGHITITS 301 >gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] Length = 353 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 117/299 (39%), Gaps = 63/299 (21%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI------------MLI 52 ++ F K +G GN ++ID R +N +D Q+ +L+ Sbjct: 88 VIHFYKYQGTGNDFILIDNR----------LNTFPKEDTKLVAQLCERRFGVGGDGLILL 137 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 D D D + N DG+ CGNG RC+V F ++ KE Sbjct: 138 ED--DPEHDFSMIYYNSDGNPSSMCGNGGRCIVAFAQKLG-------------VIQKEET 182 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFV 171 S + + + LI L +D HI V LFL + G+PH + V Sbjct: 183 TFSAPDGLHKALFKNNLIHLQM------QDVSHIEKVKKGLFL------NTGSPHYVEVV 230 Query: 172 EDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 + +L D+ G + P EGVN++ +RT+ERGV T +CG+ A Sbjct: 231 K-NLDSMDVKKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGA 289 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-KLDIKTGKWI 287 A+ +A KT + GG ++ +T E KKE+ G K+ T W+ Sbjct: 290 TATAIAMYKGGKTKAEYIILETKGG---------NLEVTFEVKKEFLGLKIKEYTNVWL 339 >gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129] gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae] Length = 297 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 71/181 (39%), Gaps = 30/181 (16%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----EN 111 A+ D F+ N DGS Q CGNG R ++ + F T G K ++ Sbjct: 78 AATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVRSFDD 137 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++VDMG S + IG L V MGNPH V Sbjct: 138 SQAEVTVDMG-------------SAEVTGVSTCTIGSQQFAGLG----VDMGNPHLACVV 180 Query: 172 ----EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 ++D+ + DL L F EGVN+ IA +R +ERGVG T +CG+ Sbjct: 181 PGYGQEDIENLDLV---KPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGT 237 Query: 228 A 228 Sbjct: 238 G 238 >gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] Length = 292 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 46/245 (18%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKE 110 +D + F+ N DGS + CGNG+R FL ++ T G+ + Sbjct: 66 EDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTVPIGTRAGVRDVQR 125 Query: 111 NRDGSISVDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + G VD+G W L PL R+ D R + +GNPH Sbjct: 126 SGSG-FQVDLGR----WALAGGEPLVRAKDLQ-------------VARPGLGIDVGNPHV 167 Query: 168 IFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGV 219 + + ED+L DLA F L P +EG N+ + V + + +R ERG Sbjct: 168 VVALSSEDELAEADLA-FAPQLDPEP--AEGANVELVVPADPLIVDGVGHITMRVHERGS 224 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS----VKMLGGGL---LIEWHDNNHVFMTGEAK 272 G T +CG+ A A+ +A H A V++ GG L + D HV ++G A+ Sbjct: 225 GETLSCGTGAAAAALA--IRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAE 282 Query: 273 KEWEG 277 ++G Sbjct: 283 LVFDG 287 >gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 263 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 39/282 (13%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++F K +G GN +++D R G ++ I L D ++L+ + D + D Sbjct: 1 MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DG E CGNG RCVV F R I V N I++D GE Sbjct: 59 MVYYNADGRESTMCGNGGRCVVAFA--------------REIGVMTGNSTRFIAID-GEH 103 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLAS 182 + D ++ + V + + +V + G+PH + +V D+ D+ + Sbjct: 104 ---------HATIDAQNKVHLQMKDVQTIDVHPDYVFLDTGSPHHVQWVA-DVDKVDVKT 153 Query: 183 FGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA-SGC 238 G L ++++ G N++ T+ + +RT+ERGV T +CG+ A +A Sbjct: 154 EGAALRYGDLYADKGGSNINFVSPTA-DGFAVRTYERGVEDETYSCGTGVTAVAIALYHT 212 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWE 276 T AV++ GG L + + V+++G A+K ++ Sbjct: 213 AQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFK 254 >gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 193 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + S N HF D ++++ + + Sbjct: 1 MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIIL---KYVAS 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRD 113 F+ N DGS+ CGNG+RC +L + + F +T+ G L + E D Sbjct: 58 MPFMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117 Query: 114 GSISVDMGEPILDWK-LIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAI 168 S V+MG+PI + K LI + ++ R++ +I ++++F MG H++ Sbjct: 118 FSARVNMGKPIFNIKELINTEK--EQFLREKINIDGKEIEISYIF--------MGTDHSV 167 Query: 169 FFVEDDLYHYDLASF 183 FV +D YD+ F Sbjct: 168 IFV-NDFSDYDIDEF 181 >gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] Length = 257 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 38/281 (13%) Query: 8 FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K + GN ++ID R G N +S N D ++L+ + D D + Sbjct: 5 FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG CGNG RC+ F K +T R VA + + E + Sbjct: 63 YFNSDGRPGSMCGNGGRCITAF----AKFLGIVGDTCR--FVASDG--------LHEARI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + + L R D +G + H +N ++ G+PH + V L YD+ G Sbjct: 109 SGESVSL-RMAD--------VGEIRHK--KNYSFLNTGSPHHVQEVSG-LEAYDVDREGK 156 Query: 186 LLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-T 242 L ++ ++ E G N++ + L +RT+ERGV T +CG+ A+ +A K Sbjct: 157 RL-RYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGKHP 215 Query: 243 NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 + ++ GG L + + + +++TG A+ ++G L Sbjct: 216 EQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTL 256 >gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7] Length = 273 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125 N DGS+ CGN RCV F + K+ F + + + I ++G IL Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 126 DWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D +IP R F D HI P +L + G PH + FVE+ + L + Sbjct: 120 D--VIPALRCEKFFSSDSVLEHI-PTFYL-------IDTGVPHLVGFVENKEWLNSLNAL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 170 ELRALRHAF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G + Sbjct: 227 PKKATLIPKSNESLELSLKNDEIFYKGAVR 256 >gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] Length = 258 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 36/282 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M++F K +G GN ++ID R ++ + A D LI D+ D + Sbjct: 1 MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLENDSQYDFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DG + CGNG RCVV F ++R++ F I G A D + + M + Sbjct: 61 VYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETL-FIAIDGEHRATIEGDNYVHLQM-K 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + P +++FL + G+PH + +V DD+ D+ Sbjct: 119 NVTSVEEHP------------------DYVFL------NTGSPHHVQWV-DDVETVDVKP 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G ++ ++++ ++ V+ E+ +RT+ERGV T +CG+ A +A Sbjct: 154 EGAVIRYGTLYADKGGSNVNFVSKGENGFKVRTYERGVEDETYSCGTGVTAVAIALYHTK 213 Query: 241 KTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEG 277 +T + +++ GG L + + + +++++G A+ +EG Sbjct: 214 QTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEG 255 >gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] Length = 299 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 93/245 (37%), Gaps = 45/245 (18%) Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL 106 I D D F+ N DGS + CGNG R + F + + K F T G+ Sbjct: 66 IADCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVK 125 Query: 107 VAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV 159 V D V+MG WK + D D + + P R F Sbjct: 126 VLTSLGDVPGLGKDVFQVEMGA----WK---------RGDVDGYEVTIPGTSGSARGTF- 171 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLD----- 211 V MGNPH + +ED +L+ K P N+ R+ D Sbjct: 172 VDMGNPHVVAVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEA 231 Query: 212 -LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 +R ERG G T +CG+ CA+ + +G H T + + GG L ++ D + V Sbjct: 232 TMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDVTDED-VK 285 Query: 267 MTGEA 271 +TG A Sbjct: 286 LTGSA 290 >gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] Length = 299 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 100/258 (38%), Gaps = 50/258 (19%) Query: 44 THFDQIMLIHDFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMK 93 TH + ++D Q A + D F+ N DGS + CGNG R + F + + Sbjct: 53 THPQAVSDLNDKQIAVCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPG 112 Query: 94 RKSFTFETIRGILVAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147 + F T G+ V D V+MG WK D D + + Sbjct: 113 GEPFRLGTRAGVKVLTSLGDVPALGNDVFQVEMGS----WKC---------GDFDGYEVT 159 Query: 148 -PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIAR 203 P R F V MGNPH + +ED +L+ K P N+ R Sbjct: 160 IPGTAGSARGTF-VDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVR 218 Query: 204 VTSLESLD------LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGG 253 + D +R ERG G T +CG+ CA+ + +G H T + + GG Sbjct: 219 IDEQSEGDNEGSATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGG 273 Query: 254 GLLIEWHDNNHVFMTGEA 271 L ++ D++ V +TG A Sbjct: 274 TLRVDVTDDD-VKLTGSA 290 >gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 282 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 27/287 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDF-QD 57 ++ V K+ G GN + ID R + + A + D ++ + + +D Sbjct: 4 KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN-RDGS 115 D N DGS + CGN RC F T G++ A+ + G Sbjct: 64 REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V++ P + + L D + RD H V+ G PHA+ F + D Sbjct: 124 AKVELTPP----RDLTLGIELDLGEGRDMVHF-------------VNTGVPHAVVF-KRD 165 Query: 175 LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 D+ + G L +H F+ G N + A+V ++ LRT+ERGV T ACG+ A A Sbjct: 166 ASTVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAG 225 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L V+V+ GG +L + VF++G+A + + G++ Sbjct: 226 AFIAHALGLAESTVNVRSSGGEILGISIEGGSVFLSGKAVRVFSGEM 272 >gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens] Length = 61 Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 K+ +F +G N++ +V +++R WERG G T ACG+ CASV+A+ L ++ V Sbjct: 4 KYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61 >gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] Length = 277 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 22/234 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDN-THFDQIMLIHDFQDASVDA 62 + F KM G GN + D R ++ + +AI A+ N D ++++ Q+ + D Sbjct: 1 MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQEEA-DV 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ CGN C + G + DG ++ + + Sbjct: 60 RVHYYNSDGTAADLCGNATLCSTAISAQWGITSASGMRLATGAGLINSRIDGLPAIAL-Q 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D R I P R F V+ G PH + E D D+A Sbjct: 119 PITDI-------------RPDMPIAPATAQGRRVGFAVA-GIPHLVILCE-DADAVDVAG 163 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 G L +H G N++ S RT+ERGV G T ACG+ A A+ V Sbjct: 164 AGPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAV 217 >gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 39/287 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60 + + F K +G GN ++ID R +++A D D +ML+ D ++ Sbjct: 2 TDQIKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQDTKN--F 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DG E CGNG RC+V F I G A DG + Sbjct: 60 DFEMVYYNADGREGSMCGNGGRCIVAFARDL---------NIIGEDAAFLAVDGPHQAQI 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + ++ ++I + D++ +D + +V++ G+PH I V D L + D+ Sbjct: 111 HDNQVNLQMIDV----DQISKDE------------SAYVLNTGSPHFIKIVSD-LKNMDV 153 Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVAS 236 G + + + EG+N++ +RT+ERGV G+ A A +A Sbjct: 154 YQEGYTIRNNATYKKEGINVNFVEKEE-NGYFVRTFERGVEDETFACGTGATAAAMAIAI 212 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 + + +++LGG L I + N H V++ G A +EG + Sbjct: 213 EENMEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259 >gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 119 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Query: 4 SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M + +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ Sbjct: 62 K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAE 110 >gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] Length = 246 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 35/211 (16%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN R V + + +G I+ + + Sbjct: 60 NSDGSDASMCGNATRAVTHYAYT----------------------NGLINTNQARFLTGA 97 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVED-DLYHYDLASF 183 +I D ++ +N F + F+ V G PH + V+D +LY+++L + Sbjct: 98 GIIKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVDDLNLYNHELCA- 156 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + N++ A++ + +++ +RT+ERGV G T ACG+ AS + + L Sbjct: 157 ------KMRYKYNANVNFAKIEN-KTIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 N V G L +N ++ G KK Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKK 240 >gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] Length = 299 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 45/245 (18%) Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL 106 I D D F+ N DGS + CGNG R + F + + K F T G+ Sbjct: 66 IADCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVK 125 Query: 107 VAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV 159 + D V+MG WK + D D + + P R F Sbjct: 126 ILTSLGDVPGLGKDVFQVEMGA----WK---------RGDVDGYEVTIPGTSGSARGTF- 171 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLD----- 211 V MGNPH + +ED +L+ K P N+ R+ D Sbjct: 172 VDMGNPHVVAVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEA 231 Query: 212 -LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 +R ERG G T +CG+ CA+ + +G H T + + GG L ++ D + V Sbjct: 232 TMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDVTDED-VK 285 Query: 267 MTGEA 271 +TG A Sbjct: 286 LTGSA 290 >gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] Length = 249 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K S Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPSM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 F T G++ AK N+D + V +G K+ + +F+K+ G L Sbjct: 91 IFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEKL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 G PH + F + L F +L + N++ ++ L +RT+ER Sbjct: 132 --CDTGVPHLVHFCQ------SLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K V + G + + N +F G+ K +E Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEMGFAYKNEELFFEGKVKYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 283 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SD-AINALSTDDNTHFDQIMLIHDFQD-ASVD 61 V F KM+G GN + ID R + D A + D ++ + + D VD Sbjct: 9 VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKEN-RDGSISVD 119 N DGS + CGN RC + T G + A+ + G + V+ Sbjct: 69 YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + L + R D+ F V+ G PHA++ ++ D D Sbjct: 129 LTPP-KELSLNNVLRFGDETHEIHF---------------VNTGVPHAVW-LDADAAALD 171 Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + + G L H F+ G N + V ++ LRT+ERGV T ACG+ A A V + Sbjct: 172 VRALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITH 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T V+V+ GG LL ++ VF+ G+A + G++ ++ Sbjct: 232 ALGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPES 277 >gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 64/288 (22%), Positives = 118/288 (40%), Gaps = 41/288 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60 + + F K +G GN ++ID R ++A D D +ML+ D + + Sbjct: 2 TDQIKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQDTK--NF 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG E CGNG RC+V F + R+ F + DG Sbjct: 60 DFEMVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAV----------DGPHQAQ 109 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + ++ ++I + D++ +D +V++ G+PH I V DL + D Sbjct: 110 IHDNQVNLQMIDV----DQITKD------------ETAYVLNTGSPHFIKIVS-DLKNMD 152 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + + + +EG+N++ +RT+ERGV + + Sbjct: 153 VYKEGYTIRNNATYKNEGINVNFVEKEE-NGYFVRTFERGVEDETLACGTGATAAAMAMS 211 Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + + + +++LGG L I + V++ G AK +EG + Sbjct: 212 IEENMEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259 >gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] Length = 273 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + D + R N+ L N P ++++ G PH + FV++ + L + Sbjct: 110 ESNLGNYEILDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLNTL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 170 ELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G A+ Sbjct: 227 PKKATLIPKSNEFLELSLKNDEIFYKGVAR 256 >gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99] gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99] Length = 273 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNIV 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P ++++ G PH + FV++ L + Sbjct: 110 ESNLGNYQILDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLNTL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T Sbjct: 170 ELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFHNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G A+ Sbjct: 227 PKKATLIPKSNEFLELSLKNDGIFYKGVAR 256 >gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1] gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327] Length = 249 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F+ K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 +F T G++ AK N+D + V +G K+ + +F+++ G L Sbjct: 91 SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 + G PH + F + +L F +L + N++ ++ L +RT+ER Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K V + G + + N +F G+ K +E Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa] Length = 108 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 8 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 67 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 68 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108 >gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 253 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 25/224 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K E GN +V++ H D S D +++ D++V +R Sbjct: 1 MQFWKFEAEGNSYIVVESSNLH---AVDIPAICSKRTGLSGDGLLVAEWLTDSTVH--MR 55 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DG+E CGNG RCV F + + R + I V K GE + Sbjct: 56 VFNADGTEAPMCGNGARCVAAF--AYVNRPQLRDQDI----VIKAQGATVTHRLAGEEGM 109 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + + + +RD +N + + +G+PH + DL +L G Sbjct: 110 KFN------ATIRFERDPL----INKYGEESRYQYVVGSPHLVILT--DLEAVNLTHEGP 157 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + F G N+ A V + + WERGVG+ C + + Sbjct: 158 IY--EATFDGGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGS 199 >gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205] gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205] Length = 278 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 53/239 (22%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS---FTFETIRGILVAKENRDGSISV 118 F+ N DGS + CGNG R VR+L S + S T G++ A+ +G ++V Sbjct: 67 FMDYWNSDGSAAEMCGNGARVFVRYLLESGLAAPSGAVLPVATRAGVVRARVEGEG-VAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +M P L + + L L V +GNPH + V L Sbjct: 126 EMRRPRLAGA----------------SVAGLGGLALPG-TAVDVGNPHLVCPVPAGLELS 168 Query: 179 DLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLD-------LRTWERGVGLTAACG 226 L L + P +F GVN+ VT + +D +R +ERG T +CG Sbjct: 169 ALD-----LTRAPEFDPVVFPAGVNVEF--VTVGDPVDGADGHVRMRVYERGSAETHSCG 221 Query: 227 SAACASVVASGCLHKTNR---AVSVKMLGGGLLIE------WHDNNHVFM-TGEAKKEW 275 + ACA VA+ L R V+V + GG L++ W V + TGE + W Sbjct: 222 TGACA--VAAVALRDGGRDTGVVAVDVPGGRLVVTLTTQSCWLSGPAVLVATGEVSRGW 278 >gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] Length = 308 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 72/181 (39%), Gaps = 30/181 (16%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D F+ N DG V+ CGNG R FL + R + T G L++ + Sbjct: 87 DWFMDYRNADGGVVEMCGNGARVFAHFLRALGLEPRGDYAIGTRAGAKRVRLLSFDGGGA 146 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SV+MG L P A S R F + +GNPH + + Sbjct: 147 EVSVEMGRVRLGG---PSATSVAGAPRGCF-----------SGTSADVGNPHLVCLAQ-- 190 Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 DL L L + P +F EGVN+ S + LR ERGVG T ACG+ Sbjct: 191 --GLDLDGLAALDLTRQPDYDKAVFPEGVNIEFVVPHSPDKATLRVHERGVGETKACGTG 248 Query: 229 A 229 + Sbjct: 249 S 249 >gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni IA3902] Length = 249 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 95/245 (38%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 +F T GI+ AK N+D + V +G K+ + +F+++ G L Sbjct: 91 SFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 + G PH + F + +L F +L + N++ ++ L +RT+ER Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K V + G + + N +F G+ K +E Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 382 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/272 (22%), Positives = 99/272 (36%), Gaps = 51/272 (18%) Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-- 109 I Q+ + R+ G E CGNG+ C+ +L + S + T + K Sbjct: 73 IQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTEIPLATPKVI 132 Query: 110 -----ENRDGSISVDMGEP--------------ILDWKLIPLARSFDKMDRDRFHIGPVN 150 +NR GS V++G P ++D + + K D + Sbjct: 133 KIGTDQNRVGSW-VNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRADDLKAYTTD 191 Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA---------------SFGNLLAKH----- 190 + +V G PH + F + D + A SFG+ L +H Sbjct: 192 NELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSWLVEHIGNYM 251 Query: 191 -----PMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGCLHKTNR 244 +F G+N++ AR + ++ R +ERG+ T ACG+ A A +HK N Sbjct: 252 NNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIYSQMHKLNI 311 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + V +L WHD + W+ Sbjct: 312 S-EVDVLPHRCC--WHDKKAKICIKQNSDGWQ 340 >gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] Length = 341 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 101/267 (37%), Gaps = 57/267 (21%) Query: 52 IHDFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104 +H F +A +A F+ N DGS Q CGN +R + L S T T G Sbjct: 78 VHRFHEAVPEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGG 137 Query: 105 ILVAKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVV 160 R G + +VDMG +LI + ++D + + V L P + Sbjct: 138 ARTL--TRAGQLWTVDMGPA----RLIRPEHALGEVDDEGWDTA-VTVPGLEGPRAALSI 190 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLL-----AKHPMFSEGVNLSIARVTSLES------ 209 +M NPH + + ++ D A F L P+ +G NL + ES Sbjct: 191 AMPNPHTVVALSEE-AELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAE 249 Query: 210 --------------LDLRTWERGVGLTAACGSAACASVVASGCLHK-----TNRAVSVKM 250 +R ERGVG T +CG+ CA VA LH+ + + Sbjct: 250 STGQDAEASVRVGRARMRVLERGVGETRSCGTGCCAVAVA---LHEWEGEDAPTDYLIDV 306 Query: 251 LGGGLLI-----EWHDNNHVFMTGEAK 272 LGG + + W + V +TG A Sbjct: 307 LGGQVGVHVGADPWAPDATVLLTGPAT 333 >gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] Length = 249 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 +F T G++ AK N+D + V +G K+ + +F+++ G L Sbjct: 91 SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 + G PH + F + +L F +L + N++ ++ L +RT+ER Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K V + G + + N +F G+ K +E Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908] gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018] gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017] Length = 273 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + D + R N L N P ++++ G PH + FV++ L S Sbjct: 110 ESNLGNYEILDTIPNLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVKNKGL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G A+ Sbjct: 227 PKKATLIPKSNEFLELSLKNDEIFYKGVAR 256 >gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 255 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 25/178 (14%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMK-RKSFTFETIRGILVAKENRD-- 113 A D ++ N DGS Q CGNG+R +L S M+ R F + G +R Sbjct: 29 APGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGMEGRDEFVVASAAGPRPVTVHRADA 88 Query: 114 --GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--- 168 I+VDMG+ P +F+ R G V +GNPH Sbjct: 89 TRADITVDMGKANTLGSGGP---AFEATVGGRRFAG----------LGVDVGNPHLACVD 135 Query: 169 -FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 DDL D+A+ + H F EGVN+ + + ++ +R ERGVG T +C Sbjct: 136 PALTADDLAGLDVAA--PVSFDHAQFPEGVNIEVLTAPADGAVRMRVHERGVGETRSC 191 >gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702] Length = 292 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 94/253 (37%), Gaps = 56/253 (22%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDAS 59 S ++F K G GN +++ G ++T + + L+ +I DA Sbjct: 2 SALEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAG 61 Query: 60 V-----------DAFIRIINCDGSEVQSCGNGMRCVVRFL-------------TSRMKRK 95 V D F+ N DGS + CGNG+R L +R R+ Sbjct: 62 VIDEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRR 121 Query: 96 SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR 155 T + G +SVDMG P++ L S + + +H V+ Sbjct: 122 ELTVHAVAGTTA-------DVSVDMGAPVV------LGESSATLAGETYHGTGVD----- 163 Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHP-MFSEGVNLSIARVTSLESLDL 212 MGNPH + V L LA+ G L P F GVNL + + + Sbjct: 164 ------MGNPH-LACVVPGLSPEKLATLPVGLLPEWDPAFFPAGVNLELVTAPVDGVVHM 216 Query: 213 RTWERGVGLTAAC 225 R ERGVG T +C Sbjct: 217 RVHERGVGETLSC 229 >gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 283 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 77/186 (41%), Gaps = 46/186 (24%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI- 116 F+ N DGS + CGNG+R +L + + FT T R + V +RD ++ Sbjct: 71 FMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSADRDDAVV 130 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVED 173 VDMG P A + G + PF V +GNPH V Sbjct: 131 RVDMG---------PAAVT-----------GISTCMIADQPFAGMGVDLGNPHLACVVPG 170 Query: 174 DLYHYDLASFGNLLAKHPMF-----SEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 A+ N+ + P+F GVN+ + VT L ++ +R WERGVG T Sbjct: 171 ----LTPAALKNIALEAPVFDTAFFPRGVNVEL--VTELADGLDDPAIHMRVWERGVGET 224 Query: 223 AACGSA 228 +CG+ Sbjct: 225 RSCGTG 230 >gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] Length = 249 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 33/235 (14%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILV 107 ++L H+ D + + N DGS CGNG R F K + +F T GI+ Sbjct: 45 VILPHEKYDFEWEFY----NNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIK 100 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 AK N+D + V +G K+ + +F+++ G L G PH Sbjct: 101 AKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL-------CDTGVPHL 139 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACG 226 + F + +L F +L + N++ ++ L +RT+ERGV T ACG Sbjct: 140 VHFCQ------NLDEFNTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACG 193 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + A + K V + G + + N +F G+ K +E + Sbjct: 194 TGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248 >gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] Length = 276 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111 A D F+ N DGS + CGNG R ++ SR + +SF T G + + + Sbjct: 63 APADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSFDE 122 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 D +SV+MG + S M + F V MGNPH + V Sbjct: 123 HDAQVSVEMGPAEV------TGVSTASMVGENF-----------AGLGVDMGNPH-LAAV 164 Query: 172 EDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 L LA +F H F GVN+ + ++ +R +ERGVG T +CG+ Sbjct: 165 IPGLTPESLADMAFAQPEFDHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGTGT 224 Query: 230 CASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 A+ A+ V V + GG + +E D +TG ++ EG Sbjct: 225 VAAARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEG 272 >gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] Length = 264 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 131/304 (43%), Gaps = 64/304 (21%) Query: 5 MVDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIM 50 M+ F K +G GN ++ID R CH A + +++ +D M Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLENDPQYDFRM 60 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + + N DG E CGNG RCVV F KR I + E Sbjct: 61 VYY--------------NSDGRESTMCGNGGRCVVAF----AKRLGIIEHETLFIAIDGE 102 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +R + G+ + ++ ++ +++ + ++FL + G+PH + + Sbjct: 103 HR----ATIEGDSYVRLQM----KNVTEVEEHK------GYVFL------NTGSPHHVQW 142 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSA 228 VE ++ D+ S G + +++ ++ V+ E +RT+ERGV T +CG+ Sbjct: 143 VE-EVDTVDVKSEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTG 201 Query: 229 ACASVVASGCLHKTN-RAVSVKMLGGGLLI------EWHDNNHVFMTGEAKKEWEGKLDI 281 A +A + +T+ + +++ GG L + E ++N ++++G A+ +EG ++ Sbjct: 202 VTAVAIALYHIGETDAQQITLHTRGGDLQVAFDRVGEGYEN--IYLSGSAQFVFEGTIEE 259 Query: 282 KTGK 285 GK Sbjct: 260 LKGK 263 >gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] Length = 330 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 19/200 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 L+ D DA+ F+ N DGS + CGNG+R V F + E + G Sbjct: 79 LLADVPDATW--FMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLGTRAGVR 136 Query: 111 NRDGSISVDMGEPILDWKLIPLARSF----DKMDRDRF--HIGPVNHLFLRNPFVVSMGN 164 D G P W + + R + + RD F + +R V +GN Sbjct: 137 RVRRVPVPD-GLPDAVWYAVDMGRWYLPGGEDAVRDGFDAQVAVAGLADVRPALGVDVGN 195 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---------LESLDLRTW 215 PH + + D A P+ G N+ + + + +R Sbjct: 196 PHTVLALPGP-EELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVH 254 Query: 216 ERGVGLTAACGSAACASVVA 235 ERGVG T +CG+ ACA+ +A Sbjct: 255 ERGVGETRSCGTGACAAALA 274 >gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] Length = 249 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 43/246 (17%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRN 156 +F T G++ AK N+D + V +G K+ + +F+++ + +F Sbjct: 91 SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEELGKTWQF------------ 131 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 G PH + F + +L F +L + N++ ++ L +RT+E Sbjct: 132 ---CDTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYE 182 Query: 217 RGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 RGV T ACG+ A + K V + G + + N +F G+ K + Sbjct: 183 RGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCF 242 Query: 276 EGKLDI 281 E + Sbjct: 243 EANYNF 248 >gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] Length = 277 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 25/229 (10%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 D+ + F+ N DGS + CGNG+R R+L F T G + + D Sbjct: 62 SDSEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDD 121 Query: 114 GSISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 S++V MG + + + R + D + NP +VS+ + Sbjct: 122 LSVTVHMGAATITGTSVAVVGGRELSGVAVD-----------VGNPHLVSVLDDDVDELD 170 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D YD +F EGVNL V E L +R +ERGVG T ACG+ A Sbjct: 171 LRDAPRYDTE----------VFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVA 220 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V A+ L + S + GG + +TG A+ +G+LD Sbjct: 221 AVAAALHLRGVDTGESTVDIPGGRVSVTVGKGVSTLTGPAEFVAKGELD 269 >gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3] Length = 249 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 29/219 (13%) Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 57 EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG-- 113 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K+ + +F+++ G L G PH + F + +L F Sbjct: 114 ----KIKSVQNTFEEL-------GKTWQL-------CDTGVPHLVHFCQ------NLDEF 149 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 150 DTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + G + + N +F G+ K +E + Sbjct: 210 QNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248 >gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] Length = 249 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 29/219 (13%) Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 57 EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG-- 113 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K+ + +F+++ G L G PH + F + +L F Sbjct: 114 ----KIKSVQNTFEEL-------GKTWQL-------CDTGVPHLVHFCQ------NLDEF 149 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 150 DTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + G + + N +F G+ K +E + Sbjct: 210 QNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248 >gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 313 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 49/196 (25%) Query: 56 QDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILV 107 Q VD F+ N DGS + CGNG+R +L + + FT T R + V Sbjct: 91 QTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTV 150 Query: 108 AKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMG 163 +RD ++ VDMG P A + G + PF V +G Sbjct: 151 LSADRDDAVVRVDMG---------PAAVT-----------GISTCMIADQPFAGMGVDLG 190 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMF-----SEGVNLSIARVTSL------ESLDL 212 NPH V A+ N+ + P+F GVN+ + VT L ++ + Sbjct: 191 NPHLACVVPG----LTPAALKNIALEAPVFDTAFFPRGVNVEL--VTELADGLDDPAIHM 244 Query: 213 RTWERGVGLTAACGSA 228 R WERGVG T +CG+ Sbjct: 245 RVWERGVGETRSCGTG 260 >gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] Length = 287 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 34/214 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+ N DGS + CGNG R VRFL S I G+L R G + Sbjct: 75 FMDYWNSDGSFAEMCGNGARVFVRFLL-----DSGLATPIHGVLPVA-TRAGLVRAR--- 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNP-FVVSMGNPHAIFFVEDDLYHYDL 180 LD + I + +M R R + L L P V +GNPH + + L L Sbjct: 126 --LDGEDIAV-----EMRRPRLYATSTAALGALTLPGTAVDVGNPHLVCPLPAGLELTGL 178 Query: 181 ASFGNLLAKHP-----MFSEGVNLSI-ARVTSLESLD----LRTWERGVGLTAACGSAAC 230 L + P +F GVN+ A L+ +D +R +ERG T +CG+ AC Sbjct: 179 D-----LTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGTGAC 233 Query: 231 A-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 A + VA + + ++V + GG L + DN+ Sbjct: 234 AVAAVALRDIARETGTIAVDVPGGRLTVTLTDNS 267 >gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] Length = 257 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 39/197 (19%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +D + N DGSE CGNG R C + + + F T GI+ A + D + Sbjct: 59 SKIDFEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVL 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 S I+D +++ +S+ +++ G PH ++F + D+ Sbjct: 119 SELTPPKIIDKEILENGKSW---------------------WLLDTGVPHLVYFTK-DIT 156 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+A L K+ N++IA + ++L +RT+ERGV T ACG+ A Sbjct: 157 KFDIAEARELRDKY-----NANVNIAFIEG-KNLRVRTYERGVEDETLACGTGMAA---- 206 Query: 236 SGCLHKTNRAVSVKMLG 252 C + RA S K++G Sbjct: 207 --CFY---RAYSEKVVG 218 >gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] Length = 321 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 31/241 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGIL-VAKENRDG 114 F+ N DGS Q CGNG+R R+ + T +R ++ A E DG Sbjct: 85 FMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEVGDG 144 Query: 115 S-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-- 171 +V MG L LA D H+G R V +GNPH + + Sbjct: 145 PWFTVGMGVVTLVGGDDALASGGDA----EVHVG--GLAVTRPGLSVDVGNPHTVVVLAQ 198 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSI---------ARVTSLESLDLRTWERGVGLT 222 E DL DL S + P+ ++G N+ + A T++ + +R ERGVG T Sbjct: 199 EGDLEQADLTSAPVV---RPVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGVGET 255 Query: 223 AACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +CG+ A A+ A V + GG + + H + + G A E ++D Sbjct: 256 RSCGTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEARVD 315 Query: 281 I 281 + Sbjct: 316 L 316 >gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180] gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180] Length = 273 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P ++++ G PH + FV++ + L + Sbjct: 110 ESNLGNYQILDTIPALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLNTP 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T Sbjct: 170 ELRALRHEF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G A+ Sbjct: 227 PKKATLIPKSNESLELSLKNDGIFYKGVAR 256 >gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] Length = 291 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 109/302 (36%), Gaps = 44/302 (14%) Query: 3 SSMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 SS + FAK G N +V+ D G D + D ++ + + A D Sbjct: 2 SSGIRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAGPD 61 Query: 62 A---------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI-- 105 F+ N DGS + CGNG+R R+L T G+ Sbjct: 62 VPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEALLPDGPGAELALGTRGGVRT 121 Query: 106 --LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVV 160 + DG +SV MG +AR D+ R + G V Sbjct: 122 VRFAGGDGADGEVSVGMG----------VARVGDESTATVRGHAYAG----------VAV 161 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV 219 +GNPH D G P +F GVN+ S + + +R ERGV Sbjct: 162 DVGNPHLACVTAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGV 221 Query: 220 GLTAACGSAACASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+VVA+ +R V V GG L + + + G A G+ Sbjct: 222 GETRSCGTGTVAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGE 281 Query: 279 LD 280 +D Sbjct: 282 ID 283 >gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH] gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH] Length = 242 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 36/210 (17%) Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGSE + CGNG R + + + K F TI G++ A+ DG I + Sbjct: 57 QFYNADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAE--VDGDI---VESQ 111 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + K+I + D G PH V+ D D+ SF Sbjct: 112 LTEHKIIKEVGEWKLFD---------------------TGVPH---LVKID----DINSF 143 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 A+ + N+++A V +L +RT+ERGV T ACG+ CAS + + Sbjct: 144 NIEEARKLRYEHNANVNVAEVKD-GNLYVRTYERGVEDETLACGTGMCASFLFAREQGLV 202 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 V+V G L NN ++ G+ K Sbjct: 203 GNEVTVYPKSGEELHIKLKNNRLYFKGKVK 232 >gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC 25291] Length = 231 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 25/178 (14%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENR 112 A+ D ++ N DGS Q CGNG+R +L + R F ++ G + V + Sbjct: 5 AAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADA 64 Query: 113 DGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFF 170 G+ +SVDMG+ L ++F+ R G V +GNPH A Sbjct: 65 TGADVSVDMGKAN---TLGSGGKAFEATVGGRRFAG----------LAVDVGNPHLACLD 111 Query: 171 VE---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 E D+L D+A+ + A F +GVN+ + + + +R ERGVG T +C Sbjct: 112 PELSVDELAALDVAAPVSFDAAQ--FPDGVNVEVLTAPAAGVVHMRVHERGVGETRSC 167 >gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4] gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4] Length = 319 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 70/182 (38%), Gaps = 33/182 (18%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKENR 112 D F+ N DGS + CGNG+R L T R + T G +V++ Sbjct: 91 PADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGPRPATIVSRSGD 150 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D + VDMGEP L L S ++ F V MGNPH V Sbjct: 151 DAVVRVDMGEPRL------LGLSSAELGGRTF-----------AGVAVDMGNPHLACVVP 193 Query: 173 DDLYHYDLASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 D A+ L P F GVN+ IA + + +R ERG G T +CG Sbjct: 194 G----LDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGAGETMSCG 249 Query: 227 SA 228 + Sbjct: 250 TG 251 >gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 292 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 56/247 (22%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKR----KSFTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R VR+L SR+ + + T G+ + G Sbjct: 73 FMDYYNADGSAAEMCGNGIRVYVRYLIESRLVQLADGDTLPIGTRSGVRDVQRTLSG-FQ 131 Query: 118 VDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VD+G W+L PL R+ + PV L L + +GNPH + + D+ Sbjct: 132 VDLGR----WRLAGGEPLVRAKEL---------PVARLGLG----IDLGNPHVVVALADE 174 Query: 175 ----------LYHYDLASFGN-----LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 + H + A G ++ P+ +GV + +R ERG Sbjct: 175 SELESADLTYIPHLEPAPQGGANVEFVVPHEPLVKDGVG----------RIRMRVHERGS 224 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGL---LIEWHDNNHVFMTGEAKKE 274 G T +CG+ A A+ +A N V + GG + + D HV ++G A+ Sbjct: 225 GETLSCGTGAAAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPAELV 284 Query: 275 WEGKLDI 281 + G L++ Sbjct: 285 YTGALEL 291 >gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24] Length = 272 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P ++++ G PH + FV++ L S Sbjct: 110 ESNLGNYQILDTIPNLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVKNKGL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A + + H T Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFHNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G A+ Sbjct: 227 PKKATLIPKSNESLELSLKNDEIFYKGVAR 256 >gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] Length = 289 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G +L A Sbjct: 71 DWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPVVLNALAGVGA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MG K L + +F N V +GNPH + V+ Sbjct: 131 DVTVEMG------KANQLGVGAATVGGRQF-----------NGLAVDVGNPH-LACVDAA 172 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +LA+ ++ F +GVN+ + ++ +R ERGVG T +CG+ A Sbjct: 173 MSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGETRSCGTGTVA 232 Query: 232 SVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNN 263 + VA+ H+ ++ +++V++ GG +++ D N Sbjct: 233 AAVAA-LAHQGSQTGSLTVRIPGGEVVVTITDAN 265 >gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16] Length = 273 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52] Length = 273 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P +++ G PH + FVE+ L S Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVENK---EGLNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A +AS + Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNM 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKATL 232 >gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] Length = 264 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 131/304 (43%), Gaps = 64/304 (21%) Query: 5 MVDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIM 50 M+ F K +G GN ++ID R CH A + +D+ +D M Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEDDPQYDFRM 60 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + + N DG E CGNG RCVV F K+ I V E Sbjct: 61 VYY--------------NSDGRESTMCGNGGRCVVAF----AKQLGIIEHETLFIAVDGE 102 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +R + G+ + ++ ++ +++ + ++FL + G+PH + + Sbjct: 103 HR----ATIEGDSYVRLQM----KNVTEVEEHK------GYVFL------NTGSPHHVQW 142 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSA 228 VE ++ D+ S G + +++ ++ V+ E +RT+ERGV T +CG+ Sbjct: 143 VE-EVDAVDVKSEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTG 201 Query: 229 ACASVVASGCLHKTN-RAVSVKMLGGGLLI------EWHDNNHVFMTGEAKKEWEGKLDI 281 A +A + +T+ + +++ GG L + E ++N ++++G A+ ++G ++ Sbjct: 202 VTAVAIALYHIGETDAQQITLHTRGGDLQVAFDRVGEGYEN--IYLSGSAQFVFDGTIEE 259 Query: 282 KTGK 285 GK Sbjct: 260 LKGK 263 >gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231] gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002] gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19] Length = 297 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 92/234 (39%), Gaps = 33/234 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDG 114 D F+ N DGS + CGNG R +L SR + F+ T G A D Sbjct: 81 DYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTVSVHAFSATDA 140 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172 +SVDMG + IG ++ + V MGNPH V Sbjct: 141 DVSVDMGP-------------AEVTGVSTCRIGTASYAGMG----VDMGNPHLACVVPGL 183 Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGVGLTAACGSAA 229 L DL + F EGVN+ + + + +R +ERGVG T +CG+ Sbjct: 184 TPQALAEVDLV---QPVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGVGETRSCGTGT 240 Query: 230 CASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A+ ++ + V V + GG + + + V + G +K G+LD + Sbjct: 241 VAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQLDTR 293 >gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d] Length = 273 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 + ++ L N+ +F G + Sbjct: 227 PKKAALIPKSNESLELSLKNDEIFYKGAVR 256 >gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] Length = 298 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 42/227 (18%) Query: 61 DAFIRIINCDGSEVQSCGNGMRC-----VVRFLTSRMKRK------SFTFETIRG----I 105 D F+ N DGS + CGNG R V + L S R SFT T G Sbjct: 79 DWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKGISFTVGTRAGAKPVT 138 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 + A ++R +SV+MG P + + S +M F V MGNP Sbjct: 139 VHACDSRRADVSVEMGVPEV------MGLSTAQMAG-----------FFYAGLGVDMGNP 181 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVG 220 H + + D + L+ + P+ F G+N+ + +++R +ERGVG Sbjct: 182 H----LAATIPGLDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDGEVNMRVFERGVG 237 Query: 221 LTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF 266 T +CG+ A+ V++ +V+V + GG + +E ++ Sbjct: 238 ETRSCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGSTL 284 >gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] Length = 251 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 21/191 (10%) Query: 72 SEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPILDWKLI 130 S +CGNG+R + F + K S F +++ +N+ +I P K+I Sbjct: 64 SRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIPNFFKKII 123 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 R F+ FL++ FV + N H I +++ + Y L F N + + Sbjct: 124 L---------RIEFY-------FLKSGFV-ELNNLHFITIIKN-IKTYYLFFFYNKI--N 163 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F+ VN+ ++ +R +E+GVG T +CG+ +S ++K +V Sbjct: 164 FFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKINLFNVYS 223 Query: 251 LGGGLLIEWHD 261 LGG I + D Sbjct: 224 LGGFSKISFFD 234 >gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1] Length = 290 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 72/181 (39%), Gaps = 37/181 (20%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117 V+ F+ N DGS + CGNG+R R+L R T G+ A + D ++S Sbjct: 70 GVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTATLSGD-TVS 128 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVED 173 VDMG P+A IGP + + +GNPH Sbjct: 129 VDMG---------PVA------------IGPASVATTGGARFDGIALDVGNPHLACVTAT 167 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGLTAACGS 227 D DL G +F GVN+ VT L+ + +R ERGVG T ACG+ Sbjct: 168 DPDALDLT--GAPAVDPEVFPRGVNVEF--VTPLDGPADGGRVRMRVHERGVGETLACGT 223 Query: 228 A 228 Sbjct: 224 G 224 >gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 283 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 51/245 (20%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGI---LVA 108 Q + F+ N DGS + CGNG R VR+L + + + + T G+ LVA Sbjct: 60 QAGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETGLAVPEGAALSVATRAGVVRALVA 119 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 E +ISV++ P + A S + L L V +GNPH + Sbjct: 120 GE----AISVEVRRPRV------YATSTAAL----------GGLTLAG-SAVDVGNPHLV 158 Query: 169 FFVEDDLYHYDLASFGNL-LAKHP-----MFSEGVNLSI-ARVTSLESLD----LRTWER 217 + L G L L + P +F GVN+ A ++ D +R +ER Sbjct: 159 CALPAGL------ELGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYER 212 Query: 218 GVGLTAACGSAACASVVASGCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 G T +CG+ ACA VA+ LH R V+V + GG L + D++ ++ G A Sbjct: 213 GSAETLSCGTGACA--VAAVALHDAGRNTGTVAVDLPGGRLTVTMTDDS-CWLAGPALLV 269 Query: 275 WEGKL 279 G L Sbjct: 270 ASGTL 274 >gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30] Length = 273 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P + + G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKATL 232 >gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] Length = 249 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 92/245 (37%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAPMCGNGSRAAAHFAHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 +F T I+ A N D + V +G K+ + +F+++ G L Sbjct: 91 SFLTGAKIIKANVNHD-RVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 G PH + F E+ L F +L + N++ ++ SL +RT+ER Sbjct: 132 --CDTGVPHLVHFCEN------LDEFDTILCQKMRQKYNANVNFVKILDKNSLKVRTYER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K V + G + + N +F G+ K +E Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNEVKITPKSGEEVRFKYKNEELFFEGKVKYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75] Length = 273 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 22/188 (11%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124 N DGS+ CGN RCV F ++ R I + E + I ++G I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPN-IIESNLGNYKI 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 LD +IP R ++F N L N +++ G PH + FV++ + L Sbjct: 119 LD--IIPALRC------EKFF---TNDSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +AS + Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFY 224 Query: 241 KTNRAVSV 248 T + ++ Sbjct: 225 NTPKKATL 232 >gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464] Length = 273 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A VA+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYST 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 ++ L N+ +F G + Sbjct: 227 PEKAALIPKSSESLELSLKNDEIFYKGAVR 256 >gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] Length = 312 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 26/176 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117 F+ N DGS + CGNG+R V +L + ET++ G+ + +G + Sbjct: 83 FMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVARTEEG-YA 141 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175 +DMG W I + + H+ + R +SMGNPH + + E L Sbjct: 142 IDMGP----WSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGKL 195 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVGLT 222 DL S + +P +G N+ LE+ D +R +ERGVG T Sbjct: 196 DGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGET 248 >gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567] gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567] Length = 312 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 26/176 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117 F+ N DGS + CGNG+R V +L + ET++ G+ + +G + Sbjct: 83 FMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVARTEEG-YA 141 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175 +DMG W I + + H+ + R +SMGNPH + + E L Sbjct: 142 IDMGP----WSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGKL 195 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVGLT 222 DL S + +P +G N+ LE+ D +R +ERGVG T Sbjct: 196 DGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGET 248 >gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8] gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8] Length = 273 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 20/187 (10%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124 N DGS+ CGN RCV F + ++ R I + E + I ++G I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPN-IIESNLGNYKI 118 Query: 125 LDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LD IP R +F D HI +++ G PH + FV++ + L S Sbjct: 119 LD--TIPALRCKNFFSSDSVLEHISTF--------YLIDTGVPHLVGFVKNKEW---LNS 165 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 166 LNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSV 248 T + ++ Sbjct: 226 TPKKAAL 232 >gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27] gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27] Length = 272 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 18/182 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N +++ G PH + FV++ L S Sbjct: 110 ESNLGNYKILDTIPALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKKL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A +AS + T Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFYNT 226 Query: 243 NR 244 + Sbjct: 227 PK 228 >gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] Length = 300 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 41/242 (16%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111 + VD F+ N DGS + CGNG+R F + + FT + G + + + Sbjct: 74 SGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGARPVRIHSADE 133 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 D +SV MG +L+ +G V +GNPH V Sbjct: 134 TDAEVSVSMGPVVLEGA---------------GRVGIAGRTLTGE--AVDVGNPHLACVV 176 Query: 172 ED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGV 219 + DL DL + L A F G N+ I + S +R +ERGV Sbjct: 177 DGLTVADLAGLDLTTGAELDAAQ--FPHGANVEILTPLTAASDGGSADFHAHMRVFERGV 234 Query: 220 GLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G T +CG+ A+ A SG ++ AV++ + GG +L+ D + V + G ++ G Sbjct: 235 GETRSCGTGLVAAAAAALSGAGRESG-AVAITVPGGDVLVTVADGSAV-LRGPSRLVARG 292 Query: 278 KL 279 +L Sbjct: 293 EL 294 >gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470] gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470] Length = 273 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 18/210 (8%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 ++ L N+ +F G + Sbjct: 227 PEKAALIPKSSESLELSLKNDEIFYKGAVR 256 >gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104] gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104] Length = 294 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 25/175 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G + A + Sbjct: 71 DWYMDYRNSDGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE- 172 +SVDMG+ L ++F+ R G V +GNPH A E Sbjct: 131 DVSVDMGKAN---TLGSGGKAFEATVGGRRFAG----------LAVDVGNPHLACLDPEL 177 Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 D+L D+A+ + A F +GVN+ + + + +R ERGVG T +C Sbjct: 178 SVDELAALDVAAPVSFDAAQ--FPDGVNVEVLTAPAAGVVHMRVHERGVGETRSC 230 >gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] Length = 290 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 37/244 (15%) Query: 51 LIHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-- 104 ++H D + D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 59 VLHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPR 118 Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + + ++VDMG+ +K+ +G + V + Sbjct: 119 PVTVHHADQTHADVTVDMGK-------------ANKLGPGEAVVGGRR----LSGVAVDV 161 Query: 163 GNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 GNPH + ++ L LA+ + H F EGVN+ + + + +R ERGV Sbjct: 162 GNPH-LACLDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF-------MTGEA 271 G T +CG+ A+ VA+ + ++V++ GG + + D + +GE Sbjct: 221 GETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEI 280 Query: 272 KKEW 275 +EW Sbjct: 281 SEEW 284 >gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695] gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695] Length = 273 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTF-ETIRGILVAKENRDGSISVDMGE-PI 124 N DGS+ CGN RCV F + K+ F R I + E + I ++G I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPN-IIESNLGNYKI 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LD +IP R F G V H+ +++ G PH + FVE+ L S Sbjct: 119 LD--VIPALRC-----EKFFSSGSVLEHI--PTFYLIDTGVPHLVGFVENK---EGLNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] Length = 273 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 20/187 (10%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125 N DGS+ CGN RCV F + K F + + + I ++G IL Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLAS 182 D +IP R ++F N L N P +++ G PH + FV++ L S Sbjct: 120 D--VIPALRC------EKFF---TNDSVLENIPTFYLIDTGVPHLVGFVKNK---EGLNS 165 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 166 LNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSV 248 T + ++ Sbjct: 226 TPKKAAL 232 >gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100] gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100] Length = 249 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILV 107 +++ HD D + + NCDGS+ CGNG R F +K+ + F T G++ Sbjct: 45 VIVPHDRYDFEWEFY----NCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIK 100 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPH 166 + + D I++ KL + + + +DR G + G PH Sbjct: 101 SFVDDD----------IVEIKLSGIKDIKEAFEYKDRIWQG------------CNTGVPH 138 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225 + FV DDL +D+ L K N++ A+V E + +RT+ERGV T AC Sbjct: 139 IVTFV-DDLSEFDIN-----LCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLAC 192 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 G+ A + K + +K L + +F G+ K Sbjct: 193 GTGMGACFYLAYLNQKVKDDILIKPKSNESLYFRLEEEQIFFRGKVK 239 >gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83] Length = 278 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510] gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510] Length = 111 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + A D + I N DGSEV CGN RC+ +++ ++K+ T ET+ GI V K + + Sbjct: 4 KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63 Query: 114 G----SISVDMGEPIL 125 ++VDM P+L Sbjct: 64 NELVEEVTVDMDLPLL 79 >gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] Length = 273 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12] gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12] Length = 272 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N +++ G PH + FV++ + L S Sbjct: 110 ESNLGNYKILDTIPNLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVKNKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 167 NTLELRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNA 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKATL 232 >gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 24/177 (13%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111 A D F+ N DGS + CGNG R +L SR ++ FT T G + + + Sbjct: 68 APTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRVTVHSCDE 127 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + ++V+MG + S M + + V MGNPH V Sbjct: 128 QAAEVTVEMGPAEV------TGVSTASMAGESY-----------AGLGVDMGNPHLAAVV 170 Query: 172 ED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D +F + F GVN+ + + +R +ERGVG T +CG+ Sbjct: 171 PGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETRSCGT 227 >gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99] gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99] Length = 290 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 37/244 (15%) Query: 51 LIHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-- 104 ++H D + D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 59 VLHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPR 118 Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + + ++VDMG+ +K+ +G + V + Sbjct: 119 PVTVHHADQTHADVTVDMGK-------------ANKLGPGEAVVGGRR----LSGVAVDV 161 Query: 163 GNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 GNPH + ++ L LA+ + H F EGVN+ + + + +R ERGV Sbjct: 162 GNPH-LACLDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF-------MTGEA 271 G T +CG+ A+ VA+ + ++V++ GG + + D + +GE Sbjct: 221 GETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEI 280 Query: 272 KKEW 275 +EW Sbjct: 281 SEEW 284 >gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440] gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440] Length = 280 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 53/238 (22%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISV 118 F+ N DGS + CGNG R VR+L + +F T G++ A+ + ++V Sbjct: 67 FMDYWNSDGSVAEMCGNGARVFVRYLLEAGLAVPSGAAFPVATRAGLVRARVEGE-ELAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +M P L I + ++ L L V +GNPH + V L Sbjct: 126 EMRRPRLAGASIAV----------------LDGLALPG-TAVDVGNPHLVCPVPAGL--- 165 Query: 179 DLASFGNLLAKHP-----MFSEGVNLSIARVTSLES-------LDLRTWERGVGLTAACG 226 +LA+ L + P +F GVN+ +T + + +R +ERG T +CG Sbjct: 166 ELAALD--LNRAPEIDPVIFPTGVNVEF--ITPGDPTGGTDGYVRMRVYERGSAETRSCG 221 Query: 227 SAACASVVASGCLHKTNR---AVSVKMLGGGLLIE------WHDNNHVFM-TGEAKKE 274 + ACA VA+ L R V+V + GG L++ W V + TGE E Sbjct: 222 TGACA--VAAVVLRDAGRDTGVVAVDVPGGRLVVTQTAQACWLAGPAVLVATGEVAAE 277 >gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 278 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 35/183 (19%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKEN 111 ++ D F+ N DGS + CGNGMR +L + K K F T G + A + Sbjct: 66 SAADWFMDYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADE 125 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAI 168 R +SV+MGE + G + + F V +GNPH Sbjct: 126 RTADVSVEMGEASV--------------------TGVSTCVLGQTTFAGLGVDVGNPHLA 165 Query: 169 FFV----EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 + +D L + F GVN+ IA ++ +R ERGVG T + Sbjct: 166 CIIPTLTKDQLEALPIQD--GFAVDTEFFPAGVNVEIATELVDGAVYMRVNERGVGETRS 223 Query: 225 CGS 227 CG+ Sbjct: 224 CGT 226 >gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 294 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 25/175 (14%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G + A + Sbjct: 71 DWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE- 172 +SVDMG+ L +F+ R G V +GNPH A E Sbjct: 131 DVSVDMGKAN---TLGGGGEAFEATVGGRRFAG----------LAVDVGNPHLACLDPEL 177 Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 D+L D+A+ + A F +GVN+ + + + +R ERGVG T +C Sbjct: 178 SVDELAALDVAAPVSFDAAQ--FPDGVNIEVLTAPAAGVVHMRVHERGVGETRSC 230 >gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] Length = 319 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 41/251 (16%) Query: 8 FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV-DA--- 62 F K G N +LV D G N T+D + A+ D LI + ++V DA Sbjct: 9 FTKGHGTENDFVLVADPDGVW-NPTADVVAAI-CDRRAGVGGDGLIRAVRSSAVPDAAGT 66 Query: 63 ------FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS------FTFETIRGILVAK 109 F+ N DGS + CGNG+R FL +R+ + F T G+ + Sbjct: 67 APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 DG + D+G W L + D + P R V +GNPH + Sbjct: 127 READGQWTADLGP----WALTGGDDAL-GAGSDALVLVPGLDAVARPALSVDLGNPHTVV 181 Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIA-----------RVTSLESLDLRTWE 216 + D+ L DL + P+ +G N+ + V + + +R E Sbjct: 182 ALPDEAELAAADLTRAPEV---RPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHE 238 Query: 217 RGVGLTAACGS 227 RG G T +CG+ Sbjct: 239 RGSGETRSCGT 249 >gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] Length = 285 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 65/165 (39%), Gaps = 26/165 (15%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFT----FETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG+R + L + ++R + T G DG VDMG Sbjct: 78 NADGSTAEMCGNGIRLFLHVLVTEGLVERTACADGIWVGTRGGPRRVGATADGGYWVDMG 137 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +D F VSMGNPH + D+ DLA Sbjct: 138 ------PARPFGAGTAHLDGASF-----------PGRAVSMGNPHLAVLTDVDVDTLDLA 180 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWERGVGLTAAC 225 + + A +F +GVN+ V + LR ERGVG T +C Sbjct: 181 TAPAVDAA--LFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSC 223 >gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4] gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4] Length = 289 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 33/177 (18%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKENRDG 114 D F+ N DGS + CGNG+R +L T R F + G I+ + + G Sbjct: 71 DWFMDYRNADGSIAEMCGNGVRVFAHYLRSTGLETRDEFVVGSRAGGKPVIVHSADGSAG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG + L S +D F N + +GNPH + V+ Sbjct: 131 EVTVDMG------VVRDLGTSAATIDGKVF-----------NGIGIDVGNPH-LACVD-- 170 Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H AS L L P F GVN+ I ++D+R ERGVG T +C Sbjct: 171 -AHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSC 226 >gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20] Length = 273 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G PH + FV++ L S Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226 >gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] Length = 311 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R +L S +SF + G+ DG + Sbjct: 81 FMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEITRLADG-YA 139 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V++G L ++ RS D M + R + L ++MGNPH + + D Sbjct: 140 VNLGPWGLIFEQEATERSIDSMVKPRGWEQALPAL------SITMGNPHTVVALPDAQML 193 Query: 178 YDLASF-GNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSA 228 +L F ++ P+ V + +E + +R +ERGVG T +CG+ Sbjct: 194 EELDLFQAPEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVGETLSCGTG 250 >gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 214 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 43/196 (21%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97 L + ++ D FI I+ N DGS CGNG R F K + Sbjct: 31 LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 +F T GI+ AK N+D + V +G K+ + +F+++ G L Sbjct: 91 SFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 + G PH + F + +L F +L + N++ ++ L +RT+ER Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183 Query: 218 GV-GLTAACGS--AAC 230 GV T ACG+ AC Sbjct: 184 GVEDETLACGTGMGAC 199 >gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] Length = 324 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 116/327 (35%), Gaps = 76/327 (23%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 AK G GN +V A +A + D + + L D FIR + Sbjct: 12 LAKAHGCGNSFVV-------------ATDADDSHDPSAEEVRALCSQAFGIGADGFIRCV 58 Query: 68 -----------NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 N DGS+ + CGNG+R V L R+ G + R G+ Sbjct: 59 RSGGAWFMDYRNADGSKAEMCGNGVRVFVDHL-----RREGLVRLAPGESLEVLTRGGTR 113 Query: 117 SVDM--------GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--------PFVV 160 +V++ E + + + + R +GP + P V+ Sbjct: 114 TVELVAEAGGGAAEGCGEGGGAAGCGAAEDGAQYRVDMGPASSPARETVKVSVPGIPGVL 173 Query: 161 S-----MGNPHAIFFVED-------DLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTS 206 S M NPH + V+ L D A + A P EG NL + + Sbjct: 174 SGIWVDMPNPHTVVAVDSLAALEGAQLPAVDAARVAPQMRPAYEPEPREGTNLELVVDLT 233 Query: 207 LES-----LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGL---- 255 E L +R ERGVG T ACG+ CA+ VA+ S V + GG + Sbjct: 234 REGDEVGHLRMRVLERGVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDI 293 Query: 256 --LIEWHDNN----HVFMTGEAKKEWE 276 +I+W VF+TG A + E Sbjct: 294 DGVIDWDGPGLTGAPVFLTGPATRVAE 320 >gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] Length = 298 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 41/232 (17%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVD 119 F+ N DGS + CGNG R F + F T G+ + S+ Sbjct: 77 FMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGVKMLS-----SLGAQ 131 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSMGNPHAIFFV 171 G L + ++D + +G + + P V MGNPH + + Sbjct: 132 PG----------LGQHVFRVDMGGWSMGELYAYTVSIPGQPGQAPGTFVDMGNPHVVAVI 181 Query: 172 EDDLYHYDLASFGNLLAKH-----PMFSEGVNLSIARVTSLES------LDLRTWERGVG 220 ED L +L H P G N+ R+ ++ +R +ERG G Sbjct: 182 ED--AQSTLPVIDDLDLTHAPKVEPQLDHGQNVEFVRIDDMDERADQGEATMRVYERGCG 239 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 T +CG+ CA+ + N + + GG L + DN+ V +TG A+ Sbjct: 240 ETLSCGTGLCATAITLRARTGINH-WRITVAGGILDVAVTDND-VQLTGNAE 289 >gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100] Length = 316 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 33/181 (18%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK--------E 110 F+ N DGS + CGNG+R L + F E G + + Sbjct: 101 FMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGGEPKFPIEIGVGTRAGRKIVKIHEAD 160 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + +SVDMG P++ IG N L V MGNPH Sbjct: 161 AQQAKVSVDMGRPVV-------------TGMSTASIGGFNLAGLG----VDMGNPHLAAI 203 Query: 171 VEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + L LA + F GVN+ +A ++ +R ERGVG T +CG+ Sbjct: 204 IPN-LTAEKLAELPIGEKVTWDEEFFPTGVNVEVATPLEDGAVHMRVHERGVGETRSCGT 262 Query: 228 A 228 Sbjct: 263 G 263 >gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977] gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium abscessus] Length = 295 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 50/248 (20%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR--- 112 +S D F+ N DGS + CGNG+R +L S R F ++ G + N Sbjct: 68 SSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPVRINSWSQ 127 Query: 113 -DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 ++VDMG P+ ++ + I R F + + +GNPH Sbjct: 128 LTADVTVDMG-PVKEFGAGEAIVGGRRFSGL-------------------AIDVGNPHLA 167 Query: 167 ---AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---LESLDLRTWERGVG 220 A+ E L D+ + + +F +GVN+ + S ++ +R ERGVG Sbjct: 168 CVDAVLTTE-QLRILDVGA--PVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGVG 224 Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE-------WHDNNHVFMTGEA 271 T +CG+ A+ A+ H R V V + GG + + + + GE Sbjct: 225 ETRSCGTGTVAAAYAA-LRHIGQRTGEVVVNIPGGQVRVTVTGESSFLRGPSMLLADGEI 283 Query: 272 KKEWEGKL 279 EW G + Sbjct: 284 SDEWWGGI 291 >gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 36/181 (19%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF----------ETIRGILVAKE 110 D ++ N DGS Q CGNG+R +L + + F + G A+ Sbjct: 71 DWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESADEFVVGSLAGPRPVVLHGFDPARA 130 Query: 111 NRDGSISVDMGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 ++V+MG+ + RSFD + V +GNPH Sbjct: 131 TT-AEVTVEMGKANQFGAGSAVVGGRSFDGL-------------------AVDVGNPHLA 170 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + DDL D+A+ + +F +GVN+ + + ++ +R ERGVG T +CG Sbjct: 171 CVGITADDLAALDVAA--PVSFDPALFPDGVNVEVLTASVDGAVSMRVHERGVGETRSCG 228 Query: 227 S 227 + Sbjct: 229 T 229 >gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A] Length = 273 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N+ L N P +++ G PH + FV++ L S Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + + N++IA + + E++ L+T+ERGV T ACG+ A + + + T Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51] Length = 273 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 22/212 (10%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTF-ETIRGILVAKENRDGSISVDMGE-PI 124 N DGS+ CGN RCV F + K+ F R I + E + I ++G I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPN-IIESNLGNYQI 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLA 181 LD IP R +F N L N P +++ G PH + FV++ L Sbjct: 119 LD--TIPALRC------KKFF---TNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LN 164 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 S L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 165 SLNTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFY 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 T + ++ L N+ +F G + Sbjct: 225 NTPKKAALIPKSNESLELSLKNDEIFYKGAVR 256 >gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] Length = 289 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 27/174 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D F+ N DGS + CGNG+R +L + R F ++ G +L ++ Sbjct: 71 DWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPVVLHEADDTTA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MG K + + RF + V +GNPH + V+++ Sbjct: 131 DVTVEMG------KAVRCGTGTATVGGRRF-----------SGLAVDVGNPH-LACVDEE 172 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 L LAS + F GVN+ I ++ +R ERGVG T +C Sbjct: 173 LTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSC 226 >gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7] Length = 273 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 14/208 (6%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125 N DGS+ CGN RCV F + K F + + + +I ++G IL Sbjct: 60 NSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYKIL 119 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D IP + D + + +L + G PH + FV++ L + Sbjct: 120 D--TIPALKCKKFFTNDSV-LASIPTFYL-----IDTGVPHLVGFVKNKGLLNSLDTLEL 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 +H N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 172 RTLRHDF---NANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACVFYNTPQ 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 ++ L N+ +F G + Sbjct: 229 NATLIPKSNEFLELSLKNDEIFYKGAVR 256 >gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] Length = 245 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 37/236 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 + K GN ++ + + DAIN + + D +++I Q A + Sbjct: 3 YTKYSASGNDFVIFHTL-IKKDYSQDAINLCNRTEGIGADGLIVIVPNQTADFEWLFY-- 59 Query: 68 NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPIL 125 N DGS+ CGNG R V + + + + F T G + + + DG+I M +P Sbjct: 60 NSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITS--SVDGNIVETQMTKP-- 115 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFG 184 K+ ++ F + +++ G PH I V+D + Y++DL + Sbjct: 116 ------------KIIKEEFEQEGLTW------YLIDTGVPHLITIVDDLEKYNHDLCA-- 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + N++ A++ + +RT+ERGV G T ACG+ A + + L Sbjct: 156 -----KMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANAL 205 >gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32] Length = 273 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G H + FVE+ + L S Sbjct: 110 ESNLGNYQILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVENKEW---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKATL 232 >gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38] gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38] Length = 272 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 20/187 (10%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125 N DGS+ CGN RCV F + K F + + + I ++G IL Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLAS 182 D IP R D L N P +++ G PH + FV++ L + Sbjct: 120 D--TIPALRCKKFFSSDS---------VLENIPMFYLIDTGVPHLVGFVKNKRLLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N+++A + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 169 LELRALRHEF---NANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSV 248 T + ++ Sbjct: 226 TPKKATL 232 >gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] Length = 271 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 65/173 (37%), Gaps = 40/173 (23%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS + CGNG+R R+L + T G+ D VDM Sbjct: 76 FMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSCVGD-EFRVDM 134 Query: 121 G--------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G E I+D + R VSMGNPH + V Sbjct: 135 GPARFEGASEAIVDGRRYAGTR-------------------------VSMGNPHLVCRV- 168 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 DD Y DL + A+ +F GVN+ + +R ERGVG T +C Sbjct: 169 DDPYTLDLHKVPAVDAQ--LFPTGVNVEFI-TGPANHITMRVHERGVGETRSC 218 >gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57] Length = 273 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 18/186 (9%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ CGN RCV F + K+ F L K IS+ + EP + Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183 + + D + R N L N P +++ G PH + FV++ L S Sbjct: 110 ESNLGNYKILDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 167 NTLELRALRHEFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226 Query: 243 NRAVSV 248 + ++ Sbjct: 227 PKKAAL 232 >gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 316 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 74/195 (37%), Gaps = 31/195 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI- 116 F+ N DGS + CGN R L S R +S T T G R G + Sbjct: 79 FMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTV--TRLGDLW 136 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDD 174 +VDMG L +D GP R V M NPH + + ED+ Sbjct: 137 TVDMGPARLTRPEEADDEGWDTTVMVPGLAGP------RAALSVEMPNPHTVVALGEEDE 190 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD-----------LRTWERGVG 220 L A + A P+ G NL + V E +D +R ERGVG Sbjct: 191 LEAAVFAGLTDSAAPVVYDPLPEVGTNLELV-VPLGEEVDPDTQAPVGIARMRVLERGVG 249 Query: 221 LTAACGSAACASVVA 235 T +CG+ CA+ VA Sbjct: 250 ETLSCGTGCCAAAVA 264 >gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 413 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 79/306 (25%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD------AINALSTDDNTHFDQIMLIH- 53 + + V F K GN +++D D++ ++ A A ST D ++++ Sbjct: 10 VAAKTVPFVKYTSCGNNFVIVD--ATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQR 67 Query: 54 -------------DFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRFL------T 89 ++ DA + D R+ +G E CGNG+ C+ FL T Sbjct: 68 SNARTLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVT 127 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP-------ILDWKLIPLARSFDKMD-- 140 + I + DGS V++G P + L PL + D ++ Sbjct: 128 VSNIATEIPLSSPNIISIGSLGYDGSW-VNLGMPRHTPTQLVNRDSLHPLDDTIDVIEEL 186 Query: 141 -----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF------------ 183 RD ++V G PH + F + D +LASF Sbjct: 187 TIQFRRDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPE 246 Query: 184 --------------GNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAAC 225 G+ + +H +F +GV+++ AR+ +L+S+ R +ERG+ T AC Sbjct: 247 DRRRGLGAWLVHRIGSFINSRCRH-IFPDGVSVNFARIHNLDSVSNRCFERGINRETLAC 305 Query: 226 GSAACA 231 + A A Sbjct: 306 STGALA 311 >gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] Length = 289 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 33/177 (18%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D F+ N DGS + CGNG+R +L + R F + G I+ + + G Sbjct: 71 DWFMDYRNADGSIAEMCGNGVRVFAHYLRAAGLESRDEFVVGSRAGGKPVIVHSADGAFG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG + L S +D F N + +GNPH + V+ Sbjct: 131 EVTVDMG------VVRDLGTSAATIDGKVF-----------NGIGIDVGNPH-LACVD-- 170 Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H AS L L P F GVN+ I ++D+R ERGVG T +C Sbjct: 171 -AHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSC 226 >gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv] gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97] gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11] gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987] gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92] gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503] gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17] gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85] gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210] gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207] gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506] gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475] gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium tuberculosis H37Rv] gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium bovis AF2122/97] gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11] gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148] gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 4207] Length = 289 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G E Sbjct: 71 DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG K L + RFH V +GNPH + V+ Sbjct: 131 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 172 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L LA+ + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 173 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228 >gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A] gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] Length = 289 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G E Sbjct: 71 DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG K L + RFH V +GNPH + V+ Sbjct: 131 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 172 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L LA+ + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 173 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228 >gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Mycobacterium Tuberculosis Dapf Length = 290 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G E Sbjct: 72 DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 131 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG K L + RFH V +GNPH + V+ Sbjct: 132 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 173 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L LA+ + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 174 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 229 >gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CDC1551A] Length = 292 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G E Sbjct: 74 DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 133 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG K L + RFH V +GNPH + V+ Sbjct: 134 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 175 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L LA+ + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 176 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231 >gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] Length = 292 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + R F ++ G E Sbjct: 74 DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 133 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG K L + RFH V +GNPH + V+ Sbjct: 134 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 175 Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L LA+ + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 176 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231 >gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411] gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411] gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] Length = 288 Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 62/308 (20%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA-- 62 M++F K G N +V+ N+T D + L+ ++ DA V A Sbjct: 1 MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60 Query: 63 -------------FIRIINCDGSEVQSCGNGMRCVVRFL--------------TSRMKRK 95 F+ N DGS + CGNG+R L +R RK Sbjct: 61 LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGKVTVGEQFGIGTRAGRK 120 Query: 96 SFTFETIRGILVAKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL 154 + G EN++ +I SV+MG P + + +G + L Sbjct: 121 MVEVHELSG-----ENQEHAIVSVEMGAP-------------EVLGVSTAQVGDLKVAGL 162 Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLE--- 208 V MGNPH + V +L +L + F GVNL + +T L+ Sbjct: 163 G----VDMGNPH-LAAVVPNLTALELQKLPIDQQVQFDTEFFPAGVNLEV--LTPLDNAG 215 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFM 267 ++ +R ERGVG T +CG+ A+ V++ + V+V + GG + +E ++ V Sbjct: 216 AVHMRVHERGVGETRSCGTGTVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSVLR 275 Query: 268 TGEAKKEW 275 A W Sbjct: 276 GPSAIVAW 283 >gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] Length = 289 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 31/176 (17%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D F+ N DGS + CGNG+R +L + R F ++ G +L ++ Sbjct: 71 DWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPVVLHEADDTTA 130 Query: 115 SISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++V+MG+ + R+F + V +GNPH + V+ Sbjct: 131 DVTVEMGKAVRCGTGTATVGGRTFSGL-------------------AVDVGNPH-LACVD 170 Query: 173 DDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 ++L LAS + F GVN+ I ++ +R ERGVG T +C Sbjct: 171 EELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSC 226 >gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950] Length = 288 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 33/180 (18%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR-DG 114 A+ D ++ N DGS Q CGNG+R +L + R F ++ G +R DG Sbjct: 68 AADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLEDRDDFVVGSLAGPRPVSVHRVDG 127 Query: 115 S---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAI 168 + ISVDMG+ +GP + + F + +GNPH + Sbjct: 128 TTADISVDMGK--------------------ANTLGPGDAVLGGRRFSGVAIDVGNPH-L 166 Query: 169 FFVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 V+ DL LA+ F +GVN+ I ++ +R ERGVG T +C Sbjct: 167 ACVDPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGETRSC 226 >gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] Length = 182 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%) Query: 77 CGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 CGNG R F K + +F T GI+ AK N+D + V +G K+ + + Sbjct: 2 CGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNT 54 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F+++ + + G PH + F ++ L F +L + Sbjct: 55 FEELGKTWQ--------------LCDTGVPHLVHFCQN------LDEFDTILCQKMRQKY 94 Query: 196 GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 95 NANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGE 154 Query: 255 LLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + N +F G+ K +E + Sbjct: 155 KVGFTYKNEELFFEGKVKYCFEANYNF 181 >gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S] gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S] Length = 289 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 27/174 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDG 114 D F+ N DGS + CGNG+R +L T R F + G + + ++ G Sbjct: 71 DWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPVHVHSADHVHG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG ++ L S V L + +GNPH + V+ D Sbjct: 131 DVTVDMG------RVRELGTS----------TATVGGRVLEG-IGIDVGNPH-LACVDPD 172 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 L LAS A F EGVN+ I ++ +R ERGVG T +C Sbjct: 173 LTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSC 226 >gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152] gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152] Length = 302 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 48/241 (19%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILV-AKENRDG 114 D F+ N DGS + CGNG+R +L + + + + R + V A G Sbjct: 79 DWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPVTVHAAGPTHG 138 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V MGE R+ G + + +GNPH + V+ Sbjct: 139 EVTVAMGE----------VRALGASTATVAGWG-------YSGLGIDVGNPH-LACVDPT 180 Query: 175 LYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLE---SLDLRTWERGVGLTAACG 226 L LA L P +F GVN+ I +T L+ ++D+R +ERGVG T +CG Sbjct: 181 LTAEALAKLD--LTVSPGYDPDLFPHGVNVEI--LTPLDEQRAVDMRVYERGVGETRSCG 236 Query: 227 SAAC----ASVVASGC-LHKTNRAVSVKMLGGGLLI------EWHDNNHVFM-TGEAKKE 274 + A++ A G L + AV+V++ GG + + W V + TG + Sbjct: 237 TGTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVGLEAGSAWLRGPSVLVATGRLTAD 296 Query: 275 W 275 W Sbjct: 297 W 297 >gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] Length = 289 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 27/174 (15%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDG 114 D F+ N DGS + CGNG+R +L T R F + G + + ++ G Sbjct: 71 DWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPVHVHSADHVHG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG ++ L S V L + +GNPH + V+ D Sbjct: 131 DVTVDMG------RVRELGTS----------TATVGGRVLEG-IGIDVGNPH-LACVDPD 172 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 L LAS A F EGVN+ I ++ +R ERGVG T +C Sbjct: 173 LTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSC 226 >gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni] Length = 182 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 29/207 (14%) Query: 77 CGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 CGNG R F K + +F T G++ AK N+D + V +G K+ + + Sbjct: 2 CGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNT 54 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F+++ + + + G PH + F ++ L F +L + Sbjct: 55 FEELGKTWQ--------------LCNTGVPHLVHFCQN------LDEFDTMLCQKMRQKY 94 Query: 196 GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 95 NANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGE 154 Query: 255 LLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + N +F G+ K +E + Sbjct: 155 EVGFAYKNEELFFEGKVKYCFEANYNF 181 >gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2] Length = 329 Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 28/201 (13%) Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF--------ETI 102 + +A + F+ N DGS + CGNG+R L T R+ S +T+ Sbjct: 73 QEQAEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTV 132 Query: 103 RGIL---VAKENRDGSISVDM---GEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLR 155 R +L + K+ D + SV+ G W +I + S D D + + R Sbjct: 133 RTVLNPALGKQTGDATASVEQTLPGSAADSWYMIDMGEWSLD--DSEDVIVSTSGIEVPR 190 Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES------ 209 V GNPH + + + + A + P+ +G N+ + S Sbjct: 191 PGMRVETGNPHTVVALAES-AELESAELRDAPVLDPVPPQGSNVEYIVMEPARSDVAGGE 249 Query: 210 --LDLRTWERGVGLTAACGSA 228 L +R +ERGVG T +CG+ Sbjct: 250 GALRMRVFERGVGETRSCGTG 270 >gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] Length = 247 Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 45/218 (20%) Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R + + + K+ +F+T GI+ A Sbjct: 57 EFYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKAS-------------- 102 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDL 175 +D D + L PF+ G PH + FV D+L Sbjct: 103 ---------------IDNDFVEVALTAPKKLSEPFIEYGFEWSFYDTGVPHLVTFV-DNL 146 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 +DL+ L K+ N++ A + L++RT+ERGV T ACG+ AS Sbjct: 147 SKFDLSVCSELRKKY-----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFY 201 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 K N + V L D ++ G+ K Sbjct: 202 TGVDRFKFNPCLKVNPKSKEDLWLKFDGETIYFKGKVK 239 >gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] Length = 267 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 26/194 (13%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILV 107 ++L ++ +D+++ N DGS CGN R V + +++ ++ +F + GI+ Sbjct: 52 VVLPYESKDSNIAYKWEFYNADGSFAGMCGNASRAVSLYAFHNKLATQNHSFLSGAGIID 111 Query: 108 AK-----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 +++ + ++GE +L ++ + + + H+ +R P +V Sbjct: 112 TSIKEIIDSKHAYVQSNLGEYVLQGNIV---------ENKKGSVYEFEHIIMRIPHLVYF 162 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221 F +L DL +L K+ N++IA + + + T+ERGV + Sbjct: 163 ATSMKEF----NLLSNDLEFLSHLRHKYD-----ANVNIA-IRENDKIYYVTFERGVENI 212 Query: 222 TAACGSAACASVVA 235 T ACG+ ACA V+ Sbjct: 213 TQACGTGACAVYVS 226 >gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 33/223 (14%) Query: 65 RIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAK--EN--RDGSISVD 119 N DGS CGNG R C + + + F T G++ A+ EN + G + + Sbjct: 57 EFYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESE 116 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P ++I FD N ++++ G PH + + + + Sbjct: 117 LTPP----EIIETEIEFDG----------------HNWWLINTGVPHLVRYTD------N 150 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + F A+ + N++I + +L +RT+ERGV T ACG+ A + Sbjct: 151 IKEFDTEEARELRYVYNANVNIMYIED-GNLRVRTYERGVEDETLACGTGMAACFYRAYK 209 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V G L ++ + G KK +E + D+ Sbjct: 210 EGNVQNNIEVYPTSGDTLYLGYNGKTITFKGRVKKTFETEWDV 252 >gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] Length = 302 Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 38/185 (20%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114 D F+ N DGS + CGNG+R FL +R + FT + G + + + Sbjct: 77 DWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGGRPVTVHSHDALSA 136 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++V+MG+ +D FD R D ++G V +GNPH V Sbjct: 137 DVTVEMGQATVD---------FDAAVRIGDDLYVG----------TKVDVGNPHLACVVG 177 Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTA 223 D+L D + L A F G N+ + ++ + +R +ERGVG T Sbjct: 178 DLDVDELAAVDFTAGVRLEAAD--FPHGANVELLTRPAVADDGVLTAHMRVFERGVGETR 235 Query: 224 ACGSA 228 +CG+ Sbjct: 236 SCGTG 240 >gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228] gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228] Length = 249 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 41/245 (16%) Query: 51 LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSF 97 L + ++ D FI I+ N DGS CGNG R F + Sbjct: 31 LCNRYEGIGADGFIVILPHKKYDFEWEFYNNDGSTASMCGNGSRAAAHFAHHINGIKPHM 90 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 F T G++ A + + S+ V +G K+ + +F + + +N Sbjct: 91 AFLTGAGVIKANVD-NNSVEVSLG------KIKNIQDAFSECE--------------KNW 129 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 + G PH + F E +L +DL L K N++ +V + +L +RT+ER Sbjct: 130 QLCDTGVPHLVHFCE-NLDEFDLK-----LCKQMREKYNANVNFVKVENDNTLRVRTFER 183 Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GV T ACG+ A + K + V G L +N +F G+ + +E Sbjct: 184 GVEDETQACGTGMGACFYLAFLNKKIHNQARVIPKSGEELSFKFENEELFFKGKVRYCFE 243 Query: 277 GKLDI 281 + Sbjct: 244 ANYNF 248 >gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] Length = 311 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117 F+ N DGS + CGNG+R V +L + + ET++ G+ +G + Sbjct: 83 FMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVKTVARTEEG-YA 141 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDD 174 +DMG W I + R+ V+ L+ P +SMGNPH + + D Sbjct: 142 IDMGP----WSFI-----HGEAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSD 192 Query: 175 --LYHYDLASFGNLLAKHPM------FSEGVNLSIARVTSLESLDLRTWERGVGLT 222 L DL S + P+ F V+L + + ++ +R ERGVG T Sbjct: 193 GKLDGLDLHSLPQV-NPAPVNGTNVEFVVPVDLDVESGAQVGAIRMRVHERGVGET 247 >gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] Length = 241 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 50/181 (27%) Query: 65 RIINCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + N DGSE CGNG R + +S+MK F T G++ A+ + D Sbjct: 57 QFYNADGSEASMCGNGSRAAALYAYKYDLASSKMK-----FLTGAGVIEAEVDGD----- 106 Query: 119 DMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 I++ +L P FD+ + + G PH + D L Sbjct: 107 -----IVETQLTPYKELGKFDEWE------------------LFDTGVPHLVKL--DKLE 141 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++++ L KH N++IA V L +RT+ERGV T ACG+ CAS + Sbjct: 142 NFNINECRELRYKH-----NANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLK 195 Query: 236 S 236 + Sbjct: 196 A 196 >gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20] gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20] Length = 249 Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 42/261 (16%) Query: 35 INALSTDDNTHFDQIMLIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMR 82 INA D + + L + ++ D FI I+ N DGS CGNG R Sbjct: 16 INASEKKDRSALAK-ELCNRYEGIGADGFIVILPHKKYDFEWEFYNNDGSTASMCGNGSR 74 Query: 83 CVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141 F + F T G++ A + + S+ V +G K+ + +F + + Sbjct: 75 AAAHFAHHINGIKPHMAFLTGAGVIKANVDNN-SVEVSLG------KIKNIQDAFSECE- 126 Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI 201 +N + G PH + F E +L +DL L K N++ Sbjct: 127 -------------KNWQLCDTGVPHLVHFCE-NLDEFDLK-----LCKQMREKYNANVNF 167 Query: 202 ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH 260 +V + +L +RT+ERGV T ACG+ A + K + V G L Sbjct: 168 VKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARVIPKSGEELSFKF 227 Query: 261 DNNHVFMTGEAKKEWEGKLDI 281 +N +F G+ + +E + Sbjct: 228 ENEELFFKGKVRCCFEANYNF 248 >gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] Length = 311 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GI 105 LI + DA F+ N DGS + CGNG+R V +L + + ET++ G+ Sbjct: 73 LIEEHPDAV--WFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGV 130 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSM 162 +G ++DMG W I R+ V+ L+ P +SM Sbjct: 131 KTVARTEEG-YAIDMGP----WSFI-----HGDAAREGGEDCLVSARGLKTPRAGLSISM 180 Query: 163 GNPHAIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDL 212 GNPH + + E L DL S + +P G N+ L+ ++ + Sbjct: 181 GNPHTVVMLGSEGKLDGLDLHSLPQV---NPAPVNGTNVEFVVPVDLDVESGAHVGAIRM 237 Query: 213 RTWERGVGLT 222 R ERGVG T Sbjct: 238 RVHERGVGET 247 >gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] Length = 272 Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 42/245 (17%) Query: 49 IMLIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGI- 105 ++L D +D+ A+ N DGS+ + CGN R + + + + +F + GI Sbjct: 48 LLLGQDSKDSKKYAYEWEFYNADGSKAKMCGNASRSIGHYAFVEGIAPRKHSFLSQAGII 107 Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-- 162 ++ E+ + D+G +KL+ H+ NP+ V Sbjct: 108 GIIIDESDANLVQSDLGA----YKLVE------------------EHIVESNPYGVKAWA 145 Query: 163 ----GNPHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR-TWE 216 G PH + FV D + Y F L + ++ VNL+ +S +S L T+E Sbjct: 146 LLDSGVPHLVGFVNDKKMLTYSKDEFLQTLREK--YNANVNLAYIDESSDKSRILYMTYE 203 Query: 217 RGV-GLTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK- 273 RGV +T ACG+ A A + L +A+ + L ++ +N H+ G+ ++ Sbjct: 204 RGVEDITQACGTGAAAVFAMALRLGLCGKKALLIPPSNEILELQMTENQHILFKGKVQRI 263 Query: 274 ---EW 275 EW Sbjct: 264 AICEW 268 >gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] Length = 297 Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISV 118 F+ N DGS Q CGNG+R V L + R + R + G +V Sbjct: 72 FMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTSGGYAV 131 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFH--IGPVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175 DMG P + + ++ R+R + L + P V + MGNPH + + + Sbjct: 132 DMG---------PWSFTRGELARERGSDCVVTAAGLTVPRPGVSIGMGNPHTVVVLSEG- 181 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARV-----TSLESLDLRTWERGVGLT 222 D A P+ +G N+ T L L++R ERGVG T Sbjct: 182 EKLDTLDLHTAPAVDPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGET 233 >gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] Length = 290 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 29/176 (16%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI--LVAKENRDGS 115 F+ N DGS + CGNG R +L SR + F T G+ +VA Sbjct: 70 FMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMVAVPR---G 126 Query: 116 ISVDMGEPILDWKLIPLA----RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +VD+G+ W+L R D + + P+ L L +GNPH + + Sbjct: 127 WAVDLGQ----WRLARAEEAERRGMDSVVQVHGSPDPLPALSL------DLGNPHTVVAL 176 Query: 172 EDDLYHYDLASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 ++ L++ A H P +G N+ + +R ERG G T +C Sbjct: 177 PPSVH---LSALDLSDAPHIDPHPEQGSNVEFVHAIEHAHIGMRVHERGSGETRSC 229 >gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group] gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group] Length = 68 Score = 41.6 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 VG T ACG+ ACA VVA+ + R V + GG L IEW D+NH++MTG A+ + G Sbjct: 5 VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64 >gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] Length = 249 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 42/185 (22%) Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN 111 HDF+ N DGS CGNG R + + S F T G++ A Sbjct: 53 HDFE-------WEFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVE 105 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAI 168 D + D+ P++ VN + + +++ G PH I Sbjct: 106 GD-MVQSDLTPPVI-----------------------VNQEIVESGMKWWLIDTGVPHLI 141 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGS 227 F + D+ H+++ LA+ N++IA + +L +RT+ERGV T ACG+ Sbjct: 142 TF-DADIEHFNID-----LARTLRHRYNANVNIASINLDGTLRVRTYERGVEDETLACGT 195 Query: 228 AACAS 232 AS Sbjct: 196 GMAAS 200 >gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] Length = 290 Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 46/246 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIH---DFQDASV- 60 +DF K G N +++ G ++T + AL D ++ I D DA V Sbjct: 4 IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63 Query: 61 ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---I 105 D F+ N DGS + CGNG+R LT S + F + G + Sbjct: 64 DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASSLVPGPEFVVGSRAGGRPV 123 Query: 106 LVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMG 163 +V + + + +SV MG + S +D RD I V +G Sbjct: 124 VVHHADPEAADVSVAMGPATV------FGSSSAGVDGRDLAGI------------AVDVG 165 Query: 164 NPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 NPH V DL D+AS + H +F G N+ + ++ +R ERG Sbjct: 166 NPHLACVVPGLTAADLGGLDVASPPSF--DHGLFPHGTNVEVITPLVDGAVHMRVHERGS 223 Query: 220 GLTAAC 225 G T +C Sbjct: 224 GETRSC 229 >gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] Length = 281 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 30/180 (16%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENR 112 S D F+ N DGS + CGNG R +L S + +FT T G + + + Sbjct: 69 SADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQVTVHSCDAT 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 S++V+MG ++ ++ + +G ++ L V MGNPH + Sbjct: 129 AASVTVEMGP----ARVTGVSTA---------SVGGESYAGLG----VDMGNPHLAAVIP 171 Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + L DL + + F GVN + + +R +ERGVG T +CG+ Sbjct: 172 GLEPEALAAKDLTA---PVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGTG 228 >gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] Length = 307 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 47/248 (18%) Query: 6 VDFAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-----AS 59 V F+K G GN IL+ D G HD + + A D + ++ A Sbjct: 12 VSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGTAV 71 Query: 60 VDA------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108 +DA F+ N DGS + CGNG+R V+FL + T G+ + Sbjct: 72 LDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVKLV 131 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167 + G SVDMG+ WK + ++ + DR + N L + P + ++ GN H Sbjct: 132 RRTAAG-FSVDMGQ----WKFT-MPQTAE--DRGVDSLVTANGLDVARPALSINTGNAHT 183 Query: 168 IFFV-------EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRT 214 + + E DL+ + P+ G N+ A V + + +R Sbjct: 184 LVALAHRAELDELDLHRAPIVD--------PVPEHGSNVEFALPHDPLVVGGIAEISMRV 235 Query: 215 WERGVGLT 222 +ERGVG T Sbjct: 236 FERGVGET 243 >gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS] gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS] Length = 293 Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 71 DWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGP------------- 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFV---------VSMGNP 165 P++ FD R R + G VN L + V + +GNP Sbjct: 118 ---RPVV-------LHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNP 167 Query: 166 HAIFFVEDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H + V+ L +LA+ ++ A F +GVN+ + ++ +R ERGVG Sbjct: 168 H-LACVDTTLTEAELAAL-DVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGE 225 Query: 222 TAACGSA 228 T +CG+ Sbjct: 226 TRSCGTG 232 >gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS] gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS] Length = 313 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 44/186 (23%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 91 DWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGP------------- 137 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFV---------VSMGNP 165 P++ FD R R + G VN L + V + +GNP Sbjct: 138 ---RPVV-------LHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNP 187 Query: 166 HAIFFVEDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 H + V+ L +LA+ ++ A F +GVN+ + ++ +R ERGVG Sbjct: 188 H-LACVDTTLTEAELAAL-DVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGE 245 Query: 222 TAACGS 227 T +CG+ Sbjct: 246 TRSCGT 251 >gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] Length = 309 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 36/236 (15%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R V FL + + T G+L + D + Sbjct: 76 FMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIETD-RYA 134 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175 VDMG L FD +G R +++ NPH + +ED L Sbjct: 135 VDMGRWSAPGGAEALEAGFDA------SVGVAGLDSPRPGLRLALPNPHVVVALEDVAQL 188 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-----------------LRTWERG 218 DL + P+ G N+ + + D +R ERG Sbjct: 189 ESIDLTKPPRV---DPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRMRVHERG 245 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAK 272 VG T +CG+ ACA+ +A V + GG L + +HV ++G A+ Sbjct: 246 VGETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGPAE 301 >gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] Length = 281 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 30/179 (16%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRD 113 S D F+ N DGS + CGNG R +L S + +FT T G + V N Sbjct: 69 SADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQVTVHSCNAT 128 Query: 114 G-SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 S++V+MG + + +G V MGNPH + Sbjct: 129 AASVTVEMGP-----ARVTGVSTASVAGESYAGLG------------VDMGNPHLAAVIP 171 Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L DL + + F GVN + + +R +ERGVG T +CG+ Sbjct: 172 GLEPEALAAKDLTA---PVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227 >gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] Length = 292 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 33/183 (18%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111 A+ D F+ N DGS + CGNG+R +L + + F + G ++ + Sbjct: 71 AAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPVVVHGYDA 130 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFF 170 G ++V MG PI D L S +D F +G + +GNPH + Sbjct: 131 THGDVTVAMG-PIKD-----LGTSSATIDGRVFAGVG------------IDVGNPH-LAC 171 Query: 171 VEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 V++ + L++ L+ P F GVN+ I + +R ERGVG T +C Sbjct: 172 VDEHVTAEVLSALD--LSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSC 229 Query: 226 GSA 228 G+ Sbjct: 230 GTG 232 >gi|323524689|ref|YP_004226842.1| sodium/hydrogen exchanger [Burkholderia sp. CCGE1001] gi|323381691|gb|ADX53782.1| sodium/hydrogen exchanger [Burkholderia sp. CCGE1001] Length = 667 Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 25/120 (20%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PHA+ V D + +LA FG + MFS G+ S+A++ S+ L G+GL Sbjct: 41 GPHALGLVPDSVGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92 Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 G+ A A S+ G L ++ A+ KML L IE ++F Sbjct: 93 VLGTIAVAVTLGFVFERWVHIKWQASIALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152 >gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] Length = 321 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 58/244 (23%), Positives = 91/244 (37%), Gaps = 36/244 (14%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI-LVAKENRDGSI- 116 F+ N DGS + CGNG+R F S + T G+ V KE + Sbjct: 88 FMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTELALGTRAGVKRVRKETGPDGVP 147 Query: 117 --SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--E 172 +VD+G W+L A + + R V +GNPH + + Sbjct: 148 WYAVDLGP----WRLPGGAEAAAAGADAAVAV--RGWAAPRPALSVDLGNPHTVVALGST 201 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----------LDLRTWERGVGLT 222 D+L DL + G N+ + V LE + +R ERGVG T Sbjct: 202 DELARIDLTQAPQVAPP---PPHGTNVEL--VVPLEETTSGAETAGRVRMRVHERGVGET 256 Query: 223 AACGSAACASVVASGCLHKTNRAVS-----VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +CG+ A A+ +A V++ GG L + + H + G A+ + G Sbjct: 257 QSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVRVLTDGHAELAGPAQLVFSG 316 Query: 278 KLDI 281 + + Sbjct: 317 ETTL 320 >gi|186475101|ref|YP_001856571.1| sodium/hydrogen exchanger [Burkholderia phymatum STM815] gi|184191560|gb|ACC69525.1| sodium/hydrogen exchanger [Burkholderia phymatum STM815] Length = 667 Score = 39.3 bits (90), Expect = 0.64, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 25/120 (20%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PHA V D + +LA FG + MFS G+ S+A++ S+ L G+GL Sbjct: 41 GPHAFGIVPDSVGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92 Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 G+ A A SV G L ++ A+ KML L IE ++F Sbjct: 93 VLGTIAIAVSLGFVFERWVHISWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152 >gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] Length = 265 Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 35/201 (17%) Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122 N DGS CGN RCV + + + TF + G++ + + G + ++G Sbjct: 60 NADGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGA 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180 P + + + + G + HL + G PH + FV+ + + + Sbjct: 120 P----------KRLESLQLE----GQIWHL-------LDTGVPHLVHFVDHPNKIPTHKT 158 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 L A+ F VN A + ++ L T+ERGV +T ACG+ A+V A Sbjct: 159 PQMQTLRAR---FDANVNF--AYIQDPRTIKLATYERGVEDITLACGTGM-AAVFACAYY 212 Query: 240 HKTNRAVSVKMLGGGLLIEWH 260 + +V + G + W+ Sbjct: 213 QHNHNPQAVLIPPSGEALNWY 233 >gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 42/188 (22%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGI-----LVAKENRDG 114 F+ N DGS + CGNG R +L + F+ T GI + + D Sbjct: 85 FMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSPKFSIGTRAGIKRLTVVNPAQTTDS 144 Query: 115 S--ISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFV 171 S I+VDMG+ + + +S DR RF +G + +GNPH + Sbjct: 145 SARIAVDMGQVGI------IGQSVAAFDRQRFAGVG------------IDVGNPHLACVI 186 Query: 172 ED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVG 220 D D +L + F G N+ + +T L + D +R ERG G Sbjct: 187 PDLDDAGLRELPLHLKPVLDEEFFPHGANVEV--LTPLRADDSRDGDGTVSMRVHERGSG 244 Query: 221 LTAACGSA 228 T +CG+ Sbjct: 245 ETRSCGTG 252 >gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 262 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 112/289 (38%), Gaps = 44/289 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + L +DN H +Q+ I D Sbjct: 3 LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKDNH--------- 53 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE--- 122 + G E CGN R L R K F+ + I I + E+ ++ V G+ Sbjct: 54 -LQMMGGEF--CGNASRSFASLLAFR--DKDFSKQKIYKITCSGEDEILAVDVREGQTEN 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDLYHYD 179 L +P +S +++ D + +G V G H IF V ++D + Sbjct: 109 SFLAKIKMPKFKSLEELKIDNYKLGLVKF----------SGIDHFIFDVAENKEDNFEKV 158 Query: 180 LASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + S N L+ MF + NLS+ ++ ++ +E +C S A Sbjct: 159 IDSVKNYLSDKDFSAFGIMFFDRQNLSMKPYVYVKDIESGIFEN------SCASGTTALG 212 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +RA ++ G L +N+ +++ G + EGK+ I+ Sbjct: 213 YYLKKYKNLDRAKIIQ--PNGWLEYIIENDEIYIDGSVEIVAEGKVYIQ 259 >gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] Length = 258 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 44/288 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + L +DN H +Q+ I D Sbjct: 3 LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKDNH--------- 53 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE--- 122 + G E CGN R L R K+F+ + I I + E+ ++ V G+ Sbjct: 54 -LQMMGGEF--CGNASRAFASLLAFR--DKTFSKQKIYKITCSGEDEVLAVDVREGQTEN 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDLYHYD 179 L +P +S +++ D + +G V G H IF + ++D + Sbjct: 109 SFLAKIKMPKFKSLEELKIDNYKLGLVKF----------SGIGHFIFDIAKNKEDNFEKV 158 Query: 180 LASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + S N L+ MF + NLS+ ++ ++ +E +C S A Sbjct: 159 IDSVKNYLSDKDFSAFGIMFFDRENLSMKPYVYVKEVESGIFEN------SCASGTTALG 212 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +RA ++ G L +N+ +++ G + EGK+ I Sbjct: 213 YYLKKYKNLDRAKIIQ--PNGWLEYIIENDEIYIDGSVEIVAEGKVYI 258 >gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] Length = 289 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 31/182 (17%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111 A+ D F+ N DGS + CGNG+R +L + + F + G ++ + Sbjct: 68 AAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPVVVHGYDA 127 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 G ++V MG + L S +D F + +GNPH + V Sbjct: 128 THGDVTVAMG------TIKDLGTSSATIDGRVF-----------AGVGIDVGNPH-LACV 169 Query: 172 EDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 ++ + L+S L+ P F GVN+ I + +R ERGVG T +CG Sbjct: 170 DEHVTPEVLSSLD--LSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCG 227 Query: 227 SA 228 + Sbjct: 228 TG 229 >gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] Length = 124 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223 PH + FV++ + L + +H N++IA + + E++ L+T+ERGV T Sbjct: 2 PHLVGFVKNKEWLNSLNTLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTL 58 Query: 224 ACGSAACASVVASGCLHKTNRAVSV 248 ACG+ A +A+ + T + ++ Sbjct: 59 ACGTGMAAVFIAARIFYNTPKKAAL 83 >gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN] gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae] gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae] gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] Length = 296 Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 23/174 (13%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK----ENRDG 114 D ++ N DGS Q CGNG+R +L + F ++ G + + + Sbjct: 71 DWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRLVNVHHVDELNA 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG+ L P +F R G V +GNPH + ++ Sbjct: 131 DVTVDMGKANLLGSGGP---AFAVTVGGRRFSG----------VAVDVGNPH-LACMDPQ 176 Query: 175 LYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 L +LA+ H F +GVN+ + + +R ERGVG T +C Sbjct: 177 LSLEELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVGETRSC 230 >gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] Length = 307 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 76/206 (36%), Gaps = 54/206 (26%) Query: 61 DAFIRII-----------NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 D FIR + N DGS+ + CGNG+R V L R+ + G + Sbjct: 52 DGFIRAVQRDGSWFMDYRNADGSKAEMCGNGVRVFVDHL-----RREGLVDLPLGATLDV 106 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLF-LRNPFV----- 159 R G ++ PL R +G P + +R P V Sbjct: 107 VTRGGIK-----------RVTPLEEDGGHGAHYRVDMGAAASPASETIEVRIPGVDGVLG 155 Query: 160 ---VSMGNPHAIFFVEDD-------LYHYDLASF--GNLLAKHPMFSEGVNLSI-----A 202 V M NPH + + D+ L D++ G + P + G NL + Sbjct: 156 GLWVDMPNPHTVVELADEETLRGVTLPTIDVSRLAPGQRPSYAPEPASGTNLELVVDLTT 215 Query: 203 RVTSLESLDLRTWERGVGLTAACGSA 228 +SL + +R ERGVG T ACG+ Sbjct: 216 PGSSLGHIAMRVLERGVGETQACGTG 241 >gi|187922609|ref|YP_001894251.1| sodium/hydrogen exchanger [Burkholderia phytofirmans PsJN] gi|187713803|gb|ACD15027.1| sodium/hydrogen exchanger [Burkholderia phytofirmans PsJN] Length = 667 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PHA + D +LA FG + MFS G+ S+A++ S+ L G+GL Sbjct: 41 GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92 Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 G+ A A SV G L ++ A+ KML L IE ++F Sbjct: 93 VIGTIAVAVSLGFVLERWVHIRWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152 >gi|91781730|ref|YP_556936.1| putative glutathione-regulated potassium efflux system protein [Burkholderia xenovorans LB400] gi|91685684|gb|ABE28884.1| Kef-type potassium/proton antiporter, CPA2 family [Burkholderia xenovorans LB400] Length = 666 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PHA + D +LA FG + MFS G+ S+A++ S+ L G+GL Sbjct: 41 GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92 Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 G+ A A SV G L ++ A+ KML L IE ++F Sbjct: 93 VLGTIAVAVTLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152 >gi|296161546|ref|ZP_06844351.1| sodium/hydrogen exchanger [Burkholderia sp. Ch1-1] gi|295888190|gb|EFG68003.1| sodium/hydrogen exchanger [Burkholderia sp. Ch1-1] Length = 666 Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PHA + D +LA FG + MFS G+ S+A++ S+ L G+GL Sbjct: 41 GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92 Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 G+ A A SV G L ++ A+ KML L IE ++F Sbjct: 93 VLGTIAVAVTLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152 >gi|209521312|ref|ZP_03270029.1| sodium/hydrogen exchanger [Burkholderia sp. H160] gi|209498258|gb|EDZ98396.1| sodium/hydrogen exchanger [Burkholderia sp. H160] Length = 688 Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 31/123 (25%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVG 220 PHA + D +LA FG + MFS G+ S+A+ LRT R G+G Sbjct: 64 GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAK--------LRTMRRLVFGLG 112 Query: 221 LTAACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263 L G+ A A SV G L ++ A+ KML L IE Sbjct: 113 LLQVIGTVAVAVSLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGR 172 Query: 264 HVF 266 ++F Sbjct: 173 NIF 175 >gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 65 Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 11/70 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59 + F+KM G+GN +V+D G N+ T + I L+ N H FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55 Query: 60 VDAFIRIINC 69 +D RI NC Sbjct: 56 LDFHYRIFNC 65 >gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 179 Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 15/143 (10%) Query: 139 MDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 +D D + L PF+ G PH + FV D+L +DL+ L K+ Sbjct: 35 IDNDFVEVALXAPKXLSEPFIEYGFEWSFYDTGVPHLVTFV-DNLSKFDLSVCSELRKKY 93 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249 N++ A + L++RT+ERGV T ACG+ AS K N + V Sbjct: 94 -----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNPCLKVN 148 Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272 L D ++ G+ K Sbjct: 149 PKSKEDLWLKFDGETIYFKGKVK 171 >gi|255953555|ref|XP_002567530.1| Pc21g04840 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589241|emb|CAP95381.1| Pc21g04840 [Penicillium chrysogenum Wisconsin 54-1255] Length = 2218 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 127 WKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+L ARS + + +DRF + +H NP V NP +F+++D+ H+D A F N Sbjct: 42 WELCTRARSGWSPIPKDRFSVEAFHH---PNPSKVGSFNPKGGYFLDEDIAHFD-APFFN 97 Query: 186 LLAKH 190 L + Sbjct: 98 LTVQE 102 >gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478] Length = 290 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 35/235 (14%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111 + D ++ N DGS Q CGNG+R +L + +R F ++ G + + + Sbjct: 68 GAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRPVTVHSVDA 127 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-FVVSMGNPH-AIF 169 + ++VDMG+ +R G R P V +GNPH A Sbjct: 128 SNADVTVDMGK------------------ANRIGTGTAVVGGRRFPGLAVDVGNPHLACL 169 Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GS 227 + ++ P F +GVN+ + + +R ERGVG T +C Sbjct: 170 DPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGETRSCGTG 229 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-------VFMTGEAKKEW 275 A+V A ++V++ GG + + D + TGE EW Sbjct: 230 TVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATSFLRGPSVLVATGEVSGEW 284 >gi|45658224|ref|YP_002310.1| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601466|gb|AAS70947.1| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 287 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 193 FSEGVNLSIARV--TSLESLDLRTWERGVGLTAACGSAACAS 232 FSEG+ I+RV +L+ LD +TWE+ + T C CA+ Sbjct: 71 FSEGIRNEISRVFGLNLKDLDFQTWEKSLSTTKRCLDVGCAA 112 >gi|294827850|ref|NP_711531.2| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|293385695|gb|AAN48549.2| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 287 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 193 FSEGVNLSIARV--TSLESLDLRTWERGVGLTAACGSAACAS 232 FSEG+ I+RV +L+ LD +TWE+ + T C CA+ Sbjct: 71 FSEGIRNEISRVFGLNLKDLDFQTWEKSLSTTKRCLDVGCAA 112 >gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC 43553] Length = 363 Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%) Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG-VGLTAACGSAACAS 232 + Y + LA++ +L PM E + DLR W++G G+ AA Sbjct: 174 EFYQHLLAAYPSLSMHQPMKPETAAVPWRDAPD----DLRAWQQGKTGIPIV--DAAMRQ 227 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268 ++A G +H R V+ L LLI+W FM Sbjct: 228 LLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAWFMA 263 >gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] Length = 45 Score = 36.6 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 N V V +LGG L+IEW+ H ++MTGEA ++G Sbjct: 6 NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 41 >gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8] Length = 472 Score = 35.4 bits (80), Expect = 9.0, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 183 FGNLLAKHPMFS--EGVNLSIARVTSLESLD-LRTWERG-VGLTAACGSAACASVVASGC 238 + +LLA HP S + + A V ++ D LR W++G G+ AA ++A G Sbjct: 286 YQHLLAAHPSLSMHQPMKPETAAVPWRDAPDDLRAWQQGQTGIPIV--DAAMRQLLALGW 343 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 +H R V+ L LLI+W FM +G L G W Sbjct: 344 MHNRLRMVTAMFLSKNLLIDWRLGEAWFMAQLV----DGDLAANNGGW 387 >gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis PB1/+] gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+] Length = 487 Score = 35.4 bits (80), Expect = 9.6, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 150 NHLFLRNPFVVSMGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205 N L+ +P ++ + A ++ + + Y + L ++ L HP L R Sbjct: 255 NRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGLVWNRSE 314 Query: 206 SLESLDLRTWERG-VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264 S L+ W++G G AA + +G +H R +S L LLI+W Sbjct: 315 S----QLKAWQQGQTGYPIV--DAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGER 368 Query: 265 VFMTGEAKKEWEGKLDIKTGKW 286 FM+ +G L G W Sbjct: 369 YFMSQLV----DGDLAANNGGW 386 Searching..................................................done Results from round 2 >gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV Sbjct: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM Sbjct: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 >gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200] Length = 275 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ LIP K + + FL SMGNPH + VE D+ +A Sbjct: 121 VPILEPSLIPFKA---KKPEKTYLLQTAQQTFLCG--AASMGNPHCVLDVE-DVASAAVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4] gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4] Length = 279 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 6/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ S+ + ++ T G + + RDGS++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP + + VSMGNPH + V DD+ + D+ Sbjct: 121 IPVLEPSRIPFNAKKAEKTY-LLQADMPEGMQTFLCGAVSMGNPHCVLEV-DDVANADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+LL KH F +GVN+ +V + LR +ERG T ACGS ACA+V K Sbjct: 179 RIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGK 238 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 R V V + GG L I W + ++MTG A+ ++G++ Sbjct: 239 LARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQIQ 278 >gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 276 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PI + IP+ ++ +I L SMGNPH + V D++ D+ Sbjct: 121 GVPIFEPNKIPMKAK----QAEKTYILRAGDQTLFCGAA-SMGNPHCVTVV-DNVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + +FMTG A ++G+ ++ Sbjct: 235 LLDENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276 >gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34] gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34] Length = 276 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PI + IP+ ++ +I L SMGNPH + V D++ D+ Sbjct: 121 GGPIFEPSKIPMKAK----QAEKTYILRAGEQTLFCGAA-SMGNPHCVTVV-DNVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + +FMTG A ++G+ Sbjct: 235 LLDENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010] gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010] Length = 281 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +VID +TS I LS DQ++L+ Q A D Sbjct: 1 MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + + ET G++ DGS++VDMG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +PI + IP + + ++ ++ + +SMGNPHA+ V DD+ + Sbjct: 121 KPIFEPAKIPF-----QAEEATTYMLTIDEHGKKEIAALSMGNPHAVMLV-DDVTVASVL 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F E VN ++ +S+ LR +ERG G T+ACG+ ACA+VV+ Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 N V+V + GG L I W D + V+MTG A+ ++G++ Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273 >gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 274 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V K + D ++V+MGE Sbjct: 61 RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP F + ++ +I + VSMGNPH + V DD+ + + Sbjct: 121 PIFEPSKIP----FKAVKAEKTYIMRAAEHTILCG-AVSMGNPHCVLQV-DDVETALVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 IGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W +N +FMTG A ++G + + Sbjct: 235 DENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDGFIHL 274 >gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] Length = 276 Score = 365 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + D + L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PI D IP F ++ +I + SMGNPH + V DD+ D+ Sbjct: 121 GVPIFDPAKIP----FRANQAEKTYILRAGDQTVFCGAA-SMGNPHCVTVV-DDVLTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN+ +V S + LR +ERG G T ACGS ACA+V Sbjct: 175 ETLGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + V+V + GG L I W+ N ++FMTG ++G++ Sbjct: 235 LLDEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274 >gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] Length = 279 Score = 365 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ + F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 1 MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DGSEV CGNG RC RF L +K T T G ++ + + Sbjct: 61 QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + IP +A F+K R I V VVSMGNPH + V DD+ Sbjct: 121 VNMGEPIWEPAKIPFVANKFEKNYILRTDIQTV------LCGVVSMGNPHCVVQV-DDIK 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 TANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L IEW +FMTGEA ++G + + Sbjct: 234 IMQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDGVIRL 279 >gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3] gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3] Length = 275 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+LD IP K + + FL SMGNPH + VE D+ + ++A Sbjct: 121 VPVLDPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185] gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195] gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223] gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185] gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195] gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223] gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678] Length = 275 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ IP K + + FL SMGNPH + VE D+ +A Sbjct: 121 VPILEPSQIPFKA---KKPEKTYLLQTPMQTFLCG--AASMGNPHCVLDVE-DVASASVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L KH F GVN+ +V + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 235 LGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] Length = 283 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F+KM G+GN +VID + I A + FDQ++L+ VD Sbjct: 2 TTLKFSKMHGLGNDFMVIDGTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F++ +++ ET RGI+ N +G I+V+M Sbjct: 62 RYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + +P + ++ +I VN L ++SMGNPHA+ VED + Sbjct: 122 GQPQFAPQDVPFVLRSGEQAGEKSYI-VVNELDSAQMSLLSMGNPHAVMLVEDT-ASAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G L HP F VN+ +V + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 AEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVVSGVRWG 239 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V+MTG A +EG+L Sbjct: 240 LLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280 >gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 276 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H + + + L+ FDQ++++ D Sbjct: 1 MLIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ +K+ ET +GI+ N+DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + V + VSMGNPH + V DD+ + Sbjct: 121 GAPRLAPADIPFVAETQEAIY-PIEVNGVMYEI----SAVSMGNPHGVLVV-DDVNKAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L HP F E N+ +V LR +ERG G T ACG+ ACA+VVA Sbjct: 175 HKLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V +K+ GG L I W H V MTG A + ++G++ I Sbjct: 235 LLDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276 >gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7] gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7] Length = 275 Score = 364 bits (935), Expect = 8e-99, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+LD IP K + + FL SMGNPH + VE D+ + ++A Sbjct: 121 VPVLDPSQIPFKA---KKAEKTYLLQTSQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] Length = 276 Score = 364 bits (935), Expect = 8e-99, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F+KM G+GN +VID H ++T + I L FDQ++L+ + D Sbjct: 1 MKLKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + + ET +G++V + DG+++VDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + G + VVSMGNPHA+ V D+ + + Sbjct: 121 GVPRFKPVEIPFVAAEEALTYPLDAAGRQ-----CDISVVSMGNPHAVQVVA-DVDTFPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + HP F E VN ++ S E + LR +ERG G T ACG+ ACA+VVA Sbjct: 175 AELGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V GG L I W V MTG A + G++ + Sbjct: 235 LLDHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276 >gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2] Length = 276 Score = 364 bits (935), Expect = 9e-99, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 146/282 (51%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 V F+KM G+GN +VID + + D I L+ + FDQ++++ D D Sbjct: 1 MQVQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IPL + ++ +I VN L VSMGNPH + VE D+ + Sbjct: 121 GKPEFEPAKIPLKANK----QENTYILRVNDKTLFYG-AVSMGNPHCVMEVE-DVDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ ++ F EGVN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 KEIGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K ++ V V + GG L I W ++V MTG A ++G +++ Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276 >gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9] gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum SS9] Length = 276 Score = 364 bits (935), Expect = 9e-99, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + AI L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F ++ +I V + VSMGNPH + V DDL D+ Sbjct: 121 GVPEFEPSKIP----FRAKQTEKTYIMRVGERTIFCGT-VSMGNPHCVTVV-DDLELTDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 175 DTLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG ++G++ Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] Length = 276 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 1 MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ + + T G L +DG ++V+M Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IPL S ++ + I H VSMGNPH + V DD+ + Sbjct: 121 GHPNFEPSKIPLKASKREL---TYIIRAEEHTV--FSGAVSMGNPHCVIEV-DDITTAQV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V Sbjct: 175 DVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQS 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + AV V + GG L I W H V MTG A+ ++G++ + Sbjct: 235 KLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126] Length = 276 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 146/282 (51%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 V F+KM G+GN +VID + + + I L+ + FDQ++++ D D Sbjct: 1 MQVQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IPL + ++ +I V L SMGNPH + V DD+ ++ Sbjct: 121 GKPEFEPANIPLKANK----QENTYILRVGESTLFIGSA-SMGNPHCVMEV-DDVDTANV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ KH F EGVN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 AEIGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K + V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 235 KLGKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1] gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1] Length = 275 Score = 363 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP K + + FL SMGNPH + VE D+ + ++A Sbjct: 121 VPVLEPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W + ++MTG A+ ++G++ + Sbjct: 235 LDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] Length = 276 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN +VID +T+ + ++ DQ++L+ ++D Sbjct: 1 MRIAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ R + + +T GI+ + DG I+VDM Sbjct: 61 GYRIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP K+D + + VVS+GNPH + V + + Sbjct: 121 GVPRFAPQQIPF-----KVDHEADYYSLELDGQQLEIGVVSLGNPHCVLRVP-AVDAAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+VV Sbjct: 175 AHWGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIGKRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V+M+G A+ +EG D+ Sbjct: 235 WLSGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276 >gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345] gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345] Length = 278 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 10/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 S ++ F KM G+GN +V+D + + D I L+ FDQ++L+ D +D Sbjct: 2 SILIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++V+ Sbjct: 62 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L+ IP K+++ + VSMGNPH + VE D+ D Sbjct: 122 MGIPALEPGKIPFTAK--KVEKTYLLMAS---SGTYLCGAVSMGNPHCVIEVE-DVAATD 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 176 VDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGILQ 235 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K +R V V + GG L+I W + ++MTG A+ ++G++ Sbjct: 236 GKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276 >gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893] gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893] Length = 327 Score = 362 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 143/294 (48%), Gaps = 10/294 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 Q M++F KM G+GN +V+D + + I L+ FDQ++++ V Sbjct: 14 QGPMLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDV 73 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + +K +T +G++ + R G ++V Sbjct: 74 DFRYRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+ IP A K D +G VSMGNPH + V DD+ Sbjct: 134 DMGVPELNPPAIPFAADRRK-DVYTVELGG----DTVELSAVSMGNPHGVLLV-DDVDTA 187 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G L HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 188 PVGEYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVAGCL 247 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 + V V++ GG L+IEW V M G +EG+L + + ++ + Sbjct: 248 RGLLDNRVDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPADQPPRRRK 301 >gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] Length = 276 Score = 362 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F+KM G+GN +V+D + + D I L+ FDQ++++ D D Sbjct: 1 MQIQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLADRNTGVGFDQLLVVEPPYDPESDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N D SEV CGNG RC RF+ + T G +V K + D ++V+M Sbjct: 61 HYRIFNADSSEVAQCGNGARCFARFVRMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPI IP + + ++ +I V L VSMGNPH + V D++ +D+ Sbjct: 121 GEPIWAPAKIPFRANAE----EKTYILRVEDTTL-FVGAVSMGNPHCVTVV-DNVDTFDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F E VN ++ S + LR +ERG G T ACGS ACA+V Sbjct: 175 EGLGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGIQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + +V+V + GG L I W H ++MTG A ++G++ + Sbjct: 235 LLDESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276 >gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] Length = 308 Score = 362 bits (930), Expect = 3e-98, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 141/285 (49%), Gaps = 10/285 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 Q ++ F KM G+GN +V+D + D I L+ FDQ++++ V Sbjct: 8 QGPVLRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDV 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + ++ +T +G++ K RDG ++V Sbjct: 68 DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P L+ IP A K G L +SMGNPH + V D++ Sbjct: 128 NMGVPELNPPAIPFAADQRKDVYTVDVNGQTVEL-----SAISMGNPHGVLVV-DNVDTA 181 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + S G L KHP F N+ +V LR +ERG G T ACGS ACA+VVA Sbjct: 182 PVESLGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVAGCL 241 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + V V++ GG L+IEW ++ V M G A +EG+L + Sbjct: 242 RGLLDSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286 >gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str. 301020] Length = 276 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDPHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] Length = 276 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F ++ +I V + VVSMGNPH + V DDL + Sbjct: 121 GVPEFEPSKIP----FRAKQTEKTYIMRVGERTIFCG-VVSMGNPHCVTVV-DDLDLTGV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 175 ETLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG ++G++ Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70] Length = 274 Score = 362 bits (929), Expect = 4e-98, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 137/281 (48%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T G ++ DG I ++MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTSIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW +FMTG+A ++G + + Sbjct: 234 LDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274 >gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 274 Score = 362 bits (929), Expect = 4e-98, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I LS FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + V DD+ + Sbjct: 121 PIWEPSQVPFTANKFEKNYILRTELQTV------LCGVVSMGNPHCVLQV-DDVKTAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+S +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 234 LDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL 274 >gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] Length = 274 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ + IP A F+K R + V VSMGNPH + VE D+ ++ Sbjct: 121 PVWEPNKIPFIANKFEKNYILRTTVQTV------LCGAVSMGNPHCVVQVE-DIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG A ++G + + Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274 >gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] Length = 277 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 10/283 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +VID+ + ++ I L+ FDQ++L+ +D +D Sbjct: 1 MLLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV++CGNG RC RF+ ++ ET G L + D I VDM Sbjct: 61 RYRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +++P D H V+ + VSMGNPHA+ V DD+ + Sbjct: 121 GVPRFAPEVVPFDAPADA----PAHCLEVDGE-TWDIGAVSMGNPHAVLRV-DDVAQAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ +HP F GVN+ +V S LR +ERG G T ACG+ ACA+V Sbjct: 175 ARLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAHGIRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG L + W + + MTG A +EG++ + Sbjct: 235 WLESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277 >gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] Length = 276 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 1 MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ + + T G L +DG ++V+M Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IPL S ++ + I H VSMGNPH + V DD+ + Sbjct: 121 GHPNFEPSKIPLKASKREL---TYIIRTQEHTV--FSGAVSMGNPHCVLEV-DDVTTAQV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V + Sbjct: 175 DILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQN 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + V V + GG L + W H V MTG A+ ++G++ + Sbjct: 235 KLSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] Length = 283 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ D +T+ FDQ++L+ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP D+++ H+ V L V+MGNPHA+ VE D+ + Sbjct: 122 GKPRFTSSEIPFVPVPDEVEDALTHMVMV-GLETVQVSCVNMGNPHAVIVVE-DVQTAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 AHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGVRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W V MTG + +EG+L Sbjct: 240 LLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGELQ 281 >gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999] Length = 276 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +V+F KM G+GN +V+D + + + I L+ FDQ++L+ D D Sbjct: 1 MLVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + + T G ++ +DG ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P+ + + + I + F VS+GNPH + V DD+ YD+ Sbjct: 121 GRPRFAPDDVPMKA---QKQENTYIIREADQTFFCG--AVSLGNPHCVMVV-DDIDTYDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL H F + VN+ ++ ++ LR +ERGVG T ACGS ACA+V Sbjct: 175 LGVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 K V+V + GG L I W ++H + MTG A+ ++GK+ Sbjct: 235 KLGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274 >gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] Length = 281 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID ++ D + ++ DQ++L+ + S D RI Sbjct: 5 FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ + S ET+ G + + + VDMG Sbjct: 65 YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D +P + D + H L + VSMGNPHA+ +V D++ +A Sbjct: 125 PRFDPSALPF-----EADAEAAHYALDTAGQLLDIGAVSMGNPHAVLWV-DEIQEAPVAE 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN A+ S + LR +ERG G T ACG+ ACA+V K Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 +R V+V + GG L I W D++ + MTG+A +EG +D+ + Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280 >gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586] gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586] Length = 274 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V D++ + Sbjct: 121 PNFEPQQVPFRAAKPE---KTYILRAAEHTVLCG--VVSMGNPHCVLQV-DNVDTAPVEE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] Length = 274 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF L +K T +G +V N D ++ V+MGE Sbjct: 61 RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R I V VVSMGNPH + VE D+ ++ Sbjct: 121 PIWEPAKVPFIANKFEKNYILRTDIQTV------LCGVVSMGNPHCVLQVE-DVKTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F N+ +V + + + LR +ERG G T ACG+ ACA+V Sbjct: 174 QLGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L+IEW ++MTG+A ++G + + Sbjct: 234 LDNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274 >gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15] Length = 304 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 10/285 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 Q M+ F KM G+GN +V+D + + I L+ + FDQ++++ V Sbjct: 8 QGPMLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDV 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + +K +T +G++ + R+G + V Sbjct: 68 DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P + IP A K G L +SMGNPH + VE D+ Sbjct: 128 NMGVPEFNPPAIPFAADRRKDVYTVDVDGQTVEL-----SALSMGNPHGVLLVE-DVDQA 181 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G L +HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 182 PVETLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVAGCL 241 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + V V++ GG L+IEW + V M G A +EG+L + Sbjct: 242 RGLLDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286 >gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] Length = 274 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T G +V D ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD++ ++A Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCGAVSMGNPHCVVQV-DDIHTANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + + LR ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW H ++MTG A ++G + + Sbjct: 234 LDNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDGVIYL 274 >gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] Length = 276 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++ + I ++ DQ++L+ Q D Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQSVALSPEQIRYIADRHFGIGCDQVLLVEKTQRDEADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ + DG I+V+MG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMGL 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP ++ + +G + VVSMGNPHA+ V DD+ +A+ Sbjct: 123 PIFDPAQIPFVSDSTEVIQ-PLQVGNESVQIT----VVSMGNPHAVQVV-DDVETAPVAT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN+ +V E + LR +ERG G T +CG+ ACA+VVA Sbjct: 177 QGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + + V MTG A +EG++++ Sbjct: 237 DNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276 >gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] Length = 278 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ ++ T G +V D +SV+MGE Sbjct: 65 RIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP F + ++ +I + VVSMGNPH + V DD+ ++ Sbjct: 125 PNFEPQAIP----FKAIKAEKTYILRAAEHTVLCG-VVSMGNPHCVLQV-DDVSAANVEL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 238 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W ++MTG A ++G + + Sbjct: 239 DEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDGFIHL 278 >gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 274 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 99/279 (35%), Positives = 138/279 (49%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K+ T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + VE D+ ++ Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCSAVSMGNPHCVVQVE-DIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L IEW H ++MTG A ++G + Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272 >gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 274 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 99/279 (35%), Positives = 137/279 (49%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + VE D+ ++ Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCSAVSMGNPHCVVQVE-DIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L IEW H ++MTG A ++G + Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272 >gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] Length = 276 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 1 MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + T G L +DG ++V+M Sbjct: 61 HYRIFNADGHEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IPL + ++ + I H VSMGNPH + V DD+ + Sbjct: 121 GHPNFEPSKIPLKATKREL---TYIIRAEEHTV--FSGAVSMGNPHCVMEV-DDIETAQV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ++ G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V + Sbjct: 175 STLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQN 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K V V + GG L + W H V MTG A+ ++G++ + Sbjct: 235 KLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305] gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305] Length = 274 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTSLQTV------LCGVVSMGNPHCVLQVE-DIQTAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 234 LDSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDGFVKL 274 >gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] Length = 283 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ G D +T+ FDQ++L+ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP D+ D H+ V L V+MGNPHA+ VE D+ + Sbjct: 122 GKPRFTSSEIPFVPVPDEADDALTHMVMV-GLETVQVSCVNMGNPHAVIVVE-DVQTAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VV+ L Sbjct: 180 AHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGVRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W V MTG + +EG+L Sbjct: 240 LLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGELQ 281 >gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017] Length = 275 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] Length = 274 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F ++ +I + VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQSVP----FRATKAEKTYIFRAAEQTVLCG-VVSMGNPHCVLQV-DDVAVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG LLI W H ++MTG A ++G + + Sbjct: 235 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] Length = 276 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F+KM G+GN +VID +T + I L+ DQ++L+ + +VD Sbjct: 1 MRIRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDGSEV++CGNG RC F+ R ++ ET GI+ + D +SVDM Sbjct: 61 RYRIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP + G V + VSMGNPHA+ V DD+ + Sbjct: 121 GVPRLLPEKIPFVADQQAVTYPLDVAGQV-----CSISAVSMGNPHAVMLV-DDVKSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP F VN +V S + ++LR +ERG G T ACG+ ACA+VV Sbjct: 175 GQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L I W H V MTG A + G++ + Sbjct: 235 LLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276 >gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] Length = 278 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 141/284 (49%), Gaps = 12/284 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVD 61 + F+KM G+GN +VID +++ D + L+ DQ++L+ D A+ D Sbjct: 1 MRIQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG+EV+ CGNG RC F+ R + ET GI+ + DG ++VD Sbjct: 61 FRYRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP M + + VSMGNPHA+ V D++ Sbjct: 121 MGPPRLKPWQIPFEAES-AMTSYPLEVEGETYEI----GAVSMGNPHAVLRV-DNVQTAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G L+ HP F VN+ +V S + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 175 VARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVSGRIQ 234 Query: 240 HKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L+I W + V MTG A + + G +DI Sbjct: 235 GLLDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278 >gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9] gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9] Length = 278 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 103/284 (36%), Positives = 146/284 (51%), Gaps = 12/284 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN V+D +T + I L FDQ++L+ QDA D Sbjct: 1 MKLKFTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC RF+ R+ ET RG++V + DG ++VDM Sbjct: 61 SYRIFNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + D + + G + + VVSMGNPHA+ V DD+ + Sbjct: 121 GPPRFRPADIPFVAAEDAVIHELEVAGQILGV-----TVVSMGNPHAVQVV-DDVDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +FG L+ H F VN ++ S ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 175 TAFGPLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRG 234 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W + H V+MTG A +EG++ + Sbjct: 235 LLDADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278 >gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] Length = 274 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIQRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G ++ D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGTVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDGFITL 274 >gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 274 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + +P F ++ +I + VVSMGNPH + V DD+ ++ Sbjct: 121 PVFEPQQVP----FRAAKPEKTYILRAEERTVFCG-VVSMGNPHCVLQV-DDVLTAEVEV 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ ++ S ES+ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 276 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F+KM G+GN +VID + + + I L+ FDQ++++ D D Sbjct: 1 MQVQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IPL + ++ +I V L SMGNPH + V DD+ ++ Sbjct: 121 GKPEFEPANIPLKANK----QENTYILRVGESTLFIGAA-SMGNPHCVMEV-DDVDTANV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ KH FSEGVN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 AEIGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K ++ V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2] gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2] Length = 275 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTATVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] Length = 288 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDM Sbjct: 61 RYRIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P L+ +P D + VN VSMGNPHA+ V DD+ + Sbjct: 121 GAPELEPARVPFRAQGLPTHAEGADALYGLEVNGR-TEWISAVSMGNPHAVQVV-DDVEN 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F VN +V ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 + V V GG L I W V MTG A +EG +D+ Sbjct: 239 RRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDLAA 285 >gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] Length = 276 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 1 MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ + T T G L +DG ++V+M Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IPL + ++ + I H VSMGNPH + V DD+ + Sbjct: 121 GHPNFEPSKIPLKATKREL---TYIIRTEEHTV--FSGAVSMGNPHCVLEV-DDITTAQV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V + Sbjct: 175 DILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQN 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K V V + GG L I W+ H V MTG A+ ++G++ + Sbjct: 235 KLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276 >gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703] gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703] Length = 274 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F ++ +I V + VVSMGNPH + VE+ + + + Sbjct: 121 PNFEPQQVP----FRAAKSEKTYILRVAERTVMCG-VVSMGNPHCVIQVEN-VDTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ + ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V+V++ GG L I W N +FMTG A ++G + + Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDGFIHL 274 >gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20] gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate Epimerase At 1.7a gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Ll-Azidap gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Dl-Azidap gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20] gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21] gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866] gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] Length = 274 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] Length = 274 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + + VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVETAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F + N+ +V +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] Length = 274 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F + +R +I + VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQTVP----FKAIKAERTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica] Length = 278 Score = 359 bits (921), Expect = 3e-97, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MGE Sbjct: 65 RIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP F + ++ +I V + VVSMGNPH + V D+ ++ Sbjct: 125 PEFEPHNIP----FRALRAEKTYILRVIEKTV-LCSVVSMGNPHCVIQVA-DVETAEVEI 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 238 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W N ++MTG A ++G + + Sbjct: 239 DSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278 >gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] Length = 278 Score = 359 bits (921), Expect = 3e-97, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 65 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F ++ +I + VVSMGNPH + V DD+ ++A Sbjct: 125 PNFDPQSVP----FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVLQV-DDVSVANVAL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E++ LR +ERG G T ACGS ACA+V Sbjct: 179 LGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQELL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG LLI W H ++MTG A ++G + + Sbjct: 239 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 278 >gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 4 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFH 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 64 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP D +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 124 EPNFDPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVQTAAVE 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 178 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 237 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 238 LAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278 >gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11] gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185] gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736] gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605] gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718] gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591] gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299] gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9] gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933] gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046] gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227] gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli] gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11] gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15] gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185] gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1] gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3] gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101] gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520] gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482] gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120] gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263] gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489] gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007] gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509] gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2] gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1] gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3] gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253] gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167] gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227] gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736] gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605] gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718] gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591] gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299] gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9] Length = 275 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] Length = 274 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQV-DDVETAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGSL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895] gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895] Length = 275 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNIDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863] Length = 275 Score = 358 bits (920), Expect = 4e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] Length = 274 Score = 358 bits (920), Expect = 4e-97, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] Length = 282 Score = 358 bits (920), Expect = 4e-97, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ + F KM G+GN +V D ++T + I ++ DQ++++ Q D Sbjct: 6 TTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQHPEND 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV++CGNG RC +F+ + + + ET+ G+L +R G ++VD Sbjct: 66 FRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQGDVTVD 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+L IP ++ D + +SMGNPHA+ V D++ Sbjct: 126 MGVPVLTPAEIPFNADSQAVNYDLALADQ-----TISISAISMGNPHAVTLV-DNVDTAP 179 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + +G L+ H F VN V S ES+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 IEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVVAGHLQ 239 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+ + GG L IEW H V MTG A ++G++ I Sbjct: 240 GLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282 >gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905] Length = 274 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1] gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1] Length = 282 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 130/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 8 KMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 67 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L + T G +V D + V+MG Sbjct: 68 YRIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMG 127 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + +P F + ++ V + VSMGNPH + VE + + Sbjct: 128 EPNFEPQQVP----FRANKAENLYLLRVAEQTVMLG-AVSMGNPHCVIQVES-VKTAQVE 181 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 182 LLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGV 241 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A ++G + + Sbjct: 242 LAPKVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 282 >gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW] gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW] Length = 291 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 8/275 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R +T+ A A++ DQI+L+ + + D F+R Sbjct: 4 RFLKMHGLGNDFVVLDARRDPLPLTTAAARAIADRHTGVGCDQIVLLEPPRHPAADLFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV + R T ET G+L + DGS++VDMG L Sbjct: 64 ILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGPARL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA + D + P L++ V MGNPHA+FFV DD DLA+ G Sbjct: 124 DWTQIPLAAAHDTLRV------PAGAGPLQDACCVGMGNPHAVFFV-DDAEAVDLATLGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F + N+ +A+V + + + +R WERG G+T ACGS +CA++VA+ T RA Sbjct: 177 VLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRA 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +++ GG L IEWH + HV MTG + G+L Sbjct: 237 AWIELDGGRLWIEWHGDGHVLMTGPVATAFTGELS 271 >gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 282 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 15/288 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDA 58 M ++F K G+GN ++ID R IT + A+ D ++ ++ Sbjct: 1 MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN- 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDG 114 D +RI N DGSE + CGNG+RC+ FL + ++ T+ G++ + DG Sbjct: 60 GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDG 119 Query: 115 SISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 I VDMG P L IP +A + K+ + VSMGNPH I FVE Sbjct: 120 QIKVDMGLPRLLAGEIPTNIAAADQKVINQPLEVEGK----TWEVTCVSMGNPHCITFVE 175 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ L + G HP F + N +V S + L +R WERG G+T ACG+ ACAS Sbjct: 176 -DVAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACAS 234 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +VA+ +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 235 LVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282 >gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103] gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103] gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355] Length = 282 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 8 KMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFH 67 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L + T G +V D + V+MG Sbjct: 68 YRIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMG 127 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + +P F + ++ V + VSMGNPH + VE + Sbjct: 128 EPNFEPQQVP----FRANKAENLYLLRVAEQTVMFG-AVSMGNPHCVIQVEST-KTAQVE 181 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L H F E VN+ + S E + LR +ERG G T ACGS ACA+V Sbjct: 182 LLGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGI 241 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A ++G + + Sbjct: 242 LSQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 282 >gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 274 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + + VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVDTAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] Length = 278 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 8/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN +V D ++ + L+ DQI+L+ + D Sbjct: 1 MRLRFTKMQGLGNDFVVFDGVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + T G + DG + VDM Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + D + + L +SMGNPHA+ V DD+ + Sbjct: 121 GAPAFTPARIPFSVETETADA--TYPLEIEDRTL-TIGALSMGNPHAVLIV-DDVESAPV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G L+ HP F VN ++ ++ LR ERG G T ACG+ ACA+VV+ Sbjct: 177 ATLGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVVSGRRRG 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + + V V + GG L+IEW H V+MTG A +EG+++ Sbjct: 237 RLDERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277 >gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202] gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202] Length = 274 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTSLQTV------LCGVVSMGNPHCVLQVE-DIKTAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 234 LDSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDGFVTL 274 >gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591] gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591] Length = 274 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + VVSMGNPH + VE+ + + Sbjct: 121 PNFEPQQVP----FRAVKPEKTYILRAAERTVLCG-VVSMGNPHCVLQVEN-VDSASVEE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDGFIHL 274 >gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 274 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFEPQSVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206] gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3] gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206] Length = 275 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073] gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1] Length = 275 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] Length = 276 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F+KM G+GN +VID + + + I+ L+ FDQ++++ D D Sbjct: 1 MQVQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ R T G +V RDG I+V+M Sbjct: 61 HYRIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPI + IPL + + + I +H F VSMGNPH + V DD+ D+ Sbjct: 121 GEPIFEPAKIPLKANKQENI---YIIRENDHTFFCG--AVSMGNPHCVLLV-DDVETADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 175 EGIGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQK 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 235 KLNKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021] Length = 274 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] Length = 276 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G ++ D ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I L VSMGNPH + V DD D+ + Sbjct: 124 EFEPNKIP----FKAKQTEKTYILRAEEKTLFCG-AVSMGNPHVVTVV-DDTQTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQELLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 EKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQLS 275 >gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74] gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70] gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671] gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71] gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71] gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6] gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218] gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227] gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304] Length = 274 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703] Length = 274 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFEPQSVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] Length = 274 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQTVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L] gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L] Length = 281 Score = 357 bits (918), Expect = 7e-97, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 142/284 (50%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + A+ + D ++ Q+ D Sbjct: 1 MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQE-GTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ +FL + + T+ G+++ + DG + VDM Sbjct: 60 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119 Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P L IP LA + K+ I L VSMGNPH I FVE D Sbjct: 120 GMPQLSAAQIPTVLAEADQKVINTPIEIADK----LWEVTCVSMGNPHCITFVE-DADAI 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G L H +F + N +V + L +R WERG G T ACG+ ACASVVA Sbjct: 175 PLETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 K++R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 235 TQKSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKLSP 278 >gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102] gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102] Length = 283 Score = 357 bits (918), Expect = 7e-97, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ D + + FDQ +++ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+M Sbjct: 62 RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + + + HI V + V+MGNPHA+ V D++ + Sbjct: 122 GKPRFMPSEIPFVPAHGETEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DNVETAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G+ + H F E VN+ ++ S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 DHWGSAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239 Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K V V + GG L I W + V MTG A+ +EG+L Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281 >gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60] Length = 274 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ R+ T G + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP F ++ +I V + VSMGNPH + VE D+ + Sbjct: 121 PQFEPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DVSRAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + MTG A ++G + + Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274 >gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] Length = 275 Score = 357 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB] gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB] Length = 274 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ V + VSMGNPH + VE + + Sbjct: 121 PNFEPQQVP----FRANKAENLYLLRVAEQTVMLG-AVSMGNPHCVIQVES-VKTAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A ++G + + Sbjct: 235 APNVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 274 >gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] Length = 276 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN +VID + I D I L+ FDQ++++ D +D Sbjct: 1 MLVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ R T G + +DG +SV+M Sbjct: 61 HYRIFNSDGTEVEQCGNGARCFARFVRMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L+ IP F R+ +I + VSMGNPH + V DD+ + Sbjct: 121 GQPKLEPHTIP----FKAAKRENTYIFRAQDHTVFCG-AVSMGNPHCVVEV-DDITTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL H F + N+ ++ S E + LR WERG G T ACG+ ACA+VV Sbjct: 175 NVLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGILQK 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K V V + GG L + W H V MTG A+ ++G++ + Sbjct: 235 KLAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276 >gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 276 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++DF+KM G+GN +V+D +++ I L+ FDQ++L+ D +D Sbjct: 1 MLIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF L + R T RG +V + + ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F ++ ++ + VSMGNPH + V + + Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-AVSMGNPHCVIEVPS-VADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+VV Sbjct: 175 ATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] Length = 274 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F ++ +I + VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] Length = 293 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 8/284 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ +T + I L+ + FDQ++++ VD Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP ++ +H+ +V +MGNPHA+ V DD+ D+ Sbjct: 121 GKPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKV-DDILTADV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 178 EKLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREG 237 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + + ++ GG LLI W V MTG +EG Sbjct: 238 WLDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVFSPD 281 >gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617] Length = 282 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 134/285 (47%), Gaps = 10/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + + F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 4 LAEQKMQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPD 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L + T G ++ +D + Sbjct: 64 LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVC 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP + + IP F + ++ + VVSMGNPH + V D++ Sbjct: 124 VNMGEPNFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVLQV-DNVKT 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 178 AAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGI 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 238 QQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 282 >gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101] gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101] Length = 274 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] Length = 276 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F+KM G+GN +V+D ++ + L FDQ++L+ D +D Sbjct: 1 MLIQFSKMHGLGNDFVVVDGVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEVQ CGNG RC RF L + T+ G +V + + ++V+M Sbjct: 61 HYRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F + ++ ++ V + VVSMGNPH + V + + Sbjct: 121 GVPEFEPAKIP----FRALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEVPS-VKDAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L F E +N+ V S ++LR +ERG G T ACG+ ACA+VV Sbjct: 175 ETLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQE 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V V + GG L I W+ + V+MTG A+ ++G++++ Sbjct: 235 KLKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276 >gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846] Length = 274 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] Length = 274 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VS+GNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSIGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] Length = 274 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTATVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274 >gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 274 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + + VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVETAKVDT 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + +V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] Length = 279 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 148/281 (52%), Gaps = 13/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN ++++ + A+ D ++LI + D + Sbjct: 1 MEFTKMHGLGNDFVMVNGFNEDIADPNQLAEAICDRHFGVGADGLVLILPSKQEEADFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 RI N DGSE + CGN +RC ++L R ++ ET+ GI+V + ++ ++ V Sbjct: 61 RIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEAVQV 120 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ + DK+ +++ + + VSMGNPH + FV DD Sbjct: 121 DMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEIT----AVSMGNPHTVIFV-DDADD 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + +HP F E N+ V + + +R WERG G+T ACG+ AC S VAS Sbjct: 176 FPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTVASI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 TN+ V V +LGG L IEW +++HV+MTG A++ + G+ Sbjct: 236 LNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAEEVFVGE 276 >gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 279 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 153/281 (54%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++ID + AI+ + DQ++L++ Q A D Sbjct: 3 KINFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 ++I N DGSEV+ CGNG+RC +++ R + ET+ GI+ K+ + + VDMG Sbjct: 61 MKIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGE-LVQVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P IP+ D + + VSMGNPHA+ F++++ ++ + Sbjct: 120 KPEFHPNKIPVDVEGDSAFDLMLEVSG----WHARINCVSMGNPHAVIFLDEEPKNFAVT 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G L+ HP+F + N+ A V + + +R WERG G T ACG+ ACA+ VA+ Sbjct: 176 KYGPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMVKEF 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 TN+ V+V +LGG LLIEW + HV+MTG A++ +EG + + Sbjct: 236 TNKKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKVP 276 >gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] Length = 290 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+GIGN +V+D ++ +D I L+ FDQ++L+ VD Sbjct: 13 MKLSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDF 72 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VR++ + ++ +T RGI++ + +G ++V+M Sbjct: 73 RYRIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNM 132 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + +P + M ++ V L V SMGNPHA+ VE D+ + Sbjct: 133 GEPRFEPAEVPFIADREAM----TYLLQVADQALE-ISVASMGNPHAVTVVE-DVDTAPV 186 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+V + Sbjct: 187 ERLGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRG 246 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 V V GG L+I W V+MTG A+ +EG +DI+ Sbjct: 247 LLQSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIE 289 >gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] Length = 276 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF L ++ T G +V D + V+M Sbjct: 61 HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 GEPNFEPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVETAAV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 ETLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W ++MTG A ++G + + Sbjct: 235 LLAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 276 >gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16] gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16] Length = 288 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 1 MKLQFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDM Sbjct: 61 RYRIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P L+ +P D + VN VVSMGNPHA+ V DD+ + Sbjct: 121 GAPELEPARVPFRAEGLPTRAEGADTLYGLEVNGR-TEWISVVSMGNPHAVQVV-DDVEN 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ H F VN +V ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 + V V GG L I W V MTG A +EG +D+ Sbjct: 239 RRGLLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDLAA 285 >gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP F + ++ + VVSMGNPH + V D++ + + Sbjct: 121 PGFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVIQV-DNVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274 >gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 369 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 148/294 (50%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + F K +G+GN +++D R + IT + A+ + D ++ + Sbjct: 81 ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTN-G 139 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ ++SFT T G++V + DG + Sbjct: 140 TDYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199 Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMGEPIL +P D + + + +I V N VSMGNPH + F + Sbjct: 200 KVDMGEPILKASDVPTRLRENKGDAVVKAKLNIDGV----TWNVTCVSMGNPHCVTFGSN 255 Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + + +LA G H +F N +V S L +R WERG G T ACG+ Sbjct: 256 ENQDLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTG 315 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACA+VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 316 ACATVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369 >gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ R+ T G + + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D IP F ++ +I V + VSMGNPH + VE D+ +A Sbjct: 121 PQFDPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DVSQAQVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W + M G A ++G + + Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDGFIHL 274 >gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP F + ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPQQIP----FRANKAENIYLMRAAEQTVMCG-VVSMGNPHCVLQV-DNVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQASL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H ++MTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PNFDPQTVPFRATKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] Length = 283 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ D + + FDQ +++ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+M Sbjct: 62 RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + + + HI V + V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPAHGENEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DDVETAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G ++ H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 EHWGGVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239 Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K V V + GG L I W + V MTG A+ +EG+L Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281 >gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99] gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 5/274 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++L+ D +D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG RC RF+ ++ ++ T G L + +DG+++V+MG P+L+ Sbjct: 61 DGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVLEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + + + VSMGNPH + VE D+ D+ G LL Sbjct: 121 SKIPFNAKRPEKTYLLQTDTAESKMQTFLCGAVSMGNPHCVLDVE-DIQAADVEGIGALL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV K ++ V Sbjct: 180 TQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQGKLDKRVR 239 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + GG L I W + ++MTG A+ ++G++ Sbjct: 240 VDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQIQ 273 >gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] Length = 276 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275 >gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. W3110] gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536] gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS] gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933] gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227] gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046] gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A] gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11] gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22] gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171] gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024] gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88] gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9] gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B] gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000] gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966] gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412] gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354] gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088] gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736] gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W] gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110] gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536] gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS] gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A] gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11] gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22] gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171] gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88] gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82] gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1] gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042] gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088] gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412] gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354] gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034] gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W] gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146] gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407] gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C] gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W] gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1] gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431] gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112] gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83] gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212] gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327] gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B] gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89] gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687] gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905] gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61] gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14] gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010] gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68] gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180] gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1] gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11] gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252] gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125] gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044] gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86] gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74] gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b] gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b] Length = 274 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ V + VSMGNPH + VE+ + + + Sbjct: 121 PNFEPQHVP----FRANKAENLYLLRVAEQTVMFG-AVSMGNPHCVIQVEN-VKTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274 >gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] Length = 276 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F+KM G+GN +V+D +++ + + L+ DQI+L+ +D Sbjct: 1 MKLKFSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLADRHFGVGCDQILLVEKASQPGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VRF+ ++ ET+RGI+ + DG+++VDM Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP D + H+ V L VVSMGNPHA+ V D + + Sbjct: 121 GIPRFLPAEIPFLAEDDVI----IHLLDVADETLET-SVVSMGNPHAVQVV-DSVDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ KHP F VN ++ ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 175 GEHGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A + G++++ Sbjct: 235 LLDSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276 >gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 275 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] Length = 290 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 137/284 (48%), Gaps = 10/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + S F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 12 LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DGSEV+ CGNG RC RF+ + + T +G +V + I+ Sbjct: 72 SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P + IP F ++ +I V L VSMGNPH + V DD+ Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRT 185 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + V V + GG L I W ++MTG A ++G++ Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 289 >gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae Length = 274 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G +V I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] Length = 276 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W + ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQIS 275 >gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7] gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7] Length = 277 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI + A D + Sbjct: 1 MKFTKMHGLGNDYIYVDATSQKIENPNEISRFVSDRHFGIGSDGLVLILPSEIA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ + + + T ET+ GI + + ++ + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + + N VSMGNPHAI ++E+ + + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VSEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v] Length = 274 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] Length = 274 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F + ++ V + VVSMGNPH + V D + + S Sbjct: 121 PNFDPQQVP----FRANKAENLYLMRVAEQTIMCG-VVSMGNPHCVLQV-DSVKTAAVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H ++MTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV GNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568] gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568] Length = 274 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + ++ + + H L VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQTVPFRATKEE---KTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W + +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274 >gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044] gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] Length = 275 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275 >gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1] gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1] Length = 276 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPDLIRRLADRHTGVGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G +V K + ++V+MG+P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH + V D D+ Sbjct: 124 EFEPNKIP----FKAKQKEKTYILRAGEHTLFCG-AVSMGNPHVVTVV-DSTEEADVDRL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 V+V + GG L I W H + MTG A ++G++ Sbjct: 238 ENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQIS 275 >gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510] gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510] Length = 283 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 105/286 (36%), Positives = 151/286 (52%), Gaps = 9/286 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 +F KM G+GN +VID R ++ + A++ DQ +++ DAF+R Sbjct: 4 EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG E +CGN RCV L R +F+T G+L A +G I+VDMG P L Sbjct: 64 IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA D + + V H P V+MGNPHA+FFV DD L G Sbjct: 124 DWAAIPLAAPADTLRVET-----VAHGGFAAPVAVNMGNPHAVFFV-DDAEAVPLDEVGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP F E N+ A+V S ++ +R WERG G+T ACGS +CA++VA+ T+R Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWIKK 289 + + GG L IEW + + V MTG + G+L ++ +G+ + + Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELVSR 283 >gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] Length = 310 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 8/284 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ ++T + + L FDQ++++ VD Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEVQ CGNG RC RF+ +R ++ ET GI+ + G + VDM Sbjct: 61 RYRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP ++ + + +V +MGNPHA+ V DD+ ++ Sbjct: 121 GKPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL--YVANMGNPHAVIKV-DDVLTAEV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 178 EKLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGVREG 237 Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V ++ + GG L I W + V+MTG A +EG + Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEGVFSPE 281 >gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163] Length = 274 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP F + ++ + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVLQV-DNVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274 >gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073] gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972] Length = 274 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF) (SP:P08885) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 275 Score = 355 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82] Length = 274 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC F L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937] gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937] Length = 274 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VSMGNPH + V D++ + + Sbjct: 121 PNFEPQQVPFRAAKPE---KTYILRAAEHTVLCG--AVSMGNPHCVIQV-DNVDTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDGFMHL 274 >gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] Length = 274 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 142/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQIANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385] gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385] Length = 290 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 136/284 (47%), Gaps = 10/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + S F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 12 LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DGSEV+ CGNG RC RF+ + + T +G +V + I+ Sbjct: 72 SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P + IP F ++ +I L VSMGNPH + V DD+ Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRAGEHTLFCG-AVSMGNPHVVTVV-DDIRT 185 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + V V + GG L I W ++MTG A ++G++ Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 289 >gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] Length = 283 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET +GI+ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP D+ D D G ++ V++GNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPVSDEGD-DACIYGVHLESGIQPVSCVNIGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] Length = 274 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ+++I D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVS+GNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSIGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703] gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703] Length = 283 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ D + + FDQ +++ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+M Sbjct: 62 RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + + + HI V + V+MGNPHA+ V D++ + Sbjct: 122 GKPRFMPSEIPFVPAHGENEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DNVETAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 EHWGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239 Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K V V + GG L I W + V MTG A+ +EG+L Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281 >gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 276 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F+KM G+GN +VID + + + I L+ FDQ++++ D D Sbjct: 1 MQVQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ R T G +V RDG ++V+M Sbjct: 61 HYRIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + IPL + + + I +H F VSMGNPH + V DD+ D+ Sbjct: 121 GEPEFEPSKIPLKANKQENI---YIIRENDHTFFCG--AVSMGNPHCVLLV-DDIATTDV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G +L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 175 EGIGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQK 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 K N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 235 KLNKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031] gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031] Length = 274 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC +F L +K + +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] Length = 279 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + AI D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FL + S+ T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP LA +K+ + V+MGNPH I FVE D+ Sbjct: 122 MGLPRLLAGEIPTTLAPVEEKVISVPLEVAGK----TWEVTCVNMGNPHCITFVE-DVAA 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L S G HP F + +N +V + L +R WERG G+T ACG+ ACAS+VA Sbjct: 177 IELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 237 LTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279 >gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] Length = 279 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 141/285 (49%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F K G+GN ++ID R IT + AI D ++ Q D Sbjct: 1 MTIEFTKYHGLGNDFILIDNRCDLTPLITPEMAIRMCDRHFGIGADGVIFALPGQK-GTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ FLT + + T+ G++ + DG + Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSKDYYLIHTLAGVIRPQLTDDGQVR 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L + IP LA K+ IG + VSMGNPH I FVE D+ Sbjct: 120 VDMGSPRLLAQEIPTTLAPGNSKIINLPLEIGNQ----TWHITCVSMGNPHCITFVE-DV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G HP+F + N +V + L +R WERG G+T ACG+ ACAS+VA Sbjct: 175 ASIPLEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R +++ GG L IEW + + ++MTG A++ + GK+ Sbjct: 235 GVLNNLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279 >gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146] gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146] Length = 274 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 129/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ R+ T + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP F ++ +I V + VSMGNPH + VE D+ + Sbjct: 121 PQFEPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DISRAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + MTG A ++G + + Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274 >gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304] gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579] gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149] gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33] Length = 283 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] Length = 282 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 137/282 (48%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID ++A S FDQ++L+ VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDGINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSELVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV CGNG RC VRF+T + +K ET G++V + +G ++V+M Sbjct: 62 RYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + HI V + V+MGNPHA+ VED + Sbjct: 122 GQPRFMPSEIPFVPDSGEDSDALTHIILVGLESVP-VSCVNMGNPHAVIIVEDT-ETAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G + H F E VN+ ++ + + LR +ERG G T ACG+ ACA+VVA L Sbjct: 180 GQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVAGVRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + +V V + GG L I W V MTG A+ +EG+L Sbjct: 240 LLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGELQ 281 >gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] Length = 279 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN +++D R + AI D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILVDNRASSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GADYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ RF+ + S+ T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + K+ + VSMGNPH I FV D+ Sbjct: 122 MGLPRLLAGEIPTTLGTAETKVINQPLEVAGQ----TWEVTCVSMGNPHCITFVS-DVAA 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G HP F + +N +V S + + +R WERG G+T ACG+ ACAS+VA Sbjct: 177 IPLEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + + ++MTG A+K + G+L Sbjct: 237 LTGNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279 >gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] Length = 279 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 151/283 (53%), Gaps = 13/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F+K G+GN +++D R + +T D L D ++ Q D Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQ-GGTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC+ +FL ++ K++ T+ G++ + DG + VDMG Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKVDMG 121 Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 EP L +LIP LA + +K+ + VSMGNPH + FV DD+ + Sbjct: 122 EPQLLAELIPTTLAPAGEKVVDLPLAVAGQTWAVT----CVSMGNPHCLTFV-DDVDSLN 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP FS+ N +V + L +R WERG G+T ACG+ ACA+VVA+ Sbjct: 177 LTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLT 236 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + +R +V++ GG L IEW +N ++MTG A++ + G+ +I Sbjct: 237 GRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279 >gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] Length = 274 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G + + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F ++ +I + VVSMGNPH + VE D+ ++ S Sbjct: 121 PEFEPQKVP----FRAQKVEKTYIIRAMERTVLCG-VVSMGNPHCVIQVE-DIKTAEVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW N ++MTG A ++G + + Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75] gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75] Length = 274 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945] gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136] Length = 283 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627] gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627] Length = 274 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] Length = 276 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFVVVDCITQNVFFSPDLIRRLADRNTGIGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV+ CGNG RC RF+ + + T +G ++ D ++V+MG P Sbjct: 64 IFNSDGGEVEQCGNGARCFARFVRMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F R++ +I L VS+GNPH + VE +L + Sbjct: 124 EFEPSKIP----FKAKQREKTYILRAQDKTLFCG-AVSLGNPHVVTVVE-ELSDALIDEI 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G +L H F E VN +V S + LR +ERG G T ACG+ ACA+V + Sbjct: 178 GPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 V+V + GG L I W + ++MTG A ++G+L Sbjct: 238 ENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQLT 275 >gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586] gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586] Length = 276 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQIS 275 >gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4] Length = 276 Score = 354 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275 >gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013] Length = 301 Score = 354 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 140 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298 >gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2 Length = 279 Score = 354 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R IT + A+ D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FL + ++ T+ G++ + DG I VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + K+ + VSMGNPH I FVE D+ Sbjct: 122 MGLPRLLAGEIPTTLGAADGKVINQPLEVEGQ----TWEVTCVSMGNPHCITFVE-DVAA 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G HP F + N +V S + L +R WERG G+T ACG+ ACAS+VA+ Sbjct: 177 IPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 237 LTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279 >gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] Length = 278 Score = 354 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R +A+ D ++ D + D Sbjct: 1 MEFTKYQGLGNDFILVDNRHSTTPSLSPEEAVKLCDRHFGIGADGVIFALPG-DENSDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ +G + VD Sbjct: 60 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVD 119 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L ++ +K+ +G + L VSMGNPH I FVE D+ Sbjct: 120 MGTPFLLAKEIPTTLTKAEEKVIDQSLEVGDQSWLVT----CVSMGNPHCITFVE-DVAK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 175 IPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 +R +V++ GG L IEW +N ++MTG A++ + G +D Sbjct: 235 LTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278 >gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] Length = 281 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R D + S A+ D ++ + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDRHFGIGADGVIFVLPGT-PQTDYQ 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ K++ +T+ G++ + + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVTVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + +K+ +G + L VSMGNPH I FVE+ + Sbjct: 122 MGPPQLQAAQIPTTLVTATEKVINQPLSVGGKSWLVT----CVSMGNPHCITFVEN-VDE 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G H F + N V + L +R WERG G+T ACG+ ACA+VVA Sbjct: 177 IPLEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVAGL 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 H+++R +V++ GG L I W + + HV+MTG AK+ + G Sbjct: 237 LTHRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277 >gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114] gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114] Length = 283 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 136/282 (48%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V++ D + + FDQ +++ +VD Sbjct: 2 KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++V+M Sbjct: 62 RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + + HI V + V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPAHGENKDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DDVETAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 EHWGGAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W + V MTG A+ +EG+L Sbjct: 240 LLKEGAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGELQ 281 >gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] Length = 274 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 98/277 (35%), Positives = 139/277 (50%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I + FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VVSMGNPH + VE+ + ++ Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTDIQTV------LCGVVSMGNPHCVLQVEN-IQTANVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V V + GG L IEW + ++MTG+A+ ++G Sbjct: 234 LDSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDG 270 >gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] Length = 286 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 10/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 S+++ F KM G+GN +V+D + + D I L+ FDQ++L+ D +D Sbjct: 10 STLIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 69 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++V+ Sbjct: 70 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 129 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+L+ IP K+++ + VSMGNPH + V+D Sbjct: 130 MGIPVLEPSKIPFTAK--KVEKTYLLLAS---SGTYLCGAVSMGNPHCVIEVDDVAAADV 184 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 185 -DTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGIQQ 243 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K +R V V + GG L+I W + ++MTG A+ ++G++ Sbjct: 244 GKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284 >gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] Length = 277 Score = 354 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 144/282 (51%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ + + I L+ FDQ++++ +D +D Sbjct: 1 MLLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV++CGNG RC RF+ + ++ ET G L DG +SVDM Sbjct: 61 RYRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + +P D+ H V+ + S+GNPHA+ V DD+ + Sbjct: 121 GKPRFAPQDLPFEADGDR----PLHDLEVDGQQISIGVA-SLGNPHAVLRV-DDVTTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP F VN +V S + LR +ERGVG T ACG+ ACA+V Sbjct: 175 ATLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVACGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I+W D ++ MTG A++ +EG++ I Sbjct: 235 LLESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276 >gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] Length = 276 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 22/288 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM+G+GN +VID ++T+ + ++ DQ++L+ VD Sbjct: 1 MRVAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + ++ +T G++ D ++VDM Sbjct: 61 GYRIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDM 120 Query: 121 GEPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P IP + + D+ R IG VSMGNPH + V Sbjct: 121 GVPRFAPDEIPFKADHEADSYLLEFDKQRVEIG-----------AVSMGNPHCVLRVA-A 168 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A +G +L +HP F + VN+ V S + LR +ERG G T ACG+ ACA++V Sbjct: 169 IDAAPIACWGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMV 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V + GG L I W V+MTG A+ +EG +++ Sbjct: 229 IGRRRGWLSEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276 >gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355] gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196] Length = 283 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] Length = 288 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 1 MKLQFTKMHGAGNDFIVLDGIHQKLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI+N DG EV+ CGNG RC VRF+T R ++S E + G++ K DG ++VDM Sbjct: 61 RYRIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 GEP L +P +D + VN VSMGNPHA+ V DD+ Sbjct: 121 GEPELTPARVPFIADGLPTRAEAQDTLYGLEVNGR-TEWISPVSMGNPHAVQIV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ H F VN ++ ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 + V V GG L I W V MTG A +EG +D+ T Sbjct: 239 RRGLLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLST 285 >gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320] gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320] Length = 274 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ ++ T G + + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F ++ +I + VVSMGNPH + VE D+ ++ S Sbjct: 121 PEFEPQKVP----FRAQKVEKTYIIRAMERTVLCG-VVSMGNPHCVIQVE-DIKTAEVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW N ++MTG A ++G + + Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] Length = 274 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + ++ + + H L VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQAVPFRATKEER---TYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W N +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573] gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573] Length = 276 Score = 354 bits (909), Expect = 9e-96, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQIS 275 >gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont] Length = 274 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 131/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +PL + + ++ V + VSMGNPH + VE + + + Sbjct: 121 PNFDPQQVPLRANK----AENLYLQRVAEQTVMFG-AVSMGNPHCVIQVES-VKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G + + Sbjct: 235 AVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274 >gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana] gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana] gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana] gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana] gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana] Length = 362 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG + Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P S +K + V N VSMGNPH I F + Sbjct: 193 KVDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 251 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 252 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 311 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359 >gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 274 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DNVETAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274 >gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131] gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131] Length = 278 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + VVSMGNPH + VE ++ ++ Sbjct: 125 PDFEPQRVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVIQVES-IHTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ + S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + ++MTG A ++G + + Sbjct: 239 AKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278 >gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a] gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a] Length = 274 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] Length = 278 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 11/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ +M F+KM G+GN +V+D + + + I+ L+ FDQ++L+ D Sbjct: 1 MERNM-QFSKMHGLGNDFMVVDGVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPD 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L ++ T G +V N + + Sbjct: 60 LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMVLTINENDDVC 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP + + +P F + ++ +I + VVSMGNPH + VE + Sbjct: 120 VNMGEPEFEPQKVP----FRAIKAEKTYIIRALERTVLCG-VVSMGNPHCVIQVES-VKT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G +L H F E N+ + S + LR +ERG G T ACGS ACA+V Sbjct: 174 AEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACAAVAIGI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W+ ++MTG A ++G + + Sbjct: 234 QQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278 >gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 276 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 147/282 (52%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D I LS + FDQ++++ D +D Sbjct: 1 MLLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC +F+ R ++ ET RG + + G ++VDM Sbjct: 61 RYRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + + +P + + I + +L P VS+GNPHA+ V+ + ++ Sbjct: 121 GAPSFEPQDLPFTAEPCDV---LYSIMAEDTEYLITP--VSVGNPHAVIKVDQLIDD-EV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ H F VN+ +V + + ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 AKVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+ + GG L IEW + + + MTG A+K +EG++ + Sbjct: 235 WLSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQIYL 276 >gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)] Length = 293 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 8/284 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ +T + I L+ FDQ++++ VD Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP ++ +H+ +V +MGNPHA+ V DD+ D+ Sbjct: 121 GKPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKV-DDILTADV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 178 EKLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREG 237 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + + ++ GG LLI W V MTG +EG Sbjct: 238 WLDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVFSPD 281 >gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1] gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1] Length = 286 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 8/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + + +T+ G++ + + DG ++VDM Sbjct: 61 EYVIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDM 120 Query: 121 GEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G+P+L+ L+P + + + + VSMGNPHA+ V DD+ H Sbjct: 121 GQPVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAPVSMGNPHAVQLV-DDVDH 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A++G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 180 APVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L IEW D V MTG A+ +EG++++ Sbjct: 240 RWGLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283 >gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] Length = 280 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 7 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D I V+MGE Sbjct: 67 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVNMGE 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + I V L VV+MGNPH + VE D+ D+ Sbjct: 127 PDFEPQRVPFRANKAE---KTYIIRAVERTVLCG--VVAMGNPHCVIQVE-DVNTADVEV 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 181 LGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 240 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VSV + GG L I W +FMTG A ++G + + Sbjct: 241 DNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280 >gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] Length = 286 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R + + +AI D ++ D + D Sbjct: 1 MEFTKYQGLGNDFILVDNRHNAIPLLSSKEAIKLCDRHFGIGADGVIFALPG-DENTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ + DG + VD Sbjct: 60 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEEDGQVKVD 119 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L + +K+ +G + VSMGNPH I FV D++ Sbjct: 120 MGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQSWSVT----CVSMGNPHCITFV-DNVAT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G + H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 175 IPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + +N ++MTG A+ + G + Sbjct: 235 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVM 277 >gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] Length = 274 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274 >gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] Length = 277 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 142/278 (51%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I LS FDQ++L+ D VD Sbjct: 3 LKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEVQ CGNG RC VRF+ ++ T+ G+L K N D S++V+MG Sbjct: 63 RIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LD + +P + V VSMGNPHA+ V+ D+ + Sbjct: 123 PQLDPEKLPFKAEAQSESYELC----VKGFDAVTIGAVSMGNPHAVINVK-DVKTAPVHE 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+L+ KH F E VN+ ++ + ++LR +ERG G T ACG+ ACA+VVA H+ Sbjct: 178 LGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVVAGIVQHRL 237 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 V V + GG L I W N V M+G A +EG++ Sbjct: 238 VSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQI 275 >gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 274 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274 >gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] Length = 274 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T ACGS A A+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] Length = 274 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +++D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 PNFDPQTVP----FRAAKAEKTYIMRAAEHTV-LAGVVSMGNPHCVLQV-DDVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDGFIHL 274 >gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis alpha710] gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190] gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902] Length = 283 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 274 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274 >gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT] gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT] Length = 274 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G ++ + D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ + L VVSMGNPH + VE D+ H ++ Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTGEA ++G + + Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274 >gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640] gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06] Length = 283 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID + I + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+T + +K ET +G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] Length = 279 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T D I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPD 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L ++ T +G ++ + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + +P A F+K R + V VVSMGNPH + VE D+ Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIK 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 TAPVNELGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 IMQGLLDSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDGFIKL 279 >gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] Length = 280 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 16/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K G+GN +++D ++ A+ D ++L+ A D Sbjct: 1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 +RI N DGSE + CGN +RCV ++L R +K ET+ G+++ + E R + Sbjct: 59 SMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L+ IP+ ++ + G + VSMGNPH + FV+ DL Sbjct: 119 RVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRIT----AVSMGNPHCVIFVQ-DLD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L+ HP F N+ +V + E + +R WERG G T ACG+ ACA+VVA Sbjct: 174 AVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T R V+V + G L IEW + HV+M+G A++ + G+ +T Sbjct: 234 VLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280 >gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 275 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS+V CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275 >gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568] gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399] Length = 283 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 139/288 (48%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG + Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P +K + V+ N VSMGNPH I F + Sbjct: 193 KVDMGTPILKAQDVPTKLPGNKGEAVVQAELVVDGES-WNVTCVSMGNPHCITFGKKGGP 251 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G +H MF N V S L +R WERG G T ACG+ ACA Sbjct: 252 NLKVDDLNLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLACGTGACA 311 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359 >gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451] gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451] Length = 276 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I L VSMGNPH + V DD+ + + Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQIS 275 >gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] Length = 274 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + T G +V + + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VSMGNPH + V DD+ +A Sbjct: 121 PNFDPQAVPFRATKAE---KTYIMRAAEHTVLCGI--VSMGNPHCVLQV-DDVNTAKVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W + +FMTG A ++G + + Sbjct: 235 SEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274 >gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca] Length = 286 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A+ D ++ D + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + ++ T G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP S + + + + VSMGNPH I FV DD+ Sbjct: 122 MGLPRLLAAEIPTTLSENSLKVIDVPLQVAGQP--WSVTCVSMGNPHCITFV-DDVASVP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 + +R V+V++ GG L IEW + ++MTG A+ ++G+L + Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFPINE 285 >gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 275 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + +F ++ +I + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQV----TFRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330] Length = 282 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 145/282 (51%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID ++ I + FDQ++++ Q VD Sbjct: 4 LKFSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T + + ET RGI+ + N DG ++V+MG+ Sbjct: 64 RIFNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQ 123 Query: 123 PILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +P RS +K D F + VN + +VSMGNPHA+ V D+ + Sbjct: 124 PRFAPDDVPFVLRSGEKADDKTFIV--VNGIDSAEMSLVSMGNPHAVMLV-GDVATAPVE 180 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 ++GN L H F VN+ ++ + + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 181 NWGNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSL 240 Query: 242 T--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V + GG L I W D V MTG A + G++ + Sbjct: 241 LTAGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282 >gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa] gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa] Length = 281 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 9/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K G+GN +++D R + IT + L D ++ + D Sbjct: 1 LHFVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPGIN-GTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC RF+ K+ SF+ T G++V + DG + VD Sbjct: 60 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEP+L +P + +K D V+ N VSMGNPH + F + + + Sbjct: 120 MGEPVLKAADVPTKLAANKNDAVVKSELVVDG-VTWNVTCVSMGNPHCVTFGDLQVDSLN 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G H +F N +V S L +R WERG G T ACG+ ACA+VVA+ Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 R +V + GG L IEW ++NHV+MTG A+ ++G + + Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281 >gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 274 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + + + + V L VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVPFRANKAE---KTYIMRAVEQTILCG--VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274 >gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] Length = 290 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R + +A+ D ++ D D Sbjct: 13 MEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDD-QSDYT 71 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RFL KS+ +T+ GI++ + +G + VD Sbjct: 72 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKVD 131 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L + +K+ +G + VSMGNPH I FVE+ + Sbjct: 132 MGNPFLLAKEIPTTLTKGEEKVINQFLEVGGQSWSVT----CVSMGNPHCITFVEN-VAT 186 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G + H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 187 IPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 246 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + +N ++MTG A+ + G + Sbjct: 247 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 289 >gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis WUE 2594] Length = 283 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAQV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39] Length = 295 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 11/284 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A+ D ++ D + D Sbjct: 11 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 69 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + ++ T G++ + DG + VD Sbjct: 70 MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 129 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP S + + + + VSMGNPH I FV DD+ Sbjct: 130 MGLPRLLAAEIPTTLSENSLKVIDVPLQVAGQP--WSVTCVSMGNPHCITFV-DDVASVP 186 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 187 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 246 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +R V+V++ GG L IEW + ++MTG A++ ++G+L Sbjct: 247 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQLTFP 290 >gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223] gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223] Length = 290 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 18 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 78 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 137 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I L VSMGNPH + V DD+ + + Sbjct: 138 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRAAAVETL 191 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 192 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 251 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 252 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQIS 289 >gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341] gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341] Length = 276 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + VE D+ + + Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVE-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQIS 275 >gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894] gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894] Length = 274 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PVFEPSLVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W N +FMTG A ++G + + Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] Length = 281 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 15/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K +G+GN ++ID R + + + A+ D ++ Q A D Sbjct: 1 MKIPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQ-AETD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF----TFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ +F+ + T+ G ++ + + ++ Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVT 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L IP L + +K+ + + L VSMGNPH + FV DL Sbjct: 120 VDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVT----CVSMGNPHCVTFV-GDL 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G HP+F + N+ V + + + +R WERG G+T ACG+ ACA VVA Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + K +R +V++ GG L I W +N V+MTG AK +EG I Sbjct: 235 ALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281 >gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801] gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801] Length = 281 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L S DK+ + L VSMGNPH I FV+ D++ Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVK-DVWG 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + +N ++MTG A+ + G ++ Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281 >gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] Length = 301 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298 >gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] Length = 274 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D S+ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + + F ++ +I + VVSMGNPH + V D + + +A+ Sbjct: 121 PNFDPQQV----LFRAARVEKTYIMRAAEQTVLCG-VVSMGNPHCVIAV-DSVDNAPVAT 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V + Sbjct: 175 LGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQGQL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDGFIHL 274 >gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] Length = 283 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+T + +K ET +G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F E VN+ +V + LR +ERGVG T ACG+ ACA+V A L Sbjct: 180 RETGPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGIRLG 239 Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +++ + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280 >gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 275 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS F+Q++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V D++ + Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17] gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17] Length = 328 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 10/293 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 ++ F KM G+GN +V+D + + I L+ FDQ++++ VD Sbjct: 33 GGVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVD 92 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ + +K +T GI+ + +DG + VD Sbjct: 93 FRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVD 152 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L+ +P + + + VN + VVSMGNPH + DD+ Sbjct: 153 MGVPRLEPATVPFSAD----EFAPVYNLDVNGQNIEL-SVVSMGNPHGVILT-DDVDSAP 206 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A+ G LL KH F N+ ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 207 VATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVAGCLR 266 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 + V V++ GG L+IEW V M G +EG+L + +++ + Sbjct: 267 GLLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPAEPGMRRRK 319 >gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] Length = 281 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L S DK+ + L VSMGNPH I FV+ D++ Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVK-DVWG 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + NN ++MTG A+ + G ++ Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281 >gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3] gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3] Length = 269 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 10/273 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + D I L+ FDQ++L+ D +D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+MG P+L+ Sbjct: 61 DGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPMLEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + K+++ + VSMGNPH + V DD+ + D+ + G+ L Sbjct: 121 SKIPF--NAKKVEKTYLLMASTG---TYLCGAVSMGNPHCVIDV-DDVANTDVDTIGSEL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV K R V Sbjct: 175 TQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERNVR 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V + GG L+I W + ++MTG A+ ++G++ Sbjct: 235 VDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267 >gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708] gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708] Length = 279 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + A+ D ++ Q+ D Sbjct: 3 IEFTKYHGLGNDFILIDNRSSLTPVITPQQAVKWCDRHFGIGADGVIFALPGQND-TDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FLT + + T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTKDYYRIHTLAGVITPQLTHDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L + IP +F D ++ + VSMGNPH I F+E D+ Sbjct: 122 MGLPRLLAQEIPT--TFAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIE-DVAAIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + +NL + + L +R WERG G+T ACG+ ACA +VA Sbjct: 179 LEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAGVLN 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R ++++ GG L IEW + + ++MTG A++ + GK Sbjct: 239 DKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279 >gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] Length = 275 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 138/282 (48%), Gaps = 11/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID ++ I + FDQ++++ ++ D Sbjct: 1 MKLKFTKMHGLGNDFIVIDAINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ ++ + ET GI++ +G +SVDM Sbjct: 60 RYRIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D IP F +R + VN + VSMGNPHA+ V D+ + Sbjct: 120 GIPRFDPARIP----FITQERALTYPLNVNDREIE-ISAVSMGNPHAVQIVP-DIDLAPV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G + HP F E VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 174 TSEGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V M GG L I W ++ V+MTG A +EG +D+ Sbjct: 234 LLDSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275 >gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] Length = 284 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN ++++ D + + A + D ++++ + D + Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLCRRHFSIGADGLIIVLPPESVEHDFRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 RI N DGSE + CGNG+RC +L R ET+ GI+ + I V Sbjct: 63 RIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSLIKV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P + IP+ D++D + + + L N VSMGNPH I FVE D+ Sbjct: 123 NMGRPHFKSEEIPVNIE-DELDYVKNFPLKIGNKKL-NINCVSMGNPHTIIFVE-DVNQI 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++++G + +P+F + N+ ++ S + + +R WERG G+T ACG+ ACASVVA Sbjct: 180 PVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + + VFMTG A+ + GK+ I+ G Sbjct: 240 NGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284 >gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis 8013] Length = 283 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa] gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa] Length = 314 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 140/291 (48%), Gaps = 14/291 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S + F K G+GN +V+D R + A+ + D ++ + Sbjct: 26 SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVN-GT 84 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ KR+SFT T G++V + DG + Sbjct: 85 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQV 144 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMGEP+L +P + +K D V N VSMGNPH + F Sbjct: 145 KVDMGEPVLKAANVPTKLASNKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGTKGGE 203 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 204 DLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGACA 263 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 264 TVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314 >gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6] gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6] Length = 277 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISRFVSDRHFGIGSDGLVLILPSDLA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ + + + T ET+ GI + + ++ + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + + N VS+GNPHAI ++E+ + + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSIGNPHAITYIEN-VEEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336] gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336] Length = 274 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ + L VVSMGNPH + VE D+ H ++ Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L+IEW H ++MTGEA ++G + + Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274 >gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] Length = 288 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 137/287 (47%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T++ AL+ DQ++++ VD Sbjct: 1 MKLQFTKMHGAGNDFVVLDGIHQKLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDM Sbjct: 61 RYRIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P L+ +P D + +N VSMGNPHA+ V DD+ + Sbjct: 121 GAPELEPARVPFRPDGLPVRTQGEDIAYGLEINGR-TAWISPVSMGNPHAVQVV-DDVEN 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 + V V GG L I W V MTG A +EG +D+ Sbjct: 239 RRGLLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDLAA 285 >gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] Length = 281 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID + + I + FDQ++++ + A Sbjct: 1 MTIHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWANRHFGIGFDQLLIVEPPKTADTLF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC R++ + K T G +V N G ++VDM Sbjct: 61 TYRIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+ IP + + VSMGNPHA+ VE+ + + Sbjct: 121 GRPMFTPTNIPFITECEATSYPLTLDDGSEWVID----AVSMGNPHAVLEVEN-VDTAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ H F VN+ ++ + + LR +ERG G T ACG+ ACA+VV+ + Sbjct: 176 SHLGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAAVVSGIRRN 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLD 280 + + V + GG L + W + V MTG A+ +EG++ Sbjct: 236 RLDSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQIT 277 >gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541] gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541] Length = 278 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + VVSMGNPH + VE + ++ Sbjct: 125 PEFEPQKVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVVQVES-VQTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ + S E + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGIGQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A ++G + I Sbjct: 239 SKRVRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278 >gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 274 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 274 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638] gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638] Length = 274 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F + ++ +I + + VVSMGNPH + V DD+ + Sbjct: 121 PNFEPSAVP----FRAIKAEKTYIMRASEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDGFIHL 274 >gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 274 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F + ++ +I V + VVSMGNPH + V D+ ++ Sbjct: 121 PEFEPHHVP----FRALRAEKTYILRVAERTVLCG-VVSMGNPHCVIQVP-DVETAEVDI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++MTG A ++G + + Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274 >gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297] gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297] Length = 274 Score = 351 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 9/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID ++++ I FDQ++L+ D Sbjct: 1 MRLKFTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV++CGNG RC RF+ ++ + ET G L + +G ++VDM Sbjct: 61 RYRIFNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP D+ + V L + +++GNPH + V DD+ D+ Sbjct: 121 GRPRTRPDKIPFLAD----DKAALYDINVLDETL-SISAINVGNPHCVTRV-DDVLTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F + VN ++ ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 ERLGPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + VSV + GG L I W ++ MTG A + +EG + Sbjct: 235 WLDHTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEGVIT 274 >gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51] gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51] Length = 285 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH + V DD+ + + Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 V V + GG L I W ++MTG A ++G Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDG 272 >gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032] gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032] Length = 274 Score = 351 bits (901), Expect = 7e-95, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PVFEPSLVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ ++ + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W N +FMTG A ++G + + Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As] Length = 287 Score = 351 bits (901), Expect = 7e-95, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 7/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 V F KM G GN +V+D +++ + L+ DQI+L+ VD Sbjct: 1 MQVAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLADRHFGVGADQILLVEAAPSPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VDM Sbjct: 61 GYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D +P A D + P++ + V+SMGNPHA+ V DD+ Sbjct: 121 GAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRV-DDVDTA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + S G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA Sbjct: 180 PVLSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 AV V+ GG L I W V MTG A ++G +D+ Sbjct: 240 HGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284 >gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65] gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65] Length = 278 Score = 351 bits (901), Expect = 7e-95, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 6/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H + + LS FDQ++++ + VD Sbjct: 1 MLLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ET GI+ +DG + V+M Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G +P + ++ +R + + + + VSMGNPH + V DD++ + Sbjct: 121 GAARFSPSDLPF--NAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVV-DDIHSELV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H F + VN ++ + +DLR +ERG G T ACG+ ACA+V + Sbjct: 178 NQLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKWG 237 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W V M G + ++G+L + Sbjct: 238 LVDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278 >gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2] gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2] Length = 277 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ + + + T ET+ GI + + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + + N VSMGNPHAI ++E+ + + Sbjct: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VDEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ + H++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277 >gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] Length = 283 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 279 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + +P A F+K R + V VVSMGNPH + VE D+ Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 LAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313] Length = 280 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ S+ +S D ++LI + A D + Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +++ R + ET+ GI L ++ + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + I VSMGNPHA+ +V++ + + Sbjct: 119 DMGEPILKPENIPVNSDKEIFRTEPVEIDGKEFKVT----CVSMGNPHAVSYVKN-VDIF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + HP+F + +N V +L +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + R +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+ Sbjct: 234 NGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277 >gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603] gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603] Length = 276 Score = 350 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I L VSMGNPH + V DD+ + + Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQIS 275 >gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] Length = 283 Score = 350 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID + I + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET +G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42] gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42] Length = 315 Score = 350 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 140/292 (47%), Gaps = 12/292 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 ++ + F KM+G GN +V+D +T L+ DQI+++ A + Sbjct: 22 RAMHIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILIVRPSPGAGI 81 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++V Sbjct: 82 DFEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTV 141 Query: 119 DMGEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 DMG P L+ +P + + + VVSMGNPHA+ V Sbjct: 142 DMGRPELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGNPHAVQLV- 200 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ +A G L+ HP F + VN ++ + + LR +ERG G T ACG+ ACA+ Sbjct: 201 DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAA 260 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 VVA L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 261 VVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312 >gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] Length = 277 Score = 350 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 134/282 (47%), Gaps = 9/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN ++ID IT + L+ DQ++++ D Sbjct: 1 MRLRFTKMHGLGNDFVMIDAISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV++CGNG RC F+ R + T ET G +V D ++VDM Sbjct: 61 KYRIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PIL IPLA + + P VSMGNPHA++ V +D + Sbjct: 121 GAPILSPADIPLAAP----QQATSYTLPTQGAGDITIGAVSMGNPHAVYCV-NDCKTAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F + VN +V S ++LR +ERG G T ACG+ ACA+VVA Sbjct: 176 ETLGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++ V MTG A + G++ I Sbjct: 236 LLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277 >gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 274 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L S ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] Length = 290 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 144/291 (49%), Gaps = 15/291 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + + F KM GIGN + ++ ++ +S D ++LI A Sbjct: 5 REQPMKFTKMHGIGNDYVYVNCFEESIKNPAEVSKFVSDRHFGIGSDGLILI--SPSAKA 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D + I N DGS+ + CGNG+RCV +++ + + ET+ GI L + + Sbjct: 63 DFRMNIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVA 122 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++ V+MG PIL+ K IP+A + + + + + VSMGNPHAI F+ D+ Sbjct: 123 TVEVNMGAPILEPKKIPVAVENNPVVDVPVEVKGKTY----HMTCVSMGNPHAIIFM-DN 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+ + G HP+F + N V ++++R WERG T ACG+ ACA+ V Sbjct: 178 VKELDIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTV 237 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284 A +KT V+V +LGG L I W + V+MTG A ++G++ + G Sbjct: 238 ACILNNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288 >gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14] gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14] Length = 276 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 1 MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PI + IP+ ++ +I L SMGNPH V DD+ D+ Sbjct: 121 GVPIFEPNKIPMKAK----QAEKTYILRAGEQTLFCGAA-SMGNPHC-VTVVDDVDTADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + +FMTG A ++G+ Sbjct: 235 LLDENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] Length = 280 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 12/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + FAK G+GN +++D R +T + A+ + D ++ D Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPG-SGDSDYV 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC+ +FL + + T G++V G ++VDMG Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121 Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 L IP L + D++ +G VSMGNPH I FVE D+ Sbjct: 122 PAYLKPVEIPTTLTGTGDRVVEADLEVGDRPWKVT----TVSMGNPHCITFVE-DVAAVP 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G L HP+F + N V + L +R WERG G T ACG+ ACA++VA+ Sbjct: 177 LAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLT 236 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 +++R +V++ GG L IEW ++ H+FMTG A K + G +++ Sbjct: 237 GRSDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMELAA 280 >gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20] gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 274 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] Length = 278 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RFL +K T G + + D + V+MGE Sbjct: 65 RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP + + H L VVS+GNPH + VE D+ ++A Sbjct: 125 PVFTPRQIPFCA---TTTEKTYILRTAGHTTLCG--VVSIGNPHCVLQVE-DVATANVAL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + N+ ++ ++++LR ERGVG T ACGS ACA+V Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V VK+ GG L I+W H ++MTG A ++G + + Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278 >gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas arsenicoxydans] Length = 283 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +VID + T L+ DQ++++ Q A VD Sbjct: 1 MKIKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDM Sbjct: 61 RYRIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDM 120 Query: 121 GEPILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G PIL + +P S D + V+SMGNPHA+ V D H Sbjct: 121 GAPILTPEDVPFDVSGLLCKAEGADTLWPLDIKGE-THWISVLSMGNPHAVQVVA-DADH 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 179 APVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+ GG L I W +N V +TG A +EG++++ Sbjct: 239 RRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283 >gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945] gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18] gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140] gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1] gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945] gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 283 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] Length = 274 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVLQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] Length = 314 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 137/282 (48%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID S I A + FDQ++L+ Q + D Sbjct: 32 LKFSKMHGLGNDFMVIDGINQVFTPNSAHIAAWANRHFGIGFDQLLLVERAQTPAADFRY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EVQ CGNG RC +F+ + + ET GI+ + +G ++VDMG Sbjct: 92 RIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVDMGA 151 Query: 123 PILDWKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP D I N +VSMGNPHA+ V DD Sbjct: 152 PRVLPDDIPFRLPADGSETAGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRV-DDTKTAP 210 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G L +HP F E VN+ ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 211 VAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAAVVAGMRQ 270 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L ++WH +HV MTGEA ++G+L Sbjct: 271 GWLAAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312 >gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] Length = 283 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D + G ++ V+MGN HA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGDDACIY-GVHLESGIQPVSCVNMGNSHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58] gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58] Length = 283 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385] Length = 301 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298 >gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 140/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV GNG RC RF L +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + V DD+ ++ Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN ++ + E + LR +ERG G T A GS ACA+V Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 279 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 141/286 (49%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L S ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + +P A F+K R + V VVSMGNPH + VE D+ Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] Length = 295 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D + +P A + R+ + P++ R VSMGNPHA+ V DD+ + Sbjct: 121 GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVV-DDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 + + V V GG L I W + + M G A +EG++++ Sbjct: 240 RGRLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286 >gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] Length = 287 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D + +P A + R+ + P++ R VVSMGNPHA+ V D+ + Sbjct: 121 GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVV-GDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 240 RGLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286 >gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5] gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5] Length = 277 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ + + + + ET+ GI + + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + + N VSMGNPHAI ++E+ + + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VEEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F + N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 174 PLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L+IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277 >gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 279 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MGEPI + +P A F+K R + V VVSMGNPH + VE D+ Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] Length = 279 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM+G+GN +VID + + I ++ DQ++L + + D Sbjct: 1 MKVRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118 I N DGS+ + CGNG+RC+ RFL R R ETI G+ + DG ++V Sbjct: 61 GYLIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P+L+ IP + + G V L VSMGNPHA+ V DD+ Sbjct: 121 DMGAPVLEPPHIPFRAPSRAREYELEVEGQVVRLG-----AVSMGNPHAVLRV-DDVDSA 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G + H F VN+ +V + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 175 PVETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 AV V + GG L+I W + HV+MTG A+ +EG++ + Sbjct: 235 RGWLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279 >gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72] gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72] Length = 277 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++T + A++ DQ++++ VD Sbjct: 3 IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ DG +SVDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IP D + + VSMGNPHA+ V D+ +A Sbjct: 123 PELSPARIPFVSDSDAWVQPLQLAEDTVAI-----TAVSMGNPHAVQVVA-DVDTAPVAR 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 QGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVAGIGRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V+ GG L I W V MTG A +EG+L++ Sbjct: 237 VSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277 >gi|255636095|gb|ACU18392.1| unknown [Glycine max] Length = 359 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + S A+ + D ++ + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGIS-G 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL +P +K D V + + VSMGNPH + F + Sbjct: 190 RVDMGEPILKASDVPTKLHANK-DNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L + WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] Length = 276 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F+KM G+GN +VID ++T + I L FDQ++L+ ++A D Sbjct: 1 MKLKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC +F+ + + ET RG++ + DG VDM Sbjct: 61 RYRIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P + + + P+ SMGNPHA+ V DD+ + Sbjct: 121 GVPRFRPADLPFLADAEAL----TYSLPLPEGRCEIGIA-SMGNPHAVQRV-DDVDAAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + HP F + VN ++ + + LR +ERG G T ACG+ ACA+VV Sbjct: 175 AEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V GG ++IEW + + V MTG A ++G++++ Sbjct: 235 LLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276 >gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] Length = 292 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + A +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++VDMG Sbjct: 63 VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 122 Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P L+ +P + + + VVSMGNPHA+ V DD+ Sbjct: 123 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGNPHAVQLV-DDVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F + VN ++ + + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 242 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289 >gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1] gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 7/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +++ ++ DQ++++ + VD Sbjct: 1 MKIKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + DG I+VDM Sbjct: 61 RYRIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G PIL +P + + + P++ VVSMGNPHA+ VED Sbjct: 121 GAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDS-EAA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + S G L+ +H F + VN +V ++LR +ERG G T ACG+ ACA+VVA Sbjct: 180 PVLSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 + V+V+ GG L I W V MTG A +EG++++ Sbjct: 240 RGLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284 >gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] Length = 275 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +VID H ++T + I +S FDQ++LI +A+ D Sbjct: 1 MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + +T G L+ + + D I+V+MG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IPL + RF+ VN + VSMGNPHA+ V D+ +A Sbjct: 121 IPRHAPAEIPLLAEEES----RFYTVLVNETE-KAFGAVSMGNPHAVIQVT-DVKTAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H F E VN+ +V + + LR +ERG T ACGS ACA+VV + Sbjct: 175 ELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHNL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VSV + GG L I W V MTG A +EG++ + Sbjct: 235 LDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275 >gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12] Length = 275 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHWLIQV-DDVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] Length = 283 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V DD+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J] gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J] gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] Length = 292 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 1 MKLHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDM Sbjct: 61 RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P D H +N VSMGNPHA+ V DD Sbjct: 121 GAPVFEAARLPFLPEGLPTRTQGDDTQHALQINGR-TEWLSTVSMGNPHAVQIV-DDTEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W + V MTG A +EG LD+ K Sbjct: 239 RRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDLDALK 287 >gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 275 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 13/283 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN +V+D N+ I L+ DQ++L+ + D Sbjct: 1 MKLKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLADRHFGIGCDQLLLVEKAE-GQADF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VR++ + ET+ G++ + +G+I+V+M Sbjct: 60 RYRIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVNM 119 Query: 121 GEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G+PI + + IP + PV +SMGNPHA+ V D+ Sbjct: 120 GKPIFEPERIPFIADQCALTYQLELPDSPV------TICALSMGNPHAVRVVT-DIARAP 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A+ G L+ +H F VN+ +V + LR +ERG G T ACG+ ACA+VVA L Sbjct: 173 VATEGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGITL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +R V V GG L I W V+MTG A +EG++++ Sbjct: 233 GLLDRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275 >gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap Length = 317 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 23 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 81 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG + Sbjct: 82 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 141 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P S +K + V N VSMGNPH I F + Sbjct: 142 KVDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 200 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 201 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 260 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 261 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 308 >gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] Length = 278 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 5 LQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + VVSMGNPH + V D++ ++ Sbjct: 125 PDFEPQNVP----FRAVKAEKTYIIRAQERTV-FAGVVSMGNPHCVVQV-DNVQTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ V S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAVGVGQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W + ++MTG A ++G + I Sbjct: 239 ANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278 >gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max] Length = 359 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + S A+ + D ++ + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGIS-G 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL +P +K D V + + VSMGNPH + F + Sbjct: 190 RVDMGEPILKXXDVPTKLHANK-DNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L + WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] Length = 370 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 9/288 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 ++ + F KM G GN +V+D ++T+ + AL+ DQ++L+ V Sbjct: 58 ENVKLKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALANRHFGVGADQLLLVEKPTVEGV 117 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + V Sbjct: 118 DFRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIV 177 Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ D +L+P A + R+ + P++ + R VVSMGNPHA+ V DD Sbjct: 178 DMGTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAE 236 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+V A Sbjct: 237 AFPVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAG 296 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + M G A +EG++++ Sbjct: 297 IRRGLLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL 344 >gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] Length = 284 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN ++ID R + + A+ + D ++ + D Sbjct: 3 IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTS-NTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRD 113 +RI N D SE Q CGNG+RC+ +F+ R S+ +T+ G++ + D Sbjct: 62 MRIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILAD 121 Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 G + VDMG+P L IP L ++ +K+ + + VSMGNPH I FV Sbjct: 122 GQVKVDMGQPRLLAVEIPTTLTKADEKVVNVPLSVAEQSWKVT----CVSMGNPHCITFV 177 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E D+ LA G HP F E N +V + L +R WERG G T ACG+ ACA Sbjct: 178 E-DVAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACA 236 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 VVA +R+V+V++ GG L+IEW + ++M+G A++ + G+ Sbjct: 237 VVVAGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQ 283 >gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12] gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12] Length = 287 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 7/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 V F KM G GN +V+D + + + L+ DQI+L+ VD Sbjct: 1 MQVAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLADRHFGVGADQILLVEAAPSPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VDM Sbjct: 61 GYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D +P A D + P++ V+SMGNPHA+ V DD+ Sbjct: 121 GAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLAGATAWVSVLSMGNPHAVQRV-DDVDTA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA Sbjct: 180 PVLRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 AV V+ GG L I W V MTG A ++G +D+ Sbjct: 240 HGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284 >gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] Length = 277 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 144/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ +A LS D +++I + A D + Sbjct: 1 MKFTKMHGLGNDYVYVNCFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + + + ET+ G+ L K+ + I V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L + IP+ D + + + + VSMGNPHA+ FV DD+ Sbjct: 119 DMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMTG----VSMGNPHAVIFV-DDVKGL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L + G H F + VN ARV E++++R WERG G T ACG+ ACA VA Sbjct: 174 ELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVACIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG LLIEW + + V+MTG A ++G++ I Sbjct: 234 NGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277 >gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 274 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++M G+A ++G + + Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDGFIKL 274 >gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] Length = 282 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G+GN +VID + + I FDQ++++ Q VD Sbjct: 3 TLKFSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFG 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC V+F+T + ++ +T +GI+ + N DG ++V+MG Sbjct: 63 YRIFNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMG 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + +P + +I V L +V+MGNPHA+ +V ++ + Sbjct: 123 QPRFAPEDVPFVLRSGEQVGAVSYI-VVKDLDSAEMSLVNMGNPHAVMWV-GNVDDAPVE 180 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S+G L H F + VN+ +V + LR +ERG G T ACG+ ACA+VVA L Sbjct: 181 SWGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRLGA 240 Query: 242 T--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W + + V M G A + G+L Sbjct: 241 VASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGELT 281 >gi|255645761|gb|ACU23373.1| unknown [Glycine max] Length = 359 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + S A+ + D ++ + + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPGIN-G 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N D SE + CGNG+RC +F L + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEP+L +P +K D V + + VSMGNPH + F + Sbjct: 190 RVDMGEPVLKALDVPTKLPANK-DNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +V A+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] Length = 287 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 11/284 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A+ D ++ D + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+T + ++ T G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP S + + + + + VSMGNPH I FV DD+ Sbjct: 122 MGLPRLLAAEIPTTLSENNLKVIDVPLEVAGQVL--SVTCVSMGNPHCITFV-DDVASVP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +R V+V++ GG L IEW + ++MTG A+ ++G+L Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFP 282 >gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] Length = 274 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + VVSMGNPH + VE D+ ++ Sbjct: 121 PDFEPQHVP----FRAIKAEKTYIIRAIERTVLCG-VVSMGNPHCVIQVE-DVDTAEVEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 N V V + GG L I W ++M G A +EG + + Sbjct: 235 NSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274 >gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 279 Score = 348 bits (893), Expect = 6e-94, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 139/286 (48%), Gaps = 12/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + + F+KM G+GN +VID + +T + I L+ FDQ++L+ D Sbjct: 1 MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF L ++ T +G +V + + Sbjct: 61 LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG PI + +P A F+K R + V VVSMGNPH + VE D+ Sbjct: 121 VNMGGPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] Length = 276 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVYFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G ++ D I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I V L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FRAKQKEKTYIMRVGEKTLFCG-AVSMGNPHV-VTVVDDVDSAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 ENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQLS 275 >gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4] Length = 277 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ ++ +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKVENPAEVSIKVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118 I N DGSE + CGNG+RCV +++ T ET G+L + + + V Sbjct: 59 HIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPI IP+ DK+ + +G N VSMGNPHA+ FV DD + Sbjct: 119 DMGEPIHTPAEIPVVADGDKVIDEPIEVGGK----TWNMTCVSMGNPHAVVFV-DDTASF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L ++G L H F + N ++ S ++R WERG T ACG+ CA V+A Sbjct: 174 PLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 KT V V + GG L IE+ ++NHVFMTG A + + G++++ Sbjct: 234 NGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277 >gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437] Length = 280 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 14/287 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F KM G+GN +V+ A D ++ + + D + Sbjct: 1 MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFLLPSRAG--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISV 118 RI+N DGSE + CGN +RCV ++ R+ +K ET G+ + DGS I V Sbjct: 59 RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL+ +P+A +++ IG + F VSMGNPHA+ FV DD + Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIGEESFRFT----AVSMGNPHAVIFV-DDAAAF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + ++G L HP+F N+ V S L++R WERGVG T ACG+ ACAS+VA+ Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 +R V++ GG L IEW + ++ V+MTG A+ +EG+ + +G Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWNEGSG 280 >gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN] gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN] Length = 299 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 9/287 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D + +P A + + + P++ + R VVSMGNPHA+ V DD+ + Sbjct: 121 GTPVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 240 RGLLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286 >gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] Length = 280 Score = 347 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63 + F KM+ GN + +D + +S D ++LI D D Sbjct: 1 MRFTKMQAAGNDYVYMDTLKAPISSPEALARRISDRHFGVGSDGLILICPPSDPGEADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN----RDGSIS 117 +R+ N DGSE + CGNG+RCV +++ ++ ET+ G+L + + + +++ Sbjct: 61 MRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K IP++ + + + N VSMGNPHA+ F+ + + Sbjct: 121 VDMGEPRLAPKDIPVSGPGEDFINRPLRVQGR----VWNVTAVSMGNPHAVVFMHG-IDN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL+ G HP+F N V L +R WERG G T ACG+ ACASVVA+ Sbjct: 176 LDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAAV 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 T R V +K+LGG L IEW + NHVFMTG A + G+ Sbjct: 236 LTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGE 277 >gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01] gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01] Length = 276 Score = 347 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 274 Score = 347 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + +P A F+K R + V VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] Length = 276 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] Length = 287 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 9/286 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N++ + AL+ DQ++L+ VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALADRHFGVGADQLLLVEKPTVEGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + + +P A + R+ + P++ + R VVSMGNPHA+ V DD+ + Sbjct: 121 GAPVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W ++ + M G A ++G++++ Sbjct: 240 RGLLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIEL 285 >gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] Length = 276 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++ F KM G GN +V+D+ + I L+ DQ++++ VD Sbjct: 1 MLLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ ++ + ET GI+ + + + VDM Sbjct: 61 RYRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PIL+ + IP FD + + V L +SMGNPH++ V DD+ ++ Sbjct: 121 GAPILEPQKIP----FDAPEEATSYPLQVEENVLEIG-ALSMGNPHSVCRV-DDVDSINI 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP F + N ++ S + LR +ERGVG T ACG+ ACA+VV Sbjct: 175 EHLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVYGLSRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I W V MTG +EG + I Sbjct: 235 WLRDTVTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276 >gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] Length = 278 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 140/279 (50%), Gaps = 13/279 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K G+GN ++ID R I AI + D ++ D +R Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVK-QTDYTMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSE + CGNG+RC+ +F+ + + T GI+V + DG ++VDMG+P Sbjct: 64 IFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123 Query: 124 ILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 L IP LA + DK+ +G + VSMGNPH I FVE D+ DLA Sbjct: 124 RLLASEIPTTLANADDKVVDQLLEVGGKSWFVT----CVSMGNPHCITFVE-DVTAIDLA 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +P+F E N +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 179 KIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQN 238 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R V+V++ GG L IEW + ++MTG A+K + G + Sbjct: 239 NERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277 >gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] Length = 287 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN VID + + I A FDQ++L+ D Sbjct: 2 AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++VDM Sbjct: 62 RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L IP + + H N + + +V+MGNPHA+ V DD + Sbjct: 122 GKPRLRPSEIPFLPAEGAAEDALRHDIAANGAAV-SVGLVNMGNPHAVLTV-DDTDAAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G L HP F E N+ +V + LR +ERGVG T ACG+ ACA+VV L Sbjct: 180 ATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHGVRLG 239 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W + V MTG A+ ++G + Sbjct: 240 LLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVIS 281 >gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] Length = 283 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 13/286 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +V++ I + D I+L+ D Sbjct: 3 KMKFTKMHGLGNDFIVVNGFKEDVRIIFKKAEKICDRHVGIGADGILLVLPSDK--CDLK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL----VAKENRDGSIS 117 +RIIN DGSE CGNG+RC R+ + + S T ET+ G++ + K++R S+ Sbjct: 61 MRIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVR 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG L K IP+A + ++ D I + +F VSMGNPH + FV DD+ Sbjct: 121 VDMGCYSLQKKDIPVAGNPNEEAVD-LEISVDDRVF--KFTGVSMGNPHCVIFV-DDVES 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + FG ++ +HP+F + N+ + L +R WERG GLT ACG+ ACAS VA+ Sbjct: 177 FPVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAY 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V+V + GG L IE N V+MTG A + + G +D+ Sbjct: 237 KKGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDLSA 282 >gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] Length = 387 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 11/289 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 100 KLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADF 159 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 160 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 219 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + +P A D R + P+ R VSMGNPHA+ V DD Y Sbjct: 220 GAPVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVV-DDAEAY 278 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 279 PVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIR 338 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 339 RGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387 >gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] Length = 270 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 109/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D R D I A S FDQ++ I D +D DAF+R+ N Sbjct: 1 MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----GSISVDMGEPIL 125 DG V++CGN +RCV +L K+ +T+ G A+ R G+ S+DMG+P L Sbjct: 59 DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPL+ + + +GP + P VSMGNPH +FFV DD+ D+ + G+ Sbjct: 119 DWRDIPLSEEMNTAKLE-LKVGPYDAPLYHTPVAVSMGNPHCVFFV-DDIATVDVKATGS 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F E VN+ A++ +++ +R WERG G+T ACG+ ACA++VA+ T RA Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG L I W +N+HV MTG + E+EG L Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270 >gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR] gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR] Length = 277 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN ++I+ ++ N A+ + D ++ I + A D Sbjct: 1 MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETA--DIQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----GSIS 117 +RI N DGSE + CGN +RC R+L +K+++ ET+ GI + + + + Sbjct: 59 MRIFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L+ IP+ K+ + + N VSMGNPH + FV D+ Sbjct: 119 VDMGEPELERGRIPMLGGPGKVVAEPLPVNG----STYNVTCVSMGNPHCVIFV-DNAED 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y +A+ G + H F N+ +V + + +R WERG G+T ACG+ ACAS VA+ Sbjct: 174 YPVAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAH 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R V V + GG L I W +NHV+M G A ++G Sbjct: 234 LNGFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKGT 274 >gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] Length = 278 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 14/285 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + F KM G+GN +VI+ ++T I L+ FDQ++++ ++ Sbjct: 1 MKLQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DG EV+ CGNG RC RF+ + + ET RGI+ +G +S Sbjct: 61 -DFRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVS 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P + IP + +M IG VS+GNPHA+ + D+ Sbjct: 120 VNMGVPQFEPAEIPFQAA-QRMPVYPLQIGDK----TIEISAVSIGNPHAVQIIP-DIDL 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + HP+F E VN ++ + LR +ERG G T ACG+ ACA+VV Sbjct: 174 APVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAAVVCGI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V M GG L I W + V+MTG A +EG +D+ Sbjct: 234 LRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278 >gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] Length = 287 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V D ++T++ ++ DQI+++ Q+ + D Sbjct: 1 MKLKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG R RF+T + R ET GI+ + ++G+++V+M Sbjct: 61 RYRIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPV-----NHLFLRNPFVVSMGNPHAIFFVEDD 174 G+P IP A I P+ L +VSMGNPHA+ VE+ Sbjct: 121 GKPEFSPDRIPFDASGLKGKPAGDDMIWPLALELPKGLQTIEVSLVSMGNPHAVQIVEN- 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ H F N + + S+ LR +ERG G T ACG+ ACA+VV Sbjct: 180 VDKAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 A + V+VK GG L I W+ N H V MTG A + G++D+ Sbjct: 240 AGIRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287 >gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] Length = 281 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 16/288 (5%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN ++++ G D+ + A D ++L+ D D Sbjct: 1 MHFTKVHGLGNDFILVNAGMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLDS--GVADV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 +RIIN DGSE + CGN +RCV ++L +++ ET+ GI+V + R ++ Sbjct: 59 RMRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L+ + IP+ + ++ + + VSMGNPH + FV DL Sbjct: 119 RVDMGAPRLERQEIPMLGTPGQVVNEPLQVNGQTFKIT----AVSMGNPHCVIFVP-DLS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G + HP F N+ +V S + + WERG G T ACG+ ACA A Sbjct: 174 VIPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACAVATAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T R+V+V + GG L IEW DN ++MTG A++ + G+ + G Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281 >gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688] gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688] Length = 277 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F KM+GIGN +VID ++T D I A+S DQ++++ Sbjct: 2 MKLEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAISDRHFGVGCDQLLIVEHATTPEAAF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+ + +++ ET RG++ + +G ++V+M Sbjct: 62 RYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P F+ + + H + SMGNPHA+ V D++ + Sbjct: 122 GPPSFLPADLP----FEAETIQSLYPLQLAHETVEVAIA-SMGNPHAVQLV-DNVDTAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 176 AEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V V GG L I W + V+MTG A + G + + Sbjct: 236 HLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277 >gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis] Length = 375 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 136/287 (47%), Gaps = 13/287 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + ++ F K G+GN +++D R + AI + D ++ + Sbjct: 87 KKDVLHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVN-G 145 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC+ F+ +S+ T G++V K DG + Sbjct: 146 TDYSMRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKV 205 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+PIL IP + PV+ + VSMGNPH + F D Sbjct: 206 MVDMGQPILTAANIPTKLPKREDGAVVKAELPVDGK-IWIVTCVSMGNPHCVTFSRKDCE 264 Query: 177 HYDL-----ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D+ G L H MF N ++ S L +R WERG G T ACG+ ACA Sbjct: 265 VLDVNSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAGACA 324 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 VVA+ ++ R V + GG L IEW++ +NHV+MTG A+K + G Sbjct: 325 LVVAAVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371 >gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] Length = 292 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 156/289 (53%), Positives = 196/289 (67%), Gaps = 1/289 (0%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+S+ V FAKM G+GN I+VIDMRG D +TS+A AL++ D T FDQIM IHD V Sbjct: 1 MEST-VPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGV 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D I I+N DGS Q+CGNG RCVV+ L S RKSFTF+T+ GIL A+E+ DG ISVDM Sbjct: 60 DYRIDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P W IPLA F R IGP++ L +P V++GNPHA+F+V+DD++ YDL Sbjct: 120 GRPEFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDL 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG LL HP+F E N+SIARV +LD+RTWERG GLT ACGSAACA+ V++ Sbjct: 180 ERFGPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTG 239 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 +T R V+V + GG L IEW +NNHV MTG A+ E+ G++D TG W Sbjct: 240 RTGRTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAWQAD 288 >gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15] Length = 292 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 1 MKLHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDM Sbjct: 61 RYRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P RD H +N VSMGNPHA+ V DD Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDTQHALQINGR-TAWLSTVSMGNPHAVQVV-DDAQA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W + V MTG A +EG LD+ K Sbjct: 239 RRGLLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] Length = 274 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 101/281 (35%), Positives = 139/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L + R T +G +V + ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R + V VVSMGNPH + V DD+ + Sbjct: 121 PIWEPAKIPFIANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQV-DDIEQATVH 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F E N+ ++ + LR +ERGVG T ACGS ACA+V Sbjct: 174 QLGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAVGIMQGV 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L IEW ++MTG A ++G + + Sbjct: 234 LDANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDGFIKL 274 >gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] Length = 276 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+G+GN +V+D + I L+ FDQ++++ Q D Sbjct: 3 MPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFHF 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGNG R V +++ + ++ T + A +G +++DMG+ Sbjct: 63 RIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IPL R +K G +++ VSMGNPH + V D++ + + Sbjct: 123 PRLEPAQIPL-RFAEKQTLYSIDAGGISYKV----GAVSMGNPHCVLKV-DNVEKAPVQT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L++H F N ++ +++ LR +ERGVG T ACG+ ACA+VV + T Sbjct: 177 VGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGLT 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + + VFM+G AK +EG+++I Sbjct: 237 DDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276 >gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] Length = 276 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDNTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275 >gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51] gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 287 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 101/284 (35%), Positives = 145/284 (51%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++ KM G+GN + ID +G + + L D ++++ A D Sbjct: 5 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS---- 115 A +RI+N DGSE + CGNG+RC R++ + + ET+ GIL + + G Sbjct: 63 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVE D Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVE-DY 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281 >gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116] gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116] Length = 276 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L R S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] Length = 283 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 136/287 (47%), Gaps = 16/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61 V+F K +G+GN ++ID R +T D A+ + D ++ + D Sbjct: 1 MRVEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPE-GDTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSI 116 +RI N DGSE + CGNG+RC+ RFL + ++ T+ G + DG + Sbjct: 60 YTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLV 119 Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VDMG P L + IP L D + + + VSMGNPH I FV DD Sbjct: 120 KVDMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWPVT----CVSMGNPHCITFV-DD 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L D + G HP+F + +N +V + L + WERG G T ACG+ ACA +V Sbjct: 175 LEAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 A K+ ++++ GG L I W + VFMTG A+K + G + Sbjct: 235 AGVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTGIYE 281 >gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] Length = 283 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++++ F+KM+G+GN +VID ++++ I + FDQ++++ + VD Sbjct: 2 TNLLKFSKMQGLGNDFMVIDGTQETITLSTEEIRFWANRYFGVGFDQLLMVENSAQGDVD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEVQ CGNG RC +F+ + + ET G++V G + V+ Sbjct: 62 FRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYITDQGWVRVN 121 Query: 120 MGEPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG P + +P + +D +RF IG VSMGNPHA+ V Sbjct: 122 MGAPNFLPEALPFDMPLESEQYELDVDGERFEIG-----------AVSMGNPHAVLRVA- 169 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL +A G + H +F E VN+ A + + LR +ERG T ACG+ ACA++ Sbjct: 170 DLGAAPVAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAETLACGTGACAAM 229 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKL 279 V L + + V+V + GG L IEW+ + V+MTG A +EG++ Sbjct: 230 VVLRNLGEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277 >gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T] gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T] Length = 277 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID ++T + A++ DQ++++ VD Sbjct: 1 MKLRFTKMHGLGNDFVVIDATRAPVDLTPARVKAIADRHFGVGCDQLLVVEPAARPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VRF+ + + ET GI+ + DG ++VDM Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L +P D + + +G VSMGNPHA+ V D+ + Sbjct: 121 GVPELAPAKVPFVSDSDAVVQ-PLQVGG----DTVAITAVSMGNPHAVQVVA-DVDAAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + +H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 175 VEQGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V GG L I W V MTG A +EG++++ Sbjct: 235 LLETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMEL 276 >gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] Length = 277 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 102/284 (35%), Positives = 154/284 (54%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D DN + + D ++LI A D + Sbjct: 1 MKFTKMQGLGNDYIYVDCTKNIIDNPSVVSKKVSDRHFGIGSDGLVLIMKSDIA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +++ +K+ T ET+ GI L ++N+ + V Sbjct: 59 RMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ K IP+ D+ + + N+ VSMGNPHAI +V DD + Sbjct: 119 DMGEPILESKQIPVDSEKDRFISESVEVDGYNYKVT----AVSMGNPHAITYV-DDTASF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + H +F + +N V +L +R WERG G T ACG+ A A +VAS Sbjct: 174 PLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I Sbjct: 234 NGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277 >gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] Length = 276 Score = 345 bits (887), Expect = 3e-93, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDNTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275 >gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] Length = 287 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 141/286 (49%), Gaps = 9/286 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + AL+ DQ++L+ VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + + +P A + R+ + P++ + R VVSMGNPHA+ V DD+ + Sbjct: 121 GLPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN---NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W N + M G A ++G++++ Sbjct: 240 RGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285 >gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] Length = 300 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 9/286 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + + AL+ DQ++L+ VD Sbjct: 14 MKLKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALADRHFGVGADQLLLVEKPTVDGVDF 73 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ ++S + G + +G + VDM Sbjct: 74 RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLVDM 133 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + + +P A + R+ + P++ + R VVSMGNPHA+ V DD+ + Sbjct: 134 GSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 192 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 193 PVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 252 Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W ++ + M G A ++G++++ Sbjct: 253 RGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIEL 298 >gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 16/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++F KMEGIGN + ID ++ + I LS D ++ I + Sbjct: 7 MKINFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--F 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115 + + N DGS + CGNG+RCV +F+ K + T ET +G+L + Sbjct: 65 QMDMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEM 124 Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMGEPIL L+P+ D+ + + + F VSMGNPH + +V DD Sbjct: 125 VTVDMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA V Sbjct: 180 ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 240 ASILNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286 >gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS] gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS] Length = 300 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 11/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 1 MRIRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC +RF+ + +T+ G++ + DG ++VDM Sbjct: 61 QYVIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVDM 120 Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G PI + +P A+ ++ +G + + V+SMGNPHA+ V D+ Sbjct: 121 GAPIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVV-DN 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G + HP F + VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 180 VDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 A L V V+ GG L IEW + V MTG A +EG +D+ Sbjct: 240 AGIRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288 >gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] Length = 296 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + VD Sbjct: 5 MQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAEGVDF 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G ++VDM Sbjct: 65 EYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVDM 124 Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P LD +P A + + + VSMGNPHA+ V DD Sbjct: 125 GAPQLDPAKVPFTNDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV-DD 183 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ H F + VN ++ + + LR +ERG G T ACG+ ACA+VV Sbjct: 184 VDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGACAAVV 243 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 280 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 16/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++F KMEGIGN + ID ++ + I LS D ++ I + Sbjct: 1 MKINFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--F 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115 + + N DGS + CGNG+RCV +F+ K + T ET +G+L + Sbjct: 59 QMDMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEM 118 Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMGEPIL L+P+ D+ + + + F VSMGNPH + +V DD Sbjct: 119 VTVDMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA V Sbjct: 174 ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 234 ASILNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280 >gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218] Length = 276 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I ++ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRMADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G +V D I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I V L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPSKIP----FRAKQAEKTYIMRVEEQTLFCG-AVSMGNPHV-VTVVDDVTTANVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 DTVTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQLS 275 >gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB] gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB] Length = 292 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 101/286 (35%), Positives = 152/286 (53%), Gaps = 15/286 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V F KM G+GN + I+ ++ +S D ++LI D + A D Sbjct: 14 KVVKFTKMHGLGNDYIYINAVLEDIKNPNEFSKFVSDRHFGIGSDGLVLILDSKIA--DF 71 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE + CGN +RCV +F+ +K T ET+ G+ V + +G + Sbjct: 72 KMRMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVVLV 131 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L+ IP+ + + N F VSMGNPHA+ ++E D+ Sbjct: 132 KVDMGEPTLEALKIPVISDKYPVINETIDSNGYNFKFT----CVSMGNPHAVTYIE-DVD 186 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +++L G L H F + N+ V + E+L +R WERG G T ACG+ ACA +V+S Sbjct: 187 NFELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGACAVLVSS 246 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + R +VK+LGG L++EW + NNHV+MTG A K +EGK+ + Sbjct: 247 VLNGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292 >gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44] gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44] Length = 296 Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + VD Sbjct: 5 MQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAEGVDF 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G ++VDM Sbjct: 65 EYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVDM 124 Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P LD +P A + + + VSMGNPHA+ V DD Sbjct: 125 GAPQLDPAKVPFTTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV-DD 183 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ H F + VN ++ + + LR +ERG G T ACG+ ACA+VV Sbjct: 184 VDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGACAAVV 243 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601] gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601] Length = 292 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 135/290 (46%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VDM Sbjct: 61 EYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDM 120 Query: 121 GEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P+LD +P + + + + VSMGNPHA+ V DD Sbjct: 121 GRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQLV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ HP F + VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 180 VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A L + V V GG L I W + VFMTG A +EG++DI Sbjct: 240 AGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289 >gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] Length = 292 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 135/290 (46%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VDM Sbjct: 61 EYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDM 120 Query: 121 GEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P+LD +P + + + + VSMGNPHA+ V DD Sbjct: 121 GRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQLV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ HP F + VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 180 VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A L + V V GG L I W + VFMTG A +EG++DI Sbjct: 240 AGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289 >gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357] Length = 269 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF L ++ T G +V D + V+MGEP + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P F ++ +I + VVSMGNPH + V DD+ + + G +L Sbjct: 121 SAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E N+ +V E + LR +ERG G T ACGS ACA+V V Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V++ GG L I W H ++MTG A ++G + + Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 269 >gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] Length = 278 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A D ++ Q+ D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ +F+ + + +T+ G++ + DG + VDM Sbjct: 62 MRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP DR + VSMGNPH I FVE D+ L Sbjct: 122 GIPRLLAAEIPTTLESP--DRKVVELPLEVAGQSWLVTCVSMGNPHCITFVE-DVSAIAL 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H +F + N ++ + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 ETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAGVLAG 238 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R +V++ GG L IEW + ++MTG A + + GK+ Sbjct: 239 KCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278 >gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881] gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881] Length = 282 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 136/284 (47%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F KM G+GN +VID + +D I L FDQ++++ + A Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSAD 62 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI+N DGSEV CGNG RC RF+ + ++ ET G + D ++ Sbjct: 63 ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP+ K + D + + V+ V +GNPH VE+ + + Sbjct: 123 VDMGAPRWAPDAIPMTA---KAEADSYFL--VSGTQAWEVGAVGLGNPHCTLLVEN-VDN 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G LL H F E VN+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 177 APVESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + AV+V + GG L + + + MTG A ++G ++I Sbjct: 237 RRGWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280 >gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] Length = 307 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 99/290 (34%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 15 AMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVD 74 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VD Sbjct: 75 FRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVD 134 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P RD H VN VSMGNPHA+ V DD Sbjct: 135 MGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDR-TAWLSTVSMGNPHAVQVV-DDTE 192 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W + V MTG A +EG LD+ K Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302 >gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424] gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424] Length = 281 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + + S A+ D ++ + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTS-QTDYQ 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ K KS+ +T+ G++ + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVTVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L +K+ + + L VSMGNPH I FVE D+ Sbjct: 122 MGLPRLLGSEIPTTLVSRTEKVIDQPIEVAGQSWLVT----CVSMGNPHCITFVE-DVKS 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G H F + N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 177 IALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 K++R +V++ GG L I W + + HV+MTG AK+ + G ++ Sbjct: 237 LTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYEM 281 >gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301] gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301] Length = 276 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 12/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +VI+ +T++ I L+ FDQ++L+ + A D Sbjct: 5 LHFTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC VRF+ + + + ET GI+ K +G ++V+MG Sbjct: 63 RIFNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L +P ++ V + VSMGNPHA+ V DD+ + + Sbjct: 123 PRLSPSEVPFIADAAA----NSYVLEVADQQI-TISAVSMGNPHAVQIV-DDVEIAPVVA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + HP F E VN ++ + LR +ERG G T ACG+ ACA+VVA L + Sbjct: 177 LGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQLGRL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V V GG L I W N V MTG A + G ++I Sbjct: 237 QSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276 >gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 289 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 213/288 (73%), Positives = 238/288 (82%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ SMV FAKMEGIGNKILV+DMR DNIT +AIN LST+DN FDQIM IH+ Q+ Sbjct: 1 MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM Sbjct: 61 DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDW+ IPLA+ FD D +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + FG LL + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288 >gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D] gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D] Length = 292 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 135/288 (46%), Gaps = 7/288 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 1 MKLHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDM Sbjct: 61 RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + +P +++ D + VSMGNPHA+ V DD + Sbjct: 121 GAPVFEAARLPFLPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIV-DDTEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 180 PVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W V MTG A +EG LD+ K Sbjct: 240 RGVLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDLDALK 287 >gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804] gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii] Length = 304 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 137/287 (47%), Gaps = 13/287 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D +IT + AL+ DQI+L+ D R Sbjct: 10 NFTKMHGAGNDFVVLDGVRQAIDITPERARALADRHFGIGADQILLVEPPTHPEADFRYR 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDMG Sbjct: 70 IFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDMGVT 129 Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 D +P A+ D + + P V++ NPHA+ V DD+ Sbjct: 130 RFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQV-DDV 188 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A+ G L+ +HP F+ VN +V S+ LR +ERG G T ACG+ ACA+V A Sbjct: 189 DAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAAVAA 248 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L ++W+ H+ MTG A + G++DI Sbjct: 249 GIRRGLLDSPVRVHTRGGTLTVDWN-GEHLRMTGPATSVFTGQVDID 294 >gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] Length = 283 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 101/284 (35%), Positives = 145/284 (51%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++ KM G+GN + ID +G + + L D ++++ A D Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS---- 115 A +RI+N DGSE + CGNG+RC R++ + + ET+ GIL + + G Sbjct: 59 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVE D Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVE-DY 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277 >gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] Length = 282 Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ +S D +++I+ + A D + Sbjct: 1 MKFTKMQGLGNDYVYVNCFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + + ET+ GI L ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L LIP+ +K+ + + + + VSMGNPH + +V DD+ + Sbjct: 119 DMGKPELKSDLIPIISENEKVIDEPIEVDGQVY----HMTGVSMGNPHTVIYV-DDVKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H F + +N ++++R WERG G T ACG+ ACA VAS Sbjct: 174 DLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + T+ V+VK+LGG L IEW NHVFMTG AK ++G +DI Sbjct: 234 NNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277 >gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] Length = 280 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 107/280 (38%), Positives = 155/280 (55%), Gaps = 10/280 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R ++ + A FDQ++ I AS DAF+R Sbjct: 4 PFLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVDMG 121 + N DG V++CGN +RCV +L +T+ G AK + G +SVDMG Sbjct: 62 VWNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPL+ + +R +GP++ P VSMGNPH +FFVE D+ D+ Sbjct: 122 APRLAWTQIPLSEEMNT-ERLELQVGPIDAPLYHTPCAVSMGNPHVVFFVE-DVAAVDVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+L+ HP+F EGVN+ A+V ++ +R WERG G+T ACG+ ACA++VA Sbjct: 180 RTGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ++R +V M GG L I W ++HV MTG + E+EG+L+ Sbjct: 240 SDRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279 >gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 297 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 136/295 (46%), Gaps = 17/295 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPADGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + R + +T+ G++ + DG ++VDM Sbjct: 61 EYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTVDM 120 Query: 121 GEPILDWKLIPL-----------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G P D +P A +D + + VVSMGNPHA+ Sbjct: 121 GRPRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHAVQ 180 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 VE D+ +A G L+ +H F + VN ++ + LR +ERG G T ACG+ A Sbjct: 181 LVE-DVDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGTGA 239 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 CA+V A L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 240 CAAVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294 >gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] Length = 285 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ D+ +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV DD+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE+ + NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114] gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114] Length = 276 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 139/279 (49%), Gaps = 10/279 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G ++ K D I+V+MGEP Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + IP F ++ ++ V+ L + VSMGNPH V DD+ YD+ + Sbjct: 124 VFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKY 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H F E VN ++ S + LR +ERG G T ACGS AC +V Sbjct: 178 GQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLG 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 238 EEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] Length = 292 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 99/289 (34%), Positives = 136/289 (47%), Gaps = 9/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 1 MKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDM Sbjct: 61 RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P RD H VN VSMGNPHA+ V DD Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNGR-TAWLSTVSMGNPHAVQVV-DDTEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 179 FPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W + V MTG A +EG LD+ K Sbjct: 239 RRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +V+D + N++ A D ++L+ + A D Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVD 119 +RIIN DGSE + CGN +RCV R+ + +K ET+ GI+ + + + VD Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PIL + IP+A + + + F VSMGNPHA+ FV D L + Sbjct: 119 MGRPILKPQEIPVAVEEEPV-NIPLEVLGQKFYFT----AVSMGNPHAVIFV-DSLAKIE 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L +G L+ HP+F N+ + S + + WERG G T ACG+ A A VVA L Sbjct: 173 LEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRIL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W V+MTG A+ ++G+ + Sbjct: 233 GHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGEYFL 274 >gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] Length = 307 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 99/290 (34%), Positives = 137/290 (47%), Gaps = 9/290 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 15 AMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPDVD 74 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VD Sbjct: 75 FRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVD 134 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P RD H VN VSMGNPHA+ V DD Sbjct: 135 MGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDR-TAWLSTVSMGNPHAVQVV-DDAE 192 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W + V MTG A +EG LD+ K Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302 >gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] Length = 276 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN ++ID IT + L+ DQ++++ + D Sbjct: 1 MRLRFTKMHGLGNDFVMIDAISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV++CGNG RC F+ R + ET G+L D ++V+M Sbjct: 61 RYRIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+L IP + + + + N VSMGNPHA+ V D+L + + Sbjct: 121 GVPVLAPAQIPFVTPHE---QPEYPLQLDNMEIT--ISAVSMGNPHAVTLV-DNLASFPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F VN + S + + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 175 KTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W V MTG AK + G++ + Sbjct: 235 LLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276 >gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] Length = 278 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D +D AI + + D ++LI A V + Sbjct: 1 MKFTKMHGAGNDYVYVDCFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHV--RM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + N+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P L IP++ D + + +I N SMGNPH + FV DD+ Sbjct: 119 VNMGKPRLTRGEIPMSGPADARVVSEPLNIL----HTTFNITCASMGNPHCVIFV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 174 NFQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T++ + + GG L +EW ++ ++MTG A + + G++ I Sbjct: 234 ALNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278 >gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] Length = 308 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 9/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID N+ I L+ + FDQ++LI +D Sbjct: 30 MRIKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGIDF 89 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV CGNG RC+ F + + T T + + N D S+ V+M Sbjct: 90 NYRIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVEM 149 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ IPL+ + + H +S+GNPHA+ V+ D+ + Sbjct: 150 GIPQLNPAAIPLSAEHQAAEYQ----LELQHGQTATMHAISVGNPHAVLLVK-DVETAPV 204 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G+ ++ HP F N+ ++ + + + LR +ERG G T ACGS A A+V H Sbjct: 205 PTLGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLYH 264 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + ++ V+V + GG L+I+W D + +TG A +EG+L Sbjct: 265 RLDKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQLSP 306 >gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] Length = 276 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM+G+GN +V+D+ N+ ++ + L+ DQ++++ VD Sbjct: 1 MLLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLADRHFGIGCDQLLVVETPMQPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC +F+ + + ET GI+ D I V+M Sbjct: 61 RYRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P+L+ IP S + VS+GNPHAI VE D+ + Sbjct: 121 GKPLLEPADIPFTASKRANTYTLLVDDEE-----VSISAVSVGNPHAIITVE-DIDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F + VN+ +V S + ++LR +ERG G T ACGS ACA++V+ Sbjct: 175 SILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAAMVSGQLQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ ++ + GG L +EWH H V MTG A +EG++ + Sbjct: 235 LLDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276 >gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] Length = 287 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V++ N+T + L+ DQI+L+ + VD Sbjct: 1 MKLKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG R +F+T ++ ET GI+ +DGS++VDM Sbjct: 61 KYRIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDD 174 G P+ + IP + D++ D ++ ++ VVSMGNPHA+ V DD Sbjct: 121 GNPVFETSRIPFLTKGLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ H F E VN + S+ LR +ERG T ACG+ ACA+VV Sbjct: 180 VNRAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + V+VK GG L I W H V M+G A + G++++ Sbjct: 240 SGIRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287 >gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] Length = 292 Score = 342 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLADRHFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + + + +T+ G++ + DG ++VDM Sbjct: 61 EYVIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRD------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P D +P + + VVSMGNPHA+ V+ D Sbjct: 121 GRPEFDAARVPFDAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGNPHAVQLVQ-D 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ HP F VN ++ + LR +ERG G T ACG+ ACA+V Sbjct: 180 VDTAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLACGTGACAAVA 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282 A L + V V+ GG L I W + + VFMTG A ++G++++ Sbjct: 240 AGIRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289 >gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1] Length = 285 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 141/287 (49%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ D+ +I D ++ I D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS--GKADFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV DD+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE+ + NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] Length = 291 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 11/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 1 MRIPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG+EV+ CGNG RC RF+ + + + +T G++ + N DG ++V+M Sbjct: 61 EYLIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMD------RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P+ + IP + + + + H VVSMGNPHA+ V DD Sbjct: 121 GAPVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVV-DD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ H F + VN ++ + LR +ERG G T ACGS ACA+VV Sbjct: 180 VDTAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 A L + V V+ GG L I W V MTG A + G++++ Sbjct: 240 AGIRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288 >gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 281 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID + +T + I +S + D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET G+L N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFVS 121 Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+PIL IP+ + + + F I N F VSMGNPH + FV DD Sbjct: 122 VNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNLKFT----AVSMGNPHCVIFV-DDCD 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ +HP+F + +N+ V + RTWERG G T ACG+ ACA VA Sbjct: 177 QFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAG 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K+ + V + + GG L I+W ++ +V MTG AK+ + G++++ Sbjct: 237 NLTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281 >gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] Length = 277 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM+ +GN +VID ++SD I LS DQ++L Q D Sbjct: 2 TKLRFTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDI 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 R+ N DG EV+ CGNG+RC+ RFL + ++ ET G+ + DG+I+V+M Sbjct: 62 RYRVFNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+L+ + IP + + + VSMGNPHA+ V DD+ + Sbjct: 122 GPPVLEPERIPFR---PTKQASEYALALEDKRI--MIGAVSMGNPHAVLQV-DDIDSAPI 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +FG L+ +H F + VN+ +V S + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 176 DTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRLRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L+I W + V+MTG A +EG++ + Sbjct: 236 LLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277 >gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2] gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2] Length = 276 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 147/283 (51%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V + + + A+ D ++ I A D + Sbjct: 1 MEFTKMNGLGNDFIVWYGHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGI----LVAKENRDGSIS 117 RIIN DGSE + CGN +RC +++ + R+ T ET+ G+ L + + Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP + + G F VSMGNPH + +VE D Sbjct: 119 VDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRFT----AVSMGNPHCVIYVE-DAPS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG++ Sbjct: 234 LNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276 >gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] Length = 276 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 +V V + GG L I W +FMTG A ++G+L Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] Length = 278 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + I+ +N AI D ++LI A D + Sbjct: 1 MKFTKMEGLGNDYVYINCFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKA--DFTM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + S + ET+ GI V K+ + ++V Sbjct: 59 DMYNADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDMVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL +P+ +++ ++ + V++ + VSMGNPHA+ FV DD H+ Sbjct: 119 DMGAPILKADQVPVRSDKEQVIDEKITVAGVDY----HMTCVSMGNPHAVMFV-DDTEHF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H +F VN +V ++ +R WERG G T ACG+ ACA+ VA Sbjct: 174 PLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVACVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 KT+ V+VK+LGG L+I + +NN V+MTG A+ ++G+ D Sbjct: 234 NGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276 >gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] Length = 292 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 15/283 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S + F KM+G+GN + ++ +N + A+ + + D ++LI+ + A D Sbjct: 14 SRMKFTKMQGLGNDYVYVNGFEERIENPSEMAVKVSNRNFGVGSDGLILINPSEKA--DF 71 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 + + N DGS + CGNG+RCV +++ + + ET+ GI L ++ + + Sbjct: 72 EMEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGKVVLV 131 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG PIL IP+ + + + VSMGNPHA+ F+ DD+ Sbjct: 132 RVDMGSPILTPAQIPVIADEAEAVAVPILVDETEY----QMTCVSMGNPHAVIFM-DDIE 186 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 H ++ G H F VN +V + +R WERG G T ACG+ ACA VA Sbjct: 187 HLEIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGACAVAVAC 246 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+VK+LGG LLIEW + N ++MTG A+ ++G Sbjct: 247 ILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDGV 289 >gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] Length = 302 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 135/288 (46%), Gaps = 10/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D + + L+ DQI+ + +D Sbjct: 1 MRIRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLADRHFGVGADQILSVRPSPAPGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG+EV+ CGNG RC RF+ R ++ S +T+ G++ + DG ++VDM Sbjct: 61 EYVIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVV-----SMGNPHAIFFVEDD 174 G PI D +P A +D+ H + V SMGNPHA+ V D Sbjct: 121 GAPIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIVA-D 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G + +H F VN +V + + + LR WERG G T ACG+ ACA+VV Sbjct: 180 VDAAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAVV 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A L V V GG L IEW + V MTG A + G++D+ Sbjct: 240 AGIRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVP 287 >gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] Length = 282 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + + + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L IP+A + ++ F N VSMGNPH + FV DD+ Sbjct: 119 VNMGVPRLKRAEIPMAGEPADGQIVSQPLNILHTTF--NITCVSMGNPHCVIFV-DDVES 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 176 FQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW D+ ++MTG A + + G++D+ Sbjct: 236 LNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDL 279 >gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329] Length = 276 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 +V V + GG L I W +FMTG A ++G+L Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] Length = 289 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 11/290 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P A D R + P+ R VSMGNPHA+ V DD Sbjct: 121 MGAPVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289 >gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] Length = 294 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 149/290 (51%), Positives = 193/290 (66%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A L+ D T FDQIM IHD + Sbjct: 2 ASTTPFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGTAF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DG+ Q+CGNGMRCVV+ L + +KSFTFET+ GIL A E+ DGSISVDMG Sbjct: 62 FIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDMGM 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELDR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HP+F E N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+ +T Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTRRT 241 Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+VS+ GG L +EW D++HV +TG A+ E+ G D TG W + E Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291 >gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] Length = 280 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 6/280 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +V F KM G+GN +V+D+ +T + L FDQ++++ + +D Sbjct: 1 MLVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV++CGNG RC +F+ + + +T G + K + D + V+M Sbjct: 61 RYRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PIL +P + +SMGNPH + V D + + Sbjct: 121 GAPILAPVDVPFQADQKATTYA-IDVPLSQGDQQVELSAISMGNPHGVLIV-DSTENAPV 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H F N+ +V S ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 179 ETLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRG 238 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V+V + GG L IEWH + V MTG A +EG++ Sbjct: 239 VLDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQI 278 >gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25] Length = 276 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 96/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGEKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275 >gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] Length = 276 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T++ + L+ DQI+L+ DAS D Sbjct: 1 MRLKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLADRHFGVGCDQILLVEKAHDASADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG + V+M Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+ D IP + ++ + +VSMGNPHA+ V DD+ + Sbjct: 121 GAPVFDAARIPFSGGTIEVMQPLVVADQ-----TLMVSIVSMGNPHAVQVV-DDVERAAV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F + VN ++ + + LR +ERG G T +CG+ ACA+VV+ Sbjct: 175 EVLGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + VSV GG L I W + V MTG A + G++++ Sbjct: 235 LLDSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276 >gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 281 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID +T + I +S D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET GIL N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121 Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P+L IP+ ++ + + IG N F VSMGNPH + FV DD Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSD 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 177 EFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAG 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 237 NLTGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] Length = 279 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 137/280 (48%), Gaps = 15/280 (5%) Query: 6 VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN + ++ ++I S AI D ++LI + A DA Sbjct: 1 MKFTKMHGAGNDYVYVNCFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKA--DAQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE + CGNG+RCV +++ +++ ET G+L G + Sbjct: 59 MRMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL IP D +G VSMGNPH I FV D++ Sbjct: 119 VNMGKPILTSAEIPTLLPGDPPVNAPLEVGAQTLEVT----CVSMGNPHCITFV-DEVND 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + HPMF VN V S L +R WERG G T ACG+ ACAS VA Sbjct: 174 HWVHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ R V + + GG L +EW DN+ VFMTG A + ++G Sbjct: 234 LTGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQG 273 >gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ] gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ] Length = 278 Score = 341 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D DN AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + + T ET GIL + EN+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVR 118 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L + IP+ ++ + + VSMGNPH I +V DD+ Sbjct: 119 VNMGPPRLSREEIPMNGTPAAQVVAEELTVLDKTFKIT----CVSMGNPHCIIYV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ +A++G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 174 NFPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGASAVCVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T+R + + GG L +EW +N VFMTG A + + G++ + Sbjct: 234 VLNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278 >gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] Length = 276 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62 +V+F+KM G+GN LV+D + ++ + I + + FDQ++++ D +D Sbjct: 1 MLVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC +F+ + + T G + RDG+ISV M Sbjct: 61 HYRIYNADGSEVGQCGNGARCFAKFVRMKGLCNKHKIKVSTSTGKMNLHIERDGNISVTM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + K IP + + + + L VSMGNPH + V D + D+ Sbjct: 121 PVPQFEPKKIPFTAQKTE---GTYILRSESETVLCG--AVSMGNPHCVVTV-DSVAEADV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L+ H F E N+ + S + LR +ERG T ACGS ACA+VV Sbjct: 175 ESLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQK 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + V+V++ GG L I W H V M+G A ++G++ I Sbjct: 235 KLAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276 >gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] Length = 278 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + +D AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + +K + ET GIL + N+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L IP+ K+ + +I + SMGNPH + FV DD+ Sbjct: 119 VNMGRPRLTRSEIPMTGEAGAKVINEPLNIL----HTTFHITCASMGNPHCVIFV-DDVE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ + +G ++ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 174 NFQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ ++MTG A + + G+++I Sbjct: 234 ALNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278 >gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 309 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 22 KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R R+S + ++G++ +G + VDM Sbjct: 82 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVVDM 141 Query: 121 GEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P S D + P++ R VSMGNPHA+ V DD+ Y Sbjct: 142 GAPVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 261 RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] Length = 289 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 11/290 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P A D R + P+ R VSMGNPHA+ V DD Sbjct: 121 MGAPVFAPEQVPFDASGLDGRTEGRDTLWPLEIGGRTRWISTVSMGNPHAVQVV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289 >gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] Length = 294 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 16/295 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE 172 MG P+ +P A D R + P++ R VSMGNPHA+ V Sbjct: 121 MGAPVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV- 179 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+ Sbjct: 180 DDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAA 239 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 V A + V+V GG L I W + + M G A +EG++D+ Sbjct: 240 VAAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDLTA 294 >gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] Length = 295 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 8/284 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ + G + VDM Sbjct: 61 SYRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP ++ +H+ +V +MGNPHA+ V DD+ D+ Sbjct: 121 GKPKFEPSEIPFTPRATTKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKV-DDVLDADV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 178 ESLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREG 237 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V ++ GG ++I+W V MTG +EG Sbjct: 238 WLDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVFSPD 281 >gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] Length = 277 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 152/284 (53%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + S+ +S D ++LI Q D + Sbjct: 1 MKFTKMQGLGNDYIYVNCFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQ--MCDFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ ++ ET+ GI + K+N+ + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ IP+ + + I VSMGNPHA+ +V DD+ + Sbjct: 119 DMGEPILEPAKIPVDSNKELFVSQPVVIDGREFKVT----CVSMGNPHAVTYV-DDVEKF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + + ++ + +N +V ++L +R WERG G T ACG+ ACA +V+S Sbjct: 174 PLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGTGACAVLVSSVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+ Sbjct: 234 NDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277 >gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815] gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815] Length = 286 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 10/286 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T + AL+ DQ++++ VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ ++S + +G++ +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P + D + VN R VVSMGNPHA+ V DD+ Sbjct: 121 GAPVFEPVQVPFDASGVEARREGNDTLYALEVNGE-TRWVSVVSMGNPHAVQVV-DDVEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FPVLVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W+ + + M G A +EG++++ Sbjct: 239 RRGLLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIEL 284 >gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629] Length = 285 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 140/287 (48%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ + +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLGDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ + + ET GI L +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV DD+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE+ NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284 >gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 309 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 140/287 (48%), Gaps = 11/287 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 22 KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 82 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVVDM 141 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P A D R + P++ R VSMGNPHA+ V DD+ Y Sbjct: 142 GAPVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 309 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 22 KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 82 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDM 141 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P A D + P++ R VSMGNPHA+ V DD+ Y Sbjct: 142 GAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1] Length = 280 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 103/274 (37%), Positives = 150/274 (54%), Gaps = 8/274 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D+R +T A++ DQ+++I + DA++ Sbjct: 8 PFLKMHGLGNDFVVVDVRRSGFVLTPAMARAIADRRTGLGCDQVVVIETARSGLSDAWMS 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGS +CGN RCV L + ET G+L A+ D ++VDMG L Sbjct: 68 LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPLA+ D + + L +P VSMGNPHA+FFV DD+ DLA+ G Sbjct: 128 DWREIPLAKPVDTLHM------GIGIGSLTDPVGVSMGNPHAVFFV-DDVAAIDLAALGP 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F E N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+ T R Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + GG L IEW ++HV MTG EG+L Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274 >gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] Length = 281 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 146/288 (50%), Gaps = 16/288 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M+ M F KM+G+GN + ++ ++ ++ A+ D ++LI+ + A Sbjct: 1 MEKKM-KFTKMQGLGNDYVYVNCFKEKIEDPSALAVRISDRHFGVGSDGLILINPSKVA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113 D + + N DGS + CGNG+RCV +++ +++ + ET+ GI + + Sbjct: 59 -DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIENGKV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VDMG PIL IP+ ++ + + + +SMGNPHAI +V D Sbjct: 118 AKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYR----MTCISMGNPHAIVYV-D 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + + G L KH F VN +V ++++R WERG G T ACG+ ACA+ Sbjct: 173 DVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGACATA 232 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 VA T V+VK+LGG L IEW + N VFMTG AK ++G + Sbjct: 233 VACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDGVWE 280 >gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] Length = 281 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID +T + I +S D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET GIL N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121 Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P+L IP+ ++ + + IG N F VSMGNPH + FV DD Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSD 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 177 EFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAG 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 237 NLTRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] Length = 295 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 141/284 (49%), Gaps = 8/284 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ +R G + VDM Sbjct: 61 SYRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP ++ +H+ +V +MGNPHA+ V DD+ D+ Sbjct: 121 GKPKFEPSEIPFTPRAITKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKV-DDVLDADV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA+V Sbjct: 178 ETLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREG 237 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V ++ GG ++I+W V MTG +EG Sbjct: 238 WLDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVFSPD 281 >gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] Length = 277 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 138/282 (48%), Gaps = 17/282 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + + F KM G+GN +VID R + +T AL FDQ+ +I + Sbjct: 6 LSEPGLRFLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAE--G 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DGS+ +CGN RCV + + + T T RG L A+ DG +SV+ Sbjct: 64 ADFTLEFWNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVN 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PILD IP+A P+ +P V MGNPH +FFVE D D Sbjct: 124 MGAPILDPAAIPVAA------------DPLALPLTGDPVAVGMGNPHCVFFVE-DAETAD 170 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 ++ G + HP+F E N+ A + + L +R WERG G+T ACGS CA+ VA+ Sbjct: 171 VSGLGPKIEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLR 230 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V V + GG L I+W ++ V+MTG + +L Sbjct: 231 GLTGRRVIVDVDGGRLEIDWREDG-VWMTGPTALVFAAELSP 271 >gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666] gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666] Length = 299 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 12/291 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM+G GN +++D N+++ L+ DQI+ + +D Sbjct: 8 AMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGID 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC VRF+ + + + +T+ G++ + DG ++VD Sbjct: 68 FEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTVD 127 Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG P+ + IP A+ ++ + + V+SMGNPHA+ V D Sbjct: 128 MGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPHAVQLV-D 186 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L+ H F + VN +V S + LR +ERG G T ACG+ ACA+V Sbjct: 187 DVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGTGACAAV 246 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 VA + V V+ GG L IEW + V MTG A +E ++++ Sbjct: 247 VAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVP 297 >gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330] gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19] gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330] gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19] gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28] gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90] Length = 303 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] Length = 284 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 16/287 (5%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN ++++ +G D+ ++ A D ++L++D D Sbjct: 1 MYFTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYDS--GVADV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 ++I+N DGSE + CGN +RCV ++L +K+ ET+ GI+V + E ++ Sbjct: 59 RMKIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP ++ IP+ ++ + + +L VSMGNPH I FV DL Sbjct: 119 RVDMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYLVT----AVSMGNPHCIIFVP-DLE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G + HP F + N+ +V + + WERG G T ACG+ ACA VA Sbjct: 174 DISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T R V+V + GG L+IEW +N ++MTG A + + G+ + Sbjct: 234 VLNGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTVYN 280 >gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] Length = 303 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1] Length = 303 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] Length = 301 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 103/286 (36%), Positives = 150/286 (52%), Gaps = 13/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M F KM G+GN +V+D R ++T + + A+++ DQ++++ D Sbjct: 18 MSDRAWPFLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPC 77 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA + I N DGSEV +CGN RCV L + F+T G+L A+ ++VD Sbjct: 78 ADATMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 137 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG LDW+ IPLA + D + ++ L +P VSMGNPHA+FFV DD + Sbjct: 138 MGPARLDWREIPLAEAVDTLHL------GISAGPLADPVGVSMGNPHAVFFV-DDAEAVN 190 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234 LA G L H +F E N+ +A+V + + +R WERG G+T ACG+ ACA++V Sbjct: 191 LAQLGRGLEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLV 250 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ + R + + GG L IEW + HV MTG + G LD Sbjct: 251 AAARRGLSPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296 >gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] Length = 279 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 13/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K G GN ++++ ++ A+ D ++++ Q A D + Sbjct: 1 MQFTKWHGQGNDFVIVNGFQEKIEDYAQAAVKICDRHFGIGADGLVIVGPSQVA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE + CGN RCV R++ + T ET+ G + + + ++ V Sbjct: 59 RIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRTVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP L IP+ D + ++ + + + VSMGNPH I FV DD+ Sbjct: 119 DMGEPRLKRAQIPMIGEPDS---EAINVPLIVNDKTYDITCVSMGNPHCIIFV-DDVDEI 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +LA+ G L+ HP F N+ +V + + +R WERG G+T ACG+ A A++VA+ Sbjct: 175 NLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVAAVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 KT R ++ + GG L++EW ++NHV+M+G A + + G+ Sbjct: 235 NGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGEY 275 >gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] Length = 276 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 96/277 (34%), Positives = 137/277 (49%), Gaps = 7/277 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID N T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R VRF+T + +++ ET+ GI+ + +G I+VDMG PIL+ Sbjct: 61 DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120 Query: 128 KLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + +P K + + VVSMGNPHA+ V D+ + G Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVA-DVEEAPVREDGV 179 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 180 LIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSP 239 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V+ GG L+I W ++ V MTG A +EG+++I Sbjct: 240 VKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276 >gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae] Length = 269 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 131/273 (47%), Gaps = 10/273 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I LS FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF L ++ T G L + + V+MG P + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P F ++ +I + VVS+GNPH + VE D+ ++A G +L Sbjct: 121 NKVP----FKAQKSEKTYIIRTQQQTILCG-VVSIGNPHCVLQVE-DIDTAEVALLGPML 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 KH F E N+ +V E + LR ERGVG T ACGS ACA+V ++V Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKSVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V + GG L I W+ H +FMTG A ++G + Sbjct: 235 VDLPGGMLKIRWNGLGHPLFMTGPATHVYDGVI 267 >gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] Length = 295 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 12/293 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + F KM+G GN +++D ++ L+ DQI+ + Sbjct: 1 MPFMRIRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLADRHFGVGADQILTVRPSPGEG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D I N DG EV+ CGNG RC VRF+ + + + +T+ GI+ DG ++ Sbjct: 61 IDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVT 120 Query: 118 VDMGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 V+MG P+ + + IP ++ + + VVSMGNPHA+ V Sbjct: 121 VNMGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV 180 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + G L+ HP F VN +V S + LR +ERG G T ACG+ ACA Sbjct: 181 -DDVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACA 239 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 +VVA L + V V GG L IEW + V MTG A +E ++++ Sbjct: 240 AVVAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292 >gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] Length = 289 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 11/290 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ +P D R + P++ R VSMGNPHA+ V DD+ Sbjct: 121 MGAPVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 289 >gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4] gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4] Length = 276 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 131/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF L + S + T +G + DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRTGEKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E N ++ ++ LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FM G A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQLS 275 >gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] Length = 303 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 12/286 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G+GN + ++ + + +S D +++I+ + A D Sbjct: 6 KMKFTKMQGLGNDYVYVNCFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFE 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + + N DGS + CGNG+RCV +++ + + ET+ GI L K+ + + Sbjct: 64 MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVR 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176 VDMGEP LD + IP+ + DR + VSMGNPH + ++ D++ Sbjct: 124 VDMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYI-DNVQ 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ G H F + +N ARV +++++R WERG G T ACG+ ACA VAS Sbjct: 183 GLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACAVAVAS 242 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T R V +++LGG L IEW ++NHV+MTG A ++G++++ Sbjct: 243 ILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288 >gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] Length = 292 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 134/290 (46%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 1 MQIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ + R + +T+ G++ + DG ++VDM Sbjct: 61 EYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTVDM 120 Query: 121 GEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P D +P S +G + + VVSMGNPHA+ V D Sbjct: 121 GRPRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLV-GD 179 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ H F + VN ++ + LR +ERG G T ACG+ ACA+V Sbjct: 180 VDAAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAAVA 239 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 240 AGIRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289 >gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3] Length = 276 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ FAKM G+GN +V+D+ +++++ I L FDQ++L+ Q VD Sbjct: 1 MLLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLGDRNTGVGFDQLLLVETPQSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV+ CGNG RC RF+ + ++ +T G + K +D + VDM Sbjct: 61 RYRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP+L L+P H G VVSMGNPHA+ V DD+ + Sbjct: 121 GEPVLLPSLVPFDAPAQAPSYRLEHNGQ-----SYTIGVVSMGNPHAVIVV-DDVASAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +HP F N+ ++ + ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 VELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V+ ++ GG L I+W H+ M G +EG++ + Sbjct: 235 LLGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276 >gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] Length = 296 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 137/290 (47%), Gaps = 12/290 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + VD Sbjct: 5 MQIRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLANRHFGVGADQILTVRPAPSEGVDF 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC R++ R + +T+ G++ + + +G ++VDM Sbjct: 65 EYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRVTVDM 124 Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 G P LD +P A + + + VSMGNPHA+ V DD Sbjct: 125 GAPQLDPVKVPFSTEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQLV-DD 183 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ H F + VN ++ + ++LR +ERG G T ACG+ ACA+VV Sbjct: 184 VNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGACAAVV 243 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 A ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293 >gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14] Length = 276 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 138/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ ++ ++ AI D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + T ET+ GI L + + + V Sbjct: 59 AMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL IP+ DK + + + + VSMGNPHA+ +V DD+ + Sbjct: 119 DMGSPILTPAEIPVVAEGDKAVDEPILVDGKEY----HMTCVSMGNPHAVVYV-DDVNNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G H F VN +V ++ +R WERG T ACG+ ACA V+ Sbjct: 174 PIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSCIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 T V+VK+LGG L I+W + N V+MTG A ++G+L Sbjct: 234 NGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGEL 275 >gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 275 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ID + + AI D ++LI + Sbjct: 1 MKFTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDK--CSFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE Q CGN +RCV +++ ++ + T ET+ G+ L ++ + V Sbjct: 59 RMFNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+PIL K IP+ +K+ + + VSMGNPH + FVE + Sbjct: 119 NMGKPILLAKDIPVIWEKEKLIYETIDFSSEQWILT----AVSMGNPHVVIFVE-KVSRL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + HPMF E +N+ + SL +R WERG G T ACG+ ACA++VAS Sbjct: 174 DVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 K NR ++ +LGG L +EW + HVFMTG+A + G+ Sbjct: 234 NGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIGEF 275 >gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] Length = 276 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 134/279 (48%), Gaps = 10/279 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG+EV+ CGNG RC RF+ R + T +G + K D I+V+MGEP Sbjct: 64 IFNSDGTEVEQCGNGARCFARFVRMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ ++ L VSMGNPH V DD+ +YD+ + Sbjct: 124 QFEPNKIP----FKATQAEKTYLLRAEDKTLFCG-AVSMGNPHC-VTVVDDVDNYDVDKY 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H F E VN + S + LR +ERG G T ACGS ACA+V Sbjct: 178 GPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLE 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 238 EDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH] Length = 289 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 135/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD+ Sbjct: 121 MGAPVFEPARVPFDTSGLGGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDVE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] Length = 303 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] Length = 277 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +V+D + A D I+++ A DA Sbjct: 1 MHFVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCDRHFGIGADGIIIVLPSDIA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI+N DGSE + CGNG+RC +++ +K++ + ET+ GI+ + +G + Sbjct: 59 MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P + IP ++ + + +SMG PH + FV DD+ Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVDSQPYAIT----SMSMGVPHTVIFV-DDVDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + KHP+F + N++ V + + +RTWERG G T ACG+ +CAS VA+ Sbjct: 174 VDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAVAAA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +T RAV+V ++ G L I W +++ VFMTG A K ++G ++ Sbjct: 234 ITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276 >gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49] Length = 289 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 138/288 (47%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ R R+S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ +P A + R + P++ R VSMGNPHA+ V DD Sbjct: 121 MGAPVFAPAQVPFDAAGLEGRAEGRDTLWPLDVGGRTRWITTVSMGNPHAVQVV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287 >gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] Length = 303 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + + P + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] Length = 309 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 22 KLSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADF 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 82 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 141 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P A D R + P++ R VSMGNPHA+ V DD Y Sbjct: 142 GAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAEAY 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307 >gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] Length = 276 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G +V D ++V+MGEP Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIP----FKAKQTEKTYILRADDKTLFCG-AVSMGNPHV-VTVVDDVTTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W ++MTG A ++G+L Sbjct: 238 EKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQLS 275 >gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 334 Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 15/296 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQD- 57 +++ V F+K G+GN ++ID R + +T + L D ++ Sbjct: 39 LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109 A D +RI N DGSE + CGNG+RC+ +FL + KS + T+ G +V Sbjct: 99 SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 N DG+I+VDMGEP L+ +P + + V MGNPHAIF Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTTLEANAEHDSVVEQTLEANGKTWKCTAVGMGNPHAIF 218 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV D D G L H F N+ +V + L ++ WERG G T ACG+ A Sbjct: 219 FVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLACGTGA 278 Query: 230 CASVVASGCLHKT---NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA VA+ K ++ V V + GG L IEW + +N ++MTG A + G+ + Sbjct: 279 CALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETKV 334 >gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45] gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45] Length = 279 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 102/289 (35%), Positives = 153/289 (52%), Gaps = 19/289 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G+GN +V+D R +T + A++ FDQ+ LI + D Sbjct: 8 SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALIEP---GAGD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS +CGN RC+ R+L + R T T RG L+A++ G SV+MG Sbjct: 65 ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW IPLAR D ++ P++ P MGNPH FFVE D DL Sbjct: 125 QPQLDWHEIPLAREMDTLEL------PIDGA----PTATGMGNPHCTFFVE-DAEAVDLT 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 SFG + HP++ E N+ +A + + + +R WERG GLT A GS++CA+ VA+ Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R V++++ GG L ++W ++ V+MTG ++G + W++ Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF---SRAWLEAA 278 >gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] Length = 285 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 14/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN + ++ ++ +S D ++ IH A Sbjct: 4 RSDSMKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA-- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D + + N DG+E CGNG+RC+ +++ + + T ET GI L ++ + Sbjct: 62 DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVT 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDM P+L+ IP+ +K D+ I VSMGNPH + FV D Sbjct: 122 WVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGRE---YRITCVSMGNPHGVVFV-DS 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+ G + HPMF + VN +V ++ +R WERG G T ACG+ ACAS Sbjct: 178 VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAY 237 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 AS KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 238 ASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285 >gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 279 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN + ++ S+ +S D ++LI + D Sbjct: 1 MQMKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +++ N DGS + CGNG+RCV +++ + + ET+ GI L +E + + Sbjct: 59 EMKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG PI + IP+ D + + VSMGNPHA+ ++ DD+ Sbjct: 119 KVDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYR----MTCVSMGNPHAVVYL-DDIQ 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + ++ G HP F VN ARV E++++R WERG G T ACG+ ACA VAS Sbjct: 174 NMEIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGACAVAVAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 234 MVNGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277 >gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] Length = 281 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R + AI D ++ Q A D Sbjct: 3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ RF+ K+++ T+ G++ + D + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MGEPIL IP L S + + VSMGNPH I FVE D+ Sbjct: 122 MGEPILTATDIPTTLKDSNGQAVNQPLEVAGK----TWMVTCVSMGNPHCITFVE-DVAA 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G HP F + +N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 177 IALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +R +V++ GG L IEW +NH++MTG A ++G++ + Sbjct: 237 LTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281 >gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 278 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + S A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118 Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P K IP+ D + + + MG PH + FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGEPDSDAINTSIEVDGKEYKIT----SLLMGVPHTVLFV-DDVE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ + G + +H +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 174 KVDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 234 NLNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGEY 276 >gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu] Length = 289 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 11/290 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALANRHFGVGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + ++S E ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P + + R + P++ R VSMGNPHA+ V DD Sbjct: 121 MGAPVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAER 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + + G L+ +H F++ VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDLAA 289 >gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] Length = 289 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 15/289 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 ++ + + F KM+G+GN + ++ + +S + D +++I+ A Sbjct: 8 VRRNEMKFTKMQGLGNDYVYVNCFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA- 66 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRD 113 D + + N DGS + CGNG+RCV +++ +++ + ET+ GI L ++ + Sbjct: 67 -DFEMEMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKV 125 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VDMG P L + IP+ +++ + ++ + VSMGNPHA+ +VE Sbjct: 126 KLVKVDMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVE- 180 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ D+ + G H F VN +V ++++R WERG G T ACG+ ACA Sbjct: 181 DVKGLDIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVA 240 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VA T V+VK+LGG L IEW + + ++MTG A+ ++G++++ Sbjct: 241 VACILNGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289 >gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] Length = 281 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F KM G+GN +VID + +D I L+ FDQ++++ Q Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GD 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI+N DGSEV CGNG RC RF+ + +KS ET G + D I+ Sbjct: 62 ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQIT 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP+ K + D + + V+ + V +GNPH VE+ + Sbjct: 122 VDMGAPRWAPDAIPMTA---KAEADNYFL--VSGTQAWDVGAVGLGNPHCTLLVEN-VDT 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G LL H F E N+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 176 APVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L + + + MTG A ++G ++I Sbjct: 236 RRDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEI 279 >gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264] Length = 289 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium] Length = 276 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F KM+GIGN +V+D + I+ L+ FDQ+++I Q D Sbjct: 3 VPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADFHF 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGNG R V +++ + ++ T + +G I+++MG+ Sbjct: 63 RIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ + IPL + + I VSMGNPH + VE D+ + Sbjct: 123 PRLEPEKIPLRF---AQQSETYMIDA--EGIRYKIGAVSMGNPHCVLQVE-DIDKAAVGK 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L+ H F N+ +V + LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 VGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVAGRLQKIL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W V+MTG AK +EG++D+ Sbjct: 237 DEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276 >gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans] Length = 276 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID + T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDMG PIL Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120 Query: 128 KLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +P S D + V+SMGNPHA+ V D H + G Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGE-THWISVLSMGNPHAVQVVA-DADHAPVREDG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 179 VLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGLLAS 238 Query: 245 AVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+ GG L I W +N V +TG A +EG++++ Sbjct: 239 PIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276 >gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1] gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1] Length = 300 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18] gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18] Length = 276 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + K T ET GIL + +++ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKVR 118 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L K IP+ +K+ + +I + SMGNPH + FV DD+ Sbjct: 119 VNMGPPRLTRKEIPMLGNPDEKVINEPLNIL----HSTFHITCASMGNPHCVIFV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + +G ++ H MF N+ +V S + RTWERG G T ACG+ + A A Sbjct: 174 KFPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVTAAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 234 VLNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276 >gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] Length = 277 Score = 337 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 148/284 (52%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K+ G+GN +V++ ++ A D ++L+H A D Sbjct: 1 MHFVKVHGLGNDFVVVNAMTETLPADLPELARRVCHRYFGIGADGLVLLHKSDAA--DLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 ++IIN DGSE + CGN +RCV ++ + +K+ ET+ GI L+ + I Sbjct: 59 MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP+ S ++ + ++G VSMGNPH + FV++ + Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVGNETFKVT----AVSMGNPHCLIFVDEAV-S 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + ++ G + H +F N+ V + + ++ WERG G T ACG+ ACA+VVA+ Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V+V + GG LLIEW DNNHV+MTG A++ + G + Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277 >gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 280 Score = 337 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 135/281 (48%), Gaps = 9/281 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID H + T L DQ++++ Q VD RI N Sbjct: 1 MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ GI+ K DG I+V MG P+L Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLAP 120 Query: 128 KLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P S M D V + VVSMGNPHA+ VED + + G Sbjct: 121 AAVPFDASNLDSRAMGEDTLWPLDVQGKQV-WISVVSMGNPHAVQVVEDS-EAAPVLAEG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F VN ++ S+ LR +ERG G T ACG+ ACA+VVA + Sbjct: 179 PLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRRGLLDS 238 Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284 V+V+ GG L I W V MTG A +EG+++I Sbjct: 239 PVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEIAAA 279 >gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01] gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01] Length = 276 Score = 337 bits (866), Expect = 8e-91, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V++ GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQLS 275 >gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33] Length = 303 Score = 337 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISV MG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] Length = 368 Score = 337 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R +D + + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RFL + +S+ ET G ++ + +DG Sbjct: 60 QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L + +P S D+ R + + V MGNPH + V DDL Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEV--TREGLTLSLAAVGMGNPHVVVPV-DDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L P+F N+ +V S + L++R WERG G T ACG+ ACA++VA Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L ++ +V + GG L I W D VFMTG A ++G ++ Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMNPD 284 >gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681] gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus polymyxa E681] Length = 277 Score = 337 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V + + A+ D ++ I + A D + Sbjct: 1 MEFTKMNGLGNDFIVWFGHQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKA--DFCM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGI----LVAKENRDGSIS 117 RIIN DGSE + CGN +RC +++ + R+ T ET+ G+ L + + Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP ++ + G F VSMGNPH + +VE D Sbjct: 119 VDMGEPILEGLKIPTTLERTRVINEPIEAGGSGFCFT----AVSMGNPHCVIYVE-DAPS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG+L Sbjct: 234 LNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276 >gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] Length = 276 Score = 337 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 133/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPSKIPFKAKQP----EKTYILRTDAHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V++ GG L I W ++MTG A ++G+L Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQLS 275 >gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] Length = 276 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S + T +G +V D ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP F ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIP----FKAKQTEKTYILRADEKTLFCG-AVSMGNPHV-VTVVDDVNTTDVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQLS 275 >gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1] gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1] Length = 293 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 149/286 (52%), Positives = 190/286 (66%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 FAKM G+GN I+V DMRG D + +A L++D THFDQIM IHD + + +I I Sbjct: 6 QFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 IN DGS Q+CGNGMRCVV+ L + R SFTFETI G+L A+E+ +G ISVDMG+P Sbjct: 66 INSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F + +GP++ L +P V SMGNPHAIF+VEDD Y YDL FG + Sbjct: 126 WQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLERFGPM 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N++IARV S E L +RTWERG GLT ACGSAACA+ V++ +T R V Sbjct: 186 LENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGV 245 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG L I W D++HV MTG A+ E+ G+ D TG W ++ E Sbjct: 246 KVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEG 291 >gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 277 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ H S+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ CGNGMRCV +++ + + +T GI L + + + V Sbjct: 59 EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V D++ + Sbjct: 119 NMGEPVLETKAIPMIYEGEKVISQPFNVG----QDIYEITAVSMGNPHAVVYV-DNVKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] Length = 312 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 146/289 (50%), Positives = 195/289 (67%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GN+I+V D+RG I+ A AL+ + T FDQIM IHD + DA IR Sbjct: 21 VPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTDALIR 80 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IIN DGSE ++CGNG RCVV+ L S ++ FTFET GI++A E DG I+VDMG P Sbjct: 81 IINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMGRPRF 140 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP++ L +P V SMGNPHAIF+V++D++ YDL FG Sbjct: 141 GWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLERFGP 200 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++ +T+RA Sbjct: 201 VLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGRTDRA 260 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 V+V + GG LLI W +++ V MTG A W G+LD TG +++ +++ Sbjct: 261 VTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEEA 309 >gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653] gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653] Length = 303 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 147/282 (52%), Positives = 193/282 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRD 288 >gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 282 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ +N + A+ D ++LI+ + A D + Sbjct: 1 MKFTKMQGLGNDYVYVNGFTERIENPSEVAVKVSDRHFGIGSDGLILINPSKVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNGMRCV +++ + ET+ GI L + + + V Sbjct: 59 EMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L LIP+ + + + + + VSMGNPH + ++ DD+ H Sbjct: 119 DMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYM-DDIEHL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G H F + +N A V +++ +R WERG G T ACG+ ACA V+S Sbjct: 174 DIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+V++LGG LLI+W + + V+MTG A+ ++G+ Sbjct: 234 NGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGE 274 >gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 277 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ H S+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ CGNGMRCV +++ + + +T GI L + + + V Sbjct: 59 EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V D++ Sbjct: 119 NMGEPVLETKAIPMIYDGEKVISQPFNVG----QDIYEITAVSMGNPHAVVYV-DNVKSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400] Length = 282 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 13/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + +K T ET G+L + + R + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P L IP+ D D N VSMGNPH + FV DD+ + Sbjct: 119 VNMGKPRLTRAEIPMLG--DPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFV-DDVEN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H MF N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 176 FQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T + + + GG L +EW ++ ++MTG A + + G++++ T Sbjct: 236 LNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGT 281 >gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 302 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 11/291 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + + F KM+G GN +V+D +T L DQI+ + + Sbjct: 12 ERMRIQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLGDRHFGVGADQILTVRPSPAEGI 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG+EV+ CGNG RC RF+ + + +T++G++ DG ++V Sbjct: 72 DFEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTV 131 Query: 119 DMGEPILDWKLIPLARSFDKMDR----DRFHIGPVN--HLFLRNPFVVSMGNPHAIFFVE 172 DMG P+ + IP S + + + PV VSMGNPHA+ V Sbjct: 132 DMGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLVA 191 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +A+ G + +P F++GVN+ +V S + LR +ERGVG T ACG+ ACA+ Sbjct: 192 -DVDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAA 250 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 VVA L + V V+ GG L I W VFMTG A + G++++ Sbjct: 251 VVAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELP 301 >gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] Length = 281 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 16/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAF 63 + F KM G GN + +D+ + + + +D + D ++LI A DA Sbjct: 1 MKFTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117 +R+ N DGSE + CGNG+RCV +++ +++ T ET G+L ++ R + Sbjct: 59 MRMFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL+ IP + D +G VSMGNPH I FV D L Sbjct: 119 VNMGQPILESAKIPTTLAGDPPVEADLQVGDQTLKVT----CVSMGNPHCITFV-DKLSD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + KH +F VN V S L++R WERG G T ACG+ ACA VA Sbjct: 174 EWVHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 + R V++ +LGG L +EW + VFMTG A + + G+ Sbjct: 234 LSGRCERKVTIHLLGGDLELEWSEETGEVFMTGPAVEVYSGE 275 >gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] Length = 277 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ S+ +S D +++I+ + A D + Sbjct: 1 MRFTKMHGLGNDYVYVNCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + S + ET+ GI L K+ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L + IP+ +++ + +G + + VSMGNPH + +V+ DL Sbjct: 119 DMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVK-DLEGV 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G H F + VN +V +++++R WERG G T ACG+ ACA VAS Sbjct: 174 KIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG LLIEW + V+MTG A ++G++ I Sbjct: 234 NGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277 >gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 277 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ S+ +S D ++LI + D + Sbjct: 1 MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 ++ N DGS + CGNG+RCV +++ + + ET+ GI L +E + + V Sbjct: 59 KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PI + IP+ D + + +SMGNPHA+ ++ DD+ + Sbjct: 119 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYR----MTCISMGNPHAVVYL-DDIQNM 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G HP F VN A V E++++R WERG G T ACG+ ACA VAS Sbjct: 174 EIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 234 NGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275 >gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004] gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038] gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 274 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PDFEPQTVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 NENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL 274 >gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] Length = 303 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVD+G P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110] gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110] Length = 294 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 14/292 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA---S 59 + F KM+G GN +V+D +T+ L+ DQI+ + Sbjct: 1 MRIRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLADRHFGVGADQILTVRPPSKGAAEG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD I N DG EV+ CGNG RC +RF+ + + ET+ GI+ + DG ++ Sbjct: 61 VDFQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRVT 120 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFFV 171 VDMG PI + +P D +H +G + + V+SMGNPHA+ V Sbjct: 121 VDMGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQVV 180 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D++ +A G L+ HP F++ VN +V + LR +ERG G T ACG+ ACA Sbjct: 181 -DNVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACA 239 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 +VVA L R V V+ GG L I W H V MTG A +EG +++ Sbjct: 240 AVVAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVP 291 >gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 284 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 13/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M F KM G+GN +V+D R ++T + + A+++ DQ++++ D+ Sbjct: 1 MSERAWPFLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSC 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA + I N DGSEV +CGN RCV L + F+T G+L A+ ++VD Sbjct: 61 ADAQMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG LDW+ IPLA + D + + L +P VSMGNPHA+FFV DD Sbjct: 121 MGPARLDWREIPLAEAMDTLHL------GITAGPLSDPVGVSMGNPHAVFFV-DDAEAVP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234 LA G L H +F E N+ +A+V S + +R WER G+T ACG+ ACA++V Sbjct: 174 LAQLGRGLEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ + R + + GG L IEW + HV MTG + G LD Sbjct: 234 AAARRGLSPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279 >gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] Length = 280 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 16/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63 + F KM GIGN + +++ + + + + ++ D ++LI + DA Sbjct: 1 MRFTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE-----NRDGSI 116 +++ N DGSE + CGNG+RCV +++ K+ ET RG+L + + + Sbjct: 59 MQMFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG PIL IP A D +G + VSMGNPH + FV D+L Sbjct: 119 RVNMGTPILKSADIPTALPGDPPVNQPLVVGDK----TISVTCVSMGNPHCVTFV-DELT 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G + H F VN A+V S + LR WERG G T ACG+ ACA++VA Sbjct: 174 DAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATLVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +T+ + + GG L IEW D VFMTG A + + G+ Sbjct: 234 VLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPATEVFTGE 275 >gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] Length = 280 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 16/287 (5%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI A D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDM P+L + KM + + V MGNPH + F+ DD+ Sbjct: 120 VTVDMDLPLLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA Sbjct: 174 KNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + HKT R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 234 AYLNHKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1] gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1] Length = 304 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 124/295 (42%), Positives = 168/295 (56%), Gaps = 5/295 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M S+ F KM G+GN +V D R +++ + I AL FDQ++ + A Sbjct: 1 MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITVECSP-AG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118 DAF+RI NCDGS+V +CGN RCV R L R ET G+LVA+ D ++V Sbjct: 60 ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V D+ Y Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWV-GDVEAY 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA VA+ Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + R +V + GG L IEW + + HV MTG + E+EG++D+ T W + Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAWERTGPG 293 >gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43] Length = 289 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 135/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ R S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAK 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + +HP F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AAPVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289 >gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2] gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2] Length = 303 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P W Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99] Length = 303 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 145/285 (50%), Positives = 193/285 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG + E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQG 291 >gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] Length = 294 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 145/282 (51%), Positives = 192/282 (68%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I IINCD Sbjct: 1 MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW+ I Sbjct: 61 GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL H Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+V + Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 282 >gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4] Length = 289 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V V GG L I W + + M G A +EG +D+ Sbjct: 239 IRRGQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] Length = 282 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 17/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VI+ ++ + AI D ++++ +D +D Sbjct: 1 MRFTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDRHFGIGGDGLVIVG--KDRELDV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 F+RI N DGSE + CGN +RCV +F+ R + + T+ G ++ K + Sbjct: 59 FMRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ LIP+ S K+ + VSMGNPH + FV D+ Sbjct: 119 RVDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRIT----AVSMGNPHCVVFV-DEFS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ +G +L HP+F N+ A++ ++ +R WERG G T ACG+ ACA++VAS Sbjct: 174 SVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGACATLVAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 T R +V++ GG L+IEW DNNHV+MTGEAK+ + G++D++ Sbjct: 234 YLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280 >gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] Length = 277 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 138/284 (48%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ AI D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFKETVEDPEKTAILVSDRHFGIGSDGLILIKPSSVA--DGKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ CGNG+RCV +++ + S + ET GI L + + ++ V Sbjct: 59 EMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P+L IP + + + + VSMGNPHA+ +VE D+ H Sbjct: 119 NMGSPVLQAAAIPAVSEKETVIDEPVTVNGREWRLT----CVSMGNPHAVTYVE-DVKHL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G HPMF + VN A V ++++R WERG G T ACG+ ACA+ VAS Sbjct: 174 DIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG L I W N+V+MTG A ++G++ + Sbjct: 234 NGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEIAL 277 >gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 278 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F+KM G+GN V+D + I L FDQ++++ +D Sbjct: 1 MLLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N +GSEV+ CGNG RC +F+ + + ET +G + DG ++VDM Sbjct: 61 RYRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P + + D ++ + L VS+GNPHA+ V D L + Sbjct: 121 GAPSFAPADLPFDATEKQDDLYTLNLEGYGSVEL---TPVSVGNPHAVIRV-DRLTDEIV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ++ G L+ H F VN+ V S + ++LR +ER VG T ACG+ CA++VA Sbjct: 177 STVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQG 236 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 N V+ +LGG L IEW + + + MTG A K +EG++ + Sbjct: 237 WLNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQIYL 278 >gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] Length = 278 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + S A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118 Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P K IP+ + + + + MG PH + FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIEVDGKEYKIT----SLLMGVPHTVLFV-DDVE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 174 KVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L IEW D+ VFMTG A++ + G+ Sbjct: 234 NLNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGEY 276 >gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] Length = 269 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 29/288 (10%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R N AI + D ++LI A D Sbjct: 2 TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115 +RI N DGSE CGN RC+ ++L + T ET+ GI V K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVKA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ I ++ F VSMGNPH + FV DD+ Sbjct: 120 VTVDMGVP-LETGTIDF-----------------DNKFPFVSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G L +HP+F + N+ A++T + +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RSIDLPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V + M GG L I+W + NHV+MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELR 268 >gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383] Length = 289 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 137/290 (47%), Gaps = 11/290 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ VD Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ +P A D + P++ R V+MGNPHA+ V DD Sbjct: 121 MGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 180 YPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 289 >gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] Length = 278 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ ++ +S D ++ IH A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DG+E CGNG+RC+ +++ + + T ET GI L ++ + ++V Sbjct: 59 AMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVNV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DM P+L+ IP+ +K D+ I VSMGNPH + FV D + Sbjct: 119 DMEAPVLEADKIPVIYDEEKKVIDKPVIVDGRE---YRITCVSMGNPHGVVFV-DSVDDL 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + HPMF + VN +V ++ +R WERG G T ACG+ ACAS AS Sbjct: 175 DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYASYL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 235 NQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278 >gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] Length = 278 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + S+ +S D ++LI Q A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ CGNG+RCV +++ + + + T GI L + + + V Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL+ IP+ + + + F VSMGNPHA+ ++ DD+ + Sbjct: 119 NMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYL-DDVDNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G KHP+F + VN +V ++L +R WERG G T ACG+ ACA V+S Sbjct: 174 DIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + T V+VK+LGG L I W N V+MTG A ++G++ + Sbjct: 234 NNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITLP 278 >gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 309 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 11/289 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++L+ VD Sbjct: 22 KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDF 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 82 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 141 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P A D + P++ R V+MGNPHA+ V DD Y Sbjct: 142 GAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAEAY 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 201 PVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 261 RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 309 >gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 335 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV TG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] Length = 280 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 16/287 (5%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI A D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDM P+L + KM + + V MGNPH + F+ DD+ Sbjct: 120 VTVDMDLPLLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA Sbjct: 174 KNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + HK R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 234 AYLNHKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1] gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1] Length = 277 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++T + + L+ DQ++++ + VD Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET GI+ + DG ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+L+ +P D + + +G VSMGNPHA+ V D A+ Sbjct: 123 PVLEPARVPFVSDSDAIVQ-PLDVGGETVAIT----AVSMGNPHAVQVVADVDAAPV-AA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ +HP F VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 177 QGALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVILRELA 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V+ GG L I W V MTG A + G++D+ Sbjct: 237 QSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDVD 277 >gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] Length = 290 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 9/283 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+K + GN ++ + +S+ + L + D I+ + DA D Sbjct: 4 LMYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGIIYVLPSLDA--DFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC +F+ ++ + + SF+ ET GIL + ++G++ VDMG Sbjct: 62 MRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ IP+ K+ D + R VSMGNPH + F D + ++ Sbjct: 122 IPNLNSDDIPVKGFSKKVVIDELLNISHENTAYR-INCVSMGNPHCVIFT-DKIDSINIE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G+++ H F + N+ + S L ++ WERG G+T ACG+ +CA+VVA+ + Sbjct: 180 ADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAATLNNL 239 Query: 242 TNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 240 VNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 282 >gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] Length = 286 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K + GN ++ + +S+ + L + D ++ + DA D + Sbjct: 1 MYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGVIYVLPSLDA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGNG+RC +F+ ++ + + SF+ ET GIL + ++G++ VDMG Sbjct: 59 RIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMGI 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP+ K+ D + R VSMGNPH + F D + ++ + Sbjct: 119 PNLNSDDIPVKGFSKKVIIDELLNISHENKAYR-INCVSMGNPHCVIFT-DKIDGINIEA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+++ H F + N+ + S L ++ WERG G+T ACG+ +CA+VVA+ + Sbjct: 177 DGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAAILNNLV 236 Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 237 NNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 278 >gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13] Length = 279 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 17/286 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ N ++ D ++LI Q A D + Sbjct: 1 MKFTKMQGIGNDYIYVNCFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE CGNG RC+ +++ + T ET GI L ++ S++V Sbjct: 59 RIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+ IL + IP+ + ++ F PV L VS+GNPHA+ F D + Sbjct: 119 DMGKAILTPREIPV----ESDSQEPFVAKPVQVGDRLERLTCVSVGNPHAVVFC-DRVED 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL G L H +F + VN RV +L +R WERG G T ACG+ ACA+ VA+ Sbjct: 174 LDLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAAV 233 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + VK+ GG L I + + V MTG A++ ++G++++ Sbjct: 234 LNGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279 >gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] Length = 278 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 146/283 (51%), Gaps = 16/283 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +VI N+ A N + D ++ I + A D Sbjct: 1 MMKFTKMHGLGNDFIVIAGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVA--DFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116 +RIIN DGSE + CGN +RC +++ ++ T ET+ L + + + Sbjct: 59 MRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQQV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG PIL+ +P D++ + F VSMGNPH + +V DD Sbjct: 119 RVDMGAPILNGLQVPTTVDEDRVIEHPIEVDGREFRFT----AVSMGNPHCVIYV-DDAA 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++DLA++G L HPMF +N+ V S E ++R WERG G T ACG+ ACA+VV+S Sbjct: 174 NFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATVVSS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 T+R V + GG L IEW++ +NHV+MTG A + + G+ Sbjct: 234 VLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGE 276 >gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus] Length = 285 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 + +V F+K +G+GN +++D R + +T++ +L D ++ D + Sbjct: 4 TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118 D +RIIN DGSE + CGNG+RC+ RFL +K + T+ G ++ DG ++V Sbjct: 63 DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122 Query: 119 DMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 DMG P L+ +P + + ++ + + VSMGNPHA+ FV D+ Sbjct: 123 DMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKDWEVT----CVSMGNPHAVVFVP-DV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL + G HP F +N +V + + + WERG G+T ACG+ ACA VVA Sbjct: 178 DALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 S +R +V + GG L IEW + + V+MTG A+ ++G Sbjct: 238 SVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280 >gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] Length = 303 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 145/285 (50%), Positives = 193/285 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] Length = 278 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + + A D ++ + A D + Sbjct: 1 MRFSKWQGCGNDFVLVDCFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN----RDGSISV 118 RI N DGSE + CGNG+RC R+L +++ FT ET GILV + + + V Sbjct: 59 RIFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP+L+ + IP+ +++ + + + VSMGNPH + FVE D Sbjct: 119 DMGEPVLEGEKIPVTGFGMNRVIEEDIEVKGKTYK----MTCVSMGNPHCVIFVE-DAEA 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G HP F N V + + +R WERG +T ACG+ +CA+ VA Sbjct: 174 FPIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +T+R V V++ GG L +EW + NHVFMTG A+ + G++D Sbjct: 234 LTGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277 >gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] Length = 279 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F KM G GN +VID + ++++ I L+ DQ++++ D Sbjct: 1 MKVRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DGSE CGNG RC RF+ + + + G++ DG I +M Sbjct: 61 RYHIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G PI +P D+++ V+SMGNPHA+ VE+ + + Sbjct: 121 GIPIFTPSAVPF-----DTDKEQLEYTLTVSDTSLAMGVLSMGNPHAVIIVEN-VQTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 AS G + HP F++ VN+ ++ S + + LR +ERG G T ACG+ ACA+VV + Sbjct: 175 ASLGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKN 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N AV+V + GG L I W N +++G +EG +++ Sbjct: 235 LLNNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276 >gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454] gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 10/289 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + + F KM G GN +V+D + T + L+ DQ++L+ VD Sbjct: 41 AMKLKFTKMHGAGNDFVVLDGVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVD 100 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + ++ + G++ +G + VD Sbjct: 101 FKYRIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVD 160 Query: 120 MGEPILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+L +P S RD + P++ H + VVSMGNPHA+ V DD Sbjct: 161 MGAPVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIV-DDADA 219 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G ++ H F VN ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 220 APVNRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGI 279 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W + V M G A +EGK+D+ Sbjct: 280 RRGVLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328 >gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] Length = 286 Score = 334 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 16/286 (5%) Query: 5 MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+ R + + A+ + D ++ I A D Sbjct: 8 MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116 +RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + S+ Sbjct: 66 MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 125 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + Sbjct: 126 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRFT----AVSMGNPHCVIYVDDAV- 180 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V+S Sbjct: 181 NFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 240 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 241 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286 >gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] Length = 289 Score = 334 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + + P F + VN +V S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289 >gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 281 Score = 334 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 15/283 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61 + F K +G+GN ++ID R + + + I D D ++ Q A+ D Sbjct: 1 MKIPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQ-AATD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+RC+ +F+ + +++ T+ G ++ + + ++ Sbjct: 60 YTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVT 119 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L IP L + +K+ + + L VSMGNPH + FV DDL Sbjct: 120 VDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLIT----CVSMGNPHCVTFV-DDL 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G HP+F + N+ V + + +R WERG G+T ACG+ ACA VVA Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + K +R +V++ GG L I W D +N V+MTG AK +EG Sbjct: 235 AVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277 >gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98] gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14] gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9] gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210] gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894] gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177] gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112] gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215] gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] Length = 289 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 15/286 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 + + F K +G+GN +++D R ++ + AL D ++ + Q+ Sbjct: 2 TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQE-GA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSIS 117 D +R+ N DGSE + CGNG+RC+ RFL + ++ T+ G +V + DG ++ Sbjct: 61 DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L K IP L +K+ R + VSMGNPH + F+E++ Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGREWRVT----AVSMGNPHCVVFLEEEG 176 Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L A+ G L HP F E N +V S L LR WERG G T ACG+ ACA + Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 VA+ + +V++ GG L I W HV+MTG A + G Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282 >gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1] Length = 299 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 13/300 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDM Sbjct: 61 KYRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP + + +V ++GNPHAI V+D L Sbjct: 121 GKPKFEPDQIPFTPKTITKVGRAYRLDV--DGIPVQLYVANIGNPHAIIKVDDVLDADV- 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV Sbjct: 178 DRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREG 237 Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK-----TGKWIKKNEDD 293 + V ++ + GG L I W D + MTG +EG G + N DD Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297 >gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] Length = 290 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 102/276 (36%), Positives = 138/276 (50%), Gaps = 10/276 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KMEG+GN +V+D + + + ++ DQI+L+ D R Sbjct: 14 PFTKMEGLGNDFVVLDGVRRNFLLDPETCQRIAHRHYGIGCDQILLVEPASSPDCDFRYR 73 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV CGNG RC F+ ++S ET G L + + DG+++VDMG P Sbjct: 74 IFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMGVP 133 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LD IP R+ + R +G +H+ L V MGNPHA+ VE D+ +A Sbjct: 134 RLDPADIPF-RAPAAANNYRLDLG-QDHIEL---AAVGMGNPHALLRVE-DVRGAPVAEI 187 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL HP F E N+ + S +L LRTWERG G T ACGS ACA+VVA Sbjct: 188 GPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGALR 247 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 V V++ GG L I W H+ MTG A+ ++G Sbjct: 248 ERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDGV 283 >gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 274 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D+ + ++ I L+ FDQ++ + D +D Sbjct: 1 MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ F+ + ++ T +V + + V+MG Sbjct: 61 RIFNADGSEVTQCGNGARCLAHFVRMKKLTNKREIYISTQTSRMVLTIIENNMVRVNMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP ++++ N++F +VS+GNPH I V +++ ++ Sbjct: 121 PKFELPQIPF--DMHQIEKKEILYLAKNYIF---GGIVSIGNPHCIMIV-NNVDSAQVSI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H FSE N+ +V + E + LR +ERGVG T ACGS ACA+V L Sbjct: 175 IGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIRLGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V + GG L+I W ++MTG A ++G ++ Sbjct: 235 AEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273 >gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] Length = 289 Score = 334 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] Length = 306 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 131/301 (43%), Gaps = 18/301 (5%) Query: 2 QSSM--VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHD 54 +++M + F KMEG GN + +D + I L+ D ++LI Sbjct: 5 RTTMRKIAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILP 64 Query: 55 FQDAS-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111 D +R+ N DGSE + CGN RCV RF R ET+ GI + + Sbjct: 65 PTSPDSADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRV 124 Query: 112 RDG-----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNP 165 D + VDMG P L + IP+ P+ L VSMGNP Sbjct: 125 DDAGGCPSRVCVDMGTPELARQRIPVCPDTASDPESPCIGQPIRVLDREWTMTCVSMGNP 184 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV DD+ DL G HP F N ++ + +R WERG G T AC Sbjct: 185 HAVVFV-DDVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLAC 243 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 G+ ACA VA T R V+V++ GG L I W + H+ MTG A+ + G+ G Sbjct: 244 GTGACAVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQG 303 Query: 285 K 285 + Sbjct: 304 Q 304 >gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis] Length = 303 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 92/293 (31%), Positives = 142/293 (48%), Gaps = 19/293 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60 ++ V FAK +G+GN +++D R + + A+ + D ++ ++ Sbjct: 16 AAAVKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSEN-GT 74 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC+ RF+ + + T+ G++ DG + Sbjct: 75 DYSMRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVC 134 Query: 118 VDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VDMGEPIL +P + + + + + L VSMGNPHAI F D Sbjct: 135 VDMGEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKEWL----MTCVSMGNPHAITFGLAD 190 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + DL G +P+F N V S + + WERG G T ACG+ A Sbjct: 191 GSSIKVDSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGA 250 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA+VVA T+R+ V + GG L IEW + +NH++MTG A+ + G +D+ Sbjct: 251 CATVVAGVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303 >gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] Length = 269 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ + I + VSMGNPH + FVE D+ Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ + +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] Length = 289 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDDAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] Length = 285 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 131/282 (46%), Gaps = 9/282 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D + T + A++ DQ++L+ VD RI N Sbjct: 1 MHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNH 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG P+ + Sbjct: 61 DGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPVFEA 120 Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P D H +N VSMGNPHA+ V DD + + G Sbjct: 121 ARLPFVPDGLPTRVEGADTQHALQINGR-TEWLSTVSMGNPHAVQVV-DDAEAFPVLEDG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA + Sbjct: 179 PLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDS 238 Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 V V GG L I W + V MTG A +EG LD+ K Sbjct: 239 PVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLDALK 280 >gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169] gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1] gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1] gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1] gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7] gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8] gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72] gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1] gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E] Length = 299 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 13/300 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 1 MLIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDM Sbjct: 61 KYRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IP + + +V ++GNPHAI V+D L Sbjct: 121 GKPKFEPDQIPFTPKTITKVGRAYRLDV--DGIPVQLYVANIGNPHAIIKVDDVLDADV- 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV Sbjct: 178 DRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREG 237 Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK-----TGKWIKKNEDD 293 + V ++ + GG L I W D + MTG +EG G + N DD Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297 >gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2] gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 269 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ + I + VSMGNPH + FVE D+ Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] Length = 277 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 147/281 (52%), Gaps = 7/281 (2%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 M ++M F KM G+GN +V++ R T+ + A++ DQ++ + + Sbjct: 1 MSAAMGRPFLKMNGLGNDFVVVETRSAPFEPTAAQVRAIADRATGIGCDQLIAVDPAE-- 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 DA +R N DG EV +CGNG RCV L + ET G LVA + +SV Sbjct: 59 GADAHVRFWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+W IPLA D D + + P VSMGNPH +FFV D Sbjct: 119 DMGPPRLEWNEIPLAEPHDTRALDVVLYHHAD--LMAPPGCVSMGNPHVVFFVP-DAEQA 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 A G + HP+F E VN+ A+V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 176 PAAEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASR 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R ++++ GG L +EW + HV MTG A +++G+L Sbjct: 236 RGLIGRHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276 >gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1] gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1] Length = 287 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 10/284 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME +GN +V+D ++T + I L+ DQ+++ + D Sbjct: 1 MRFTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV+ CGNG+RC+ RFL ET I A+ DG +SVDMG Sbjct: 61 RIFNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP + ++ + + VSMGNPHA+ V DD+ +A Sbjct: 121 PELEPARIPFQAP---VRQEAYRLATSRGEQT--IGAVSMGNPHAVLRV-DDMTGAPVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +HP F VN+ V + + + LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 LGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRLRDWL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V+V++ GG L+I W V+MTG A+ + G++++ Sbjct: 235 DAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELPASA 278 >gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] Length = 279 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 16/286 (5%) Query: 5 MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+ R + + A+ + D ++ I A D Sbjct: 1 MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116 +RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + S+ Sbjct: 59 MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + Sbjct: 119 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRFT----AVSMGNPHCVIYVDDAV- 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V+S Sbjct: 174 NFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 234 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279 >gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147] Length = 293 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P S + R+ + P++ + R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 FPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 240 RRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287 >gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 278 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN LV DN++ AI D ++ I A D + Sbjct: 1 MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117 RIIN DG+E + CGN +RCV +++ + + S T ET+ G+ L ++ ++ Sbjct: 59 RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPILD IP + + + F VSMGNPH + +V DD + Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKFT----AVSMGNPHCVIYV-DDAPN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ ++G L HP F +N+ A VT+ + +++R WERG G T ACG+ ACA++V+S Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+RA + + GG L IEW + +NHV+MTG A+ ++G ++I Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278 >gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] Length = 268 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ + I + VSMGNPH + FVE D+ Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] Length = 286 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 21/289 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN L+ID R + + T + D ++ + D Sbjct: 3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGT-GESDYR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118 +R+ N DGS Q CGNG+RC+ +F+ + R + +T+ G++V + DG ++V Sbjct: 62 MRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTV 121 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG+P L + IP LA + K+ +G L VSMGNPH + FVE D+ Sbjct: 122 DMGKPRLLAQQIPTTLAAADQKVVDVPLTVGDRQWLVT----CVSMGNPHCVTFVE-DVA 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DLA G HP F + N +V + L +R WERG G+T ACG+ ACA++VA+ Sbjct: 177 ALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVAA 236 Query: 237 GCL-----HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 +V++ GG L I W + H++MTG A + G L Sbjct: 237 VLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285 >gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] Length = 303 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 124/296 (41%), Positives = 168/296 (56%), Gaps = 5/296 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M S F KM G+GN +V D R + +AI AL FDQ++ + Sbjct: 1 MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITVERS-SLG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118 VDAF+RI N DGSEV +CGN RC+ R L + T ET G+L A + S++V Sbjct: 60 VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAFDADGPRSVTV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V DD+ Y Sbjct: 120 DMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWV-DDVEAY 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G LL HP+F E N+S+A V + + ++ WERGVGLT ACG+AACA VA+ Sbjct: 179 ELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAAR 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 +T+R ++ + GG + IEW + +NHV M+G + E+EG++D+ T W K D Sbjct: 239 DGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294 >gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] Length = 296 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 143/292 (48%), Gaps = 13/292 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D ++ L+ DQ++++ + +D Sbjct: 1 MKLRFTKMQGAGNDFVVLDATREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI+N DGSEV+ CGNG RC VR++ K+ + T G++ + DG ++VDM Sbjct: 61 TYRIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIF----FVEDD 174 G P+ + +P A + + F + P++ VVSMGNPHA+ F Sbjct: 121 GAPVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGG 180 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +A G L+ +H F + VN +V S + LR +ERG G T ACG+ ACA+VV Sbjct: 181 VDEAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVV 240 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 A L V V GG L IEW + V+MTG A+ + G++D+ Sbjct: 241 AGIRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLP 292 >gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803] gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803] Length = 368 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 143/288 (49%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-----DNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + SD + + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +S++ ET G+++ + +DG Sbjct: 60 QGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L +++P S D R + + V MGNPH + V DDL Sbjct: 120 IRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVS--REGLTLSLAAVGMGNPHVVVPV-DDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L P+F N+ +V + L++R WERG G T ACG+ ACA++VA Sbjct: 177 EAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + ++ +V + GG L I W D VFMTG A ++G ++ Sbjct: 237 AVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMNPD 284 >gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 407 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 92/296 (31%), Positives = 139/296 (46%), Gaps = 21/296 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S +DF K +G+GN ++ID R + A + D ++ DAS Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D +R+ N DGSE + CGNG+RC+ RF++ M K + T+ G++ + DG ++V Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235 Query: 119 DMGEPILDWKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173 DMG PI + +P + K+ R + L VSMGNPH I F Sbjct: 236 DMGMPIFEPSEVPTTLAATQDGKVVRAEMDVDGEKWLVN----AVSMGNPHCITFGRAGG 291 Query: 174 -------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 L + L+ G HP F N +V + + + WERG G T ACG Sbjct: 292 EADGPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACG 351 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + ACA+VVA + +R +V++ GG L IEW + + + MTG A+ + GK + Sbjct: 352 TGACATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGKYFL 407 >gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] Length = 269 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ + I + VSMGNPH + FVE D+ Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + T R V M GG + IEW++ + H+ MTG A K ++G+++ Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIE 266 >gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] Length = 277 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 106/284 (37%), Positives = 149/284 (52%), Gaps = 18/284 (6%) Query: 1 MQS---SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ 56 MQS + + F KM G+GN +V+D RG +T + AL+ FDQ+ +I D Sbjct: 1 MQSNSDTGLPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAIITDG- 59 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + D + N DGS +CGN RC+ R+ R + S T T RG+L+A+E +G Sbjct: 60 -GNADLHLTFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLT 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV+MG P+ DW IPLA D + L P SMGNPH FFV DD+ Sbjct: 119 SVNMGHPMTDWDEIPLAEDVDTLAL----------PILGAPTATSMGNPHCTFFV-DDVM 167 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DLA+ G + HP+F E N+ A+V + + +R WERG G+T A GS++CA+ VA+ Sbjct: 168 AIDLAAIGPTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAA 227 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T V + + GG L +EW D+ V+MTG + G L Sbjct: 228 YRRGLTRAKVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVLT 270 >gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] Length = 277 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +++D R IT + FDQ+ +I + DA Sbjct: 7 TGLPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVI---VNGESDA 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ RFL + T T G L A++ DG SV+MG Sbjct: 64 HLVFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGH 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW IPLA D ++ GPV MGNPH FFVE D L Sbjct: 124 PQLDWADIPLAEEVDTLEL-PIEGGPV---------ATGMGNPHCTFFVE-DAEAIPLEE 172 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 173 FGARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLT 232 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 R V +++ GG + I+W ++ V+MTG + G L + Sbjct: 233 GRKVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTLTPE 271 >gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] Length = 289 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++++ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+T R ++S + ++G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P A D + P++ R VSMGNPHA+ V DD Sbjct: 121 MGAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 YPVLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++++ Sbjct: 240 RRGLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287 >gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] Length = 279 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 143/282 (50%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++++ D++ + + D ++L+ Q A D +R Sbjct: 5 FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFRMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVD 119 I N DG+E + CGNG+RC + + FT ET GILV + GS + VD Sbjct: 63 IFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVRVD 122 Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEPIL+ + IP+ ++ + VSMGNPH + FVE D Sbjct: 123 MGEPILEGERIPVLGFGASRVIEQPIEAEGE----TFSMTCVSMGNPHCVIFVE-DAQDV 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + FG LL +H F + N+ A + + +R WERG +T ACG+ +CA++VA+ Sbjct: 178 PMEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAAL 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +T R V++ GG L IEW +N+HV+MTG A+K + G+ + Sbjct: 238 TGRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279 >gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32] gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32] Length = 276 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 132/278 (47%), Gaps = 10/278 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + S T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V V++ GG L I W + MTG A ++G+L Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQLS 275 >gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] Length = 278 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P K IP+ + + + + MG PH + FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTPIEVEGKEYKIT----SLLMGVPHTVLFV-DDVE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 174 KVDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L IEW D++ VFMTG A++ + G+ Sbjct: 234 NLNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGEY 276 >gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453] gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453] Length = 278 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+ N S+ L D ++ I + A D + Sbjct: 1 MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117 RI+N DGSE + CGN +RCV +++ + R+ T ETI G+ L ++ + S+ Sbjct: 59 RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + + Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRFT----AVSMGNPHCVIYVDDAV-N 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F +N+ A V S + +D+R WERG G T ACG+ ACA++V+S Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++G L I Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278 >gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] Length = 269 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 10/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + D I L+ FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF+ + S + T +G +V D ++V+MG P + Sbjct: 61 DGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP F ++ +I L VSMGNPH V DD+ D+ + G LL Sbjct: 121 NKIP----FKAKQTEKTYILRAEDKTLFCG-AVSMGNPHV-VTVVDDVATADVETLGPLL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN +V S ++LR +ERG G T ACGS AC +V + V+ Sbjct: 175 ESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLDEHVT 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + GG L I W +FMTG A ++G+L Sbjct: 235 VHLPGGDLKISWKGPGKPLFMTGPATHVFDGQLS 268 >gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91] gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] Length = 289 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 91/291 (31%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] Length = 281 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 144/276 (52%), Gaps = 15/276 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D RG +T+ + A++ FDQ+ +I D Sbjct: 17 TFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVI--SDTPDADL 74 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R + + +++ T T RG L A + G SV+MG+ Sbjct: 75 HLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMGQ 134 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW IPLA D + +P MGNPH FFV DD DLA Sbjct: 135 PQLDWHEIPLAEQIDTLQL----------PIDGSPTATGMGNPHCTFFV-DDAEAVDLAM 183 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ HP+F + N+ A + + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 184 RGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGLT 243 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 R V++ + GG L I+W D+ ++MTG ++G+ Sbjct: 244 GRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQ 278 >gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2] gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] Length = 283 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N + +S D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGSE CGNG+RC+ +++ + + T ET GI L ++ + + V Sbjct: 59 AMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVKV 118 Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DM PI IP + D++ + + N +SMGNPH + FV D + Sbjct: 119 DMEAPITKASQIPAIYDDLDEVIDQPVIVDGKEY----NITCISMGNPHGVVFV-DSVAD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G HPMF + VN + +++ +R WERG G T ACG+ ACAS AS Sbjct: 174 IDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYASY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 KT + V V +LGG L IE+ + + +FMTG A ++G++D+ Sbjct: 234 LNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278 >gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 370 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F K G+GN +++D R + +T + L D ++ + Sbjct: 82 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGIN-G 140 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ ++SFT T G++V + DG + Sbjct: 141 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 200 Query: 117 SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMG+PIL +P +K + + ++ V+ N VSMGNPH + F Sbjct: 201 KVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVS----WNVTCVSMGNPHCVTFGTK 256 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + +LA G H MF N +V S L +R WERG G T ACG+ Sbjct: 257 GGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTG 316 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ACA VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 317 ACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370 >gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246] Length = 280 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 135/282 (47%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN + +D A+ D ++LI + A DA Sbjct: 1 MQFTKMHGLGNDYVYVDCVRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV----AKENRDGSIS 117 +R+ N DGSE + CGNG+RCV +F+ R + ET RG+L + + + Sbjct: 59 MRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAERVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL+ IP + VSMGNPHA+ + DD+ Sbjct: 119 VNMGEPILESAKIPTTLPGAPPVNAKLVCAA---PTPWEVTCVSMGNPHAVIYC-DDVAK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L P F +N+ +V S + +RTWERG G+T ACG+ AC+ VA Sbjct: 175 VELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGACSVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 H+T R + + GG L +EW + ++ V+MTG A + + G+ Sbjct: 235 LTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPATEVFTGE 276 >gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786] Length = 293 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 11/288 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E G+++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ + +P S + R+ + P++ + R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAEA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 FPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 240 RRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287 >gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] Length = 289 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 133/291 (45%), Gaps = 13/291 (4%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 1 MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI NCDG EV+ CGNG RC V+F+ + S E ++ +G + VD Sbjct: 61 FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVVD 120 Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG P+ + +P + D PVN R VVSMGNPHA+ V DD Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] Length = 278 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 141/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GSIS 117 R+ N DGSE + CGNG+RCV ++ + + T ET GIL + D + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L K IP+ + +R P+N L N SMGNPH + FV DD+ Sbjct: 119 VNMGPPRLTRKEIPMLGEPE----ERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 174 TFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++D+ Sbjct: 234 VLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278 >gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] Length = 284 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 16/286 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D R +N + + D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE + CGN RC+ ++L + T +T+ GI + K + G + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + M I + + VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPSDEPVNYD-GKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL+S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 174 TKADLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 234 AFLTGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] Length = 281 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 15/277 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 SS + F KM G+GN +V+D RG + A++ FDQ+ ++ + D Sbjct: 15 SSFLPFMKMHGLGNDFVVVDERGITPRVDKAVAVAIADRHRGVGFDQLAVM--SETPDAD 72 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS+ +CGN RC+ R + + + T +T RGIL AK+ +G SV+MG Sbjct: 73 VRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVNMG 132 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW+ +PLA + D ++ P MGNPH FFV D DLA Sbjct: 133 QPQLDWQHVPLAHAMDTLEL----------PIKGAPTATGMGNPHCTFFVY-DAEAIDLA 181 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP++ E N+ A + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 182 TKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARRGL 241 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T+R V++ + GG L I W D+ V+MTG ++G+ Sbjct: 242 TDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQ 277 >gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] Length = 300 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 153/287 (53%), Positives = 197/287 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM G+GN+I+V DMRG D IT +A L+ D T FDQIM IHD + A D +I II Sbjct: 7 FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG+E Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 V + GG L IEW D++HV MTG A+ E+ G D TG+W + ++D+ Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQNDK 293 >gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] Length = 277 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG GN + ++ ++ + + D +++I+ A D + Sbjct: 1 MKFTKMEGCGNDYVYVNGFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGSE + CGNG+RCV +++ + + T ET+ GI L ++++ ++ V Sbjct: 59 SMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL+ +P+ DK+ + + + VSMGNPHAI FV DD+ Sbjct: 119 NMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRIT----CVSMGNPHAITFV-DDIDSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + K +F E VN +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 174 DIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L IE+ D N V+MTG A+ + G+ + Sbjct: 234 NGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276 >gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 259 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 9/261 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P F + ++ +I + + VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVDTAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN 263 + V V + GG L I+W + Sbjct: 235 SANVRVSLPGGELDIQWDGRD 255 >gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] Length = 281 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 146/288 (50%), Gaps = 19/288 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +V++ ++ A+ D ++L+ A D Sbjct: 1 MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 RI+N DGSE + CGNG+RC+ R++ R + ++ ET+ GI+V + D + Sbjct: 59 IRWRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVT 118 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMGEP L IP+ +G + +SMGNPH + +V +D Sbjct: 119 GVCVDMGEPRLQRHQIPMVGPEGPAVNQELVVGDA----VVRVTALSMGNPHCLIYV-ND 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + + G + HP F N+ +V + + + +R WERG G T ACG+ ACA+VV Sbjct: 174 IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 S T+R V+V + GG L IEW +NN V+MTG A + + G+L + Sbjct: 234 GSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281 >gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium] Length = 270 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 17/282 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D + + +++ I AL+ FDQ+++I VD Sbjct: 1 MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ + + + ET G++ N D S+ VDMG Sbjct: 61 YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 EP+ + +PL + + + + +G V S GNPH + V DD+ D Sbjct: 121 EPVFNPSDVPLIAPEESLYYSIEGYEVG-----------VFSTGNPHCVMIV-DDVEGVD 168 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + + + + N+ ++ S ++LR +ERG G T ACGS ACA+V+ + Sbjct: 169 VETIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRI 228 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V+ + GG LIE++ HVF++G A+ +EG +D+ Sbjct: 229 GQLDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270 >gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] Length = 279 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 16/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G GN + ++ + ++ +S + D ++LI + A D + Sbjct: 1 MKFAKMHGAGNDYVYVNCFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ +++K T ET GIL + ++ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERVR 118 Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P L IP+ S ++ + + + VSMGNPH I FV D++ Sbjct: 119 VNMGKPRLTRGEIPMTGSPEEQVINAELKVLDR----TFHITCVSMGNPHCIIFV-DNVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + +A +G ++ PMF N+ + S + RTWERG G T ACG+ + A VA Sbjct: 174 EFPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGTGSSAVTVAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +T R + +LGG L +EW ++ V+MTG A + +EG D + Sbjct: 234 VLNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFDPQ 279 >gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] Length = 278 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P K IP+ + + + + MG PH + FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIEVEGKEYKIT----SLLMGVPHTVLFV-DDVE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 174 KVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + V+V + G L IEW D+ VFMTG A++ + G+ Sbjct: 234 NLNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGEY 276 >gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] Length = 277 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 108/275 (39%), Positives = 143/275 (52%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V+D R ++ A ++ DQI+LI +D AF+R Sbjct: 6 PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV L + T T G+L A+ + VDMG P L Sbjct: 64 ILNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA D + R +GPV NP SMGNPHA FFV DDL H + + G Sbjct: 124 GWEDIPLAEPADTLSL-RLALGPVQ-----NPAACSMGNPHATFFV-DDLTHLQIETIGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] Length = 266 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 136/284 (47%), Gaps = 28/284 (9%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ++ +R DN ++ D ++LI A D + Sbjct: 3 IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RI N DGSE + CGN RC+ ++L + ET+ GI + N S++ Sbjct: 61 RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P D + VSMGNPH + FV D++ Sbjct: 121 VDMGIPT-----------------DIHEVALGEGYIASKGIAVSMGNPHLVIFV-DEINK 162 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP+F + VN+ +V + + +R WERG G+T ACG+ ACA+ VAS Sbjct: 163 IKLEEVGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASA 222 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + R S+ M GG L IEW +NH++MTG A K ++GK++I Sbjct: 223 FTDRCGRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266 >gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] Length = 266 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R +T A++ DQ+++I D DA D Sbjct: 1 MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 ++I N DGSEV++CGN RCV F+ T T G+L A+ DG SVDMG P Sbjct: 59 MQIFNADGSEVEACGNATRCVPLFI-----GHDVTIRTRAGLLDARLI-DGGASVDMGAP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPLA + D + P + L P V++GNPH IFFV DDL D A Sbjct: 113 RFDWNAIPLAYAMDTLTM------PASWEDLPAPAAVNVGNPHVIFFV-DDLDAVDTARL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ + P+F + VN++ A+V + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I+W + MTG A ++G+ D Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262 >gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] Length = 266 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F+ + ET G+L AK DG SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLFV-----GRDVLIETKAGLLDAK-AVDGGASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPLA + D + PV+ L P V++GNPH IFF+ DDL + Sbjct: 113 RLEWDAIPLAYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFL-DDLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5] Length = 284 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 142/286 (49%), Gaps = 17/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + +S D ++LI + A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ CGNG+RCV +++ + + S + T GI L ++ + + V Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL K IP+ +++ + + + VSMGNPHAI +V DD+ Sbjct: 119 NMGSPILTAKEIPVVAETEQVIDAPITVDGKEY----HMTAVSMGNPHAIIYV-DDVNSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H F + VN +V ++ +R WERG G T ACG+ ACA VAS Sbjct: 174 DLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGACAVTVASIL 233 Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + + V+V++LGG L I W + + V+MTG A ++G++D+ Sbjct: 234 NDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279 >gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311] gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311] Length = 380 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 140/288 (48%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + + + L D ++L + Sbjct: 1 MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +++ ET+ G++V + DG Sbjct: 61 E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG+P L+ +P + + I V MGNPH + V+ DL Sbjct: 120 IRVDMGKPFLNSDQVPTNLPQGRSGLPQGEIDLQG--STLQLAAVGMGNPHVVVPVQ-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G+ L +F N+ V +L++R WERG G T ACG+ ACA++VA Sbjct: 177 KSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L + +VK+ GG L I W D VFMTG A ++G L+ + Sbjct: 237 ASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLNPE 284 >gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] Length = 277 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 107/275 (38%), Positives = 141/275 (51%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V+D R ++ A ++ DQI+LI D AF+R Sbjct: 6 PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIEP--DDGAAAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV L + T G+L A+ + VDMG P L Sbjct: 64 ILNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA D + R +GPV NP SMGNPHA FFV DDL H + + G Sbjct: 124 GWEDIPLAEPADTLSL-RLALGPVQ-----NPAACSMGNPHATFFV-DDLTHLQIETIGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 274 Score = 331 bits (849), Expect = 7e-89, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN ++ID + ++TS+ I LS FDQ++++ D ++D Sbjct: 1 MRFTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV CGNGMRCV +F L +++ T ++ D +SV+MG Sbjct: 61 RIYNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D KLIP S + +I + + VVSMGNPH I VE + + + S Sbjct: 121 PIFDPKLIPFYIS----QYQKTYILFLPTQIILCG-VVSMGNPHCIILVE-KIENIQVTS 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ L H F E VN+S ++ + ++ LR +ERGVG T ACG+AACA+V Sbjct: 175 LGSALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +V+V + GG + + W +N ++MTG ++G +++ Sbjct: 235 YESVNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274 >gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] Length = 285 Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 S + F K +G+GN +++D R +T + AL D ++ + Q+ D Sbjct: 3 SRLSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQE-GAD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118 +R+ N DGSE + CGNG+RC+ RFL + ++ T+ G +V + DG ++V Sbjct: 62 FSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTV 121 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--D 174 DMG P L IP LA+ +K+ R +G VSMGNPH + F+E+ Sbjct: 122 DMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGREWAVT----AVSMGNPHCVVFLEEGGS 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L DL G L HP F E N A+V L LR WERG G+T ACG+ ACA++V Sbjct: 178 LEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACAALV 237 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 A+ + +V++ GG L I W + HV+MTG A + G Sbjct: 238 AAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282 >gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 278 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 143/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D ++L+ + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + + N + MG PH I FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L I+W D++ VFMTG A++ + G+ Sbjct: 235 LNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGEY 276 >gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] Length = 288 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 135/289 (46%), Gaps = 10/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + + AL+ DQ++L+ D Sbjct: 1 MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC VRF+ + + + + G+L +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + +P A D + P+ R VVSMGNPHA+ V DD+ + Sbjct: 121 GSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVV-DDVETF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A G L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 180 PVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283 + V+V+ GG L I W + M G A +EG ++ Sbjct: 240 RGLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA 288 >gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] Length = 266 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F+ + ET G+L AK DG SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLFI-----GRDVLIETKAGLLDAK-AVDGGASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPL+ + D + PV+ L P V++GNPH IFFV DDL + Sbjct: 113 RLEWDAIPLSYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFV-DDLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37] gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37] Length = 279 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 18/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 +++ + F KM G+GN +VID R +T + A+ FDQ+ LI + Sbjct: 8 RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPG--GNA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + +N DGS +CGN RC+ R L + + T G L A + +G SV+M Sbjct: 66 DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+LDW+ IPLA D + +P SMGNPH FFV D DL Sbjct: 126 GPPVLDWQNIPLASEVDTLHL----------PIDGDPVATSMGNPHCTFFVA-DAEAVDL 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG + HP++ + N+ +A + + L +R WERG GLT A GS++CA+ VA+ Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 T RAV + + GG L ++W ++ V+MTG + G L T +W+ Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277 >gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] Length = 275 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PILD IP K + + FL VSMGNPH + V DD+ +A Sbjct: 121 VPILDPAQIPFKA---KKFEKTYLLQSAQQTFLCG--AVSMGNPHVVLEV-DDITQAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +H F +GVN+ +V + + + LR +ERG T ACGS ACA+ V K Sbjct: 175 DVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W + ++MTG A++ ++G++ + Sbjct: 235 LGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275 >gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 297 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 129/284 (45%), Gaps = 10/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM+G+GN +V D ++ + + ++ DQI+L+ D Sbjct: 11 SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDF 70 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV CGNG RC F+ + T ET G L+ +G+I+V M Sbjct: 71 RYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L +P + D + V MGNPHA+ V + Sbjct: 131 GVPRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVAS-AAEAPV 184 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP F E N+ + + LR WERG G T ACGS ACA+VVA Sbjct: 185 ATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWD 244 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 + + AV+V + GG L IEW H V MTG A+ ++G + Sbjct: 245 ELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 288 >gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] Length = 278 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 136/284 (47%), Gaps = 12/284 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VD 61 ++F KM G+GN +VID + + L+ DQI+L+ D + Sbjct: 1 MRLEFTKMHGLGNDFVVIDGTRQDVRLDEATLRQLADRHFGIGCDQILLVEPPGDPTQAL 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ + + + ET+ G +V D + V+ Sbjct: 61 FRYRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+P+ + IPL + D + + H VSMGNPHA+ V DD+ Sbjct: 121 MGQPVFTPEQIPLVAEHEA---DAYTLDVQGHAITLG--AVSMGNPHAVLLV-DDVASAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F VN+ A + +DLR +ERGVG T ACGS A A++ Sbjct: 175 VTEVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRRR 234 Query: 240 HKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 + + V V + GG L++ W V++TG A + G +D+ Sbjct: 235 NLVDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278 >gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] Length = 284 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 16/286 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D R +N + + D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE + CGN RC+ ++L + T +T+ GI + K + G + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + M I + + VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPSDEPVNYD-GKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL+S G L HP+F + N+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 174 TKVDLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 234 AFLTGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] Length = 294 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 149/290 (51%), Positives = 194/290 (66%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + Sbjct: 2 ASTAPFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAY 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ I+N DG+ Q+CGNGMRCVV+ L + +K+FTFET GIL A+E+ DG+ISVDMG Sbjct: 62 YVDILNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGM 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L Sbjct: 122 PHFGWQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HP+F E N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+ +T Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRT 241 Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+V++ GG L +EW DN+HV +TG A+ E+ G D TG W + E Sbjct: 242 GRSVNLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291 >gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21] gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21] Length = 278 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + + T ET GIL + + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L K IP+ + +R P+N L N SMGNPH + FV DD+ Sbjct: 119 VNMGPPRLTRKEIPMLGEPE----ERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 174 SFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++ + Sbjct: 234 VLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278 >gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] Length = 301 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 5 VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 65 IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 125 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 185 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 244 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + + Sbjct: 245 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 292 >gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12] gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12] Length = 280 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 5/280 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLANRHFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ ++ T G L + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ IP + + + VS+GNPH + VE D+ D+ Sbjct: 121 IPILEPSKIPFNAKRAEKTYLLQTDTAESKMQTFLCGAVSLGNPHCVLDVE-DVQATDVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F +GVN+ +V + + LR +ERG T ACG+ ACA+ V K Sbjct: 180 GIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + V V + GG L I W + ++MTG A+ ++G++ Sbjct: 240 LDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279 >gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917] gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917] Length = 360 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + L D +++ A Sbjct: 1 MLQFSKYQGLGNDFILLEGRSGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVALPPAAA 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +++ ET G+++ DG Sbjct: 61 G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTLLADGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L + +P A + + MGNPH + V DDL Sbjct: 120 IQVDMGRPFLQPEQVPTALPVGAAGLPQGEVELDGRRLAL--AAAGMGNPHVVVTV-DDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G L P+F N+ +V S L +R WERG G T ACG+ ACA++VA Sbjct: 177 DQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L V + GG L I W D + + MTG A+ ++G L Sbjct: 237 AHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281 >gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021] gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021] Length = 306 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 10 VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 70 IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 130 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 190 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 249 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + + Sbjct: 250 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 297 >gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] Length = 277 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + + AI D ++LI A D F+ Sbjct: 1 MKFTKMEGLGNDYVYVNCLEEQIADPSKTAIEVSDRHFGIGSDGLILIKPSDKA--DFFM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSISV 118 + N DGS+ + CGNG+RCV +F+ + T +T+ GI N S+ V Sbjct: 59 EMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P LIP+ D + F G + VSMGNPH I ++ DD+ + Sbjct: 119 NMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRIT----CVSMGNPHCITYM-DDIKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + +F + VN V ++L +R WERG G T ACG+ ACA VAS Sbjct: 174 EIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 N +V+VK+LGG L I W + + V+M G A + G+ Sbjct: 234 NGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGE 274 >gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] Length = 282 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 11 MEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V+D +T + AL+ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 CDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P+ Sbjct: 61 CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120 Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P A D R + P++ R VSMGNPHA+ V DD+ Y + G Sbjct: 121 PAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVLEEG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+V A + Sbjct: 180 PLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239 Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 V+V GG L I W + + M G A +EG++D+ Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282 >gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101] gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101] Length = 298 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 24/287 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC--------HDNITSDAINALS-TDDNTHFDQIMLIH 53 ++ + F KM G+GN +V+D R +T A+ FDQ+ +I Sbjct: 19 TNGLPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQLAVI- 77 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + DA + N DGS +CGN RC+ RFL + S T RG L A++ D Sbjct: 78 --TTGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAAQDMGD 135 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +V+MG+P LDW+ IPLA + + ++ P++ P MGNPH FFV Sbjct: 136 RLTAVNMGQPQLDWQDIPLAHAMETLEL------PIDGA----PTATGMGNPHCTFFVA- 184 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL DL FG + HP++ E N+ IA++ + + +R WERGVG+T A GS++CA+ Sbjct: 185 DLAAIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSSSCATA 244 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ T R V + + GG L I+W ++ V+MTG + G L Sbjct: 245 VAAARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTLT 290 >gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] Length = 288 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 8/279 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN------THFDQIMLIHDFQDASVD 61 F KM G+GN +VI + T + I A++ DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A++R N DG +CGNG RCV L + + F+T+ G L D ++VDMG Sbjct: 65 AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P LDW IPLA + +R +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 PPGLDWTQIPLAEEMNT-ERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+L+ HP+F EGVN+ A + S + + L+ WERG GLT ACG+ ACA+ VA+ Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R V+ G L IEW + + HV MTG E+ GKL Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282 >gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] Length = 280 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 18/288 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ + A + D ++LI + A D Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119 Query: 116 ISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P+L + I A M + + V MGNPH + FV DD Sbjct: 120 VTVDMGTPLLSNPGQI--ATKTGGMLAETILADGKEYK----GTFVCMGNPHVVIFV-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ V Sbjct: 173 IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 A+ HK R V+M GG L I W + + HV+MTG A K +EG++++ Sbjct: 233 AAVLNHKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIEM 280 >gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] Length = 284 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 14/279 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVD 61 + + F KM G+GN +V+D R ++T ++ FDQ+ LI + ++ D Sbjct: 10 TPLPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPAD 69 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS +CGN RCV R L + + T RG L+A ++ DG SV+MG Sbjct: 70 AHLLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMG 129 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L W +PLA D ++ P MGNPH FFVE+ L Sbjct: 130 QPQLLWDQVPLAEEVDTLEL----------PIEGGPTATGMGNPHCTFFVEN-ADLIPLE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 FG HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ Sbjct: 179 EFGPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGL 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R V V + GG L I+W ++ V+MTG G Sbjct: 239 TGRKVQVDLDGGTLWIDWREDG-VWMTGPTMHVSSGSFT 276 >gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] Length = 306 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 148/287 (51%), Positives = 190/287 (66%), Gaps = 1/287 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA+I Sbjct: 10 VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + +K+F F T+ G+L A+E+ DG ISVDMG P Sbjct: 70 IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+ +T+R Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAA 296 >gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] Length = 280 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 18/288 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ A ST D ++LI + A D Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119 Query: 116 ISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P+L + I A M + + V MGNPH + FV DD Sbjct: 120 VTVDMGTPLLSNPGQI--ATKTGGMLAETIPADGKEYK----GTFVCMGNPHVVIFV-DD 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ V Sbjct: 173 IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 A+ HK R V+M GG L I W++ + HV+MTG A K +EG++++ Sbjct: 233 AAVLNHKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIEM 280 >gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3] gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3] Length = 280 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 5/280 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP + P + + VSMGNPH + VE D+ D+ Sbjct: 121 IPVLEPGRIPFNAKKMEKTYLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIEAADVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F +GVN+ ++ + + LR +ERG T ACG+ ACA+ V K Sbjct: 180 GIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + V V + GG L I W + ++MTG A+ ++G++ Sbjct: 240 LDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279 >gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 288 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 129/284 (45%), Gaps = 10/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM+G+GN +V D ++ + + ++ DQI+L+ D Sbjct: 2 SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG+EV CGNG RC F+ + T ET G L+ +G+I+V M Sbjct: 62 RYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L +P + D + V MGNPHA+ V + Sbjct: 122 GVPRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVAS-AAEAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP F E N+ + + LR WERG G T ACGS ACA+VVA Sbjct: 176 ATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWD 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 + + AV+V + GG L IEW H V MTG A+ ++G + Sbjct: 236 ELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 279 >gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] Length = 288 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 12/288 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +T + + AL+ DQ++L+ VD Sbjct: 1 MKLPFTKMQGAGNDFVVLDGTAGDLGLTPERVRALADRHFGIGADQLLLVERPSLDGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ + + + + G++ +G + VDM Sbjct: 61 KYRIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P + + D + VN R VVSMGNPHA+ V DD Sbjct: 121 GSPVFEPARVPFDVAGLAGRRDGADTVYPLEVNG-ATRWISVVSMGNPHAVQLV-DDAEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 179 FAVLEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W ++M G A ++G +++ Sbjct: 239 RRGLLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIEL 286 >gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 285 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + S +S D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SIS 117 + N DGS+ CGNG+RCV ++ + + S + T GI L +DG + Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVALVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL + IP+ + +++ + H+ + + VSMGNPHAI ++ D L + Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVINEPLHVDGETY----HITAVSMGNPHAIVYM-DALKN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N +V +L +R WERG G T ACG+ ACA VAS Sbjct: 174 LDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233 Query: 238 CLHKTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGK 285 + V+VK+LGG L I W N V+MTG A ++G++D+ + + Sbjct: 234 LNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSSLE 284 >gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047] Length = 261 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +VID+ + + I FDQ++++ Q D RI N DGSEV+ C Sbjct: 1 MVIDLVSQYVKLKPHLIPRWADRHFGIGFDQLLVVEPPQSPKADFRYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC F+ + +K ET G++ + ++VDMG P L IP Sbjct: 61 GNGARCFALFVRDKKLTNKKHLIVETKGGVIELHVTNNNEVTVDMGVPTLQPSKIP---- 116 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F+ ++ +I +N L + VSMGNPH + VE D+ D+ + G L+ H F + Sbjct: 117 FEAKEQAISYIIDINGQPL-DISAVSMGNPHGVTLVE-DVKTADVETLGPLVEGHSRFPQ 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 N ++ S + LR +ERG G T ACG+ ACA+VVA +V+V + GG L Sbjct: 175 RTNAGFMQIISPSEIRLRVYERGAGETLACGTGACAAVVAGRLRGLLEESVTVHLPGGSL 234 Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLDI 281 I W + V MTG KK +EG++ + Sbjct: 235 NIVWPGEGQPVKMTGPCKKVFEGRIYL 261 >gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] Length = 283 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 16/286 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++F KM GIGN + +D + +S D +++I + A D Sbjct: 1 MKINFTKMHGIGNDYVYVDGFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSI 116 +R+ N DGSE + CGN RC+ +F+ +K+ + ET+ GI L ++ + + Sbjct: 59 RMRMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+ IL + IP+ + I + VSMGNPH + + E D+ Sbjct: 119 EVDMGKAILSPQDIPVISDQETFINTPISIDNE----IYYGTCVSMGNPHVVVYCE-DVD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L S G +P+F E +N ++ ++ +R WERG G T ACG+ ACA V+ Sbjct: 174 LLSLESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACAVAVSC 233 Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K N ++VK+ GG L I + ++ V M G A K ++G ++ Sbjct: 234 VLNGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279 >gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6] gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6] Length = 282 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 11/283 (3%) Query: 11 MEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V+D +T + AL+ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 CDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P+ Sbjct: 61 CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120 Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P A D R + P++ R VSMGNPHA+ V DD+ Y + G Sbjct: 121 PAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVLEEG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A + Sbjct: 180 PLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239 Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 V+V GG L I W + + M G A +EG++D+ Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282 >gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] Length = 275 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+++ IP F ++ ++ +SMGNPH + VE D+ ++ Sbjct: 121 VPVIEPSQIP----FKAKKSEKTYLLQTPMQ-TYLCGAISMGNPHCVIQVE-DVQTVNVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ L +H F +GVN+ +V + + LR +ERG T ACG+ ACA+ K Sbjct: 175 EIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQDK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L+I W + ++MTG A+ ++G++ + Sbjct: 235 LDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275 >gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1] Length = 274 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V DG I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + K +++ V + VSMGNPH + V DD+ ++A Sbjct: 121 PIWEPNKIPFTAN--KFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DDIETANVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274 >gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512] Length = 351 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 150/293 (51%), Positives = 199/293 (67%), Gaps = 5/293 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 52 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V++D+ YDLA Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDA 344 >gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] Length = 311 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 11/287 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D +T + AL+ DQ++++ D Sbjct: 24 KLSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALANRHFGIGADQLLVVEKPTVDGADF 83 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDM Sbjct: 84 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 143 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ + + A + R + P++ R VSMGNPHA+ V DD Y Sbjct: 144 GAPVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAEAY 202 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+ +H F + VN ++ S + LR +ER G T ACG+ ACA+V A Sbjct: 203 PVLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAGIR 262 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A+ +EG++D+ Sbjct: 263 RGLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDL 309 >gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601] gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601] Length = 279 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T A++ FDQ+ LI DA + Sbjct: 11 LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALIE---TGEGDARL 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T T RG L A++ DG SV+MG P Sbjct: 68 TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D + P MGNPH FFVE+ DL +FG Sbjct: 128 LDWQDIPLASEMDTLAL----------PIEGTPVATGMGNPHCTFFVEN-AEAIDLEAFG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A + + L +R WERGVG+T + GS++CA+ VA+ T R Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V++++ GG L I+W D+ V+MTG ++G W++ Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSFGP---AWLEAA 278 >gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 301 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 151/298 (50%), Positives = 197/298 (66%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G LD TG W + + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSRDGTQEAG 299 >gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N] gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N] Length = 298 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 9/282 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D ++T + AL DQI+L+ D R Sbjct: 10 NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGVGADQILLVEPATRPDADFRYR 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + + E + G++V E D ++V+MG Sbjct: 70 IFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEMGTT 129 Query: 124 ILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 D +P + + +D ++ P+ + V++ NPHA+ V D+ + Sbjct: 130 RFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIEL-SAVAISNPHAVQVVA-DVDQAPV 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F+ VN ++ ++ LR +ERG G T ACG+ ACA+V A Sbjct: 188 SEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGIRRG 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W+ + MTG A+ + G++DI Sbjct: 248 LLDSPVRVQTRGGALTIAWN-GEQLRMTGPAESVFSGQVDID 288 >gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 287 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 140/286 (48%), Gaps = 13/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + I+ + + +S D ++LI A+ D + Sbjct: 5 LRFTKMQGIGNDYVYINGFQERIDSPGELARKISDRHFGIGSDGLVLILPS--ATADVRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKEN-RDGSI---SV 118 R+ N DGSE + CGN +RCV +++ + T ET G+ + + G + +V Sbjct: 63 RMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGATV 122 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMGEP L IP+ + + RF PV+ + L VSMGNPHA+ F++ + Sbjct: 123 DMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG-ID 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G HP+F + N A V S + +R WERG G T ACG+ ACA VA Sbjct: 182 DLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVAVAC 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V V++ GG L I W + +NHV+MTG A + G+ I Sbjct: 242 VLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287 >gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z] gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z] Length = 274 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 102/281 (36%), Positives = 138/281 (49%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I L+ FDQ++L+ D +D Sbjct: 1 MHFSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V DG I V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PI + IP A F+K R I V VSMGNPH + VE D+ ++A Sbjct: 121 PIWEPAKIPFNANKFEKNYILRTDIQTV------LCGAVSMGNPHCVIQVE-DIKTANVA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN +V + LR +ERG G T ACGS ACA+ Sbjct: 174 QLGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 234 LDSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274 >gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] Length = 261 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 10/266 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + + I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCITQNVFFSPELIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + S + T +G ++ D + V+MG P + IP Sbjct: 61 GNGARCFARFVRMKGLTNKYSLSVSTKKGKIILSIEEDDQVCVNMGVPEFEPSKIP---- 116 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F ++ +I V+ L VSMGNPH + VE D+ ++ G LL H F E Sbjct: 117 FRAKQAEKTYIMRVDEQTLFCG-AVSMGNPHVVTVVE-DIATAEVERIGPLLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN +V + + ++LR +ERG G T ACGS ACA+V + V+V + GG L Sbjct: 175 RVNAGFMQVVNRQQINLRVYERGAGETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRL 234 Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLD 280 I W ++MTG A ++G+L Sbjct: 235 EISWQGPGQPLYMTGPATHVFDGQLS 260 >gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 301 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 150/297 (50%), Positives = 198/297 (66%), Gaps = 5/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREA 298 >gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] Length = 269 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 29/288 (10%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 +RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ I F + VSMGNPH + FV DD+ Sbjct: 120 VTVDMGVP-LETGTIDFDGEFPFL-----------------STQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++ ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RTVNLSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 276 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 101/283 (35%), Positives = 151/283 (53%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V + +N++ AI+ + D ++ I ++A D + Sbjct: 1 MEFTKMHGLGNDFIVFAGHQQLPENVSQLAIDLCNRFFGIGADGLVYILPSENA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117 RIIN DGSE + CGN +RCV +++ T ETI G+ L K+ + ++ Sbjct: 59 RIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVATVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ +P D++ + F VSMGNPH + +V DD + Sbjct: 119 VDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSFT----AVSMGNPHCVIYV-DDAAN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HPMF +N+ V S D+R WERG G T ACG+ ACA+VV+S Sbjct: 174 FDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R +V + GG L IEW + +NHV+MTG A + + G Sbjct: 234 LNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276 >gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera] Length = 307 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 19/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F K G+GN +++D R + +T + L D ++ + Sbjct: 19 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGIN-G 77 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ ++SFT T G++V + DG + Sbjct: 78 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 137 Query: 117 SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 VDMG+PIL +P +K + + ++ V+ N VSMGNPH + F Sbjct: 138 KVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVS----WNVTCVSMGNPHCVTFGTK 193 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + +LA G H MF N +V S L +R WERG G T ACG+ Sbjct: 194 GGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTG 253 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 ACA VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 254 ACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307 >gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] Length = 269 Score = 328 bits (842), Expect = 5e-88, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 +RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P D +D D F VSMGNPH + FV DD+ Sbjct: 120 VTVDMGVP----------LETDTIDFD--------GEFPFLSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] Length = 285 Score = 328 bits (842), Expect = 5e-88, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 12 MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 71 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T +G +V DG I V+MGE Sbjct: 72 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 131 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + K +++ V + VSMGNPH + V D++ ++A Sbjct: 132 PIWEPNKIPFTAN--KFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DNIETANVAE 185 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 186 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 245 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 246 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285 >gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] Length = 278 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + AI + + D ++LI A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEETVADPRQVAIQVSNRNFGIGSDGLILIMPSTTA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + +K T ET GIL + + + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKVR 118 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P L IP+ + ++ ++ I N SMGNPH + FV DD+ Sbjct: 119 VNMGPPRLARSEIPMRGDAAPQVVGEQLTILDR----TFNITCASMGNPHCVIFV-DDVA 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + ++++G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 174 GFPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTAAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 234 VLNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276 >gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 120/279 (43%), Positives = 161/279 (57%), Gaps = 6/279 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG + + A++ D + FDQ+M++HD DAF+RI Sbjct: 38 RFLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRI 97 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV + + ET G+L + + + +VDM Sbjct: 98 YNTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDM 157 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPL+ F R IGP++ L +P V+MGNPHA+FFVE D +DL Sbjct: 158 GRPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDL 217 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G +L HP+F E N+S+A+VT E++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 218 ARIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLR 277 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R SV + GG L +EW ++HV MTG EG L Sbjct: 278 MIGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316 >gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] Length = 275 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 154/283 (54%), Gaps = 14/283 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++DF KM G+GN +V D R ++ A++ DQ++++ A D Sbjct: 1 MLIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 AF+RI N DGSE +CGN RCV L ET+ G+L+A+ N +G I +DMG Sbjct: 59 AFMRIYNPDGSESGACGNATRCVADLLHRDGIAAP-CMETVAGLLLAEINGNG-ICIDMG 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L W+ +PLAR D + P+ L+ P SMGNPHA FFV DL D+ Sbjct: 117 QPGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFVA-DLAELDIP 169 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +HP+F E N+ A++ S + LR WERG GLT ACG+ ACA++V + Sbjct: 170 VTGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGL 229 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 R V++ GG LLI W + + HV MTG A + G++ +++ Sbjct: 230 AEREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272 >gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] Length = 277 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 108/281 (38%), Positives = 156/281 (55%), Gaps = 7/281 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 MQ+S F KM G GN +V++ +D + AL+ FDQ++ I A Sbjct: 1 MQAST-PFVKMNGAGNDFVVVNALETPFTPDADRVRALADRRTGEGFDQLIAIEPSDRA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DAF+R+ N DG V++CGN +RCV L S T +T+ G +A+ ++VD Sbjct: 59 -DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P LDW+ IPLA + D + IGP++ + P VSMGNPH +FF D L Sbjct: 118 MGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFT-DRLDDVF 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+++ HP+F +GVN+ A V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 176 VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAASRR 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T R+ +V + GG L I+W + HV MTG + E G+L Sbjct: 236 GLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276 >gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] Length = 297 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 124/276 (44%), Positives = 170/276 (61%), Gaps = 3/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T+ A+++ +DQ+M++ + +AF+RI Sbjct: 16 FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L G SVDMG P Sbjct: 76 NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F +GP++ L +P VVSMGNPHAIF+V DD++ YDLA FG L Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDIHAYDLARFGPL 194 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R V Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFDP 290 >gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217] gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217] Length = 275 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ + FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDGS+ V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ D IP K+++ PV +SMGNPH + V DD+ + Sbjct: 121 VPVTDPSNIPFKAK--KVEKTYLLQTPVQTFLCG---AISMGNPHCVIEV-DDIDTVAVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H FS+GVN+ ++ + + LR +ERG G T ACG+ ACA+ K Sbjct: 175 EIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDK 234 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +R V V + GG L I+W + ++MTG A+ ++G++ + Sbjct: 235 LSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275 >gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] Length = 278 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFINEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + N + MG PH I FV DDL Sbjct: 119 VNMGKPSFKRKDIPMQGDPKSDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDLEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 235 LNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGEY 276 >gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] Length = 277 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 Q+ + F KM G+GN +V+D R N++ A+ FDQ+ +I + Sbjct: 5 QTPGLPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAG 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + N DGS +CGN RC+ RFL R S T RG L AK+ +G SV+M Sbjct: 62 DAQLTFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W +PLAR D + +P MGNPH FFV+ D+ DL Sbjct: 122 GHPQLKWDEVPLAREMDTLHL----------PIEGDPVAAGMGNPHCTFFVK-DVEAVDL 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G P+F E N+ +A++ + +R WERGVG+T A GS++CA+ VA+ Sbjct: 171 SDIGPRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARRG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T RAV + + GG L I+W D+ V+MTG + G Sbjct: 231 LTGRAVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTFT 269 >gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 318 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 151/294 (51%), Positives = 200/294 (68%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + ++ FAKM G+GN+I+V DMRG D IT +A L++D T FDQIM IHD + A Sbjct: 18 VMATRAAFAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGT 77 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +I IINCDG++ Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDM Sbjct: 78 DNYIAIINCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDM 137 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P DW+ IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L Sbjct: 138 GKPRFDWQDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYEL 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG LL HP+F E N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++ Sbjct: 198 EKFGPLLEHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTR 257 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 +T R V+V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + + Sbjct: 258 RTGRTVTVNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSRDAQSHK 311 >gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894] Length = 301 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 151/298 (50%), Positives = 198/298 (66%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + + Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSRDGTQEAG 299 >gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] Length = 282 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 137/281 (48%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D + + A+ D ++LI DA + Sbjct: 1 MKFIKMHGAGNDYVYVDGFQQDVHRPEELAVRISDRHFGVGSDGLILILPSD--CADARM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDG------SI 116 R+ N DGSE Q CGNG+RCV ++L + + T ET+ G+L D + Sbjct: 59 RMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG+P L IP+ + I N F VSMGNPH + +V DD+ Sbjct: 119 TVNMGQPRLQRGQIPMTGPQQDQALE-VEIRVKNRTFT--ASCVSMGNPHCVVYV-DDVE 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +D+A +G LL HP+F E +N+ + S + RTWERG G T ACG+ A A VA Sbjct: 175 QFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTVAG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +T R + + GG L +E+ D+ V MTG A++ + G Sbjct: 235 FLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275 >gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307] gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307] Length = 357 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 12/278 (4%) Query: 8 FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R + D L D ++L Q D ++ Sbjct: 19 FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I+N DGSE + CGNG+RC RFL + ET G+++ + ++VDMGE Sbjct: 78 ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137 Query: 123 PILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ IP + + + ++ V MGNPHA+ V DDL D Sbjct: 138 PFLEPASIPTNLAAGTPLPDGELQVAGISLQV----AAVGMGNPHAVVQV-DDLESLDFD 192 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +HP F N+ +V + + L +R WERG G T ACG+ ACA+VVA+ Sbjct: 193 RLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRGA 252 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V++ GG L I+W NH+ M G A +EG L Sbjct: 253 CARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVL 290 >gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R] Length = 272 Score = 327 bits (840), Expect = 9e-88, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R AI + D ++LI A D Sbjct: 5 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 +RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G Sbjct: 63 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ I F + VSMGNPH + FV DD+ Sbjct: 123 VTVDMGVP-LETGTIDFDGEFPFL-----------------STQVSMGNPHLVTFV-DDI 163 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 164 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 223 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 224 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 271 >gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] Length = 277 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KMEG+GN + +D + + I +S D +++I D Sbjct: 1 MRLHFTKMEGLGNDYIYVDGINQDVCMDKEFIKKISDRHFGIGSDGMIVILPSDK--YDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE + CGNG+RC +F+ + ET G+ + + DG Sbjct: 59 KMRMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGA 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+PIL IP + + M I + N +SMGNPH + FV DDL Sbjct: 119 KVDMGKPILTCSDIPCNYNQETMIDQTIVIDD----YKYNLTSISMGNPHTVTFV-DDLE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G H MF EGVN V + + +R WERG G T ACG+ ACA++ AS Sbjct: 174 TLDLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T V+V++LGG L IE+ N+ + M+G A +EG +++ Sbjct: 234 YLNNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277 >gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] Length = 304 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 150/297 (50%), Positives = 197/297 (66%), Gaps = 5/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 5 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 65 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ + Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREA 301 >gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130] gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130] Length = 288 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 135/285 (47%), Positives = 171/285 (60%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + V F+KM GIGN+I+V D+RG D +T +A AL D +T FDQ+M IHD D + DA Sbjct: 3 TPVSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDAT 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 IRI N DGS +CGNG RCVV +L R F F L AK DG ISV+MG P Sbjct: 63 IRIYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGVP 122 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPL+ F +GP+ L P V ++GNPH +FF E+D Y L F Sbjct: 123 RFDWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDKF 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G +L H +F + N+SIA+VTS ++ LRTWERG GLT ACGSAACA+VV + T Sbjct: 183 GPMLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELTE 242 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 R V+V + GG L IEW D+N + MTG A E++G D TG W + Sbjct: 243 RHVTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGWER 287 >gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] Length = 284 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 7/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D ++T + L+ DQI+++ + D Sbjct: 1 MKIKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLADRHFGIGADQILVVEPAEAGEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+ ++ ++K +T++G++ + DG + V M Sbjct: 61 KYRIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVSM 120 Query: 121 GEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHY 178 G P + +P + + F V + F V SMGNPH + V DD+ Sbjct: 121 GTPSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIESA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + HP F VN+ + + ++R WERG G T ACG+ CA+ S Sbjct: 180 PVKELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSIE 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 L + + GG L + W V + G A ++ ++++ Sbjct: 240 LGVLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284 >gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] Length = 276 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN ++ID + I ++ DQ++L+ S D Sbjct: 3 VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGNG RC RF+ R + E ++ + + VDMG Sbjct: 63 RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHDVEVDMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IPL R + ++ D G + VSMGNPHAI V D + + L Sbjct: 123 PNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRV-DAVDNGSLER 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F EG N + +++ LR +ERGVG T ACGS ACA+VV + Sbjct: 177 LGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+V++ GG L I W +N V MTG +EG + + Sbjct: 237 DDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276 >gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] Length = 284 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GNKI+V DMR NIT A+ AL+ + THFDQIM IH D I I Sbjct: 4 PFSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ ++CGNG RCV+ +LT+ +SF ET GI+ K +G ISV+MG P D Sbjct: 64 WNADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFD 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P+A + GP L++ +VS GN HAIFFVE ++ H L +G Sbjct: 124 IKNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA VTS SL LRTWERG GLT ACG+AACAS VA+ T R + Sbjct: 179 LEHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 +V +LGG L I + +++H+ MTG + E+ G L TG + K + Sbjct: 239 NVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKKDS 282 >gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] Length = 278 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D ++L+ + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + + N + MG PH I FV DD+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 235 LNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGEY 276 >gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] Length = 275 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 139/278 (50%), Gaps = 14/278 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62 M+ F KM G+GN +VID R IT ++ FDQ+ +I ++ AS DA Sbjct: 1 MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + + + T RG L AK+ +G SV+MG Sbjct: 61 HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ D ++ P MGNPH FFVE D L Sbjct: 121 PQLLWDEIPLSEEMDTLEL----------PIEGAPTATGMGNPHCTFFVE-DAELIPLEE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ IA V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V + + GG L I+W ++ V+MTG +G Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGSFT 266 >gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A] Length = 271 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 29/285 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R + AI D ++LI A D Sbjct: 2 TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P ++ + VSMGNPH + F+ DD+ Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + R V M GG + IEW + H+ MTG A K ++G++ Sbjct: 221 AFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3] Length = 297 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 150/295 (50%), Positives = 198/295 (67%), Gaps = 5/295 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + Sbjct: 1 MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDM Sbjct: 61 DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDL Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240 Query: 241 KTNRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 +T R V++ + L IEW + ++HV MTG + EW G+LD TG W + Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSRDA 295 >gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H] gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H] Length = 257 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 101/276 (36%), Positives = 139/276 (50%), Gaps = 22/276 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID R + + I L DQ++L+ A D Sbjct: 1 MTLSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R N DGSE +CGN RCV +F+ + T +T G+L ++ D +VDMG Sbjct: 61 HVRFFNPDGSEAGACGNASRCVAKFVGG-----APTLQTAAGLLPTAQDGD-LFTVDMGT 114 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ +PL+R+ D + HL L + SMGNPHA F + + Sbjct: 115 PRLDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLFG----DAFRAEA 159 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L + P+F E N+ A++ S + LR WERG GLT ACGS ACA+VV + T Sbjct: 160 LGPGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLT 219 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 R +V M GG L I W ++ HVFMTG A + G Sbjct: 220 ERTCTVTMDGGDLRITWREDGHVFMTGPAVTVFHGT 255 >gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] Length = 298 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 132/289 (45%), Gaps = 14/289 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDA 58 +Q +DF K G+GN +++D R DAI + D ++ Sbjct: 7 LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ- 65 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RF+ +S+ T+ G ++ + DG Sbjct: 66 GCDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 ++VDMG P L +P + D V VSMGNPH + F E D Sbjct: 126 VAVDMGPPTLKGAEVPTKLPVNA-DGAVVKQPLVVDGKTWLVTCVSMGNPHCVTFGEQDA 184 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + L G L H +F N +V S L +R WERG G T ACG+ A Sbjct: 185 KGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGA 244 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 CA VVA+ + R V + GG L IEW + NNHV+MTG AK + G Sbjct: 245 CAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293 >gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 278 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 1 MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG P Sbjct: 61 VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LDW+ +PLAR+ D + +P SMGNPHA FF++D L + + Sbjct: 121 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 170 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 229 Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282 R +V M GG L + W + HV MTG A + G D + Sbjct: 230 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 274 >gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] Length = 278 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ G D+ + A D ++L+ A+ D Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPS--AAADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---SISV 118 +R+ N DGSE + CGN +RCV + R + + ET+ G++ + DG ++ V Sbjct: 59 MRVFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+ IP+ + + G + + VSMGNPH + F DL Sbjct: 119 DMGRPRLERAEIPMRGPAGPVVGEVLDAGERSFMVT----AVSMGNPHCVVFGA-DLDDA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +G LL HP F N+ V S + +R WERGVG T ACG+ ACA VA Sbjct: 174 GFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 +T R V V++ GG LLIEW D+ V+M+G A++ ++GK Sbjct: 234 TGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274 >gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652] gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 301 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDA 294 >gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 279 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 104/286 (36%), Positives = 141/286 (49%), Gaps = 18/286 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 1 MMTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG Sbjct: 61 LVRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGR 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ +PLAR+ D + +P SMGNPHA FF++D L + + Sbjct: 121 PALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA 170 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 171 -GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 229 Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282 R +V M GG L + W + HV MTG A + G D + Sbjct: 230 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 275 >gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166] Length = 276 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +VID+ H +I FDQ++++ Q+ VD Sbjct: 1 MLLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I VDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + G L VSMGNPHA+ V D + + Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAVSMGNPHAVLRV-DSVERAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] Length = 277 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ S+ +S D +++I+ A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + S + ET+ GI L ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ + Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYR----MTCVSMGNPHAVVFIDQDVKEF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275 >gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 278 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 130/278 (46%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM +GN ++ID + ++ S+ I L+ FDQ++L+ +D Sbjct: 1 MRFSKMCSLGNDFVIIDAVTQNVHLRSEFICRLANRHTGIGFDQLLLLEPPNSPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ RF+ +K+ T + I V+MGE Sbjct: 61 RIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP K + + + L VSMGNPH I VE L + Sbjct: 121 PDFFPQTIPFRS---KTIKKIYELDVAEQKLLCGI--VSMGNPHCIIQVE-KLDSDQIKL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP F EG N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 IGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V+ GG L I W H ++MTG A ++G + Sbjct: 235 DEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDGVI 272 >gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays] gi|194688384|gb|ACF78276.1| unknown [Zea mays] gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays] gi|219888355|gb|ACL54552.1| unknown [Zea mays] Length = 352 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 13/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 68 LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVND-ADYT 126 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF L + SFT T G ++ + DG + VDM Sbjct: 127 MRIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDM 186 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 GEPIL IP K ++ + VSMGNPH + F ++ + Sbjct: 187 GEPILSGADIPTKLVATK-NKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQI 245 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G H MF N +V S L +R WERG G T ACG+ ACA VVA Sbjct: 246 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 305 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 306 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350 >gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 106/275 (38%), Positives = 157/275 (57%), Gaps = 7/275 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM G GN + D R T++ I ++ D DQ++ + +DA+ D F+R Sbjct: 1 MKLWKMNGAGNAFAIFDARSTAFTPTTEQIRKIAADLK--ADQVIAME--RDATKDVFMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGSEV +CGN RCV + + T +T +L A +G I+VDMG P + Sbjct: 57 IWNSDGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQM 116 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPL+ D D IGP++ L P VVSMGNPHA+FFV+ D+ YD+ + G Sbjct: 117 GWEDIPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVK-DVAAYDIPAIGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F +G N+ A+V E++ LR WER GLT ACG+ ACA++V + T R Sbjct: 175 LVEWHPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRK 234 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + GG L I+W + ++HV+MTG + E+E ++ Sbjct: 235 ARMILDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269 >gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] Length = 323 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 18/289 (6%) Query: 5 MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++ID R N + + D ++L + A Sbjct: 1 MLQFSKYQGLGNDFVLIDGREGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 D ++I N DGS + CGNG+RC+ RFL + + + ET+ GI+ DG Sbjct: 60 DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I VDMG P LD + IP + + + H+G + N V MGNPH I VE Sbjct: 120 ICVDMGSPFLDPESIPTTLTIGSAGLPQGECHLGGTS----LNVAAVGMGNPHVIVPVE- 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL +G +L KH F N+ ++ S L++R WERG G T ACG+ ACAS+ Sbjct: 175 DLESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACASL 234 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VA+ L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 235 VAACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVLTP 283 >gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] Length = 271 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 29/285 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R + AI D ++LI A D Sbjct: 2 TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P ++ + VSMGNPH + F+ DD+ Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + R V M GG + +EW + H+ MTG A K ++G++ Sbjct: 221 AFINGLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265 >gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419] gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419] Length = 292 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 150/283 (53%), Positives = 189/283 (66%), Gaps = 1/283 (0%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GNKILV+DMRG D +T A L+ D T FDQIM IHD + A DA+I I+N D Sbjct: 1 MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS Q+CGNG RCVV+ L + +K+F F T+ G+L AKE+ DGSISVDMG+P W I Sbjct: 61 GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA F R IGP+ L +P VVSMGNPHAIF+VE+D+ YDL FG LL H Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+ +T RAV+V + Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240 Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 GG L IEW + ++HV MTG A+ EW G LD TG + + + Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTGIFERNEPE 283 >gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916] gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916] Length = 372 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 137/285 (48%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++I+ R + + + D I+L + Sbjct: 1 MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +S++ ET G+++ DG Sbjct: 61 G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P+L +P + + + + + L V MGNPH + V DL Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGEL--TINGDLLKVAAVGMGNPHVVVPVP-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L P F N+ +V ++LD+R WERG G T ACG+ ACA++VA Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L + V + GG L I W D VFMTG A+ ++G + Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDGVV 281 >gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] Length = 275 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 145/279 (51%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+G+GN +VID ++ AI L+ FDQ++L+ D +D Sbjct: 3 IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF L +++ T +G + K +DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP + ++ +I V + VVSMGNPH + V DD+ + + Sbjct: 123 PIFDPHKIPFVAKKE----EKTYILRVQEHTVICG-VVSMGNPHCVVLV-DDIDSAPVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F VN+S + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++++ GG L W V MTG A+ ++G++ I Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275 >gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] Length = 302 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 29/297 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G N L ID N T ++ D I+LI + A D Sbjct: 11 KINFTKMHGCKNDYLYIDCTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSKAA--DFR 68 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI--------RGIL------- 106 +RI N DGSE + CGNG+RCV +F+ ++ ET GI+ Sbjct: 69 MRIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGIIPENRIKV 128 Query: 107 ---VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + + +VDMG PI+ IP+ + ++ + +I + F VSMG Sbjct: 129 LQLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKDWYFT----CVSMG 184 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ FV DD DL G + +F N +V S L++R WERG G T Sbjct: 185 NPHAVTFV-DDTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGSGETL 243 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ACG+ ACAS A+ + V+V +LGG L+I++ H+FMTG + + G + Sbjct: 244 ACGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGSI 300 >gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] Length = 281 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVAEQP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] Length = 282 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 139/278 (50%), Gaps = 15/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R ++ + AL+ FDQ+ +I DA + Sbjct: 12 LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPA--PEADAHL 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + + T RG+L+A++ DG V+MG+P Sbjct: 70 TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W +PLA + D ++ P MGNPH FFV D L +FG Sbjct: 130 TLWSEVPLAEAMDTLEL----------PIEGTPTATGMGNPHCTFFVA-DAEAIPLDTFG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + + GG L I+W ++ V+MTG +EG+L + Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRLTPQ 275 >gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 281 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + N VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFIAEQP----EALYTLELANDQNINIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] Length = 323 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 15/292 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F+K +G+GN ++ID R + + A+ + D ++ Sbjct: 34 ASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPP-VGDT 92 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 D +RI N DGSE + CGNG+RC+ +F+ + + + T+ G++ + DG + V Sbjct: 93 DLTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVRV 152 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----- 173 DMGEPIL+ +P + + VSMGNPHA+ + D Sbjct: 153 DMGEPILEGAKVPTTLA-PTQGSTVVQQDLIVDGKTYKVSCVSMGNPHAVIYSCDGDTIK 211 Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D DLA G ++ +F N V + + + WERG G T ACG+ ACA Sbjct: 212 IDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGACAL 271 Query: 233 VVASGCLHKTNRA--VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VVA + +R V + GG L IEW+ ++NH++MTG A+ + G L + Sbjct: 272 VVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323 >gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299] gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299] Length = 331 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 16/290 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDF--QDASVDA 62 F K +G+GN +++D R + ++S+ L D ++ D Sbjct: 43 KFYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDY 102 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DG+E + CGNG+RC+ F+ K++ T+ G++ + DG +SVDM Sbjct: 103 SMRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDM 162 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------- 173 GEP LD +P + V+ VSMGNPH + F ++ Sbjct: 163 GEPTLDPPKVPCTFEATQDGAAVRAKMEVDGE-TWLVTAVSMGNPHCVTFGKEGECDEEG 221 Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + + L+ +G + KHP F N V + + + WERG G T ACG+ ACA+ Sbjct: 222 IKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTGACAT 281 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VVA+ +T R +V++ GG L IEW + +N V MTG A+ ++G + + Sbjct: 282 VVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331 >gi|238009464|gb|ACR35767.1| unknown [Zea mays] Length = 350 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 69 LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 127 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF+ FT T G +V + DG + VDM Sbjct: 128 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 187 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHY 178 GEPIL IP K ++ + VSMGNPH + F ++ + Sbjct: 188 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVDDL 246 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L+ G H MF N +V S L +R WERG G T ACG+ ACA VVA+ Sbjct: 247 KLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVL 306 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 307 EGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348 >gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] Length = 277 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ S+ +S D +++I+ A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS + CGNG+RCV +++ + S + ET+ GI L ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ + Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYR----MTCVSMGNPHAVVFIDQDVKEF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275 >gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] Length = 303 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 131/287 (45%), Gaps = 14/287 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D ++T + AL DQI+L+ D R Sbjct: 10 NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R E GILV + D ++VDMG Sbjct: 70 IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDMGST 129 Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + +P + D + P V++ NPHA+ V DD+ Sbjct: 130 RFEPSALPFDTAGLASRVQGQDTLWELEL-DAPAGLPRTVALSAVAISNPHAVQVV-DDV 187 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A G L+ HP F VN ++ ++ LR +ERG G T ACG+ ACA+V A Sbjct: 188 DTAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACGTGACAAVAA 247 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L + W+ + MTG A+ + G++DI Sbjct: 248 GIRRGLLDSPVRVQARGGVLTVAWN-GEQLRMTGPAESVFTGQVDID 293 >gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] Length = 318 Score = 325 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQD 57 M S+ + F+K +G+GN +++D R + + A+ + D ++ Sbjct: 26 MASAKPLTFSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPP-V 84 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ +F++ + + T+ G++ + DG Sbjct: 85 GDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQ 144 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173 + VDMG PIL+ +P + V VSMGNPHA+ + D Sbjct: 145 VRVDMGTPILEGPKVPTTLA-PTQGSTVVQQDLVVEGKTYKVTCVSMGNPHAVIYSCDGE 203 Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D +LA+ G ++ +F N V S + + WERG G T ACG+ A Sbjct: 204 PIKIDDLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGA 263 Query: 230 CASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CA VVA + +R V + GG L IEW +NH++MTG A+ + G+L Sbjct: 264 CALVVAGILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316 >gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] Length = 276 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G + L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQLVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] Length = 282 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 16/287 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D + + A + D ++LI A D Sbjct: 2 TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGS 115 +RI N DGSE + CGN RC+ ++L + +T+ GI L + + S Sbjct: 60 FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNS 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + M + ++ VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPADEPADYD-GKGAKPMKEQPIEVDGERYV----GTTVSMGNPHLVIFV-NDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G L HP+F +N+ A++ + +R WERG G+T ACG+ ACA+ VA Sbjct: 174 EAIDLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 234 AFLTGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] Length = 276 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] Length = 394 Score = 325 bits (834), Expect = 4e-87, Method: Composition-based stats. Identities = 94/314 (29%), Positives = 143/314 (45%), Gaps = 31/314 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD--------------------NITSDAINALSTDD-N 43 M+ + K +G+GN L++D RG D +T + I L Sbjct: 1 MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60 Query: 44 THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFE 100 D +++ ++ + +RI N DGSE + CGNG+RC+ RFL + + + E Sbjct: 61 IGADGLIVAAPPREGG-ELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVE 119 Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 T+ G +V + DGS+ VDMG+P L + +P + + F Sbjct: 120 TLAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESF--QVGAA 177 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 MGNPH + V DL DL FG L HP F N+ +V + L +R WERG G Sbjct: 178 GMGNPHVVIPVP-DLEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAG 236 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++V L R+ + + GG L I W ++HV+MTG A+ ++ + Sbjct: 237 PTLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAVI 296 Query: 280 DIKTGKWIKKNEDD 293 W + DD Sbjct: 297 AP--SLWDPEGVDD 308 >gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] Length = 278 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 139/278 (50%), Gaps = 8/278 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G+GN +V+D R ++ A+ +DQ + I ++ A Sbjct: 2 SGLAFTKMHGLGNDFVVVDGRVHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT-A 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ I N DG+E Q+CGNG RCV L + ETI G L+ + DG ++VDMG Sbjct: 61 YMAIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LDW+ IPLA D D + V+MGNPHA+FFV D DL++ Sbjct: 121 ANLDWRAIPLAS-----DTDTLSVTVPEAGTFGPATAVNMGNPHAVFFVP-DAEAVDLST 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +F E N+ V + + L +R WER G+T ACGS ACA++VA+ T Sbjct: 175 VGPRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVRRGLT 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R +V + GG L I W + HV MTG + G LD Sbjct: 235 ERRATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272 >gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22] gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22] Length = 271 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 29/285 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D R + AI D ++LI A D Sbjct: 2 TVRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P ++ + VSMGNPH + F+ DD+ Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + R V M GG + IEW + H+ MTG A K ++G++ Sbjct: 221 AFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium] Length = 305 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 25/303 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L+ DQI+ + VD Sbjct: 1 MRIRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLADRHFGVGADQILSVRAAPGPGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC VR++ R ++ + G++ E DG ++VDM Sbjct: 61 EYVIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVDM 120 Query: 121 GEPILDWKLIPLARS----------------FDKMDRDRFHIGPVNHLF---LRNPFVVS 161 G P+ + IP + + +D R V + N V+S Sbjct: 121 GAPVFELPRIPFDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVNVAVLS 180 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ V D+ +A G L+ HP F + VN ++ ++ LR +ERGVG Sbjct: 181 MGNPHAVQLVA-DVEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYERGVGE 239 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279 T ACG+ ACA+VVA L + V V GG L IEW + VFMTG A +EG+ Sbjct: 240 TLACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTVFEGET 299 Query: 280 DIK 282 +I Sbjct: 300 EIP 302 >gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] Length = 276 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +VID+ H +I FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ + IP +D G L +SMGNPHA+ VE+ + + Sbjct: 121 GPPRLEPREIPFQAENAALDYQVEVDGCEVEL-----AALSMGNPHAVLRVEN-VESAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V MTG A + +EG++ + Sbjct: 235 WMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276 >gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1] gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1] Length = 281 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 147/282 (52%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFIAEQP----EALYTLELANDRNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays] gi|194704094|gb|ACF86131.1| unknown [Zea mays] gi|223948299|gb|ACN28233.1| unknown [Zea mays] Length = 353 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 131/285 (45%), Gaps = 13/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 69 LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 127 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF+ FT T G +V + DG + VDM Sbjct: 128 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 187 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 GEPIL IP K ++ + VSMGNPH + F ++ + Sbjct: 188 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVLQV 246 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G H MF N +V S L +R WERG G T ACG+ ACA VVA Sbjct: 247 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 306 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 307 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351 >gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 287 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 138/284 (48%), Gaps = 10/284 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + ++ F KM G+GN +V+D+ H +I FDQ++++ + V Sbjct: 10 KPMLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEV 69 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SV Sbjct: 70 DFRYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSV 129 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P IP ++ G L + VSMGNPHA+ V DD+ Sbjct: 130 DMGPPRFIPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVQTA 183 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 184 PVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAIS 243 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 244 QGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287 >gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] Length = 283 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 141/289 (48%), Gaps = 22/289 (7%) Query: 3 SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 + ++ F KM G GN + +D G + ++ + + D ++LI + Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE---WSALHTGIGSDGLVLIG--RSG 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 D +RI N DGSE + CGN RC+ ++L + T +T+ GI L ++N+ Sbjct: 57 KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNK 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +++VDMG P + + M I V + VSMGNPH + FV Sbjct: 117 VDTVTVDMGIPACEPTCYD-GKEGKPMKEHPIEIDGVRY----TGTTVSMGNPHLVIFV- 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 +D+ DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA+ Sbjct: 171 NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACAT 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 VA+ ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 231 AVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct] Length = 277 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193] gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193] Length = 292 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 95/275 (34%), Positives = 130/275 (47%), Gaps = 16/275 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R IT ++ FDQ+ LI DA + Sbjct: 26 PFMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALIE---QGKGDAHLT 82 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RC+ R L + T RG L A + +G SV+MG P L Sbjct: 83 FFNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQL 142 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPL D ++ P MGNPH FFVE D L FG Sbjct: 143 DWRDIPLREETDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAGLIPLTDFGP 191 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 192 RYEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRR 251 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + + GG L I+W D+ V+MTG + G Sbjct: 252 VQIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTFT 285 >gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] Length = 280 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 15/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G+GN ++ID R + + + +DQ+++I + A D + Sbjct: 11 VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIGDRHFGVGYDQLVVITKSKKA--DVEV 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV + + + T +T G+LVA++ ++ ISV+MG P Sbjct: 69 VFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMGHPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +IPL +K+D I +P V +GNPH + FV DD+ DL S+G Sbjct: 129 LDWDVIPLK---EKVDLIELPIEG-------SPGAVGIGNPHCV-FVVDDVNSVDLISWG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + + H +F + N+ ++ +++ RT+ERG G T ACGS ACA V + T R Sbjct: 178 SKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGLTER 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VSV + GG L I W + ++MTG ++G L Sbjct: 238 NVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVLSPD 274 >gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] Length = 283 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 140/289 (48%), Gaps = 22/289 (7%) Query: 3 SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 + ++ F KM G GN + +D G + ++ + + D ++LI + Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE---WSALHTGIGSDGLVLIG--RSG 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112 D +RI N DGSE + CGN RC+ ++L + T +T+ GI L + N+ Sbjct: 57 KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNK 116 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +++VDMG P + + M I V + VSMGNPH + FV Sbjct: 117 VDTVTVDMGIPACEPACYD-GKEGKPMKEHPIEIDGVRY----TGTTVSMGNPHLVIFV- 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 +D+ DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA+ Sbjct: 171 NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACAT 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 VA+ ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 231 AVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana) tropicalis] Length = 289 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----DASVDAFIR 65 M+G GN +V+D +++ L+ DQI+ + A +D Sbjct: 1 MQGAGNDFIVLDETQGRLGLSAAQYRFLADRHLGVGADQILSVRAPTPQAVAAGIDFEYV 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV+ CGNG RC RF+ + + S +T G++ + DG +SVDMG P Sbjct: 61 IHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDMGLP 120 Query: 124 ILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + +P S + ++ + + + + SMGNPHA+ V DD+ Sbjct: 121 RFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIAIASMGNPHAVLLV-DDVDT 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A++G L+ H F VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 APVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACAAVVSGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V GG L I W + VF+TG A +EG++++ Sbjct: 240 RLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286 >gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2] gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1] gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] Length = 276 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ + FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + + G L VSMGNPH + VE+ + + Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] Length = 282 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 18/288 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +++ +N + D ++L+ + A D Sbjct: 1 MKFYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115 +RI N DGSE + CGNG+RC + + + ET+ GI+V + ++++ Sbjct: 59 LKMRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSL 118 Query: 116 ISVDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I V+MG P L + IP+ D + R I L N VSMGNPH + F++ Sbjct: 119 IRVNMGTPNLKPESIPILGFEGKDSVINQRIQINDKTFL---NVTCVSMGNPHCVIFMDY 175 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ ++ + + F + N+ ARV S ++LR WERGVG T ACG+ ACA+ Sbjct: 176 DIKNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATA 235 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA+ TN V++ + GG L IE+ + N+VFMT A +EG ++I Sbjct: 236 VAAKLNGFTNGNVNIHLPGGILHIEY-ETNNVFMTATATLVFEGIIEI 282 >gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] Length = 366 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 17/300 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT---SDAI---NALSTDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + D D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI+N DGSE + CGNG+RC+ R+L + + ET+ G++ + D Sbjct: 60 EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L + IP + + + V MGNPH + V DDL Sbjct: 120 LRVDMGPPFLTPEAIPTTVMPEDGLPQGVLLLEDEQI---RVASVGMGNPHVVVPV-DDL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L HP F N+ +V S E L++R WERG G T ACG+ ACA++VA Sbjct: 176 ASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL--DIKTGKWIKKNED 292 + L + V + GG L+IEW D + V MTG A+ ++G + ++ +G + + +D Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDGVMTPELMSGLFAVEPQD 295 >gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] Length = 269 Score = 324 bits (832), Expect = 7e-87, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ +R AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 +RI N DGSE CGN RC+ ++L + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG IPL D + F VSMGNPH + FV DD+ Sbjct: 120 VTVDMG--------IPLETGTIDFDGE----------FPFLSTQVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268 >gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] Length = 276 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN ++ID SD I +LS FDQ++++ D ++D Sbjct: 1 MRFSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG+RCV RF+ ++ T ++ ISV+MGE Sbjct: 61 RIYNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSEFISVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP F + ++ V + F VVS+GNPH + VE + + Sbjct: 121 PIFDPIKIP----FFSTQYQKMYVLFVPN-FTILCGVVSIGNPHCVILVEQ-VDLVPVTV 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L H F + N+S ++ S ++ LR +ERG G T ACGSAACA+V Sbjct: 175 LGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQQGLL 234 Query: 243 NR--AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + +V V + GG L I W ++M G A ++G +++ Sbjct: 235 KKNISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276 >gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] Length = 278 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG D + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R +K F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P + IP+ + + N + MG PH I FV DDL Sbjct: 119 VNMGKPSFKREDIPMQGDPKSDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDLEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R SV + G L IEW D+ VFMTG A++ + G+ Sbjct: 235 LNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGEY 276 >gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] Length = 276 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +VID+ H +I FDQ++++ Q+ VD Sbjct: 1 MLLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I VDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + + G L SMGNPHA+ V D + + Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAASMGNPHAVLRV-DSVERAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205] Length = 341 Score = 324 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 134/285 (47%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M F+K +G+GN L++D R D +T + + L D ++L + Sbjct: 1 MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPP-NG 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DG+E + CGNG+RC+ RFL +++ +T+ G +V + DG+ Sbjct: 60 GGELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L IP + + F MGNPH + V D + Sbjct: 120 IRVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERFA--VAAAGMGNPHVVVPV-DSV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL FG+ L HP F N+ V S L +R WERG G T ACG+ ACA++VA Sbjct: 177 DEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 L + R + + GG L I W N VFM G A+ ++G + Sbjct: 237 CHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281 >gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] Length = 289 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 122/277 (44%), Positives = 171/277 (61%), Gaps = 4/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAAR--VPYDQLMVLQPPRLDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DGSE +CGNGMRCVVR + + + S TFET G+L + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VV+MGNPHA+F+V+ D+ YDL FG L Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + GG L IEW + ++HV MTG A E+EG+ + + Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283 >gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] Length = 293 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 127/276 (46%), Positives = 170/276 (61%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--LPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + ++ TFET G+L DG +VDMGEP Sbjct: 67 NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F IGP++ L P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWV-DDIEAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + +R V Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L I W + +NHV MTG A E+EG+ D Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFDP 281 >gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] Length = 283 Score = 324 bits (831), Expect = 9e-87, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 12/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM GIGN + ++ + I L +D + LI DA +R Sbjct: 1 MRFTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDRHFGIGGDGLILITPSEVADARMR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVD 119 + N DGSE + CGNG+RCV +++ K+++ ET G+L + + + V+ Sbjct: 61 MFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVRVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+PIL+ K IP + + + I + + VSMGNPH + FVE Sbjct: 121 MGQPILEGKKIPTIFDSNPVVNQKIEIAGQSF----DVTCVSMGNPHCVIFVEKATDEL- 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + F VN+ V S + RTWERG G T ACG+ A A VA Sbjct: 176 VLKIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGVLT 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R + +LGG L +EW++ +N V+ TG A + + G+ + Sbjct: 236 GRTKRKILNHLLGGDLQLEWNEADNCVYKTGGATEVFTGEWMLPA 280 >gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] Length = 276 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K+ ET G++ + DG + V+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ +P + + V + +SMGNPHA+ V D++ + Sbjct: 121 GAPRLEPAQVPFQAEQAAL----TYRVDVEGQSVELA-ALSMGNPHAVLRV-DNVDSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 235 WMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715] gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] Length = 281 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP K + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVAEEPKA----LYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] Length = 276 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN +VID ++T+ + ++ DQ++L+ ++D Sbjct: 1 MRIAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + + +T GI+ + DG I+VDM Sbjct: 61 GYRIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP K+D++ + VSMGNPH + V + + Sbjct: 121 GVPRFAPHQIPF-----KVDQEADYYSLELDGQQVEIGAVSMGNPHCVLRVP-AVDTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+ V Sbjct: 175 AHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W + V+M+G A+ ++G +++ Sbjct: 235 WLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276 >gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2] gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2] Length = 279 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 135/272 (49%), Gaps = 15/272 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID RG T AL FDQ+ I D A D + Sbjct: 10 LAFMKMHGLGNDFVVIDSRGRGAVTTPALARALGDRHRGVGFDQLAEIRDS--AEADFAL 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV F+ + + T T RG L A DG +SV+MG P Sbjct: 68 DFWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQ 127 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D + +P V MGNPH +FFV + ++A G Sbjct: 128 LDWAEVPLARPADTLHL----------PISGDPVAVGMGNPHCVFFV-GNAETVNVADLG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L P+F + N+ A +T + L +R WERG G+T ACGS ACA+ VA+ T R Sbjct: 177 ALFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGR 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V++ + GG L I+W + V+MTG ++ Sbjct: 237 KVTLDLDGGALEIDWRSDG-VWMTGPTAHVFD 267 >gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] Length = 281 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D+ + I L+ FDQ++++ + D Sbjct: 1 MLEFTKMHGLGNDFMVVDLITQRAYFDTLTIQRLADRHFGIGFDQLLIVEPPDLPTADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ K +G + V+MG Sbjct: 61 YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +LIP + D + +N+ L VV+MGNPHA+ V D+ ++A Sbjct: 121 YPKFAPELIPFVTE----ETDPLYALELNNNQLLKIDVVNMGNPHAVTIVP-DVLTAEVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G + H F E VN+ ++ + + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 176 SIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMRRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 236 LAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276 >gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 275 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + ++ D I+ L+ FDQ+++I D +D Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ +++ T +G + K DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PIL+ +P F+ ++ +I V + VVS+GNPH + V DD+ + + + Sbjct: 123 PILEPAKVP----FEAQKEEKTYILRVEDHTVLCG-VVSIGNPHCVVLV-DDIDNAPVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F VN+ + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 177 LGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 N ++++ GG L + W V MTG A ++G++ I Sbjct: 237 NPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275 >gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399] gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399] Length = 287 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 Q ++F K +G GN +V+D + + A+ D +M++ + A Sbjct: 5 QGKTMEFTKWQGCGNDFVVVDFLDREPVDFAALAVRMCDRHFGIGADGLMVVLPSETA-- 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDG 114 D +R N DG+E + CGNG+RC R+L R++++ FT ET+ GI+ + + + Sbjct: 63 DIRMREFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDGKVT 122 Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++ VDMG P+L IP+ +++ + + VSMGNPHA+ FV D Sbjct: 123 AVEVDMGVPVLTGDDIPVRGFGTERVIAVPITVAGEEYK----MTCVSMGNPHAVIFV-D 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D H+ LA G H +F +N V +R WERG G+T ACG+ CA++ Sbjct: 178 DAEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATL 237 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 238 TAGVLTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGV 282 >gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056] gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058] gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059] gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] Length = 281 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVAEEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] Length = 281 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVAEEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] Length = 280 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 18/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + S +S D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SIS 117 + N DGS+ CGNG+RCV ++ + + + + T GI L DG + Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVALVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL + IP+ + +++ + ++ + + VSMGNPHAI ++ DDL + Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTY----HITAVSMGNPHAIVYM-DDLRN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N +V +L +R WERG G T ACG+ ACA VAS Sbjct: 174 LDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233 Query: 238 CLHKTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + V+VK+LGG L I W N V+MTG A ++G++ + Sbjct: 234 LNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIFL 280 >gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] Length = 323 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 100/283 (35%), Positives = 138/283 (48%), Gaps = 12/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++FAK EG+GN ++ID R +T + L + D ++ D Sbjct: 39 IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLCNRNFGVGGDGVIFALKAPQD-YDFT 97 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE + CGNG+RC +FL KS+ T+ G +V + N D +I+VDMGE Sbjct: 98 MRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNPD-TITVDMGE 156 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHYDLA 181 PILD +P + + V+ VSMGNPHAI FV+D D A Sbjct: 157 PILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKISAVSMGNPHAIIFVDDLEKDIDFA 216 Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L F N+ +V S L ++ WERG G T ACG+ CA VVA+ + Sbjct: 217 VDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVVAAIRAN 276 Query: 241 KTNRA----VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 K R V V + GG L IEW +NN ++MTG A ++G Sbjct: 277 KIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGT 319 >gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] Length = 274 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 135/281 (48%), Gaps = 13/281 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M F KM G+GN +V+D R ++T I AL DQ + + D Sbjct: 1 MMTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALCDRHTGIGCDQFVTLRPACAEGADV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+R N DGSE +CGN RCV + R +T G+L A R G ++VDMG Sbjct: 61 FVRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W +PLA + D + +P VSMGNPHA FF+ D Sbjct: 121 PAQGWADVPLAEAMDTLHL----------PMAGDPAAVSMGNPHATFFLPAP-DGMDPCV 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F + N+ A VTS S+ LR WERG GLT ACGS ACA+VV + Sbjct: 170 AGPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGLV 229 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 +R +V+M GG L I W D+ HV MTG A + G + Sbjct: 230 DRTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTFSPE 270 >gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] Length = 280 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 16/280 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +++D R IT + FDQ+ +I DA Sbjct: 10 TGLPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIE---QGQADA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ RFL + + + T RG L+A++ DG S++MG+ Sbjct: 67 HLVFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQ 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ IPLA + ++ P MGNPH FFV D L Sbjct: 127 PQLDWQEIPLAEDVNTLEL----------PIEGGPTATGMGNPHCTFFVV-DAEAIPLEE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 176 FGARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 R V + + GG + I+W D+ V+MTG G L + Sbjct: 236 GREVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTLTPE 274 >gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 280 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 156/287 (54%), Gaps = 18/287 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++ KM G+GN +V+ ++ AI + D ++ I ++A D Sbjct: 1 MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLCNRHFGIGADGLVYILPSKEA--DFM 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETI-RGI----LVAKENRDG 114 +RIIN DGSE + CGN +RCV +++ + T +TI GI + K+ + Sbjct: 59 MRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDGKVD 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++ VDMGEPIL+ IP + + + + + F VSMGNPH + +V+D Sbjct: 119 TVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVSMGNPHCVIYVDDA 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +L +G LL HP+F + +N+ A V S + + + WERG G T ACG+ ACA++V Sbjct: 175 V-TMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACATLV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 AS + T+R ++ + GG L IEW++ +NHV+MTG A + ++G+L Sbjct: 234 ASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRLS 280 >gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] Length = 281 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D R +IT ++ FDQ+ +I DA Sbjct: 10 TRLPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R L + T RG+L+A++ +G SV+MG+ Sbjct: 67 HLTFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQ 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ IPLA D ++ P MGNPH FFV + LA Sbjct: 127 PQLDWQDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFV-GNAEVIPLAE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V + + GG L I+W ++ V+MTG +G Sbjct: 236 GRKVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGYFT 272 >gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] Length = 283 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 135/285 (47%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KMEGIGN + D + + I +S D +++I D Sbjct: 7 MQLHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSD--QYDF 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE CGNG+RC +F+ + ET G+ + DG Sbjct: 65 KMRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGA 124 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P+L + IP + +KM + IG + +SMGNPH + FV DL Sbjct: 125 KVNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVS-DLD 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 180 TLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYAC 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ + + M+G A + G ++I Sbjct: 240 YLNHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIEI 283 >gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54] Length = 297 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 131/287 (45%), Gaps = 14/287 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D +T + AL DQI+L+ D R Sbjct: 4 NFTKMHGAGNDFVVLDGVRQAIEMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDMG Sbjct: 64 IFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDMGST 123 Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 D +P D + + + P V++ NPHA+ V D++ Sbjct: 124 RFDPAALPFDTAGLASRTEGQDTLWQLELDV-PAGLPRSVALSAVAISNPHAVQVV-DNV 181 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +A G L+ HP F+ VN ++ S+ LR ERG G T ACG+ ACA+V A Sbjct: 182 DTAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACGTGACAAVAA 241 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W+ + +TG A+ + G++DI Sbjct: 242 GIRRGLLDSPVRVQTRGGVLTIAWN-GEQLRLTGPAESVFTGQVDID 287 >gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] Length = 270 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 29/290 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D AI D ++LI + A D Sbjct: 2 TKKIKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ + T +T+ GI + K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVTA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P ++ H + VSMGNPH + FV DD+ Sbjct: 120 VTVDMGSP---------------LETGEVHF---EDKYPFRSTRVSMGNPHLVTFV-DDI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L H +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TQINLPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 + T R + M GG + IEW + + H+ MTG A K ++G+++ G Sbjct: 221 AFINELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIEEIEG 270 >gi|194700330|gb|ACF84249.1| unknown [Zea mays] Length = 308 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 131/285 (45%), Gaps = 13/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 24 LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF+ FT T G +V + DG + VDM Sbjct: 83 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 142 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 GEPIL IP K ++ + VSMGNPH + F ++ + Sbjct: 143 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVLQV 201 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G H MF N +V S L +R WERG G T ACG+ ACA VVA Sbjct: 202 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 261 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 262 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306 >gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900] Length = 281 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] Length = 388 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 143/287 (49%), Gaps = 14/287 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQ 56 +++ F+K +G+GN L++D R D + + + + D ++L + Sbjct: 6 GAVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALPPE 65 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRD 113 + +RI N DGSE + CGNG+RC+ RFL +++ ET+ G +V + D Sbjct: 66 GDG-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLAD 124 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G + VDMGEP L + +P + + + F MGNPH + + Sbjct: 125 GMVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAAAA--GMGNPHLVIP-VE 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ DL FG LL +HP F N+ + + L +R WERG G T ACG+ ACA++ Sbjct: 182 EVEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATL 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VA L + R+ + + GG L I+W +NH+FMTG A+ ++G L Sbjct: 242 VACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288 >gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] Length = 290 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 141/295 (47%), Gaps = 17/295 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +++ D N A+ + + D + L+ + A+ + Sbjct: 1 MRFTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAA--FRV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE + CGN +RC ++L E I L + S+ V Sbjct: 59 RIFNPDGSEAELCGNLLRCAGKYLYEKGHTGETVIPVEMYDKIKVLRLAVTDGVVQSVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ L+P+A + + + VSMGNPH + FV D+ Sbjct: 119 DMGEPILESDLVPVAGKRRQAVNEEVTASGEKFV----MTAVSMGNPHCVIFV-DETAAV 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L ++G L HP F + N+ V S + R WERG G T ACGS ACA +VA Sbjct: 174 PLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAGVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL---DIKTGKWIKKN 290 K NR ++ + GG L IEW D+NHV+MTG A + + G+L + K+++K Sbjct: 234 SDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGELVTDEQFKNKYLRKG 288 >gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] Length = 267 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ +K T +T GI V K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P L+ + + F VSMGNPH + FVE D+ Sbjct: 120 VTVDMGSP-LETEAVDFG-----------------DQFPFQSTRVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 221 AVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] Length = 293 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 129/276 (46%), Positives = 171/276 (61%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW D +NHV MTG A+ E+EG+ D Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFDP 281 >gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E] gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E] Length = 274 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 135/281 (48%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L +K T G ++ DG I V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ + IP A F+K R I V VSMGNPH V DD+ ++ Sbjct: 121 PVWEPAKIPFIANKFEKNYILRTDIQTV------LCGAVSMGNPHC-TLVVDDVETANVT 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F E VN+ +V + + LR +ERG G T ACGS ACA+ Sbjct: 174 ELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L IEW H ++MTG+A ++G + + Sbjct: 234 LENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274 >gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425] gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425] Length = 280 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + A++ D ++ + D Sbjct: 3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPAT-GETDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ RF + T+ G + + DG ++V Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTV 121 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG+P L IP L + +K+ +G + VSMGNPH I FVE+ + Sbjct: 122 DMGQPRLLAGEIPTTLKPAAEKVIAQPLQVGGRSWSVT----CVSMGNPHCITFVEN-VA 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G HP F + +N V + L +R WERG G+T ACG+ ACA++VA+ Sbjct: 177 AIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVAA 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 + +V++ GG L IEW V MTG A++ ++G L Sbjct: 237 VLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280 >gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20] gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20] Length = 282 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 16/287 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D + + A + D ++LI A D Sbjct: 2 TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGS 115 +RI N DGSE + CGN RC+ ++L + T +T+ GI L + + S Sbjct: 60 FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNS 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + M + ++ VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPADEPADYD-GKGAKPMKEQPIEVDGERYV----GTTVSMGNPHLVIFV-NDI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G L HP+F +N+ A++ + +R WERG G+T ACG+ ACA+ VA Sbjct: 174 EAIGLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 234 AFLTGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7] gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7] Length = 277 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 15/285 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KMEGIGN + D + + I +S D +++I D Sbjct: 1 MQLHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSD--QYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE CGNG+RC +F+ + ET G+ + DG Sbjct: 59 KMRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGA 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P+L + IP + +KM + IG + +SMGNPH + FV DL Sbjct: 119 KVNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVS-DLD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 174 TLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYAC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ + + M+G A + G + I Sbjct: 234 YLNHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIKI 277 >gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 304 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ N + +S D ++LI + A D + Sbjct: 28 MKFTKMQGCGNDYVYVNCFEETINDPNGVAKKVSDRRFGIGSDGLILIKPSEIA--DFTM 85 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS+ + CGNG+RCV +++ ++ S ET+ G+ L+ + ++V Sbjct: 86 HMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALIVDGGKVTEVTV 145 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP LD KLIP+A +++ I VS+GNPHA+ F+ED + Sbjct: 146 DMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG----VSVGNPHAVTFIEDT-NSF 200 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + ++G L +HP+F E +N ++ +++++R WERG T ACG+ A SV A+ Sbjct: 201 PIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGSAETHACGTGATCSVYAAIL 260 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 T V+V MLGG ++I + + N +FMTG A ++G++++ Sbjct: 261 NGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGEIEL 304 >gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7] Length = 276 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I + FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQATCYTVDVDGQSIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] Length = 273 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 104/283 (36%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQD 57 M+ +M V F KM G+GN +V+D R + A + DQ++L+ Sbjct: 1 MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLEPS-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 S D +RI N DGSEV +CGN R V + ET G+L A DG Sbjct: 59 GSADFRMRIFNHDGSEVGACGNATRAVA-----LLHGVEARIETAGGLLSAS-PSDGGAR 112 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P DW IPLA D + PV L NP V++GNPH IFFVED Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTLSM------PVGWEMLENPGAVNVGNPHVIFFVEDT-NA 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + K P+F E VN+++A + S + LR WERG GLT ACG+ ACA+ V + Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V+V + GG L I W + MTG A + + G + Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268 >gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] Length = 261 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + + I L+ FDQ++++ D +D RI N DGSEV C Sbjct: 1 MVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVAQC 60 Query: 78 GNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF L ++ + T G ++ N D ++ V+MGEP D + +P Sbjct: 61 GNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVNEDETVCVNMGEPNFDPQAVP---- 116 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F ++ +I + VVSMGNPH + V DD+ ++A G +L H F E Sbjct: 117 FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVALLGPVLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 N+ +V S E + LR +ERG G T ACGS ACA+V V V++ GG L Sbjct: 175 RANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELLGEEVHVELPGGSL 234 Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281 I W H ++MTG A ++G + + Sbjct: 235 HISWKGPGHPLYMTGPATHVYDGFIHL 261 >gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 269 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 26/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + I+ + A+ D ++LI D + Sbjct: 1 MKFTKMQGTGNDYVYINCFEETVERPEELAVKVSDRHFGIGSDGLILICPS--GQADCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 ++ N DGSE + CGNG+RCV +F+ +++K F ET GI K +G I+V Sbjct: 59 KMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGGKAALITV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + +P + + ++ F+ +SMGNPHAI+++ D++ Sbjct: 119 DMGIPEVTG-DVP----------EPIVVDGRSYEFIG----ISMGNPHAIYYM-DEIDDL 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G H F E N +V L +R WERG G T ACG+ A AS VAS Sbjct: 163 DLEAIGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASVL 222 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283 +T V V++ GG L I W ++ HV+MTG A + ++G+ + Sbjct: 223 SGRTENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEFQPEN 268 >gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 276 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SV+M Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP G L + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADAQAPSYPLVVDGQ-----LYSIAAVSMGNPHAVLRV-DDVSTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 282 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 133/280 (47%), Gaps = 7/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +VID + S I A + FDQ++L+ D Sbjct: 3 TLKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWADRHTGIGFDQLLLVERPTSEQADFR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++V+MG Sbjct: 63 YRIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMG 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P IP + + V+MGNPHA+ VE+ +A Sbjct: 123 QPRFRPSEIPF-LPLENTSGETLQYDVRLDGGNVTVGCVNMGNPHAVLTVENT-ESAAVA 180 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA+ V Sbjct: 181 ELGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACAAAVYGVRAGW 240 Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V + GG LLI W VFMTG A+ +EG+L Sbjct: 241 LDEGEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280 >gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] Length = 286 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G GN +VI+ + +TS I L+ FDQ+++I A + Sbjct: 7 IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC +L + T ET G++V +DG ISVDMG Sbjct: 67 RIFNADGSEVSQCGNGARCFFHYLRMKKLSSSNEITVETQSGMIVLSYKKDGLISVDMGV 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ D+K IP + + + ++ F + +SMGNPHA+ + L DL Sbjct: 127 PVYDYKQIPFISTNTTLP--TVTVDDKSYEF----YPISMGNPHAVIKLAS-LQGVDLVK 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L K F + VN+ +V +L L+ +ERG G+T ACGS ACA+ V + Sbjct: 180 IGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVVAIQKRWA 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VSV + GG L I V + G A+ ++G+L+ Sbjct: 240 QNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277 >gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 276 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP ++ G L + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVQTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] Length = 274 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + A+ D ++++ A D +R Sbjct: 1 MRFTKMHGLGNDFIVIEAVEG-VDYSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ + + ++ T ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + V +G PH I FV + Sbjct: 118 MGSPIFESSKIPVKSEKQKFIDEPVKIDGKTYRL----SSVRVGVPHTILFVSSFEESF- 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F EG N+ +V E++ +RTWERGVGLT ACGS A AS V S L Sbjct: 173 MKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSLL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T R+V+V G LL+EW ++N ++++GE ++ + G+++I Sbjct: 233 GRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274 >gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] Length = 297 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 133/286 (46%), Gaps = 12/286 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D +T + AL DQI+++ A D R Sbjct: 4 NFTKMHGAGNDFVVLDGVRQTIEMTPERARALGDRHFGIGADQILVVERPTVADADFRYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R + GILV E D ++VDMG Sbjct: 64 IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDMGST 123 Query: 124 ILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + +P R + + P V++ NPHA+ V D++ Sbjct: 124 RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQVV-DNVD 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F+ VN +V ++ LR +ERG G T ACG+ ACA+V A Sbjct: 183 TAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGACAAVAAG 242 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V+ GG L + W+ + + MTG A+ + G++DI Sbjct: 243 IRRGLLESPVRVQTRGGVLTVAWNGDQ-LRMTGPAESVFTGQVDID 287 >gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1] gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1] Length = 276 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + G L + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276 >gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] Length = 301 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 120/276 (43%), Positives = 170/276 (61%), Gaps = 3/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R ++T++ A+++ +DQ+M++ + +A +RI Sbjct: 20 FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L N G +VDMG P Sbjct: 80 NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 198 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERGVGLT ACGSAAC + VA+ L + R V Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFDP 294 >gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1] Length = 292 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 19/297 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + LS D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYIYVNCFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 RI N DGSE CGN RC+ +++ + ++ T ET GI L A +++V Sbjct: 59 RIFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +L K IP+ D+ + VSMGNPHA+ FV D Sbjct: 119 DMGKAVLVPKDIPVNSDLDRFISQPVEADGR----TWSVTCVSMGNPHAVIFV-GDTDSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H +F + +N +V +L +R WERG G T ACG+ ACAS VA+ Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 + + + + GG L I + + V M G A+ +G++ ++I+K +++ Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEVK---DEYIEKAKEN 287 >gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040] gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040] Length = 275 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 100/278 (35%), Positives = 133/278 (47%), Gaps = 14/278 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDA 62 M+ F KM G+GN +VID R IT ++ FDQ+ +I DA Sbjct: 1 MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIATADASTEADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + + S T RG+L+A + +G SV+MG Sbjct: 61 HLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPLA + P MGNPH FFVE D LA Sbjct: 121 PQLSWDEIPLAEEL----------ETLELPIEGAPSATGMGNPHCTFFVE-DAEVIPLAE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ IA V L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGLT 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V + + GG L I+W D+ V+MTG G Sbjct: 230 GRKVQIDLDGGTLWIDWRDDG-VWMTGPTMHVANGSFT 266 >gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] Length = 302 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 147/305 (48%), Gaps = 41/305 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-------------------------DNITSDAINA 37 ++ + F KM G+GN +V+D R +T A Sbjct: 6 TNGLPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQA 65 Query: 38 LSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96 + FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 66 IGHRQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQ 122 Query: 97 FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 T RG L A++ +G SV+MG P L W IPLAR D ++ P++ Sbjct: 123 LHLTTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL------PIDGA---- 172 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 P MGNPH FFV DD+ DLA FG + H ++ E N+ IA++ + + +R WE Sbjct: 173 PTATGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWE 231 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RGVG+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + Sbjct: 232 RGVGITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFS 290 Query: 277 GKLDI 281 G L Sbjct: 291 GVLTP 295 >gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1] Length = 276 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + G L + VSMGNPHA+ V DD++ + Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVHTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] Length = 293 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 128/276 (46%), Positives = 172/276 (62%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLSGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + S ++ TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAAC++ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + +NHV MTG A E+EG+ D Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFDP 281 >gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 281 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] Length = 276 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H ++ FDQ++++ VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ + DG + V+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + +P ++ G L +SMGNPHA+ V D+ + Sbjct: 121 GAPRLQPEQVPFQAEQAALNYRVDVDGQSVEL-----AALSMGNPHAVLRV-DNTDDAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 235 WMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] Length = 288 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 104/283 (36%), Positives = 142/283 (50%), Gaps = 15/283 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 S + F KM G+GN +++D RG H +T I AL+ DQ++ + Sbjct: 17 HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D F+R N DGSE +CGN RCV + ++ +T G L A+ +G I+VDM Sbjct: 77 DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L+W+ +PL D + +P SMGNPHA FFVED + Sbjct: 137 GEPRLNWQDVPLVAEMDTLHL----------PLEGDPAAASMGNPHATFFVED----FAR 182 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + Sbjct: 183 LSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARRG 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 R V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 243 LVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDLAA 285 >gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] Length = 277 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSN--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGNG+RC ++ + + +FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K IP+ + DK+ + V +G PH FV DD+ Sbjct: 119 DMGKPFFNSKDIPMNVTMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFV-DDITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 279 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +V+D + + A+ D +M++ + A D + Sbjct: 1 MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVVLPSETA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDGSISV 118 R N DG+E + CGNG+RC R+L R+K++ FT ET+ GI+ + + + ++ V Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L IP+ +++ + + VSMGNPHA+ FV DD H Sbjct: 119 DMGVPVLTGDDIPVRGFGTERVIAAPITVAGRTYK----MTCVSMGNPHAVIFV-DDAEH 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G H +F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGV 274 >gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] Length = 289 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 122/276 (44%), Positives = 172/276 (62%), Gaps = 4/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A+++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVASR--VPYDQMMVLQRPRFDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DGSE +CGNGMRCVV + + + S TFET G+L + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHA+F+V++D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A++ + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + ++HV MTG A E+EG+ + Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEP 282 >gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] Length = 302 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 148/305 (48%), Gaps = 41/305 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRG-------------------------CHDNITSDAINA 37 ++ + F KM G+GN +V+D R +T A Sbjct: 6 TNGLPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQA 65 Query: 38 LSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96 + FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 66 IGHRQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQ 122 Query: 97 FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 T RG L A++ +G SV+MG P L+W IPLAR D ++ P++ Sbjct: 123 LHLTTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL------PIDGA---- 172 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 P MGNPH FFV DD+ DLA FG + H ++ E N+ IA++ + + +R WE Sbjct: 173 PTATGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWE 231 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RGVG+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + Sbjct: 232 RGVGITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFS 290 Query: 277 GKLDI 281 G L Sbjct: 291 GVLTP 295 >gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 276 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRLVPEEIP----FQTAEQAKSYSLDVDGQSVELA-AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] Length = 281 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + I L+ + FDQ++++ S D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC +F+ R + +T GI+ + +G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPQEIPFVADAP----ESLYDIDLAGGEKLTIDVVNMGNPHAVTIVP-DVIAADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 176 ARIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V +++ GG L IEW + + V+MTG +EG+LD++ Sbjct: 236 LLSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277 >gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4] gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4] Length = 271 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 16/279 (5%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI A D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123 DGSE CGN RC+ +++ +++ T ET+ GI + K + + ++VDM P Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDMDLP 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +L + KM + + V MGNPH + F+ DD+ + +L + Sbjct: 119 LLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDIKNVNLPAI 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK Sbjct: 173 GPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAG 232 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 233 RKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] Length = 303 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 18/289 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+ID R N + + D ++L + A Sbjct: 4 MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115 D ++I N DGS + CGNG+RC+ RFL + + ET+ GI+ DG Sbjct: 63 DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQ 122 Query: 116 ISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I VDMG P LD + IP + + + H+G + + V MGNPH I VE Sbjct: 123 ICVDMGTPFLDPESIPTTLTIGSAGLPQGECHLGSTS----LHVAAVGMGNPHLIVPVE- 177 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + ++G L KH F N+ ++ S L++R WERG G T ACG+ ACAS+ Sbjct: 178 DLENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACASL 237 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VA+ L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 238 VATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVLTP 286 >gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] Length = 275 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 107/280 (38%), Positives = 151/280 (53%), Gaps = 16/280 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 + + F KM G+GN +VID R ++T+ AL+ DQ++++ A Sbjct: 5 RGMRIPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA-- 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +RI N DGSEV++CGN R V L F ET+ G++ ++ DG +SVDM Sbjct: 63 DVRMRIFNNDGSEVEACGNASRAVGLLL----GGTQF-IETLGGLIRSEARPDG-VSVDM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IP++ + D ++ PV L NP V++GNPH IFFV DD DL Sbjct: 117 GAPRLRWDEIPVSYAMDTLEM------PVGWEDLENPVGVNVGNPHVIFFV-DDADAVDL 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ P+F E +N+++A V + L LR WERG GLT ACG+ ACA+ VA+ Sbjct: 170 ARLGPLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRK 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R V + + GG L I W + + MTG A +EG + Sbjct: 230 LTGRKVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269 >gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] Length = 276 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 276 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + G L VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFAPEDIPFQAAQQATRYSVEVDGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group] Length = 354 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 129/284 (45%), Gaps = 13/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 70 LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYT 128 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF+ SF T G+++ + DG + VDM Sbjct: 129 MRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDM 188 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 G+PIL IP K + V+ VSMGNPH + F + + Sbjct: 189 GQPILSGPDIPTKLPSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHV 247 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G H MF N V S L +R WERG G T ACG+ ACA VVA Sbjct: 248 DDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVA 307 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 + + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 308 AVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 351 >gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] Length = 276 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D R ++ I ALS DQ + + + A D F Sbjct: 1 MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITLERPE-AGADVF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSE ++CGN RCV L + R T+RG L + G+I DMG P Sbjct: 60 MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W+ +PLA + D P++ + +P SMGNPHA FFVE L D + Sbjct: 120 SLAWQEVPLAEAMDTTHL------PIDLGAVADPAACSMGNPHATFFVE-TLEGLDWQAL 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+ + N+ A V S E + L WERG G T ACGS ACA++V + Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 R + + GG L +EW +NHV M G + G+ D T Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273 >gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] Length = 276 Score = 321 bits (823), Expect = 8e-86, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP ++ G L + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFTPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276 >gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11] gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11] Length = 281 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 138/278 (49%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D R +IT ++ FDQ+ +I DA Sbjct: 10 TRLPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDA 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L T RG+L+A++ +G SV+MG+ Sbjct: 67 HLTFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQ 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW+ IPLA D ++ P MGNPH FFVE+ LA Sbjct: 127 PQLDWQDIPLAEDVDTLEL----------PIEGTPTATGMGNPHCTFFVEN-AEVIPLAE 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + + GG L ++W D+ V+MTG +G Sbjct: 236 GHKVRIDLDGGTLWVDWRDDG-VWMTGPTMHVADGHFT 272 >gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] Length = 279 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 110/282 (39%), Positives = 148/282 (52%), Gaps = 6/282 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M F KM G GN +VID T D I AL+ FDQ++ I + A Sbjct: 1 MACMTRPFIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DAF+R+ N DGS V++CGN +RCV L T +T G A D ++VD Sbjct: 60 -DAFMRVWNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P LDW +PLA D + +GP++ L P VSMGNPH +FF + + Sbjct: 119 MGRPRLDWTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQDDGF- 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+L+ HP+F EGVN+ A V + + LR WERG GLT ACG+ ACA+ VA+ Sbjct: 177 VTGSGSLVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARR 236 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T+R +V + GG L+I+W +HV MTG + E G L Sbjct: 237 GLTDRKATVVVDGGELVIDWDPATDHVLMTGPVEIERTGALS 278 >gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605] gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605] Length = 368 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 15/288 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R N + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLIVEGRQGQLPDAISNPDPAWVRRICDRRFGVGGDGLILALPAQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 + +RI+N DGSE + CGNG+RC+ R+L + + ET+ G++ + DG Sbjct: 60 DGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L + IP + + L V MGNPH + V DDL Sbjct: 120 LRVDMGPPFLSSEGIPTTLMPEDGLPQGVLLLEGEQL---KVAAVGMGNPHVVVPV-DDL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L HP F N+ +V + E L++R WERG G T ACG+ ACA++VA Sbjct: 176 ASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L + V + GG L+IEW D V MTG A+ ++G L Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVLTPD 283 >gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] Length = 271 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 16/279 (5%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI A D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123 DGSE CGN RC+ +++ +++ T ET+ GI + K + + ++VDM P Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDMDLP 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +L + KM + + V MGNPH + F+ DD+ + +L + Sbjct: 119 LLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDIKNVNLPAI 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F + N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK Sbjct: 173 GPKLENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAG 232 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 233 RKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 130/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV L + + T ET G++ K + S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPL F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 128 GQPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293 >gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470] gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470] Length = 283 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 136/286 (47%), Gaps = 11/286 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 MQ + F K + GN + ++ + ++ + + D I+ + + A+ Sbjct: 4 MQEGFMHFTKWQACGNDFVFVNAMTMDIRPVVKKCVSICNRNFGIGADGIIFVLPSEKAT 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 + +RI N DGSE + CGNG+R ++ + + F+ ET GIL + DG + Sbjct: 64 L--QMRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPDGKVR 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ IP+ D M +R N L VSMGNPH + F DD+ Sbjct: 122 VDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFT-DDIDR 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G+ L F N+ A++ L +R WERG G+T ACG+ CA+VVA+ Sbjct: 178 ISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATVVAAI 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281 V + GG L I W ++ HVFMTG A+K +EG+ I Sbjct: 238 LNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283 >gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] Length = 288 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 124/275 (45%), Positives = 172/275 (62%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +++ A++++ +DQ+M++ + +AF+RI Sbjct: 9 FSKMNGIGNEIVVLDLRDHPVAVSAADARAIASE--VPYDQLMVLQPPRTPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGSE +CGNGMRCV R + + + TFET G+L +VDMG P L W Sbjct: 67 NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K IPLA F IGP++ L P VVSMGNPHAIF+V DD+ +DLA FG LL Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAHDLARFGPLL 185 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+++A++ + + +RTWERGVGLT ACGSAACA+ VA+ L + NR V Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW ++HV MTG A E+EG+ D Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFDP 280 >gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 276 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPFEAP-EQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] Length = 281 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 136/283 (48%), Gaps = 7/283 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D G ++ + I L DQI++I VD Sbjct: 1 MRLRFTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N G EV+ CGNG RC VR++ + + ET+ +L DG + VDM Sbjct: 61 RYRIFNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ D +P A + F + P+ + V+SMGNPHA+ V D Sbjct: 121 NRPVFDLARVPFDASGLTPRLVNGFELWPLADAGVE-VAVLSMGNPHAVMRVADVDAAPV 179 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 A+ G + H F VN +V S + LR +ER G T ACG+ ACA+VVA L Sbjct: 180 -AAVGPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 +R V V GG LLIEW D++ V MTG A +EG++++ Sbjct: 239 GWLDRRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281 >gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] Length = 276 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V+F KM+G GN +VID +T+ I ++ FDQ+++I ++ SVD Sbjct: 1 MKVNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC+ RF+ + R+ T+ +L K DG +SV M Sbjct: 61 HFRIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP S F+ V++ ++ VV++GNPHAI VE + ++ Sbjct: 121 GVPRFEPTEIPFIAS----GVANFYDIAVDNQIVKLG-VVNIGNPHAIIPVER-INAEEV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F EG N+ +V +++ LR +ERG G T ACGS ACA+V Sbjct: 175 GKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVGRRCG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 V V GG L I+W V MTG A + G+ Sbjct: 235 LLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGE 273 >gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] Length = 280 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 111/289 (38%), Positives = 151/289 (52%), Gaps = 13/289 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M F KM G+GN +VID R ++T + + AL+ DQ + I + Sbjct: 1 MSIRGTHFLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 V AF+ + N DG V+SCGN RCV R L + +S ET+ G++ A+ I VD Sbjct: 61 V-AFMGLRNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG L W+ IPLA + D + + +GP L +P VSMGNPHA+FFV DD D Sbjct: 120 MGPARLTWQEIPLAGAADTLHIE-LSVGP-----LSDPCAVSMGNPHAVFFV-DDADAID 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA++G L+ H +F N+ + + L +R WERGVG+T ACG+ ACAS VA+ Sbjct: 173 LATWGPLIEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRR 232 Query: 240 HK-TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 R V + GG L I W + + HV MTG A + G LD G W Sbjct: 233 GLIAGRTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279 >gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 276 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPTNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + G L VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFAPQEIPFQAAEQASSYSVELDGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] Length = 276 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 17/283 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN + I+ + +S D ++LI A D +R+ N Sbjct: 1 MHGLGNDYVYINCLNQKLKHPEEIARIVSDRHFGIGSDGLILICPSDRA--DFQMRMFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SISVDMGE 122 DGSE CGNG+RCV +++ + +R S ET G+ L DG S+ VDMG+ Sbjct: 59 DGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTVSSVRVDMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L K IP+ +D + +L VSMGNPHA+ F DD+ + LA Sbjct: 119 ASLKAKDIPVETDYDDFISQPMLVRGEVYLVT----CVSMGNPHAVVFC-DDVDNLPLAE 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L +H F EGVN ++ ++L +R WERG G T ACG+ ACASV A+ Sbjct: 174 IGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASVAAAIVNENC 233 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V++LGG L I H + V M G A ++G +++ Sbjct: 234 DFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIELDA 276 >gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. B076] gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 276 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] Length = 293 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 127/276 (46%), Positives = 173/276 (62%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R L + ++ TFET G+L +G +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD++ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWV-DDIHAYDLGQFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + ++HV MTG A+ E+EG+ D Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFDP 281 >gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1] gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1] Length = 296 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 130/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV L + + T ET G++ K + S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 128 GQPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293 >gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107] gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107] Length = 354 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 137/289 (47%), Gaps = 17/289 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R ++ + + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQDQLDVAISDPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E + CGNG+RC+ R+L + ET G++ + +G Sbjct: 60 DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119 Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG P L+ IP + R I V N V MGNPH + V DD Sbjct: 120 LRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDGVP----LNVASVGMGNPHVVVPV-DD 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L +G L HP+F N+ +V S L++R WERG G T ACG+ ACA++V Sbjct: 175 LSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGTGACATLV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 A+ L + V + GG LLI W V MTG A+ ++G + + Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDGVITPE 283 >gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1] gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1] Length = 281 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 97/277 (35%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID RG +T AL FDQ+ +I D+ D + Sbjct: 13 LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDS--DVEL 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + T T RG+L A + DG SV+MGEP+ Sbjct: 71 TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + W+ IPL + D + N P MGNPH FFVE D DL + G Sbjct: 131 MGWRDIPLKGACDTL----------NLPIDGTPVATGMGNPHCTFFVE-DADAIDLETLG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +HP+F + N+ A V + L +R WERGVG+T A GS++CA V++ T R Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + + GG + ++W + V+MTG + G+L Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGELTP 275 >gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] Length = 267 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 29/286 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D R AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115 +RI N DGSE CGNG RCV +++ +K T +T GI V K + +G + Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VD+G P L+ + + F VSMGNPH + FVE D+ Sbjct: 120 VTVDIGSP-LETEAVDFG-----------------DQFPFQSTRVSMGNPHLVTFVE-DI 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA Sbjct: 161 TQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 221 AVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str. 1704B] Length = 276 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WLDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] Length = 284 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++L+ VD Sbjct: 3 LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D+ D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPDEIPFVTQVDE-DIEGLYSLELADDKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 241 ASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 276 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQATCYTVDVDGQHV-DMAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] Length = 274 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 140/289 (48%), Gaps = 32/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + AI + D ++LI + A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---------NRD 113 RI N DGSE CGN RC+ +++ + +K+ T ET+ GI + Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRKLSGPHEEV 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P+ + I ++ + V+SMGNPH + FVE Sbjct: 123 TEVTVDMGCPV--------------IGETALEIEAGDYFYT--GTVISMGNPHLVIFVE- 165 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + +L G LL HP+F N+ + S + + ++ WERG G+T ACG+ ACA+ Sbjct: 166 DITNINLPVIGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATA 225 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VAS KT R V M GG L I W + + HV+MTG A K +EG+L+I Sbjct: 226 VASAVRGKTGRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274 >gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] Length = 277 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSN--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGNG+RC ++ + + +FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K IP+ + DK+ + V +G PH FV DD+ Sbjct: 119 DMGKPFFNSKDIPMNVTMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFV-DDITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS + S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 276 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP + G L VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRLVPEEIPFQAAEQAKSYSLDADGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 276 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNVPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642] Length = 276 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQASCYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] Length = 280 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 16/282 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +DF KM G+GN + I D G + T+ A + D +++I D + A D + Sbjct: 1 MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 RIIN DGSE + CGNG+RC +++ +++K FT ET GI+ + +N+ I+ Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG P + IP+ + ++ + + N + MG PH + +V DD+ Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGENWKVT----SLLMGVPHTVTYV-DDVDT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G L KH F + N++ A+ ++ +RTWERG G T ACG+ +C+ VAS Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 +T R V +++ G L IE+ ++ +V+MTG A + G Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTGT 275 >gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46] gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46] Length = 293 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 120/277 (43%), Positives = 165/277 (59%), Gaps = 4/277 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+R + + A++ D + FDQ+M++HD DA +RI Sbjct: 8 RFLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSE +CGNG RCV + + + T E+ G+L D +VDMG Sbjct: 68 YNRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGP 127 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ F R IGP++ L +P VVSMGNPHA+FFV+ D YDL Sbjct: 128 PHLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGR 187 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F E N+S+A+V + + + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 188 IGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLT 247 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V + GG L+I W +++HV MTG + EWEG+ Sbjct: 248 GRRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284 >gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] Length = 281 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 8/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ +VD Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + D I N+ L VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPQEIPFIADAPEALYD---IALANNEQL-TIDVVNMGNPHAVTIVP-DVITADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F + VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 176 ARLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + +V +++ GG L IEW + + V+MTG +EG++D+ Sbjct: 236 LLDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDL 276 >gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] Length = 321 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 5/298 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDAS 59 M S+ V F KM G+GN +V D R N+ + I AL + D FDQ++ + Sbjct: 15 MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITVERSPL-G 73 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118 VDAF+RI NCDGS+V +CGN RCV R L T ET G+L A +++V Sbjct: 74 VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L+W IPLA F IGP++ +L P +SMGNPHAIF+V+ D+ + Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVK-DVEAH 192 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G LL HP+F EG N+S+A V + + L+ WERG GLT ACG+AACA+ VA+ Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 K R ++ + GG + IEW + ++HV MTG + E+EG++D+ T +W + D+A Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310 >gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] Length = 280 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 130/282 (46%), Gaps = 19/282 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V++ + I AL+ FDQ+++I DA+ D RI Sbjct: 6 FSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDYAYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRG-ILVAKENRD----GSISV 118 N DGSEV+ CGNG RC ++L + RG I +A D V Sbjct: 66 YNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSITIAYVGTDSDGSEQYRV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP F +R + +VSMGNPHA+ V DD+ Sbjct: 126 DMGEPDFTP--------FTPAQTERLYQPVSAAGETLEMGIVSMGNPHAVCVV-DDVATA 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +A+ G L +HP+F VN ++ + LR +ERG G T ACG+ ACA+V Sbjct: 177 PVAAVGAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGTGACAAVAVGIM 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 +R V V++ G L I+W ++MTG A + G+L Sbjct: 237 RGLLDREVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278 >gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group] Length = 357 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 129/284 (45%), Gaps = 13/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A + D ++ + + D Sbjct: 73 LHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYT 131 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC RF+ SF T G+++ + DG + VDM Sbjct: 132 MRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDM 191 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 G+PIL IP K + V+ VSMGNPH + F + + Sbjct: 192 GQPILSGPDIPTKLPSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHV 250 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G H MF N V S L +R WERG G T ACG+ ACA VVA Sbjct: 251 DDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVA 310 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 + + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 311 AVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354 >gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] Length = 276 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +IT FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP S ++ + V + + VSMGNPHA+ V +D+ + + Sbjct: 121 GAPRLVPADIPFQAS----EQAASYALDVEGQSV-DIAAVSMGNPHAVLRV-NDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276 >gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] Length = 293 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 129/276 (46%), Positives = 170/276 (61%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW D +NHV MTG A+ E+EG+ D Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFDP 281 >gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] Length = 364 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 132/288 (45%), Gaps = 15/288 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAI---NALSTDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + D + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RFL K + ET G++ + DG Sbjct: 60 QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L+ IP +D + L V MGNPH + VE DL Sbjct: 120 LRVDMGAPFLEPSSIPTTLPL--VDGLARGSADLADRALE-VAAVGMGNPHVVVPVE-DL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L H +F N+ +V + L++R WERG G T ACG+ ACA++VA Sbjct: 176 NAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L + V + GG L I W + V MTG A ++G L Sbjct: 236 AVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVLSPD 283 >gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 246 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 9/252 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V D++ + + Sbjct: 121 PNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGG 254 V V++ GG Sbjct: 235 AEEVRVELPGGR 246 >gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6] gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6] Length = 297 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 135/294 (45%), Gaps = 15/294 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM+G GN +V+D +++ L DQI+++ VD Sbjct: 1 MRLHFTKMQGAGNDFVVLDATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDF 60 Query: 63 FIRIINC-DGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVD 119 RI N G EV+ CGNG RC RF+ + ET+ ++ DG ++VD Sbjct: 61 RYRIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVKVETVNSLIELHVEADGRVTVD 120 Query: 120 MGEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFF 170 M +PI + LIP L+ + F + P+ P V +SMGNPHA+ Sbjct: 121 MNQPIFEHALIPFDSAGLSARPHNGHGNGFELWPLQLPGASLPSVDVAVLSMGNPHAVQR 180 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D+ +A G + H F VN +V S + LR +ERG G T ACG+ AC Sbjct: 181 V-HDVDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGETLACGTGAC 239 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 A+VVA L + V V+ GG L I W H V MTG A+ + G +D+ T Sbjct: 240 AAVVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDLPT 293 >gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5] Length = 276 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] Length = 275 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + I+ L D ++LI + + D + Sbjct: 1 MIFTKMHGLGNDYVCINCFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 I N DGS CGNG+RC+ +++ +++ + ET GI L ++ + V Sbjct: 59 EIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAMV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+ IP+ D + D + N+ +SMGNPHA+ F+E ++ Sbjct: 119 DMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLE-EINGI 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L HP F E N+ VT+ + +++R WERGVG T ACG+ ACA+VVAS Sbjct: 174 SLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 T+ V VK+LGG L + W NHVF+ G A K ++G L Sbjct: 234 NDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275 >gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] Length = 269 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 16/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R IT ++ FDQ+ +I DA + Sbjct: 1 MTFMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVIEP---GKGDAHL 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + T RG L A++ DG SV+MG P Sbjct: 58 VFYNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA D ++ P MGNPH FFV D LA FG Sbjct: 118 LLWHEIPLAEEMDTLEL----------PIEGGPTATGMGNPHCTFFVA-DAEAIPLAEFG 166 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + NL +A++T + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 167 ARYEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 226 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V + + GG + I+W ++ V+MTG + L + Sbjct: 227 KVQIDLDGGTIWIDWREDG-VWMTGPTMHVFSATLTPE 263 >gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 276 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IP F ++ + + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + +P F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] Length = 279 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++M+ F KM+G GN +VID ++++D I L+ FDQ++L+ A D Sbjct: 2 ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVE--SSAVAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC VRF+ + +++ + ET GI+ K G ++V+ Sbjct: 60 FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P IP + H + N VSMGNPHA+ V DD+ Sbjct: 120 MGAPRFKPDAIPFVAASAAT-----HYALEVNDQAFNIAAVSMGNPHAVLTV-DDVETAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + HP F E VN+ +V + LR +ERG G T ACG+ ACA+ V Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 + + V V GG L I W + V MTG A + G++D+ Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDLDA 278 >gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] Length = 281 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I ++ FDQ++++ +VD Sbjct: 1 MLLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R K+ +T GI+ + +G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFMPHEIPFVTE----EFEALYTLELANEQSLKIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + H F + VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 176 ATMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 236 LLANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277 >gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908] gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908] Length = 279 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 146/280 (52%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ FAKM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFAKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+LD IP A+ +K + FL +SMGNPH + VE D+ H ++ Sbjct: 121 VPVLDPSKIPFNAKRVEKTYLLQTSSSHAMETFLCG--AISMGNPHCVLEVE-DIEHAEV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL ++ F +GVN+ +V + LR +ERG T ACG+ ACA+ Sbjct: 178 ERIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQLQG 237 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 K N+ V V + GG L I W + N ++MTG A+ ++G++ Sbjct: 238 KLNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277 >gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] Length = 282 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +DF KM G+GN + +D + L+ Sbjct: 1 MDFIKMHGLGNDFVCLDRFLDPAENNPAETDYSELAQRLCHRQLGIGGDGLLLILPSEKA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDG 114 DA +RI N DGSE + CGNG+RC R++ +++ T ET+ GI L K+ R Sbjct: 61 DARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQMKDGRVY 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG+P L K IP+ D++ R + VS+GNPH + F+ DD Sbjct: 121 GVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGIT----AVSVGNPHCVLFL-DD 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 D+ + G L KHP F N+ RV S E + ++ WERGVG T ACG+ ACASVV Sbjct: 176 FAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACGTGACASVV 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A+ +T R ++V + GG L IE+ + + MTG A+ + G+L Sbjct: 236 AAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280 >gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] Length = 284 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++++ VD Sbjct: 3 LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D+ D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPDEIPFVTQVDE-DIEGLYSLELADDKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] Length = 290 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 118/276 (42%), Positives = 170/276 (61%), Gaps = 3/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T++ A+++ +DQ+M++ + +AF+ I Sbjct: 9 FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + G +VDMG P Sbjct: 69 NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ +DL FG L Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG G+T ACGSAACA+ VA+ L + +R V Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GGGL IEW + ++HV MTG A E+ G D Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFDP 283 >gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121] gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121] Length = 269 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D D I L FDQ++++ + +D RI NC Sbjct: 1 MHGLGNDFVVVDAVSRKVYFNKDMIARLGDRHTGIGFDQLLVVEPPTNPDMDFRYRIFNC 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG+EV+ CGNG RC F+ + + ET G + + +G ++VDMG P + Sbjct: 61 DGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P + + D + ++ VS+GNPHA+ V D+L + G + Sbjct: 121 ADLPFTGTANGAFYD-IPVAGESYPITP----VSVGNPHAVHKV-DELSDEYVERIGEAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H +F VN+ ++ S ++LR +ERGVG T ACG+ CA+VVA V Sbjct: 175 ESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAKVK 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +LGG L IEW + + MTG K +EG++ + Sbjct: 235 ANLLGGELTIEWQGEGQPILMTGPTAKVFEGQIYL 269 >gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902] gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902] Length = 355 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 90/289 (31%), Positives = 138/289 (47%), Gaps = 17/289 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + + + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E + CGNG+RC+ R+L + ET G++ + +G Sbjct: 60 DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119 Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG P L+ IP + R I V N V MGNPH + VE D Sbjct: 120 LRVDMGAPFLESASIPTTLEPLAGLPRGALEIDGVP----LNVASVGMGNPHVVVPVE-D 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L +G L HP+F N+ +V + + L++R WERG G T ACG+ ACA++V Sbjct: 175 LSRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 A+ L + V + GG LLI W + V MTG A+ ++G + + Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDGVITPE 283 >gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] Length = 305 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 27/305 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + F KM G GN + +D DN + AI+ D ++LI + A Sbjct: 3 RRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG--ILVAKENRDGSI 116 D F+ + N DGS+ Q CGNG+RCV +F+ + + T +T+ G IL K DG + Sbjct: 61 DFFMEMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKV 120 Query: 117 ---SVDMGEPILDWKLIPLAR---------SFDKMDRDRFHIGPVNHLFL-----RNPFV 159 V+MG PIL+ IP+ + + V+ + Sbjct: 121 ETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTA 180 Query: 160 VSMGNPHAIFFVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 VSMGNPHAI +++ D+ +++ G H F E +N +V +L++R WER Sbjct: 181 VSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER 240 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWE 276 G G T ACG+ ACAS+VA+ + ++ +LGG L I W + N V++ G AK + Sbjct: 241 GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFT 300 Query: 277 GKLDI 281 G++DI Sbjct: 301 GEVDI 305 >gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 284 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 15/285 (5%) Query: 11 MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V++ IT + AL+ DQI+L+ D RI N Sbjct: 1 MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG EV+ CGNG RC VRF+ + + E +L K + DG + VDMG PI D Sbjct: 61 ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120 Query: 127 WKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181 LIP + + + + P++ + V +SMGNPHA+ V D+ + Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVV-GDVDSAPVL 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + +HP F VN+ +V + + LR +ERG G T ACG+ ACA VV+ Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG+ +I Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284 >gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] Length = 293 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 119/287 (41%), Positives = 164/287 (57%), Gaps = 5/287 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V D R +T D I L FDQ++ + VDAF+RI N Sbjct: 1 MNGLGNDFVVWDAREKPLRLTKDQIAKLGDREHGIGFDQMITVERST-CGVDAFMRIHNS 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILDWK 128 DG +V +CGN RC+ R L + T ET G+L A + +++VDMG+P L+W Sbjct: 60 DGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLNWD 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA F IGP++ L P VV+MGNPHAIF+V+ D+ YDLA G LL Sbjct: 120 QIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVK-DVEAYDLARVGPLLE 178 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 +HP+F EG N+S+A + + ++ WERG GLT ACG+AACA VA+ KT R ++ Sbjct: 179 RHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKTTI 238 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 + GG + IEW + + HV MTG + E+EG++DI+T W K D Sbjct: 239 HLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRKTAGGDA 285 >gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 276 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 139/282 (49%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPDEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 276 Score = 317 bits (814), Expect = 9e-85, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP F+ ++ + V+ + + VSMGNPHA+ V +D+ + + Sbjct: 121 GAPRLVPADIP----FEATEQAVSYALDVDGKTV-DIAAVSMGNPHAVLRV-NDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HEWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276 >gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] Length = 290 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 120/277 (43%), Positives = 166/277 (59%), Gaps = 3/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+++D+R +++ A++ +DQ+M++ + AF+RI Sbjct: 9 FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHAIF+V DD+ YDL G L Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWV-DDIEAYDLERLGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A V + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFDPD 284 >gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A] gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A] Length = 279 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + + S + + D ++ + D D Sbjct: 1 MYFFKYQGLGNDFILIDNRSSSELLLSSGQILKMCNRHFGIGADGVIFLL-SGDKVSDYG 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 + I N DGSE + CGNG+RC++ F+++ K + +T+ GI+ A+ + V+ Sbjct: 60 MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119 Query: 120 MGEPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P+ K IP S + + I N L V+MGNPH I FVED Sbjct: 120 MGTPLFLNKQIPTTLSDKDNTVINYPLEIEKKNWLVT----CVNMGNPHCITFVEDT-NL 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L H F E +N + L +R WERG G T ACG+ ACASVVA Sbjct: 175 INLEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 ++ R +V++ GG LLIEW ++ N V+MTG A++ + G+ + Sbjct: 235 ITNRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278 >gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] Length = 274 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 141/292 (48%), Gaps = 32/292 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ N AI + D ++LI + A D Sbjct: 2 TEPIRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--------- 110 +RI N DGSE CGN RC+ +++ + +K+ T ET GI + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSR 119 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMG P++ + + + VVSMGNPH + F Sbjct: 120 EEVIEVTVDMGCPVVGEAALEIEA----------------GGYFYTGTVVSMGNPHLVIF 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VE D+ + +L + G LL HP+F N+ +V +++ + ++ WERG G+T ACG+ AC Sbjct: 164 VE-DIANINLPAIGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGAC 222 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 A+ VA KT R V M GG L I W + + HV+MTG A K +EG+L+I Sbjct: 223 ATAVAGVIRRKTGRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274 >gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] Length = 277 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC ++ +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ DK+ + V +G PH F+ DD+ Sbjct: 119 DMGKPFFKSQDIPMNVDMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFI-DDITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217] gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217] Length = 277 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 99/279 (35%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D R +T I A++ FDQ+ +I DA Sbjct: 7 TGLPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDA 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + T RG LVA + G SV+MG+ Sbjct: 64 HLTFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQ 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW IPLA + D ++ GPV MGNPH FFV D LA Sbjct: 124 PQLDWAEIPLAEAMDTLEL-PIEGGPV---------ATGMGNPHCTFFVA-DAEAVPLAQ 172 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 173 FGPRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 232 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V + + GG + ++W ++ V+MTGE G L Sbjct: 233 GRRVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVLTP 270 >gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205] gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205] Length = 284 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 3 LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDADFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPAEIPF-LTDEHEDTEGLYKLGLADNKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG ++ +LD++ Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280 >gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035] gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035] Length = 277 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 140/279 (50%), Gaps = 16/279 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D RG +T I A++ FDQ+ +I DA Sbjct: 7 TGLPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDA 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R L + T RG LVA + G SV+MG+ Sbjct: 64 HLTFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQ 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW IPLA + D ++ GPV MGNPH FFV D LA Sbjct: 124 PQLDWAEIPLAEAMDTLEL-PIEGGPV---------ATGMGNPHCTFFVA-DAEAVPLAQ 172 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 173 FGPRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 232 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 RAV V + GG + ++W ++ V+MTGE G Sbjct: 233 GRAVRVDLDGGTIHVDWREDG-VWMTGETAHVASGVFTP 270 >gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125] gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125] Length = 286 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 100/287 (34%), Positives = 147/287 (51%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + +D + + + A+ + D ++LI A V Sbjct: 1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPV-- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115 +R+ N DGSE ++CGNG+RCV +F +K SF ET+ G++ A + + + Sbjct: 59 KMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVDT 118 Query: 116 ISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MGEP L IP+ ++ + F IG + VSMGNPHAI F+ D Sbjct: 119 VTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRLT----AVSMGNPHAIMFI-DT 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL KH F + VN+ +V S + R WERG G+T ACG+ ACA+VV Sbjct: 174 IEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAVV 233 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AS T + V+V +LGG L I W +N V MTG A+ EG Sbjct: 234 ASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEGTY 280 >gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] Length = 293 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 124/277 (44%), Positives = 164/277 (59%), Gaps = 4/277 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+RG + A++ D + FDQ+M++HD A DA +RI Sbjct: 8 RFLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSE +CGNG RCV + + T ++ G+L +VDMG Sbjct: 68 YNTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGP 127 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPLA F R IGP++ L +P VVSMGNPHA+FFV+ D YDLA Sbjct: 128 PRLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLAR 187 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F E N+S+A+V E + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 188 IGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLT 247 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V + GG L+I+W +++HV MTG + EWEG L Sbjct: 248 GRRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284 >gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] Length = 269 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + ++ D I L+ FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF L + T G LV + + ++V+MG P + Sbjct: 61 DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P F ++ ++ P + + VSMGNPH + VE D+ + S G LL Sbjct: 121 ASLP----FRANKVEKTYLLPTD-VQTVLAGAVSMGNPHCVIRVE-DIDSAPVESVGPLL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG G T ACG+ ACA+ V V Sbjct: 175 ERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRVR 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V + GG L I W + V+MTG A ++G++++ Sbjct: 235 VDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269 >gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] Length = 304 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 145/286 (50%), Positives = 193/286 (67%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GN+I+V+D+RG I++ A AL+ D T FDQIM IHD + DA++R Sbjct: 13 VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IIN DGSE ++CGNG RCVV+ L + R+ FTFET GIL A E DG I+VDMG P Sbjct: 73 IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F IGP++ L +P V SMGNPHAIF+V+ D++ Y+L FG Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++ +T R Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V+V + GG LLI+W D++HV MTG A+ W G+LD TG +++ Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVRDET 298 >gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] Length = 272 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 15/278 (5%) Query: 11 MEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN + ++ D+ S AI D +++I D D +R+ N Sbjct: 1 MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDD--CDFKMRMFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVDMGE 122 DGSE + CGN RC+ +F+ + + T ET+ G+ K + +++VDMGE Sbjct: 59 DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + LIP + + + N N VSMGNPHA+ F + DL Sbjct: 119 PIFESGLIPTTINKPSIINEPVTF---NSEIKYNITCVSMGNPHAVIFTTG-IDKLDLNK 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +F N V S + + +R WERG G T ACG+ ACASVVA+ T Sbjct: 175 IGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNGHT 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R +V++LGG L IEW + +N V++TG A +EG + Sbjct: 235 GRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272 >gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] Length = 280 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 139/283 (49%), Gaps = 16/283 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KMEGIGN + ID + I +S D +++I + + D Sbjct: 1 MLKFTKMEGIGNDYIYIDGIHQDVPMNPHFITKISDRHFGIGSDGVIVIQESEI--CDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGNG+RC +F+ K+ ET+ GI L+ N+ + Sbjct: 59 MRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKVQYVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL K IP ++M + + + +SMGNPH + ++ Sbjct: 119 VNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLT----SLSMGNPHTVIYMNH--LD 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +++ G KH +F E VN V + + L +R WERG G T ACG+ ACA + AS Sbjct: 173 FNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAVMYASY 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V++LGG L I + +N ++M+G A +EG + Sbjct: 233 INGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEGIIQ 274 >gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] Length = 291 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 119/288 (41%), Positives = 166/288 (57%), Gaps = 5/288 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V D R +T I + + FDQ++ + + AF+RI N Sbjct: 1 MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITVEPA-SSDAYAFMRIHNR 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILDWK 128 DGSEV +CGN RC+ R L S T +T G+L+A + + +SVDMG P L+W Sbjct: 60 DGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLEWD 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA F IGP++ L +P VV++GNPHAIF+V DD+ +DL FG LL Sbjct: 120 QIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWV-DDIEAHDLERFGPLLE 178 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HPMF E N+S+A++ + L+ WERGVGLT ACG+AACA+ VA+ + R +V Sbjct: 179 CHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKCTV 238 Query: 249 KMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 + GG L IEW ++N H+ MTGE E+EG+L++ T + K D A Sbjct: 239 HLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286 >gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF] gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii] Length = 281 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 8/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 1 MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+M Sbjct: 61 KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + + + + + VV+MGNPHA+ V D+ D+ Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F E +N +V + + LR +ER VG T ACG+ ACA+ V+ Sbjct: 176 AGIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 276 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 97/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP + ++ R + N VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ V + LR WER G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] Length = 277 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 13/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D ++T + I LS F+Q++++ D S+D Sbjct: 1 MRFSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG+RCV RF+ +++ T G + D ISV+MGE Sbjct: 61 RIYNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP F + ++ P + VVS+GNPH I VE + L Sbjct: 121 PIFEPDKIPFI--FPQYQKNYILFLPTQTILCG---VVSIGNPHCIVLVE-TIESVSLNI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F + N+S R+ E+++LR +ERGVG T ACGSAACA+V Sbjct: 175 LGPALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLL 234 Query: 243 NRA---VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V V +LGG L + W ++M G ++G + + Sbjct: 235 IREERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDGCIHL 277 >gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03] gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07] gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22] gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26] gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32] gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12] Length = 270 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 143/281 (50%), Gaps = 15/281 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +++D R H ++T I AL+ DQ++ + D Sbjct: 1 MLTSFRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+R N DGSE +CGN RCV + ++ +T G L A+ +G I+VDMGE Sbjct: 61 FVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+W+ +PLA D + +P SMGNPHA FFVED + S Sbjct: 121 PRLNWQDVPLAAEMDTLHL----------PLEGDPAAASMGNPHATFFVEDFVR----LS 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + Sbjct: 167 QGHALEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLI 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 R V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 227 GRVCEVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDLAA 267 >gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] Length = 277 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 138/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC ++ +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ + DK+ I V +G PH F+ DD+ Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDLDINGE----TVTVSSVLLGVPHTEVFI-DDITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS + S Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] Length = 266 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 136/273 (49%), Gaps = 16/273 (5%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRII 67 KM G+GN +V+D R +T ++ FDQ+ ++ + DA + Sbjct: 1 MKMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFY 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS +CGN RC+ R L + T RG L A++ +G SV+MG P LDW Sbjct: 58 NADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDW 117 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA D ++ P MGNPH FFVE D L FG Sbjct: 118 QDIPLAEEADTLEL----------PIEGGPTATGMGNPHCTFFVE-DAEVIPLEEFGQRY 166 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP++ + N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T R V Sbjct: 167 EHHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQ 226 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L I+W ++ V+MTG ++G L Sbjct: 227 IDLDGGTLWIDWAEDG-VWMTGPTMHVFDGTLT 258 >gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 276 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 1 MLIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF L + R T RG + + + ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F ++ ++ + VVSMGNPH + V + + Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-VVSMGNPHCVIEVPS-VADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+ V Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] Length = 269 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 17/279 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 V F KM G+GN +++D R +T+ AL+ DQ++L+ A D Sbjct: 1 MRVSFTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPSDSA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DG EV++CGN R V + ++ ET G++ G+ VDMG Sbjct: 59 FRMRIFNADGGEVEACGNASRAVA-----LLHGEAANVETSGGVIAIAPASGGA-RVDMG 112 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P DW+ IPLA + D + PV L P V++GNPH +FFV DD L Sbjct: 113 VPRFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFV-DDADAVPLD 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + P+F E +N++IA +T ++L L WERGVGLT ACG+ ACA+ +A+ Sbjct: 166 TMGPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGL 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R V+V + GG L IEW ++H+ MTG A + + G D Sbjct: 226 TGRKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264 >gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48] gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48] Length = 276 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 133/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP + G V VSMGNPH++ V DD+ + Sbjct: 121 GPPRFVPADIPFIADEQALSYPLEVDGQV-----HQIAAVSMGNPHSVLRV-DDVRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V++ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276 >gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] Length = 280 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN + I+ + +D D ++ I DA+ Sbjct: 1 MRFTKMQGAGNDYVYINCFAEQFPADPAEVARQMSDRHFGVGGDGVIYICPSNQ-GADAW 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVA----KENRDGSIS 117 +R+ N DGSE + CGNG+RCV +F+ + + +T GIL K + + Sbjct: 60 MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PI++ IP + G + VSMGNPH + FV + Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFEVT----SVSMGNPHCVVFVPEATDE 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + PMF VN+ V S L RTWERG G T ACG+ A A VA Sbjct: 176 L-VLGIGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 +T R V++ +LGG L +EW++ +N ++ TG A + + G+ Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPAVEVFSGE 276 >gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101] Length = 395 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + F+K +G+GN L++D R D +T + + L D ++L + Sbjct: 16 LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116 + +RI N DG+E + CGNG+RC+ RFL R +++ +T+ G +V + DG+I Sbjct: 76 -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L +P + + +F MGNPH + V + Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVFA--VAAAGMGNPHVVIPVP-LVE 191 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG LL HP F N+ +V S + L +R WERG G T ACG+ ACA++V+ Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 L +R + + GG L I W + VFM G A+ ++ + Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAEHVFDAVI 295 >gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 269 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 28/287 (9%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D + +N A+ + D ++LI + A D + Sbjct: 1 MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDG----SI 116 + N DGS CGNG+RCV ++ RK T ET GI + + Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQL 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P IP + + + F+ +SMGNPHA+ FV DD Sbjct: 119 TVDMGRPEQT-SEIP----------ESIEVDGKEYQFIG----ISMGNPHAVLFV-DDTA 162 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L S G H F + N +V + +R WERG G T ACG+ ACAS VAS Sbjct: 163 AVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVAS 222 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 223 ILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269 >gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] Length = 277 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 139/283 (49%), Gaps = 11/283 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID +++ + + L+ DQI+LI + D Sbjct: 1 MKLKFTKMHGLGNDFIVIDAVNQQISLSPEQLRRLADRHLGVGCDQILLIEKAE-GDADF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VR++ ++ ET+ G+++ + DG ++V+M Sbjct: 60 RYRIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D IP R + ++ + VSMGNPHA+ V DL + + Sbjct: 120 GVPKFDPVEIPFIAE----QRAPTYSLSLDDRQVE-ISSVSMGNPHAVQVVS-DLDNAPV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ KH F + VN +V + LR +ERG G T ACG+ ACA+ VA Sbjct: 174 LTEGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGIQRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V G L I W +N V+MTG A ++G+++++ Sbjct: 234 LLESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276 >gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21] gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21] Length = 292 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 18/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQD 57 + ++V F+KM G+GN +VID ++ + + + D ++ + + Sbjct: 3 ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN---- 111 D RI N DGSE + CGNG+RC +++ ++ K ET+ GI + + Sbjct: 63 EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 S SVDMG P IP+ ++ + N V++GNPHA+ F Sbjct: 123 EVRSSSVDMGIPTFKSVEIPMKTEKEEFLDAELDVNGT----TVNLTAVNVGNPHAVIFT 178 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E+ + DL G + HP F E N+ V + +++ TWERG G T ACG+ A A Sbjct: 179 EN-IEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTGATA 237 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 SV+A L K + V V + GG LLI ++ +FM GEA ++G ++++ Sbjct: 238 SVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291 >gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] Length = 286 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G GN +V D RG N D + D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L +K K + ET G+ +AK D Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIND-K 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPT--TIEKKINSIPSHEFIEKNFKYIGYAVGMGNPHLIFFVQ-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AK+ + G + Sbjct: 239 AYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283 >gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] Length = 277 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC ++ +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ + DK+ ++ V +G PH F+ DD+ Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDLNVNGE----TVTVSSVLLGVPHTEVFI-DDITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS S Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2] gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2] Length = 290 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 123/276 (44%), Positives = 170/276 (61%), Gaps = 3/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +++ A++ + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V DD+ YDL FG L Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWV-DDIDAYDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +TNR V Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFDP 283 >gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10] gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1] Length = 269 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 132/287 (45%), Gaps = 28/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D +N A+ + D ++LI + A D + Sbjct: 1 MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKE----NRDGSI 116 + N DGS CGNG+RCV ++ RK T ET GI + + Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQL 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P IP + + + F+ +SMGNPHA+ FV DD Sbjct: 119 TVDMGRPEQT-SEIP----------ESIEVDGKEYQFIG----ISMGNPHAVLFV-DDTA 162 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L S G H F + N +V + +R WERG G T ACG+ ACAS VAS Sbjct: 163 AVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVAS 222 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 223 ILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269 >gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] Length = 290 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 8/278 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN +V+D N+ S+ I A++ DQ++L+ + D RI N Sbjct: 1 MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV++CGNG RC V+F+ + R E G + N D +++VDMG P Sbjct: 61 DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120 Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + SF ++ + P+++ + +VSM NPHA+ V D+Y ++S G Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIVP-DVYTAPVSSQG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F+ +N ++ S ++LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V M GG + I + D V M G A +EG +DI Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDID 276 >gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272] Length = 279 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 10/256 (3%) Query: 30 ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF- 87 + + I L+ FDQ++++ D +D RI N DGSEV CGNG RC RF Sbjct: 30 FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89 Query: 88 -LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 L ++ T G +V D + V+MGEP + +P F ++ +I Sbjct: 90 RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRANKAEKTYI 145 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 + VVSMGNPH + V DD+ + + G +L H F E N+ +V Sbjct: 146 MRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVK 203 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265 E + LR +ERG G T ACGS ACA+V + V V++ GG L I W H + Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPL 263 Query: 266 FMTGEAKKEWEGKLDI 281 +MTG A ++G + + Sbjct: 264 YMTGPAVHVYDGFIHL 279 >gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] Length = 279 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + I D G + + + A+ D +++I + A D + Sbjct: 1 MKFVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SIS 117 RIIN DGSE + CGNG+RC +++ M + FT ET+ GI+ K DG ++ Sbjct: 59 RIINADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG+P + + IP+ + + + + + MG PH + +V+ D+ Sbjct: 119 INMGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRIT----SLLMGVPHTMIYVK-DVEQ 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL G HP F + N++ + ++ + TWERG G T ACG+ +CA V S Sbjct: 174 VDLPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSF 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V V++ G L I++ + + +V+MTG A + G+ + Sbjct: 234 LNGFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSYTGEWE 277 >gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619] gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619] Length = 276 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDM Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P IP ++ G L + VSMGNPHA+ V DD+ + Sbjct: 121 GPPRFIPAEIPFVADEQALNYPLEVDGE-----LHSIAAVSMGNPHAVLRV-DDIRTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HGLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276 >gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] Length = 281 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 139/289 (48%), Gaps = 19/289 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D ST D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTQYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-----LVAKENRDG 114 +RI N DGSE CGN RC+ ++L K+ T +T+ GI VA + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVN 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVED 173 +++VDMG P + ++D P+ R VSMGNPH + FV + Sbjct: 120 TVTVDMGIPADEP------VNYDGNGAKPMKEQPILIEGKRYVGTTVSMGNPHIVIFV-N 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ DLA+ G + HP+F +N+ A+V + +R WERG G+T ACG+ ACA+ Sbjct: 173 DITDTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATA 232 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VA+ + R + M GG + I+W + HV MTG A K +EG++++ Sbjct: 233 VAAFLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281 >gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] Length = 282 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 144/282 (51%), Gaps = 7/282 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN +VID H + + I FDQ++L+ + Sbjct: 2 AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + + T +G++V +G ++VDM Sbjct: 62 GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L IP + + + +H ++ R V+MGNPHA+ V DD++ + Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASARF-SCVNMGNPHAVLVV-DDVHCAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G L +HP F E VN+ +V + LR +ERG G T ACG+ ACA+ VA Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V V + GG L IEW +NHV M+G A +EG + Sbjct: 240 LLARQGAVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTVT 281 >gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] Length = 267 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 96/273 (35%), Positives = 137/273 (50%), Gaps = 16/273 (5%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67 KM G+GN +V+D R +IT ++ FDQ+ +I DA + Sbjct: 1 MKMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFY 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS +CGN RC+ R L + T RG+L+A++ +G SV+MGEP LDW Sbjct: 58 NADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDW 117 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA D ++ P MGNPH FFV D+ LA FG Sbjct: 118 QDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFV-DNAEVIPLAEFGARY 166 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T+R V Sbjct: 167 EHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQ 226 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L I+W + V+MTG +G Sbjct: 227 IDLDGGTLWIDWRKDG-VWMTGPTMHVADGHFT 258 >gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145] gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145] Length = 275 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 137/279 (49%), Gaps = 9/279 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62 ++ F+KM G+GN +VID + + + I FDQ++L+ D +D Sbjct: 1 MLLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++V+M Sbjct: 61 HYRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP+ + +P + + + + L + GNPH + DD+ + Sbjct: 121 GEPMFEPASVPFKAQKPE---HTYVLRVADETVLCGVMGL--GNPHCVIET-DDVNTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 AS G +A+H F E VN+ ++ S + + LR +ERGVG T ACGS ACA+ V Sbjct: 175 ASLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQD 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K R V V + GG L I W V MTG A ++G++ Sbjct: 235 KLERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQM 273 >gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 294 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 150/290 (51%), Positives = 197/290 (67%), Gaps = 1/290 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + + Sbjct: 2 ASTAPFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DG+ Q+CGNGMRCVV+ L + +K FTFET+ GIL A+E+ DGSISVDMG Sbjct: 62 FIDILNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGT 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VVSMGNPHAIF+V++D++ Y+L Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+ ++T Sbjct: 182 FGPLLENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRT 241 Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R+VS+ GG L +EW D++HV +TG A+ E+ G D G W + E Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTE 291 >gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 271 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G+GN +V+D +T A+ L+ DQ++L+ + +D RI N Sbjct: 1 MQGLGNDFVVLDGVRQSIELTESAVRQLADRHFGIGCDQLLLVEKSDRSDIDFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC VRF+ + + ET +GI++ + +G ++VDMG P+ D Sbjct: 61 DGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPVFDP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + G V + +SMGNPHA+ VE+ + + + G L+ Sbjct: 121 SEIPFDSDQPALTYPLDLDGNVVEI-----SAISMGNPHAVQVVEN-IETAPVETQGPLI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F VN +V + LR +ERG G T ACG+ ACA+ VA + V+ Sbjct: 175 EHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDHTVT 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V GG L+I+W H V MTG A + G++++ Sbjct: 235 VSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIEL 269 >gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia stuttgartiensis] Length = 277 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 19/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM GIGN + ++ C + D + D ++LI + A D Sbjct: 1 MKFTKMHGIGNDYVYVN---CFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--D 55 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGS 115 +RI N DGSE Q CGNG+RCV +++ +++ T ET+ GI + R S Sbjct: 56 CKMRIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCS 115 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG P L IP+ + ++ + + N VSMGNPH + FV DDL Sbjct: 116 ARVNMGRPKLMRPEIPMVGAETQVVDEMLVL---NENTSFRVTCVSMGNPHCVIFV-DDL 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G + H +F E N+ +V + + TWERG G+T ACG+ A A VA Sbjct: 172 KQLHIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVA 231 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + T R + + GG L +EW ++ +V+MTG A + + G+ Sbjct: 232 GVLNNLTERKLLAHLPGGDLELEWVEDENVYMTGAAAEVFTGE 274 >gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] Length = 293 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 14/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDF-QDASVDA 62 + F KM GIGN + I D+ ++ A+ D ++L+ + DA Sbjct: 3 LRFVKMHGIGNDYIYISGFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEADA 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGILVAKENRD------ 113 +R+ N DGSE CGNG+RCV +FL ++ +T G+L D Sbjct: 63 VMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDRV 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V+MG PIL IP D + VSMGNPH + FVE Sbjct: 123 RRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE- 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ DL G LL +H F + VN+ +A+V + + +RTWERG G+T ACG+ ACA + Sbjct: 182 DVASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAVL 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 VA +T RA + + GG L +EW D V MTG A +EG D Sbjct: 242 VAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289 >gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565] gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565] Length = 276 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 1 MLIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF L + R T RG +V + + ++V+M Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F ++ ++ + VVSMGNPH + V + + Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-VVSMGNPHCVIEVPS-VADAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ +H F E VN+ + + + LR +ERG G T ACG+ ACA+ V Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 K V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276 >gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] Length = 279 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 16/282 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F KMEGIGN + D I +S D +++I + + D Sbjct: 1 MLKFLKMEGIGNDYVYFDGINQDVPTDETFIKKVSNRHIGIGSDGVIIILPSE--TCDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117 +R+ N DGSE + CGNG+RC +F+ + + + ET+ GI + N DG ++ Sbjct: 59 MRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVTSVC 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPI IP+ S +M I + VSMGNPH I +V D Sbjct: 119 VDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTY----YCTAVSMGNPHVIQYV--DTLD 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ + G +F E VN +V E L +R WERG G T ACG+ ACA + AS Sbjct: 173 FDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMYASY 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +K + V V++LGG L IE D +FMTG A+ +EG L Sbjct: 233 LNNKCDEKVDVELLGGHLQIELRDKK-IFMTGPARTTFEGTL 273 >gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens] gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 276 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+M Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + G L VSMGNPHA+ V D+ + Sbjct: 121 GAPRLVPADIPFQAPAQALSYQVDVDGATVEL-----AAVSMGNPHAVLRVA-DINSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] Length = 277 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 99/280 (35%), Positives = 136/280 (48%), Gaps = 15/280 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V D R IT ++ DQ+ LI + DA Sbjct: 7 TGLPFMKMHGLGNDFVVFDGRARDIAITPALARLVADRHRGIGCDQLALITA--EGPGDA 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R L + R + T RG L A++ G SV+MG Sbjct: 65 HLTFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGA 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW IPLA + D ++ P MGNPH FFVE D LA Sbjct: 125 PQLDWAEIPLAEAMDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAERVALAE 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP+F E N+ +A + + L +R WERGVG T A GS++CA+ VA+ T Sbjct: 174 FGPRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLT 233 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 R V++ + GG L I+W ++ V+MTG +G L Sbjct: 234 GRCVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVLTPD 272 >gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] Length = 283 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 136/284 (47%), Gaps = 14/284 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K EG+GN ++ID R + + +A D ++ + + D Sbjct: 6 GTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLL-SAETGAD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE Q CGNG+RC+ F + ET G+L DG + V Sbjct: 65 FRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRV 124 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P L IP LA + K +G V+ V+MGNPHA+ FV D+L Sbjct: 125 DMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVT----CVNMGNPHAVVFV-DELA 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG L + F E VN A V S L ++ WERG G T ACG+ ACA +VA+ Sbjct: 180 TVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAA 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ++ +V++ GG + I W NH+ MTG A+K + G L Sbjct: 240 VLNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL 283 >gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 276 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + D + VSMGNPHA+ V DD+ + Sbjct: 121 GAPRLVPADIPFQAPA-QADSYTLDVDGRQVQL----AAVSMGNPHAVLRV-DDINSAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR] gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR] Length = 275 Score = 315 bits (807), Expect = 6e-84, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 142/279 (50%), Gaps = 9/279 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F+KM G+GN +V+D + + D I + FDQ++L+ D +D Sbjct: 1 MLLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++VDM Sbjct: 61 HYRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP+ + +P F ++ ++ V + V+ +GNPH + V D++ + Sbjct: 121 GEPLFEPAAVP----FKAQKAEQTYVLRVKEETVLCG-VLGLGNPHCVIAV-DNVDTTPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G LA H F E VN+ + S + + LR +ERGVG T ACGS ACA+ VA Sbjct: 175 ETLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V + GG L+I W V MTG A+ ++G++ Sbjct: 235 LLNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273 >gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] Length = 281 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 136/287 (47%), Gaps = 17/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM+GIGN + I+ S +S D ++L+ A D Sbjct: 1 MQLHFYKMQGIGNDYVYINAMETKVPNPSALSKTVSDRHFGIGSDGLILLLPSTVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRDGSI 116 +++ N DGSE + CGNG+RCV + K +S T ET+ GI L ++ + S+ Sbjct: 59 RMQMFNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P ++ + IP+ + +M + + VSMGNPHA+ F D + Sbjct: 119 CVDMGSPSMEIEKIPVRYTERRMVEAPLTVNGTTYSVT----CVSMGNPHAVIFT-DGID 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +L G H +F E VN L +R WERG G T ACG+ ACA VVA+ Sbjct: 174 EMELEKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAA 233 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W DN+ V+MTG A+ + G ++I Sbjct: 234 CLTKRCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279 >gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] Length = 288 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V D +T + ++ DQI+++ VD Sbjct: 12 TRLRFTKMHGLGNDFVVFDGVNQTVTLTPERCRRIADRHFGVGCDQILVVEKPTRPDVDF 71 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG ++VDM Sbjct: 72 RYRIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDM 131 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +P + + IG + VVSMGNPHA+ V +DL + Sbjct: 132 GAPRFAPAEVPFVAEAEALTY-PLKIG----QHRLDIAVVSMGNPHAVLRV-NDLDSAPV 185 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ H F + VN +V + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 186 DILGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVSGIRQG 245 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VSV GG L+IEW V MTG A+ +EG+L++ Sbjct: 246 ALASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287 >gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G] Length = 279 Score = 314 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 120/256 (46%), Gaps = 10/256 (3%) Query: 30 ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF- 87 + + I L+ FDQ++++ D +D RI N DGSEV CGNG RC RF Sbjct: 30 FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89 Query: 88 -LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 L ++ T G +V D + V+MGEP + +P F ++ +I Sbjct: 90 RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRANKAEKTYI 145 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 + VVSMGNPH + V DD+ + + G +L H F E N+ +V Sbjct: 146 MRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVK 203 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265 E + LR +ERG G T ACGS ACA+V V V++ GG L I W H + Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPL 263 Query: 266 FMTGEAKKEWEGKLDI 281 +MTG A ++G + + Sbjct: 264 YMTGPAVHVYDGFIHL 279 >gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] Length = 284 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDA---INALSTDDNTHFDQIMLIHDFQD 57 +++ F K G+GN ++ID R ++++ I+ D I+LI Sbjct: 2 TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILPP-V 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114 A D ++I N DGSE + CGNG+RC++R++ + SF ET+ G + +G Sbjct: 61 AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAGKIQINI-EEG 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +I VDMG PI + IP ++ + I ++ FL SMGNPHAI V Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFL--VSACSMGNPHAIIEVP-T 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + L +G L HP+F + N+ +V S +++ WERG G T ACG+ ACA + Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L K N + VK+ GG L I W +FM G+AK + G +I Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284 >gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11] gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11] Length = 261 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 91/267 (34%), Positives = 132/267 (49%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + D I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + S + T +G ++ K D I+V+MGEP+ + IP Sbjct: 61 GNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEPVFEPNKIP---- 116 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F ++ ++ V+ L + VSMGNPH V DD+ YD+ +G L+ H F E Sbjct: 117 FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKYGPLVESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN ++ S + LR +ERG G T ACGS AC +V V V + GG L Sbjct: 175 RVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLGEEVKVSLPGGDL 234 Query: 256 LIEWHDNN-HVFMTGEAKKEWEGKLDI 281 I W + +FMTG A ++G+L I Sbjct: 235 YIVWQGSGKPLFMTGPATHVYDGQLSI 261 >gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 127/277 (45%), Positives = 172/277 (62%), Gaps = 4/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRI 66 FAKM GIGN+I+V+DMR +T D A+++ +DQ+M++ + +AFI I Sbjct: 9 FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPIL 125 N DGSE +CGNGMRCVVR + + + + TFET G+L A + +VDMG P Sbjct: 69 YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP+++ L +P VVSMGNPHAIF+V DD+ YDLA FG Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWV-DDVNAYDLARFGP 187 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFDP 284 >gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] Length = 269 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 107/277 (38%), Positives = 147/277 (53%), Gaps = 16/277 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID R +++ AL+ DQ++L+ + A D Sbjct: 1 MRIPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG EV++CGN R V +L ET+ GI+ A + G ISV MG Sbjct: 59 RMRIFNPDGGEVEACGNASRAVGLYLGGDK-----RIETLGGIIAASTSDTG-ISVAMGR 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W IPLA D + PV L P V++GNPH IFFV D + DLA Sbjct: 113 PRFGWDEIPLAYPMDTLTM------PVGWEDLVEPVAVNVGNPHVIFFVPDT-HSVDLAR 165 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ P+F +N+++A +T ++LDLR WER GLT ACG+ ACAS +A+ T Sbjct: 166 LGPLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLT 225 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V+V + GG L+IEW D + + MTG A +EG Sbjct: 226 GRRVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262 >gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191] gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191] Length = 274 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 8/277 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G+GN ++ID D + + D ++ + AS D I Sbjct: 1 MEFVKYQGLGNDFILIDCVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPS--ASADYKI 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123 RIIN DG+E + CGNG+RC +RF+ +K ++ TFET+ G + + + + VDMG P Sbjct: 59 RIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMGAP 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L IPL S + VSMGNPH + FVE D+ D+A Sbjct: 119 KLTAAQIPLNISDSDGRAVDIPVKLEGGKI--KGTGVSMGNPHFVIFVE-DIKKTDVAKT 175 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + + F + N+ +V + L ++ WERGVG+T ACG+ ACAS+VA +KT Sbjct: 176 GKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTE 235 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 R V++ GG L +EW D+ VFMTG A + + G Sbjct: 236 RLALVELDGGQLTVEWPDDGASVFMTGPATEVFSGVF 272 >gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] Length = 277 Score = 313 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSD--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGNG+RC ++ + +++FT ET+ GI+ + ++V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K +P+ DK+ + V +G PH +VE D+ Sbjct: 119 DMGKPFFNSKDVPMNVDMDKVIDVDIDVNGE----TVTVSSVLLGVPHTEVYVE-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] Length = 279 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 15/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +++D + + A+ D +M++ + A D + Sbjct: 1 MEFTKWQGCGNDFVIVDFLDREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE----NRDGSISV 118 R N DG+E + CGNG+RC R L R++R+ FT ETI G +V + ++ V Sbjct: 59 REFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTAVEV 118 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP+L IP+ + + + + VSMGNPH + FV DD Sbjct: 119 DMGEPVLAGDAIPVRGFGMEPVIAQPITVEDRTYA----MTCVSMGNPHCVIFV-DDAEG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G HP F +N V + +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +RA +++ GG + + WH + H+FMTG A+ + G Sbjct: 234 LCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAG 273 >gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] Length = 277 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +V++ + + A N D ++ + A D +R Sbjct: 1 MKFVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRA--DVQMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 I N DGSE + CGN +RCV ++ R ++R+ ET+ G+ +GS ++VD Sbjct: 59 IFNADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL+ IP+A + R F VSMGNPHA+ FV DD+ D Sbjct: 119 MGEPILEPGRIPVALAEGGTPSGRVEAAGREWAFT----AVSMGNPHAVIFV-DDVEGTD 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + + +F VN+ + +R WERG G T ACG+ ACA+VVA Sbjct: 174 VRGVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALE 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ R V V + GG L IEW ++ V+MTG A + + G++ Sbjct: 234 GRSGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273 >gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] Length = 290 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 18/294 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQD 57 M + + F KM +GN ++ID + + + + D N +I + Sbjct: 1 MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKIC-DRNFGVGGDGVIFVSKS 59 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KEN 111 ++D RI N DGSE + CGNG+RC +++ + ++K ET+ G + K N Sbjct: 60 DNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKNN 119 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 SI VDMG + IP+ + V++GNPH + FV Sbjct: 120 LVESIKVDMGLATFKSEKIPVKTKDKTFINKVCKLNDKKIKL----SAVNVGNPHTVIFV 175 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D++ G ++ HP+F E N++ +V + + + TWERGVG+T ACG+ A A Sbjct: 176 -DEVSRDYAEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGAVA 234 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 S + L K N+ V+V + GG L IE ++ N+ FM G+A +EG L + Sbjct: 235 STIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGILSMP 288 >gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] Length = 285 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 128/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV L + + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 A V + GG L IEW ++HV MTG E EG D+ G Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282 >gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] Length = 300 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 145/297 (48%), Positives = 192/297 (64%), Gaps = 4/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + V+FAKM G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 ADTVEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+NCDG++ Q+CGNG RCVV+ L+S + +FTF+T+ GIL A E+ DG ISVDMG Sbjct: 62 FIDILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGL 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL Sbjct: 122 PRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACA+ V++ +T Sbjct: 182 FGPLLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRT 241 Query: 243 NRAVSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW ++NHV MTG A+ EW G +D +G + + ++ Sbjct: 242 GRKVTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSRDAVAEQG 298 >gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2] Length = 274 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 89/275 (32%), Positives = 141/275 (51%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + ++ I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC RF+ R + S T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + + + + + VV+MGNPHA+ V D+ D+A G + Sbjct: 121 NEIPFVAEQP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 279 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K G+GN +++I R + + S + D ++ + D Sbjct: 3 IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPG-IGNTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI+N DGSE Q CGNG+RC+ R + K+++ T G++ + +G + VD Sbjct: 62 MRILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + + + L VSMGNPH I FVE D Sbjct: 122 MGTPYLFAHEIPTTLGNPNETVINKPLAVAGK----LWLVTCVSMGNPHCITFVE-DASA 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DLA G H MF E +N V + L +R WERG G T ACG+ ACASVVA Sbjct: 177 IDLAVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R +V++ GG L+IEW + +N ++MTG+A+ + G Sbjct: 237 LTENCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGSY 279 >gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] Length = 266 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 139/286 (48%), Gaps = 28/286 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 ++F KM+G GN + ++ + A S D ++LI D Sbjct: 1 MKIEFTKMQGAGNDYIYVNTLIYPLPNPEELAVAWSRPHTGIGSDGLVLIG--SSGKADF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE + CGN RC+ +++ ++ T +T+ GI L ++ + ++ Sbjct: 59 SMRIFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P ++ P+ R VSMGNPH + FV DD+ Sbjct: 119 TVDMGIPA---EIHPVDLG--------------EGYPYREGIAVSMGNPHLVIFV-DDME 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G +L +HP+F + VN+ A+V + + +R WERG G+T ACG+ ACA+ VAS Sbjct: 161 QVDLPRVGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVAS 220 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 H+ + M GG L I W + +FMTG A+K ++G + + Sbjct: 221 AYTHRCPGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266 >gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42] gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42] Length = 301 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS ++ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 R V + + L IEW + ++HV MTG A+ EW G+LD TG W + + + Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDDARE 297 >gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] Length = 276 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+M Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + G + VSMGNPHA+ V D+ + Sbjct: 121 GAPRLVPADIPFQAPEQALSYQVDVDG-----TPVDLAAVSMGNPHAVLRVS-DINTAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276 >gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] Length = 299 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 147/297 (49%), Positives = 192/297 (64%), Gaps = 4/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + V+FAKM G+ NKILV+DMRG D +T A AL+++ T FDQIM IHD + DA Sbjct: 2 ADTVEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+NCDG++ Q+CGNG RCVV+ L+S + SFTF+T+ GIL A E+ DG ISVDMG Sbjct: 62 FIDILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGL 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL Sbjct: 122 PRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACAS V++ +T Sbjct: 182 FGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRT 241 Query: 243 NRAVSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L I+W ++NHV MTG A+ EW G +D TG W + + A Sbjct: 242 GRKVTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWARDAVERGA 298 >gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 286 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 146/285 (51%), Gaps = 11/285 (3%) Query: 2 QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F+KM G+GN ++I+ M +TS+ I LS FDQ++L+ + ++ + Sbjct: 8 KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N +G+EV CGNG RC F L K+++ T L+ +G++ Sbjct: 68 IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P K I + ++ I VN + N +VS+GNPH I +V ++L Sbjct: 128 VDMGVPCFKLKNI---FGENIIENSLHSIKFVNKII--NYDLVSIGNPHCIIYV-NNLKK 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ H +F EG+N++ V S + LR +ERGVG T ACGS ACASV Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V +L G L I W + ++MTG A ++G + Sbjct: 242 QQGLLFNEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDGYFYL 286 >gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] Length = 286 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 144/285 (50%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G GN +VID RG N D + D ++ I + ++ + Sbjct: 4 ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L M K+ ET G+ +AK D Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILECQNIPT--TIEKKINSIPSHEFIEKDFNNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G +L K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AKK + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283 >gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] Length = 284 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 101/276 (36%), Positives = 142/276 (51%), Gaps = 16/276 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G+GN +V+D R H +D I A++ +DQ+ +I A DA Sbjct: 21 SRLPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGA--ADADA 78 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS+ +CGN RC+ L R T RG L A+ + G ++V+MG Sbjct: 79 RLTFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAAERHG-GVVAVNMGA 137 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P DW+ +PLAR D + +P MGNPH FFVE D DLAS Sbjct: 138 PSTDWQGVPLAREVDTLHL----------PIPGDPVATGMGNPHCTFFVE-DAESVDLAS 186 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP+F E N+ +A+V + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 187 FGAEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRGLT 246 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 R V+V + GG L I+W D+ V+M G ++G Sbjct: 247 ERRVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDGV 281 >gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1] Length = 1222 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 26/292 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59 M ++ + FAKM G+GN +V+D + +++I + Sbjct: 948 MAATTIRFAKMHGLGNDFVVVDSVRQSLPPLGSSW-------------LLVIEPPPASGP 994 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRD 113 +D RI N DGSEV CGNG RC+ ++ T L D Sbjct: 995 ELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTPD 1054 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G+I+V+MG P D +PL D +H+ + + VSMGNPH + V D Sbjct: 1055 GAITVNMGCPKFDPAQVPLLAPARA---DVYHLALESGATICCG-AVSMGNPHLVTLV-D 1109 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L H E N+ ++ S+ LR +ERG G T ACGS ACA+V Sbjct: 1110 DVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRACGSGACAAV 1169 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 + V+V + GG L I W + ++MTG A +EG L Sbjct: 1170 AVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEGLLPWPAN 1221 >gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 12/284 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQD 57 + + KM G+GN L +D D++ + A + D ++L+ +D Sbjct: 4 ERRPIRLTKMHGLGNNYLFLDGLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPPRD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG- 114 +RI N DGSE + CGNG+RC+ R + R + F ET G + + + DG Sbjct: 64 PGARFRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLDGH 123 Query: 115 ---SISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMG P L+ +IP+A ++ + + +SMGNPH + F Sbjct: 124 RVTGVTVDMGVPRLERGMIPMAGPAGEQAVEVPLEVEAGGERSVFTVTALSMGNPHCVVF 183 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DDL DL G HP F + VN RV + E + +R WERG G T ACG+ AC Sbjct: 184 V-DDLEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVWERGSGPTLACGTGAC 242 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 A VA +T R V+V++ GG L +EW + HV+MTG A Sbjct: 243 AVAVAGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPAAYI 286 >gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000] gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum GMI1000] Length = 292 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 1 MKLHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDM Sbjct: 61 RYRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDM 120 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G P+ + +P A RD H +N VSMGNPHA+ V DD Sbjct: 121 GAPVFEAARLPFVPDALPTRVEGRDTQHALQINGR-TAWLSTVSMGNPHAVQVV-DDAEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 179 FPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAGI 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W + V MTG A +EG LD+ K Sbjct: 239 RRGLLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] Length = 285 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 128/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV L + + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 V + GG L IEW ++HV MTG E EG D+ G Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282 >gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii L2-63] Length = 1350 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 147/292 (50%), Gaps = 20/292 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + M+ F KM+GIGN + N + A+ D I+L+ + A Sbjct: 1067 EKLMLKFTKMQGIGNDYIYCSTFDQEISNPEALAVRLSDRHFGIGGDGIILVCPSKVA-- 1124 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK----EN 111 DA +++ N DGSE + CGNG+RCV +FL ++ T ET+ GI K Sbjct: 1125 DAKMKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGG 1184 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + + VDMG+ ILD K IP+A DK+ I N+ N VSMGNPH + F+ Sbjct: 1185 KVNRLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFM 1240 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ + D+ + G +F E VN V ++ +R WERG G T ACG+ ACA Sbjct: 1241 -DDIDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACA 1299 Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA+ K + +K+ GG L+I + + V+MTG A+K +EG++++ Sbjct: 1300 VAVAACENGFCKKGEDIKIKLKGGDLIINYT-DETVYMTGNAEKVFEGEVEV 1350 >gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2] Length = 274 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + + I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC RF+ R + + T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP K + + + + VV+MGNPHA+ V D+ D+A G + Sbjct: 121 NEIPFVAEEPKA----LYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001] gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001] Length = 296 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 131/286 (45%), Positives = 167/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG + A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV L + T ET G++ K D S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D +DL Sbjct: 128 GQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG L D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSLSPDLFAG 293 >gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora] gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora] Length = 376 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 145/289 (50%), Gaps = 16/289 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K G+GN L+ID R N + + L D +++I Sbjct: 1 MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLCDRHFGVGADGVIIILSPTLE 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E Q CGNG+RC+ +FL K + ET+ GI+V++ + Sbjct: 61 G-DWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKENDM 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174 I VDMG PIL IP S + +D IG + + + MGNPH + V+ D Sbjct: 120 IYVDMGIPILSPHDIPTRLS---VGQDNIAIGLIETNGITWSVAAAGMGNPHIVIPVK-D 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 D+ FG LL +H F N+ +V L LRTWERGVG+T ACG+ ACA+++ Sbjct: 176 AEDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACAALI 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L +++ + + GG LL+ W +NH+ + G AK ++G L + Sbjct: 236 VAHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVLTPE 284 >gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] Length = 286 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G GN ++ID RG N D + D ++ I + + + Sbjct: 4 ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L M ++ ET G+ +AK D Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILEGQNIPT--TIEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W +++ V MTG AKK + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283 >gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] Length = 268 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 99/275 (36%), Positives = 139/275 (50%), Gaps = 16/275 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID R +T +A++ DQ++L+ A D +R Sbjct: 4 RFTKMHGLGNDFVVIDARVAPVEMTPARAHAIADRRHGIGCDQLILLEPSTSA--DVKMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG EV++CGN RCV + K ET+ G+L DG V +GEP+ Sbjct: 62 IFNADGGEVEACGNATRCVATLI-----GKPAVIETLAGMLRVT-PADGGAEVTLGEPVF 115 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA D D PV L + V++GNPH +FFV + L G Sbjct: 116 DWDHIPLAMPMDTRDM------PVAWDELEHGAAVNVGNPHIVFFVP-EADAVALDQLGP 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E VN+++A + L LR WERGVGLT ACG+ ACA+ VA+ Sbjct: 169 RIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVRSP 228 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I W + M+G A + ++G+ D Sbjct: 229 VTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263 >gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] Length = 317 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 110/275 (40%), Positives = 154/275 (56%), Gaps = 6/275 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+ILV+D+R +++ + A AL+ FDQ M+++ + A AF+RI Sbjct: 40 PFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRI 99 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGSE +CGNG RC+ + R+ + FE+ G+L DG ++VDMG P L Sbjct: 100 LNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLG 159 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLAR + L +VSMGNPHA+FFV D D+ + G Sbjct: 160 WDAIPLARPVADTSAVQIE----GFASLGPASMVSMGNPHAVFFVP-DANAVDVEALGAT 214 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A+V S + + L WERG G T ACG+AACA+ V++ +T R V Sbjct: 215 LEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTGRKV 274 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 V + GG L+I+W + HV MTG E+ G L Sbjct: 275 RVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTLT 309 >gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] Length = 278 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 104/276 (37%), Positives = 147/276 (53%), Gaps = 18/276 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID RG +T AL FDQ+ I D + D + Sbjct: 12 FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIRDG--VTSDVILDF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RCV FL + + T RG+L AK + D +S++MG P LD Sbjct: 70 WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKWSGD-LVSINMGLPQLD 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFL-RNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ +PLAR PV+HL + +P V MGNPH +FFV DD+ D A G Sbjct: 129 WQDVPLARDV-----------PVDHLPIDGDPVAVGMGNPHCVFFV-DDIADVDPAIAGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H +F E N+ A+V S + + +R WERG G+T ACGS ACA+ VA+ T++ Sbjct: 177 PIENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKC 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V +++ GG L ++W D+ V+MTG ++ +L Sbjct: 237 VRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARLTP 271 >gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 277 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] Length = 274 Score = 311 bits (798), Expect = 6e-83, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 16/285 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++S F KM G+GN +++D R ++T I ALS DQ +++ Sbjct: 1 MKTS---FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDG 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D F+R N DG+E +CGN RCV + + +T G+L + DG I+VD Sbjct: 58 ADVFVRFFNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P LDW+ IPL R D + + +P SMGNPHA F+ D D Sbjct: 118 MGPPALDWRDIPLVREVDTLHLPLW----------GDPAAASMGNPHATVFL-DVGDTTD 166 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G + P+F E N+ A+V + + + LR WERG GLT ACGS ACA+VV + Sbjct: 167 PRVRGPAMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVRR 226 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 R V+M GG L + W + + HV M+G A +EG + + T Sbjct: 227 GLVGRTCVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271 >gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] Length = 301 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 148/294 (50%), Positives = 196/294 (66%), Gaps = 5/294 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I I+N DG++ Q+CGNG RCVV+ L + +K FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P V+SMGNPHAIF+V+ D YDLA Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+V S L RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 R V++ + G L IEW + ++HV MTG A+ EW G +D TG + + E Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQE 295 >gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 286 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 16/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K G GN ++ID R + + D N D ++ I + + Sbjct: 4 IIFEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILEPDRNN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V++L + K + ET GI +A+ N +G Sbjct: 64 Y-AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGE 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG+PIL+ K IP D F + + V MGNPH IFF++ D+ Sbjct: 122 ITVKMGKPILETKSIPTK--IDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQ-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + KH +F E N+ +++ + +++++R WERG G T ACG+ ACA VA Sbjct: 179 TKISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + L N + + GG L+I W + + MTG AKK + G +K Sbjct: 239 AYKLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286 >gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 274 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 148/282 (52%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ R + + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEARE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R +K++ ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FV+ L Sbjct: 118 MGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVKS-LDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274 >gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] Length = 277 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri] gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri] Length = 327 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 135/293 (46%), Gaps = 19/293 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDA-SVDAF 63 +FAK +G+GN ++ID R +T++ + D ++ + D Sbjct: 36 EFAKYQGLGNDFVLIDNRASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPGTDEDYS 95 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ N DGSE + CGNG+RC+ RF+ + + T+ G++ + DG ++VDMG Sbjct: 96 MRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRKYKVWTLAGLIQPELRADGQVAVDMG 155 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-------- 173 +P+L+ +P + K ++ VSMGNPH + F Sbjct: 156 KPVLEPANVPTKLAATKDSAAVRCEMDIDGE-KWLVTAVSMGNPHCVTFGRAGDGELGAD 214 Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L+++G H F N V + + + WERG G T ACG+ A Sbjct: 215 GPGLKVEDFALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVWERGAGATLACGTGA 274 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA+VVA + +R V++ GG L I W + + +V MTG A+ + G + + Sbjct: 275 CATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPVFTGVITV 327 >gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens] gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens] Length = 277 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] Length = 286 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G GN +VID RG N D + D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L M K+ ET G+ +AK D Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPTK--IENKINSIPSHEFIQKNFKYIGYAVGMGNPHLIFFVQ-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + + +F E N+ ++ + +++ ++ WERGVG T ACG+ ACA VA Sbjct: 179 LSIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AK+ + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283 >gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] Length = 286 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 142/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC------HDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 ++F K +G GN +VID RG N D + D ++ I + + + Sbjct: 4 INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L M K+ ET G+ +AK D Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIND-E 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPT--TIEKKINSIPSHEFIEKNFNNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AKK + G + Sbjct: 239 AYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283 >gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] Length = 280 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 140/278 (50%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G+GN +V+D R +IT AL FDQ+ LI + + Sbjct: 10 SGLPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTG---V 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+MG Sbjct: 67 HLAFFNADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGA 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW +PLAR D ++ P MGNPH FFV DD+ D+A Sbjct: 127 PQLDWTEVPLAREMDTLEL----------PIEGTPTATGMGNPHCTFFV-DDVMQTDVAK 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H +F + N+ A +T +++ +R WERGVG+T A GS++CA VA+ T Sbjct: 176 LGAELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLT 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V V + GG L I+W ++ V+MTG + + G L Sbjct: 236 GRKVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTLT 272 >gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] Length = 271 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 94/274 (34%), Positives = 145/274 (52%), Gaps = 15/274 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D RG + S A+ FDQ+ ++ + DA D + Sbjct: 9 LPFMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVLSNTDDA--DVQL 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ L + ++ T +T RG+L A + G SV+M P+ Sbjct: 67 TFYNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPL 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLA + D + P++ P MGNPH FFV DD+ L +FG Sbjct: 127 LDWAYVPLAENVDTL------ALPIDGG----PTATGMGNPHCTFFV-DDVEAVALETFG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F E N+ +A++ + + +R WERGVG+T + GS++CA+ VA+ T Sbjct: 176 ARMEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGC 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V + + GG L I+W D+ V+MTG ++G Sbjct: 236 SVQIDLDGGTLHIDWRDDG-VWMTGPTAHVFDGV 268 >gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21] gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21] Length = 289 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 13/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN L ++ +S + D ++ I A D + Sbjct: 1 MKFTKMQGCGNDYLYVNCMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-VAKENRDGSI---SV 118 R+ N D SE CGNG RC+ +F+ + ++ T ET+ GI +A + DG + +V Sbjct: 59 RMFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PI D IP+ + + VSMGNPH + FVE D+ Sbjct: 119 DMGVPITDPSSIPMTWEKSICLDETITVTVDGAPLSLRGTGVSMGNPHFVTFVE-DVATA 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ F E VN+ + + R WERG G T ACG+ ACA + Sbjct: 178 PVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYTAIT 237 Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L K R ++V+ +GG L + + + H+ M G A +EG+++I Sbjct: 238 LGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284 >gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] Length = 269 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 100/279 (35%), Positives = 138/279 (49%), Gaps = 17/279 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61 VDF KM G+GN +V+D R S+A + D DQ++++ D D Sbjct: 1 MRVDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDD--HD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DG EV++CGN R V + T ET G + + + G+ SVDMG Sbjct: 59 FRMRIYNSDGGEVEACGNASRAVAM-----LHGSPATVETAGGAIRLEPAQGGA-SVDMG 112 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP +W IPLA + D + PV L V++GNPH IFFV+ D DLA Sbjct: 113 EPRFEWDAIPLAYAMDTANM------PVGWGELEAGIAVNVGNPHVIFFVQ-DADAVDLA 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + +F E +N+++A S L LR WERG GLT ACG+ ACA+ VA+ Sbjct: 166 ELGPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAISRLH 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W + MTG A + + G + Sbjct: 226 MKSPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264 >gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] Length = 277 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 137/279 (49%), Gaps = 16/279 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G+GN +V+D R +T AL+ FDQ+ LI + + Sbjct: 7 SGLPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALANRHTGVGFDQLALITNTKTG---V 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+MG Sbjct: 64 HLAFFNADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVNMGA 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LDW +PLAR D ++ P MGNPH FFV DD D+A Sbjct: 124 PQLDWAEVPLAREMDTLEL----------PMKGAPTATGMGNPHCTFFV-DDAMQIDVAK 172 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H +F + N+ A +T + + +R WERGVG+T A GS++CA VA+ T Sbjct: 173 LGAEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAARRGLT 232 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V + + GG L I+W D+ V+MTG + + G L Sbjct: 233 GRKVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTLTP 270 >gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] Length = 271 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 13/281 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +V+D + I L+ FDQ++++ VD Sbjct: 1 MLINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 I N +GSEV+ CGNG RC RF+ + T +T I+ N D ++ VDM Sbjct: 61 RYVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + IPL + + I + +S+GNPH + V+ D+ D+ Sbjct: 121 GKPSFNPADIPLLVP---QQSEYYQIEGFDLG------AISIGNPHCVMLVK-DVNTIDV 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + + + + N+ ++ + ++LR +ERG T ACGS ACA+V Sbjct: 171 NTIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG LIE+ H+F++G A+ +EG+++I Sbjct: 231 LLKKNVVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271 >gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] Length = 277 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] Length = 244 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 13/250 (5%) Query: 37 ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--- 93 D ++ Q D +RI N DGSE + CGNG+RC+ FLT Sbjct: 1 MCDRHFGIGADGVIFALPGQK-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISR 59 Query: 94 -RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVN 150 + + T+ GI+ + DG + VDMG P L + IP L K+ IG Sbjct: 60 SKDYYLIHTLAGIIRPQLTDDGQVKVDMGSPRLLAQEIPTTLVPGDSKVINLPLEIGKQ- 118 Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL 210 + VSMGNPH I FVE D+ + G HP+F + N +V + L Sbjct: 119 ---TWHITCVSMGNPHCITFVE-DVASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHL 174 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTG 269 +R WERG G+T ACG+ ACAS+VA + +R ++++ GG L I+W + + ++MTG Sbjct: 175 KMRVWERGAGITLACGTGACASLVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTG 234 Query: 270 EAKKEWEGKL 279 A++ + GK+ Sbjct: 235 PAERVFTGKI 244 >gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] Length = 299 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 153/296 (51%), Gaps = 21/296 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58 M + +M G GN +V+ + T D + AL+ FDQ++ + + A Sbjct: 5 MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALADPATGLGGFDQLIGVEPSETA 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG---- 114 DAF+R+ N DGS V++CGN +RCV L ++ +T+ G A+ Sbjct: 65 --DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGSG 122 Query: 115 ----------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++VDMG P LDW +PL+ D + +GP++ L P VSMGN Sbjct: 123 DPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMGN 181 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH +FF D L + G+L+ HP+F EGVN+ A V + + + LR WERG GLT A Sbjct: 182 PHVVFFT-DRLDDAFVRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGLTLA 240 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CG+ ACA++VAS T+R +V + GG L I+W + + HVFMTG + E G L Sbjct: 241 CGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296 >gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris] gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris] Length = 277 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISIGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] Length = 278 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V++ + T D I+AL+ FDQ++L+ + ++ D RI Sbjct: 6 FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAK----ENRDGSISVD 119 N DGSEV+ CGNG RC+ +++ + +T + ++ +N V Sbjct: 66 FNADGSEVEHCGNGARCLGKYIRDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSELFRVQ 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P P + + +VSMGNPHA+ V DD+ Sbjct: 126 MGVPDFS----PFTTLQTSALAQPLSLAAGHFE----CGIVSMGNPHAVICV-DDVETAA 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G+ L +HP+F + VN+ ++ + E + LR +ERGVG T ACG+ ACA+V Sbjct: 177 VTAIGSALQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGACAAVSVGIAR 236 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L+I+W + +FMTG A + G++ Sbjct: 237 GDLAQTVHVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277 >gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] Length = 284 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCH------DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +F+K +G+GN ++ D R + N + + + + D I+LI + + Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117 ++I N DGSE + CGNG+RC++ FL + + ET G+++ + + +I Sbjct: 64 -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIK 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL IP + + I + + N + SMGNPH I FV +D+ Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G+ L KH F N+ + ++ ++ WERG G T ACG+ ACA +V + Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] Length = 279 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 137/278 (49%), Gaps = 11/278 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V+D ++ S+ I L+ FDQ++++ + VD Sbjct: 6 TPLAFTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDF 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + ++ T GI+ D + VDM Sbjct: 66 NYRIFNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGIIQLNLQGDF-VQVDM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P K IP + + D++ FH V L VV+MGNPHA+ V + + + Sbjct: 125 GVPKTSPKEIPFSAATDEI----FHFLKVGDQTL-TISVVNMGNPHAVLQVSN-VETAPV 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G ++ HP F VN+ V S + LR +ERG G T ACG+ ACA+ VA Sbjct: 179 AQIGPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAG 238 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V V++ GG L I+W V M G A K +EG Sbjct: 239 LLDSPVKVELAGGELQIQWAGIATSVIMEGPATKVYEG 276 >gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] Length = 274 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 17/282 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 V F KM G+GN +VID R + + A DQ++L+ A D Sbjct: 1 MQVRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPS--AVAD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +RI N DGSEV++CGN RCVV L S ET+ G+L + + DG +SV++G Sbjct: 59 ARMRIFNADGSEVEACGNATRCVVSLLGG-----SARIETVAGLLEGR-SADGQVSVELG 112 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP DW IPLA + D PV L P ++GNPH +FFV + L Sbjct: 113 EPRFDWDAIPLAYAMDT------RAMPVAWEELEAPMAANVGNPHVVFFVPET-DAVALD 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + P+F +N+++A V ++ LR WERGVGLT ACG+ ACA+ V++ Sbjct: 166 RLGPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGL 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + V V + GG L I+W + MTG A + + D+ Sbjct: 226 VDSPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLSA 267 >gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 284 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 130/285 (45%), Gaps = 15/285 (5%) Query: 11 MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V++ IT + L+ DQI+L+ + D RI N Sbjct: 1 MHGDGNDFIVLNGIDQDLSGITREQWQVLAHRQFGIGADQILLVENATRPDADFRYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG EV+ CGNG RC VRF+ + E +L K + DG + VDMG PI + Sbjct: 61 ADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFE 120 Query: 127 WKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181 + IP ++ ++ +NH + V +SMGNPHA+ V D+ + Sbjct: 121 HRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSVLSMGNPHAVQVV-GDVDSAPVL 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + + F + VN +V + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 EEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGAGETLACGTGACAAVVSGIRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281 + V V GG L+I W V MTG A +EG+ +I Sbjct: 240 LDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTVFEGETEI 284 >gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2] gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2] Length = 290 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 6/276 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+ILV+D+R + + A AL+ FDQ M+++ + AF+RI Sbjct: 13 PFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRI 72 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGS +CGNG RC+ R FE+ G+L DG + VDMG P D Sbjct: 73 LNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFD 132 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLAR + + L +VSMGNPHA+FFV D D+ G Sbjct: 133 WRDIPLARD----VAETAQVIVPGFEALGPTSLVSMGNPHAVFFVP-DANAVDVEKLGAA 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A +T+ + + L WERG G T ACG+AACA+ V++ +T R+V Sbjct: 188 LEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTGRSV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +V + GG L I W + + HV MTG + E+ G L Sbjct: 248 TVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSP 283 >gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] Length = 290 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 +RI N DGSE ++CGNG+RCV ++ ++ +SF ET+ G++ A+ S+ Sbjct: 62 KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSV 121 Query: 117 SVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMGEP L IP+ +++ + F I + VSMGNPH IF+V DD+ Sbjct: 122 TIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT----AVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ K F EGVN+ V S L R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 S KT R V V + GG L I W + V MTG A+ G + G+ Sbjct: 237 SVLNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQ 288 >gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 246 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 13/252 (5%) Query: 35 INALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK- 93 + D ++ ++ D +RI N DGSE + CGNG+RC+ FL Sbjct: 1 MEMCDRHFGIGADGVIFALPGEN-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGL 59 Query: 94 ---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGP 148 + ++ T+ G++ + DG I VDMG P L IP L + K+ + Sbjct: 60 SRNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGAADGKVINQPLEVEG 119 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208 VSMGNPH I FVE D+ L G HP F + N +V S + Sbjct: 120 Q----TWEVTCVSMGNPHCITFVE-DVAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRD 174 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFM 267 L +R WERG G+T ACG+ ACAS+VA+ +++R +V++ GG L IEW + + ++M Sbjct: 175 YLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYM 234 Query: 268 TGEAKKEWEGKL 279 TG A + + GKL Sbjct: 235 TGPADRVFTGKL 246 >gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] Length = 284 Score = 308 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCH------DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +F+K +G+GN ++ D R + N + + + + D I+LI + + Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117 ++I N DGSE + CGNG+RC++ FL + + ET G+++ + + +I Sbjct: 64 -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIK 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL IP + + I + + N + SMGNPH I FV +D+ Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G+ L KH F N+ + ++ ++ WERG G T ACG+ ACA +V + Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] Length = 277 Score = 308 bits (790), Expect = 5e-82, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V++ + A D ++++ D + Sbjct: 1 MKFTKMTGLGNDFIVLENLENKELEYDVLARKLCDRHFGIGGDGLLIVEPS--GIADIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 RIIN DGSE + CGNG RC +++ + + + ET+ GI++ + + + V Sbjct: 59 RIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG PI LIP+ ++ + I + + +G PH + FV D + Sbjct: 119 YMGNPIFRPDLIPVKTDKNQFIEETIKIDGRAYTVT----SLLIGVPHTVIFV-DSIDEN 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VAS Sbjct: 174 MIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVASAL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T R V V G L IEW +N++++TG+A+K + G +DI Sbjct: 234 TDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276 >gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579] gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579] Length = 288 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M A+ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGESETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 265 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 98/275 (35%), Positives = 138/275 (50%), Gaps = 10/275 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M++F KM G N ++ID R + + DQ+++I + A D FI Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 58 HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 WK IP+ D + P+ L P V++GNPHA+FFV D + L G Sbjct: 118 FHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKIG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + TN Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ + GG LLI + D+N + M G + G + Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265 >gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C] Length = 283 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 128/290 (44%), Positives = 174/290 (60%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I I N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+M Sbjct: 58 NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + K +P+AR + GP L++ +VS+GN HAIFFVE+++ L Sbjct: 118 GRPNFNAKNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + V +LGG L I + +++H+ MTG + E+ G L+ TG + K + Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKKDS 282 >gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13] gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13] Length = 286 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ M DN +I D ++LI A D Sbjct: 19 TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 76 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 77 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 136 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + + V+SMGNPH + FV D++ Sbjct: 137 VTVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 179 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 180 DQVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 239 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 240 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286 >gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 277 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V + + L D ++++ D + Sbjct: 1 MKFTKMNGLGNDFIVFENLDNEEYDYDILARKLCDRHFGIGADGLLIVEPS--GIADIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118 RIIN DGSE + CGNG RC +++ +K+ + ET+ GI++ K++ + V Sbjct: 59 RIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG PI +IP+ + I ++ + +G PH I FV + + Sbjct: 119 HMGSPIFRTDMIPVKTDKKSFIEETIKIDGRTYIVT----SLLVGVPHTIIFV-NSIDKN 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VAS Sbjct: 174 MILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVASAL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V V G L IEW +N++++TG A++ + G++ I Sbjct: 234 TEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276 >gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 111/281 (39%), Positives = 148/281 (52%), Gaps = 9/281 (3%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN I+V+D+RG I++ A+ HFDQ+M++HD AF+RI N Sbjct: 10 TKMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYN 69 Query: 69 CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DGS +CGNG RCV L ET G L + + SVDMG+P Sbjct: 70 IDGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFA 129 Query: 127 WKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 W IPLA + RD + PV+ LR +V+MGNPHA+ FV D DLA Sbjct: 130 WDAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFVADQ-DACDLA 188 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L HP+F + N+SIA V S + + L+ WERG G T ACGSAACA++VA+ Sbjct: 189 LVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGL 248 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 R + + GG L I W ++HV MTG E+ +LD Sbjct: 249 AAREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLDP 289 >gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] Length = 265 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 10/275 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M++F KM G N ++ID R + + DQ+++I + A D FI Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 58 HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 WK IP+ + D + P+ L P V++GNPHA+FFV D + L G Sbjct: 118 FHWKDIPVLHACDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKIG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + TN Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ + GG LLI + D+N + M G + G + Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265 >gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98] Length = 288 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M H A+ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVTLVKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L +P+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLFHNQRYAFT----AVSMGNPHAVIFV-DDVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACASVVA+ Sbjct: 179 APLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYEYK 285 >gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] Length = 282 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 19/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + +D+ + + + A+ + D ++L+ A V Sbjct: 1 MKFTKMHGLGNSYIYVDLFKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPV-- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116 +R+ N DGSE ++CGNG+RCV +F +K ++F ET+ G++ A + +G ++ Sbjct: 59 KMRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +V+MG+P L + +P+ S +K+ + F + VSMGNPH +FFVE D+ Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELT----AVSMGNPHGVFFVE-DI 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ K F E +N+ V S L R WERG G+T ACG+ ACA+VVA Sbjct: 174 NQAPVDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVA 233 Query: 236 SGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S +N +V+V +LGG L IEW ++ V MTG A+ EG + Sbjct: 234 SILNGHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFE 280 >gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] Length = 288 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] Length = 274 Score = 307 bits (788), Expect = 9e-82, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R +K++ ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLT----SLRVGVPHTIVFVES-LDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264] gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264] Length = 288 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M A+ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] Length = 288 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M AI A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ D ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L + IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285 >gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] Length = 288 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M AI A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ D ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L + IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285 >gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822] gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis] Length = 303 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 135/289 (46%), Gaps = 12/289 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M +F KM G GN +V+D +T + AL+ DQI+L+ A D Sbjct: 7 MMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATQADADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++VDM Sbjct: 67 RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDM 126 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVED 173 G D +P S +D ++ V V++ NPHA+ V D Sbjct: 127 GSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVV-D 185 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ ACA+V Sbjct: 186 DVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAV 245 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A + V V GG L ++W+ + MTG A + G++DI Sbjct: 246 AAGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDID 293 >gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] Length = 281 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 131/280 (46%), Gaps = 9/280 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F+KM G GN +V+D+R G + A DQI+ I + A Sbjct: 4 AERLRFSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAV 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 A I N DGS CGNG RCV +L + +SF ++ GI + DG +VD Sbjct: 64 AAYGIWNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P +PLA + + +F VSMGNPHA+ V D+ D Sbjct: 124 MGAPRFAPAQVPLAGFGAEAAEYTLELDGRRVVF----GAVSMGNPHAVIEV-GDIDAVD 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G L F + VN+ A+V + + LR +ERGVG T ACGS ACA+V + Sbjct: 179 VAGTGRALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRR 238 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R +V + GG L I W ++ + M G A +EG+ Sbjct: 239 GRIAREATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGE 278 >gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] Length = 271 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 17/274 (6%) Query: 22 DMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 D R + A++ + D ++ + ++ D +RI N DGSE + CGN Sbjct: 2 DNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKE-GADYSMRIYNSDGSEPEMCGN 60 Query: 80 GMRCVVRFLTSR-------MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP- 131 G+RC+ +F+ KS+ T+ GI+ + DG ++VDMGEPIL + IP Sbjct: 61 GIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPT 120 Query: 132 -LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L + K+ + + N VSMGNPH I FV DD+ LA G H Sbjct: 121 TLGQPDGKVIDETLTVAGENWQVT----CVSMGNPHCITFV-DDVEAVPLADIGPRFEHH 175 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F +N V + L ++ WERG G T ACG+ CA VVA+ K +R +V++ Sbjct: 176 EAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCDRQTTVEL 235 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 GG L IEW +NN V+MTG A + G + + Sbjct: 236 PGGNLEIEWANNNRVYMTGPATLVFSGDVAVDAA 269 >gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1] Length = 283 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 126/286 (44%), Positives = 171/286 (59%), Gaps = 5/286 (1%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G+GN+I+V DMR NIT AI L+ D THFDQIM IH D Sbjct: 1 MKIPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I I N DGS ++CGNG RCV+ +L++ KSF ET G++ + +G I VDMG P Sbjct: 61 IEIWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+ K +P++R + + GP L++ +VS+GN HAIFFV+ ++ L + Sbjct: 121 HLNAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKY 175 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L P+F E N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+ T Sbjct: 176 GPKLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTE 235 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 R + V + GG L I + ++NH+ MTG+A+ E+ G D TG + K Sbjct: 236 RHIDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEKD 281 >gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens] Length = 311 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 133/288 (46%), Gaps = 14/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K +G+GN L++D R ++A + D ++ + ++ D Sbjct: 25 LAFSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGEN-GADFK 83 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGILVAKENRDGSI 116 + I N D SE + CGNG+RC+ R+L + FT T G +V DG I Sbjct: 84 MTIYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLI 143 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEP L +P A + DR VSMGNPH++ FV DD Sbjct: 144 TVDMGEPELAGPKVPCALAPTDGDR-VVDAALEAGGATYAVTAVSMGNPHSVAFV-DDAK 201 Query: 177 HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G + F E VN V +++ WERG G+T ACG+ ACA VA Sbjct: 202 AVDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGVA 261 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 +T+R V + GG L IEW + +N V+MTG A+ + G + Sbjct: 262 GVLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGSAPLP 309 >gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498] Length = 283 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 129/290 (44%), Positives = 173/290 (59%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I I N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+M Sbjct: 58 NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D K +P+AR + GP L++ +VS+GN HA FF E+++ H L Sbjct: 118 GRPNFDAKNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + V +LGG L I + +++HV MTG + E+ G L+ TG + K + Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKKDS 282 >gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134] gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus] gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134] Length = 288 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M A+ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 281 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 98/279 (35%), Positives = 140/279 (50%), Gaps = 10/279 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + S +++F KM G N ++ID R + + DQ+++I + A Sbjct: 13 LFSHVINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA-- 69 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D FI I N DGS+V+ CGN RCV L++ K + T E IL I V+M Sbjct: 70 DCFIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNM 129 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P WK IP+ D + P+ L P V++GNPHA+FFV D + L Sbjct: 130 GYPKFHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPL 182 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + Sbjct: 183 TKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRN 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 TN ++ + GG LLI + D+N + M G + G + Sbjct: 243 YTNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 281 >gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3] gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3] Length = 269 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ M DN +I D ++LI A D Sbjct: 2 TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 60 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG P + + + V+SMGNPH + FV D++ Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 163 DQADLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS] Length = 303 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 94/289 (32%), Positives = 135/289 (46%), Gaps = 12/289 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M +F KM G GN +V+D +T + AL+ DQI+L+ A D Sbjct: 7 MMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++VDM Sbjct: 67 RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDM 126 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVED 173 G D +P S +D ++ V V++ NPHA+ V D Sbjct: 127 GSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVV-D 185 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ ACA+V Sbjct: 186 DVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAV 245 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A + V V GG L ++W+ + MTG A + G++DI Sbjct: 246 AAGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDID 293 >gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] Length = 269 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 134/287 (46%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ M DN +I D ++LI A D Sbjct: 2 TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 60 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG P + + + V+SMGNPH + FV D++ Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 163 DHVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803] gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803] Length = 288 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L + IP+ + R+ F + F VSMGNPHA+ FVE Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE- 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13] Length = 284 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 150/285 (52%), Gaps = 19/285 (6%) Query: 7 DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++M + + +++ A+ + D ++LI + A V Sbjct: 5 QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEVAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117 +RI N DGSE ++CGNG+RCV ++ ++RK+F ET+ G++ A+ + S++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAGKVTSVT 122 Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L K IP L + + + F + + VSMGNPH + F DD+ Sbjct: 123 VDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEIT----TVSMGNPH-VIFYLDDIK 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K P F EGVN+ V + + L R WERG G+T ACG+ ACA+VVAS Sbjct: 178 DAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGACAAVVAS 237 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +KT N+ V + GG L I W + V M G A+ G Sbjct: 238 VLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAEVICTGSF 282 >gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 276 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +V+D +T+ + L+ DQI+L+ +D Sbjct: 1 MKMPFVKMHGLGNDFVVLDGVRQSVVLTAPQLRHLADRHFGIGCDQILLVEPASQPGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC VRF+ + ++ ET+ G++ + DG+++VDM Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+ IP + + + + + + V MGNPHA+ V D+ + Sbjct: 121 GVPVFASAQIPFVAATEDLVQ-TLRVADEDIAIT----AVGMGNPHAVQVVA-DVDLAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 175 ERQGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAVAGIARG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W+ + V MTG A ++G++++ Sbjct: 235 LLDSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276 >gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] Length = 269 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ M DN +I D ++LI A D Sbjct: 2 TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 60 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+VDMG P + + + V+SMGNPH + FV D++ Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DLAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 163 DQVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse] gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse] Length = 283 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 130/283 (45%), Positives = 169/283 (59%), Gaps = 5/283 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G+GN+I+V DMR +T AI AL+ D THFDQIM IH D I I Sbjct: 4 PFRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCV+ +LT +SF ET GI+ K D ISVDMG P + Sbjct: 64 WNADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + + GP L++ +VS+GN HAIFFVED++ L +G Sbjct: 124 AKEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + GG L I + ++NH+ MTG K E+ G L+ TG + K Sbjct: 239 DVNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKKD 281 >gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 288 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FVE Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE- 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 271 Score = 305 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 13/281 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 +++F KM G+GN +++D ++ I L+ FDQ++L+ +VD Sbjct: 1 MLINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 I N DG EV+ CGNG RC F++ + ET GI+ N D ++ VDM Sbjct: 61 RYVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + I L + + VS+GNPH + VE D+ D+ Sbjct: 121 GKPSFNPADILLLVPQQSTYYQ---------IEGFDLGAVSIGNPHCVMLVE-DVNTVDV 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +S + + + N+ ++ + ++LR +ERG G T ACGS ACA+VV Sbjct: 171 SSIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVVYGVEQG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG LIE+ HVF++G + +EGK++I Sbjct: 231 LLKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271 >gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273] gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273] Length = 288 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 23/293 (7%) Query: 4 SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S F KM G+GN + ++M R + ++ ++ + + D ++LI A Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNI--NTGIGADGMILICPSDVA 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGS 115 V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ D Sbjct: 60 PV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDK 117 Query: 116 IS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++ +DMG P L + IP+ D R+ F + F VSMGNPHA+ FV Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGDTPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD+ L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232 Query: 232 SVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +VVA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] Length = 288 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE ++CGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LVKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] Length = 288 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M A+ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ V D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066] gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055] gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North America USA6153] gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B] gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum] gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94] gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] Length = 288 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] Length = 288 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVDQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 291 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 140/285 (49%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ +GN ++I+ + A+ A D ++++ Q A D +R Sbjct: 1 MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR---DGSISVDM 120 I N DGSE ++CGNG+RC+V+++ ++ T ET G+ A + D I M Sbjct: 59 IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118 Query: 121 GEPILDWKLIPLARSFDK-------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GEPIL+ IP+ K + H VSMGNPHAI F+E Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTL----AFVSMGNPHAIEFIES 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + L G + KH MF N IARV +++R WERGVG T ACGS ACA V Sbjct: 175 DLEAFPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVV 234 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 VAS + T V +K+ GG L EW + V++TG A+ + G Sbjct: 235 VASWIMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQVVFSGN 279 >gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] Length = 281 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 105/283 (37%), Positives = 157/283 (55%), Gaps = 9/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + +M G GN ++D RG ++++A+ ++ N DQ++ + + D F+R Sbjct: 1 MKYYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSAN--ADQVVSLENSMRG--DIFMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SISVDMGEP 123 I N GSEV +CGN RCV + R + ET G+L+A + +G ISVDMG P Sbjct: 57 IWNNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +L W+ IPLA D D IGP++ +L+ P V+MGNPH +FFV D+L D+ Sbjct: 117 LLKWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFV-DELDAVDVVGI 174 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H MF E N+ A+V + + LR WER GLT ACG+ ACA+VVA N Sbjct: 175 GPLIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLN 234 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 R+ +V + GG L I+W + ++HV MTG + E + ++ Sbjct: 235 RSCTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEISAPASA 277 >gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] Length = 273 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R + + D I+++ + A + Sbjct: 1 MKFIKMQGTGNDFVVIDDRDNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117 + IIN DGS CGNG+RC +++ +K ET GI A N + ++ Sbjct: 59 MIIINSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG P D K IP+ S D++ + I + + MG PH + F DL Sbjct: 119 IDMGTPSFDPKKIPV-NSCDEVVKKELKINEKTYSIT----SMFMGVPHTVIF--GDLEK 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + K+ +F EG N++ V + + + ++TWERG G T ACG+ CA VAS Sbjct: 172 YDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T V + GG L IE +N VFMTG A+ ++G+ DI Sbjct: 231 KLGFTEGKVKAHVPGGILFIEV-KDNKVFMTGPAEVSFKGEYDI 273 >gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] Length = 277 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 130/279 (46%), Gaps = 5/279 (1%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN V+D+R +TS+ I A S FDQ++++ VD Sbjct: 1 MTIRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RCV RF + F ET RG+L D + V MG Sbjct: 61 KYRIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGI 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D + P ++ +++GNPHA+ +V + Sbjct: 121 PTFKPSEIPFVAD-DAALNYNLPLYPDQASQIK-VGALAIGNPHAVVWVSST-AAAPVEE 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L HP F VN+ A ++LR +ERGVG T ACG+ ACA+ + Sbjct: 178 LGPILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGL 237 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 VSV + GG L I+W V MTG A ++G+L Sbjct: 238 VSPVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGELS 276 >gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 288 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 148/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M +++ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] Length = 279 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN + I+ + DAI + D I+LI A D Sbjct: 3 LSFTKMHGTGNDYIYINCFKEKFTV-EDAIKYSPILSHRHYSIGADGIILIMPSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGS 115 +R+ N DGSE + CGNG+RCV ++ R K ET+RGIL A K+ + Sbjct: 60 VQMRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEVDT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + M PIL+ IP + + + F VSMGNPHA+ FV +DL Sbjct: 120 VEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYFT----AVSMGNPHAVIFV-NDL 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ D++S G+ + + +F N+ + + + RTWERG G T ACG+ A A VA Sbjct: 175 HNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVCVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T+ + +LGG L++ + +N++VFM GEA+ +EG + + Sbjct: 235 GFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279 >gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] Length = 268 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 28/287 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G+GN + ++ N +I D ++LI D A D Sbjct: 1 MKIEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE + CGN RC+ ++L + +T+ GI L KE + S+ Sbjct: 59 SMRIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P D + + R VSMGNPH + FV D + Sbjct: 119 RVDMGIP-----------------ADIHWVDLGDAYPFRKGVAVSMGNPHLVIFV-DKME 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 LA G +L +HP+F + VN+ A+V + E++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 161 EVALAEVGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAA 220 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + +V M GG L I+W + H++MTG A K ++G +++K Sbjct: 221 AFSGQCGSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELK 267 >gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555] gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016] gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555] gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 274 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +VID R A+ + D ++++ + AS+ Sbjct: 1 MKFTKMHGTGNDFIVIDDRENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ +K K ET GI A K + I+ Sbjct: 59 MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG P + +P+ +++ I N++ + MG PH + F L Sbjct: 119 IDMGMPSFAPRKVPVEFK-EEVIEKEVKIKNKNYIIT----TLFMGVPHTVIF--GKLED 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+A G + K+P+F++G N++ + + + + ++TWERG G T ACG+ +CA VVA+ Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T + V V + GG LL+E D+N VFMTG A ++G+ DI Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274 >gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] Length = 285 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 137/285 (48%), Gaps = 7/285 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN +VID N+T L+ DQI+++ A +D Sbjct: 1 MKIKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG R VRF+T + + T+ G++V + DGSI+VDM Sbjct: 61 RYRIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDM 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ +P D + + P+ + V+SMGNPHA+ V D + Sbjct: 121 GAPVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMSVLSMGNPHAVQIV-DAVETA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 LA G + H F VN ++ ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 180 GLALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 + + V V+ GG L I W +HV ++G A +EG++ + Sbjct: 240 RGQLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284 >gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] Length = 261 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 126/266 (47%), Gaps = 10/266 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + D I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + S + T +G +V D ++V+MG P + IP Sbjct: 61 GNGARCFARFVRMKGLTNKYSVSVSTKKGKMVLSIEEDDQVTVNMGVPEFEPSKIP---- 116 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F ++ +I L VSMGNPH V DD+ D+ + G LL H F E Sbjct: 117 FKAKQTEKTYILRTEDKTLFCG-AVSMGNPHV-VTVVDDVATADVDTLGPLLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN +V + ++LR +ERG G T ACGS AC +V + V V + GG L Sbjct: 175 RVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSL 234 Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLD 280 I+W ++MTG A ++G+L Sbjct: 235 NIQWQGVGKPLYMTGPATHVFDGQLS 260 >gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 274 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R +K++ ET+ G+++ + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MSNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLT----SLRVGVPHTIVFVES-LDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup] gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup] Length = 283 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 127/283 (44%), Positives = 166/283 (58%), Gaps = 5/283 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+VIDMR +T AI ALS D HFDQIM IH D I I Sbjct: 4 PFSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCVV +L + F ET GI+ D ISVDMG P + Sbjct: 64 WNADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G Sbjct: 124 AKEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + G L I + +++HV MTG K ++ G L TG + K Sbjct: 239 DVNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKKD 281 >gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3] Length = 284 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 132/290 (45%), Positives = 174/290 (60%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI L+ + THFDQIM IH + + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D I I N DGS+ ++CGNG RCVV +LT+ +SF ET GI+ K +G ISV+M Sbjct: 58 DFRIEIWNADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D K +P+A + GP L++ ++S+GN HAIFFVE+++ H L Sbjct: 118 GCPNFDAKNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERGVGLT ACGSAACAS VA+ Sbjct: 173 EKYGPKLEHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + + GG L I + +NNH+ MTG + E+ G L+ TG + K Sbjct: 233 LTERRIDINSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKKDA 282 >gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] Length = 289 Score = 304 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 19/290 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 + M+ F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 2 TRMILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGS 115 D RI N DGSE + CGNG+RC +F+ ++++ ET+ GI + DG+ Sbjct: 61 EGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGA 120 Query: 116 I---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + VDMG IP+ + + + +S+GNPHAI FV Sbjct: 121 VVSSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLT----ALSVGNPHAIIFV- 175 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD DL G + HP+F E +N+ V S + + TWERG G T ACG+ A AS Sbjct: 176 DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATAS 235 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 V+A L K + +V V + GG L I+ + + +M G+A ++G L Sbjct: 236 VIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285 >gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 279 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + A D +M + A D + Sbjct: 1 MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---V 118 R N DG+E + CGNG+RC R+L + + FT ET+ G +V + +DG++S V Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L+ IP+A +++ + + VSMGNPH + FV DD Sbjct: 119 DMGIPVLEGARIPVAGFGTERVVAQPITVAGKEYA----MTCVSMGNPHCVVFV-DDADG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLKQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +R ++++ GG + + W ++ H+ MTG A++ + G+ Sbjct: 234 LNDVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGE 274 >gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis Length = 308 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M A+ A + + D ++LI A V + Sbjct: 26 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 83 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 84 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 143 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 144 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 198 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 199 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 258 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 259 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305 >gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1] gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1] Length = 288 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M A+ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W] gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102] gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W] gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102] Length = 288 Score = 304 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] Length = 286 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 102/286 (35%), Positives = 148/286 (51%), Gaps = 19/286 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 + F KM G+GN + ID+ + + D +S D ++LIH DA Sbjct: 1 MQIPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDG 114 D +RI N DGSE +SCGNG+RC ++ + K F +T I+ A+ N+ Sbjct: 59 DVGMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVN 118 Query: 115 SISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +++DMGEPIL IP+ + D K+ + F + + VSMGNPH +FFV D Sbjct: 119 QVTIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGE----TQYITAVSMGNPHGVFFV-D 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G + K F E +N+ V S L+ R WERG G+T ACG+ ACA+V Sbjct: 174 DIEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAV 233 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VA+ K + + V + GG L IEW ++NHV+MTG A+ G Sbjct: 234 VAATLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAEVIATG 279 >gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] Length = 282 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 12/278 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M +GN +VI+ + + D ++ I + D RI N Sbjct: 1 MHALGNDYIVINEFDGEKVKNKEEFSKKVCRRRFSIGADGVIFIQKPSSNNYDVKFRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGI----LVAKENRDGSISVDMGEP 123 DGSE + CGNG+RC +++ R+ K+ ET G+ L +++R I V MG+P Sbjct: 61 SDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGLRVCELEVEDDRVKKIRVYMGKP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY--DLA 181 K IP+ ++ +R + +L N VS+GNPHAI FV DDL L Sbjct: 121 SFKCKDIPVKSEKEEFINERAELKN-PYLKEVNITAVSVGNPHAIIFV-DDLEKIREHLD 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + P+F E +N+ +V + + + + TWERGVG T ACG+ A AS V S L Sbjct: 179 VIGSEIENLPIFPERINVHFVKVLNDKEIKILTWERGVGYTMACGTGATASAVVSNRLGF 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T V V + GG L IE D+ +M G+A ++G + Sbjct: 239 TKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVMVYDGVM 275 >gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] Length = 267 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 10/273 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+DF KM G N ++ID R N D + DQI++I + A D F+ Sbjct: 1 MIDFIKMHGTLNDFVIIDCRSKFYN-NIDYKAIANRKTGIGCDQIIVITKSEKA--DCFM 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ ++ + T E IL + ++ V+MG Sbjct: 58 HIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIAK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IP+++ D + P+ L +P +++GNPHAIFFV + + L G Sbjct: 118 FHWTDIPISQECDTLHL------PITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKLG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F + N+SIA + S + LR WERG G TA+CGS ACA++VA+ T+ Sbjct: 171 PKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTDT 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ + GG LLI + ++N + M G + G Sbjct: 231 TATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263 >gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] Length = 279 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + A D +M + A D + Sbjct: 1 MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSIS---V 118 R N DG+E + CGNG+RC R+L + + FT ET+ G +V +DG++S V Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L+ IP+A + + + + VSMGNPH + FV DD Sbjct: 119 DMGIPVLEGARIPVAGFGTEHVVAQPIMVAGKEYA----MTCVSMGNPHCVVFV-DDADG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + +R ++++ GG + + W ++ H+ MTG A++ + G+ Sbjct: 234 LNNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGE 274 >gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] Length = 293 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 129/291 (44%), Gaps = 22/291 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN + +D +S D ++LI A D F+ + N Sbjct: 1 MHGAGNDYVYVDCTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEMYNS 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG------SISVDMG 121 DGS Q CGNG+RCV +++ +K +T+ GI + N D S+ V+MG Sbjct: 59 DGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRVNMG 118 Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL-----RNPFVVSMGNPHAIFFVED 173 PIL IP+ + + + +D V+ VSMGNPH + F++D Sbjct: 119 SPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVFMDD 178 Query: 174 DLYHYD--LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D + + G L H +F E N +V +L +R WERG G T ACG+ CA Sbjct: 179 DFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTGCCA 238 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 S+VA+ + +LGG L I W N V+M G A ++G +DI Sbjct: 239 SLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDI 289 >gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 307 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 9/286 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN +V+D N+T+ + AL+ DQ++L+ VD Sbjct: 1 MKLKFTKMHGAGNDFVVLDGYTQPVNLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDM Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P+ D +L+P A + R+ + P++ + R VVSMGNPHA+ V DD + Sbjct: 121 GTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEAF 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+ A Sbjct: 180 PVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIR 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + M G A +EG++++ Sbjct: 240 RGLLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIEL 285 >gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 288 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINIGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4] gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4] Length = 279 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 13/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +V+ R + A D ++ I ++A D +R Sbjct: 1 MHFVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSEEA--DITMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVD 119 I N DGSE + CGN +RCV + + + T GI L K+ + S +VD Sbjct: 59 IFNADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL+ IP+ K+ + + +S GNPH + FV + Sbjct: 119 MGEPILERSAIPMQGPPGKVVNEPLIF---EDGLVLRVTALSFGNPHCVLFVP-AVEEAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L HP F N+ V + +R WERGVG T ACGS ACA+ VAS Sbjct: 175 VEELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILN 234 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 T R + V + GG L I W ++ HV++ G A ++G+ Sbjct: 235 GYTAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGE 274 >gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] Length = 288 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 147/291 (50%), Gaps = 19/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60 S F KM G+GN + ++M A+ A + + D ++LI A V Sbjct: 2 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ Sbjct: 62 --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119 Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +DMG P L IP+ + R+ F + F VSMGNPHA+ V D Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-D 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+V Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234 Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA+ K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYEYK 285 >gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 274 Score = 303 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + + A D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALE-NVDYSELAAKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R +K++ ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVES-LDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2] gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2] Length = 283 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 15/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KMEG+GN +++D R + + +I + D Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETADVG 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116 +I N DGSE + CGNGMRC + + + + ++ FT ET+ G ++ + + +I Sbjct: 63 FKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVEAI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ IP + + ++ + + VSMGNPHA+ FV DD+ Sbjct: 123 CVDMGEPILEPDRIPFKCNRQRAVNEQIQVKGE----TVSITAVSMGNPHAVIFV-DDVK 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G + H +F N+ V + + L +R WERG G T ACG+ A A +VA+ Sbjct: 178 KIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLVAA 237 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V + GG L I W +NH+F TG A + G++ I Sbjct: 238 SLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283 >gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820] gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820] Length = 288 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 285 >gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 286 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 19/288 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 M+ F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 1 MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SGEG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSI- 116 D RI N DGSE + CGNG+RC +F+ ++++ ET+ GI + DG++ Sbjct: 60 DIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGAVV 119 Query: 117 --SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 VDMG IP+ + + + +S+GNPHAI FV DD Sbjct: 120 SSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLT----ALSVGNPHAIIFV-DD 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL G + HP+F E +N+ V S + + TWERG G T ACG+ A ASV+ Sbjct: 175 AEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVI 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 A L K + +V V + GG L I+ + + +M G+A ++G L Sbjct: 235 AGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282 >gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI] gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str. CI] Length = 288 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] Length = 269 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 130/287 (45%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ + + I D ++LI A D Sbjct: 2 TKSIRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 60 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + + V+SMGNPH + FV D++ Sbjct: 120 VTVDMGMPAV----------------GEMALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 LAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 163 DQVGLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 279 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V++ + I L D ++L+ + + AF+ Sbjct: 1 MKFLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR----DGSISV 118 N DG+ Q CGNGMRC+ +++T R +K+ FT + G + + + + +I V Sbjct: 59 DYYNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG + + IP+ +++ F V + + SMGNPH + D Sbjct: 119 DMGNVVFSAQKIPVISKKEEVIGAHFDWDGVTYSY----GCASMGNPHMVVLT-GDFDQT 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G KH MF E N+S A V + + TWERG G T ACG+ CA+V Sbjct: 174 PIEAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHR 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L K + AV ++ GG L +E D +HV+MTG A+ +EG +D++ Sbjct: 234 LGKVDTAVEAQLSGGILSVE-LDGSHVWMTGPAQTVYEGSVDVEA 277 >gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 269 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 28/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ ++ S AI D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DG+ CGNG+RCV ++ + + + ET GI + + + +++V Sbjct: 59 DMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDL 175 DMG+P+ +L + I ++ F+ +SMGNPHA+ F E+ + Sbjct: 119 DMGKPVQTSEL-----------FEELEIKGKSYRFIG----ISMGNPHAVVFEDEFEEPI 163 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G H F + N RV + +R WERG G T ACG+ ACA VA Sbjct: 164 ETLDLEKIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAVA 223 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 + T+ V V++LGG L I W + + V+MTG A + + G+ Sbjct: 224 AILAGCTDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGEYQ 269 >gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] Length = 293 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 111/288 (38%), Positives = 158/288 (54%), Gaps = 8/288 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M F KM G+GN +V+D+R +T A++ + DQ++ I + Sbjct: 1 MTGMTHHFLKMNGLGNDFVVLDLRREPFVLTDAIARAIADREKGIGCDQLITIEPARQGG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D F+ I N DG V++CGN RC+ + + + + T ET+ G VA I+VD Sbjct: 61 -DVFMGIRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P LDW IPL+ F IGP+ + +P VV++GNPHA+FFVE D+ D Sbjct: 120 MGAPRLDWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAID 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G +L HP+F E N+S+A+V S + +RTWERG GLT ACG+AACA+ VA+ Sbjct: 179 LERSGPMLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRR 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282 KT R ++V + GG L +EW + HV MTG ++EG LD + Sbjct: 239 RKTERKITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286 >gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 134/297 (45%), Gaps = 25/297 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--VDAF 63 + F KM G+GN ++ M+ N A D +++ ++++ D Sbjct: 1 MKFEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG------- 114 +RI N DGSE + CGN +RC+ ++L K T GI + + Sbjct: 59 MRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEIN 118 Query: 115 ----------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+M +P+L IPLA D+ D R + + VS G Sbjct: 119 LSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYG-IYYLTEVSTGP 177 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV++ L L G ++ KH +F G N+ +V S L ++ WERG G T A Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 CG+ ACA VVA+ N V++ GG L I W +N ++M G A+ + G+L+ Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294 >gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] Length = 288 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 109/272 (40%), Positives = 154/272 (56%), Gaps = 3/272 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN+ILV+D+RG +T+ A++ FDQ+M +H+ + A +AF+RI N D Sbjct: 13 MNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNND 72 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS +CGNG RCV L + + + ET G + + + SVDMG P LDW+ I Sbjct: 73 GSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRAI 132 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA + D R + P V+MGNPHA+FFVED L + G + H Sbjct: 133 PLAG--EGADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVEDP-AAIALEALGPPIETH 189 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E VN+S A V + + LR WERG G+T ACGSAACA++VA+ + R V++ Sbjct: 190 PLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVRL 249 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 GG L I+W ++HV MTG + E+ +LD + Sbjct: 250 PGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281 >gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] Length = 292 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 128/285 (44%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN +VID + + I A+ D ++L+ + D + Sbjct: 1 MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMCRPHFGIGADGLILVEPSES--CDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR----DGSIS 117 N DGS + CGNG+RC+ ++ K F ET G + + +I Sbjct: 59 NYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVSTIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG + IP+ + ++ + SMGNPH VE+ + Sbjct: 119 VSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTY----GCASMGNPHMAVLVEN-VDS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G KHPMF N+S A V S +S+ + TWERGVG T ACG+ CA+V Sbjct: 174 FPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACGTGTCATVAVLH 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V + GG L+IE D + VFMTG AK + G +++ Sbjct: 234 RMGLVGNKVHACLSGGDLVIE-LDGSAVFMTGPAKVVFRGTYEMQ 277 >gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] Length = 279 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 16/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN ++++ + A D ++L+ + A + Sbjct: 1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQARL--R 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS----IS 117 +RI N DGSE + CGNG+RC R++ + + ET+ GI+ + +G + Sbjct: 59 MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ + IP+A + + + + VSMGNPH +FFVE D+ Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIEVNGE----TWRGTCVSMGNPHCVFFVE-DVTG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP+F N+ +V + E L +R WERG G T ACG+ ACA+ VA Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 ++NR V+V + G L IEW +NHV+MTG A + + G + Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279 >gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4] Length = 264 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 26/282 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS CGNG+RCV ++ + + ET GI + K+ + G ++V Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P ++ + + + F VSMGNPHA+ F+ D + Sbjct: 119 DMGRPEQTSEI-----------GEPITVAGKEYRFTG----VSMGNPHAVVFM-DGIKDM 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G H F + N + +++R WERG G T ACG+ ACA+ VA Sbjct: 163 EIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVACIL 222 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 T+ V V +LGG LLI W + + VFMTG A + + G++ Sbjct: 223 NGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264 >gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] Length = 279 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM GIGN + +D + DA+ + D I+LI A D Sbjct: 3 LNFTKMHGIGNDYIYVDCFKEKFTV-EDAMKYSPILSHRHYSIGADGIILIMPSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK----ENRDGS 115 +R+ N DGSE + CGNG+RCV ++ + K ET+RGIL AK +N S Sbjct: 60 VQMRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNEADS 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + ++M PIL+ IP + + + + F VSMGNPH + FV DD+ Sbjct: 120 VEINMDSPILEGLKIPTTIDKNVIIDEPITFNGKTYYFT----CVSMGNPHTVIFV-DDV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + D+A GN + + +F N+ V + + RTWERG G T ACG+ A A VA Sbjct: 175 SNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASAVCVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T+ + +LGG L++ + +NN VFM GEA+ +EG + + Sbjct: 235 GFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279 >gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] Length = 289 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 142/275 (51%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +++D RG T A+ FDQ+ I D ++ D + Sbjct: 21 LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGEN--CDIAL 78 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV + + T T RG+L + + ++ V+MG P+ Sbjct: 79 DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRGEMRGE-AVWVNMGPPV 137 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D + +P V MGNPHA+FFVE D+ D+A+ G Sbjct: 138 LDWAQVPLAREVDLLHL----------PIAGDPCGVGMGNPHAVFFVE-DIDAVDVAARG 186 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + P++ E N+ +V S + + +R WERG G+T ACGS ACA VA+ T R Sbjct: 187 AEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTGR 246 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V +++ GG L ++W D+ V+MTG + +EG+L Sbjct: 247 HVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280 >gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354] Length = 269 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 17/281 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G+GN +++D R + + I AL+ FDQ++++ +A D Sbjct: 1 MRLPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DG EV++CGN R V + + + T G L + + + MG Sbjct: 59 LAMRIHNADGGEVEACGNATRAVAV-----LHGQPASIATAGGTLRVRPGENMA-EAAMG 112 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 W+ IPLA + D + P+ L P V++GNPH +FFV DD L Sbjct: 113 RARFHWQDIPLAYAMDTREM------PLGWDMLERPSAVNVGNPHIVFFV-DDARAVPLE 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+ + Sbjct: 166 TLGPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGL 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V + GG L I + + M G A + + G ++ Sbjct: 226 VDAEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFELD 266 >gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7] Length = 269 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 132/287 (45%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ M DN +I D ++LI A D Sbjct: 2 TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115 + I N DGSE CGN RC+ +++ ++ T ET+ GI L + Sbjct: 60 FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + + + V+SMGNPH + FV D++ Sbjct: 120 VTVDMGMPAV----------------GEMALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 LAS G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA Sbjct: 163 DQVGLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 KT R V M GG L IEW + + VFMTG A +EG + + Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] Length = 302 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 20/293 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +VI D + + + + D ++ + + D Sbjct: 8 LEFTKMHGLGNDYIVINEFDGIKIKEEDKEEFSRKICKRGFSIGADGVIYVQKPTNDKYD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +++ R+ K+ ET G+ V++ + + I Sbjct: 68 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMDIENDIVKKI 127 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV----NHLFLRNPFVVSMGNPHAIFFVE 172 V MG P K IP+ K + D F + + + VV++GNPHA+ FVE Sbjct: 128 KVYMGAPTFQLKDIPMKVEG-KSENDEFLNEAIKLNNDLIDEIKLSVVNVGNPHAVIFVE 186 Query: 173 D-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D D +L + G + H +F E +N+ V + + + TWERG G T ACG+ Sbjct: 187 DNNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERGAGYTTACGT 246 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +SV+ + L KT V + GG L IE ++ V+M G+A ++GKL Sbjct: 247 GTTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGKLQ 298 >gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] Length = 274 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + + A+ D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALE-NVDYSELAVKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R +K++ T ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVES-LDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K +FS+G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3] gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3] Length = 288 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R + V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] Length = 276 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K G+GN ++++ + A + D ++ + + Sbjct: 1 MQFSKWHGLGNDFVIVEPEKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPL--GGSAFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+E + CGN RCV ++ F T GI+ K +GS+ VDMGE Sbjct: 59 RIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IP+A + I F + VSMGNPHA+ FV D+ +L Sbjct: 119 PHLLRGEIPVAGD-PASGAENLAIELPGRQF--SAVGVSMGNPHAVIFVP-DINAVELEK 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G + H +F N+ V S + +R WERG G+T ACG+ +CA+ VA +T Sbjct: 175 WGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVTGRT 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 R ++V + GG L I++ ++NHV+MTG A + + G+ Sbjct: 235 ARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQYT 273 >gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] Length = 282 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 20/289 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G+GN + I++ H + + A+ + D ++LI ++ Sbjct: 1 MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTSCAI-- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115 +RI N DGSE ++CGNG+RCV ++ + K+F+ ET+ G + A D G+ Sbjct: 59 KMRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118 Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++++MG+P L + IP+ DK + ++ VSMGNPHA+ FVE Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDKPVVGEKLEANGE----TVQVTAVSMGNPHAVMFVEQ- 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + S G ++ KH F + VN V S L R WERG G+T ACG+ ACA+VV Sbjct: 174 IEKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGACAAVV 233 Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AS K V+V +LGG L I W +N V M G A+ G + + Sbjct: 234 ASVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAEYICTGNVFL 282 >gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] Length = 282 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 125/283 (44%), Positives = 168/283 (59%), Gaps = 6/283 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GNKI+V D+R NIT AI AL+++ THFDQIM IH D I I Sbjct: 4 PFSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQD-ADFRIEI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCV+ +L + +F ET GI+ K DG ISVDMG P L+ Sbjct: 63 WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ +VS+GN HAIFF+E ++ + L +G Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + G L I + D+ H+ MTG + E+ G + TG + K Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKKD 280 >gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] Length = 288 Score = 301 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 123/276 (44%), Positives = 165/276 (59%), Gaps = 5/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R D + A A + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVLDLRD--DPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126 N DGSE +CGNGMRCV + + S + FE+ G+L I +VDMG P Sbjct: 67 NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VSMGNPHAIF+V DD++ +DL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWV-DDVHAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + +RTWERGVGLT ACGSAACA+ VA+ L + R V Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + GG L I+W + ++HV MTG A E+EG LD Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLDP 281 >gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] Length = 272 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 28/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + ++ + + D ++LI A D Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 +RI N DGSE + CGN RC+ ++L + + T +T+ GI L ++ + + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P D K P+ + K VSMGNPH + FVE D+ Sbjct: 120 VTVDMGRPA-DMKEQPIEANGQKF----------------TGTTVSMGNPHLVIFVE-DI 161 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 162 KDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVA 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + K+ R + M GG L IEW + +HV+MTG A + ++G++ I Sbjct: 222 AALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVII 268 >gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36] gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36] Length = 269 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 135/275 (49%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + +D I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDCVTQNVFFNNDNIRRLADRNTGIGFDQLLVVEAPYDPDLDFHYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC F+ + + T G + + DG ++V+MG P L Sbjct: 61 DGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELAP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP F +++ +I + V++GNPH + V DD+ LA G+ + Sbjct: 121 DKIP----FRATKQEKTYILRALDSTVFCG-AVAIGNPHCVTIV-DDIETAPLADLGHAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 A H F VN +V S + LR +ERGVG T ACG+ ACA+ V K + V Sbjct: 175 AHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDVC 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +++ GG L I W VFMTG A ++G+++I Sbjct: 235 IELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269 >gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1] gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1] Length = 283 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 5/284 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+V DMR +T AI +L+ D T+FDQIM IH D I I Sbjct: 4 PFSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGNG RCV+ +LT + F ET GI+ K D ISVDMG P + Sbjct: 64 WNADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP LR+ +VS+GN HAIFFVE+D+ + L +G+ Sbjct: 124 AKEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F + N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V + GG L I + +++H+ MTG K + G L+ TG + K + Sbjct: 239 DVNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKKDD 282 >gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] Length = 260 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 99/271 (36%), Positives = 142/271 (52%), Gaps = 15/271 (5%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRII 67 KM G+GN +VID R +T + A++ FDQ+ +I DA DA + Sbjct: 1 MKMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFY 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS +CGN RC+ R++ + T T+RGIL+A + G S++MG+P L W Sbjct: 59 NSDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTW 118 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLAR +D D I P MGNPH FFVE D DLA+ G L+ Sbjct: 119 QEIPLARD---VDLDALPIDGA-------PMATGMGNPHCTFFVE-DAEEVDLAAMGALI 167 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP++ N+ A + + L +R WERGVG+T A GS++CA+ VA+ T R V Sbjct: 168 EHHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVR 227 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + + GG + I+W ++ V+MTG + G Sbjct: 228 IDLDGGTIHIDWRNDG-VWMTGPTAHVFSGV 257 >gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 273 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R A D I+L+ + A + Sbjct: 1 MKFTKMQGTGNDFIVIDDRKNSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSIS 117 + I+N DGS CGNG+RC +++ +K +S T ET G IL + + ++ Sbjct: 59 MIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG P + + IP AR +++ R + + N + MG PH I F L Sbjct: 119 INMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLED 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y++ G + K F +G N++ V S + ++TWERG G T ACG+ +CASV+A+ Sbjct: 172 YNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 231 KLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273 >gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836] Length = 279 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%) Query: 4 SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + ++ ++ ++ AI + + D ++LI +++ D Sbjct: 2 KKLKFTKMHGAGNDYIYMNGFIQEIEDPSALAIRLSNRNFGIGSDGLVLILPSENS--DF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116 +++ N DGSE + CGN RCV +++ +K ET G+ + + + Sbjct: 60 RMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARKV 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEPILD IP+ + + I + VSMGNPHA+ F + Sbjct: 120 TVDMGEPILDPVQIPVKVDKEPVLNFPLDIDGK----IWEISCVSMGNPHAVVFTTG-IK 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G KHP+F N V ++L++R WERG G T ACG+ ACA+ VA+ Sbjct: 175 ELDLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAVAA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +++ ++GG L IEW + NNHV+MTGEA +EG++ Sbjct: 235 ILNGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278 >gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] Length = 270 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 28/284 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + ++ + + D ++LI A D Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 +RI N DGSE + CGN RC+ ++L + + T +T+ GI L ++ + + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P D K P+ + K +SMGNPH + FVE D+ Sbjct: 120 VTVDMGRPA-DMKEQPIEANGQKF----------------TGTTLSMGNPHLVIFVE-DI 161 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 162 KDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVA 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + K+ R + M GG L IEW + +HV+MTG A + ++G+ Sbjct: 222 AALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265 >gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 285 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 14/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN ++ID R N TS N + D I+L+ + + Sbjct: 4 IKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQNSER-G 62 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSI 116 + ++I N DGS + CGNG+RC++++L + + F ET+ G L I Sbjct: 63 ANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGDHI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG P + K IP S + ++ + N + + MGNPH + ++ + Sbjct: 123 RVNMGSPSFEPKAIPTTLSPNNLNIPEGTVTIKNENIT--MYGIGMGNPHMVIILKS-IE 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G F N+ V ++ + ++ WERG G T ACG+ ACA + + Sbjct: 180 DLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGACACLAVT 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 L TN V + GG L I+W + + ++MTG A+ + G+L I Sbjct: 240 SLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285 >gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] Length = 271 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 15/276 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 S V F KM G+GN +VID R +T + A++ FDQ+ ++ + A D Sbjct: 7 SGVPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMK--KRADADV 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ +CGN RC+ R + + T T RGIL+A++ G S++MG Sbjct: 65 HLTFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMGL 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W+ IPLAR D P+N P MGNPH FFVE D DLA+ Sbjct: 125 PQLTWQEIPLARDVD------LDALPINGA----PMATGMGNPHCTFFVE-DAEAIDLAA 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ HP++ + N+ A + + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 174 MGALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGLT 233 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 R+V + + GG + I+W D+ V+MTG + G Sbjct: 234 GRSVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSGV 268 >gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] Length = 290 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 136/291 (46%), Gaps = 20/291 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 + MV F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 2 TRMVMFSKMHGLGNDYVVIDESTQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-AG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN--RDG 114 D RI N DGSE + CGNG+RC +F+ ++++ ET+ GI + DG Sbjct: 61 DGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIGDDG 120 Query: 115 SI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 S+ VDMG IP+ + + + +S+GNPHA+ FV Sbjct: 121 SVVSSRVDMGTATFKTDQIPMDVGECEFIDRFLPVEGEDIKLT----ALSVGNPHAVIFV 176 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DD DL G + HP+F E +N+ V + + TWERG G T ACG+ A A Sbjct: 177 -DDTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTGATA 235 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 SV+A L K + +V V + GG L I+ + +M G+A ++G L Sbjct: 236 SVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286 >gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] Length = 286 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 16/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAI----NALSTDDNTHFDQIMLIHDFQDAS 59 + F K G GN ++ID R + S+ I D ++ I + + + Sbjct: 4 IIFEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILEP-NGN 62 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V++L + ET G+ +A+ N DG Sbjct: 63 NHARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYN-DGQ 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ISV MG+PI+D K IP + DK F + V MGNPH IFFVE D+ Sbjct: 122 ISVKMGKPIIDIKSIPT--NIDKKQNFLPAFLFKESNFEYEGYAVGMGNPHLIFFVE-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + H +F E N+ +++ + +++ + WERG G T ACG+ ACA VA Sbjct: 179 TKISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + L N + + GG L I W + M+G AKK + G + Sbjct: 239 AFNLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSGNYFL 285 >gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476] gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476] Length = 283 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 124/285 (43%), Positives = 169/285 (59%), Gaps = 5/285 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+V DMR +T AI ALS D HFDQIM I + D I I Sbjct: 4 PFSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ ++CGNG RCV+ +LT ++F E GI+ K D ISVDMG P + Sbjct: 64 WNADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G Sbjct: 124 AKEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA +TS +SL+LRTWERG GLT ACGSAACA VA+ T R + Sbjct: 179 LEHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG L I + +++H+ MTG K ++ G L+ TG + K N Sbjct: 239 DVNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDNS 283 >gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] Length = 289 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 128/279 (45%), Positives = 175/279 (62%), Gaps = 1/279 (0%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +S + F KM G+GN+I+V+D+R T+D A++ D +HFDQ+M++H + ++ Sbjct: 4 ASSLPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTES 63 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE +CGNGMRCV L + + RK F ET G+L SI+VDMGE Sbjct: 64 LVRIYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGE 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P W+ IPLA F IGP++ L +P VV++GNPHAIF+V DD+ YDL Sbjct: 124 PRFGWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWV-DDVEAYDLGR 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L HP+F E N+S+A+VTS SL L+TWERG GLT ACGSAACA+ V++ T Sbjct: 183 LGPMLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLT 242 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V V + GG L + W DNN + MTG + E+EG +D+ Sbjct: 243 ERTVDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDL 281 >gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] Length = 288 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 147/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGN HA+ FV DD+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNSHAVIFV-DDVEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285 >gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] Length = 275 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 129/279 (46%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F KM+G+GN +VID N+ A+ L+ DQI+L+ VD Sbjct: 1 MLRFTKMQGLGNDFVVIDAIHQTVNLDEAALRRLADRHYGIGCDQILLVEPPASDEVDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + R ET G +V G + V+MG Sbjct: 61 YRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRVEMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +PL DR+R VS+GNPHA+ V D+ +A Sbjct: 121 VPRHAPAEVPLLA-----DRERSVYTVNVEGVDWQFGAVSVGNPHAVITVA-DVDEAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L +H +F E N+ +V L LR +ERG G T ACGS ACA+ V Sbjct: 175 RVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVVGILQGT 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 V + + GG L I W V+++G A +EG++ Sbjct: 235 LESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273 >gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] Length = 267 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 141/274 (51%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R + NI AI + DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + P+ L +P +++GNPHAIFFV D + L Sbjct: 117 KFHWTDIPTSQECDTLHL------PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V + GG LLI + +N + M G + G Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNG 263 >gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] Length = 269 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 122/275 (44%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN ++ID + I ++ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVMIDTISQRIKLRPRDIRRIADRRRGVGCDQVLLVEPPGQPEADFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGNG RC RF+ R + E ++ + + + VDMG P+ Sbjct: 61 DGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSSLMTLRLRENHEVEVDMGAPLFTP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP R+ + + G V+SMGNPHA+ V +D+ L G + Sbjct: 121 ADIPFRRAETAPEYELTAAGE-----TLRVGVLSMGNPHAVLRV-NDVNDGSLERLGEAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E N V + LR +ERGVG T ACGS ACA+VV + + V+ Sbjct: 175 RSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEACGSGACAAVVYGRRMGWLDDRVT 234 Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V++ GG L I+W ++ V MTG +EG + + Sbjct: 235 VELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269 >gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] Length = 307 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 33/308 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + +D + A D ++ I+ D S+D Sbjct: 1 MFFTKMHGCGNDYVYVDGSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL------VAKENRDG 114 + + N DGS + CGNG+RCV +++ + G + +N Sbjct: 61 EMEMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVI-VSAGKKKYINLEIGTDNLVF 119 Query: 115 SISVDMGEPILDWKLIPLARSFD-----------------KMDRDRFHIGPVNHLFLRNP 157 S+ VDMG PIL +P+A D M + Sbjct: 120 SVKVDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDGKEWKI 179 Query: 158 FVVSMGNPHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 VSMGNPHA+ F+ +D+ +++ G + +F N +V ++ +R W Sbjct: 180 TCVSMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNVHMRVW 239 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKK 273 ERG G T ACG+ CA+ VA T+ V+V +LGG + W N + V M G A Sbjct: 240 ERGTGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIMEGPATT 299 Query: 274 EWEGKLDI 281 + G++D+ Sbjct: 300 VFTGEIDL 307 >gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] Length = 295 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 20/292 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +VI D ++ ++ + + D ++ + D D Sbjct: 3 LNFTKMHGLGNDYIVINEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +F+ R+ ++ ET+ G+ V++ N + SI Sbjct: 63 IRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKSI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH----LFLRNPFVVSMGNPHAIFFVE 172 V MG P + K IP+ K + D F + L VV++GNPHA+ F++ Sbjct: 123 KVFMGAPTFELKDIPMVVEG-KSENDVFLDEEIELKNALLNSVKLSVVNVGNPHAVIFMK 181 Query: 173 DDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+ L G + H +F E +N+ + + + + + TWERG G T ACG+ Sbjct: 182 DNNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTTACGT 241 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +SV+ + L KT V + GG L IE ++ V+M G+A ++G+L Sbjct: 242 GTTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292 >gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 284 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VI+ +T I LS + FDQ++LI + D Sbjct: 11 IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RCV FL + ++ T + + K D +I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + I +++ K+ + F + +N +VS+GNPH + VE + + + Sbjct: 131 PSFKLEEISISK---KIVLNNFSVKLINKNLKC--SLVSIGNPHCVIKVES-INNAPVKK 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V +LGG L+I+W N ++M G A ++G + I Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284 >gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 269 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 145/277 (52%), Gaps = 14/277 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN +VI+ R + + + AI D ++++ D +RI N D Sbjct: 1 MHGLGNDFIVIEARE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMRIFNAD 57 Query: 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVDMGEPI 124 GSE + CGNG RC +++ R +K++ ET+ G+++ + + S+ V MG PI Sbjct: 58 GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP+ K + I + + +G PH I FV+ L + G Sbjct: 118 FEANKIPVKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVKS-LDENMIKELG 172 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L KT R Sbjct: 173 PKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTER 232 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 233 NVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269 >gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b] Length = 277 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ F + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE+ + + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1] gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1] Length = 289 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 22/294 (7%) Query: 1 MQSSMVD---FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHD 54 M+ + F KM G+GN + ++M + ++ A + D ++LI Sbjct: 1 MRRGSMRSFSFTKMHGLGNSYIYVNMFKECLTEEELSYIAKRVSNVHTGIGSDGLILICP 60 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110 A V +RI N DGSE ++CGNG+RCV ++ ++ + F ET+ G++ A+ Sbjct: 61 SDVAPV--KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFV 118 Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNPFVVSMGNPHA 167 + S+ ++MG+P L IP+ D + + + VSMGNPHA Sbjct: 119 EDGKVNSVEINMGKPRLSRVEIPMIGKEDDIVVSEPIEFEGHTY----YMTGVSMGNPHA 174 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 +F+V D + + S G ++ K F EG+N+ V + L R WERG G+T ACG+ Sbjct: 175 VFYV-DQIEDAPVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGT 233 Query: 228 AACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ACA+VVAS KT R V + GG L I W +N V M G A+ G Sbjct: 234 GACAAVVASVLNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAETICTGVY 287 >gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] Length = 272 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 130/286 (45%), Gaps = 29/286 (10%) Query: 5 MVDFAKMEGIGNKILVIDM--RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 MV F KMEG GN + ++ + ALS D +++I + D Sbjct: 1 MVRFTKMEGAGNDYIYVNNLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPGYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 R+ N DGSE + CGNGMRC R+ R R+ +T G +V + D + Sbjct: 61 FRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGSFA 120 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VD+G P + + R + VV G PH + FV DD Sbjct: 121 GVRVDLGPPRI-------------LGDRRIAAEGREYPVT----VVDTGVPHIVIFV-DD 162 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DLA G L +HP F VN++ A L RTWERG GLT ACG+ A A +V Sbjct: 163 VDAVDLAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGASAVLV 222 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A+ +T RA V+M GG L +EW + HVF+TG A+ +G Sbjct: 223 AACLKGRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAEFVCDGVF 268 >gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8] gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8] Length = 1351 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 144/292 (49%), Gaps = 20/292 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM G GN + + DN A+N D ++L+ + A Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGVGGDGVILVCRSKVA-- 1125 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-GSI- 116 D +R+ N DGSE + CGNG+RCV +F+ + R T ET+ GI+ K +R G + Sbjct: 1126 DGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHYGEVN 1185 Query: 117 --SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +VDMG IL+ + IP D+ + I H VSMGNPH I F+ Sbjct: 1186 GATVDMGAAILEPERIPCTLPADENGRVVDREVEIAGEKHRVT----CVSMGNPHCIVFM 1241 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +++ ++ G P+F E VN +V +L +R WERG G T ACG+ ACA Sbjct: 1242 -NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACA 1300 Query: 232 SVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +VVA+ N V+V + GG L I + ++ V+MTGEA +EG + + Sbjct: 1301 AVVAAVLNGYCPMNEEVTVMLRGGNLTIRYTED-TVYMTGEAVTVFEGDIRV 1351 >gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] Length = 267 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 96/274 (35%), Positives = 141/274 (51%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R + NI AI + DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + P+ L +P +++GNPHAIFFV D + L Sbjct: 117 KFHWTDIPTSQECDTLHL------PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V + GG LLI + +N + M G + G Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263 >gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] Length = 284 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 103/275 (37%), Positives = 148/275 (53%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST--DDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+ + T + I A++ D DQ++ I + A++R Sbjct: 5 FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E +CGNG RCV L + F+T+ G L + ++VDMG P L Sbjct: 65 FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPLA + D R +GP++ ++ P VSMGNPH +FFV+ + G+ Sbjct: 125 EWSQIPLAEAMDTA-RVELQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F EGVN+ A V S + + L+ WERG GLTAACG+ ACA+ VA+ T+R Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V+ G L IEW + + HV MTG ++ GKL Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278 >gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268] gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268] Length = 275 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 34/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + ++ D ++LI A DA++ Sbjct: 1 MKFTKMEGLGNDYVYVNAFTEKVENPGELARRIADRHFGVGGDGLILIEPSDKA--DAYM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116 + N DGSE CGNG+RCV +++ +R+ ET GI + K+ + Sbjct: 59 HMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKDGKMEKA 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 +VDMGE LD +L + + ++ F+ + +GNPHA++F+ED+ Sbjct: 119 TVDMGEVKLDGEL-----------PENIEVRGMSLQFVG----IDVGNPHAVYFLEDNPE 163 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + DL G +HP F + VN +V S + R +ERG G T ACG+ A Sbjct: 164 LSVSSVSELDLEKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTGA 223 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 A+VVA + + +V +LGG L I + H FMTG A++ + G+ Sbjct: 224 TAAVVAGILMGRLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGE 273 >gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 269 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNI 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLISGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] Length = 286 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 106/266 (39%), Positives = 147/266 (55%), Gaps = 5/266 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN+ILV+D+RG + A++ FDQ+M +HD ++ DAF+RI N D Sbjct: 13 MNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNVD 72 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS +CGNG RCV + +R ++ T + + + +VDMG P LDW+ I Sbjct: 73 GSLSGACGNGARCVA-YALARDGKERLRLATDAARIETRREAETVFTVDMGRPRLDWREI 131 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+R D + P VSMGNPHA+FFV D L L + G L H Sbjct: 132 PLSREADTR---TVALEPPVAGAPTQFSAVSMGNPHAVFFVPDALAT-PLETLGPKLEHH 187 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F + N+S A++ + + LR WERG G T ACGSAACA++VA+ T R V++ Sbjct: 188 PLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGFTERRARVRL 247 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWE 276 GG L IEW D++HV MTG + E+E Sbjct: 248 PGGDLHIEWRDDDHVMMTGPVEFEFE 273 >gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 269 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] Length = 269 Score = 297 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 144/274 (52%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G+ VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT + L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] Length = 275 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 131/279 (46%), Gaps = 9/279 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID+ N+ I ++ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGNG RC RF+ + ++ ET G + +DG I+ ++G PI D Sbjct: 61 DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + D G +SMGNPHA+ V D + +++ G L+ Sbjct: 121 TQIPFQ---PEDSEDNAEYGLTVAGNTHRIGALSMGNPHAVLTV-DSVADAPVSTLGPLI 176 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP F E VN+ + S + LR +ERGVG T ACGS ACA+ V + AV+ Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236 Query: 248 VKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIKTG 284 V + GG L + W DN+ V++ G +EG + ++ G Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275 >gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] Length = 291 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 168/293 (57%), Gaps = 5/293 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M S + F KM G+GN V+D R +T+D +A++ DQ++++ A Sbjct: 1 MAFSHISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D F+RI+N DGSEV +CGN RCV + + + R+ T ET G+L A+ + DG ++VD Sbjct: 60 -DVFMRILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P W+ IPLA+ I + L P V ++GNPHAIF+V D+ YD Sbjct: 119 MGVPRFGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWVA-DVDAYD 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA+FG L P+F E N+S+A V +++ LR WERG G+T ACG+AACA+ V++ Sbjct: 178 LATFGGALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAART 237 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 +T R+V +++ GG + IEW D++H+ MTG E+EG L + G E Sbjct: 238 GRTGRSVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGGSLTVARE 290 >gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50] Length = 224 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P F ++ +I + VVSMGNPH + V DD+ + + Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224 >gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 293 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 140/288 (48%), Gaps = 21/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDAS 59 M+ F KM G+GN +++D R I +D + DQ+++I +A Sbjct: 1 MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG---SI 116 D F++I+N DGS +CGNG RCV ++ + ET +L A+ +R G I Sbjct: 60 -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG LDW+ +PLA++ D + D P SMGNPHA+ FV DD+ Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAPA------LAVCQSMGNPHAVMFV-DDVA 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G L +F + N+SI + +R WER VG+T ACGS ACA VA+ Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 R + M GG ++IEW DN V MTG G LD Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279 >gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 16/293 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G GN + +D AI+ + LI + D Sbjct: 1 MKIEFTKMHGAGNDYVYVDCTKEMLP-NPGAISEYVSHRRFGIGSDGLICVCKSDVADFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N D SE + CGNG+RCV +F+ + + + T ET+ G+ +V + Sbjct: 60 MRMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAK 119 Query: 118 VDMGEPILDWKLIPLARSF-----DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 VDMG+P+ IP+ + + H N +SMGNPH + FV Sbjct: 120 VDMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFV- 178 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ +L G H +F EGVN +V ++ R WERG G T ACG+ A A Sbjct: 179 DDVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAV 238 Query: 233 VVASGCL---HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VA L K ++V GG L + N+HV + G A ++G +DI Sbjct: 239 TVACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDIP 291 >gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603] gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603] Length = 280 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M AI A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ D ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L + IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 277 >gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] Length = 263 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 8/271 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN L++D R +++ I L+ +N FDQ+++I D++ + I N D Sbjct: 1 MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G E ++CGNG RCV FL K K + T GIL + +N + +I++DMGEPI DW+ I Sbjct: 59 GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+ ++MD I ++ + + +S+GNPH IFF +D+ L G + H Sbjct: 119 PLS---EEMDPSNVCITLKDNSSF-DGYALSVGNPHIIFF--NDIETDKLKIIGPEIENH 172 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F + N++ A++ ++ + WERG GLT ACG+ ACA+ VAS + T R V++ Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L I+W NN + M+G E + I Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263 >gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7] gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7] Length = 1351 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 143/292 (48%), Gaps = 20/292 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM G GN + + DN A+N D ++L+ + A Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGIGGDGVILVCRSKVA-- 1125 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-GSI- 116 D +R+ N DGSE + CGNG+RCV +F+ + R T ET+ GI+ K +R G + Sbjct: 1126 DGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHYGEVN 1185 Query: 117 --SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +VDMG ILD IP D+ + I H N VSMGNPH I F+ Sbjct: 1186 GATVDMGAAILDPVKIPCTLPADENGMVVNREVDIAGEKH----NVTCVSMGNPHCIVFM 1241 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +++ ++ G P+F E VN +V +L +R WERG G T ACG+ ACA Sbjct: 1242 -NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACA 1300 Query: 232 SVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + V+V + GG L I + + V+MTGEA +EG + + Sbjct: 1301 AVVAAVLNGYCPKDEEVTVMLRGGNLTIRYT-DETVYMTGEAVTVFEGDIRV 1351 >gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14] gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14] Length = 287 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 25/295 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60 S+ + F KM+G GN + ++ S A S D ++LI A Sbjct: 2 SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWSKYHFKIGSDGLVLIGRPSDPAKA 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------- 111 D + I N DGSE CGN RC+ ++L + ++ ET+ G+ + K + Sbjct: 62 DYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDNKET 121 Query: 112 ---RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 S++VDM EP L+ K ++ I + N VSMGNPH + Sbjct: 122 GKTEVESVTVDMLEPQLEEK-----AQYNAEVGKNIQIEDR----IFNGTFVSMGNPHYV 172 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FV +D+ D+A +G+ L HP F + N+ A V + + R WERG G+T ACG+ Sbjct: 173 IFV-NDIDTIDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGITLACGTG 231 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 ACA+ VA+ + R + M GG L IEW +NNH++MTG A +EG++++ Sbjct: 232 ACATAVAAALTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIELP 286 >gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] Length = 279 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 11/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM+G N + +D R G +I + A + + D I+ I D Sbjct: 1 MKLSFTKMQGCANDYIYLDCRASGVPADIAALAQRLSARHFSVGADGIICICAPVTPGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE Q CGNG+RCV +L + +++ +T G+ V+M Sbjct: 61 GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSGVKRITRQGAQLWQVEM 120 Query: 121 GEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G +P + D + + + +S+GNPH + VE D+ Sbjct: 121 GTYSTLPADLPAIHMGEDPLVDQPLTVEGK----VWKVTCISVGNPHCVTVVE-DVDSLK 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 176 LEAIGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALTEL 235 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V++ GG L+I + MTG A +EG ++ Sbjct: 236 GICPAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279 >gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli] gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli] Length = 276 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 139/286 (48%), Gaps = 16/286 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ +F KM +GN +++D ++ I + FDQ++LI + S Sbjct: 1 MKT---EFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQS 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118 + RI N +G+EV CGNG CV R+L + + + T+ L G ++ Sbjct: 58 KHFYYRIFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTA 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYH 177 ++G PI D + IP I P+ F R V S+GNPH + V + L Sbjct: 118 NLGLPIFDPEKIPFINPSKA------PIHPLETPFGRFDCCVLSLGNPHCVIQV-NCLEK 170 Query: 178 YDLASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G L +HP F +G NL + ++ + +DLR +ERGVG T ACGS ACA+V+A Sbjct: 171 APLEDLGLYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIA 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 L++ + V V + GG L + W +++ VF+ G + G +D Sbjct: 231 GRLLNRLTKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276 >gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W] gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W] Length = 280 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506] gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506] Length = 293 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 113/275 (41%), Positives = 159/275 (57%), Gaps = 3/275 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+R + AL+ +D FDQIM ++ + AF+RI Sbjct: 8 PFVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 IN DGSE +CGNG RC+ + R FE++ G+L +G I+ DMG P Sbjct: 68 INADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA GP LR P VV++GNPHAIF+V D+ DL +G Sbjct: 127 WHDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWV-HDIEAVDLGRYGPE 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A+V S + + L+ WERG GLT ACGSAACA+ V++ + T R V Sbjct: 186 LEHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W + ++H+ MTG A E++G+L Sbjct: 246 TVTLPGGDLVIDWRESDDHILMTGPAVFEFDGRLT 280 >gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 270 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 139/285 (48%), Gaps = 27/285 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + I+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYINCFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 R+ N DGSE Q CGNG+RCV +++ +++ F ET GI K + I+V Sbjct: 59 RMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRITV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + +P + + + + F+ +SMGNPHAI+++ D + Sbjct: 119 DMGVPEVTSQ-VP----------EPIWVNGMEYEFIG----ISMGNPHAIYYM-DFIDGL 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G H F E N +V + + +R WERG G T ACG+ A AS VAS Sbjct: 163 DLEAIGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASAL 222 Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 +T V V++ GG L I W + HVFMTG A + +EG+ DI Sbjct: 223 SGRTAHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267 >gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] Length = 280 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 143/284 (50%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23] gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23] Length = 267 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 131/286 (45%), Gaps = 28/286 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDA 62 S + F KM G GN + +D + A I D ++LI D Sbjct: 2 SKIHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE CGN RC+ ++L R T+ G+ L + S+ Sbjct: 62 TMRIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEIRLLTLSGVKVLSLHVTDGFVESV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEP+L+ + + + VSMGNPH + F DD+ Sbjct: 122 TVDMGEPVLENES-----------------QFLPSRNPGHGTFVSMGNPHYVIFT-DDVD 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L HP F + N+ ARV + + R WERG G+T ACG+ ACA+ VA+ Sbjct: 164 Q--VGEAGPALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATAVAA 221 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 K +R + M GG L IEW + +NHV+MTG A+ +G++ + Sbjct: 222 ALTGKASRTSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEIAL 267 >gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105] gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105] Length = 291 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S+++ F KM G GN +V+D +++ I L+ DQ++++ + A D Sbjct: 4 SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLADRHFGVGADQVLVVESSELA--D 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EVQ CGNG RC +++ + + T ET+ GI+ + + + V+ Sbjct: 62 FKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWVKVN 121 Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG L+ + +P +R + + R + L V SMGNPH + ++ Sbjct: 122 MGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVGVASMGNPHVVILLDQ 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + G L HP F E VN+ + + LR +ERGVG T ACG+ ACA+ Sbjct: 182 PASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGTGACAAA 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDI 281 V + V V GG L IEW ++ V MTG A+ +EG+ + Sbjct: 242 VVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEFYL 291 >gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 279 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 11/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM+G N + +D R G +NI + + + D I+ I Q A D Sbjct: 1 MKLSFTKMQGCANDYIYLDCRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RCV +L + + +++ +T+ G+ G V+M Sbjct: 61 GMMRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVEM 120 Query: 121 GEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G +P + + + + + +S+GNPH + VE D+ Sbjct: 121 GAYSAMPASLPAVNMGEEPLVDKELTVDGK----TWHVTCISVGNPHCVTVVE-DVDSLK 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 176 LEEIGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTEL 235 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V++ GG L I + MTG A+ EG ++ Sbjct: 236 GICPAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279 >gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] Length = 280 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] Length = 280 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 30/297 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59 M++ M +F KM+G GN + +D + AI D ++LI + A Sbjct: 1 METDM-EFTKMQGTGNDYVYVDCFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSRTA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKEN 111 D + + N DGS+ CGNG+RCV +++ +++ T ET+ GI L ++ Sbjct: 59 -DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKRTITVETLAGIKTLELEIEDG 117 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + S++VDMGE L +L + + + F+ +++GNPHAI++V Sbjct: 118 KAVSVTVDMGEAALTSRL-----------PEDITVDGKEYRFVG----INVGNPHAIYYV 162 Query: 172 EDDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 D + DL G H F + VN V + L++R WERG G T ACG+ A Sbjct: 163 -DQVDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACGTGAT 221 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286 ASV+AS + T V + GG L+I + ++ H+FMTG A + + G +DI + Sbjct: 222 ASVMASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDIPEEIY 278 >gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 280 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FVE D+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE-DVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3] Length = 279 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 121/284 (42%), Gaps = 11/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM+G N + +D R G +NI + + + D I+ I A D Sbjct: 1 MKLSFTKMQGCANDYIYLDCRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 A +RI N DGSE + CGNG+RCV +L + M + +T+ G+ +G V+M Sbjct: 61 AMMRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G +P M P+ L +S+GNPH + V ++ Sbjct: 121 GAYTAMAAALPAV----NMGEGPLVDLPLEVEENLWRVTCISVGNPHCVTIVP-EVDSLK 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 176 LEQIGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTEL 235 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I + MTG A+ EG ++ Sbjct: 236 GICPAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279 >gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] Length = 280 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 29/290 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ G DN+ A+ D ++ I + A D + Sbjct: 1 MRFTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE-NRDGSIS--- 117 RI N DGSE CGNG+RC+ +++ + + T ET G+ + RDG + Sbjct: 59 RIFNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVL 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L + +A VS+GNPHA+ F + Sbjct: 119 VDMGRPELSPPVKLMAAGR-----------------TWQAVPVSVGNPHAVVFC-GGVDA 160 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +LA G L +HP F + VN+ A+ L +R WERG G T ACG+ ACA++ A+ Sbjct: 161 LNLAELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAA 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286 +R +V + GG L + W +N H++MTG A +EG++ ++ + Sbjct: 221 RAGLVSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLENENY 270 >gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 280 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2] gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2] Length = 290 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 117/274 (42%), Positives = 158/274 (57%), Gaps = 2/274 (0%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM GIGN+IL++D+RG +T A++ FDQ+M++ D + AF+ I N Sbjct: 10 VKMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFN 69 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS+ +CGNG RCV L R ET G L + + SV+MG P L Sbjct: 70 ADGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAA 129 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL+R GP + L+NP VV+MGNPHAIFFVE D+ YDLA+ G +L Sbjct: 130 EIPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLE 188 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 P+F E N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+ T R +V Sbjct: 189 HDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATV 248 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + GG L I W + ++ V MTG E+E +LD Sbjct: 249 ALPGGELDIFWRESDDMVVMTGPVAFEFETRLDP 282 >gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 280 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 23/286 (8%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + I+ + + ++ + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNM--FEEQISEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHAI FV DD+ Sbjct: 117 MGAPRLTRAEIPMLGEDETPFIRENFLYNNHRYAFT----AVSMGNPHAIIFV-DDVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + V M G A+ G + K Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYEYK 277 >gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] Length = 280 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE ++CGNG+RCV ++ ++ F ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676] gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676] Length = 280 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012] gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 280 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] Length = 286 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 M + F+KM GIGN +ID +D A + HF D ++ + Sbjct: 1 MDLKGLKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110 A D R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 61 VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + VDMG IP+A D+ + N +S+GNPHAI F Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D++ D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280 ++ ++ L + V + + GG L ++ FM G A+ ++G++ Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEIQ 286 >gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] Length = 301 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS----TDDNTHFDQIMLIHDFQDASVD 61 + KM G+GN L +D + + D ++L+ ++A Sbjct: 15 LRLTKMHGLGNNYLFLDGLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115 +RI N DGSE + CGNG+RC+ R + R + + FT ET G + + + + Sbjct: 75 FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134 Query: 116 ISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P L+ IP+A ++ + +SMGNPH DD Sbjct: 135 VTVDMGVPRLERGAIPMAGPAGERAVEVPLEVEAAGERRTFTVTALSMGNPHC-VVFVDD 193 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DLA G HP F + VN +V S + + +R WERG G T ACG+ ACA V Sbjct: 194 VAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGPTLACGTGACAVAV 253 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A +T R V+V++ GG L I W ++ HV+MTG A + D + Sbjct: 254 AGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPAAYIADVTYDPR 301 >gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] Length = 280 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M +++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277 >gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4] gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4] Length = 303 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 145/299 (48%), Positives = 195/299 (65%), Gaps = 6/299 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + V+FAKM G+GNKILV+DMRG D + A AL+ + THFDQIM IHD + A A Sbjct: 2 GNRVEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I IINCDG+ Q+CGNG RCVV+ L++ K+FTF+T+ GIL A E+ D ++SVDMG Sbjct: 62 YIDIINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGS 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP++ L +P V+SMGNPHA+F+V+ D YDL Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLER 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HP+F E N+++A+VTS ++ RTWERG GLT ACGSAACA+ V++ + Sbjct: 182 FGPLLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRA 241 Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK-NEDDEA 295 R V++ + L IEW + + HV MTG A+ EW G+LD +TG W ++ EA Sbjct: 242 ERKVTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQAGHEA 300 >gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 280 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 277 >gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 284 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 8 KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+ Sbjct: 68 FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M EP + + S + + F I +N + N +VS+GNPH I V+ + + Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLINENLICN--LVSIGNPHCIIKVQS-IKNAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 182 VNIIGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 142/280 (50%), Gaps = 15/280 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 +S + F KM G GN +VID RG +++ AL FDQ+ I D + D Sbjct: 7 TSGLGFMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHE--GAD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RCV ++ + R + T RG L A DG +SV+MG Sbjct: 65 FALDFWNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPLAR + P + P V MGNPH IFFVE D DLA Sbjct: 125 APQLLWSEIPLARD----------VVPDSLPLAGAPAAVGMGNPHCIFFVE-DAEAVDLA 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + P+F E N+ A + + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 GQGAAVETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V ++M GG L ++W ++ V+++G +EG+L Sbjct: 234 TGRQVVLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRLSP 272 >gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] Length = 286 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 M + F+KM GIGN +ID +D A + HF D ++ + Sbjct: 1 MDLKGLKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110 A D R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 61 VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + VDMG IP+A D+ + N +S+GNPHAI F Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D++ D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280 ++ ++ L + V + + GG L ++ FM G A+ ++G++ Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEIQ 286 >gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31] gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31] Length = 289 Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 9/280 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-------NTHFDQIMLIHDFQDASV 60 F KM G+GN +VI+ + T++ I A++ DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A++R N DG E +CGNG RCV L ++ S F+T+ G L K D ++VDM Sbjct: 65 SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA D + + +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ HP+F EGVN+ A + + + + L+ WERG GLTAACG+ ACA+ VA+ Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R V+ G L IEW + + HV MTG E+ GKL Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKL 283 >gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] Length = 280 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ V DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYEYK 277 >gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp. (strain APS) gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 305 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 29 KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 88 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+ Sbjct: 89 FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 148 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M EP + + S + + F I +N + N +VS+GNPH I V+ + + Sbjct: 149 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAP 202 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 203 VNIIGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 262 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 263 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] Length = 292 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 17/282 (6%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 MQ + F KM G+GN +V+D R +T AL+ FDQ+ +I Sbjct: 18 MQKDTGLPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVI---SQG 74 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 DA + N DGS +CGN RC+ RFL + T RG L A + +G +V Sbjct: 75 QRDAHLTFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAV 134 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P L+W+ IPLA + D ++ P MGNPH FFVE D Sbjct: 135 NMGQPQLEWQDIPLAEAMDTVEL----------PIEGGPSATGMGNPHCTFFVE-DAEAI 183 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L FG HP++ E N+ + VT + L +R WERGVG T A GS++CA+ VA+ Sbjct: 184 PLEQFGPRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAAR 243 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R V + + GG L I+W ++ V+MTG ++G L Sbjct: 244 RGLTGRKVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVLT 284 >gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205] gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205] Length = 281 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDAS-VDA 62 V F KM+G GN + +D + AI + D ++LI D D Sbjct: 6 TVHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADY 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------RDG 114 +RI N DGSE CGN RC+ ++L + ++ + ET+ GI + K + Sbjct: 66 SMRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVK 125 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S++VDM EP L+ + S + D +F V MGNPH + FV DD Sbjct: 126 SVTVDMLEPKLENPEQFIGPSVLEADGRKFE-----------GTYVCMGNPHFVTFV-DD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+A +G +L + F + N+ A+VT + + R WERG G+T ACG+ ACA+ V Sbjct: 174 IDTIDIAHYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 A+ ++T R S+ M GG L IE+ + ++HV+MTG A +EG++++ Sbjct: 234 AAALTNRTGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281 >gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 8 KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+ Sbjct: 68 FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M EP + + S + + F I +N + N +VS+GNPH I V+ + + Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 182 VNIIGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] Length = 280 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV DD+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 234 KMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 277 >gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 223 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 9/229 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + IP F+ ++ + V+ + VSMGNPHA+ V DD+ + + Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 G + HP F VN+ V + LR WERG G T ACG+ A Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223 >gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] Length = 278 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 11/276 (3%) Query: 8 FAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V++ +++++ A + DQ +++ + A + + Sbjct: 6 FTKMHGCGNDFIVVNTFRETVPEDLSALAQDMCQRRFAVGADQFIILGSAESADANFRMD 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I+N DGS+V+ CGN +RC + ++ ET+ GI A DG++ + + P Sbjct: 66 ILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAVAVP 125 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + L F + VS+GNPHA+ +V D++ +L Sbjct: 126 STTIVDVGLDSEHP-----LFGTPLSAEQYTFPMTAVSVGNPHAVTYV-DEIDLLNLEKI 179 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F N+ +V +++R WERG G T ACGS ACA VAS Sbjct: 180 GPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVASVLHGVAK 239 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + V + GG L IEW V+M+G A ++ Sbjct: 240 SPMKVSLKGGDLEIEWEGRGKPVYMSGSASFVFDAT 275 >gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061] gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC 35061] Length = 286 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56 M + F+KM GIGN +I+ +D A + HF D ++ + Sbjct: 1 MDLKGLKFSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110 A D R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 61 VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + VDMG IP+A D+ + N +S+GNPHAI F Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V D++ D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280 ++ ++ L + V + + GG L ++ FM G A+ ++G++ Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEIQ 286 >gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B'] Length = 279 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 132/284 (46%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + + A+ + D I+LI + A DA + Sbjct: 1 MKFWKMHGIGNDYIYFNCFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +RCV ++L ++ + ET+ GI L + + V Sbjct: 59 RMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL+ IP+ D + I V + N VSMGNPH DD+ Sbjct: 119 DMGAPILEPAKIPVDLEGDVIINHELXIEEVAY----NITCVSMGNPHC-VVFVDDVDDI 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G L + +F + VN + + + +R WERG G T ACG+ ACA VA Sbjct: 174 ELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACAVAVACVL 233 Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K N +++ + GG L I + + +FMTG A K + G ++ Sbjct: 234 NGYAKKNEDITIILKGGELKIRYT-DETIFMTGTATKAFSGDVE 276 >gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 288 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 16/285 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+ GN + ID + + +S D ++LI D Sbjct: 4 TMKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 +R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 62 MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 D+GEP L+ K+IP+ + D+ + + VS GNPH FV D + Sbjct: 122 ADIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVAD 176 Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + +F N++ A + + +R WERG G T CG+ +VVA Sbjct: 177 LDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAG 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 237 VLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281 >gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] Length = 278 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 108/282 (38%), Positives = 143/282 (50%), Gaps = 16/282 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + T+ AL FDQ+ I D Sbjct: 6 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 64 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 123 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ + D GP V MGNPH +FFVE D+ DL Sbjct: 124 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DVEAVDL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 173 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V ++M GG L ++W D V+++G + +EG L + Sbjct: 233 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 273 >gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 305 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 29 KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 88 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+ Sbjct: 89 FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 148 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M EP + + S + + F I +N + N +VS+GNPH I V+ + + Sbjct: 149 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAP 202 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 203 VNIIGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 262 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 263 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286] Length = 280 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN + ++ DN + A+ + D ++LI D Sbjct: 2 KKLKFTKMQGAGNDYIYMNGFTQQIDNPSELAVRLSNRHFGIGSDGLVLILPSDI--CDF 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +++ N DGSE + CGN RCV +++ +K T ET G+ + + Sbjct: 60 RMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKV 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEPIL LIP+ + + + I + VSMGNPHA+ F++ + Sbjct: 120 TVDMGEPILAPTLIPVRVAEEPVLEYPLDIDGK----IWKISCVSMGNPHAVVFMKG-IK 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G +P+F N V +L++R WERG G T ACG+ ACA+ VA+ Sbjct: 175 DLDLPVLGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R +++ +LGG L IEW NNHV+MTGEA +EG+L Sbjct: 235 VLNNHCDRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278 >gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 284 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 8 KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+ Sbjct: 68 FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M EP + + S + + F I +N + N +VS+GNPH I V+ + + Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 182 VNIIGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] Length = 279 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 137/287 (47%), Gaps = 17/287 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60 ++F KM GIGN + ID + + D I+LI + A Sbjct: 1 MTLNFTKMHGIGNDYIYIDCFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDG 114 D +R+ N DGSE + CGNG+RCV ++ K ET+RG+L A K + Sbjct: 59 DVTMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEVD 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ ++M PIL+ IP + + + F VSMGNPH + FV DD Sbjct: 119 SVEINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYFT----CVSMGNPHCVIFV-DD 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + + G+ + +PMF N+ +V + + RTWERG T ACG+ A A V Sbjct: 174 VKNMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVCV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A +T+ + +LGG L++ + DNN VFM GEA+ + G +++ Sbjct: 234 AGFISKRTDNIILNHLLGGDLILTYKDNN-VFMKGEARYAYRGYVEL 279 >gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 249 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 142/256 (55%), Gaps = 17/256 (6%) Query: 35 INALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-- 92 + + D ++ I +++ D +RIIN DGSE + CGN +RCV +++ Sbjct: 1 MRLCNRHFGIGADGLVYILPSKES--DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLV 58 Query: 93 --KRKSFTFETI-RGI----LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145 + T +TI GI + K+ + ++ VDMGEPIL+ IP + + + + Sbjct: 59 EHQNDEITIQTIGAGIQRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVE 118 Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205 + F VSMGNPH + +V+D + +L +G LL HP+F + +N+ A V Sbjct: 119 VNGRRFQFT----AVSMGNPHCVIYVDDAV-TMNLHEWGPLLEVHPLFPKKINVEFATVQ 173 Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNH 264 S + + +R WERG G T ACG+ ACA++VAS + T+R ++ + GG L IEW++ +NH Sbjct: 174 SRDRVIMRVWERGAGPTLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNH 233 Query: 265 VFMTGEAKKEWEGKLD 280 V+MTG A + ++G+L Sbjct: 234 VYMTGPAAEVFQGRLS 249 >gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 284 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + + +S D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 59 RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L+ K+IP+ + D+ + + VS GNPH FV D + Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVADL 173 Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ A + + +R WERG G T CG+ +VVA Sbjct: 174 DVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 284 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + + +S D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE + CGN +R V +++ + ET+ G+ L + +I Sbjct: 59 RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L+ K+IP+ + D+ + + VS GNPH FV D + Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVADL 173 Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ A + + +R WERG G T CG+ +VVA Sbjct: 174 DVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] Length = 288 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 21/288 (7%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN+ + ++ + + + +I D ++LI A D Sbjct: 1 MKFTKMHGLGNQYIFVNQFEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE------NRDG 114 +RI N DGSE ++CGNG+RCV ++ + + S T ET+ GI+ A N Sbjct: 59 QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118 Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P L+ K IPL + ++ + H VSMGNPHA+FFV + Sbjct: 119 RVTVDMGVPRLEPKEIPLLGTEKTPVIKEGIEVDNARHE----MTAVSMGNPHAVFFV-N 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + L + G + KHP F + VN+ + S + R WERG G+T ACG+ ACA+V Sbjct: 174 SIENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAV 233 Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA+ K V V + GG L I W ++ V+MTG A+ G+ Sbjct: 234 VAAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAETICIGEY 281 >gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] Length = 279 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 108/282 (38%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + T+ AL FDQ+ I D Sbjct: 7 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 65 DCALDFWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ + D GP V MGNPH +FFVE D DL Sbjct: 125 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DAEAVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V ++M GG L ++W D V+++G + +EG L + Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274 >gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 129/287 (44%), Gaps = 28/287 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 ++F KM G GN + ++ S D ++LI + D Sbjct: 1 MKIEFTKMHGAGNDYIYVNTLKYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE CGN RCV ++L +K ET+ GI L + S+ Sbjct: 59 SMRIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P RD + N R V+MGNPH + F D+ Sbjct: 119 TVDMGAP-----------------RDIRTVDLGNGYLFREGTTVNMGNPHLVIFT-HDVS 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL S G + HP+F VN+ A++ ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 161 AIDLLSEGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAA 220 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + M GG L IE+ N+ + MTG A K ++G +++ Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTINMD 267 >gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] Length = 276 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 142/280 (50%), Gaps = 9/280 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VID + N++ I ++ + FDQ +L+ Q +D Sbjct: 1 MTLRFTKMHGLGNDFIVIDGINQNINLSPQQIAIMAQRNTGIGFDQCLLVESSQQEGIDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV CGNG RC+ F+ + T T + N D S+ VDM Sbjct: 61 NYRIFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L + IPL + ++ D+ + ++L +S+GNPHA+ V +L+ + Sbjct: 121 GIPKLAPRDIPL-LTQEQSDQYVLELSNNESIYL---HALSVGNPHAVLLVP-ELHRAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G ++ HP F E VN+ ++ + + + LR +ERG G T ACGS A A+ + Sbjct: 176 LSLGKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYY 235 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K ++ + V + GG LLI+W + N + +TG A +EG L Sbjct: 236 KMDKHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275 >gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] Length = 296 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 14/283 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F KM G GN + +D +S D ++ I A D Sbjct: 1 MKMKFTKMHGCGNDYVYVDCMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +R+ N D SE + CGNG RC+ +++ + ++ + T ET+ GI + ++ + Sbjct: 59 RMRMFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLA 118 Query: 117 SVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG+ ++ +P+ + +D+ GP F VSMGNPH + FVE D+ Sbjct: 119 EVDMGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVE-DV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G ++ P+F E N+ ++ + R WERG G T ACG+ ACA Sbjct: 178 ETAPVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYT 237 Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 L K + + V+ GG L + + + + + G A + Sbjct: 238 CVTLGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPATTVY 280 >gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] Length = 286 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +V+D +T D I + D I++ + D +RI Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFELTQDLIKKICDVHYGIGSDGILV--KYNSDVADFKLRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS------ISV 118 N DGSE + GNG+R +FL + ++ FT ET GI+ AK I+V Sbjct: 65 FNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKIITV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + K IP+ ++ ++ +G VS+GNPH + ++++L Sbjct: 125 DMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEFEV----SCVSVGNPHCVI-IKENLDEE 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T+R + +KM+GG L I ++ ++ MTGE ++ G + Sbjct: 240 KGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYIS 281 >gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] Length = 283 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN ++I A D +M++ + A D Sbjct: 3 IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKESSVA--DVQ 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117 ++ N DGSE CGNG+RC +F+ +K++ FT ET+ G+ + E + S+ Sbjct: 61 MKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVSSVR 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ +LD K IP+ + ++ I + V +G PH I F+E L Sbjct: 121 VNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI----STVLLGVPHTIIFME-TLDL 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G ++ H +F E N++ A++ + ++ +RTWERG G T ACG+ + + Sbjct: 176 DRVKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVCGIAN 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V++ GG L IE ++M G AK +G Sbjct: 236 HLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKGVY 277 >gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] Length = 276 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 105/282 (37%), Positives = 140/282 (49%), Gaps = 16/282 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + T+ AL FDQ+ I D Sbjct: 4 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T RG L A+ DG ++V+M Sbjct: 62 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ + + P V MGNPH I+FVE D DL Sbjct: 122 GAPQLLWSEIPLARAMET----------DSLPLEGTPSAVGMGNPHCIYFVE-DAEAVDL 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 171 AGRGAAVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V ++M GG L ++W D V+++G + +EG L + Sbjct: 231 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 271 >gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083] gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083] Length = 273 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 15/276 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + + F KM G+GN +V D R +T + A++ +DQ++ I + A D Sbjct: 6 GNKLPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTA--D 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RC+ + +R ++ + T RG+L A + G I V+MG Sbjct: 64 IELVFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMG 123 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P+ DW +PLAR D ++ P SMGNPH FFV +D+ +L Sbjct: 124 QPMTDWHEVPLAREMDTLEL----------PIEGKPTATSMGNPHCTFFV-NDVDAINLE 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + HP+F E N+ IA++ + +R WERGVG+T A GS++CA VA+ Sbjct: 173 AFGPTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAATRRGL 232 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + ++ + GG + I+ V MTG ++G Sbjct: 233 IGGSATLTLDGGEIRIKILPTG-VHMTGTWAHVFDG 267 >gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] Length = 267 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 27/284 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + +D N + AI D ++LI A D + Sbjct: 1 MKFVKMQGAGNDYVYVDCFKEKIKNPSEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 + N DGS CGNG RCV ++ +K ++FT ET GI + K+ + I+V Sbjct: 59 DMYNADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGIKYIKVEPKDGKAEYINV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176 +MG+ ++ + ++ I F+ V +GNPHA+++++ + L Sbjct: 119 NMGKAVITSEF-----------PEKILINGEEKEFIG----VDIGNPHAVYYIDSLEKLQ 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + DL G KH FS+ VN + +++ +R WERG G T ACG+ ACAS A+ Sbjct: 164 NMDLNRVGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACASAFAT 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + +V V +LGG L I +N+ ++M G+A+ + G+++ Sbjct: 224 MKKGACDTSVRVHLLGGDLDIS-LENDEIYMRGKAEYVFTGEIN 266 >gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 269 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 139/275 (50%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +VI+ +T I LS + FDQ++LI + D RI N Sbjct: 1 MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 +G+EV+ CGNG RCV FL + ++ T + + K D +I V+M EP Sbjct: 61 NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + I +++ K+ + F + +N +VS+GNPH + VE + + + G LL Sbjct: 121 EEISISK---KIVLNNFSVKLINKNLKC--SLVSIGNPHCVIKVES-INNAPVKKIGELL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + V Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V +LGG L+I+W N ++M G A ++G + I Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269 >gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] Length = 268 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 28/287 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 ++F KM+G GN + ++ + S D ++LI + D Sbjct: 1 MKIEFTKMQGAGNDYIYVNTLKYPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETG--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116 +RI N DGSE CGN RCV +++ +K ET+ GI L + S+ Sbjct: 59 SMRIFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG P D + N R V+MGNPH + F D+ Sbjct: 119 TVDMGAPC-----------------DIRTVDLGNGYLFREGTAVNMGNPHLVIFT-HDVS 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL S G + HP+F VN+ A+V ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 161 AIDLLSEGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAA 220 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + M GG L IE+ N+ + MTG A K ++G +++ Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTINMD 267 >gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] Length = 274 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 135/285 (47%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +DF KM+G GN +VI D+ L D I+L+ A D Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEETLAKNLCHRKFGIGADGILLVRKSSVA--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116 + IIN DGS CGNG+RC R++ + +K+ ET GI +A + I Sbjct: 59 MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEVLGI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +++MG K IPL+ + +K+ +I + G PH I ++ Sbjct: 119 TINMGNFSFQPKDIPLSIN-EKIINKDININSTEYKITSMKL----GVPHTIVMC--NID 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ G + KH +FSEG N++ V ++ ++TWERG G T ACG+ +CASVVAS Sbjct: 172 DVDVTE-GKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASVVAS 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V + GG L IE + VFMTG A+ +EGK++I Sbjct: 231 NTLGYIGNRCKVIVPGGELFIEV-KGDIVFMTGPAEIVFEGKINI 274 >gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] Length = 273 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R N + A D I+L+ + + D Sbjct: 1 MYFTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117 + IIN DGS CGNG+RC R++ + + ET GI +A +N I+ Sbjct: 59 MEIINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGE L+ + IP A +K+ + +I ++ G PH + + + Sbjct: 119 INMGEFSLNPEDIP-ANCKEKIMNKKIYINNKEYIINSMKL----GVPHTVVMCK--IND 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + K+ +F EG N++ V +++ ++TWERG G T ACG+ +CAS S Sbjct: 172 IDIQE-GKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V V + GG L I +N VFMTG A+ + G++++ Sbjct: 231 ILGYVGDKVKVLVPGGEL-ITELKDNKVFMTGPAEIVFTGEINL 273 >gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6] Length = 279 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 120/284 (42%), Gaps = 11/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM+G N + +D R G +NI + + + + D I+ I A D Sbjct: 1 MKLSFTKMQGCANDYIYLDCRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE Q CGNG+RCV +L + +++ +T G V+M Sbjct: 61 GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G +P M P+ +S+GNPH + V DD+ Sbjct: 121 GGYSAMAAALPAV----NMGEGPLVDCPLTVEGRTWRVACISVGNPHCVTVV-DDVDSLK 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G KHP F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 176 LEDIGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETWACGTGTCATVAALTEL 235 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L+I + MTG A EG ++ Sbjct: 236 GVCPAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279 >gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] Length = 290 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 133/282 (47%), Gaps = 16/282 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D +T + AL+ DQI+L+ D RI N Sbjct: 1 MHGAGNDFVVLDGVRQSIELTPERARALADRHFGIGADQILLVDAPLHPEADFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC VRF+ + +R E GI+ DG++SV+MG+ + Sbjct: 61 DGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQTRFEP 120 Query: 128 KLIPLARSFDKMD-------RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + A FD D D P+ +V++ NPHA+ V DD+ + Sbjct: 121 Q----ALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLV-DDVQTAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 176 GTIGPLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGIRRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W +N + M+G A + G++DI Sbjct: 236 LLDSPVLVHTRGGPLTITWS-DNSLRMSGPAVTVFAGQVDID 276 >gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 286 Score = 288 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 148/286 (51%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN + ++ ++ A + D ++LI + A D Sbjct: 1 MKFTKLHGLGNDYVYVNCFEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115 +R+ N DGSE ++CGNG+RCV +++ ++ +FT ET+ G + R Sbjct: 59 RMRVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQ 118 Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +++DMGEP + IP+ +++ + +G VSMGNPHAI FV D+ Sbjct: 119 VTIDMGEPRFERAAIPMTGIPEEQVREEGIEVGGTAF----TMTAVSMGNPHAILFV-DE 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+ +G ++ H F E N+ ++ + E + R WERG G+T ACG+ ACA+ V Sbjct: 174 VKEEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A+ KT R V+V + GG L IEW + +N V+MTG A + + G+ Sbjct: 234 AAHLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGEY 279 >gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] Length = 298 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 89/270 (32%), Positives = 120/270 (44%), Gaps = 15/270 (5%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +D R DAI + D ++ D +RI N DGSE + CG Sbjct: 26 VDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ-GCDYSMRIYNSDGSEPEMCG 84 Query: 79 NGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 NG+RC+ RF+ +S+ T+ G ++ + DG ++VDMG P L +P Sbjct: 85 NGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMGPPTLKGAEVPTKLP 144 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLA 188 + D V VSMGNPH + F E D + L G L Sbjct: 145 VNA-DGAVVKQPLVVDGRTWLVTCVSMGNPHCVTFGEQDAKGVIKHVNKLPLEKIGPLFE 203 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 H +F N +V S L +R WERG G T ACG+ ACA VVA+ + R V Sbjct: 204 HHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAAVLEGRAQRRCVV 263 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + GG L IEW + NNHV+MTG AK + G Sbjct: 264 DLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293 >gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] Length = 273 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G GN +V+D R A + + D I+ + + + + Sbjct: 1 MEFTKMTGNGNDFIVLDDRKGELIGKEKELAQKLCNRHFSIGADGILFVRES-NTNAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A+ Sbjct: 172 YDIEE-GKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE + +FM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273 >gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] Length = 273 Score = 288 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613] Length = 273 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] Length = 284 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 15/292 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN ++ID +G + + A++ D +MLI A D +R Sbjct: 1 MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLILPS--AKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + P+N R +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLSLVSMGNPHAIHFCTKSVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L+ H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 + V +K+ GG L +EW +N V++TG+A+ + TG+W+K Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEIIY-------TGEWLKDET 283 >gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] Length = 274 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID + IT+ + L+ DQ+++I +D Sbjct: 1 MKFTKMHGLGNDFVVIDAVTQNVRITASMVRRLADRKTGIGCDQVLVIEPPSAVDIDFNY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG+EV+ CGNG RC+ RF+ R +KS +T ++ ++VDMG Sbjct: 61 RIFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LD IP F + + VN R VSMGNPHA+ V D+ +A Sbjct: 121 PELDPPAIP----FQATEAASLYDIDVNGQVQR-IAAVSMGNPHAVLTVA-DINTATVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F VN+ ++ + LR +ERGVG T ACGS ACA+ VA+ Sbjct: 175 LGAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELV 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+V + G L I+W + + M+G AK + G++ I Sbjct: 235 DSPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274 >gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] Length = 273 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGNLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKIIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVMLPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 131/288 (45%), Gaps = 29/288 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + +D +S D ++LI D + Sbjct: 3 MKFTKMQGIGNDYVYVDCFKEQVKEPGKVSRFISDRHFGIGADGLILICPS--GKADCRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116 + N DGS+ CGNG+RCV ++ R++ T ET+ GI L K+ + SI Sbjct: 61 EMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVSI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGE L L + + ++ F+ + +GNPHA++++ D + Sbjct: 121 TVDMGEGTLTSDL-----------PEDIQVDGKDYRFVG----IDVGNPHAVYYM-DGID 164 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G H F + VN V + L++R WERG G T ACG+ A ASV+A Sbjct: 165 RLDLEKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVLA 224 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 S + + V + GG L+I +FMTG A + + G +DI Sbjct: 225 SILMGYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDIP 272 >gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131] gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131] Length = 279 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 108/282 (38%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 SS + F KM G GN +VID RG + T+ AL FDQ+ I D Sbjct: 7 SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + N DGS +CGN RCV +L + R T T RG L A+ DG ++V+M Sbjct: 65 DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPLAR+ + D GP V MGNPH +FFVE D DL Sbjct: 125 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DAEAVDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ Sbjct: 174 AGRGASVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V ++M GG L ++W D V+++G + +EG L + Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274 >gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065] Length = 273 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYFIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT] gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT] Length = 274 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +DF KM+G GN +VI D+ L D I+L+ A D Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRFGIGADGILLVRKSSVA--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116 + IIN DGS CGNG+RC R++ + +K+ ET GI +A + I Sbjct: 59 MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEVLGI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +++MG + IPL+ + +K+ +I + G PH + +++ Sbjct: 119 TINMGNFSFEPVDIPLSVN-EKIINKDVNINNKEYKITSMKL----GVPHTVVMC--NIH 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ G + K+ +FSEG N++ + +++ ++TWERG G T ACG+ +CASVVAS Sbjct: 172 DVDVVE-GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGSCASVVAS 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V + GG L IE D+ VFMTG A+ +EGK+++ Sbjct: 231 NTLGYVGNKCKVIVPGGELFIELKDD-VVFMTGPAEIVFEGKINL 274 >gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYIGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] Length = 275 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 98/278 (35%), Positives = 139/278 (50%), Gaps = 15/278 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 QS + F KM G+GN +VID R + + A++ FDQ+ +I ++A Sbjct: 9 QSIPLPFMKMHGLGNDFVVIDSRRTGALPDAATVAAIADRHRGVGFDQLAVILPGENA-- 66 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + N DGS +CGN RCV RFL ++ T +L A++ D V+M Sbjct: 67 DARLVFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRVNM 126 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+LDW IPLA D + +P MGNPH FFV D DL Sbjct: 127 GAPVLDWAGIPLAEDVDTLHL----------PVPGDPVATGMGNPHMTFFVP-DAAAVDL 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG HP++ + N+ + +V S + + LR WERG G+T A GS +CA+VVA+ Sbjct: 176 ERFGPAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAARRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R V V + GG L I+W ++ V+MTG ++G Sbjct: 236 LTGRRVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDGV 272 >gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] Length = 273 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-GTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 138/284 (48%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM +GN + +D D++ S A D ++L+ A D Sbjct: 1 MQFFKMHALGNNYVFVDTARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115 +RI N DGSE +SCGNG+RCV R+ R + F+ ET G++ A+ + D Sbjct: 59 GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +++DMGE + +P R D+ + R G + +VSMGNPH + V+ Sbjct: 119 VTIDMGEARFGTEAVP-YRGADRGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G ++ HP F E VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 174 DVDV-ERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 233 LAKKGLVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGTY 276 >gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] Length = 278 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 137/284 (48%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM +GN + +D D++ S A D ++L+ A D Sbjct: 1 MQFFKMHALGNNYVFVDTARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115 +RI N DGSE +SCGNG+RCV R+ R + F+ ET G++ A+ + D Sbjct: 59 GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRL 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +++DMG+P + + R D+ + R G + +VSMGNPH + V+ Sbjct: 119 VTIDMGKPRFGTEAV-TYRGSDQGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G + HP F + VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 174 DVDV-ERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 233 LAKKGFVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGTY 276 >gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] Length = 283 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + +S D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQELKNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DG+E + CGN +R V +++ + ET+ G+ L + +I Sbjct: 59 RMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L K+IP+ D + + VS GNPH FV D + Sbjct: 119 DIGEPRLSTKVIPINTEMDTFVDQPVQVLDR----TFHITAVSWGNPHCAMFV-DSVAEL 173 Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ S + L +R WERG G T CG+ +VV + Sbjct: 174 DVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTGCATAVVTAI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 K +R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70] gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70] Length = 284 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 19/284 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++S A+ + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE ++CGNG+RCV ++ +K +SF ET+ G++ A+ + ++++ Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNVTI 123 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ +++ + F + + VSMGNPH IF+V DD+ Sbjct: 124 DMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEIT----AVSMGNPHVIFYV-DDITT 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 KT N+ V + GG L+I W D +V MTG A+ G Sbjct: 239 LNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAETICTGVY 282 >gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 286 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +V+D +T I + D I++ + D +RI Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKICDVHYGIGSDGILV--KYDSDVADFKLRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS------ISV 118 N DGSE + GNG+R +FL + FT ET GI+ AK I+V Sbjct: 65 FNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKIITV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + K IP+ ++ ++ +G VS+GNPH + ++++L Sbjct: 125 DMGKAIFNAKQIPINTDKEEFISEKITVGDKEFEVN----CVSVGNPHCVI-IKENLDEE 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +R + +KM+GG L I ++ ++ MTGE ++ G + Sbjct: 240 KGLADREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYIS 281 >gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] Length = 271 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 85/270 (31%), Positives = 120/270 (44%), Gaps = 13/270 (4%) Query: 20 VIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 ++D R +A + D ++ + + D +RI N DGSE + C Sbjct: 1 MVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYTMRIFNSDGSEPEMC 59 Query: 78 GNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 GNG+RC RF+ SF T G+++ + DG + VDMG+PIL IP Sbjct: 60 GNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKL 119 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYDLASFGNLLAK 189 K + V+ VSMGNPH + F + + L+ G Sbjct: 120 PSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEH 178 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 H MF N V S L +R WERG G T ACG+ ACA VVA+ + R V Sbjct: 179 HEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVD 238 Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 + GG L IEW + +NH++MTG A+ + G Sbjct: 239 LPGGPLEIEWREDDNHIYMTGPAEAVFYGS 268 >gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] Length = 271 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 132/291 (45%), Gaps = 29/291 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN + ++ S D ++LI ++ D Sbjct: 1 MKVKFTKMQGAGNDYIYVNTFLYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115 +RI N DGSE CGN RC+ +++ ++ ET GI + + S Sbjct: 59 SMRIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVES 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMG P + P+ VSMGNPH + FV D + Sbjct: 119 VTVDMGIPT---GITPVDLG--------------EGYGYSQGIAVSMGNPHLVIFV-DQV 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G LL HP+F + VN+ A+V + +R WERG G+T ACG+ ACA+ VA Sbjct: 161 SDVRLSEVGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 + + R V M GG L ++W++ + H+ M G A K ++G+++ + K Sbjct: 221 AAFTGRCGRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIEYEPSK 271 >gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 284 Score = 284 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 44/301 (14%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59 ++F+K G+GN ++++ I D ++++ Sbjct: 1 MNFSKWTGLGNDFVLLEPGESLDFSSGFEQRIIKLCDRRFGIGADGVVVVTPMDGDGCLV 60 Query: 60 ----------------VDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFT 98 VD +RI N DGSE CGN RCV ++ L K F Sbjct: 61 LNGISEGPVSKAVANGVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFN 120 Query: 99 FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 T G++ DG + VDMG P I L + Sbjct: 121 LHTKSGLVRPALLDDGRVCVDMGLPRTFLGSIKLTADCYDFTAE---------------- 164 Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 VSMGNPHA+ FV DD+ L ++G++L F + N+ A+V + + +R WERG Sbjct: 165 TVSMGNPHAVIFV-DDIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERG 223 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+T ACG+ +CA++VA+ + V + GG L I+ ++ V MTG A++ ++G Sbjct: 224 CGVTMACGTGSCATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGT 283 Query: 279 L 279 + Sbjct: 284 I 284 >gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] Length = 273 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 133/284 (46%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + G L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf] gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf] Length = 273 Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 133/284 (46%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R A + + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F +L Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + G L IE +N +FM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKEN-SIFMKGPADICFRGEIDV 273 >gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] Length = 288 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +VID IT D I + D I++ + + D +RI Sbjct: 6 FVKSHGLGNDYIVIDSENITFEITQDFIKKICDVHYGIGSDGILV--KYPSSVADFKLRI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------RDGSISV 118 N DGSE + GNG+R +FL ++ FT ET G++ AK + I+V Sbjct: 64 FNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKVITV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + IP+ + ++ +G + VS+GNPH + ++ +L Sbjct: 124 DMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEYEVN----CVSVGNPHCVI-IKKELNEE 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ ++G+L+ HP+F +N+ + S + ++ WERG G T A GS++CA Sbjct: 179 EIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASVLVK 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +++KM+GG L I + ++ MTGE ++ G + Sbjct: 239 KGLAKNDITIKMIGGELKITVDKDWNIRMTGEVQEICRGIIS 280 >gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)] Length = 281 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 12/284 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLI-YFKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV +L ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG PI K IP +K F + + VV++GNPH + V ++L + Sbjct: 122 VDMGTPIFTPKNIPFITKTEK-----FFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA+V Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKL 279 + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYI 279 >gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] Length = 268 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 136/279 (48%), Gaps = 19/279 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M+G GN +VID R N T I D I+LI + + D + IIN Sbjct: 1 MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122 DGS CGNG+RC R++ + + + ET GI +A +N I+++MGE Sbjct: 59 ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L+ + IP A +K+ + +I ++ G PH + + D D+ Sbjct: 119 FSLNPEDIP-ANCKEKIMNKKIYINDKEYIINSMKL----GVPHTVVMCKTD--DIDIEE 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + K+ +F+EG N++ + +++ ++TWERG G T ACG+ +CAS S L Sbjct: 172 -GKYIEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYV 230 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG L+ E+ +N VFMTG A+ ++G+ ++ Sbjct: 231 GNKAKVFVPGGELITEF-KDNKVFMTGPAEIVFKGEFNL 268 >gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] Length = 278 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 135/275 (49%), Gaps = 9/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D ++ DQ++ + + DA +R Sbjct: 4 RFIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS + CGN MRCV +L R + ET+ GI+ + +I+VDMG P Sbjct: 63 IYNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQ 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IPL + + +D +G ++ +SMGNPH + V D ++LA G Sbjct: 123 WAGRAIPLDQDGEMIDA-PLEVGGQSYR----MTALSMGNPHGVVRVA-DAEGFELAKVG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H +F +N + +V S + +R WERG G+T ACG+ ACA+ VA R Sbjct: 177 PLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACMRQGWVER 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V + GG L I W +++ V M+G A + + G+L Sbjct: 237 DCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271 >gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 281 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 12/284 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLI-YSKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV +L ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG PI K IP +K F + + VV++GNPH + V ++L + Sbjct: 122 VDMGTPIFTPKNIPFITKTEK-----FFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA+V Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKL 279 + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYI 279 >gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] Length = 284 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 19/284 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A+ + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE ++CGNG+RCV +++ + +SF ET+ G++ A+ + ++++ Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNVTI 123 Query: 119 DMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ +++ + F + L VSMGNPH IF+V DD+ Sbjct: 124 DMGKPRLKRSEIPMVGPEAERVVAEPFEVDGQ----LYEITAVSMGNPHVIFYV-DDINQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G ++ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVAS Sbjct: 179 AAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 KT N+ V + GG L I W D +V MTG A+ G Sbjct: 239 LNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAETICTGVY 282 >gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] Length = 282 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 101/261 (38%), Positives = 142/261 (54%), Gaps = 7/261 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+GIGN +++D+RG + DA L+ + DQ++ + A + I N Sbjct: 17 MDGIGNAFIIVDLRGGG-TLGEDAARGLAEAAEGVRIDQVIGL---VAEGEGAAMTIFNR 72 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGN RC+ L F T G + A D ++VDMG P L W+ Sbjct: 73 DGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQD 132 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPLA + + +GP+++ L P VSMGNPH +FFVE D+ L FG L+ Sbjct: 133 IPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVE-DVAAQRLDRFGPLIEN 191 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F EG N+S+A V + LRTWERG GLT ACG+AACA++V++ +T R V Sbjct: 192 HPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADVT 251 Query: 250 MLGGGLLIEWHD-NNHVFMTG 269 + GG L I W + ++HV MTG Sbjct: 252 LPGGTLDISWREADDHVLMTG 272 >gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] Length = 288 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 148/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M + ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L +P+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEE 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVAAV 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] Length = 290 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D ++LI + A V Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 +RI N DGSE ++CGNG+RCV ++ + ++F ET+ G++ A+ S+ Sbjct: 62 KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVADGEVTSV 121 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +VDMGEP L+ IP+ +++ + F I + VSMGNPH IF+V DD+ Sbjct: 122 TVDMGEPRLERSAIPMLGPEAERVVAEPFAIAGGEYEIT----AVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ K P F EGVN+ V + L R WERG G+T ACG+ ACA+VVA Sbjct: 177 QKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 S KT V + GG L I W + V MTG A+ G + G+ Sbjct: 237 SVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288 >gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] Length = 293 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 42/296 (14%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76 +D R + DA+ + + D ++L+ D + I N DGS E Sbjct: 1 VDNRESPEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59 Query: 77 CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 CGNG+RC+ RF+ +S+ T G ++ DG + VDMG PIL+ IP Sbjct: 60 CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119 Query: 132 LARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------DLYHYDLAS 182 + + + L VSMGNPH + F E+ DL L Sbjct: 120 TLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTFGEEHEEHLFDLSTLPLEK 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG------------------VGLTAA 224 G L H F + N V SL L +R WERG G+T A Sbjct: 176 IGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLA 235 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 CG+ ACA+ VA+ + + V + GG L +EW ++ HV+M+G A+ + G L Sbjct: 236 CGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291 >gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 264 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 125/275 (45%), Gaps = 14/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+ ++ID RG + IT + AL F+Q++++ D D++ A + Sbjct: 3 LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + +CG+ R L S +T RG+ D S+SV+MG P Sbjct: 61 TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW+ IPLAR D + P SMGNPH FFV DDL D+A+ G Sbjct: 121 FDWQSIPLARELDSLHL----------PLPGTPAACSMGNPHCSFFV-DDLAPLDIATLG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + P+F N+ +V +++ LR WER + GS +CA+ V + Sbjct: 170 PQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLDS 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V GG + + W V + G + + G L Sbjct: 230 PVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264 >gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] Length = 280 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 126/289 (43%), Gaps = 24/289 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60 + + F KM G GN +VID A D ++ + S+ Sbjct: 2 TKIKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLHTSL 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK---ENRDGS 115 +RI N DGSE + CGNG+RC V++ M ET GIL + E+ Sbjct: 62 --HMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDGKTL 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG+P+ D K IP A + H V V+ G PHA+ FV DD+ Sbjct: 120 VKVSMGKPLFDPKKIP-AAGLNNFINKPLHGYEV--------TAVNTGVPHAVIFV-DDV 169 Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 DL + F +G+N++ + L +RT+ERGV G T +CG+ + AS Sbjct: 170 NAVDLMKVAPEIRYDLKTFPKGINVNFVQREGHN-LRVRTYERGVEGETLSCGTGSVASA 228 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L T +V GG L I + + +M G A+ +EG++D+ Sbjct: 229 AVARYLGYTRDETTVYTAGGQLNISFVSD-IAYMEGPAETVYEGEIDVD 276 >gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] Length = 290 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D ++LI + A + Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPL-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 +RI N DGSE ++CGNG+RCV ++ ++ ++F ET+ G++ A+ S+ Sbjct: 62 KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121 Query: 117 SVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +VDMGEP L+ IP+ +++ + F I + VSMGNPH IF+V DD+ Sbjct: 122 TVDMGEPRLERSAIPMVGPKAERVVAEPFTIAGGEYE----MTAVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ K P F EGVN+ V + L R WERG G+T ACG+ ACA+VVA Sbjct: 177 QKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 S KT V + GG L I W + V MTG A+ G + G+ Sbjct: 237 SVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288 >gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02] Length = 274 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 4/266 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R + ++ D I + + DQ+++I ++ +DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV FL+ +K T T G+L + + ++G P Sbjct: 61 FYNSDGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVLKSNILGSNLVETEIGTPKT 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPL+++ D I N+ V++GNPH +FFV+ D+ ++DL G Sbjct: 121 NWNEIPLSKNLDT-KNLNIKILSKNNTEHIGGAAVNVGNPHIVFFVK-DIENFDLKKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H +F E N+++A+V + + ++ WERG GLT ACG+AACAS +A + Sbjct: 179 EIENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKK 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271 ++ G L I N V M G Sbjct: 239 TDIEFKLGKLSIFIDAKNSVHMKGSV 264 >gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] Length = 293 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 42/296 (14%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76 +D R + DA+ + + D ++L+ D + I N DGS E Sbjct: 1 VDNRESAEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59 Query: 77 CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 CGNG+RC+ RF+ +S+ T G ++ DG + VDMG PIL+ IP Sbjct: 60 CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119 Query: 132 LARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------DLYHYDLAS 182 + + + L VSMGNPH + F E+ DL L Sbjct: 120 TLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTFGEEHEEHLFDLSTLPLEK 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG------------------VGLTAA 224 G L H F + N V SL L +R WERG G+T A Sbjct: 176 IGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLA 235 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 CG+ ACA+ VA+ + + V + GG L +EW ++ HV+M+G A+ + G L Sbjct: 236 CGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291 >gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] Length = 289 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ + + +S D ++LI D + Sbjct: 5 LRFTKMQGIGNDYVYVNGFEERVDNPGELAKRISDRHFGVGSDGLVLILPS--GVADLRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 R+ N DGSE + CGN RCV ++ + + ET GI + + +V Sbjct: 63 RMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVRGATV 122 Query: 119 DMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174 DMGEP+L LIP+ + + D RF PV VSMGNPHA+ F++ Sbjct: 123 DMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVEVGGRTYAVTAVSMGNPHAVVFMQG- 181 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL G L HP+F + N V S + +R WERG G T ACG+ ACA+ V Sbjct: 182 IDDLDLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTGACAAAV 241 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 AS T R++ V++ GG L I+W ++HV+MTG A ++G I Sbjct: 242 ASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDGVYFI 289 >gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] Length = 309 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 137/298 (45%), Gaps = 20/298 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----- 57 + KM G GN +VID ++ L+ DQI+++ Sbjct: 1 MKLRLTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAA 60 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR 112 +D RIIN DG EV+ CGNG RC VRF+ + R T GI+ + Sbjct: 61 AGPEGLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLP 120 Query: 113 DGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNP 165 DG + V+MGEP D +P + R + + + P+ +F R +VSMGNP Sbjct: 121 DGGVEVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNP 180 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ VE D+ + + G L+ HP F VN +V S + LR +ERG G T AC Sbjct: 181 HAVQVVE-DVKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLAC 239 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 G+ ACA+ VA + V V+ LGG L I W + VF+ G A + ++++ Sbjct: 240 GTGACAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPAVTVFSTEVELP 297 >gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT] gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT] Length = 284 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 15/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ R + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + P+N R +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + V +K+ GG L +EW ++ V++TG+A+ + TG+W+K Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281 >gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] Length = 300 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 31/301 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + +I D ++L+ + A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 I N DGS+ + CGNG+RCV +F+ + + + T +T G+ G + V Sbjct: 59 DIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----- 173 +MG+ + +P+ + + + VSMGNPHA+ F ++ Sbjct: 119 NMGKAEIVASKVPVIADTELAVGAPITVKDQAFTYT----AVSMGNPHAVVFTDENPALA 174 Query: 174 ----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 DL + G HP F + +N V ++++R WERG G T Sbjct: 175 NAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGSGETM 234 Query: 224 ACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ACG+ ACA+ VAS K R V+VK+LGG L+IEW + N V+MTG A +EG+LD Sbjct: 235 ACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFEGELD 294 Query: 281 I 281 + Sbjct: 295 L 295 >gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1] gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1] Length = 289 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 15/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN+ +V+D ++TS++I + D ++L D +RI Sbjct: 6 FVKSHGLGNEYIVLDDENIDFSLTSESIKTICDVHFGIGSDGVLL--KVHSEKADFGLRI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GSISVD 119 N DGSE + GNG+R ++L ++ FT ET G++ A+ I+VD Sbjct: 64 FNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLITVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +G+ + IP++ D+ ++ + VS+GNPH + V D L Sbjct: 124 IGKATFKTEDIPVSIEKDECIGEKIVVDDREFEIN----CVSVGNPHCVIIV-DKLDDEI 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + +G L+ H +F N+ + S + +++R WERG G T A G+++ A Sbjct: 179 VKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVMVKR 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T+R V+V M GG L I + ++ MTGE ++ G L Sbjct: 239 GITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVLS 279 >gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73] gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas albilineans] Length = 286 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 130/281 (46%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM+G GN +V+D+R + A+ DQI+ I ++A+ Sbjct: 8 RGARLRFTKMQGAGNDFVVLDLRDGSSPPDAALAVRLADRHFGIGCDQILTIEPARNAAA 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISV 118 A RI N DGS CGNG RCV +L F E+ G + D +V Sbjct: 68 LASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQFAV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + +PL D +D + + F VSMGNPHA+ V + Sbjct: 128 AMGVPRFAPEDVPLIGFPDALDEYLLPMHGESVRF----GAVSMGNPHAVLEV-GLVDAA 182 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL +H F + VN+ +V + L LR +ERGVG T ACGS ACA+ Sbjct: 183 PVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAVLMQ 242 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 + +R V V + GG L ++W H + M+G A ++G+ Sbjct: 243 RGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGE 283 >gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS] gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS] Length = 284 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 15/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +ML+ A D +R Sbjct: 1 MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLLLPS--AKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D P+N R +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFL 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+L+ H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + V +K+ GG L +EW ++ V++TG+A+ + TG+W+K Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281 >gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] Length = 288 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M + ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L +P+ + R+ F ++F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTG----VSMGNPHAVIFV-DDVEE 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAV 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila] gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila SB210] Length = 310 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 31/307 (10%) Query: 6 VDFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 + F K G+GN ++ID R G D + D +M + + + Sbjct: 3 LHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENESEK 62 Query: 59 S------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK 109 D +I N DG E Q CGNG+RC R++ + +K T G+L + Sbjct: 63 DKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLECE 122 Query: 110 ENRDGSISVDMGEPILDWKLIP----------LARSFDKMDRDRFHIGPVNHLFLRNPFV 159 E G ++G+ + IP + + H ++HL +V Sbjct: 123 ELSLGLYRTNIGKATAEISKIPANPFNSDAESVVINQPLKINQNLHQQNLSHLSEETHYV 182 Query: 160 --VSMGNPHAIFFVEDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWE 216 V++GNPH + +V DD+ ++ G L + +F + VN+ ++ +L +R +E Sbjct: 183 TFVNVGNPHCVIYV-DDVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMRVYE 241 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEW 275 RG G T ACG+ ACASV A K + + V + GG L I ++ + + G A K + Sbjct: 242 RGCGETMACGTGACASVFAGILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPAAKVF 301 Query: 276 EGKLDIK 282 EG + Sbjct: 302 EGSIQFP 308 >gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1] gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1] Length = 284 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 146/290 (50%), Gaps = 15/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + P+N R +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + V +K+ GG L +EW ++ V++TG+A+ + TG+W+K Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281 >gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] Length = 288 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 19/287 (6%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M + ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ DG ++ + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L +P+ + R+ F ++F VSMGNPHA+ FV DD+ Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTG----VSMGNPHAVIFV-DDVEE 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAV 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285 >gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13] gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13] Length = 272 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 16/283 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-D 61 + F KM+ IGN +VI+ +++ I L+ FDQ+++I + + D Sbjct: 1 MKIPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC ++ + T ET+ G + + D I+VD Sbjct: 61 YKYRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTK-DDELIAVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG + K P D+ I + + +GNPH +FFV D + D Sbjct: 120 MGTYSIGMKNEPSLFFDIFSDKKTEEIQGI---------YIDVGNPHIVFFV-DSVKDVD 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G + +F VN+ + + + L +ERG GLT CGS ACA+ +A+ L Sbjct: 170 AVRTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHL 229 Query: 240 HKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + V V M GG + + +NH+ + G+A +EG +++ Sbjct: 230 KKVEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272 >gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] Length = 290 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 23/292 (7%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + +D+ + + + + A++ D ++LI + A + Sbjct: 6 FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPL-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 +RI N DGSE ++CGNG+RCV ++ ++ ++F ET+ G++ A+ S+ Sbjct: 62 KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121 Query: 117 SVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +VDMGEP L+ IP+ +++ + F I + VSMGNPH IF+V DD+ Sbjct: 122 TVDMGEPRLERSAIPMVGPKAERVVAEPFAIAGGEYE----MTAVSMGNPHVIFYV-DDI 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L+ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVA Sbjct: 177 QKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 S KT V + GG L I W + V MTG A+ G + G+ Sbjct: 237 SVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288 >gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. B100] gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris] Length = 284 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 126/282 (44%), Gaps = 9/282 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + + + F KM G GN +V+D+R + L+ DQI+ I + A Sbjct: 5 VHTGRLRFTKMHGAGNDFVVLDLRNGTPPPDASLAARLADRHFGVGCDQILTIETPRSAE 64 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117 A RI N DGS Q CGNG RCV +L + FT ++ + G+ S Sbjct: 65 AVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAGTYS 124 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 125 VAMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDA 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G LL ++ F E VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 180 APVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAVVLM 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + R V V + GG L I W V M+G A ++G+ Sbjct: 240 HRGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGE 281 >gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] Length = 1355 Score = 278 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 94/299 (31%), Positives = 148/299 (49%), Gaps = 25/299 (8%) Query: 1 MQSSMV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 M++ + +F KM G GN + D HD +A++ +D + +I Sbjct: 1064 MRTEKIKANFTKMHGCGNDYIYFDCF-QHDINNPEALSVRLSDRHYGIGGDGVILVCPSD 1122 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK----E 110 D +R+ N DGSE + CGNG+RCV +FL ++ T ET+ GI + Sbjct: 1123 VADGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYND 1182 Query: 111 NRDGSISVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++ VDMG+ L LIP+ S D++ + + V + + VSMGN Sbjct: 1183 RKVCAMKVDMGKAELTPALIPVDASKLPDPKADRIVNAPYTVDGVEY----HVTCVSMGN 1238 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH + F ++D+ D+ G +F E VN RV +L +R WERG G T A Sbjct: 1239 PHCVVF-KNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETWA 1297 Query: 225 CGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CG+ ACA+ VA+ K + ++VK++GG L+I + D+ V+MTG A +EG ++I Sbjct: 1298 CGTGACAAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDD-TVYMTGNAVTVYEGVVEI 1355 >gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545] Length = 262 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 19/262 (7%) Query: 37 ALSTDDNTHFDQIMLIHDFQDASV--------DAFIRIINCDGSEVQSCGNGMRCVVRFL 88 + D +++ A D +R+ N DG+E + CGNG+RC+ F+ Sbjct: 1 MCDRNFGIGADGVIVAMPKGSAEYPGRVVEEEDYAMRMFNSDGTEPEMCGNGIRCLANFV 60 Query: 89 T--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 +++ T+ G++ + DG ++VDMG P L +P + + D Sbjct: 61 AAIDDADPRAYKVGTLAGLIQPECKPDGQVAVDMGVPTLTPADVPTKLAATE-DGAAVKS 119 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNL 199 VSMGNPH + F + + DLA+ G H F N Sbjct: 120 QMTVDGATWLATAVSMGNPHCVTFGREKGDEKGLAVDDMDLAAIGPSFESHETFPARTNT 179 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 V + + +R WERG G T ACG+ ACA+VVA +T+R +V++ GG L IEW Sbjct: 180 EFVEVVRRDYVKMRVWERGAGATLACGTGACATVVAGVLEGRTDRKCTVELPGGPLEIEW 239 Query: 260 HD-NNHVFMTGEAKKEWEGKLD 280 + ++ V MTG A+ + G++D Sbjct: 240 RESDSRVIMTGPAELVFYGEID 261 >gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519] gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii] Length = 281 Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN ++ + G + + + A D +M D + Sbjct: 1 MLFWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACEKSTS--CDIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 N DGS+ CGNG+RC +F+ + + SF E L+ + + + V Sbjct: 59 VYYNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P L+ KLIP + + + I L V +G PH + F EDD+ Sbjct: 119 EMGLPTLEPKLIPALTDYTEFINEEIVIEDRKFL----ASAVLIGVPHLVIF-EDDISLQ 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G+ L ++ +F + +N++ ++ ++ ++T+ERG G T ACG+ +S + Sbjct: 174 ELDYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIAN 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L N V V GG + IE ++MTG A+K +G++D Sbjct: 234 KLGLVNDKVKVSSPGGEVEIEILKEK-LYMTGPAQKICDGRVD 275 >gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] Length = 277 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMR---GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R +S A+ + + D ++++ + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVA--DI 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RDGS 115 + N DGS CGNG+RC RF+ + + F +T+ GI N + Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVIN 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMGE IP+A +K ++ HI + + MG PH I FV D+ Sbjct: 119 IKVDMGEGSFKTSDIPMATDKEKFIEEKVHILDRDF----TMTSMLMGVPHTIVFV-DEF 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G + +F E N++ +V ++++ TWERG G T CG+ A+ V Sbjct: 174 DLEMIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTAAAVV 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L KT ++++V GG + I+ + VFMTG A K EG L++ Sbjct: 234 CNYLEKTEKSMNVTSKGGTVKIDI--GDKVFMTGPAVKICEGYLEV 277 >gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 275 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + + D ++ S A+ D ++++ Q A A + Sbjct: 1 MKFYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVAE--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118 IIN DGS CGN +RC +++ + + F+ ET G+ + ++ + + V Sbjct: 59 IIINADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL+ D +D + G V +G PH I F ++ Y Sbjct: 119 YMGKPSYRAEDIPLSHGEDFIDSEITCNGK-----TYKATTVLVGVPHTIIF--ENTDEY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L KH +F+EG N++ ++ + + TWERG G T ACG+ ASVV + Sbjct: 172 VVNEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231 Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L N + + VK GG L+IE + ++ V+M G A+ +EG Sbjct: 232 LGLVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEGN 272 >gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] Length = 284 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 88/291 (30%), Positives = 149/291 (51%), Gaps = 18/291 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + F KM GIGN + +D+ D A + D +++I + A Sbjct: 1 MQIAFTKMHGIGNSYIYLDLFQHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA-- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDG 114 D +R+ N DGSE +CGNG+RCV +++ R ++++ T ET GI+ V ++NR Sbjct: 59 DCGMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVI 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG+P+L K IP+ + +++ + P L + + +GNP+A+FFV + Sbjct: 119 EVIVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLV---TALFLGNPNAVFFV-NA 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L + G+ +A F N+ + ++L WERG G+T ACG+ ACA+VV Sbjct: 175 IEQAPLRTLGD-IANDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVV 233 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A+ + V++ GG L+I W DN+H++M G A+ +G + + Sbjct: 234 AAILNGFCQKGEEIVVQLSGGDLVIRWADNDHIWMRGPAEFIADGIYEFLS 284 >gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] Length = 268 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ DG ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L+I Sbjct: 181 EFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] Length = 274 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 20/283 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++F KM+G+GN ++I D ++ + D +++I A DA Sbjct: 1 MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKICNRRFGIGADGLVIIRKSNIA--DAK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116 + IIN DGS CGN +RC ++L +++ + ET GI + N+ S+ Sbjct: 59 MVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKVESV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ D K IPL + + + + I + + MG PH I +D Sbjct: 119 KVNMGKGSFDGKDIPL-NNKNSLINEVIKIKEKEYKLT----ALLMGVPHTILINNND-- 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 YD+ G + K+ +F EG N++ +V + +++++TWERG G T ACG+ CASVVA Sbjct: 172 EYDVIE-GKDIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASVVAL 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + V+V+ LGG L +E NN V+M G A+ +G Sbjct: 231 KKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAEFICKGNY 272 >gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] Length = 268 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ +DG ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEETIFTIETLAGIVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L+I Sbjct: 181 EFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 273 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + + D ++++ +++S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 IIN DGS CGN +RC +++ + + F ET GI L+ K+ + V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL + D++ IG + N + MG PH I F + Y Sbjct: 119 YMGKPSFNGSDIPL-NNLDELIDQEIAIGKEKY----NMTSLLMGVPHTIIFEKH--KEY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + K +F +G N+ +V + + TWERG G T ACG+ CASVV + Sbjct: 172 EVQE-GENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + VK GG L++E ++ V+M+G A+ +G + Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271 >gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42] gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42] Length = 284 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + D+ D + L VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTIDETFVFGETELS---GTAVSMGNPHIVFPVA-DINQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EGVN+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] Length = 280 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 133/284 (46%), Gaps = 21/284 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 ++F KM G GN +V+D + + A+ D + + A D Sbjct: 5 LEFTKMHGNGNDFVVVDEFHEEVVPEEHKPQFVRAVCKPRFGVGADGAIFVQPSSVA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKE---NRDGSIS 117 A R N DGSE CGNG+RC R++ + F ET+ GI + + + + Sbjct: 63 AKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVKDGEYWVR 122 Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P+ + IP A +FD + D F + + + V+ G PHA+ FV D Sbjct: 123 VDMGKPVFEPAKIPAAGGTFDGVWHDTFELFGRK----VDVYAVNTGVPHAVVFV--DSL 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ + + F EG N++ AR+ S +++RT+ERGV T +CG+ + A V Sbjct: 177 DFDILE-ARKIRYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCGTGSVAVVAV 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L VK GG L IE D FMTG+A + ++G L Sbjct: 236 ASKLGLIEPEAIVKTKGGVLRIEVRD--TAFMTGKATRVFDGVL 277 >gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] Length = 273 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + + D ++++ + +S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 IIN DGS CGN +RC +++ + + F+ ET GI L+ K+ + V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL + D++ IG + N + MG PH I F ++ Y Sbjct: 119 YMGKPSFNGSDIPL-NNLDELIDQEVAIGKEKY----NMTSLLMGVPHTIIF--ENHKEY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + K +F +G N+ +V + + + TWERG G T ACG+ CASVV + Sbjct: 172 EVQE-GENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + VK GG L++E ++ V+M+G A+ +G + Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271 >gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] Length = 280 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVI--DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V F KM+G GN +V+ D + ++ A D +++++ A D Sbjct: 3 VQFKKMQGTGNDFIVVKYDDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIA--DIR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRDGSIS 117 + N DGS CGNG+RC +F+ + K F+ ET+ GI ++ ++ S+ Sbjct: 61 MDYYNSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGTVKSVE 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ D + IP+ + +G + + VSMG PH I F E L Sbjct: 121 VNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFIIT----AVSMGVPHVIIFTE-KLDL 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + FG L+ KH +F + N++ +++ +RTWERG G T ACG+ + ++V + Sbjct: 176 EQIKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTSAVAVAN 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N V+V++ GG + I+ ++ ++FM G A+ G+ Sbjct: 236 KLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277 >gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] Length = 287 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 20/288 (6%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + F+KM GIGN +ID + +A L D ++ + A D Sbjct: 7 LKFSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFVVPSDVA--D 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115 R+ N DGSE + CGNG+RC F+ +++++ T ET GI + ++ Sbjct: 65 IGYRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIEITVEDGEPVL 124 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG+ IP+ D+ + V++GNPHAI FV++ Sbjct: 125 FKVNMGKSTFKVPEIPMIADTDEFVDGDLDVIDT----TFKATCVNVGNPHAILFVDNVD 180 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G + H +F E +N+ V S +RTWERG G+T ACG+ A ++ +A Sbjct: 181 DIDI-DKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACGTGATSTALA 239 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKLD 280 L ++ V + + GG L E + ++ + FM G A + ++ Sbjct: 240 GVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPAALVFNAEIQ 287 >gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 268 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ DG ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L+I Sbjct: 181 EFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] Length = 283 Score = 275 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 124/280 (44%), Gaps = 9/280 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S+ + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 STALRFSKMHGAGNDFVVIDLRDGTAPPTPELAARLADRHTGVGCDQILTIEAPRADGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + F ++ K DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVFVIDSPLASHEVKVLGDGQFAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL + + + F VSMGNPHA+ V + Sbjct: 126 MGVPAFEPSNVPLVGFAHPREEYLLPLQGESVRF----AAVSMGNPHAVIEV-GLIDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293] gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293] Length = 268 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 16/272 (5%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 + + R +++ A + + D ++LI A V +R+ N DGSE +SCGN Sbjct: 1 MFEERIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGN 58 Query: 80 GMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLA 133 G+RCV ++ ++ FT ET+ GI+ A+ +G ++ +DMG P L IP+ Sbjct: 59 GLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPML 118 Query: 134 RSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + R+ F + F VSMGNPHA+ FV DD+ L + G +L H M Sbjct: 119 GEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEM 173 Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKM 250 F E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + Sbjct: 174 FPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHL 233 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 GG L+I W + +V M G A+ G + K Sbjct: 234 AGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 265 >gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] Length = 241 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 126/245 (51%), Gaps = 9/245 (3%) Query: 40 TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSF 97 FDQ++L+ + VD RI N DGSEV+ CGNG RC RF+ + +K Sbjct: 3 RHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQI 62 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 ET GI+ + DG ISVDMG P L + IP F ++ + + V+ + Sbjct: 63 RVETKGGIIELEIRSDGQISVDMGPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA 118 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 VSMGNPHA+ V DD+ + + + G + +P F VN+ V + LR WER Sbjct: 119 -AVSMGNPHAVLRV-DDINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWER 176 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276 G G T ACG+ ACA+ VA+ + + + + GG L IEW H V MTG A + +E Sbjct: 177 GAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYE 236 Query: 277 GKLDI 281 G++ + Sbjct: 237 GQVRL 241 >gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] Length = 275 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 1 MHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 61 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + ++ + L VSMGNPHA+ V D + + Sbjct: 121 PVFEPERIPLSGFPNALGE---YVLSLQGEVLCCG-AVSMGNPHAVVEV-DLIDVAPVER 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V + Sbjct: 176 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 235 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G A+ ++G Sbjct: 236 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 272 >gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 268 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ DG ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FVE D+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFVE-DVEKAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + E ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L+I Sbjct: 181 EFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8] gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8] Length = 275 Score = 274 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 119/283 (42%), Gaps = 21/283 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN ++ID A D I+ + D Sbjct: 3 IPFVKLHGNGNDFVLIDEYAQMIIPDDLKGQFAALYCERRFGIGADGILFLAKPTR-KAD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---SIS 117 +RI+ D SE + CGNG+RC+ ++ +++ T +T G L +G +++ Sbjct: 62 IRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTVT 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + MGEP K IP + ++ + V+ G PHA+ DDL Sbjct: 122 IGMGEPKFKRKDIPATGKGEYHEQ----------IGGFEVHAVNTGVPHAVILT-DDLGS 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 DLA+ + HP F G N++ + T +S+ +RT+ERGV T +CG+ A AS Sbjct: 171 IDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAAVV 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N V V+ GG L I + M G A + G + Sbjct: 231 HHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSGLI 273 >gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271] gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271] Length = 268 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ +G ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L+I Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] Length = 275 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%) Query: 5 MVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ F K GIGN ++ + + + A+ + D +M+ + D Sbjct: 1 MLKFEKYHGIGNDFIIFREEEVAGLDYSELAMKVCHRNFGIGADGMMV--AAKSEKADIR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-ILVAKENRDGSI--SV 118 + N DGSE CGNG+RC F+ + +++ ET+ G +L+ E +DG V Sbjct: 59 MIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNMLIKTEEKDGRYLARV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PI + IP++ S ++D ++ + + MG H++ FV DDL Sbjct: 119 NMGMPIFETDSIPMSVS----EKDYIERKIESYDREFSISALFMGTTHSVTFV-DDLETL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ +G L +P+F N++ A+ S + +D++TWERG G T ACG+ ACA VV Sbjct: 174 DIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWERGAGYTFACGTGACAVVVIGNL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + ++ V V + GG L IE D+ VFMTGE++K EG Sbjct: 234 TGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAEG 271 >gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07] gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07] Length = 285 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 18/286 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 9 LMKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--D 66 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N S Sbjct: 67 VEMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINS 126 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG+ K +P+ + ++ ++ + MG PH + V D+L Sbjct: 127 IRVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSML----MGVPHTVVIV-DEL 181 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 182 DVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIV 241 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 242 CNLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 285 >gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 267 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 14/280 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+ ++ID RG D IT+ L + F+Q+ +++D ++A+ A Sbjct: 1 MLLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLGNRHTGIGFNQLAVVYDCEEAA--A 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N +G+ + +CG+ R V L + S T RG+L +SVDMGE Sbjct: 59 RISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+W +PL+ + D + +P SMGNPH FFV DD+ D+A Sbjct: 119 PSLEWTAVPLSDAMDTL----------TLPVEGSPAACSMGNPHCTFFV-DDIAAVDVAG 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F N+ +V + LR WERG G+ GS C +VV Sbjct: 168 LGPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRGLL 227 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG + ++W V +TG + +G + Sbjct: 228 DATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGSAYVP 267 >gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208] Length = 284 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + ++ + + L VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEEERTINETFVFGETELS---GTAVSMGNPHIVFPVA-DISQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23] gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23] gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 284 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + ++ + L VSMGNPHA+ V D + + Sbjct: 130 PVFEPERIPLSGFPNALGE---YVLSLQGEVLCCG-AVSMGNPHAVVEV-DLIDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281 >gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 268 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ +G ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L+I Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265 >gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] Length = 273 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + + D ++++ +++S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSENSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 IIN DGS CGN +RC +++ + + F ET GI L+ ++++ I V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEYIKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + + I L + +D++ N + MG PH I F D Y Sbjct: 119 YMGKPSFNGRDISLNNLEELIDKEVVIDKEK-----YNMTSLLMGVPHTIIFERD--KEY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + K +F EG N+ +V + + TWERG G T ACG+ CASVV + Sbjct: 172 EVQE-GEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N + VK GG L+IE ++ V+M+G A+ +G + Sbjct: 231 LGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAEFICKGNI 271 >gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] Length = 272 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI D+ + + + D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K+ T G+ L + ++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP A +++ + +G N + MG PH I F E Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 171 YPIEC-GREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270 >gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63] Length = 276 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N SI Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + MG PH + V D+L Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSML----MGVPHTVVIV-DELD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 174 VEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276 >gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] Length = 272 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI D+ + + + D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K+ T G+ L ++++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIEKDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP A +++ + +G N + MG PH I F E Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + FG + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 171 YPIE-FGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270 >gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] Length = 283 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 124/280 (44%), Gaps = 9/280 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTVPPTPELAARLADRHTGVGCDQILTIEAPRAEGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + +F ++ K DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHQVKVLGDGHYAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL + + F VSMGNPHA+ V + Sbjct: 126 MGVPAFEPANVPLVGFAHPREEYLLPLQGETVRF----AAVSMGNPHAVIEV-GLIDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 VERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] Length = 281 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 140/290 (48%), Gaps = 21/290 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQD-ASV 60 S+M+ F KM G GN + ++ A A S D ++LI D + Sbjct: 2 STMIHFTKMHGAGNDYIYVNTLSEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDTSQA 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----- 113 D + I N DGSE CGN RC+ ++L + +K ET+ GI + + D Sbjct: 62 DFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDANNHV 121 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S++VDM EP + +P + + + VSMGNPH + FV D Sbjct: 122 ASVTVDMLEPQFN---VPEQFTGNHPSLSAI-------PGAQEGIFVSMGNPHYVIFV-D 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D++ DL G L F + N+ A++T+ +L R WERG G+T ACG+ ACA+ Sbjct: 171 DIHAIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMACGTGACATA 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 A+ +T R V++ M GG L +EW DNNH++++G A +EG + + Sbjct: 231 TAAIQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALP 280 >gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26] gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932] gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55] gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34] gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79] gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291] gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58] gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291] Length = 276 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N SI Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + MG PH + V D+L Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSML----MGVPHTVVIV-DELD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 174 VDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGVLEV 276 >gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 8/273 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D R + + ++ + H FDQ++++ DA D +R+ N Sbjct: 1 MNGAGNAFIVLDRRDAS-GPAAYGESGIAALLDVHPFDQLIVLDPSSDADAD--LRVWNR 57 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DG EV +CGNG R L + +F + G + A+ DG+ VD+G LDW+ Sbjct: 58 DGGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWRD 117 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D M D F + + L P VSMGNPH +F V DD+ LA G + Sbjct: 118 IPLSLPMDTMRLD-FGVNLPDGGRLEGPGAVSMGNPHVVFAV-DDVLALPLAEIGPCIEH 175 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 P+F + VN A+V + + L+ +ERG GLT ACG+ ACA++VA NR ++ Sbjct: 176 DPLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVALHRQGLVNREAVIE 235 Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 GG L + W HV ++G E +LD++ Sbjct: 236 ADGGKLPVRWDTEGHVHLSGPV--VLERELDLR 266 >gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] Length = 268 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ +G ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L+I Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWTEEGNVLMKGPAEVICHGVYEYK 265 >gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] Length = 284 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 19/285 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE ++CGNG+RCV ++ + + F ET+ G++ A + G ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG PIL + IP+ S D++ + G VSMGNPH +F+V +D+ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER----LKGTAVSMGNPHVVFYV-NDIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 KT + V + GG L I W + +V MTG A +G Sbjct: 238 VLNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDGTY 282 >gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630] gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42] gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255] gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile] Length = 276 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N SI Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + MG PH + V D+L Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSML----MGVPHTVVIV-DELD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 174 VDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276 >gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 295 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + D + + F+Q+ +I D DA+ Sbjct: 29 IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVISDGDDAAA 88 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 R N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 89 RVAFR--NPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P LDW+ +P++ + D + P SMGNPH FFV DD+ D+ Sbjct: 147 GAPRLDWQDVPVSEAVDTLVL----------PLPGAPAACSMGNPHCTFFV-DDVAALDI 195 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + V V GG + ++W VF++G + G Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFGGV 293 >gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] Length = 289 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 19/290 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M++S F K G+GN + +D + +T+ I A+ + D I+ + ++A Sbjct: 1 MRNS---FFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA- 56 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE--NRDGS 115 D +RI N DGSE + GNG+R FL + + KR+SF+ ET G++ + +R+G Sbjct: 57 -DFGLRIFNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVETKGGLVHVELTLDRNGQ 115 Query: 116 I---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +VDMG + +P ++ + F VS+GNPH + F + Sbjct: 116 VNGATVDMGRASFRPRDLPCTIKAPELIMQPIKAVGQSLRFTG----VSVGNPHCVVFRD 171 Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 DL G L HP F + N+ +A T ++ + WERG G T A GS+AC Sbjct: 172 RGGSWTREDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSAC 231 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A A L V V GG L I + + G + ++G+ Sbjct: 232 AVASAGVRLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRFS 281 >gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] Length = 272 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI D+ + + + D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K+ T G+ L + ++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP A +++ + +G N + MG PH I F E Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 171 YPIEC-GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270 >gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 268 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +++ A + + D ++LI A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139 + ++ FT ET+ GI+ A+ +G ++ +DMG P L IP+ + Sbjct: 66 YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F + F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L+I Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWIEEGNVLMKGPAEVICHGVYEYK 265 >gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] Length = 277 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R + + A A + D ++++ + A D Sbjct: 1 MKFWKLHGIGNDFVAIDGRYDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116 + N DGS CGNG+RC V+F+ +++ F T+ GI K N +DG SI Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P++ +K + + + + MG PH + FV D+L Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITVLDREYTVT----SILMGVPHTVIFV-DELS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ +G + KH +F + N++ ++ +++ ++T+ERG G T CG+ A V+ S Sbjct: 174 MEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACVMVS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K ++V+V GG + I+ +N +MTG A K EG L++ Sbjct: 234 NYLGKVGKSVNVISEGGSVRID-LENGFAYMTGPAVKICEGNLEV 277 >gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 284 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + + F ++ + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + ++ + LR VSMGNPHA+ + D + + Sbjct: 130 PVFEPERIPLSGFPNALGE---YVLSLQGEVLRCG-AVSMGNPHAVVEI-DLIDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281 >gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101] gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101] Length = 272 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI D+ + + + D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K+ T G+ L + ++ +I+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP A +++ + +G N + MG PH I F E Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 171 YPIEC-GKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270 >gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] Length = 276 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 127/285 (44%), Gaps = 23/285 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M++F K+ G GN +VID + A+ D I+ I Sbjct: 1 MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYI--SGSDKA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG---S 115 D +R++ D SE + CGNG+RC+V++ + T ETI + K +D Sbjct: 59 DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118 Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V+MG+P+ IP S D H PV VV+ G PHA+ FVE+ Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHDYPV--------SVVNTGVPHAVIFVEN- 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 +++ + + F G N++ R+ S + + +RT+ERGV T +CG+ + AS Sbjct: 170 -LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASA 228 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 S L K N V V GG L IE ++M G A+ ++G Sbjct: 229 YISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKGV 273 >gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] Length = 283 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 121/280 (43%), Gaps = 9/280 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTAPPTPELAAQLADRHTGVGCDQILTIEAPRAEGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + F ++ + DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRFVIDSPLASHEVEVLGDGQFAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL + + + F VSMGNPHA+ V + Sbjct: 126 MGVPAFEPANVPLVGFAHAREEYLLPLQGESVRF----AAVSMGNPHAVIEV-GLIDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F VN+ A+V LR ERGVG T ACGS ACA+ V Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280 >gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13] gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13] Length = 272 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI D+ + + + D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K+ T G+ L + ++ +I+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP A +++ + +G N + MG PH I F E Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 171 YPIEC-GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270 >gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3] Length = 284 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + D+ + + L VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTINETFVFGETELS---GTAVSMGNPHIVFPVA-DISQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] Length = 267 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 124/283 (43%), Gaps = 28/283 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G GN +++D R + I L D ++++ Q + Sbjct: 1 MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQS-GANFR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R N DG E + CGNG RC RF + +FET+ G + A+ D ++ + M E Sbjct: 60 MRYYNADGGEAEMCGNGARCFGRFAQRVSGQAGDISFETMAGKITAQFI-DNNVRIQMSE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + L S D + V+ G PHA+ FV DDL D+ Sbjct: 119 P----HSLRLNESLDSGGE------------VLTVHSVNTGVPHAVVFV-DDLEQVDVRR 161 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 FG L H F +G N + + +++ +RT+ERGV T ACG+ A + L Sbjct: 162 FGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHELT 221 Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGK 278 V+VK+ GG L I + + V+ +TG A ++G+ Sbjct: 222 GAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264 >gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 284 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R +D L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + G +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGMPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281 >gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 216 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 105/222 (47%), Gaps = 9/222 (4%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF L ++ T G +V D + V+M Sbjct: 1 HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 60 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + +P F ++ +I + VVSMGNPH + V D++ + Sbjct: 61 GEPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAV 114 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 115 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 174 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 175 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 216 >gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] Length = 284 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 19/283 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE ++CGNG+RCV ++ + + F ET+ G++ A + G ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +DMG PIL + IP+ S D++ + G VSMGNPH +F+V +++ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER----LKGTAVSMGNPHVVFYV-NNIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237 Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 KT + V V + GG L I W + +V MTG A +G Sbjct: 238 VLNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDG 280 >gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304] gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304] Length = 280 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 21/291 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F KM G GN ++ID + + A+ D + + Q A Sbjct: 1 MRIAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG--SI 116 D R N DGSE CGNG+RC R++ + ET+ GIL + R+ + Sbjct: 60 -DVRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILELEVKRENGWWV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P + IP K D + + F + + G PH FV D Sbjct: 119 KVDMGKPKFGREEIPA-----KTDVWGYEVEHDGRKF--RIYAANTGVPHVAVFV--DSL 169 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ + +F EG N++ A+V +++ +RT+ERGV G T +CG+ + A Sbjct: 170 DFDIVPLARKIRYSEIFPEGTNVNFAKV-DGDTITVRTYERGVEGETLSCGTGSVAVAAI 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + L T V V GG L IE ++ +MTG A + ++G L + ++ Sbjct: 229 ANRLGLTGSKVDVVTKGGLLKIELTED-TAYMTGGASRVFDGILRLNELRY 278 >gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] Length = 284 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 15/288 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + ++F KM G GN + ID + + +D + +I ++ S Sbjct: 2 AQKIEFTKMHGAGNDYIYIDTMRFPIAH-PEKLAIAWSDRHKGIGGDGIILIGKNESGYF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGS 115 +RI N DGSE + CGNG+RCV ++L K +T+ G + +N+ Sbjct: 61 TMRIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVE 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++VDMGEPIL LA M IG N+ VSMGNPH I F+ + + Sbjct: 121 VTVDMGEPILA-DKHQLATPDGSMKDGEVTIGHTNYR----GTFVSMGNPHFINFI-NGV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 YD+ + G L + +F E N+ A + S+ +R WERG G+T ACG+ ACA+ VA Sbjct: 175 EEYDVQTNGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + R ++ M GG L I W++ +NH++MTG A + G +++ Sbjct: 235 AALTGRAGRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIELP 282 >gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] Length = 284 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ AI S D ++LI A V Sbjct: 5 QFTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117 +RI N DGSE ++CGNG+RCV +++ + +F ET+ G++ A + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P + + +P+ + G N VSMGNPH +F++E D+ Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINEPLDFG----TTTLNGTAVSMGNPHIVFYLE-DIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 178 KAPLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237 Query: 237 GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V + GG L+I W DN HV MTG A+ +G + Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284 >gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] Length = 284 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ AI S D ++LI A V Sbjct: 5 QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117 +RI N DGSE ++CGNG+RCV +++ + +F ET+ G++ A + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P + + +P+ + G N VSMGNPH +F++E D+ Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFG----TTTLNGTAVSMGNPHIVFYLE-DIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 178 KAPLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237 Query: 237 GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V + GG L+I W DN HV MTG A+ +G + Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284 >gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 269 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + D + + F+Q+ +I D DA Sbjct: 3 IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGDDAV- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 62 -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ +P++ + D + P SMGNPH FFV DDL D+ Sbjct: 121 GAPRLGWQDVPVSEAVDTLAL----------PLPGAPAACSMGNPHCTFFV-DDLRAIDV 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 170 ATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + V V GG + ++W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSGV 267 >gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +VID R +SD I + DQ+++ + +RI Sbjct: 49 FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVCNRHVGIGGDQLLVFEAPESPEASVRLRI 108 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG E ++C N RC + +R ET+ G + AK D +S+ +G D Sbjct: 109 YNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNAKWD 168 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA S + + L +P +++GNPH ++FV++ L D+A+ + Sbjct: 169 WPEIPLAGSLESAGAQ------LESGPLVSPIAINIGNPHLVYFVQN-LGGLDIAALADP 221 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245 + K E N+ +A VT +S+ L +ER LT ACGS ACA+V+A+ + Sbjct: 222 VQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLISSDK 281 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V GG L +E D +TG ++G + Sbjct: 282 VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315 >gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 240 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 7/240 (2%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI 102 FDQ++++ D RI N DGSEV+ CGNG+RC RF+ R + + T +T Sbjct: 2 GFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTK 61 Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 GI+ + ++G + V+MG P IP + + + + + VV+M Sbjct: 62 AGIVKPELGQNGWVRVNMGYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNM 117 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPHA+ V D+ D+A G + H F E VN +V + + LR +ERGVG T Sbjct: 118 GNPHAVTIVP-DVLTADVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGET 176 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ACG+ ACA+ V+ +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 177 LACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236 >gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12] gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12] Length = 284 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 129/277 (46%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + F ++ + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + ++ + LR VSMGNPHA+ V D + + Sbjct: 130 PVFEPERIPLSGFPNACAE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281 >gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] Length = 284 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + + A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117 +RI N DGSE ++CGNG+RCV ++ + SF ET+ G++ A+ + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L +P+ ++ + G VSMGNPH +F +E D+ Sbjct: 123 VDMGEPRLTKAELPMLGGGEEQTINETMTFGEAE----LKGTAVSMGNPHIVFPIE-DIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 178 QAPLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVAS 237 Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + ++V + GG L+I W +N HV MTG A+ EG + Sbjct: 238 VLNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEGVYFL 284 >gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. SMY] gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5] gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195] gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5] Length = 284 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ AI S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117 +RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L +P+ + + G V VSMGNPH +F + D+ Sbjct: 123 VDMGEPRLTKSELPMLDGGEEHTINETMAFGEVE----LTGTAVSMGNPHIVFPIA-DIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 178 QAPLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVAS 237 Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K N+ ++V + GG L+I W DN HV MTG A+ EG + Sbjct: 238 VLNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEGVYFL 284 >gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 269 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 81/278 (29%), Positives = 124/278 (44%), Gaps = 18/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + D + + F+Q+ +I D DA+ Sbjct: 3 IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGNDAA- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 62 -ARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ +PL+ + D + P SMGNPH FFV DD+ D+ Sbjct: 121 GAPRLGWQDVPLSEAIDTLAL----------PLPGAPAACSMGNPHCTFFV-DDVGTIDI 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + V V GG ++++W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSGV 267 >gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383] gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 266 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 14/274 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+ ++D+RG I + F+Q+ ++ D DA+ A + Sbjct: 3 IGFHKMHANGDDFAIVDLRGATHAIDGRLARQMGDRKRGIGFNQLAVVSDCDDAA--ARV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + +CG+ R V L S T RG LV + ISV+MG P+ Sbjct: 61 AFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGTPL 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W+ +PLA + D + P +MGNPH FFV DDL D+A+ G Sbjct: 121 TGWRDVPLAEALDTLAL----------PLPGAPAACNMGNPHCTFFV-DDLRAIDVAALG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F + N+ +V + LR WERG G+ GS +C +VV + Sbjct: 170 PAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLLDD 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 V V+ GG + ++W V ++G + G Sbjct: 230 IVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSGV 263 >gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315] gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315] Length = 270 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 123/278 (44%), Gaps = 18/278 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + D + + F+Q+ +I D DA+ Sbjct: 3 IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVISDGDDAA- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I V+M Sbjct: 62 -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ IP A + D + P SMGNPH FFV DD D+ Sbjct: 121 GAPRLGWQDIPFAEAADTLAL----------PLPGTPAACSMGNPHCTFFV-DDPDTLDV 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP+F + N+ RV + LR WERG G+ GS +C +VV Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + V V GG + + W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSGV 267 >gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] Length = 275 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN + I+ L D ++++ + A A + Sbjct: 1 MNFYKMQGAGNDFVFIEDFDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELAH--ARM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 IIN DGS CGN +RC +++ F+ ET GI ++ + + V Sbjct: 59 VIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKYVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPL + + + + + + +G PH I F D Y Sbjct: 119 YMGNPSYNGCDIPL-NNLESLIEKEIAVDDKKYK----MTTLLLGVPHTIIFESD--REY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G+ + K +FSEG N++ ++ + + TWERG G T ACG+ ASVV + Sbjct: 172 NVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L ++ + VK GG L+IE + V+M G A+ ++G+L + Sbjct: 232 LGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275 >gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 267 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 14/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+ +++D R + +TS + + F+Q+ ++ D DA DA + Sbjct: 3 LNFQKMHANGDDFVIVDSRNSANPVTSAMAQRMGDRNLGVGFNQLAVLLDCDDA--DARV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + CG+ R L S T RG+L + G ISVDMG P+ Sbjct: 61 MFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVPL 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA++ D +P SMGNPH +FV DD D+A+ G Sbjct: 121 FGWSDIPLAQALDTAVL----------PLAGSPAACSMGNPHCTYFV-DDPATVDIATIG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + + +F N+ ++ + LR WERG G+ GS +C +VV +R Sbjct: 170 PAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLDR 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V+ GG + ++W VF+ G + + G + Sbjct: 230 TVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTMS 265 >gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] Length = 278 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K++ GN ++++ D +++S A D +M + + A D + Sbjct: 1 MRFSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118 N DGS + CGNG+RC +F+ +++KSF+ ET GI L + ISV Sbjct: 59 NYYNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG +P + + + V MG PH + V DD +Y Sbjct: 119 DMGRADFRATSVPCTLDSEIILEKEIEVEGQKLKI----SSVLMGVPHTVILV-DDYDNY 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + +F N++ +V E++ ++TWERG T CG+ C+S V + Sbjct: 174 DIDRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAH 233 Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K +V + GG + + + + +V M G A+ G+ Sbjct: 234 KLGKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAETICTGEF 276 >gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514] gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514] Length = 269 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 27/285 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +++D R + + L D IML+ D Sbjct: 3 LEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWAW 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123 N DGS + CGNG RC RF+ S FTFET GI+ A + +++ + +P Sbjct: 63 DFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQGE-RVTIGLTKP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 R ++ +G ++ G PHA+ FV D + S Sbjct: 122 ----------RDLRLNEQVTLSVGAQP------IHSLNTGVPHAVLFVP-DADKAMVLSL 164 Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + +H F +G N++ + ++ +RT+ERGV G T ACG+ AS + S L+ Sbjct: 165 GQEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAELNG 224 Query: 242 TNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V++ GG L + + +N V +TG A +EGK+ I Sbjct: 225 FKSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269 >gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] Length = 326 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 52/321 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALS-TDDNTHFDQIMLIHDF 55 + F K G+GN LV+D+R + + + AL D IM + Sbjct: 1 MRFGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPA 60 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKEN 111 DA +R++N DGSE + CGNG+RCVV++L R R++ ET G+L + + Sbjct: 61 LGDG-DARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAH 119 Query: 112 R------DG------SISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPF 158 R DG ++VDMG P L+ IP+ ++ + I + Sbjct: 120 RSDTALGDGGIAAIEQVTVDMGRPRLERAQIPMHGPAEERCISEPLAIAGRP----LDIT 175 Query: 159 VVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT----------- 205 VSMGNPHAI FV+ G L +HP F N+ +A + Sbjct: 176 AVSMGNPHAIAFVDVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRRAPQSAADDDG 235 Query: 206 ----SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEW 259 S ++L WERG G+T ACG+ ACA+ VA+ + A++V +LGG L I Sbjct: 236 DSADSPTVIELVVWERGCGITLACGTGACATAVAACLTGRARPGEAITVHLLGGPLAITV 295 Query: 260 -HDNNHVFMTGEAKKEWEGKL 279 + + V M G A ++G + Sbjct: 296 GAELDSVRMRGPATHVFDGVV 316 >gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] Length = 295 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 138/292 (47%), Gaps = 20/292 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI D +N + + + D ++ I + D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGI----LVAKENRDGSI 116 RI N DGSE + CGNG+RC +++ R+ K+ ET G+ + + I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVE 172 V MG P K IP+ K + + F G +N P VV++GNPHA+ FVE Sbjct: 121 KVYMGVPKFKLKDIPMILEG-KDNEEEFLNGELNLNNPILPKVRLSVVNVGNPHAVIFVE 179 Query: 173 DDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+ D L G + H F E +N+ +V + + + TWERG G T ACG+ Sbjct: 180 DNNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTACGT 239 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ASVV + L KT+ V + GG L IE D+ V+M G+A ++GKL Sbjct: 240 GTTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290 >gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] Length = 286 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 24/288 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQD 57 ++ ++ F K++G GN ++ID A D ++ + + Sbjct: 11 EAFVIPFVKIQGNGNDFILIDETDGEVIPDPMKAEFAALYCDRRFGIGADGVLFL--SKS 68 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK----ENR 112 + +RI+ D SE + CGNG+RC+V++ ++ ET+ G L + EN Sbjct: 69 DKANIRMRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNENN 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +DMG+ + + IP + + + + + + V+ G PHA+ FV Sbjct: 129 EFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIFV- 177 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231 D + + + H F G N++ +T + + +RT+ERGV T +CG+ + A Sbjct: 178 DSVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGSTA 237 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 S + L KT V V +GG L+I + + + FM G A + G++ Sbjct: 238 SAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284 >gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] Length = 283 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 120/281 (42%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + A DQI+ I + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAVLAARLADRHFGVGCDQILTIEAPRSEDA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F ++ + + SV Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAETYSV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVLEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 181 PVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGE 281 >gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c] gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c] Length = 284 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 131/277 (47%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + + F ++ + + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + ++ + LR VSMGNPHA+ V D + + Sbjct: 130 PVFEPERIPLSGFPNACGE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G AK ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDGV 281 >gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 346 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 124/281 (44%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 68 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 127 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + G +V Sbjct: 128 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 187 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P D IPLA D + H VSMGNPHA+ V + Sbjct: 188 AMGMPQFDPPQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAA 242 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 243 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 302 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D+ V M+G A ++G+ Sbjct: 303 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 343 >gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] Length = 276 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 34/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + +D + +S D ++LI + DA++ Sbjct: 1 MRFTKMQGCGNDYIYVDCFSERVERPEELAREISDRHFGVGGDGLILIE--RSGRADAYM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116 + N DGSE CGNG+RC ++L +R+ +T GI L+ ++ + + Sbjct: 59 HMFNQDGSEGNMCGNGIRCTAKYLYEHGLIPKERREVLIDTKSGIRKLSLLLEDGKVKEV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 +VDMGE L +L +R + + F+ + +GNPHA++F+ED+ Sbjct: 119 TVDMGEARLTSEL-----------PERITVSGLPLSFIG----IDVGNPHAVYFLEDNPA 163 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 DL+ G +H F E VN V S L+ R +ERG G T ACG+ A Sbjct: 164 LKERGFSALDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTGA 223 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278 A+V A K + V + +LGG L I + + H +MTG A++ + G+ Sbjct: 224 TAAVAAGILSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGE 273 >gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] Length = 278 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+ GN ++++ M N A D +M A D + Sbjct: 1 MKFSKMQAAGNDFILVNGMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSIS--- 117 N DGS + CGNG+RC +F+ +K++ F+ ET GI + +G+I Sbjct: 59 YYYNSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNIEYLE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+ K IP + + + I +F V MG PH FVE+ Sbjct: 119 VDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVF----SSVLMGVPHTTIFVEN-FDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVAS 236 YD+ G+L+ K+ +F E N++ A++ + +++ ++TWERG G T CG+ CA + +A Sbjct: 174 YDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATAALAY 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + GG L IE +N + M+G+A+ G+ Sbjct: 234 KLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAETICHGEF 276 >gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] Length = 281 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 22/283 (7%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + FAKM G GN ++ID + + A++ D ++ + + A D Sbjct: 3 IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---SIS 117 A R N DGSE + CGNG+RC R++ ET+ GI + ++ + Sbjct: 61 AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP + + + I + + V+ G PHA+ FVED + Sbjct: 121 VDMGTPKFSKDEIP---TKEDVWGKEIKIDNRSFEI----YAVNTGVPHAVIFVED--FD 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 +D+ G + +F EG N++ + +RT+ERGV T +CG+ + A + Sbjct: 172 FDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAVAAVA 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + V + GG L +E+ + ++ G A + +GK+ Sbjct: 231 RKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKI 272 >gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] Length = 284 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117 +RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVA 122 Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L +P+ ++ + G VSMGNPH +F + D+ Sbjct: 123 VDMGEPRLTKAELPMLGGGEEYTISETMTFGEAE----LTGTAVSMGNPHIVFPIA-DIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G ++ K P F EGVN+ + L R WERG G+T ACG+ ACA+ VAS Sbjct: 178 QAPLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVAS 237 Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + R ++V + GG L+I W N HV MTG A+ EG + Sbjct: 238 VLNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEGVYFL 284 >gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091] gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091] Length = 292 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDASV 60 ++F KM +GN +VI+ I +A N LS + D ++ + Sbjct: 5 IEFTKMHALGNDYIVINETETEV-IPEEAKNKLSNDICTRRFSVGSDGVIF--ACKSDKS 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114 D RI N DGSE + CGNG+RC+ +++ +K+++ ET+ I L +++ Sbjct: 62 DVRFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVK 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 SI++DMG+ + IP D V+ + VS+GNPHA+ F + + Sbjct: 122 SIAIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKI-IMSSVSVGNPHAVSFTDIN 180 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL +G + H F E VN+ + S +++ TWERG G T ACG+ + V+ Sbjct: 181 IDDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVL 240 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 + N V + GG L I D+N M G+A ++ ++ + Sbjct: 241 LGYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTVD 291 >gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] Length = 280 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M+ ++ F+KM G+GN ++++ I + FDQ++++ + + Sbjct: 1 MKKKIL-FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSR 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF-ETIR-GILVAKENRDGSIS 117 D + +I N DG+E CGNG RC+ +++ + +K F T + ++ + ++R I+ Sbjct: 60 FDFYCQIFNSDGTESFQCGNGFRCLAKYIYVNINKKPFHIIRTKKHTVITSIKDRGKEIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P K + + + + NH + V++GN H +F ++D Sbjct: 120 VNMGTPRFISKKVLTVFQKEWLRQLLTFEKEYNHFEM-----VNIGNSHLVFIIQDSKEI 174 Query: 178 YDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + L + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACASV Sbjct: 175 VRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACASVAFG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 N V V G L + W + +FMTG A ++G + I Sbjct: 235 IKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280 >gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136] Length = 274 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 30/291 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 ++++ F KM G GN +++D R ++ ++I L D ++ + + D Sbjct: 2 ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGG-D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVD 119 +R N DG E + CGNG RC RF+ + FET G++ A+ D + ++ Sbjct: 61 FRMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEFFGD-QVEIN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177 M +P + + G V V+ G PHA+ FV+D L Sbjct: 120 MSQPH----------------SLKLNQGLVVDGTPLEVHSVNTGVPHAVVFVDDVNALST 163 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++ G L H F +G N + A V S S+ +RT+ERGV T ACG+ A + Sbjct: 164 AEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACALI 223 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGKLDI 281 LH VSVK+ GG L + ++ V+ + G A ++GKL++ Sbjct: 224 HHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274 >gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] Length = 297 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 20/294 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDAS 59 ++F KM +GN +VI+ + A + D ++ + Sbjct: 1 MKMEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDE 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---- 114 D RI N DGSE + CGNG+RC +++ R+ K+ ET G+ V++ +G Sbjct: 61 YDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVK 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFF 170 I V MG P K IP+ D D F G + P VV++GNPHA+ F Sbjct: 121 KIKVYMGVPKFKLKDIPMVVDGYSED-DEFLNGELELKNPYLPKVKLSVVNVGNPHAVIF 179 Query: 171 VEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 VED+ D L G + H F E +N+ +V + + + TWERG G T AC Sbjct: 180 VEDNGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTAC 239 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G+ ASV+ + L KT V + GG L IE D+ V+M G+A ++ KL Sbjct: 240 GTGTTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292 >gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 284 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] Length = 285 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 21/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 + F K G+GN ++ D + N D A D I+++ + Sbjct: 3 KLKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEVP- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS--- 115 F+ N DGS+ CGNG+RC +L + + FT +TI G ++ D Sbjct: 62 --FMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTF 119 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MG+P+ + K + + D ++ I + MG H++ F DD Sbjct: 120 FARVNMGKPVFNVKEL-INTDKDNFINEKITIDGEEIEI----SFIFMGTDHSMIF-SDD 173 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L D+ G + +F + VN + + ++ + TWERG GLT ACG+ A AS Sbjct: 174 LSKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATASA 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 V + L KT+ V+V++ GG L+IE+ ++ FMTG ++K EG Sbjct: 234 VLTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEGYYS 281 >gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] Length = 284 Score = 265 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSQGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 VAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] Length = 283 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 114/283 (40%), Gaps = 12/283 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN +V+D N T I AL+ DQ++L+ + RI N Sbjct: 1 MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60 Query: 70 DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 G EV+ CGNG RC+ RF FET++G + + DG + VDMG P L Sbjct: 61 TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYHYDL 180 +P A D R P V MGNPHA FV D + + + Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFCPPLSCDIEFTAVGMGNPHATIFV-DGVDSFPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 L +F E VN+ + +R +ERG G T ACG+ A++ + Sbjct: 180 EPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAAMASGCLRG 239 Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + V GG + W +++ G A+ + G + + Sbjct: 240 FFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISLD 282 >gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 284 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] Length = 286 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 15/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 MV+F K G+GN +V D + +T I + D I+++ + Sbjct: 1 MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIRLICDRNRGVGSDGILVLEKINNQE--FK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116 +RI N DGSE + GNG+R + +++ K F T+ G ++ + R +I Sbjct: 59 VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKTI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ IP+A ++ + I + +S+GNPH +FFV D++ Sbjct: 119 EVEMGKVTFRSSEIPVAGPEREVIDEELKINGE----ILKITCLSIGNPHCVFFV-DEID 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + S G + +P+F +N+ + +V +++R WERG G T A GS++CA+ A+ Sbjct: 174 EEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V M GG L I + + V + G ++ ++G+L Sbjct: 234 YRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGELS 277 >gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661] gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM 2661] Length = 295 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 141/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI D + ++ + + D ++ I D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVKEEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +++ R+ K+ ET G+ V++ +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169 V MG P K IP+ K D + + L L+NP+ VV++GNPHA+ Sbjct: 121 KVYMGVPKFKLKDIPMVVDGYKEDDEFLN----GELKLKNPYLPKVKLSVVNVGNPHAVI 176 Query: 170 FVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FVED+ D L G + H F E +N+ +V + + + TWERG G T A Sbjct: 177 FVEDNNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ ASV+ + L KTN V + GG L IE D+ V+M G+A ++ KL Sbjct: 237 CGTGTTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290 >gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] Length = 278 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 132/285 (46%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D R DN A+ D ++LI A D + Sbjct: 1 MKFVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGI----LVAKENRDGSISV 118 R+ N DGSE CGN +RCV ++ + + + T ET GI L + + V Sbjct: 59 RMFNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELTVVKGAVECVGV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG K +P D+ N V+SMGNPH + FV DD+ + Sbjct: 119 DMGRADFAVKNVPFVCDEDEFIASELRADNR----TFNATVLSMGNPHCVVFV-DDVDAF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G + +P+F E VN+ + +++ +R WERG G T ACG+ ACASV A+ Sbjct: 174 NVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTGACASVAAAAR 233 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V++LGG L ++ + + M G A + + G ++ Sbjct: 234 NTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278 >gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] Length = 278 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+ GN ++++ M N A D +M + A D + Sbjct: 1 MKFSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSI---S 117 N DGS + CGNG+RC +F+ +K+ F+ ET GI + G+I Sbjct: 59 NYYNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDM + K +P + + + IG +F V MG PH FVE D Sbjct: 119 VDMEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIF----SSVLMGVPHTTIFVE-DFDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVAS 236 YD+ G+L+ K +F E N++ A+VT+ +++ ++TWERG G T CG+ CA + +A Sbjct: 174 YDVNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAH 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + GG L IE ++ + M+G+A+ G+ Sbjct: 234 KLGKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAETICHGEF 276 >gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] Length = 278 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 125/290 (43%), Gaps = 34/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---------NITSDAINALSTDDNTHFDQIMLIHDFQ 56 + F+K+ GN +V+D R ++ + + D ++LI Sbjct: 1 MRFSKLHASGNDFVVLDNRDGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114 D + N DGS + CGNG RC VRF R + + FET+ GI+ A+ G Sbjct: 61 DPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKGR 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V + +P D++ + L +++ ++ G PH + VE + Sbjct: 121 RVKVLLTKPK-DYRDVTLDVKGTRLE----------------GSFINTGVPHFVVRVE-E 162 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 + D+ S G + HP F +G N++ +V + +RT+ERGV G T ACG+ A A Sbjct: 163 IDSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATAC 222 Query: 233 VVASGCLHKT-NRAVSVKMLGGGLL-IEWHDN-NHVFMTGEAKKEWEGKL 279 + S V V GG LL I + + V++ G ++G+L Sbjct: 223 AIVSYLKGWVKGSPVDVFTKGGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272 >gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] Length = 295 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 139/295 (47%), Gaps = 26/295 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + A + D ++ I D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116 RI N DGSE + CGNG+RC +++ R+ K+ ET G+ V++ +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169 V MG P K IP+ K D + + L L+NP+ VV++GNPHA+ Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKEDDEFLN----GELKLKNPYLPKVKLSVVNVGNPHAVI 176 Query: 170 FVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 FVED+ D L G + H F E +N+ +V + + + TWERG G T A Sbjct: 177 FVEDNGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ ASV+ + L KT+ V + GG L IE D+ V+M G+A ++ KL Sbjct: 237 CGTGTTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290 >gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 284 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281 >gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241] gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241] Length = 239 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 16/243 (6%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106 ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ Sbjct: 1 MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58 Query: 107 VAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVS 161 A+ +G ++ +DMG P L IP+ + R+ F + F VS Sbjct: 59 TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVS 114 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG G+ Sbjct: 115 MGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173 Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVY 233 Query: 280 DIK 282 + K Sbjct: 234 EYK 236 >gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] Length = 287 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 18/290 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S ++F KM+G GN + + ++ D I+LI A Sbjct: 6 RSEGMEFTKMQGCGNDYIYFNCMEQELSEPGPLSVRLSDRHFGIGGDGIVLICRSDIA-- 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR----D 113 DA +R+ N DGSE + CGN +RCV ++L+ + ET+ G+ ++ Sbjct: 64 DAKMRMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQRSGV 123 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S++VDMG + +P+ ++ IG ++ N VSMGNPH + D Sbjct: 124 RSVTVDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVLC-D 178 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ ++ G +F E VN ++T +L +R WERG G T ACG+ ACA+ Sbjct: 179 DVEGLEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGACAAA 238 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 VA+ + V++ GG LLI++ D V MTG A K ++G + + Sbjct: 239 VAAVENGLCAKGEDIIVRLNGGNLLIKYTDK-TVTMTGTADKVFDGTIKL 287 >gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1] gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1] Length = 239 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 16/243 (6%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106 ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ Sbjct: 1 MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58 Query: 107 VAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVS 161 A+ +G ++ +DMG P L IP+ + R+ F + F VS Sbjct: 59 TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVS 114 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV DD+ L + G +L H MF E VN+ + + E ++ R WERG G+ Sbjct: 115 MGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173 Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVY 233 Query: 280 DIK 282 + K Sbjct: 234 EYK 236 >gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] Length = 283 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 123/286 (43%), Gaps = 21/286 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K +G+GN +V+D RG ++I + + D ++ + + A + + N Sbjct: 9 KYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGI--ARMVVHN 66 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK--ENRDGSISVD--MGE 122 DGS + CGNG+RC V+FL + ET G+L G ++VD MG Sbjct: 67 ADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGP 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L +P + F V + VSMGNPH + D D + Sbjct: 127 ARLVAPNLPSGATG-----QPFLDALVPGHPPLRAYAVSMGNPHMVLL---DQPLEDASR 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP F + N+ RV + L + WERG GLT ACG+ ACAS VA+ + Sbjct: 179 LGPLLEHHPSFPDRTNVEFVRV-DSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRL 237 Query: 243 NRAV--SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGK 285 V + GG L I + + + + G +EG + +G+ Sbjct: 238 PADAWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR 283 >gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 283 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 13/280 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS----VD 61 F KM G+ N +++D R + + I + +Q++ I D Sbjct: 6 PFIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAY 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +RI N DG EV +CGN RC+ L ET G+L + ISV G Sbjct: 66 AAMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFG 125 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +DW+ IPL+R D + PV L++ + +GNPHA+FFV D L +D+A Sbjct: 126 PISMDWRRIPLSREVDTLHL------PVQSGPLKDGLALDIGNPHAVFFV-DCLELFDMA 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 ++ P+F EG+N+ A V +L L WER LT ACG+ AC + A+ Sbjct: 179 HHAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAALKRGL 238 Query: 242 -TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T+ ++V + G L IE + + MTG G ++ Sbjct: 239 VTSTRIAVHLPAGLLKIEIANGDMAVMTGPVAFCCHGFIE 278 >gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 284 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 123/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I NCDGS + CGNG RCV +L + + F ++ + G +V Sbjct: 66 VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGIPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281 >gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium HF4000_APKG2098] Length = 275 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 151/266 (56%), Gaps = 4/266 (1%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM+G+GN ++ D R ++T + I +S ++ DQ++ I +D + +AF++ N Sbjct: 7 YKMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG E+ +CGNG RCV L K + T GIL A+ N +S++MGEP +W Sbjct: 65 SDGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWN 124 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL++ D + + I ++ R F +S+GNPH IFFVE D ++L G + Sbjct: 125 KIPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVE-DFNQFNLKEIGPKIE 182 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 + F E N+++A + + + ++ WERGVGLT ACG+AACA+ V+ L + R V + Sbjct: 183 NYSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDI 242 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274 + + G L I+W +N+++MTG+ + Sbjct: 243 EFVEGLLNIDWKKDNNIYMTGKVSEV 268 >gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] Length = 283 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAALAARLADRHFGVGCDQILTIEAPRSSEA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F ++ + G+ +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGTYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA + + F VSMGNPHA+ V + Sbjct: 126 AMGVPHFEPTQIPLAGFAHAREEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGE 281 >gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 284 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 124/281 (44%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + G +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P D IPLA D + H VSMGNPHA+ V + Sbjct: 126 AMGMPQFDPPQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 + R V V + GG L I W D+ V M+G A ++G+ Sbjct: 241 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 281 >gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5] gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5] Length = 279 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 34/297 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-------ITSDA--INALSTDDNTHFDQIMLIHDFQ 56 ++F K++G GN +VID R ++ + + D ++LI + Sbjct: 1 MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115 + D N DGS + CGNG RC VRF R + FET+ G++ A+ +G Sbjct: 61 NPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYENGR 120 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V + P + L +++ ++ G PH + VE D Sbjct: 121 KVKVQLTPPS-KPEEKTLTVDGEEVI----------------GVFINTGVPHFVVPVE-D 162 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232 + ++ G + H F +G N++ + S +++ +RT+ERGV T ACG+ A A Sbjct: 163 VEKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTGATAC 222 Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286 + S + V+V G L I++ ++ VF+TG K +EG+L + ++ Sbjct: 223 AIVSYLKGLVKKKPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRLSEEVLEY 279 >gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] Length = 274 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 30/291 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 ++ F KM G GN +++D R + + + I AL D ++ + Q Sbjct: 1 MLLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGG 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R N DG E + CGNG RC F L K FET+ G++ A +DG+++ Sbjct: 61 IVRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V++ P + + + + ++ G PHA+ F+ D L Sbjct: 121 VNLTNPH----------------SMQLFVLNADPTVGADVHFLNTGVPHAVAFL-DKLEG 163 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D++ G L H F +G N + AR+ S + +RT+ERGV T ACG+ A + Sbjct: 164 LDISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALL 223 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 L + V + GG L + + V +TG A + G + I Sbjct: 224 HAVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274 >gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] Length = 285 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K G+GN +V D + +T + + + D I+++ + + Sbjct: 1 MEFIKSHGLGNDYIVFDKEKINFPLTEKNVRLICDRNYGIGSDGILILEKINNQE--FKV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117 RI N DGSE + GNG+R + +++ K F T+ G I+ ++ R SI Sbjct: 59 RIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSIE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ IP+ S ++ + I +S+GNPH +FFV D++ Sbjct: 119 VEMGKITFKSSEIPVLGSEREIIDEELKINDETIKVT----CLSIGNPHCVFFV-DEINE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G + HPMF +N+ + +V S + +++R WERG G T A GS++CA+ AS Sbjct: 174 EKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASASY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V M GG L ++ + + V + G A++ ++G+L Sbjct: 234 KKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGELS 276 >gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE] gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE] Length = 279 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 24/287 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K++G GN ++ID D + A D ++ + A Sbjct: 1 MTIQFTKLQGNGNDFILIDEWDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRDG 114 + +RI N DGSE + CGNG+RC ++ + + ET G+L + EN Sbjct: 61 L--QMRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKT 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I V+MG+P+ D IP A+ + H V V+ G PHA+ FV D Sbjct: 119 YIKVNMGKPLFDRVKIP-AQGHGEFINVPLHGYEV--------SAVNTGVPHAVVFV-DS 168 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 L DL L+ +F++G N++ + + +L +RT+ERGV G T +CG+ + A+ Sbjct: 169 LEDPDLMDAAPLIRFDKVFAKGANVNFVQ-RDMGNLRVRTYERGVEGETLSCGTGSVAAA 227 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + VK GG L I + +++ +M G A+ ++G+++ Sbjct: 228 AIARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273 >gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] Length = 265 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM N ++ID R D A A DQ++ I D S D I Sbjct: 1 MNFIKMHSNANDFVIIDRRNTGDAAIDYAAIA-HRKTGVGCDQVVTIDRS-DGSTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +VA++ G I V++G P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+AR D + P++ P V+MGNPH +FFV + L G Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ MF + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + M GG LL EW ++ ++ + + G L Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265 >gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] Length = 305 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 10/286 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60 + ++F KM+G GN + +D R + AL + D ++ I Q + Sbjct: 23 AMKLEFTKMQGAGNDYIYLDCRHSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDG 82 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETI-RGILVAKENRDGSISV 118 DA + + N DGSE CGNG+RCV +L + ++++ +T G + Sbjct: 83 DATMVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRA 142 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYH 177 MG +P + V VSMGNPH + F E Sbjct: 143 GMGRFSTRAADLPAVGLGA---GPLLEVPLVAAGQSWQVSCVSMGNPHCVVFCNEAPPAG 199 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 LA +G + HP F +G+N+ + S SL WERG G T ACG+ ACA+ V Sbjct: 200 VQLADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGACAAAVVGV 259 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R + V++ GG L + ++ V +TG A+ ++G +++ Sbjct: 260 LRGICPRETPIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305 >gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 284 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R G + A DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I NCDGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA D + F VSMGNPHA+ V + Sbjct: 126 AMGIPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 + R V V + GG L I W + V M+G A ++G+ Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281 >gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum] Length = 381 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 138/380 (36%), Gaps = 99/380 (26%) Query: 1 MQSSMVDFAKMEGIGNKILVI---D----MRGCHDNITSDAIN----------------A 37 + S+ + F KM+G GN +V D +S+ + Sbjct: 2 IHSNEITFTKMQGAGNDFIVFKKEDIKVIPNKQFSPDSSEGVRSGASLTIEDLSVISKKL 61 Query: 38 LSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-- 95 DQ++++ D +A D + I N DGS+ CGNG+RC +++ + Sbjct: 62 AHRKLGIGCDQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYIIDNSVKSIH 121 Query: 96 ------------------------------SFTFETIRGILVA----------------K 109 T+ G ++ Sbjct: 122 DKDNKNNGSSGSGGSSDDGESSSNESENAIVHRVHTLAGTIICSTDKSQIGSKNNGDSYY 181 Query: 110 ENRDGSISVDMGEPIL-----------DWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNP 157 + V+MG P L + + I + D+ V+ + Sbjct: 182 REDTMLVKVNMGNPYLLRTNDNTLLVPNDRTILVPTPNPSTDKPIYLERVQVDERRAIDV 241 Query: 158 FVVSMGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 +VSMGNPH + F++D D+ D++ G LAKH MF + N+ T Sbjct: 242 VLVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTK 301 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN-- 262 R WERG G T ACG+ ACA VA+ + K+ + +S+ M GG LLI+W+ N Sbjct: 302 ANHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANEN 361 Query: 263 -NHVFMTGEAKKEWEGKLDI 281 VF TG A + + I Sbjct: 362 FGKVFKTGPATSVFSSVIKI 381 >gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] Length = 271 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 24/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R N+ + + D ++LI + VD Sbjct: 3 IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIENSDK--VDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS + CGNG RC RF + + K FETI GI+ A+ ++ V + Sbjct: 61 KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEAEIMDGFNVKVQLT 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP FD+ + ++ G PH + V+DD+Y +D+ Sbjct: 121 EP------------FDEKIDYEIEVLGEK----LTVSSINTGVPHVVVEVKDDIYSFDVV 164 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G + H ++ G N++ + L +RT+ERGV T ACG+ + A+ + + Sbjct: 165 KYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSIIAVKK 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 N V ++ G +L + ++ VF+ GEA+ + G L+ + ++ Sbjct: 225 GIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLNKEALEY 271 >gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto Rico] Length = 265 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + + D DQ++ I D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265 >gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] Length = 295 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 13/280 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQD----ASVD 61 F KM G+ N +++D R D + ST+ +Q++ I A Sbjct: 18 PFVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAY 77 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +RI N DG EV +CGN RC+ L + + ET G+L + ISV +G Sbjct: 78 ATMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLG 137 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++W+ +P +R D + P+ L + + +GNPH +FFV D L H D+ Sbjct: 138 PISVNWQQLPTSREVDTLHI------PLKSGPLSDGVALYIGNPHVVFFV-DRLVHDDIP 190 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 F + P+F EGVN+ +A V S+ L WER LT ACG+ AC + A+ Sbjct: 191 LFAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGF 250 Query: 242 TNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V + G L IE +++ V MTG G ++ Sbjct: 251 VNSTKVKVYLPAGELQIELIEHDMVVMTGPVAFCCHGYIE 290 >gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] Length = 277 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + + D DQ++ I D D I Sbjct: 13 VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 70 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 71 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 277 >gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Virginia] Length = 265 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + + D DQ++ I D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P+ P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKV------PLLVPKYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265 >gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153] Length = 217 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 6/211 (2%) Query: 73 EVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P I Sbjct: 6 RSGQCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFMPSEI 65 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P + D D G ++ V+MGNPHA+ V DD+ + G+L+ H Sbjct: 66 PFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRETGSLIEPH 123 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSV 248 F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L + V V Sbjct: 124 RQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDEGKTVEV 183 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + GG L IEW V MTG A+ +EG+L Sbjct: 184 ILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214 >gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] Length = 283 Score = 258 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 22/286 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + A D ++++ Sbjct: 1 MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113 F+ N DGS+ CGNG+RC +L + ++ F +T+ G L K N D Sbjct: 60 --FMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S V+MG+P+ + K + + ++ R++ +I + MG H++ FV + Sbjct: 118 FSARVNMGKPVFNVKEL-INTEKEQFLREKINIDGKEIEI----SYIFMGTDHSVIFV-N 171 Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D Y++ FG + + +F + VN++ +V + E +++ TWERG G T ACG+ A AS Sbjct: 172 DFNDYNIDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTGATAS 231 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 232 AVLAKTFGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Mississippi] Length = 268 Score = 258 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + + D DQ++ I D D I Sbjct: 4 VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 62 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 268 >gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] Length = 270 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 124/281 (44%), Gaps = 25/281 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + ID R + + + + D +MLI + A D Sbjct: 3 IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 R NCDGSE + CGNG RC RF + + + TFET+ GI+ A+ ++ V + Sbjct: 61 KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + K+D V+ G PHA+ F +D+ + D+ Sbjct: 121 TPFDEKSDYQIELDEKKLD----------------ISSVNTGVPHAVMFC-NDIENIDIM 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G+ + H F G N + + L +RT+ERGV G T ACG+ A + + Sbjct: 164 KLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFAVKK 223 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T V K G +L + +N V++ GEA+ ++G+L Sbjct: 224 GLTKSPVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGELT 264 >gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] Length = 279 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 23/288 (7%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++F KM G GN ++ID DN S+ + + D + + A D Sbjct: 1 MEFVKMHGNGNDFVLIDEFESVKVPDNRKSEFVRVVCDRRFGVGGDGAIFVQKSDIA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG--SIS 117 A N DGS + CGNG+RC R++ R K ET+ G+L D I Sbjct: 59 AKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDVWFDEMWWIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P K +P + + + F I + V+ G PHA+ FV+D + Sbjct: 119 VNMGRPKF-GKDVP---ALKDVWGEVFEIDGRKFEV----YAVNTGVPHAVIFVDDFDFD 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 + + +F EG N++ A+V S S+ +RT+ERGV T +CG+ +CA V Sbjct: 171 F--YKVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETLSCGTGSCAVAVVG 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 L ++ V V+ GG L IE N+ ++M G A K +EG+L +G Sbjct: 229 NRLGILDKVVEVQTKGGILKIEV--NDEIYMNGTAAKVFEGRLLELSG 274 >gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 126/306 (41%), Gaps = 38/306 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ +++ A+ AL D ++ + + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENALDLSPAAVAALCDRRAGIGADGLLHVVRSEAHPEG 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 RAMADEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG ++V MG+ +L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDVTVGMGKALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D + DL + ++ + +GVN+ + LR ERG G T +CG+ ACA Sbjct: 166 DDLAHAGDLLA-PPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + +V +V + GG L+I + + MTG A EG+++ Sbjct: 225 VAVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE---A 281 Query: 285 KWIKKN 290 +W++ Sbjct: 282 EWLENA 287 >gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] Length = 277 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 115/286 (40%), Gaps = 30/286 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNI--------TSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 K +G GN ++ID R ++ + L + D ++LI ++ Sbjct: 4 TKYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTK 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118 N DGS + CGNG RC RF + + K FETI G + A + V Sbjct: 64 NHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAHIMDSKRVKV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYH 177 + K I + + V+ G PH + FV ED+L + Sbjct: 124 QLTPYHSHQKNIEIKTEYGTF----------------KGHFVNTGVPHFVIFVDEDELDN 167 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D+ G + H F +G N++ T S +RT+ERGV G T ACG+ + A + Sbjct: 168 LDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAACGIN 227 Query: 236 SGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + V + G LL +N+ VF+ G K +EG L Sbjct: 228 AYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGMLS 273 >gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] Length = 299 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 25/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + FAK+ G GN +++D S AI D ++ + Q + D Sbjct: 21 LGFAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--D 78 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKE-NRDGSI--S 117 +R+ DGSE + CGNG+RC+ ++ +SF ET+ GI+ + RDGS Sbjct: 79 LGMRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWAR 138 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P + IP S D MD V+ G PHA+ FV+D Sbjct: 139 VDMGVPRFNRPSIPACGSGDLMDEQMGEF---------RVCAVNTGVPHAVIFVDD--LD 187 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ + +F EG N+ ++ S SL +RT+ERGV G T +CG+ A AS + Sbjct: 188 IDIYEAAPPIRHCSVFPEGANVDFVKLGS--SLQIRTFERGVEGETFSCGTGAVASASVA 245 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V+ GG L+I + + + FM G A + ++D Sbjct: 246 RRMGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288 >gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] Length = 272 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 26/288 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM G GN ++ID R + T + + + + D ++LI VD Sbjct: 4 VSFWKMSGSGNDFIIIDNRTLFIDKTDFRNTVAKICKRSMSVGADGVILIEPSNK--VDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG RC RF + K FE++ GI+ A+ S+ V + Sbjct: 62 KWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKLT 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P D P+ L L N V+ G PH V DD+Y++D+ Sbjct: 122 RPS---------------DLKLNIDIPLTDLTL-NGSFVNTGVPHIAIEV-DDIYNFDVK 164 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G + H +F +G N++ ++ +++ +RT+ERGV T ACG+ + A Sbjct: 165 KYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILHKK 224 Query: 240 HKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V + GG L+I +++V++ GEA+ ++G L ++ K+ Sbjct: 225 SILKSPVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272 >gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2] gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2] Length = 270 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN +V++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T L+ + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + +P S DK+ + + + L+ V +GNPH + F L D Sbjct: 120 KVSFNEVWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTVVFKYGSLTMK-EENGNIIMQGAATLVARGEY 266 >gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] Length = 283 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 22/286 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ R + + A D ++++ Sbjct: 1 MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113 F+ N DGS+ CGNG+RC +L + ++ F +T+ G L+ + N D Sbjct: 60 --FMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S V+MG+P+ + K + + ++ R++ ++ + MG H++ FV + Sbjct: 118 FSARVNMGKPVFNVKDL-INTEKEQFLREKINVDGTEIEI----SYIFMGTDHSVIFV-N 171 Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D Y++ FG + + +F + VN++ +V + +++ TWERG G T ACG+ AS Sbjct: 172 DFNDYNIDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGTGVTAS 231 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 232 AVLAKTFGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 84/292 (28%), Positives = 135/292 (46%), Gaps = 33/292 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ + +S D ++LI + D + Sbjct: 7 MRFTKMQGIGNDYVYVNCFEETVADPAAVARFVSDRHFGIGSDGLILIGPS--GTADCRM 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK---ENRDGSIS 117 + N DGS CGNG+RCV ++ R+S T ET+ G+ + E ++G + Sbjct: 65 DMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIEFTVEEKNGRFT 124 Query: 118 -----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 VDMGE L +L + ++ ++ F+ +S+GNPHA++F+ Sbjct: 125 ARLLTVDMGEARLTSEL-----------PEPINVDGRDYSFVG----ISVGNPHAVYFM- 168 Query: 173 DDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D + L G HP F + VN ++ + +R WERG G T ACG+ A A Sbjct: 169 DSIDDLRLDRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTGATA 228 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 S A+ + T V V++ GG L I ++ H+FMTG A + + G +DI Sbjct: 229 SAAAAILMGYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIP 280 >gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] Length = 274 Score = 256 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 4/266 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R + N++ D I + D DQ++ I + DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKNS--GKKDAELE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ K T G L +K + + ++G Sbjct: 61 FYNSDGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKT 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPL + + I N+ +++GNPH +FF+ DD+ YDL G Sbjct: 121 NWDEIPLKKDLNT-KNLNIKIISKNNNEHIGGTSINVGNPHVVFFI-DDIEDYDLKKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H F E N+++A+V + + ++ WERG GLT ACG+AACA+VVA+ T++ Sbjct: 179 EIENHNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQ 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271 V+ G L I +N + M G Sbjct: 239 ADVEFALGKLTISIDKDNSIHMKGPV 264 >gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] Length = 292 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 67/296 (22%), Positives = 119/296 (40%), Gaps = 28/296 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 ++ +++F KM G GN +V+D R + + A D ++ + + Sbjct: 3 KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSIS 117 +R N DGS CGNG RC+ RF + ++ FET GI A+ D Sbjct: 63 DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEVPDDPQAP 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + P + + P++ F + + G H + FV + Sbjct: 123 VRLYLP-----------PAGTYEPNPRLATPLDTQF-ESVAFIWTGTEHLVCFVP-AVEA 169 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTS----LESLDLRTWERGV-GLTAACGSAACA 231 +A +G L P + G N+ V L RT+E+GV T ACG+ A A Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229 Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + + + + + ++V M GG L + + + +F+ G A+ + G +++ Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285 >gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10] gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10] Length = 294 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 100/275 (36%), Positives = 156/275 (56%), Gaps = 12/275 (4%) Query: 11 MEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GNK ++ D+RG N+++D++ A++ FDQ++++ D + DAF+RI N Sbjct: 28 MNGAGNKFILADVRGRAGVFNLSADSVKAMARAH--PFDQLLVLEDSD--TSDAFMRIWN 83 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG EV +CGNG R + + + +T G+L+A++ S+SVDMGEP LDW Sbjct: 84 SDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDWT 143 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL R D + D + + + P VSMGNPHA+FF+ D+ ++ + G ++ Sbjct: 144 EIPLVRPMDTLQLD--FAVEKDGVRIEAPGAVSMGNPHAVFFIR-DIANFPVTGLGPVVE 200 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 P+F E VN A++ + LR WERG G+TAACG+ ACA++VA+ +R + Sbjct: 201 HAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAMI 260 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 GG L +EW +NHV +TG + EG +++ Sbjct: 261 HADGGDLSVEWRKSDNHVILTGPVED--EGPIELD 293 >gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 279 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 123/290 (42%), Gaps = 31/290 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R T+ A + D ++LI + ++A D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSEEA--DF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG RC RF + R+ F T G++ A+ + ++ + M Sbjct: 63 SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISG-TAVLLTM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P R H+ L V G PHA+ F D++ + Sbjct: 122 TPPGQC--------------RLNLHLAGPTGEEL-TLHTVDTGVPHAVLFC-DEIATVPV 165 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 +G+ HP F G N++ + L +RT+ERGV T ACG+ A A+ + + Sbjct: 166 KEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASR 225 Query: 239 LHKTNRAVSVKMLGG-GLLIEWHDNNH----VFMTGEAKKEWEGKLDIKT 283 L + +V GG L+I + D++ V + G A ++G L + Sbjct: 226 LGRAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSLHPEA 275 >gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] Length = 272 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K++G GN ++ID D + A D ++ + A D Sbjct: 3 IAFTKLQGNGNDFVLIDEHDGEVIPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA--D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVA---KENRDGSIS 117 +R++ D SE CGNG+RC+ ++ ++S + ET GI+ + + + + Sbjct: 61 VRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEFTAT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + M P + IP A + + + R + + G PHA+ FV+ ++ Sbjct: 121 ITMPAPAFERSAIPAAGNGEYKEEIR----------NFTVYAANTGVPHAVVFVK-EIGA 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+A+ G + HP F EG N++ +++ +RT+ERGV G T +CG+ A AS + Sbjct: 170 VDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATASAAVA 229 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K V V+ GG L+I + V M G A+ + G + Sbjct: 230 HHLGKVGDTVRVETKGGPLVIRF--GETVTMEGPAETVFSGVI 270 >gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3] gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3] Length = 318 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%) Query: 1 MQSSM---VDFAKMEGIGNKILV---IDMRGCHDNITSDAINALSTD-DNTHFDQIMLIH 53 M+S ++F KM +GN +V +D + + + N + + D ++ + Sbjct: 5 MESERFMNLEFTKMHALGNDYIVFNELDGIIVPEELKGEFSNKICKRGFSVGADGVIFVQ 64 Query: 54 DFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK 109 A DA RI N DGSE + CGNG+RC +++ R K ++ G+ +++ Sbjct: 65 VPSTADYDADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISE 124 Query: 110 ENRDGS-------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNP---- 157 + S + V MG P K IP+ D + ++ PVN L+ Sbjct: 125 MEFNESNNEVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEA 184 Query: 158 ---FVVSMGNPHAIFFVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLES 209 V ++GNPH + ++++ + + L G + H F E +N+ + + + Sbjct: 185 LKLSVANVGNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKE 244 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMT 268 + + TWERG G T ACG+ +SV L KT V + GG L IE +N + ++M Sbjct: 245 IQIITWERGAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMK 304 Query: 269 GEAKKEWEGKL 279 G A+ ++G L Sbjct: 305 GGAEISYDGIL 315 >gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] Length = 285 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 10/270 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G+GN +V D +TS+ + + D N ++ ++++ N D Sbjct: 8 YHGLGNDYVVFDPNKNELELTSENVRMIC-DRNEGLGSDGVLEGPILKEDGMYVKVWNPD 66 Query: 71 GSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPILD 126 GSE ++ GNG+R ++L +++K+F T G + N DGS + V MG+ Sbjct: 67 GSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMGKLSFW 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 127 SDDIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGDY 181 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 F + +N I +V E + + +ERG G T A G+ ACA+ + L TN V Sbjct: 182 AELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYKLGMTNNKV 241 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V+M GG L +E ++ +VFMTG+ + Sbjct: 242 IVQMPGGELQVEIEEDWNVFMTGDVFYVAK 271 >gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] Length = 281 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 22/287 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN ++++ + + D A D ++++ + + Sbjct: 1 MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLIL---KYVAN 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK---ENRDGS 115 F+ N DGS+ CGNG+RC +L + + +FT +T+ G L + EN Sbjct: 58 MPFMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MGEP+ D K + ++++RF + + MG H++ FV +D Sbjct: 118 AKVNMGEPVFDVKKL------INIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-ND 170 Query: 175 LYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 Y++ G+ + + +F + VN++ +V ++++ TWERG G T ACG+ A AS Sbjct: 171 FSDYNIDDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASA 230 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V + ++V + GG L+I++ + +MTG ++K EG+ Sbjct: 231 VLARIYGYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQY 277 >gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 286 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + K G+GN L+ D +T ++I + + D +++ + Sbjct: 3 ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLV--GPVLGQDKLEV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120 +I+N DGSE + GNG+R ++L +++ F T+ G + N DG I V M Sbjct: 61 KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ IP+ ++ + G + + VS+GNPH + ++ +D+ Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYRVT----CVSIGNPHCVIWL-NDISKDLA 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E +N + +V ++++ +ERG G T A G++ CA+ A+ + Sbjct: 176 CRIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYRMG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T+ + V M GG L +E + V MTGE G+ + Sbjct: 236 LTDPKMYVHMPGGVLEVEIEKDGSVLMTGEVGYV--GRFTL 274 >gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] Length = 290 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 126/282 (44%), Gaps = 12/282 (4%) Query: 1 MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 M+ + + + G+GN +V D +T + + + D N ++ Sbjct: 1 MEVTKMKVVLERYHGLGNDYVVFDPNKNELGLTPENVRMIC-DRNAGLGSDGVLEGPVMK 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGIL-VAKENRDGS 115 F+++ N DGSE ++ GNG+R ++L +++K F T G + VA N DGS Sbjct: 60 EEGMFVKVWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDGS 119 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V MG+ IP+ ++ + G L V++GNPH + + + Sbjct: 120 RLRVSMGKLSFYSDDIPVTGERREVINEDMVFG----RTLYPVTCVTIGNPHCVIPMR-E 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G+ F +N I +V E++ + +ERG G T A G+ ACA+ Sbjct: 175 ISKPLVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAAG 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + L TN V V M GG L +E D+ +V+MTG+ + Sbjct: 235 VAYKLGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDVFYVAK 276 >gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] Length = 274 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 38/287 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN ++ID D A+ D ++ I + D Sbjct: 13 IAFTKLHGNGNDFILIDEMDQVIIPDDMKAQFAVVYCDRRFGIGGDGVLFI--SKSDKAD 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGS 115 +R+ D SE + CGNG+RC+ ++ + K+K+F+ ET+ G++ + + D Sbjct: 71 IRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDFM 130 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++DMG + D + + V+ G PHA+ FV ++ Sbjct: 131 ATIDMGTAVYDESR---------------------EIDGMTVYSVNTGVPHAVIFV-GNV 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 + + HP F +G N++ ++T + +RT+ERGV G T +CG+ + AS + Sbjct: 169 DGIAINEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASAL 228 Query: 235 ASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + KT V VK +GG L I + MTG A + G++ Sbjct: 229 IAAKTGKTHGSVVHVKTVGGPLDITV--GDIPQMTGPAATVFVGEIQ 273 >gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E] gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii] gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22] Length = 270 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 18/279 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++F KM G+GN ++++ R N++ A N DQ ++ + D Sbjct: 3 NKINFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYE----ENND 58 Query: 62 AF-IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + + I N DGS + CGN +RC+ + + +++ T + L+ ISV++ Sbjct: 59 FYTMIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNV 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + +P S DK+ + L L+ V +GNPH I F L D Sbjct: 119 GNVSFNETWMP---SRDKI----WKFAERYMLDLKEMLCVDIGNPHLIIF--SKLEPQDK 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +F++GVN++ A V + L WERG GLT ACGS ACAS A L Sbjct: 170 TIIGQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLG 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V G L I ++ ++ M G A G+ Sbjct: 229 FVHSPSTVVFEYGNL-IMREEDGNIIMQGAATFVMRGEY 266 >gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] Length = 289 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K + +GN +++ R +T I A + D I+L+ + A + Sbjct: 1 MKFEKWQALGNDYAIVEQRDLPFELTPARIRAFCAGHFGVFADGILLLSESDQPGFVADL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I N DGSE + GNG R + +L R F+ +T G + + VDMG Sbjct: 61 KIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMGR 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180 L K P S R + G F VS+GNP V+ + L DL Sbjct: 121 AKLTSKDFP---SGPDDGRAQLTAGQHQWSFQH----VSIGNPQCSIRVDSLEALDALDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F N+S + + + R +ERGVG T + G+ A + VA Sbjct: 174 PAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLRG 233 Query: 241 KTN-----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L +E ++ HV +TG A + G L Sbjct: 234 GGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTLS 278 >gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] Length = 274 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 28/288 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 + F K+ G GN ++ID + I D A D ++ + D Sbjct: 3 IPFVKLHGNGNDFILIDEYAG-EKIPDDMKGHFAAVYCDRKFGIGGDGVLFLLKSNDG-- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK----ENRDGS 115 +R+ D SE + CGNG+RC+ ++ + T +T+ G ++ + E+ D Sbjct: 60 -IRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDEDGDFM 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+M PI + IP D + + F V+ G PHA+ FV DL Sbjct: 119 AEVEMTPPIYESPGIPAKGKGDFHEIINGY----------EVFAVNTGVPHAVIFVR-DL 167 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 DL + F G N++ +T S+ +RT+ERGV T +CG+ A AS Sbjct: 168 DSLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGATASAA 227 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L KT V V+ +GG L I D FM G A + G L + Sbjct: 228 IAYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGMLHLD 273 >gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] Length = 289 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 38/306 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ ++ A+ AL D ++ + + Sbjct: 2 STRIPFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGIGGDGLLHVVRSAEHPEA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 AQMAGEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG ++V MG+ +L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDVTVGMGKALLPEGDVTVSVGDRS----------------WPARSVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DDL H + + GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 -DDLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + A +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID---A 281 Query: 285 KWIKKN 290 W++ Sbjct: 282 DWLENA 287 >gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] Length = 282 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 118/287 (41%), Gaps = 27/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLIHDFQD--ASV 60 + F KM+G GN +VID R + + D A+ D I + + V Sbjct: 9 MPFVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGV 68 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D N DGS + CGNG RC R + T G + A+ G + V Sbjct: 69 DFIWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQ 128 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + I L + + V+ G PH + FV DD+ D Sbjct: 129 LTPAKDARLDIALPAADKTLRA----------------HFVNTGVPHTVIFV-DDVAKVD 171 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 L G + H F +G N + A+V +++ LRT+ERGV T ACG+ A A+V S Sbjct: 172 LPDLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSH 231 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T V+V GG L I D ++VF+ G A + G L +++ Sbjct: 232 KLGLTGPEVNVTTSGGEQLTISV-DGDNVFLAGAATVTFTGDLLLES 277 >gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5] gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5] Length = 270 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + L+ V +GNPH I F L D Sbjct: 120 SVSFNEAWMP---SRDKV----WAFAERYMIDLKETICVDIGNPHLIIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 304 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN L+ D + + + I L + D I + ++ Sbjct: 25 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 82 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120 ++ N DGSE + GN +R +L ++ +SF+ T G + + NR+G I + M Sbjct: 83 KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 142 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ D + I L + + F+ G + VS+GNPH + + D++ + Sbjct: 143 GQLSFDSEKIGLTGPKREALHEYFNFGGEEYA----CTCVSVGNPHCVI-ITDEISRAKV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ A+ L Sbjct: 198 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLG 257 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG L + +N +V M G K +L Sbjct: 258 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 296 >gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12] gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 278 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 124/289 (42%), Gaps = 25/289 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 ++S + F KME GN ++ D R I A D I+ A Sbjct: 7 LRSKKMKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA- 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG--- 114 D + N DGS + CGNG+RC+ R++ + + + T ET G+ D Sbjct: 66 -DMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQ 124 Query: 115 --SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 S+ V MG+ + + +R I +F R V++G PH VE Sbjct: 125 VSSVQVKMGKAEWE----------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVE 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D + +L +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + + Sbjct: 171 DFMKDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSC 230 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V L K + GG + +E D+ V + G+A + G +D+ Sbjct: 231 GVILQHLQKISGEAHFYTEGGDVFVEVKDD-VVMIYGKANFVFAGDIDV 278 >gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] Length = 270 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T L+ + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERGVG T ACGS AC S A L Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAGLKLGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V G L ++ +N ++ M G AK +G+ Sbjct: 230 IHAPSMVVFKHGILTMK-EENGNIIMQGSAKLVAQGEY 266 >gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 285 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 14/283 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + K G+GN L+ D +T +A+ + + D +++ Sbjct: 1 MKITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLV--GPILGENKM 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI--LVAKENRDGSISV 118 ++I+N DGSE + GNG+R ++L +++ F T+ G + I V Sbjct: 59 EVKILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG IP+ ++ + G + + VS+GNPH + ++ +D+ Sbjct: 119 SMGHLSFWSDEIPMTGPRREVLNETLTFGSIPYRVT----CVSIGNPHCVIWL-NDISKD 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G F E VN + RV ++++ +ERG G T A G++ CA+ A+ Sbjct: 174 LVCRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T+ + V M GG L +E ++ V MTG+ GK + Sbjct: 234 MGLTDPKMYVHMPGGVLEVEIEEDVSVLMTGDVGYV--GKFTL 274 >gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] Length = 270 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 122/278 (43%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246] gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246] Length = 270 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +++ T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKEIICVDIGNPHVVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 285 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + ++T + I + D I+L + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121 RI N DGSE + GNG+R R+L + F+ ET+ G++ + G ++ V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + F ++GNPH + + DD+ Sbjct: 120 KVSFWSRDIPVVGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINADVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + P+F N+ +V ++ + WERG G T A GS++ A+ + L Sbjct: 175 NFGPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + V+M GG +LI+ D+ H+ MTG K +G+L Sbjct: 235 CDSEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGELS 273 >gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] Length = 269 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 16/277 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 SS ++F KM G+GN ++I+ + +++ A + DQ ++ + D+ Sbjct: 2 SSKINFVKMHGLGNDFVIINKKDLTGTYDLSQLAKSMAKRHLGIGCDQFIIYEEQNDS-- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I N DGS + CGN RC+ + + +K T L+ + +ISV++ Sbjct: 60 -YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNV 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + +P S DK+ + + L+ V +GNPH + F L D Sbjct: 119 GGVSFNESWMP---SRDKI----WEFAERYMIDLKETICVDVGNPHLVIF--SKLELQDQ 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 170 KIVGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGLKLG 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V G L I +N ++ M G A +G Sbjct: 229 FIHSPCEVVFKHGSL-IMKEENGNIIMQGPASLVAKG 264 >gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] Length = 287 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 41/299 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDN--THFDQIMLIHDF 55 +++ F KM G GN +V+D R I+ + + L+ D ++LI + Sbjct: 3 VENERTRFLKMTGSGNDFIVLDNRAQ--GISPEQGRELARLACRRKLSVGADGLILIEN- 59 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRD 113 D VD R N DGSE + CGNG RC RF + + +F T+ GI+ A+ ++ Sbjct: 60 -DPEVDFRWRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEAEI-KE 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + + M P + + ++ G PH + F+E+ Sbjct: 118 PRVKIRMTPPHGLEPDLNVEAEQRSFRL----------------HFINTGVPHVVCFLEN 161 Query: 174 D--LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 D L ++ +G LL H F G N++ A V + +RT+ERGV T ACG+ + Sbjct: 162 DRALEEMNVFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACGTGS 221 Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWH--------DNNHVFMTGEAKKEWEGKL 279 AS + + V V+ G L I + + + V++ G+AK +E +L Sbjct: 222 IASALVAAAKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEAEL 280 >gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 306 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 13/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIH-DFQDASVDA 62 M F K + +GN +VID R T DA+ + D ++ AS Sbjct: 1 MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPVHASRPV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI--LVAKENRDGSISV 118 +RI N DGSE + GNG+R + +R + FT T+ G + + G +SV Sbjct: 61 QLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAGVVSV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MGEP + +P+ + +++GNPHA+ E Sbjct: 121 GMGEPCFEAAAVPMLGITGLAVEQPLLVDGRQLTVT----ALNLGNPHAVVLTEHPTREL 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L+A+H F N+ RV ++ + WERG G T A GS+ CA+ + Sbjct: 177 -ACALGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLASGSSGCAATAVAHR 235 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + ++V+M GG + + + V MTG A+ G L Sbjct: 236 LGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278 >gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5] gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5] Length = 270 Score = 252 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 71/278 (25%), Positives = 118/278 (42%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMPN-------RDKVWEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERG GLT ACGS AC S A Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] Length = 270 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ +L + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHNDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WERGVGLT ACGS AC S A Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGSFAAGLKHGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379] gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] Length = 288 Score = 252 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52 M +S + F K G N +++ + + + L D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAALVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 53 -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R +L ++ T T G Sbjct: 61 EARSMADEAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG+ +L + ++ V+MGNPHA+ Sbjct: 121 LAKNGDITVSMGQALLPGASVTVSVDGRS----------------WPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+D + DL S ++ EGVN+ + +R ERG G T +CG+ A Sbjct: 165 FVDDLDHAGDLFS-APPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + AV+ V + GG L+I H + V MTG A EG +D Sbjct: 224 CAVAVATARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVIDP- 282 Query: 283 TGKWIKKN 290 W++ Sbjct: 283 --AWLETA 288 >gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500] Length = 428 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 143/400 (35%), Gaps = 123/400 (30%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------------- 36 V F KM G GN ++ I S+ N Sbjct: 28 RVSFTKMHGAGNDFVLFKREDIKRTIVSNKANGHGHTNGNSNGNNNGNGTSNGNGNYSYV 87 Query: 37 ------------ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + DQ++++ D + D + I N DGS+ CGNG+RC Sbjct: 88 PSLDELAYISKSIANRKLGVGCDQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCF 147 Query: 85 VRFLTS------------------RMKRKSFTFETIRGILVAKENR-------------- 112 +++T R S T+ GI++ + Sbjct: 148 SKYITDNRIPSIYNEDGSINSDRVYHDRPSQRVHTLSGIIITYPQKQQHQHEGVEEVEEN 207 Query: 113 -----------------------------DGSISVDMGEPILDWKLIPLARSFDKMDRDR 143 I V+MG P + ++ +R Sbjct: 208 GKDNHNNNHNNNLNNNTQQQQQLNKILSLTKFIKVNMGTPYILRTNEERSQLLVVDNRSV 267 Query: 144 FHIGPVNHLFLRNPFV----------VSMGNPHAIFFVEDD---------LYHYDLASFG 184 +I + F++ +V VSMGNPH + F++D+ L D++ G Sbjct: 268 MNINTKSIHFMKTIYVTPTVSLRCVLVSMGNPHCVIFLKDNQGSIADESQLESMDISYIG 327 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--T 242 L +F + N+ V + L +R WERG G T ACG+ ACA VAS K Sbjct: 328 RKLESDGLFIDSCNVEFVSVIAQNKLKVRVWERGAGETLACGTGACAVAVASILTGKSVI 387 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + ++SV+M GG L+I+W+ ++N V+ TG A + +++I Sbjct: 388 SESISVEMPGGELIIDWNKEDNKVYKTGPATTVYSSEVNI 427 >gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C] gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C] Length = 291 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MTHTTLSFLKGHGTENDFVIVPDPDNSVDLPPTAVAALCDRRAGIGADGVLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L ++ T G+ Sbjct: 61 EAAHMADEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++ G ++V MG +L + ++ V+MGNPHA+ Sbjct: 121 LDKTGDVTVSMGRALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVE L H + + GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVES-LDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ +T R V +V + GG L+I H + V MTG A G+ + Sbjct: 224 CAVAVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE-- 281 Query: 283 TGKWIKKN 290 W+ + Sbjct: 282 -AAWLTET 288 >gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] Length = 284 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 12/276 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + K +G+GN LV+D + I L D I+ + + Sbjct: 7 ITMIKYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGILY--GPIEIDGKMGV 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISVDM 120 RI N DGSE GNG+R ++L +K + F+ +T+ G + + NR V M Sbjct: 65 RIFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRVKM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ + IP+ ++ + F + +++GNPH I F+ + + Sbjct: 125 GKASFISREIPVTGEVREVINESFTFHNKEYKAT----CLTVGNPHCIIFM-NQVTPELA 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA+ L Sbjct: 180 KELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLG 239 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V+V GG + I+ D++ ++MTG + Sbjct: 240 LVENRVNVNQPGGMIQIDIKDDDTIYMTGTVGYVAD 275 >gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 285 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + +T + I + D I+L + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121 RI N DGSE + GNG+R R+L + K F+ ET GI+ + G ++ V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + F ++GNPH + + DD+ Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + +P+F N+ +V ++ + WERG G T A GS++ A+ + L Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 235 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGELS 273 >gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] Length = 285 Score = 251 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 18/292 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 MVDF K G+GN +VID + ++ + I + D I+ +D + Sbjct: 1 MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS--IS 117 +I+N DGSE + GNG+R ++ + F T G + + + I Sbjct: 61 F--KILNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTNLIK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V +G+ IP+ ++ + + V++GNPH I ++D + Sbjct: 119 VSIGQYSFINHKIPVKLDCTEVLNQEIELLGKKEIIN----CVNIGNPHCIL-IKDKISK 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G +L HP+F N+ ++ ++ + WERG G T A G+++CA+ + Sbjct: 174 DLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASCTAY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 L + V+V+M GG + +E + VF+TGE + +G + ++IKK Sbjct: 234 ILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKG---VFASEFIKK 281 >gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] Length = 274 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 4/266 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA I Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ +K T T G L +K + + ++G P + Sbjct: 61 FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W+ IPL++ D D + I N+ +++GNPH IFFV DD+ +DL + G Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271 ++ G L I + N + M G Sbjct: 239 TDIEFALGSLTISIDERNSIHMKGPV 264 >gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] Length = 270 Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 83/272 (30%), Positives = 117/272 (43%), Gaps = 9/272 (3%) Query: 11 MEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D+R G + A DQI+ I + A I N Sbjct: 1 MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGIWNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS + CGNG RCV +L + + F ++ + +V MG P + Sbjct: 61 DGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAVAMGVPQFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPLA D + F VSMGNPHA+ V + + G LL Sbjct: 121 TQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAAPVERVGALL 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ + R V Sbjct: 176 QQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVERDVQ 235 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278 V + GG L I W + V M+G A ++G+ Sbjct: 236 VSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 267 >gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c] gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c] Length = 277 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 115/285 (40%), Gaps = 24/285 (8%) Query: 6 VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN L+ID R A D ++ + D Sbjct: 8 IPFCKLHGNGNDFLLIDELEGTRIPDQMKGEFAELYCDRRFGVGADGVLFL--SAGTEGD 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKE---NRDGSIS 117 +RI D SE + CGNG+RC R+ + ++ ET G+L + Sbjct: 66 LRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGDSTFLAQ 125 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + M +P D IP + + + L + + G PHA+ V DDL Sbjct: 126 IHMPDPAFDCPGIPATG-------EGVYQQTIAGLTV---HATNTGVPHAVVIV-DDLAA 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ + HP F +G N++ +VT +++ +RT+ERGV T CG+ A AS + Sbjct: 175 VDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGATASAAVA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V+V+ GG L I M G A + G++ + Sbjct: 235 HRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277 >gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132] gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132] Length = 283 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 27/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R +++ A + D + + + + S+ Sbjct: 8 VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN----RDGSIS 117 N DGS + CGN RC + + + F T G + AK +G + Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDGPEEGRVK 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + P+ I + V+ L G PH + FV DD+ Sbjct: 128 VQLTPPLRTETDI---------------VIDVDGSPL-TVHFTDTGVPHTVVFV-DDVKS 170 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D+ G + H F G N++ A+V +++ LRT+ERGV T ACG+ A A+ + Sbjct: 171 VDIMDLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLL 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L T + G +L + +N VF+ G A+ ++G+ +K Sbjct: 231 AHTLGLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277 >gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 270 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 3 SKINFVKMHGLGNDFVIVNKRDLSSSHDLSQLAKNMADRHTGIGCDQFIIYEEHDDF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T L+ N + +ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S D++ + + L+ V +GNPH + F L D Sbjct: 120 SVSFNEAWMP---SRDRI----WEFAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F++GVN++ A V + L WE+GVGLT ACGS AC S A L Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGLKLGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V G L ++ +N ++ M G A G+ Sbjct: 230 IHSPSTVVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266 >gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] Length = 289 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 92/296 (31%), Positives = 145/296 (48%), Gaps = 28/296 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + LS D ++LI A D + Sbjct: 1 MHFTKMEGLGNDYVYVNCFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFSM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118 + N DGS + CGNG+RCV +++ + + + ET+ GI + + R ++V Sbjct: 59 AVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVTV 118 Query: 119 DMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P + + + + +KM +R + F+R VSMGNPHA+ + L Sbjct: 119 DMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIR----VSMGNPHAVVW----LDG 170 Query: 178 YDLAS---------FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D+A G L+ KH F G N+ RV + + +R WERG G T ACG+ Sbjct: 171 LDVACVTDGEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGTG 230 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 ACA+ A + TN V+V++ GG L IE+ N + MTG A+K ++G++DI + Sbjct: 231 ACAAAAACMAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDIFS 286 >gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 280 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN L+ D + + + I L + D I + ++ Sbjct: 1 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120 ++ N DGSE + GN +R +L ++ +SF+ T G + + NR+G I + M Sbjct: 59 KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ D + I L + + F+ G + VS+GNPH + + D++ + Sbjct: 119 GQLSFDSEKIGLTGPKREALHEYFNFGGEEYA----CTCVSVGNPHCVI-ITDEISRAKV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ + L Sbjct: 174 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG L + +N +V M G K +L Sbjct: 234 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 272 >gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] Length = 285 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 12/275 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 G+GN LV D + + L + D ++ +++ N Sbjct: 8 YHGLGNDYLVFDPNHNELKLDEANVKMLCDRNEGLGADGVL--EGPILKEDGMHVKVWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125 DGSE ++ GNG+R ++L +++K+F T G + N DGS + V MG+ Sbjct: 66 DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLSF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 126 WSDEIPVIGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N I +V E++ + +ERG G T A G+ ACA+ + L TN Sbjct: 181 YSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGLTNSK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V M GG L +E D+ +V+MTG+ + L Sbjct: 241 VIVHMPGGELQVEVEDDWNVYMTGDVFYIAKVTLS 275 >gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5] Length = 278 Score = 250 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 21/276 (7%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF KM G+ +++D+RG + I + L F++++++ D +DA+ + Sbjct: 4 DFQKMHANGDDFVIVDLRGQENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAAT--QLT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF---ETIRGILVAKENRDGSISVDMGE 122 N DGS + +CG+ R V ++ F +T RG+L DG ISVDMG+ Sbjct: 62 FWNSDGSMLDACGSATRGVAW----KLAGNRLFFRRRQTNRGLLTCFGELDGRISVDMGK 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+L W+ +P+A+ D + P SMGNPH FF+E DL D Sbjct: 118 PLLHWRDVPIAQEADTLKL----------PLPGAPSACSMGNPHCTFFIE-DLEAVDAKM 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G HP+F + N+ +V S + LR WERG G+ GS +C +VV Sbjct: 167 RGLEFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGLL 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V V+ GG + + W VF+TG + G Sbjct: 227 TSSVDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGT 262 >gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp. lavendulae] Length = 287 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 122/284 (42%), Gaps = 10/284 (3%) Query: 1 MQS-SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M++ S + F KM G GN +V+D+R D + + AL+ D ++ I + + A Sbjct: 4 MRTPSTLPFTKMHGAGNDFVVLDLRDGPDP-SPELCRALADRHKGVGCDLVLGIREPRSA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116 A I DGS CGNG RCV + + F ++ G + Sbjct: 63 RAVAAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPRFALDSPSGTHEVDVLDADTF 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + P + IPL F + + VSMGNPHA+ V DD Sbjct: 123 RVALAVPRFAPESIPL---FGHDGEQDLYEADLGDGTRVRFAAVSMGNPHAVIEV-DDTA 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G + +F VN+ ARV S + + LR E G G T ACGS ACA+ Sbjct: 179 TAPVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVL 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + +R VSV + GG L I W D+ V MTG A +EG Sbjct: 239 MRRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282 >gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] Length = 264 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 132/287 (45%), Gaps = 32/287 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++F KM G GN +VID R N+ + ++A+ T D ++LI + A D Sbjct: 1 MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG CGNG RC V F R + FE G A+ S+ + Sbjct: 59 RMNYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLH 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M P K RD H G + V G+PHAI +V D+L D Sbjct: 119 MLPP--------------KNFRDDLHAGA------WSCHFVDTGSPHAIAYV-DNLDQMD 157 Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + + G + + +F EG N++ VT+ ++L +RT+ERGV T ACG+ A+ + S Sbjct: 158 VFTEGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSY 217 Query: 238 CLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 L K + V V + G L++ ++D + +++ G A+ ++G + + Sbjct: 218 RLGKVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264 >gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] Length = 268 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 16/265 (6%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 + + A + + D ++LI + A V +R+ N DGSE +SCGNG+RCV + Sbjct: 8 EEELALVAEKVSNINTGIGADGMILICPSEVAPV--KMRMFNSDGSEGKSCGNGLRCVAK 65 Query: 87 FLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDK-M 139 + + FT ET+ GI+ A+ + + +DMG P L +P+ + Sbjct: 66 YAYEHKLVAETVFTIETLAGIVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGETPF 125 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 R+ F ++F VSMGNPHA+ FV DD+ L + G +L H MF E VN+ Sbjct: 126 IREDFLYNNHRYVFTG----VSMGNPHAVIFV-DDVEEAPLTTLGPVLETHEMFPERVNV 180 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257 + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L+I Sbjct: 181 EFIEIVNGNEMNFRVWERGSGITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDLMI 240 Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282 W + +V M G A+ G + K Sbjct: 241 AWAEEGNVLMKGPAEVICRGVYEYK 265 >gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7] Length = 307 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 35/305 (11%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD---------AINALSTDDNTHFDQIMLI 52 ++ + F KM G+GN + +D + + A+ D ++ I Sbjct: 5 ENMRLFFTKMHGLGNDYIYMDGFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFI 64 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110 ++A+ + + N DGS CGNG+RC R+ +SF +T GI Sbjct: 65 QPSEEAA--FRMEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGIRSVYI 122 Query: 111 NRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + S+ VDMG + L ++ ++ PV + VS GN Sbjct: 123 RKTDEGEHITSVRVDMGVMANLGEQRVLLKAKEEWTDFTGGSFPVQY--------VSAGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA-----RVTSLESLDLRTWERGV 219 H IFFVE+ + + L L+ P +GVN+ A VT + + +R ERG Sbjct: 175 RHCIFFVEN-VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGS 233 Query: 220 GLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G T ACG+ ACA A+ + V ++ GG L + + + M G A+ +EG Sbjct: 234 GETMACGTGACAVTAAAVWQGYCRYDENVEIRQPGGILTTAYLADGRMLMEGPAEYVFEG 293 Query: 278 KLDIK 282 DI Sbjct: 294 YFDIP 298 >gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 295 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 10/285 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + + + K +GN LVI ++ ++ + + D +L+ + S Sbjct: 13 KQKKIKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDG-ILVGPLESESS 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-IS 117 D +RI N DGSE + GNG+R RFL + + FT ET+ G +V + +G ++ Sbjct: 72 DFRLRIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVT 131 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ IP A ++ R+ I + ++GNPH + E Sbjct: 132 VEMGKVSFLSTKIPAAGEEREVLREHMDISGATFEYC----AATVGNPHCVILCEKSTPE 187 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G L+ P F N+ + ++ + WERG G T A GS++ A+ + Sbjct: 188 L-ARCYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAY 246 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L N ++V M GG L I + + MTG + EG +D + Sbjct: 247 KLGFCNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMDPE 291 >gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] Length = 274 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 141/266 (53%), Gaps = 4/266 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ +K T T G L +K + + ++G P + Sbjct: 61 FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W+ IPL++ D D + I N+ +++GNPH IFFV DD+ +DL + G Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271 ++ + G L I + N + M G Sbjct: 239 TDIEFVLGSLTISIDERNSIHMKGPV 264 >gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.] Length = 282 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 35/287 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R + S + + D +LI + A D Sbjct: 11 IHFFKMSGSGNDFIIIDNRENLIEDKGLASFITKVCARRMSVGADGFILIENCDSA--DF 68 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS + CGNG RC F +++ + +F T GI+ A+ DG + V+M Sbjct: 69 KWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVT-DGRVKVNMM 127 Query: 122 EPILDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +P IPL + + ++ G PH + + DD+ D Sbjct: 128 DPTYCKYDYQIPLKKGPITV------------------SSLNTGVPHVVI-ITDDIEGAD 168 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + H + G N++ S ++ +RT+ERGV G T ACG+ + AS + + Sbjct: 169 VDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASALVAA 228 Query: 238 CLHKTNRAVSVKMLG-GGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 C +K + V G L I + +N +++ G+A+ ++G+L Sbjct: 229 CKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275 >gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch sediment'] Length = 274 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 123/282 (43%), Gaps = 30/282 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID R H +I A + D ++L+ A D +R Sbjct: 6 FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVA--DFRMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I+N DGSE + CGNG RCV RF + FET+ GI+ A + + + + P Sbjct: 64 ILNADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWVDG-SKVKLQISRP- 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + I L +S + H+ ++ G PH + F DL + + G Sbjct: 122 ---QGIRLHQS--------IEVDGAAHVV----HSINTGVPHVVLF-STDLEAVPVRTLG 165 Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + HP F G N++ A +L +RT+ERGV T ACG+ AS + + L Sbjct: 166 RTIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLV 225 Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 V V++ G L + N VF GE + ++G+L Sbjct: 226 ASPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267 >gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ] Length = 265 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 25/283 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASV 60 S+ + F K G GN +V+D R + A+ D ++ ++ Sbjct: 4 SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSD--EY 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + +N DG EV CGNG R + F + + F F+T G+ + + G I ++ Sbjct: 62 DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M + I + + ++ F + G PH ++F+ D L + Sbjct: 122 M-----------------TQLSEINTIDVSDLITSKDSFFMDTGVPHCVYFL-DSLDNIP 163 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 L +G + FSEG N + + L +RT+ERGV G T ACG+ A A A Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+K + + + GG L + + ++ V+++G+ +K + G ++ Sbjct: 224 LYKQIDHIKIDVPGGELEVLF-EDGKVYLSGKVEKIFSGVFEV 265 >gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] Length = 310 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 11/284 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 + V F K G+GN +VID + +++D + + + D I+ F + Sbjct: 22 KGGQVQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILF-GPFAGSRG 80 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENR-DGSI 116 D +RI N DGSE + GNG+R R+L + F +T G++ A + DG I Sbjct: 81 DFGLRIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLI 140 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG + IP+ ++ + + ++ ++GNPH + D++ Sbjct: 141 TVDMGTVSFEAADIPVTGITGEVLNQPVCVKGRDLVYCG----ATIGNPHCVVLC-DEIS 195 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 G+ L P F N+ +V ++ + WERG G T A GS+A AS + Sbjct: 196 DQMALELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSASASAAVA 255 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + ++++ V M GG L I D+ + +TG A K G L Sbjct: 256 RRIGVCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGTLS 299 >gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 267 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 25/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R I A D I+ A D + Sbjct: 1 MKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA--DMKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117 N DGS + CGNG+RC+ R++ + + + T ET G+ D S+ Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQVSSVQ 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+ + + +R I +F R V++G PH VED + Sbjct: 119 VKMGKAEWE----------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVEDFMKD 164 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + + V Sbjct: 165 EELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQ 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K + GG + +E D+ V + G+A + G +D+ Sbjct: 225 HLQKISGEAHFYTEGGDVFVEVKDD-VVMIYGKANFVFAGDIDV 267 >gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] Length = 301 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 35/301 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDN-THFDQIMLIHDFQD----- 57 V+F KM G GN ++ID R + AL D ++++ Q Sbjct: 20 VEFCKMTGTGNDFILIDNRRARLAPALMPALAKALCCRRRSVGADGLIVLSPSQRVDAAL 79 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSI 116 +D N DGS + CGNG RC RF S + F+T+ G + A Sbjct: 80 GKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIGLAGPELIFDTLAGPIRAWV------ 133 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 G + +L P +D + R IG V+ G PHA+ V DDL Sbjct: 134 ----GRQTVTLELTPPTGWYDDL---RLEIGGR----TMTIHGVNTGVPHAVVPV-DDLS 181 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ ++G + H F G N++ L++RT+ERGV T ACG+ A AS + Sbjct: 182 SADVKNWGREIRFHRHFAPAGTNVNFIAAR-HGRLEVRTYERGVEDETLACGTGAVASAL 240 Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIKK 289 +G L ++V + G L I + + V + G A ++G L W+ Sbjct: 241 MAGRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGAFAWLAN 300 Query: 290 N 290 Sbjct: 301 Q 301 >gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] Length = 262 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 83/283 (29%), Positives = 119/283 (42%), Gaps = 31/283 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G GN L+ D ++ A A D I++ AS D Sbjct: 1 MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI-SVDM 120 + N DGS + CGNG+RC+ R+ R + ET G+ G V+M Sbjct: 59 MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLEGGRASRVEM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178 G P + + H F+R VSMGNPHA+ F+ E+ + Sbjct: 119 GSPAFGAP-----------------VALLGHRFVR----VSMGNPHAVAFLPAEEAVERL 157 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL S G + + P F N+ V L +R WERG G T A GS +CA+ A+ Sbjct: 158 DLRSVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIR 217 Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279 V V + GG + +EW + + ++M G A+ EG+L Sbjct: 218 EGLARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260 >gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 288 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52 M +S + F K G N +++ + + + L D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 53 -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + + F+ N DGS + CGNG+R +L ++ T T G Sbjct: 61 EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG +L + + ++ V+MGNPHA+ Sbjct: 121 LAKNGDITVSMGRALLPGESVTVSVGDRS----------------WPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+D + DL + ++ ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVDDLDHAGDLLT-APPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 224 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 281 Query: 283 TGKWIKKN 290 W++ + Sbjct: 282 -RAWLETS 288 >gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 75 QSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 CGNG RC RF L ++ T G +V D + V+MGEP + +P Sbjct: 1 SQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVP- 59 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 F ++ +I + VVSMGNPH + V D++ + + G +L H Sbjct: 60 ---FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVETLGPVLESHER 114 Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252 F E N+ +V E + LR +ERG G T ACGS ACA+V V V++ G Sbjct: 115 FPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPG 174 Query: 253 GGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 G L I W H ++MTG A ++G + + Sbjct: 175 GRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 204 >gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 284 Score = 247 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + +T + I + D I+L + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121 RI N DGSE + GNG+R R+L + K F+ ET GI+ + G ++ V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + F ++GNPH + + DD+ Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-------ACGSAACASVV 234 +FG + +P+F N+ +V ++ + WERG G T + Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSA--------AAA 226 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 227 TAHKLGLCDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGELS 272 >gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 270 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 86/272 (31%), Positives = 119/272 (43%), Gaps = 9/272 (3%) Query: 11 MEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D+R G + A DQI+ I + A I N Sbjct: 1 MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS + CGNG RCV +L + + F ++ + G +V MG P D Sbjct: 61 DGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQFDP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPLA D + H VSMGNPHA+ V + + G LL Sbjct: 121 PQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAAPVERVGTLL 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V + R V Sbjct: 176 QQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVERDVQ 235 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 V + GG L I W D+ V M+G A ++G+ Sbjct: 236 VSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 267 >gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24] Length = 289 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 120/305 (39%), Gaps = 38/305 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ ++ A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 RGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++G ++V MG +L + ++ + V+MGNPHA+ FV Sbjct: 122 KNGDVTVGMGRALLPAGDVEVSVGERE----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D + DL + A + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 ADLAHAGDLYA-PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + A +V + GG L+I + + MTG A EG+ D Sbjct: 225 VAVATARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD---S 281 Query: 285 KWIKK 289 W++ Sbjct: 282 AWLEG 286 >gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] Length = 279 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 34/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALSTDDNTHFDQIMLIHDFQ 56 + F K+ G GN +V D R + I + D ++LI Sbjct: 1 MRFVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114 D D + N DGS CGNG RC VRF + + FET+ G++ A+ +G Sbjct: 61 DPQNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGK 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V + EP ++ + + + ++ + ++ G PH + V DD Sbjct: 121 RVKVLLTEPH-SYREMQIKVNGTEI----------------SGSFINTGVPHFVMLV-DD 162 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 L ++D+ ++G + H F G N++ + S S+ +RT+ERGV T ACG+ A AS Sbjct: 163 LENFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATAS 222 Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 + + + V VK GG L I++ VF+ G K ++G L Sbjct: 223 AIVAYQKGLVKKKPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272 >gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii] gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii] Length = 289 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 129/284 (45%), Gaps = 16/284 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F + G+GN +V+D +T I + D I+ + + A D +RI Sbjct: 5 FFRGHGLGNDYVVMDPTELTFTLTPGKIRGICDRHWGLGSDGILALVPSKKA--DFGLRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI-----LVAKENRDGSISVD 119 N DGSE + GNG+R R+L + K+++FT ET G+ + + + +V+ Sbjct: 63 YNPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVE 122 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177 MG +P S D++ + F VS+GNPH + F + + Sbjct: 123 MGRATFQPSALPCTLSVDELIQQPIEAAGRALQFTG----VSVGNPHCVIFKQAGETWTR 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L + G +L HP+F + N+ +A T + + + WERG G T A GS++CA+ A+ Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V+VKM GG L IE + + M G + G L Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGALSP 282 >gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] Length = 289 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 120/305 (39%), Gaps = 38/305 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ ++ A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 RGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++G ++V MG +L + ++ + V+MGNPHA+ FV Sbjct: 122 KNGDVTVGMGRALLPAGDVEVSVGERE----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D + DL + A + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 ADLDHAGDLYA-PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + A +V + GG L+I + + MTG A EG+ D Sbjct: 225 VAVATARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD---S 281 Query: 285 KWIKK 289 W++ Sbjct: 282 AWLEG 286 >gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] Length = 263 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 9 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + IL + D SI V+MG+P+L Sbjct: 63 YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV D + L S G Sbjct: 123 KWHKIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S T + Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258 >gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] Length = 271 Score = 246 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 33/289 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ +++ F KM G GN +VID R G + + I L T D ++++ ++ Sbjct: 1 MKRNIL-FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSEN- 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSI 116 D +R N DG CGNG RC+ +F +K FE A DG I Sbjct: 59 -HDFAMRYYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEI 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++M P K RD F + +F V G+PHAI +VE+ L Sbjct: 118 KLNMLVP--------------KDFRDAFSVDGHECVF------VDTGSPHAILYVEN-LD 156 Query: 177 HYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 + G + + F G N++ ++ S E + +RT+ERGV T ACG+ A AS + Sbjct: 157 ETHVVEIGQKIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASAL 216 Query: 235 ASGCLHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 S L K + V V + G L I + + HV ++G A + ++G++ Sbjct: 217 MSYRLGKVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEVS 265 >gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] Length = 300 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52 + +S + F K G N +++ + + + L D ++ + Sbjct: 13 VSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 72 Query: 53 -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + + F+ N DGS + CGNG+R +L ++ T T G Sbjct: 73 EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 132 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG +L + + ++ V+MGNPHA+ Sbjct: 133 LAKNGDITVSMGRALLPGESVTVSVGDRS----------------WPARNVNMGNPHAVA 176 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+D + DL + ++ ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 177 FVDDLDHAGDLLT-APPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 235 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 236 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 293 Query: 283 TGKWIKKN 290 W++ + Sbjct: 294 -RAWLETS 300 >gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] Length = 285 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 12/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + + G+GN LV D + + + L + D I+ + Sbjct: 3 ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGIL--EGPLMEEKQMAV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDM 120 RI N +GS + GNG+R ++L +++K +T T G + + N +GS + V M Sbjct: 61 RIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ IP+ ++ + G L VS+GNPH + ++ ++ + Sbjct: 121 GKLSFWSDEIPVIGERRQVINEDMVFG----RTLYPATCVSIGNPHCVIPMQ-EISEPLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + F +N + V + ++ + T+ERG G T A G+ ACA+ + L Sbjct: 176 CKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAYKLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 T+ V V M GG L +E D+ +MTG+ Sbjct: 236 LTSNKVIVHMPGGELQVEIGDDWEAYMTGDVFYVA 270 >gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi] gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi] Length = 262 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 8 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 61 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + IL + D SI V+MG+P+L Sbjct: 62 YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV D + L S G Sbjct: 122 KWHKIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S T + Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257 >gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] Length = 270 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 119/279 (42%), Gaps = 18/279 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++F KM G+GN +++ R N++ A N DQ ++ ++ + Sbjct: 3 NKINFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNNV--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T + L+ ISV++G Sbjct: 60 YTMIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + +P RDR + L L+ V +GNPH I F L D Sbjct: 120 NVSFNETWMP--------SRDRIWAFAERYMLDLKETMCVDIGNPHLIIF--SKLEPQDQ 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +F +GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 170 KIIGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLG 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V G L I ++ ++ M GEA G+ Sbjct: 229 FVHSPSTVVFKYGNL-IMQEEDGNIIMQGEATFVMRGEY 266 >gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1] gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1] Length = 291 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 38/309 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ + + A+ L D ++ + Sbjct: 1 MTQTSLSFLKGHGTENDFVIVPDPDNAIELPATAVAKLCDRRAGIGGDGVLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L ++ T G+ Sbjct: 61 EAKAMAGEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++ G ++V MG + ++ V+MGNPHA+ Sbjct: 121 LDKRGDVTVSMGRAEFPEGEVTVSVGDRS----------------WPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV D L + + GVN+ + +R ERG G T +CG+ A Sbjct: 165 FV-DSLDDAGTLYDAPPFSPASAYPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + +V + GG L+I + + + MTG A G+ D Sbjct: 224 CAVAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD-- 281 Query: 283 TGKWIKKNE 291 W+ + Sbjct: 282 -AAWLAETA 289 >gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 245 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 117/321 (36%), Gaps = 49/321 (15%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 + + F K G N +++ +++ A+ + D ++ + Sbjct: 4 APRLSFLKGHGTENDFVIVPDLDGSLELSAAAVARICDRRAGIGGDGLIRVVRSSAHPEA 63 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 64 RAMADQAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRVHIA 123 Query: 112 RD---------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 +D G I+V MGE L + Sbjct: 124 KDVGDAAQPGEATAGPDGPITVVMGEATL------------PGPGPEAEMTVTVGEQSWP 171 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 V+MGNPHA+ FV+D DL + + + G N+ + +R E Sbjct: 172 ARNVNMGNPHAVAFVDDLAQAGDLLA-APAVRPASAYPHGTNVEFVVDRGPRHVAMRVHE 230 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTG 269 RG G T +CG+ ACA +VA+ + AV +V + GG L+I + V MTG Sbjct: 231 RGSGETRSCGTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTG 290 Query: 270 EAKKEWEGKLDIKTGKWIKKN 290 A EG+LD W++ + Sbjct: 291 PAVIVAEGELDP---AWLRTD 308 >gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 225 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 15/232 (6%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAK 109 + I+N DGS CGNG+RC +++ +K +S T ET G IL + Sbjct: 3 NSDVAQIKMIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLE 62 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + ++++MG P + + IP AR +++ R + + N + MG PH I Sbjct: 63 NHSIKEVTINMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTII 117 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 F L Y++ G + K F +G N++ V S + ++TWERG G T ACG+ + Sbjct: 118 F--GKLEDYNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGS 174 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CASV+A+ L T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 175 CASVIAANKLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225 >gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 264 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 95/269 (35%), Positives = 139/269 (51%), Gaps = 17/269 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + F KM G GN ++ID R ++ ++ + DQ+++I A+ Sbjct: 6 TDKIPFVKMHGTGNSFVIIDSRSANN--LDWNYRQIADQGS--CDQVIIITMSNAAN--C 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMG 121 F+ I N DGS + CGN RCV + + T E IL + D SI V+MG Sbjct: 60 FMHIYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P+L W IPL+ D + P+ L+ P V++GNPH +FFV D++ L Sbjct: 120 KPLLKWNEIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQ 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH- 240 + G L H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS Sbjct: 173 NLGPKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKC 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 + SV + GG LLIEW N + MTG Sbjct: 233 LATKQTSVHLPGGHLLIEWSKN--ILMTG 259 >gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] Length = 284 Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 33/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K G GN ++ID R + A + D ++L+ + D Sbjct: 16 IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLE--RSDRADFV 73 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG+E + CGNG+RC+ +FL ++ FT E + + DGS+SV M Sbjct: 74 MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133 Query: 123 -PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + W I L+ + R FH+ + G PHA VE L +DL Sbjct: 134 APEISW-DIELS-----IGRKTFHVD-----------FLDTGVPHATLSVE-KLSAFDLD 175 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVT--SLESLDLRTWERGVG-LTAACGSAACASVVASG 237 + G + H F +G N+ + + + +RT+ERGV T ACG+ A A + + Sbjct: 176 AIGPKIRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAW 235 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 + + +++ G L + + + + M G A+ + G I Sbjct: 236 TKEQIANPIRIQVASGDILEFKISGSLGRIDQIVMKGPAEFIFRGNFSI 284 >gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] Length = 277 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 35/290 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQD 57 + F KM G GN ++I+ R + + + + D ++LI +D Sbjct: 2 KKIPFFKMNGSGNDFIIINNRRNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--KD 59 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSI 116 D R N DGSE + CGNG RC RF + + S F T+ G++ A+ ++ Sbjct: 60 NEYDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNTV 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + +P K ++ + V+ ++ G PHA++FV Sbjct: 120 RVQLTQP--------------KDYKENIELDGVDMPL----SFINTGVPHAVYFVSSVDV 161 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 + G H F EG N++ V + +L +RT+ERGV T ACG+ A AS + Sbjct: 162 VDV-KTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASAL 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLL-----IEWHDNNHVFMTGEAKKEWEGKL 279 + K V V G L IE + V++ G+A + G + Sbjct: 221 IAILKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270 >gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 274 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F+K+ GN ++ID R ++ + A + D ++L+ + A D Sbjct: 3 INFSKLTAAGNDFILIDNRENIIAQEDCQALAKKLCDRKYSIGADGLILLE--KSACKDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ N DGS CGNG R + +F + FET G++ A+ + + +D+ Sbjct: 61 KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K I + + + D + ++ G PH + FV DD+ + D+ Sbjct: 121 NPRDLKKDIKVEVNGKEFDVN----------------FINTGVPHVVIFV-DDIENIDVF 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G + +H F G N++ +V +L +RT+ERGV T ACG+ AS + S Sbjct: 164 GYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIISVLK 223 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 V V GG L + + N +V + G A ++G + I++ Sbjct: 224 GFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272 >gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] Length = 281 Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 21/289 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHD-FQ 56 M V F KM+G GN ++ID R + A + D + I + + Sbjct: 4 MFGKSVPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPE 63 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +D + N DGS + CGN RC R + I G + G I Sbjct: 64 GSGLDFVWQFYNSDGSRAEMCGNASRCAGRLAHALE---------IAGEQHVFGSDAGPI 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + P L+ + L + + I + + + G PH + V D+ Sbjct: 115 KVQV-FPELEEVKVQLTPPQGLVVKQTLEIDGEEYEY----HFANTGVPHVVVQVA-DVE 168 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ G H F G N++ ++ +SL +RT+ERGV T ACG+ A V Sbjct: 169 EVDIKKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYACGTGVSAVQV 228 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T+ AV V+ GG +L ++ +VF+ G A+ + G++ +++ Sbjct: 229 TLYEQGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLES 277 >gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT] gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT] Length = 279 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 29/288 (10%) Query: 4 SMVDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + ++F K+ G GN ++ID R D + + + D ++ + + A Sbjct: 2 NQLEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA- 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRD---GS 115 D +R+ DGSE + CGNG+RC+ + + F+ ET+ G++ + RD Sbjct: 61 -DIGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVRRDRKGFW 119 Query: 116 ISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 V+MG P + IP +F K+ F + V+ G PHA+ FVE+ Sbjct: 120 ARVEMGIPRFERSEIPADGEGTFLKVPLHGFEV-----------SAVNTGVPHAVIFVEN 168 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 + + F EG N++ R+ L++RT+ERGV T +CG+ + A+ Sbjct: 169 --LDIPVEQIAPKIRHSSCFPEGANVNFVRL--GNHLEVRTFERGVEAETLSCGTGSVAA 224 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L V V GG L I + FM G A G + Sbjct: 225 AAVARRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPAVTVCRGVVS 271 >gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 262 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID R ++ ++ + DQ+++I A D F+ I Sbjct: 8 NFIKMHGTGNNFVIIDSRSTNN--LDWNHRQIADQSS--CDQVIIITMSNAA--DCFMHI 61 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGN RCV + S + E T + IL + D SI V+MG+P+L Sbjct: 62 YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV D++ L + G Sbjct: 122 KWHEIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS + Sbjct: 175 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVAQ 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257 >gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 263 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID R ++ ++ + DQ+++I A D F+ I Sbjct: 9 NFIKMHGTGNNFVIIDSRSTNN--LDWNHRQIADQSS--CDQVIIITMSNAA--DCFMHI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS + CGN RCV + S + E T + IL + D SI V+MG+P+L Sbjct: 63 YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV D++ L + G Sbjct: 123 KWHEIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS + Sbjct: 176 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSLVAQ 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258 >gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653] gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653] Length = 303 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 39/305 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 + + F K G N +++ +++ A+ + D ++ + Sbjct: 4 APRLRFLKGHGTENDFVIVPDLDGRLELSAAAVARICDRRAGVGGDGLIRVVRSSAHPEA 63 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T T G+ Sbjct: 64 RGMAAEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEEGDLTIATRAGLRHIHIA 123 Query: 112 RD--------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + G+++V MG+ +L P + + + ++MG Sbjct: 124 KAAPEGAPDSGAVTVGMGKAVL-----PEPGPDGDVTVEV-------GDRTWSARNINMG 171 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ FV DDL + + +G N+ + + +R ERG G T Sbjct: 172 NPHAVAFV-DDLDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGETR 230 Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +CG+ ACA +VA+ + AV +V + GG L+I + V MTG A E Sbjct: 231 SCGTGACAVMVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVAE 290 Query: 277 GKLDI 281 G+LD Sbjct: 291 GELDP 295 >gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] Length = 268 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 130/289 (44%), Gaps = 33/289 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K+ G GN +VID R ++T IN L T D ++LI A+ Sbjct: 1 MKITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIEPS--ATFSF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118 ++ N DG CGNG RC V F + ++TFE A + ++ + Sbjct: 59 SMKYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFEANGNRYDAWVLGEENVKL 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 M P + +D + F ++ G+PHAI ++ DL Sbjct: 119 KMLAPQ---------GFKENLDLEG-----------EQCFALNTGSPHAIIYIS-DLDAV 157 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ G+ + F +G N++ +TS SL LRT+ERGV T ACG+ A A+ + S Sbjct: 158 DVNKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMS 217 Query: 237 GCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 L K + V V + G L +E++++ + VF++G AK +EG I+ Sbjct: 218 HKLGKISSTTVQVTVKSGDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266 >gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] Length = 279 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 120/287 (41%), Gaps = 33/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R + + A + D + LI A D Sbjct: 8 IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 R N DGSE + CGNG RCV RF + FET+ GI+ A D + ++ M Sbjct: 66 KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMRFETLAGIVEATV-ADTTATIKMT 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + FD+ + +G L V G PHA+ FV DD+ D+ Sbjct: 125 SPH--------SFRFDR----QIEVGGQ----LFMVHSVDTGVPHAVIFV-DDIDEVDMV 167 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L HP+F G N++ T +RT+ERGV T ACG+ A + + Sbjct: 168 GLGRQLRHHPVFAPMGTNVNFVGRTGDG-FRIRTYERGVEDETMACGTGVVAGALIAAVK 226 Query: 240 HKTNRAVSVKMLGG-GLLIEWHDN-----NHVFMTGEAKKEWEGKLD 280 + V++ GG L +++ + V + G A + G+L Sbjct: 227 GYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGELT 273 >gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18] Length = 275 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 4/266 (1%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM+G+GN ++ D R ++T D I +S N DQ++ I + ++ + + N Sbjct: 7 YKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDNDKNNNT--SLTFYN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG E+ +CGNG RC L K + T GIL A+ + ++MG+P W Sbjct: 65 SDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQPNFKWG 124 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL++ D + I + + F +S+GNPH IFFVE D ++L G + Sbjct: 125 KIPLSKEMDN-KNLKIKINSTDDKEIEGGFSLSVGNPHIIFFVE-DFNKFNLKEIGPKIE 182 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 H F E N+++A + + + + ++ WERG GLT ACG+AACA+ VA L R V + Sbjct: 183 NHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNERYVDI 242 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274 + G L I+W+ +N+++MTG+ + Sbjct: 243 EFQEGLLNIDWNADNNIYMTGKISEV 268 >gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 280 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 29/291 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 M + F KM G GN +V+D R +++ N + D ML+ + Sbjct: 1 MFERGIPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNI 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSI 116 A D +R N DGSE + CGNG RC+ RF +FET+ GI A+ N++ Sbjct: 61 A--DFKMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQN--- 115 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 SV + P + + + L + ++ + + V +G PH ++FVE+ + Sbjct: 116 SVKVKFPDVPLQALKLNQPYEW-----------DGPSGVYHYGV-VGVPHTVWFVENVIA 163 Query: 177 HYD--LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 D L +G ++ F G N++ ++L +RT+ERGV T ACGS + A+ Sbjct: 164 IADDQLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAA 223 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + +G L + V++ GG L I H + V++ G + EG L Sbjct: 224 AIIAGILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274 >gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] Length = 278 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 121/291 (41%), Gaps = 34/291 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---------ITSDAINALSTDDNTHFDQIMLIHDFQ 56 +DFAK++G GN ++ID R + + D ++LI + + Sbjct: 1 MDFAKLQGSGNDFILIDNRDGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIEEPE 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114 D + D + N DGSE + CGNG RC VRF + +FET+ G++ A+ G Sbjct: 61 DNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRAEVLEGGK 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V + P + ++ G PH + V+ D Sbjct: 121 RVKVQLTPPS-----------------EPLEKTLRVEGTDLEGVFINTGVPHFVVPVK-D 162 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232 + D+ G + H F +G N++ + +++ +RT+ERGV T ACG+ A A Sbjct: 163 IDKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGATAG 222 Query: 233 VVASGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + + +R V V L +++ +N VF+ G K +EG L Sbjct: 223 AIVAYLKGLVSRKPVQVITKSEEVLGVDFDENFREVFLNGAVYKVFEGTLS 273 >gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 261 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +VI+ + +TS I LS FDQ++L+ D RI N +G+EV+ C Sbjct: 1 MVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC FL + +K + T + L + + I V+M EP + + S Sbjct: 61 GNGARCFGLFLLLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEPDFKFYNL---SS 117 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + F I +N + N +VS+GNPH I V+ + + + GN + K+P+F E Sbjct: 118 LQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNIIGNNIEKNPIFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 GVN+S + + + + LR +ER VG T ACGSAACA+V + V V++LGG L Sbjct: 175 GVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKL 234 Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +I W ++M G AK ++G + I Sbjct: 235 IIIWKGFGTPLYMVGPAKHVYDGYIYI 261 >gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] Length = 286 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 87/295 (29%), Positives = 132/295 (44%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--------NALSTDDNTHFDQIMLI 52 M ++ + F K+EG+ N LV+D+R + + + D ++LI Sbjct: 5 MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKEN 111 Q A A + ++N DGS + CGNG+RCV L R +S F +T G Sbjct: 65 GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRPCAVT 124 Query: 112 RD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 R + V+MG + I + + D R + V +GNPH Sbjct: 125 RAPGSASARVRVEMGT-----RRITGEHTLELEDAPRTFV------------AVDVGNPH 167 Query: 167 AIFFVEDDLYHYDLAS-FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 AI FV+ LA G + HP+F N+ AR + S+ L WERGVG+TAA Sbjct: 168 AIAFVDASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAA 227 Query: 225 CGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CG+ ACA++ A+ +AV +++ GG L IE + + MTG A+ + G Sbjct: 228 CGTGACATLAAAIHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRG 282 >gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] Length = 281 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 33/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61 + F KM G GN +++D R T+ A A+ + D ++LI + ++A D Sbjct: 5 ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESKEA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG RC RF R + F T+ GI+ A+ ++ + M Sbjct: 63 FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEAEITG-TNVGLTM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + D P +V+ G PHA+ V DD+ + Sbjct: 122 TPP-------------ENLQLDLRLDDPAGGEQT--VHLVNTGVPHAVLLV-DDIDVVPV 165 Query: 181 ASFGNLLAKHPMF-SEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 +G HP F G N++ + + L +RT+ERGV T ACG+ A A+ + + Sbjct: 166 KEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAALVA 225 Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKL 279 CL T V G L+I +H V + G A +EG+L Sbjct: 226 SCLDLTAAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273 >gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] Length = 267 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 25/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R D L D I+ + A D + Sbjct: 1 MKFWKMEAAGNDFVIFDGRNIKIEDIQDLAKKLCDRHFGVGADGILFCEESSQA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSIS 117 N DGS + CGNG+RC+ RF+ + + + ET G+ V + + Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHISQVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ I + + ++ I + F R V++G PH V++ + Sbjct: 119 VEMGKAIWE----------KEFQKEILEIEGRSFDFYR----VTVGVPHIAILVDEFMKD 164 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G+LL KH F N++ +V + + + ++TWERG G T C + + V Sbjct: 165 EELNYWGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQ 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K V GG + ++ ++ V + G+A + G +D+ Sbjct: 225 RLQKIKGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267 >gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] Length = 285 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 20/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117 + D + +N DGS CGNG RC+ RF + F+T G+ A Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P + + L R + +R G H + V DDL Sbjct: 117 ---TAPENNPSGVRLFVPDITEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVV-DDLDA 172 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 + +G L + P + G N++ + + L LRT+E+GV T +CG+ A+ Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] Length = 260 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 115/280 (41%), Gaps = 27/280 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + FAK GN LVID DN + + + D + I +A ++A R Sbjct: 4 IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILPTSEADIEA--R 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMG 121 +IN DGSE + GNG RCV ++ T G+ + MG Sbjct: 62 LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + +L R + +S GNPH + FVE+ + + Sbjct: 122 KPEIAGELTVKTRHHETTGIQ-----------------LSTGNPHFVIFVEEFEEGWQV- 163 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + +A+ P F G N+ +V SLD+R +ERGVG T + G+ +CAS VA+ K Sbjct: 164 -LADSVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGK 222 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V GG +EW + +TG A G+ I Sbjct: 223 CESPVRVATPGGAQTVEWS--GEITLTGPATIVCTGEFFI 260 >gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] Length = 270 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 27/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + +D +N AI D ++LI A D + Sbjct: 1 MKFIKMQAAGNDYVYVDCFKEKIENPGEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS---ISV 118 + N DGS CGNG RCV ++ +K K+FT ET GI + E +DG I+V Sbjct: 59 DMYNADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGIKYIEIEEKDGVAHYINV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176 +MG+ + + ++ I F+ V +GNPHA+++VE D+L Sbjct: 119 NMGKAFITSEF-----------PEKISINGEEKEFIG----VDVGNPHAVYYVETLDELK 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +L + G +H F + VN V +++ +R WERG G T ACG+ ACA+ A+ Sbjct: 164 GMNLEAVGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAAAFAT 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V V +LGG L I N+ ++M G A+ + G+++ ++ Sbjct: 224 MKKGLCENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269 >gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] Length = 266 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 33/289 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++F+K+ G GN ++ID R ++T INAL T D ++L+ D Sbjct: 1 MQINFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVEPSLH--CDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118 ++ N DG CGNG RC V F + + + F+FE A+ ++ + Sbjct: 59 TMKYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRL 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 M LD + + V+ G+PH + F DD+ Sbjct: 119 HM----LDARDFRYHMEIEGF----------------ACTFVNTGSPHVVIF-ADDINAI 157 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 ++A G + ++ F EG N++ +TS S+ LRT+ERGV T ACG+ A A+ + S Sbjct: 158 NVAEKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIIS 217 Query: 237 GCLHK-TNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 L K +V V + G L + + +N ++ +TG AK ++G + I Sbjct: 218 RKLGKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266 >gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] Length = 273 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 35/289 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDNTHFDQIMLIHDFQDASV 60 + + F KM+G GN ++ID R + A + D ++ + A+V Sbjct: 2 NRIPFWKMQGSGNDFVLIDHRRSFISDGERAGFARKVCAPKFGVGADGLIFLE--SSATV 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D R N DGSE + CGNG RC RF + + FET+ G++ A+ D + ++ Sbjct: 60 DFRWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHAEVL-DRRVKLE 118 Query: 120 MGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + P + IPL+ ++ G PH + + DL Sbjct: 119 LSPPHGLRLGLEIPLSAK------------------TWTGHFINTGVPHVVLPLA-DLEA 159 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 + G + H +F G N++ R + L +RT+ERGV T ACG+ + A+ + Sbjct: 160 APVTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAALI 219 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 + L V V G L I + VF+ G A ++G+L Sbjct: 220 ASRLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268 >gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] Length = 350 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 130/292 (44%), Gaps = 20/292 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 V F KM G+GN ++++ GCH +SD A + DQ ++ ++ S Sbjct: 4 KVPFVKMHGLGNDFVIVN--GCHMPKSSDIHSFAKEISDRELGVGCDQFII---YRQDSD 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I N DGS ++CGN RC+ R L K+ + ++ K +I VDM Sbjct: 59 KINMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +P + + +R+ I P + V + NPH + F L D+ Sbjct: 119 GPPSFESSWMPDSTDLCSL-AERYMIEPKEMI------CVDVANPHLVIF--SKLSKKDM 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 GN K +F +GVN++ AR+ ++L WERG G T ACGS A A+ A+ L Sbjct: 170 GMIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLS 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + G L ++ N+ V M+G A + G+L + K + D Sbjct: 229 FFGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGELLKRAAKLSNEKAD 279 >gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8] gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8] Length = 285 Score = 241 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 20/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117 + D + +N DGS CGNG RC+ RF + F+T G+ A Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P + + L R + +R G H + V DDL Sbjct: 117 ---TVPEDNPSGVRLFVPDVTEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVV-DDLDA 172 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 + +G L + P + G N++ + + L LRT+E+GV T +CG+ A+ Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4] gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4] Length = 273 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 32/287 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +++D R + S I+ L D ++++ + D + + Sbjct: 5 FTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRMVY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGE 122 N DGS CGNG RC RFL + F T G + + + Sbjct: 63 FNADGSRASFCGNGARCFARFLFEMENKDGEQGEVCFMTEAGRITGWISGEAV------- 115 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYDLA 181 I L + R I ++ + G PH + F + ++L L Sbjct: 116 ------KITLPTPKNLTLRIPLEIEGKSYEL----HKIDTGVPHVVLFEDCENLPRSTLE 165 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G+ + H F EG N++ A + +RT+ERGV G T ACGS AS + S + Sbjct: 166 EIGSRIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTASALISHLV 225 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + + V + G L + + + F+ G AKK + G ++I Sbjct: 226 LDMDCPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272 >gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580] gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] Length = 285 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 19/287 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ H ++ A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ ++ SF ET+ G++ A+ D S + Sbjct: 63 MRIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSAT 122 Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L +P+ + ++ G VSMGNPH I F DD+ Sbjct: 123 VDMGEPRLLKSDMPMRGEQGSETINEKMIFGGREMK----GTAVSMGNPH-IVFYLDDIE 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G L+ K F EGVN+ V + L R WERG G+T ACG+ ACA+ V+S Sbjct: 178 KAPLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSS 237 Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + ++V + GG L+I W ++ V MTG A+ EG+ I Sbjct: 238 VLNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFI 284 >gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803] gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803] Length = 262 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 38/287 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVD 61 + F K +G GN ++ID R + + D ++L+ + +D D Sbjct: 1 MKLKFYKYQGTGNDFVMIDNRDKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + + S F I G+ A D +S+ M Sbjct: 61 FKMVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKASIEGD-VVSLKM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + I F + G+PH I F E+ + D+ Sbjct: 120 ----QNVESISENEDF---------------------IFLDTGSPHHILFTEN-VNKVDI 153 Query: 181 ASFGNLLAKHPMFS--EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 G+ + + G N++ + ++ +RT+ERGV T +CG+ A +A+ Sbjct: 154 KKEGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAF 213 Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 KTN V + GG L + + + V+++G A+ ++G++ Sbjct: 214 KSSKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260 >gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 283 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 32/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN ++ID R + A + D ++LI + ++A D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSEEA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 + N DGS CGNG RC RF + R+ F T G++ A+ + ++ + Sbjct: 63 FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISG-TAVLLT 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M P R H+ L V G PHA+ F D++ Sbjct: 122 MTPPGQC--------------RLNLHLAGPTGEEL-TLHTVDTGVPHAVLFC-DEIATVP 165 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +G+ HP F G N++ + L +RT+ERGV T ACG+ A A+ + + Sbjct: 166 VKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVAS 225 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 L + +V G L+I D + V + G A ++G L Sbjct: 226 RLGRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272 >gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] Length = 283 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 78/286 (27%), Positives = 119/286 (41%), Gaps = 27/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R T A + D + + D + +D Sbjct: 8 VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SIS 117 N DGS + CGN RC + + F T G + AK DG + Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGPDAGRVK 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + P I L +D + G PHA + DD+ Sbjct: 128 VQLTPPKGLETNISL-----DVDNTPMTV-----------HFADTGVPHA-VVLVDDVAA 170 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++ G L HP F G N++ A+V ++ LRT+ERGV T ACG+ ACA+ + Sbjct: 171 VNVRELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLV 230 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L T+ + GG +L + +NN +F+ G A+ ++G+L + Sbjct: 231 ANALGLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGELYL 276 >gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG'] Length = 290 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 17/284 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V M +T + I + D I+L+ + +R Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118 I N DGSE + GNG+R +FL + F ET+ G++ A+ NR + V Sbjct: 61 IFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +D + + LA + + P + +S+GNPH +FF ++L Sbjct: 121 DMGKATVDPRSVGLANPDKPFVEELLELAPDLRI---KGTAISVGNPHFVFF-REELDEK 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ S Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L K V V+M GG L I+ + M G + G Sbjct: 237 LGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSGDFSPD 280 >gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] Length = 1411 Score = 240 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 136/316 (43%), Gaps = 40/316 (12%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDAS 59 + + F KM+ GN +VI+ + L D ++LI + + A Sbjct: 1100 EKQKITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA- 1158 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------------KSFTFETIRGIL 106 DA +R N DG+E + GN +RCV ++L + + T ET G+ Sbjct: 1159 -DAKMRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVK 1217 Query: 107 VAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------- 155 + S++VDMG+P+ + IP + + F+ N + + Sbjct: 1218 TLVLYKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAP 1277 Query: 156 --------NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 +++GNPH + F + + G L H +F E N RV Sbjct: 1278 LIVAGNEYRVTCINVGNPHCVVF-SKFVDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGP 1336 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHV 265 L +RTWERG G T ACG+ ACA+ VAS N+ ++VK+ GG L++++ V Sbjct: 1337 NELKMRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYT-GETV 1395 Query: 266 FMTGEAKKEWEGKLDI 281 +TG K ++G+++I Sbjct: 1396 LLTGNTKMCYQGEVEI 1411 >gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 268 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 23/273 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K GN LV + + AI+ + D I++ + + Sbjct: 1 MQFVKYHAAGNDYLVYHD-KTPFDCSMLAISVICDRHRGLGSDGILI--PVIEPGKMLSV 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 +I+N DGSE + GNG+R + R+L + + + F T G + + DG IS+ MG Sbjct: 58 QILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVRCQVLDDGRRISIAMG 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 R ++D R H+ +VSMGNPH + FV+ Sbjct: 118 MATFPENE----RHSMEVDGMRLHLN-----------LVSMGNPHCVVFVDQTTEAL-AR 161 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + + +F N+ V +L ++ WERGVG T + G+++CA+ S L Sbjct: 162 KLGPTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLGF 221 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + V+V M GG + IE ++NHV M G K Sbjct: 222 VDDHVTVHMPGGQITIELDEDNHVLMKGPVCKI 254 >gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 282 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 13/281 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++S + K +G+GN LV+D + I L D ++ + + Sbjct: 1 MENS-ITMIKYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGVLY--GPVEIN 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGS 115 + I N DGSE GNG+R ++L +K + F+ ET+ G + + +R Sbjct: 58 GKMGVHIYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATE 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG+ + IP+ ++ + F ++ +++GNPH I F+ D++ Sbjct: 118 FRVNMGKASFISREIPVTGEVREVINETFTFNKKDYKAT----CLTVGNPHCIIFM-DEV 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA Sbjct: 173 SPEIAKDLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVA 232 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + L T ++V GG + I+ D++ ++MTG + Sbjct: 233 AYRLGLTESRINVNQPGGIIQIDIKDDDTIYMTGSVGYVAD 273 >gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum] Length = 290 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 17/284 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V M +T + I + D I+L+ + +R Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKE-----NRDGSISV 118 I N DGSE + GNG+R +FL + F +T+ G++ A+ NR + V Sbjct: 61 IFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRLFRIQTLGGMVTAEVYPDASNRVDRVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +D + LA + + + P L +S+GNPH +FF ++L Sbjct: 121 DMGKATVDPVSVGLANREKPLVEELLELAPDLRL---KGTAISVGNPHFVFF-REELDEK 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ S Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L K V V+M GG L IE + M G + G Sbjct: 237 LGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSGDFSPD 280 >gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 268 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 25/274 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K GN LV R C + + I+ + D I++ Sbjct: 1 MQFYKYHAAGNDYLVY--RDCVPFDCSKPMISRICDRHRGLGSDGILV--PVIKEGERLS 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120 +RI N DGS+ + GNG+R + R+L + + F T GI+ + +G IS+ M Sbjct: 57 VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVTCQVLDNGQRISIAM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ A +D + P VSMGNPH + FV+ Sbjct: 117 GQAAFAN----TAAFTVDVDGTPLQLHP-----------VSMGNPHCVVFVDQPTETL-A 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ + +F + N+ RV ++L+++ WERGVG T + G+++CA+ S L Sbjct: 161 RQLGPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 V+V M GG ++IE D+ HV M G + Sbjct: 221 LVGPRVAVNMAGGVIMIELDDDYHVLMQGPVCRV 254 >gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] Length = 250 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 38/281 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K +G GN ++ID R D D ++LI ++ D +R Sbjct: 1 MKFYKYQGTGNDFVMIDNRSNTFQ--GDVAALCHRRFGIGADGLILIE--KEEGYDFRMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+E CGNG RC V+F + +F + G A+ D +S+ M Sbjct: 57 YFNADGAEGSMCGNGGRCAVQFASDLGIFEGKTSFIAVDGPHEAEIT-DKKVSLKM---- 111 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + P+ + + ++ G+PH I F E+ + D+++ G Sbjct: 112 -------------------IDVHPLEE--VPEGYFLNTGSPHLIIFTEN-VDAIDVSTEG 149 Query: 185 NLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + + + GVN++ +V S S+ +RT+ERGV T +CG+ A+ + S + Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209 Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279 + V V+ LGG L +++ + V +TG A+K +EG+L Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250 >gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] Length = 285 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 12/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +GN LV+D + + T D I + D I+ D + Sbjct: 1 MKFSKYHALGNDYLVLDPKDAPELPGTDDTIRICHRNFGLGSDGILY-GPIPTERADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSISVDMG 121 RIIN DGSE + GNG+R R+L ++ + FT +T+ GI+ + SI VDMG Sbjct: 60 RIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSIKVDMG 119 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + IP+ D+ I N+ ++ +GNPH + + ++ Sbjct: 120 QVRFGHEHIPVDGPEQSDQNLGHELEINGTNYTT----YIADIGNPHCVVPLP-EISEEL 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G ++ HP F N+ + ++ + WERG G T A GS++ A+ + + Sbjct: 175 ACKDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAVAHRI 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + ++V M GG + IE D+ + MTG A + D + + Sbjct: 235 GLCDETITVHMPGGKIGIEIGDDYAIRMTGPATRVAIMHFDPEALDF 281 >gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] Length = 267 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 25/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R +I + A D I+ + A D + Sbjct: 1 MKFWKMEAAGNDFVIFDGREIEIKDINALAKKLCDRHFGVGADGILFCQESDTA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117 N DGS + CGNG+RC+ RF+ + ++ ET G+ + Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHISQVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ + + I + F R V++G PH V++ + Sbjct: 119 VEMGKAEWE----------KGFQEETLEIEGRSFDFYR----VTVGVPHIAILVDEFMKD 164 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G +L KHP F N++ +V + + + ++TWERG G T C + + V Sbjct: 165 EELNYWGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQ 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K V GG + ++ ++ V + G+A + G +D+ Sbjct: 225 RLQKIKGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267 >gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] Length = 270 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 114/286 (39%), Gaps = 28/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN ++I+ ++ + + L D ++L++ D A + Sbjct: 3 IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLCNRRFGIGADGLILLNPPADEFAQATM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DG V CGNG RC F TF+T G + A + +DG ++ M Sbjct: 63 VYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKA-DAQDGEFTIRMTP 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 M R ++ G H I F DD+ D+ S Sbjct: 122 ----------------MHDLRLDQTLSTPHGSFEYHFMNTGVEHVIVF-RDDVDQVDIKS 164 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ + H F +G N + A + + +RT+ERGV T ACG+ A +A+ Sbjct: 165 EGSSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAALKG 224 Query: 241 KTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 VS+ + GG L I + + ++ +TG AK + G ++ Sbjct: 225 MAKAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270 >gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] Length = 281 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 112/284 (39%), Gaps = 26/284 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F K+ G GN + ID R + ++S A D I A D Sbjct: 10 IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGS-ISVDM 120 N DGS + CGN RC+ + T T G++ + +V M Sbjct: 70 MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLISITVGDELQDATVTM 129 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +P ++ + V+ G PH + F D+L YD+ Sbjct: 130 TDPT----------------NILLNVSLEVEKETQQVHFVNTGVPHLVVF-HDNLIDYDI 172 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G LL H F EGVN++ ++ S S+ +RT+ERGV T ACG+ CASV+ + Sbjct: 173 IPKGKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIANQ 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 L V V +IE + +N V M G + G+L + Sbjct: 233 LGLVGTNVKVMTAS-KEIIELNLNNGKVLMKGPVVHVYTGQLQL 275 >gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] Length = 361 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 67/351 (19%) Query: 5 MVDFAKMEGIGNKILVID----MRGCHDNITS------DAINALSTDD--NTHFDQIMLI 52 V F+KM G GN + + R + + I+ + D DQ+++ Sbjct: 11 RVKFSKMHGAGNDFVCFETNKVERINSFDKSEISLKELKDISLILADRKYGVGCDQLIIC 70 Query: 53 HDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----------KRKSFT-- 98 ++ + S + +IN DG + CGNG+RC +F+ K+ T Sbjct: 71 NNNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKKDETTSE 130 Query: 99 ----FETIRGILV--------AKENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRD 142 ET+ G+++ + V+MG ++ WK +K D Sbjct: 131 IEQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLNNKQSID 190 Query: 143 RFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLY-------------HYDLASFG 184 + L L N +VSMGNPH I F++ ++ + Sbjct: 191 KSAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTMKIEDIA 250 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVVASGCLH 240 L KHP+F++ N+ ++ L R +ERG G T ACG+ A A VAS + Sbjct: 251 VALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAVASILMG 310 Query: 241 KTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 + V+ M GG LLI+W N +VF TG A + ++DI+ + I+ Sbjct: 311 HCDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIEINRQIE 361 >gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] Length = 258 Score = 238 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 121/285 (42%), Gaps = 39/285 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F+K +G GN ++ID R + T D +ML+ + A D Sbjct: 1 MTIPFSKYQGTGNDFVIIDNRTQYFPKDDTKLISKLCDRKFGIGADGLMLLENHPSA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + + + TFE I G+ A D + + M Sbjct: 59 FRMVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGLHEASIEGD-IVQLKM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + K+ ++ + + G+PH I V DD+ ++ Sbjct: 118 -------------QDVSKIKKEPTY------------TFLDTGSPHHIAMV-DDVEKVNV 151 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L ++ E G N++ + +RT+ERGV T +CG+ A +A+ Sbjct: 152 KAEGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHT 211 Query: 239 LHK-TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 T+ V++ + GG L +++ N ++++ G A ++G+ Sbjct: 212 NGLTTSNKVALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGE 256 >gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] Length = 270 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 33/285 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R +++ I AL T D ++LI A D + Sbjct: 3 IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIEASLSA--DFTM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC F + K + FE A + + M Sbjct: 61 KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKEQVKLQM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P ++ + + FL + G+PH + +V DD+ ++ Sbjct: 121 NPP--------------HDFKENLQVEGLLCYFL------NTGSPHVVTYV-DDVNIINV 159 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G+ + +F+ G N++ + TS L +RT+ERGV T ACG+ A AS + S Sbjct: 160 YEKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASALISHM 219 Query: 239 LHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 L KTN ++V + G L I + +++++G AK + G + Sbjct: 220 LGKTNSTSLNVTVRSGDTLQISFTSAMENIYLSGPAKIIFSGTFE 264 >gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] Length = 264 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 31/288 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M +S + F+KM G GN +V D ++++D I +L T D ++LI A Sbjct: 1 MNTS-IKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIEPS--AR 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118 D ++ N DG CGNG RC V F + + FE A + +I + Sbjct: 58 FDFAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFEANGNRYDAWVCDNEAIRL 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 M P RD F ++ F V+ G+PH I F D+L + Sbjct: 118 KMILP--------------HDFRDEFGSNGLSCNF------VNTGSPHTIIFT-DELDTF 156 Query: 179 DLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ S G L+ +F EG N++ +VTS ESL +RT+ERGV T ACG+ A A+ + S Sbjct: 157 DVESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMS 216 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 L K G L I++ ++ V+++G A + G + + Sbjct: 217 YKLGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSIQM 264 >gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245] gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245] Length = 272 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 33/291 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K+ G GN +VID R ++++ I A+ T D ++LI + D Sbjct: 1 MQIHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118 + N DG CGNG RC V F + + ++FE A ++ + Sbjct: 59 SMNYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRL 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYH 177 M LD + A + + N V+ G+PHA+ ++E L Sbjct: 119 HM----LDPEDFRNAVAVEGF----------------NCHYVNTGSPHAVIYIESRKLEA 158 Query: 178 YDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D++ G + + +F G N++ +T+ +S+ +RT+ERGV T ACG+ A A+ + Sbjct: 159 LDVSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALM 218 Query: 236 SGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 S L K + V VK+ G L + + ++ V +TG AK + G +++ Sbjct: 219 SFRLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQN 269 >gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 304 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 40/306 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 + + F K G N +++ ++ A+ + D ++ + Sbjct: 4 APRLAFLKGHGTENDFVIVPDPDGRLELSPAAVARICDRRAGVGGDGLIRVVRSSAHPEA 63 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L ++ T G+ Sbjct: 64 RGMADDAEWFMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIA 123 Query: 112 RD---------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 +D G+++V MG+ L + + H + V M Sbjct: 124 KDDLGGTDAPGGAVTVQMGKATL----------PEPGADGPVTVAVGEHSWPARH--VDM 171 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPHA+ FV DDL + + G N+ + +R ERG G T Sbjct: 172 GNPHAVAFV-DDLDQAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGET 230 Query: 223 AACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 +CG+ ACA +VA+ + A +V + GG L+I + V MTG A Sbjct: 231 RSCGTGACAVMVATARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVA 290 Query: 276 EGKLDI 281 EG+LD Sbjct: 291 EGELDP 296 >gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 295 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 111/296 (37%), Gaps = 40/296 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------A 58 F K G N +++ ++++ + AL D ++ + Sbjct: 15 FLKGHGTQNDFVIVPDPDGRIDLSAADVAALCDRRAGIGADGVLRVVRSAAEPAAAGMAG 74 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD--- 113 + F+ N DGS + CGNG+R R+L T G+ + D Sbjct: 75 QAEWFMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELAVATRGGVKRVRIAADAPD 134 Query: 114 ---GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G ++VDMG D + + L V+MGNPHA+ F Sbjct: 135 GTPGDVTVDMGRAAF-----------PGPDGVTVTVDGRSWPALN----VNMGNPHAVAF 179 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 VED + L A + +GVN+ + +R ERG G T +CG+ AC Sbjct: 180 VEDLAHAGHLYE-APATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGAC 238 Query: 231 ASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A VA+ + A +V + GG L+IE + + MTG A EG L Sbjct: 239 AVAVAAIRRDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294 >gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] Length = 281 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 30/288 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M++F K++G GN +VID R +++ A + + D ++++ + + Sbjct: 1 MLEFTKIQGNGNDFIVIDNREGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN-- 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC+ R+ ++ + +FET+ G + + +DM Sbjct: 59 FTMRLFNNDGSEGEMCGNGARCIARYAWEKKIAGEKMSFETLAGPIHGVVTAPF-VELDM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHY 178 GE L + F+ + +G PH + FV++ D H Sbjct: 118 GETNLS----------QGFWGQSLKVEGETFPFVY----LVVGVPHCVLFVDNLEDFSHD 163 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 L G + F +G N++ + + +L + T+ERGV LT +CG+ + AS +A+ Sbjct: 164 SLRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGSTASAIAA 223 Query: 237 GCLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279 + + + V+ GG + + +++ + ++TG+ EG+L Sbjct: 224 SIVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271 >gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101] gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101] Length = 260 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 38/288 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 V+F K +G GN ++ID R D ++L+ + D+ D Sbjct: 1 MQVEFYKYQGTGNDFVMIDNRSNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSETD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG++ CGNG RC+V F + TF G+ A D +S+ M Sbjct: 59 FRMVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I + ++ G+PH + V DDL HY++ Sbjct: 119 -------------------------IDVDEVQKNDSYTFLNTGSPHHVQIV-DDLEHYNV 152 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + ++ E G N++ + + LRT+ERGV T ACG+ A A +A Sbjct: 153 KENGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMNA 212 Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + +T++ +++ + GG L++ + +VF+TG AK ++G ++I Sbjct: 213 IGQTDKTSINLNVEGGKLVVSFDKLGDHFTNVFLTGPAKFVFKGIIEI 260 >gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 38/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + K +G GN ++ID R T+ D ++L+ + D S D Sbjct: 1 MKLYKYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLILLEN--DQSTDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F + + TF I G+ A N + IS+ M Sbjct: 59 MVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGLHHATINENDIISLQM-- 116 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++ H N ++ G+PH + F D+L ++D+ + Sbjct: 117 --------------KNVEEVNIHD---------NYVFLNTGSPHHVQF-ADNLSNFDVKN 152 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + ++ + G N++ TS +RT+ERGV T +CG+ A A+ +A Sbjct: 153 EGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETLSCGTGATATAIAMKATG 212 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 KTN +++ + GG L + ++ N ++F+ G A+ +E + Sbjct: 213 KTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFETTI 256 >gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] Length = 269 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 16/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 S ++F KM G+GN ++++ R N++ A N DQ ++ + + Sbjct: 3 SKINFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNNF--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T L+ + + ISV++G Sbjct: 60 YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P S DK+ + + L+ V +GNPH + F L D Sbjct: 120 AVSFNETWMP---SRDKI----WAFAARYMIDLKETICVDVGNPHLVIF--SKLESQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F+ GVN++ A + ++L WERGVGLT ACGS AC S A Sbjct: 171 IVGETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLKRGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V G L ++ +N ++ M G A EG Sbjct: 230 IHSPSTVVFKHGSLNMK-EENGNIIMQGSATLIAEGVY 266 >gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] Length = 259 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 39/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN +++D R ++ + I ++ D ++L+ + + D + Sbjct: 3 IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RCVVRF + F + G A + I + M Sbjct: 61 VYFNADGGEGSMCGNGGRCVVRFANDLGLFDGNTKFIAVDGEHEATVTGE-VIRLKM--- 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +++ D ++ G+PH + +V DD++ D+ + Sbjct: 117 ----SNVNGVEQYEEYD------------------FMNTGSPHYVTYV-DDIHEADVVNI 153 Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ + ++ G N++ V L +RT+ERGV T +CG+ A +++ Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281 V+V+ +GG L +E+ + +++ G A + +EG L++ Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259 >gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] Length = 299 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 122/291 (41%), Gaps = 31/291 (10%) Query: 10 KMEGIGNKILVI-DMRGC-HDNITSDAINALSTD-DNTHFDQIM-LIHDFQ----DASVD 61 K G N +++ D G H ++ + L D ++ +I + + + Sbjct: 17 KGHGTENDFVLLPDPDGSVHGDLDPALVRFLCDRYAGIGADGVLRVIEGSRQTYVEDGGE 76 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 F+ N DGS Q CGNG+R VR+L K T G+ N DG+I+ D Sbjct: 77 WFMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLNDDGTITAD 136 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +GEP L + H P H V MGNPHA+ FV+D Sbjct: 137 LGEPA-------LPGPAGIVVEADGHQWPATH--------VDMGNPHAVVFVDDLREPGP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + F GVN+ ++ +R ERG G T +CG+ CA VAS Sbjct: 182 L-VDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCAVTVASARA 240 Query: 240 HKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD---IKTGK 285 + R V+ V +LGG + + W +NHV +TG A G+ D + +G+ Sbjct: 241 ARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFDRAWLPSGR 291 >gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771] Length = 227 Score = 236 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 111/216 (51%), Positives = 146/216 (67%), Gaps = 5/216 (2%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 +CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW IPLA Sbjct: 1 ACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEE 60 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA FG LL HPMF E Sbjct: 61 FHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPE 120 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM----L 251 N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T R V + + Sbjct: 121 RANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKP 180 Query: 252 GGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 G L IEW + ++HV MTG A+ EW G+LD TG W Sbjct: 181 PGTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLW 216 >gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1] Length = 273 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQPLRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESGEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1] gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1] gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2] gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2] gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1] gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2] gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1] gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2] gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1] gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1] gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1] gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1] gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3] gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2] gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1] gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1] gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1] gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2] gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1] gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2] gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3] gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2] gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2] gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3] gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1] gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1] gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2] gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3] gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2] gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2] gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1] gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1] gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1] gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1] gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266] Length = 273 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESDEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 284 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 12/281 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + ++ + +K +G+GN L++D + + I L D ++ + Sbjct: 2 VMANTIIMSKYQGLGNDYLILDPKKNQVQLQGKKIALLCQRGFGLGADGVLY--GPVEID 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK--ENRDGS 115 +RI N DGSE GNG+R ++L + K F ET+ G + + +R Sbjct: 60 GKLGVRIFNADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATE 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++G+P IP++ ++ ++ F + +++GNPH I F D++ Sbjct: 120 FKVNIGKPSFISSDIPVSGEVREVIKENFVFHGKEYKAT----CLTVGNPHCIIFT-DNV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G + F E +NL I R +L++ WERG G T A G+ +CA+ A Sbjct: 175 SAEAVKNLGPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + L ++V GG + I+ ++ ++MTG + Sbjct: 235 AYKLGLVESRINVNQPGGMIQIDMEEDETIYMTGTVGYIAD 275 >gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1] Length = 273 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] Length = 260 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 37/287 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61 S + F K +G GN ++ID R + + L D D ++L+ + + D Sbjct: 2 SHIHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENH--PTAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG E CGNG RC+VRF + + TFE I G+ AK +IS+ M Sbjct: 60 FKMVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAKVIDATAISLQM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +M + ++ + G+PH + E+ L D+ Sbjct: 120 -------------SDVTEMRIENSYV------------YTNTGSPHHVQLTEN-LADLDV 153 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L + G N++ ++T E+ +RT+ERGV T +CG+ A +A Sbjct: 154 YQEGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIAMHKT 213 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + TN V ++ GG L + + + ++++ G A ++G I Sbjct: 214 NHTNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260 >gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] Length = 269 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 37/288 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALSTDD-NTHFDQIMLIHDFQ 56 + FAK++G GN ++I+ + +A+ + + D ++L+ D Sbjct: 1 MKLKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDST 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115 A D R N DGS + CGNGMRC RF+ ET+ G++ A Sbjct: 61 VA--DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGVVEAFVYGP-I 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V + +P R+ V+ L ++ G PHA+ FVE Sbjct: 118 VKVGLTKP-----------------RELALNLKVDGL---TVHFINTGVPHAVIFVER-A 156 Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 ++ G + HP+F G N++ V L+ + +RT+ERGV T ACG+ + AS Sbjct: 157 DAVNVKEIGRKVRFHPLFAPAGTNVNFVEVR-LDRIVVRTYERGVEDETLACGTGSVASA 215 Query: 234 VASGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 + + + K + V V++ G L + + + V++ G K ++G L Sbjct: 216 LIAAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDGLL 263 >gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism HF4000_APKG3D20] Length = 280 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 8/281 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN LV+D R +++ +I + D +L F D + Sbjct: 1 MNFDKYHALGNDYLVLDPRERFESLDERSIIRICDRNFGLGSDG-ILHGPFSSEKADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVDMG 121 RI+N DGSE + GNG+R R+L ++ + FT ET+ GI+ + + D I V+MG Sbjct: 60 RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +IP+ + + I + + ++GNPH + + D++ + Sbjct: 120 QVSFRSDVIPVKVEGEAREVLNEPIEAAGNSL--KYYAATIGNPHCVIPM-DEVSESFVR 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HPMF N+ + ++ +L + WERG G T A GS++ A+ + + Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + ++V M GG + + D +V M G A + LD + Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLDPE 277 >gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] Length = 259 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 123/284 (43%), Gaps = 38/284 (13%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN +V+D R + T I + D ++LI + D + Sbjct: 5 EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLCNRKFGVGSDGLILIENHD--EYDFEM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGNG RC V+F + + TF + G+ A D + + M + Sbjct: 63 IFFNPDGSQS-MCGNGSRCAVKFAQFLGIIKGETTFLSTDGVHEATIEGD-IVRLSMHD- 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + F ++ G+PH + F ++ + D+ Sbjct: 120 ----------------------VAQSEINTFPEHFTINTGSPHYVIF-ASNIKNKDVKEE 156 Query: 184 GNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + + F+ EG+N++ S + +RT+ERGV T +CG+ A +A+ Sbjct: 157 GASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIANVLHGG 216 Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 V ++ LGG L++E+ + +V++TG AK ++G++++ Sbjct: 217 V-SPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259 >gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] Length = 288 Score = 235 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 122/281 (43%), Gaps = 13/281 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F K G+GN LV R + ++++ I L D +++ ++ Sbjct: 2 TPLHFHKYHGLGNDYLVC-HRDVAEQLSNEHIQMLCHRHYGVGSDGLLI---DSGDQINP 57 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVD 119 +RIIN DGSE + GNG+R R+L R+ + F T G + + D ISVD Sbjct: 58 TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG + +P + + + + +VSMGNPH + V D L Sbjct: 118 MGRANFNPAALPALVNLPEAVNYPLPLADE----TLSVVLVSMGNPHCVVLV-DKLDLAQ 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + H +F + N+ V +L + WERG G T A GS++CA+ A L Sbjct: 173 VHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + V V M GG L I + + V M G K LD Sbjct: 233 GKVDDRVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 289 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 124/307 (40%), Gaps = 38/307 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N +++ ++ A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 REMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG ++V MG+ L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDVTVGMGKAFLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D + DL + + + +GVN+ + + +R ERG G T +CG+ ACA Sbjct: 166 DDLAHAGDLLA-PPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID---A 281 Query: 285 KWIKKNE 291 +W++ Sbjct: 282 EWLENAA 288 >gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] Length = 289 Score = 235 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 27/283 (9%) Query: 8 FAKMEGIGNKILVID--MRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ G GN +VI+ R + + I D ++ I Q+A D Sbjct: 13 FTKISGTGNDFIVINDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QNAPTDIQW 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG RC R++ S+ + SF T G++ + + I V + + Sbjct: 71 HFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRLIGVQLTK 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P R ++ I + +L ++ G PHA+ V D+ +DL + Sbjct: 131 P--------------HDHRSKYTIKTIKTEYLL--SSINTGVPHAVLQVS-DIESFDLMN 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH- 240 + H M++ G N++I + +++ +RT+ERGV G T +CG+ + A+ + + Sbjct: 174 MAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAIVACLDDS 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 + + V V GG L I + N V MTG+A + G + Sbjct: 234 EVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTITPD 276 >gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] Length = 289 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 124/307 (40%), Gaps = 38/307 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N +++ +++ A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENAIDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T T G+ + Sbjct: 62 RELAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVHID 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG ++V MG L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDVTVGMGGARLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D DL S + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 DDLAQAGDLLS-PPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + A+ +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID---A 281 Query: 285 KWIKKNE 291 KW++ Sbjct: 282 KWLETAA 288 >gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 289 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 121/306 (39%), Gaps = 38/306 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ ++ A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGLLHVVRSAAHPEA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 RHMAADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++G I+V MG +L + ++ V+MGNPHA+ FV Sbjct: 122 KEGDITVGMGGALLPEGDVTVSVGGRS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D + DL + + +GVN+ + LR ERG G T +CG+ ACA Sbjct: 166 DDLAHAGDLLG-PPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + V +V + GG L+I + + MTG A EG+++ Sbjct: 225 VAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE---A 281 Query: 285 KWIKKN 290 +W++ Sbjct: 282 EWLESA 287 >gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] Length = 278 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 32/298 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + F KM G GN ++ D R D++ A + + D ++L+ + Sbjct: 2 TGLQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVENSD--QC 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DGSE + CGN RCV RF +++ + TFET+ G++ A+ + ++ Sbjct: 60 DFKWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEVLGE-TVKAG 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + +P D F+ V+ N ++ G PH + V ++ D Sbjct: 119 LTDPT---------------DVKYFYALDVDG-TTCNVTSMNTGVPHVVLLV-GNIEKPD 161 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + H F G N++ L +RT+ERGV G T ACG+ A A+ +A Sbjct: 162 VEELGRKIRYHEAFAPAGTNVNFVEFR-RGELAVRTYERGVEGETLACGTGAVAAALARV 220 Query: 238 CLHKTNRAVSVKML-GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V V GG L + + ++F+ G+A + G++ K +K Sbjct: 221 AADAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQKK 278 >gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] Length = 327 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 25/296 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNT--HFDQIMLIHDFQDASV 60 ++ K G GN +ID N T + L+ D +T D I+ + + A Sbjct: 3 IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115 DA +R+ N DGSE CGNG+RCV R++ + K ET++ L K+ D + Sbjct: 61 DARMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ D K +PL D + ++ F +++ NPH + VE + Sbjct: 121 YLVEISPVSFDLKDLPLVLDKDTIINEKVSGISEELAFT----ALAVPNPHFVSIVEKEQ 176 Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + P F +GVN+S + + +RT+ERGVG T ACG+A AS Sbjct: 177 ITSDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSAST 236 Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEW--EGKLDIK 282 + + K V V GG + H+ N + + G A + E +++++ Sbjct: 237 LVTCMNGLNKIEEPVEVYNNGGKVRCVVHEKNGRQSIDLIGNASYVYRCEAEINME 292 >gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] Length = 324 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 26/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDF 55 M+ S++ K G GN ++ID D T + +LS D ++ I + Sbjct: 1 MKLSII---KCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNS 57 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-- 113 + DA +R+ N DG+E + CGNG+RCV R+ ++ +K ET++ L ++ D Sbjct: 58 EH--CDARMRMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTEDLY 115 Query: 114 ---GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + V + LD +PL N F +S+ NPH + Sbjct: 116 PDMKTYEVAIEPVSLDPVSLPLKTVHAPHIDRPIPALSDNLSFT----ALSVPNPHVVTK 171 Query: 171 VEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V +D+ H D S G L +F GVN+S + + + ++T+ERGVGLT ACG+A Sbjct: 172 V-NDVPHRDAESIGRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAM 230 Query: 230 CASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD 280 AS + S + ++V GG + H + V+ + G A E+ L+ Sbjct: 231 SASSLVSVLNAGNDLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLE 286 >gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] Length = 260 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 128/283 (45%), Gaps = 33/283 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K G+GN ++ D + + + D ++++ + + + ++ Sbjct: 1 MEFEKYSGLGNDFII----TEKDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI----LVAKENRDGSISV 118 N DGS CGNG+RC +L + K +T+ GI ++ E + +SV Sbjct: 54 FYNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSV 113 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DM I ++ ++ + +DR +I G H + FV+ + + Sbjct: 114 DMNAAINTTEI----KTIEAIDRTFKYI------------YTFTGTDHVVIFVDKEELNE 157 Query: 179 D-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D + +G + +F +G N++ V + E +D+ T+ERG GLT ACG+ A A S Sbjct: 158 DFVTKYGKNIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVS 217 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L KT V V +LGG L IE + +FM G ++ ++G + Sbjct: 218 NMLGKTGNKVKVNLLGGSLEIEI-KDGTIFMNGISEMIYKGSV 259 >gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 259 Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 101/261 (38%), Positives = 142/261 (54%), Gaps = 17/261 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN ++ID R I + N + DQI++I + ++ D F+ I N D Sbjct: 9 MYGTGNNFVIIDSRS----INNLNWNYREIANQNGCDQIIVITNS--SAADCFMHIYNAD 62 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129 G EV+ CGN RCV + S + T E + IL + SI V+MG+P+ W Sbjct: 63 GGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWHE 122 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D + P+ L++P V++GNPH +FFV D++ L S G L K Sbjct: 123 IPLSAKCDPLHL------PIELEMLKDPVAVNIGNPHMVFFV-DNISEIPLQSLGPKLEK 175 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248 H +F + VN++IA+V + LR WERG G+TA+CGSAACA+++AS R SV Sbjct: 176 HTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSV 235 Query: 249 KMLGGGLLIEWHDNNHVFMTG 269 + GG LLIEW DN +FMTG Sbjct: 236 NLPGGKLLIEWPDN--IFMTG 254 >gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] Length = 279 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 115/282 (40%), Gaps = 14/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 MV K G+GN L+ D + + I L D I+ + Sbjct: 1 MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGIL--SGPVLENEKIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK--ENRDGSISVD 119 +RI N DGSE + GNG+R ++L +K K + T G + + + + VD Sbjct: 59 VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG I M + N VSMGNP+ + +E ++ Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFF----CDNFYNITCVSMGNPNCVVMME-EISKNK 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G + F +N+ + V E++ + +ERG G T A G+ ACA+ A+ L Sbjct: 174 ALHLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHKL 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V M GG LL+E+ +++ VFMTG + G + + Sbjct: 234 GLVGNRVQVHMQGGDLLVEFAEDDRVFMTGPV--VYIGSITL 273 >gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2] gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2] Length = 276 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 34/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V+F KM G GN +VID R ++ ++ D ++ + D + D Sbjct: 4 VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSEK--YDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 R N DG EV+ CGNG RCV RF + + TFET+ G + A+ + + V + Sbjct: 62 GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISAEV-KGRMVKVLLP 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + L F G ++ F V+ G PH + V DL + + Sbjct: 121 APRNEATDVDL----------PFLAGWLSCDF------VNTGVPHVVVQVS-DLEKHPVF 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L H F EG N + + L +RT+ERGV G T ACG+ A AS + + Sbjct: 164 DQGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRR 223 Query: 240 HKTNRAVSVKMLGGGLLI--------EWHDNNHVFMTGEAKKEWEGKLD 280 + V+V GG LI + + +++ G + L+ Sbjct: 224 GSVSSPVTVHTQGGEELIIHLSSEGEDVRTGDRIWLQGNTSVIYTATLN 272 >gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] Length = 258 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 40/283 (14%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R N T D ++L+ + +D D Sbjct: 3 IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHEDQ--DFT 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ CGNG RC+V F + + S TFE I G+ A +DG + + M Sbjct: 61 MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAYI-KDGLVHLKM-- 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D I + + G+PH + +V +D+ HYD+ S Sbjct: 118 --QDVSEI---------------------KEYEDHLFLDTGSPHHVQWV-NDIEHYDVKS 153 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G L P++ G N++ T+ LRT+ERGV T +CG+ A A +A Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATTEG-FRLRTYERGVEDETLSCGTGATAVALAIHKQG 212 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 K + ++ +++ GG L IE+ ++F+ G A+K +EG Sbjct: 213 KVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEGV 255 >gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] Length = 276 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 24/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI------HDFQDAS 59 V F K G GN L+I + + A DD D I+ + H + Sbjct: 3 VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPR--- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + ++ DG+ CGNG RC + S +T G L A +G I+++ Sbjct: 60 --VIMTLVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRTDEG-ITIE 116 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P +P+ R+ +++ + V V+ G PHA+ F DD+ D Sbjct: 117 MGTPTFAPDEVPV-RADEQVFEEEIEGLEVTM--------VNTGVPHAVAF-VDDVDDVD 166 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 L + + F G N+++A D RT+ERGV G T +CG+ A A V + Sbjct: 167 LEAVAPRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAVAIAVVARR 226 Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L +T+ V V GG L + ++D + + G + E++G++ +++ Sbjct: 227 LGRTDADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272 >gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] Length = 263 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 37/285 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R N T D ++L+ D Sbjct: 3 LQFFKYQGTGNDFVMIDNRNNVVSKNDTKLINRLCDRKFGIGADGLILLEHPDVEGDDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F + F I G A ++D +++ M Sbjct: 63 MVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDKDNVVNLQMQN 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + N + G+PH I F E D+ + D+ Sbjct: 123 VS-------------------------DIYQSGNIAFLDTGSPHHIVFTE-DVKNLDVKE 156 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTS-LESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + + E G N++ T + +RT+ERGV T ACG+ A +A+ Sbjct: 157 EGAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGVTAVAIAAHHS 216 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 ++T V +++ GG L + + + V++ G A ++G++ Sbjct: 217 NRTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261 >gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018] Length = 333 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 24/308 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN ++ID + N+ + AI A + D I+ + Sbjct: 14 INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKSDI--C 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115 DA +RI N DGSE + CGNG+RCV R++ + ++S ET++ K D + Sbjct: 72 DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + +D+ LD K +PL +K+ D+ F VS+ NPH I V +++ Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDKIPELSDEFDFT----AVSITNPHLIAIV-NNI 186 Query: 176 YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L G + + +GVN+S +V ++ ++T+ERGVGLT +CG+A AS + Sbjct: 187 DSDKLVEIGKKGNSTKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASSI 246 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIK 288 S K + A++V GG + H +++ V G A +EG +++ K + Sbjct: 247 VSCIGEKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRKIEQ 306 Query: 289 KNEDDEAY 296 D+ + Sbjct: 307 FTIDESKF 314 >gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] Length = 356 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 130/344 (37%), Gaps = 68/344 (19%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIMLIHD 54 + F+KM G GN +V + + + FDQ ++I++ Sbjct: 13 IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72 Query: 55 FQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---------------MKRKSF 97 S + +IN DG + CGNG+RC +++ Sbjct: 73 NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132 Query: 98 TFETIRGI--------LVAKENRDGSISVDMGEPILDWKLIPLARSFD-----KMDRDRF 144 ET+ G+ + I V+M ++ F+ K ++ Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192 Query: 145 HIGPVNHLFLR-----NPFVVSMGNPHAIFFVEDDLYHYDLASFG--------------- 184 +I + L L +VSMGNPH + F+E ++ +L+S G Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252 Query: 185 -NLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 L K P+F +G N+ + + R +ERG G T ACG+ AC VAS + Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312 Query: 241 KT--NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ++ V+V M GG LLI+W + VF TG A + + + Sbjct: 313 YCTQDKEVTVSMPGGDLLIQWSSETGEVFKTGPACTVFNSNIKL 356 >gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 251 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 93/261 (35%), Positives = 135/261 (51%), Gaps = 17/261 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN ++ID R ++ ++ + DQ+++I A+ F+ I N D Sbjct: 1 MHGTGNSFVIIDSRSANN--LDWNYRQIADQGS--CDQVIIITMSNAAN--CFMHIYNAD 54 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129 GS + CGN RCV + + T E IL + D SI V+MG+P+L W Sbjct: 55 GSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWNE 114 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D + P+ L+ P V++GNPH +FFV D++ L + G L Sbjct: 115 IPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLGPKLEN 167 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248 H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS + SV Sbjct: 168 HELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCLATKQTSV 227 Query: 249 KMLGGGLLIEWHDNNHVFMTG 269 + GG LLIEW N + MTG Sbjct: 228 HLPGGHLLIEWSKN--ILMTG 246 >gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] Length = 317 Score = 233 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 13/277 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN LV ++++ I L D +++ +++ +RI Sbjct: 33 FHKYHGLGNDYLVCHH-SVAARLSNEQIRILCHPHYGIGSDGLLI---DSGDNINPTLRI 88 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123 IN DGSE + GNG+R R+L R+ F T G + + + D + VDMG Sbjct: 89 INPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVDMGRA 148 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + + +VSMGNPH + V L + Sbjct: 149 NFNPAALPALIDLPEALNYPLALAEE----TLSVSLVSMGNPHCVVPVTR-LDLAQVHRL 203 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + HP+F + N+ + V ++L + WERG G T A GS++CA+ L++ + Sbjct: 204 GPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVMRKLNRVD 263 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VSV+M GG L I + + HV M G K LD Sbjct: 264 DNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300 >gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15] gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15] Length = 266 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L + D ++ + + + N Sbjct: 5 KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ RM + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I A+S+ + IG + +G H + FVE+ G Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEI-WKKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] Length = 262 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 30/283 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRG------CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 ++ F KM GN +++D + +S A D ++L+ + Sbjct: 1 MLIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLLMP--N 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 S DA + I N DGS + CG+ +RCV L + +K F +T G+ N D +I+ Sbjct: 59 ESCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V++G P + + + +V +GN H I +V + L Sbjct: 119 VNLGMPSM--------------------LKSAYQVMDFTGDLVEIGNQHFIVWV-NSLKD 157 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G+ + H F++ VN+ A + + ++ ++ WE+G G T ACG+ A A+V + Sbjct: 158 DPHLQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFSGI 217 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V M GG + I N ++ ++GE + ++G + Sbjct: 218 AKGLLNNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYN 259 >gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] Length = 257 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 39/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K +G GN ++ID R A D ++L+ + D D Sbjct: 1 MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGADGLILLQN--DPEYDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+VRF F + G +A + D SIS+ M + Sbjct: 59 MVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMVS-DESISLKMTD 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 DR + ++ G+PH + FV DDL +D+ + Sbjct: 118 V--------------TGIEDR-----------QGLTFLNTGSPHVVRFV-DDLESFDVVA 151 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + F G N++ A+V ++ +RT+ERGV T +CG+ A + + Sbjct: 152 EGRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTGVTAVALVAHQQL 211 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 V ++ LGG L + ++ + +++ G AK+ + G + + Sbjct: 212 GMPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257 >gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] Length = 284 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 77/286 (26%), Positives = 117/286 (40%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN + +D R + D + A+ D ++ + S A Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70 Query: 63 FI-RIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG-SISVD 119 +I N DGS + CGNG RC R S F T G + A + D ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + +P K + + + + + H L F V+ G PHA+ VE DL + Sbjct: 131 LTDP----KDLRMDLTVE-----------IEHQELPLHF-VNTGVPHAVAVVE-DLEAVE 173 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + H F G N++ V L LRT+ERGV T ACG+ A AS V + Sbjct: 174 VWKLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVAR 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T + GG L + ++ G A+ + G ++ Sbjct: 234 KLGLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAFFPQS 279 >gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] Length = 353 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 47/296 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ F K +G GN ++ID R T D ++L+ D D D Sbjct: 87 RVIHFYKYQGTGNDFILIDNRLNTFPKEDTKLVAQLCERRFGVGGDGLILLED--DPEHD 144 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG+ CGNG RC+V F ++++ TF G+ A ++ I + Sbjct: 145 FSMIYYNSDGNPSSMCGNGGRCIVAFAQKLGVIQKEETTFSAPDGLHKA-LFKNNLIHLQ 203 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M +D HI V + ++ G+PH + V++ L D Sbjct: 204 M--------------------QDVSHIEKV-----KKGLFLNTGSPHYVEVVKN-LDSMD 237 Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + F+ EGVN++ +RT+ERGV T +CG+ A A+ +A Sbjct: 238 VKKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGATATAIAMY 297 Query: 238 CLHKTNRA-VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKKEWEGKLDI 281 KT + ++ GG L + + + +V++ GEA +EG + + Sbjct: 298 KGGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEANFVFEGTITV 353 >gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] Length = 289 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 38/306 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N +++ ++ + A+ AL D ++ + Sbjct: 2 STRIAFLKGHGTQNDFVIVPDPENALDLPAAAVAALCDRRAGIGGDGLLHVVRSAAHPEA 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L ++ T G+ A + Sbjct: 62 REMAAEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAHLD 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG ++V MG L + ++ V MGNPHA+ FV Sbjct: 122 KDGDVTVGMGRARLPEGEVTVSVDGR----------------TWPARNVDMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D + +L + +A + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 DDLAHAGELLA-PPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + V +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVAAARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEIDE--- 281 Query: 285 KWIKKN 290 +W++ Sbjct: 282 EWLRAA 287 >gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] Length = 266 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L + D ++ + + + N Sbjct: 5 KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ RM + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I A+S+ + IG + +G H + FVE+ G Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENSREEV-WKKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] Length = 285 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 10/270 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G+ N +V D +T + + D N ++ +++ N D Sbjct: 8 YHGLSNDYVVFDPNKNELELTPGNVKMIC-DRNAGLGADGVLEGPVIKEDGMHVKVWNPD 66 Query: 71 GSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPILD 126 GSE ++ GNG+R ++L +++K+F T G N DGS + V MG+ Sbjct: 67 GSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVSMGKISFW 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 127 SDEIPVTGEKREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISKNIVCKIGDY 181 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 F +N I +V E++ + +ERG G T A G+ ACA+ + L TN V Sbjct: 182 SECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKLGMTNNKV 241 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V M GG L +E D+ VFMTG+ + Sbjct: 242 IVHMPGGDLQVEVEDDGTVFMTGDVFYVAK 271 >gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] Length = 284 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 24/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQD 57 + S+M F KM+G GN ++ D + ++ A D ++ + + + Sbjct: 4 LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116 D N DGS + CGNG RC R + F T G + A+ G + Sbjct: 64 QGHDFDWHFFNADGSRAEMCGNGSRCAARLAHRLGLAGREQVFGTDAGAVRAQVKDKGKV 123 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + + I N V+ G PHA+ DD++ Sbjct: 124 RVQLTP---------------AENLQLHSILNFEESSPVNLHSVNTGVPHAVIIC-DDVH 167 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 +++ G ++ HP F G N++ +V + LRT+ERGV T ACG+ A ASVV Sbjct: 168 KVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASVV 227 Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + L +V V G L I+ + VF+TG+A ++G L + T Sbjct: 228 VASALGLCANSVQVVTSGKEHLNIDLQEQG-VFLTGKADFIYQGMLFLDT 276 >gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] Length = 288 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 112/286 (39%), Gaps = 21/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVD 61 V F KM+G GN + +D R + + + D ++ + H + A + Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGADGMIFLDHAPEGAGLA 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRD-GSISVD 119 N DGS + CGNG RC R + S F T G + A + D ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPIEAAVDPDSNLVTVR 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P I + + V+ G PHA+ FV D+L D Sbjct: 131 LTSPKDLRLNIDMEMEVEGRHHQ------------MTLHSVNTGVPHAVAFV-DNLETVD 177 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + H F G N++ VT L LRT+ERGV T ACG+ A AS V + Sbjct: 178 VWQLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAVIAK 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T ++ GG L + ++ G A+ + G ++ Sbjct: 238 ELGLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRGGFYPQS 283 >gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] Length = 266 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L + D ++ + + + N Sbjct: 5 KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ RM + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I A+S+ + IG + +G H + FVE+ G Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEV-WKKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980] gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980] Length = 266 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D + S +L + D ++ + + + N Sbjct: 5 KYNGCGNDFILLDYTEDTNY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ RM + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I A+S+ + IG + +G H + FVE+ G Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEV-WKKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] Length = 259 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 39/283 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN + ID R N T + D ++L+ + DA+ D + Sbjct: 5 FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLEN--DATADFKMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+E CGNG RC+V F + TF I GI A N DG + + M Sbjct: 63 YFNADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATIN-DGFVKLKM---- 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D D + ++ ++ G+PH + V +++ +D+ + G Sbjct: 118 --------------QDVDTIKVN-------KDHTFLNTGSPHHVALV-NNIKQFDVKTEG 155 Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + ++ + G N++ + +RT+ERGV T +CG+ A +A L K Sbjct: 156 AAIRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKA 215 Query: 243 N-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 N + VS+ + GG L + + ++++ G A ++G+++ Sbjct: 216 NTQEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258 >gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] Length = 261 Score = 231 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 39/289 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 S + F K +G GN +++D R N +T + ++ L D +ML++ + D Sbjct: 2 SAIHFYKYQGTGNDFVIMDNRNGEYNFLTEEQVHFLCDRRFGIGADGLMLLN--KQEGYD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDM 120 ++ N DG E CGNG RC+V F +F + G A D +++ M Sbjct: 60 FGMKYYNADGRESSMCGNGGRCLVAFARKMGLTDEKLSFLAVDGPHEATLKGDDWVNLKM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 D I + ++ G+PH + FV D+ D+ Sbjct: 120 ------------------QDVSGVEINSL-------HSYLNTGSPHYVKFVA-DVKAVDV 153 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + + F EG N++ + + +RT+ERGV T +CG+ A+ + + Sbjct: 154 YNEGKQIRYNDRFAKEGTNVNFVQSLDKG-IFVRTYERGVEDETYSCGTGVTAAALMTAG 212 Query: 239 LHKTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIK 282 V V+ LGG L + + N++++ G A +EG + + Sbjct: 213 AETKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITLP 261 >gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 288 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 121/281 (43%), Gaps = 13/281 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F K G+GN LV R + ++++ + L D +++ ++ Sbjct: 2 TPLHFHKYHGLGNDYLVC-HRDVAEQLSNEHVQMLCHRHYGVGSDGLLI---DSGDQINP 57 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVD 119 +RIIN DGSE + GNG+R R+L R+ + F T G + + D ISVD Sbjct: 58 TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG + +P + + + + +VSMGNPH + V D L Sbjct: 118 MGRANFNPAALPALVNLPEAVNYPLPLADE----TLSVVLVSMGNPHCVVLV-DKLDLAQ 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + H +F + N+ V +L + WERG G T A GS++CA+ A L Sbjct: 173 VHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V M GG L I + + V M G K LD Sbjct: 233 GMVDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 231 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 127/287 (44%), Gaps = 37/287 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 + F+K++G GN ++ID R A+ + D ++LI + + A Sbjct: 3 LRFSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117 D + N DGS + CGNG RCV RF + + + FET+ GI+ A+ N ++ Sbjct: 63 --DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVN-VSTVK 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + +P + L + + + + ++ G PH + FV D + Sbjct: 120 VKLTKP----HDLKLNLNVEGV----------------SGHFINTGVPHFVVFV-DRIED 158 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++ G + +F G N++ L+ + +RT+ERGV T ACG+ + AS + Sbjct: 159 VNVREVGRKIRFSELFQPSGTNVNFVEAQ-LDKIFVRTYERGVEDETLACGTGSVASALI 217 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 SG + K N + V L + + N N VF+ G ++G L+ Sbjct: 218 SGKVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264 >gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS] gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS] Length = 257 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 32/280 (11%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID R N+T + + A+ T D ++L+ + D + N Sbjct: 1 MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLE--TSETADFRMNYHNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG CGNG RC V F R K + FE A+ + S+ + M P Sbjct: 59 DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-- 116 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 RD G N V G+PHAI +V ++L D+ + G Sbjct: 117 ------------DFRDGLQAGA------WNCHFVDTGSPHAIAYV-NNLDQLDVLTEGGN 157 Query: 187 LAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 + + +F +G N++ +T+ ++L +RT+ERGV T ACG+ A+ + S L K Sbjct: 158 IRHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTS 217 Query: 245 A-VSVKMLGGG-LLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V VK+ G L++ +++ + +++ G A+ + G + + Sbjct: 218 SLVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257 >gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] Length = 261 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 37/287 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDD-NTHFDQIMLIHDFQDASVD 61 V+F K +G GN ++ID R + + I L D ++ + + D Sbjct: 1 MTVEFYKYQGTGNDFVIIDNRRYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGED 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + K F I G A +G +S+ M Sbjct: 61 FKMVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAIDGQHEASIT-NGVVSLKM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + N L N ++ G+PH + D+ + ++ Sbjct: 120 QDVS-------------------------NIETLENALYLNTGSPHYVTLTS-DILNKNI 153 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + + F EG N++ + +RT+ERGV T +CG+ A +A Sbjct: 154 KVDGAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHA 213 Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 L KT+ +V + + GG L + ++ NN +V++TG A++ ++G++ Sbjct: 214 LSKTDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEVS 260 >gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1] gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2] gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3] gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4] gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2] gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1] Length = 273 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 109/293 (37%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ K + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ D +TG A GK+D+ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1] Length = 273 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ K + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ +D +TG A GK+D+ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273 >gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14] gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14] Length = 289 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 38/308 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 SS + F K G N +++ +++ A+ AL D ++ + Sbjct: 2 SSRIAFLKGHGTENDFVILPDPDNALDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG R R+L T G+ Sbjct: 62 RAMAAEAEWFMDYRNGDGSVAEMCGNGTRVFARYLQHAGLAAEGDLAIATRGGVKKIHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG I+V MG+ L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDITVGMGKARLPEGDVAVSVGERS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D DL S + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 DDLADAGDLLS-PPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + MTG A EG++ Sbjct: 225 VAVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI---AA 281 Query: 285 KWIKKNED 292 W++ Sbjct: 282 DWLESVAG 289 >gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] Length = 270 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 31/286 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + FAK EG GN +++D+R S I L D +M + + D Sbjct: 1 MQMRFAKYEGAGNDFILLDLRNGGATPQSAEIARLCDRHFGIGADGLMTLAASAVSGCDC 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMG 121 +R N DGS + CGNG RC F F++ GI A+ R + + Sbjct: 61 SMRYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKRFDSTDGIHEARMLRIDGLRSTVE 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++D + I + + + G PH + F DDL D+ Sbjct: 121 LGMIDVERIDRGDGY---------------------WFLDTGVPHYVEFT-DDLEAVDVI 158 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + F++G N++ +V + +RT+ERGV T ACG+ + A+ + + Sbjct: 159 GRGRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTHLAA 218 Query: 241 KTNRAV-SVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLD 280 + + + + GG L I + + + ++GEA+K +EG D Sbjct: 219 QPSVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264 >gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1] gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1] gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1] gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2] gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4] gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1] gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3] gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1] gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1] gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1] gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1] gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2] gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1] gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1] gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2] gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3] gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2] gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1] gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2] Length = 273 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 108/293 (36%), Gaps = 33/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+L T RM T G+ + + G Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDGGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174 +SV MG ++ + + H + P V +GNPHA+ + Sbjct: 118 VSVTMGTVRVESGKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAA 220 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ D +TG A GK+D+ G Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54] gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila LSv54] Length = 297 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 35/296 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQD 57 M+ + F KM G GN + ID R A + + D I+ I Sbjct: 4 MEKGALSFTKMSGAGNDFIFIDNREGAVPPAIRAKLAAHICPRMFSVGADGIIFIEKSSI 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSI 116 A D N DGS + CGNG RC R+ SR + +F T+ GI+ A+ D ++ Sbjct: 64 A--DFSWDFYNADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVFADDTV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 + M P D +G + ++ G PHA+ +V++ Sbjct: 122 CLQMTAP------------EDYRSGLSLELGGTS----CQVDFLNTGVPHAVVYVDEVSE 165 Query: 174 --DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 + + + +G ++ H F G N++ SL +RT+ERGV T ACG+ A Sbjct: 166 GQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDETMACGTGA 225 Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF-----MTGEAKKEWEGKL 279 A+ + + V++ GG L I + ++G A+ ++G+L Sbjct: 226 VAAALCFSKKYGFASPVNIVSSGGEILSIAFKTGCPPQEAAPSLSGPARIIYQGEL 281 >gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922] gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922] Length = 260 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 126/285 (44%), Gaps = 38/285 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F K +G GN +++D R + I + D ++L+ + D +R Sbjct: 5 FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGADGLILLQNSN--PYDFRMRY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E CGNG RC+ +F ++ TFE I G+ A + Sbjct: 63 FNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRAVVH-------------- 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 P + + +D D+ + P + + ++ G+PH + FV D+ D+ G Sbjct: 109 -----PTYVALEMIDVDKVEVYP-------SHYFLNTGSPHHVQFVA-DVQKIDVQKEGA 155 Query: 186 LLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + P F +G N++ V ++L +RT+ERGV T ACG+ A+ +A+ K + Sbjct: 156 KIRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTAAAIAAYSAGKVS 215 Query: 244 R-AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + VK +GG L +++ V++ G A+ +EG + ++ Sbjct: 216 QLPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLEN 260 >gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum] Length = 285 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 16/284 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V+ + G +T + L + D I+L+ +R Sbjct: 4 DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLCDRNYGIGSDGILLLGQPTPP---FGLR 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGIL--VAKENRDGSIS---V 118 I N DGSE + GNG+R +FL K +F +T G + DG ++ V Sbjct: 60 IFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVKV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG + + + + M + + + VS+GNPH +FFVE + Sbjct: 120 DMGRYSFNPSDVGILGRSNPMIEEVLRLEDGTEI---RGSAVSVGNPHFVFFVE-KIDED 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ + +F + +N + RV +++R WERG G T A GS++CA+ + Sbjct: 176 FIHEKGRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERGAGYTLASGSSSCAAATIAVH 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L + V V M GG L+IE +N+ + M G ++ G L Sbjct: 236 LGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGHLSPD 279 >gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] Length = 262 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 38/289 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + F K +G GN ++ID R ++ I L D ++L+ + D Sbjct: 1 MQISFYKYQGTGNDFVMIDNRSEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + FE + G A + G +++ M Sbjct: 59 FKMVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + D +++ N ++ G+PH + V D+L D+ Sbjct: 119 -------------KDVDTVNQQE------------NYTFLNTGSPHHVQLV-DNLVELDI 152 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + ++ + G N++ + +RT+ERGV T +CG+ A +A Sbjct: 153 KTEGAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQ 212 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 KT N + + + GG L +++ + +VF+ G A +EGK+D+ Sbjct: 213 TGKTSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDLD 261 >gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 39/289 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN ++ID R + I L D ++L+ + D+ D + Sbjct: 3 LHFFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RC+V F TFE + G+ A + ++S+ M Sbjct: 63 IYFNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSA-IIKGETVSLKM--- 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +D + L+R ++ G+PH + FV DD+ +D+ + Sbjct: 119 -IDVPTVNLSRE---------------------ASFMNTGSPHHVAFV-DDVKDFDVFAQ 155 Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + P + G N++ +V + + +RT+ERGV T +CG+ A+ + S + Sbjct: 156 GRRIRNLPNYEAIGGTNVNFIQVIDGD-VHVRTYERGVEDETYSCGTGVTAAAITSKMAN 214 Query: 241 KTNR-AVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDIKT 283 K V V GG L +++ ++++ G A +EG + KT Sbjct: 215 KVEDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263 >gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] Length = 295 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 41/302 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ A Sbjct: 62 RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121 Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 +D G I+V+MG L + + LR V MGNP Sbjct: 122 KDEAPGVPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV D +L + + + GVN+ + +L +R ERG G T +C Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPHGVNVEFVVDRAPGALVMRVHERGSGETRSC 224 Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA VA+ + +V + GG L I + V MTG A EG Sbjct: 225 GTGACAVAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284 Query: 279 LD 280 +D Sbjct: 285 ID 286 >gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG] gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF] Length = 295 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 115/302 (38%), Gaps = 41/302 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ A Sbjct: 62 RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121 Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 ++ G I+V+MG L + + LR V MGNP Sbjct: 122 KEEAPGAPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV D +L + + + GVN+ + +L +R ERG G T +C Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSC 224 Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA VA+ + +V + GG L I + V MTG A EG Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284 Query: 279 LD 280 +D Sbjct: 285 ID 286 >gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 282 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 +DF K +GN LV+ D + I + D ++ I F D + Sbjct: 1 MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVL-IGPFSSNVADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N D SE + GNG+R R L + +K K FT ET G++ A+ + +G + V+MG Sbjct: 60 RIFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ + ++ +NH++ V++GNPH + E Sbjct: 120 KVSFLSQDIPVWGEPREVLLENLNVMSLNHIY----SAVTIGNPHCVILAESPTE-IMAK 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 FG L+ HP F N+ +V + + WERG G T A GS++CA+ + L Sbjct: 175 EFGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + ++ V M GG + IE ++ V M+G G + Sbjct: 235 CDSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSIS 273 >gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78] gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78] Length = 295 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 115/302 (38%), Gaps = 41/302 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T G+ A Sbjct: 62 RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121 Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 ++ G I+V+MG L + + LR V MGNP Sbjct: 122 KEEAPGFPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV D +L + + + GVN+ + +L +R ERG G T +C Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSC 224 Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA VA+ + +V + GG L I + V MTG A EG Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284 Query: 279 LD 280 +D Sbjct: 285 ID 286 >gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] Length = 298 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 27/295 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + F K +GN +V++ ++ I + D I+ D Sbjct: 1 MRFYKYHALGNDYIVLNPADFPAWGAAPSTAQIRVVCHRNFGVGSDGILW-GPLPSEKSD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKS------FTFETIRGILVAKENRD 113 +RI N DGSE + GNG+R R+L R+++ S T ET G + ++ Sbjct: 60 CGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGGHVRSEIRDA 119 Query: 114 GS-ISVDMGEPILDWKLIPLARSF--------DKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 G I V+MG + IP+ + + ++ I F ++GN Sbjct: 120 GRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDREFTFC----AATIGN 175 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH + + ++ +G L HP F N+ ++ ++ + WERG G T A Sbjct: 176 PHCVLPLP-EVSAELAHKYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYTLA 234 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 GS++ A+ + L + +V+V M GG + IE D+ + MTG K EG + Sbjct: 235 SGSSSSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289 >gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] Length = 258 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 40/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V F K +G GN ++ID R I D ++L+ + + D Sbjct: 3 VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N +G E CGNG RC V+F + T F + G AK DG + + MG+ Sbjct: 61 MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHETHFIAVDGPHDAKV-EDGLVHLKMGD 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + G+PH + FV ++L +D+ + Sbjct: 120 VQ-------------------------TVENNLDHYFLDTGSPHYVQFV-NNLPQFDVFA 153 Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + F E G N++ + + +RT+ERGV T +CG+ A+ + SG L Sbjct: 154 EGKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQ 212 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 + N +++K LGG L I + ++++ G A+ +EG + + Sbjct: 213 QMNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258 >gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1] gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1] Length = 269 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 39/290 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 ++ ++ F K +G GN +++D R + I L D ++L+ + D Sbjct: 8 IEEMILSFYKYQGTGNDFVLVDNRHDIFPKNNTKLIRKLCDRKFGIGADGLILLEN--DE 65 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSIS 117 + D + N DG+E CGNG RC+V F + ++ TF I G A D ++ Sbjct: 66 TYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYASIEAD-VVN 124 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + M + + + D+ + G+PH + F ++++ Sbjct: 125 LQM-------QDVTTIENHDE------------------HVFLDTGSPHHVTF-KEEISQ 158 Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ G + P F EG N++ + S +RT+ERGV T +CG+ A +A Sbjct: 159 FDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVALA 218 Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 L +T+ V++++ GG L + + ++F+ G+A + ++G++ Sbjct: 219 MHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEIS 268 >gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] Length = 268 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 33/284 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+K+ G GN +++D R + + AI AL T D ++LI + AS + Sbjct: 5 IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETAS--FSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVDM 120 N DG CGNG RC V F S + F FE A + ++ + M Sbjct: 63 LYHNADGLPGTMCGNGGRCAVWFARSIGVQPDAGGCFRFEANGDPYQAWVSGPETVRLRM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP I L + + G+PHA+ E L D+ Sbjct: 123 REPRGIRDEIDLGGQY--------------------CAFIDTGSPHAVIRTEG-LDAVDV 161 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + +F G N++ VT+ +S+DLRT+ERGV T ACG+ A A+ + S Sbjct: 162 VGEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSRR 221 Query: 239 LHKTN-RAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 L T+ ++ V++ G L + + ++ V++TG A + G + Sbjct: 222 LGMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTGVV 265 >gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO] gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082] gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082] Length = 266 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L T + D ++ + + N Sbjct: 5 KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDIDGLIAVKIDP-----LEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ + M + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I +++ + I + +G H + FVE+ G Sbjct: 118 SPEKIKANQTYP-IKNQEIEINGEKVTIT----SLFLGTIHTVVFVENAREEV-WRKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] Length = 268 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 27/283 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVD 61 + F K G N L R +A I D ML+ DA + Sbjct: 1 MKIPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAE 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRD----GSI 116 I++ N DGS + GNG RC FL M T G+ + Sbjct: 61 GTIQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQF 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++MG + K L + ++ R+ ++ +GNP VE + Sbjct: 121 EMNMGRAEIAEKRFELQVTGER----------------RDVTLLWVGNPQCAVPVEH--F 162 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +D + G + +HP F N+S R ++D+R WERG G T + G+ + + + Sbjct: 163 DFDWRTLGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMA 222 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V+ G + + + + +F+TG A+ EG+ Sbjct: 223 VARGLASSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263 >gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] Length = 1364 Score = 228 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + V F KM GN+ + +D R S ++ + D ++++ + Sbjct: 1082 RKRPVRFVKMHCGGNEYIYVDAIRQSVAEPASLSVALCGRRRSVGGDGLVIVAPPR-GKA 1140 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDG--- 114 DA + + + DG+ + GN +R V ++L + +K+K + ET G+ + +RDG Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ +G P D +P+ + D + F +S+G+P + DD Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYS--CGGFDDQITCLSLGDPQCVILT-DD 1257 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 +L G L+ + +F EG N+S V +L +RTWER +G T +CG++ CA+ V Sbjct: 1258 CDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAAAV 1317 Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L + +SVK GG L++ +F+ G ++EG +++ Sbjct: 1318 VAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIEM 1364 >gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] Length = 277 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + KM+G GN +VID R H+ ++ A + D +M + DF + Sbjct: 1 MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A V Sbjct: 60 DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177 + P + +FD+ + + V+++ L +P G PHA+ + Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 H + V + +LGG L +E D + + G+A EG + Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 276 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 14/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +GN +VID + ++ I A+ D +L + S D + Sbjct: 1 MKFSKYHALGNDYIVIDPKNLSGELSETDIRAICNRHFGVGSDG-ILCGPNESDSCDFSL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-SISVDMG 121 +I N D SE + GNG+R R+L + + FT ET G++ + +DG ++SV MG Sbjct: 60 KIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + + ++ + + N F ++ ++GNPH + + DD+ Sbjct: 120 KVRFTHESNLESEPIPEIIKIK------NREFT--YYLANVGNPHCVILL-DDVTPSLAK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G+++ F N+ +V S+ + WERG G T A GS++ A+ L Sbjct: 171 EYGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAASVVHALGL 230 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V M GG + IE MTG +K EG++ Sbjct: 231 CKSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEIS 269 >gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 286 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 117/279 (41%), Gaps = 9/279 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G GN +V+D+R + D AL+ D I+ I + + Sbjct: 2 SPTLAFTKMHGCGNDFVVLDLRDAPAP-SPDLCRALADRHTGVGCDLILGIRPPRSTTAV 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 A I +G CGNG RCV +L + SF ++ G K D S+ Sbjct: 61 AAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSIG 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + IPL RD ++ + S GNPHA+ V DD+ Sbjct: 121 LTVPRFAPEEIPLTGF---AGRDGWYEAVLADGTSVRFAAASTGNPHAVLEV-DDVGGGS 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G + P VN+ A V + + + LR E G G T ACGS ACA+ Sbjct: 177 VARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIRA 236 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 + R V+V++ GG L + W + + + G A +EG Sbjct: 237 GRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275 >gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE] gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE] Length = 290 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 35/299 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ + + L D ++ + Sbjct: 1 MSTPQIAFLKGHGTENDFVIVPDPDNAIDLPASLVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L T G+ Sbjct: 61 EARAMAEQAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGLAAEGDLAVATRGGVKGVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +DG+++V MG L + + D V+MGNPHA+ Sbjct: 121 LAKDGAVTVSMGHARLPKDGVRVTVDGRTWDARN----------------VNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVED + DL S + ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVEDLAHAGDLRSVPP-FSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CA VA+ + +V + GG L+I + V MTG A EG +D Sbjct: 224 CAVAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVIDP 282 >gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 275 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 28/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ----DASV 60 ++F K G N +++ ++T++ + AL D ++ + + ++ Sbjct: 4 IEFLKGHGTQNDFVLLPDAAGRLDLTAERVAALCDRQRGIGADGVLRVVRAKAIGEESVG 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG R R+L + F T G + D S++V Sbjct: 64 EWFMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG + + + + V++GNPH + + D+ Sbjct: 124 QMGPAAITGTSVTVVAGQP-----------------FSGVAVNVGNPHLVSVTDTDIAGL 166 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + H F GVNL V +L +R ERGVG T ACG+ A+V AS Sbjct: 167 DLRDQPDF--DHDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASLH 224 Query: 239 L-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L K +V + GG + + +TG A+ G+LD Sbjct: 225 LAGKDTGESTVDIPGGRVSVTV-GRGESTLTGPAEIVARGELD 266 >gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 223 Score = 228 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 7/195 (3%) Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147 L ++ T G +V D + V+MGEP + +P F ++ +I Sbjct: 35 LKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVP----FRANKAEKTYIM 90 Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 + VVSMGNPH + V D++ + + G +L H F E N+ +V Sbjct: 91 RAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERFPERANIGFMQVVRR 148 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VF 266 E + LR +ERG G T ACGS ACA+V V V++ GG L I W H ++ Sbjct: 149 EHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLY 208 Query: 267 MTGEAKKEWEGKLDI 281 MTG A ++G + + Sbjct: 209 MTGPAAHIYDGFIHL 223 >gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331] Length = 290 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 116/299 (38%), Gaps = 35/299 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-- 57 M +S + F K G N +++ D D D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALDLPVPVVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L + T GI A Sbjct: 61 DARDMADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGFVADGDLAVATRGGIKRAH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++DG I+V MG +L + + D V+MGNPHA+ Sbjct: 121 IDKDGDITVSMGRAVLPGSGVTVTVDGRSWDARN----------------VNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVED + DL S + ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVEDLDHAGDLFSVPP-FSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CA VA+ + +V + GG L+I H + + MTG A EG +D Sbjct: 224 CAVAVAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDP 282 >gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] Length = 317 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 41/309 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF------ 55 + V F K G GN ++I + + + + L+ D ++ Sbjct: 18 APRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPEG 77 Query: 56 -----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI 105 + + F+ N DGS + CGNG+R V FL + ++ T T G+ Sbjct: 78 EALLAEHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGTRAGV 137 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 G ++DMG + + D M R P R VSMGNP Sbjct: 138 KAVTRLEHG-YAIDMGPWCYLDPELAEEAASDSMVRAHGLTDP------RPALSVSMGNP 190 Query: 166 HAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWER 217 H + + DL DL G P G N+ + +R ER Sbjct: 191 HTVVPLASFADLQGLDL---GRAPEVDPAPPHGTNVEFVAAHEPLVREGVGRVRMRVHER 247 Query: 218 GVGLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEA 271 GVG T +CG+ ACA VA + + + V++ GG L ++ HV ++G A Sbjct: 248 GVGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEHVVLSGPA 307 Query: 272 KKEWEGKLD 280 + ++G+L Sbjct: 308 ELVFDGELT 316 >gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74] gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74] Length = 295 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 115/313 (36%), Gaps = 44/313 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55 S+ + F K G N ++I ++ D + L D ++ + Sbjct: 2 STAIGFLKGHGTQNDFVIIPDPENTLDLGPDTVAVLCDRRAGLGGDGLLHVVRSAAHPEG 61 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + T GI A Sbjct: 62 RAYADDAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGIKRAHLA 121 Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 D G I+V+MG L + + R V MGNP Sbjct: 122 NDEAPGVPGEITVEMGVARLPEGEVEVRV----------------GSGTRPATHVDMGNP 165 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV D +L + + +GVN+ + +L +R ERG G T +C Sbjct: 166 HAVTFVTDLAEAGELRE-APEVLPASAYPQGVNVEFVVERAPGALAMRVHERGSGETRSC 224 Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA VA+ + +V + GG L I + V MTG A EG Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGT 284 Query: 279 LDIKTGKWIKKNE 291 +D G W+ + Sbjct: 285 ID---GDWLAASA 294 >gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 277 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 27/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN +++D R ++ S + A + D ++LI + Q+ + Sbjct: 4 LHFWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEGDL- 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC R L F T G + A+ + + ++M Sbjct: 63 FRMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGE-RVRLEM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178 GE L+ FD+ DR FL +G PHA+ + + D+ Sbjct: 122 GEIDLEEAW------FDEPLEDRDLPPGTRWSFLH------VGVPHAVLWADSWQDVSEG 169 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 L G HP +G N++ A +L +RT+ERGV T +CG+ +CA V + Sbjct: 170 TLRWIGKKYRHHPRCPQGANVNFAAPE-EGALRVRTYERGVEDFTDSCGTGSCACGVVAV 228 Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNNHVF-MTGEAKKEWEGKLD 280 V V+ GG + + V + G A EG + Sbjct: 229 LRGG-PSPVEVRTPGGIQQVGCRIRGDKAVLSLAGAAVFVAEGVWE 273 >gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] Length = 285 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 119/286 (41%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61 V F KM+G GN + +D R + D + + D ++ H + + + Sbjct: 11 VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRD-GSISVD 119 N DGS + CGNG RC R + F T G + A+ + D ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P K + +A + ++ FH+ V+ G PHA+ V D L D Sbjct: 131 LTPP----KDLRMAIDIE-VEGRPFHL-----------HFVNTGVPHAVA-VMDHLELVD 173 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + +H F G N++ +L LRT+ERGV T ACG+ A AS + + Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T + GG +L + ++ G A+ ++G+ ++ Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEFYPQS 279 >gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] Length = 264 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 40/292 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F K +G GN ++ID R ++ + A D ++L+ + D D Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEN--DPQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F + T F I G A D + + M Sbjct: 59 RMVYYNSDGRESTMCGNGGRCVVAFAKRLGIIEHETLFIAIDGEHRATIEGDSYVRLQM- 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++ +++ + ++ ++ G+PH + +VE ++ D+ Sbjct: 118 ------------KNVTEVEEHKGYV------------FLNTGSPHHVQWVE-EVDTVDVK 152 Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 S G + +++ G N++ + +RT+ERGV T +CG+ A +A Sbjct: 153 SEGATIRYGELYATQGGSNVNFVS-KGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211 Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKTGK 285 + +T+ + +++ GG L + + +++++G A+ +EG ++ GK Sbjct: 212 IGETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFEGTIEELKGK 263 >gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] Length = 258 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 119/286 (41%), Gaps = 40/286 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62 M++F K +G GN ++ID R ++ + A D ++L+ + D+ D Sbjct: 1 MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLEN--DSQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG + CGNG RCVV F + + F I G A D + + M Sbjct: 59 RMVYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETLFIAIDGEHRATIEGDNYVHLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + P + ++ G+PH + +V DD+ D+ Sbjct: 119 NVT-SVEEHP------------------------DYVFLNTGSPHHVQWV-DDVETVDVK 152 Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G ++ ++++ G N++ +RT+ERGV T +CG+ A +A Sbjct: 153 PEGAVIRYGTLYADKGGSNVNFVS-KGENGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211 Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279 +T + +++ GG L + + + +++++G A+ +EG + Sbjct: 212 TKQTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEGVI 257 >gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074] Length = 296 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 120/311 (38%), Gaps = 46/311 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 S+ + F K G N +++ +++ + AL D ++ + Sbjct: 2 STRIAFLKGHGTENDFVIVPDPDNALDLSPRTVAALCDRRAGIGADGVLHVVRSAAHPEA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L T G+ A Sbjct: 62 RHLADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDLPIATRGGVKHAHLA 121 Query: 112 RD--------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 +D G ++V MG L + +A + V+MG Sbjct: 122 KDEPGAEPGTGPVTVAMGRAALPGGDVTVATAHGTAPA----------------LHVNMG 165 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ FV D +L S + + +GVN+ + +R ERG G T Sbjct: 166 NPHAVAFVADLADAGELLS-APAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETR 224 Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +CG+ ACA VA+ + AV +V + GG L+I + + V MTG A E Sbjct: 225 SCGTGACAVAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAE 284 Query: 277 GKLDIKTGKWI 287 G++D +W+ Sbjct: 285 GEID---AEWL 292 >gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] Length = 278 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 16/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64 + F K G GN ++++ C + + A D D ++ + + + + Sbjct: 3 LSFEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRVIM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 ++ DGS + CGNG RC + R +T+ G AK + DG +++MG P Sbjct: 63 TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIH-DGGATIEMGAPE 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+A ++ + + V+ G PHA+ FV DD+ +L Sbjct: 122 FGPNDVPVAGDEPLIE---------TRVGDYDVTAVNTGVPHAVAFV-DDVTAVNLERDA 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + +F EG N++ A D RT+ERGV G T +CG+ A A A+ L T+ Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230 Query: 244 RA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VSV GG L + D+ + +TG ++E+ G L + Sbjct: 231 GENVSVSPPGGDLEVTV-DDRNATLTGPVEREFGGDLRVSNA 271 >gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] Length = 264 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 40/292 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F K +G GN ++ID R ++ + A D ++L+ D D D Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLED--DPQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F + T F + G A D + + M Sbjct: 59 RMVYYNSDGRESTMCGNGGRCVVAFAKQLGIIEHETLFIAVDGEHRATIEGDSYVRLQM- 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++ +++ + ++ ++ G+PH + +VE ++ D+ Sbjct: 118 ------------KNVTEVEEHKGYV------------FLNTGSPHHVQWVE-EVDAVDVK 152 Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 S G + +++ G N++ + +RT+ERGV T +CG+ A +A Sbjct: 153 SEGATIRYGELYATQGGSNVNFVS-KGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211 Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKTGK 285 + +T+ + +++ GG L + + +++++G A+ ++G ++ GK Sbjct: 212 IGETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFDGTIEELKGK 263 >gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] Length = 266 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L T + D ++ + + N Sbjct: 5 KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ + M + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I +++ + I + +G H + FVE+ G Sbjct: 118 SPEKIKANQTYP-IKNQEIEINGEKVTIT----SLFLGTIHTVVFVENAREEV-WRKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039] gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039] Length = 266 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L T + D ++ + + N Sbjct: 5 KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ + M + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I +++ + I + +G H + FVE+ G Sbjct: 118 SPEKIKANQTYP-IKNQEIEING----DKVTITSLFLGTIHTVVFVENAREEV-WRKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 267 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 41/293 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVD 61 +DF K +G GN +++D R + D I+LI + D S D Sbjct: 1 MKMDFFKYQGTGNDFIILDNRKKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 +++ N DG E CGNG RC + F K F I G G IS+ Sbjct: 59 FYMKYYNSDGKESTMCGNGGRCAIAFSKKLGIPKENKIYFRAIDGDHCGIIQERGLISL- 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 K I + + K+ + ++ G+PH + FV +++ D Sbjct: 118 --------KFIDIEINMIKISKKYV--------------FLNTGSPHHVLFV-NNIKEID 154 Query: 180 LASFGNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 + G + H + GVN++ ++ +L +RT+ERGV T +CG+ ASV+A+ Sbjct: 155 VCKQGRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLAA 214 Query: 237 GCLHKT----NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 + + V + LGG L + + +++TG + +EG + I Sbjct: 215 YETGRISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEGWVHI 267 >gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM] gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD] Length = 253 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 38/283 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F K +G GN ++++ R + + + + I L D ++L+ + D D Sbjct: 1 MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPD--TDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + TF I G+ A+ N + + + M Sbjct: 59 MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKCTFNAIDGLHEAEVNGN-VVKLKM-- 115 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +D I S FV++ G+PH + FV ++ D+ Sbjct: 116 --IDVSNISRDAS---------------------DFVLNTGSPHYVRFVS-EVEKLDVYK 151 Query: 183 FGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + EG+N++ E+L +RT+ERGV T +CG+ AS + S Sbjct: 152 EGKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQD 210 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 K +V++K LGG L + + +V++ G A + ++G + Sbjct: 211 KDKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253 >gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] Length = 277 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + KM+G GN +VID R H+ ++ A + D +M + DF + Sbjct: 1 MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A V Sbjct: 60 DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177 + P + +FD+ + + V+++ L +P G PHA+ + Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 H + V + +LGG L +E D + + G+A EG + Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] Length = 277 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + KM+G GN +VID R H+ ++ A + D +M + DF + Sbjct: 1 MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D +R N DG+E + CGNG RC+ R+ + + + T ET+ G + A V Sbjct: 60 DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVI 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177 + P + +FD+ + + V+++ L +P G PHA+ + Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 LA + +F +G N++ L +RT+ERGV G T ACG+ + A+ Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225 Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 H + V + +LGG L +E D + + G+A EG + Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265] gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265] Length = 268 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 116/286 (40%), Gaps = 33/286 (11%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ + F+K+ G GN +VID R +++ I + D ++LI AS D Sbjct: 2 TAEIPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIEPS--ASAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSIS 117 ++ N DG CGNG R V F S + FE A ++ Sbjct: 60 FMMKYHNADGHPGSMCGNGGRAAVWFAHSIGIPFEQEGGCRFEAGGNPYRAWITASETVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + M EP I V G+PHAIF+ L Sbjct: 120 LQMLEPKGFRDNIKTGGGA--------------------CHFVDTGSPHAIFYTTG-LDG 158 Query: 178 YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 D+ G + +F G N++ VT+ +S+ LRT+ERGV T ACG+ A AS + Sbjct: 159 VDVVGRGGEVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALM 218 Query: 236 SGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGK 278 S L T + V++ G L + + + +F+TG A+ + G Sbjct: 219 SHRLGMTPSTTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRGT 264 >gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] Length = 334 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 149/321 (46%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57 M++ K+ G N ++D ++ + + D +++++ Sbjct: 1 MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 ++ +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L + +D + + Sbjct: 61 SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A FD + ++R + ++ F +++ NPH I FV Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + ++ L G L + +P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279 A+ +A + N +SV GG + I ++ N + + G A KL Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ G + I+K + AY Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317 >gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] Length = 266 Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G GN +++D D S +L T + D ++ + + N Sbjct: 5 KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125 DGS CGNG+RC R++ + M + F ET+ G SVDMG P Sbjct: 58 DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I +++ + I + +G H + FVE+ G Sbjct: 118 SPEKIKANQTYP-IKNQEIEING----DKVTITSLFLGTIHTVVFVENAREEV-WRKRGE 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] Length = 300 Score = 226 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 27/301 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F K G N +++ N+ +D + L+ D ++ + A+ DA Sbjct: 5 TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64 Query: 63 ----------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R +L F T GI + Sbjct: 65 VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124 Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 G +I+ +MG P D D + V MGNPH Sbjct: 125 EGSGDHATIATNMGAWRFT---DPAKAETDGFDSLVLLRERPLAEDPWSALSVDMGNPHT 181 Query: 168 IFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + + + DL DL P+ S G N+ RV + +R ERGVG T +C Sbjct: 182 VVALPESVDLATLDLFHVP---EVRPVPSNGTNVEFVRVVGAGHIAMRVHERGVGETRSC 238 Query: 226 GSAACASVVASGCLHKTNRAV---SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 G+ CA+ +A+ +V + GG L + N+ V + G A +G +D+ Sbjct: 239 GTGVCAAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVADGTVDLS 298 Query: 283 T 283 Sbjct: 299 A 299 >gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] Length = 270 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 79/269 (29%), Positives = 138/269 (51%), Gaps = 12/269 (4%) Query: 6 VDF--AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM+G+GN L+ID R +++ + I LS FDQ++ + + A DA Sbjct: 1 MKFKAFKMDGLGNDFLIIDNRNQKISLSPEQILKLSNRERGIGFDQLIYMENSTQA--DA 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I+ N DG +CGNG RC+ L + + TF+ + + +N D I+V M + Sbjct: 59 EIKYFNSDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIMPK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP+ + + + F I +N L+ ++++GNPH +FF + + +L Sbjct: 119 PKIKLSEIPVT---NDVQNNPFLI-EINSKKLK-GHLINVGNPHIVFF--EKISDEELKK 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ F + +N++ A + + +++D+ WERG G T ACG+AACA+ + L T Sbjct: 172 IGPIIENLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLKLT 231 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 V++ G LLI+ + + + MTG Sbjct: 232 KNPVNIHFQKGHLLIKINSDKTMMMTGPV 260 >gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2] gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1] gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3] gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08] Length = 274 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 104/294 (35%), Gaps = 33/294 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQ 56 F K G GN +++D HD +T + + L D + + D+ Sbjct: 1 MTTKFWKGHGTGNDFVIVD---RHDPLTPEQVRWLCHRRFGIGADGTLQALRARDVEDWN 57 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG 114 F+ N DG+ + CGNG+R R+L M T G+ + + DG Sbjct: 58 GDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDG 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVED 173 ISV MG ++ + + H V +GNPHA+ + Sbjct: 118 DISVTMGTVRIEPDDV-----------------TIEHQDTWWSACKVDVGNPHAVVVTDH 160 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 161 TTVSGINLDDSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVA 220 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 + +V + GG +++ D +TG A G++D+ G Sbjct: 221 ATMAARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274 >gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] Length = 1430 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 131/330 (39%), Gaps = 57/330 (17%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DFAKM+ GN +V + N ++ D ++LI + A DA Sbjct: 1105 RLDFAKMQSTGNDFIVFNAMEQEIINPEGLSVRLCDRRTGIGADSLVLI--TKSAVADAG 1162 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---------------SFTFETIRGILVA 108 +R N DGSE GN + CV ++L T ET G+ Sbjct: 1163 MRFFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRL 1222 Query: 109 ----KENRDGSISVDMGEPILDWKLIPLAR-------------------------SFDKM 139 + + S+ VDMG+P D IP S + + Sbjct: 1223 LAYTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENV 1282 Query: 140 DRDRFHIGPVNHLFL------RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 + V H L V+++G PH + F + D+ G L +P F Sbjct: 1283 ASGKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLF-SSFVDKIDVPGVGPLFENNPAF 1341 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKML 251 +N RV SL +R WERG G T ACG+ ACA+ VA+ + ++VK+ Sbjct: 1342 PRRINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVR 1401 Query: 252 GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 GG L++ + + V++TG A + G+++I Sbjct: 1402 GGDLIVNYT-GDTVYLTGGAALVYTGEIEI 1430 >gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] Length = 262 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 38/287 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 ++ F K G GN ++ID R + + ++ L D ++L+ +DA+ D Sbjct: 6 KHLMTFYKYHGTGNDFVMIDNRNLLFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAAD 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + TF I G+ A+ +G++ + M Sbjct: 64 FRMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEAEIT-NGTVKLKM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +D + I V++ G+PH + +V DL + D+ Sbjct: 123 ----IDVQSIEKDGE---------------------CSVLNTGSPHFVQWVA-DLGNLDV 156 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + GN + + +EG+N++ A S + +RT+ERGV T +CG+ A A+ + Sbjct: 157 RANGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAAALDFLK 216 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 V VK+LGG L I N +++ G A++ + G++++ Sbjct: 217 NG-NRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262 >gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 268 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 47/296 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 +++ F K +G GN ++ID R T D ++++ + D+ D Sbjct: 2 TVIHFYKYQGAGNDFIMIDNRMNTFPKEDTKLIARLCERRFGVGADGLIILEN--DSKTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG+ CGNG RC+V F + + TF G+ A D I + Sbjct: 60 FSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDGLHKAFFKND-LIHLQ 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M D I ++ ++ G+PH + V+ DL D Sbjct: 119 M----QDVSDI---------------------EKVKKGLFLNTGSPHYVEIVK-DLDSMD 152 Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + F+ EGVN++ + +RT+ERGV T +CG+ A A+ +A Sbjct: 153 VKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTGATATAIAMH 212 Query: 238 CLHKTNRA-VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKKEWEGKLDI 281 KT + ++ GG L + + + +V++ GEA+ +EG + I Sbjct: 213 KTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEFVFEGTISI 268 >gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] Length = 333 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + S+D D +++++ Sbjct: 1 MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L + + F +T+ L + D Sbjct: 61 SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMNANLRVSKQAD---- 116 Query: 118 VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P++ FD + R V L+ F +++ NPH I F+ Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282 A+ +A L + N+ + V GG + H ++ + + G A + +++I Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGGKVQTIVHYDHDCYWIELIGNAT--FTARIEIG 294 Query: 283 TGKWIKKNEDD 293 + N D+ Sbjct: 295 EDDLRQANFDN 305 >gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] Length = 290 Score = 225 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 119/307 (38%), Gaps = 38/307 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------H 53 S + F K G N +++ ++ + AL D ++ + Sbjct: 2 SMRIPFLKGHGTENDFVIVPDPENTLDLPPATVAALCDRRAGIGGDGLLHVVRSAAHPEA 61 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 62 KSMSAEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG I+V MG+ +L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDITVGMGKALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +D + DL + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 DDLTHAGDLYAPPPFSPPAAY-PDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID---A 281 Query: 285 KWIKKNE 291 W++ Sbjct: 282 GWLETAT 288 >gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237] gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237] Length = 258 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 38/287 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + F K +G GN +++D R D + I L D ++L+ + + +D Sbjct: 1 MKLTFYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLEN--EDGLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + S +F I G+ A ++G +S+ M Sbjct: 59 FKMVYFNSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + K P N + G+PH + V + L +++ Sbjct: 118 KNVS-EIKEKP------------------------NAVFLDTGSPHHVQLVAN-LKDFNV 151 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L +G N++ + +RT+ERGV T +CG+ A+ +A Sbjct: 152 KKEGARLRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIAMHKT 211 Query: 240 HKT-NRAVSVKMLGGGLLIEWH-DNN---HVFMTGEAKKEWEGKLDI 281 KT + +K LGG L I + ++ +VF+TG AK ++G++D+ Sbjct: 212 AKTAGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258 >gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] Length = 303 Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 116/305 (38%), Gaps = 42/305 (13%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57 Q+S + F K G N +++ + + + L D ++ + Sbjct: 8 QTSPLPFLKGHGTENDFVIVPDPDNALELPASTVARLCDRRAGIGGDGLLRVVRSAAHPE 67 Query: 58 -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110 + F+ N DGS + CGNG+R R+L + + T GI A Sbjct: 68 AEHMAGEAEWFMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHL 127 Query: 111 NRD-------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + G I+V MG +L + ++ V+MG Sbjct: 128 AKAVPGSGVAGDITVSMGRAVLPEDGVTVSVGGRS----------------WPARNVNMG 171 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ FVE+ + DL + ++ +GVN+ + +R ERG G T Sbjct: 172 NPHAVAFVEELDHAGDLLTVPP-FTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETR 230 Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +CG+ ACA VA+ + AV +V + GG L I + + MTG A E Sbjct: 231 SCGTGACAVAVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAE 290 Query: 277 GKLDI 281 G +D Sbjct: 291 GMIDP 295 >gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] Length = 234 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 31/241 (12%) Query: 2 QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KMEG+GN + ++ + +++ A+ D ++ I ++ Sbjct: 18 KGAGMRFTKMEGLGNDYIYLNCLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG-- 75 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114 D + + N DGS CGNG+RCV +++ ++ T +T G + + G Sbjct: 76 DFTMEMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVR 135 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMGEP L PL + + + V MGNPH + F + Sbjct: 136 EVTVDMGEPKLSP---PLEVQGETV------------------YPVDMGNPHGVIFCPEP 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL G L + P F N+ V + + L +R WERG G T ACG+ ACA + Sbjct: 175 -EEIDLEVRGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLA 233 Query: 235 A 235 A Sbjct: 234 A 234 >gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 270 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 34/291 (11%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +VID G + + + D ++++ ++ D + Sbjct: 1 MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 R+ N DGSE + CGNG RC+ R+ R +FETI GI+ A+ +++DMGE Sbjct: 59 RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKARVEGSF-VNLDMGEV 117 Query: 124 ILD----WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177 L + +P+A + D + +G PH + ++E D + Sbjct: 118 DLGKGWFGRKVPMAGGEVEAD------------------FLIVGVPHLVIYLEDPDKVDR 159 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 DL +G L + +F EG N++ SL + T+ERGV LT +CG+ +CAS V Sbjct: 160 EDLTRWGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAVV 219 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE--WHDN-NHVFMTGEAKKEWEGKLDIKT 283 + ++V GG ++ + ++ + + GE +G ++ + Sbjct: 220 AVRRLDLESPITVYNPGGVNIVTANFREDLCDIVLGGETVVVAKGTIEEEA 270 >gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49] gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49] Length = 257 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 38/283 (13%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN ++ID R + AL D D ++L+ + DA++D + Sbjct: 4 NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLEN--DATLDFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DG+E CGNG RC+V F + + TF+ I G A DG +S+ M Sbjct: 62 VYYNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG-VSLKM--- 117 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 I + L N ++ G+PH + VE+ L ++++ + Sbjct: 118 ----------------------IDVDDVNVLENYMFLNTGSPHHVQLVEN-LKNFEVFTQ 154 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 G + EG N++ S ++ +RT+ERGV T +CG+ A +A +K Sbjct: 155 GKEIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIALHKTNKL 214 Query: 243 -NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 V++ GG L +++ + +VF+ G A ++G + Sbjct: 215 KENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKGVWE 257 >gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1] gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1] Length = 331 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 29/293 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 V K G GN L+ID +T D A++ D D ++ + + Q A Sbjct: 3 VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFVSESQQA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DG--S 115 DA +R+ N DGSE CGNG+RCV R+++ + + ET++ L A++ DG + Sbjct: 61 DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARKAEPLLDGIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ D +P+ + + + + F V++ NPH I FVE++ Sbjct: 121 FRVEISPVSFDLNKLPMHIDKEVLINEPVKALSEDLSFT----AVAVPNPHLIAFVENEG 176 Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + D + P +F +GVN+S A+ L +RT+ERGVG T ACG+A AS Sbjct: 177 FRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNACGTAMSASS 236 Query: 234 VASGCLHKT--NRAVSVKMLGGGLL-----IEWHDNNHVF---MTGEAKKEWE 276 + + L + V GG + IE + + + G A +E Sbjct: 237 LVACLLRLRPFGEMIDVFNNGGKVRCFVQKIE-KEGEPAYTIDLIGNATYLYE 288 >gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] Length = 330 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 21/294 (7%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--------THFDQIMLIH 53 +S++V K G GN +++D N + A S D D ++ + Sbjct: 4 ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63 Query: 54 -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + Q + + +I DGS CGNG R + + ET G A + Sbjct: 64 INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATLSG 123 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D +I+++MG P+ + +PL D D + + V+ G PHA+ V Sbjct: 124 D-TITIEMGTPVFTPRCVPLTTDRDTALID-------EQIGSLSITAVNTGVPHAVGMV- 174 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 DD+ L + F GVN+++A +T RT+ERGV T +CG+ A A Sbjct: 175 DDIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234 Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + + T+ ++V+ GG L + + +TG ++E++ +L + T Sbjct: 235 IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288 >gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 304 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + F K G N ++I ++ + + L D ++ + Sbjct: 1 MPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 60 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113 + F+ N DGS + CGNG+R R+L T G+ ++ Sbjct: 61 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 120 Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G+I+V MG +L + + + + VS Sbjct: 121 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 164 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV DDL H ++ +GVN+ + +R ERG G Sbjct: 165 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 223 Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T +CG+ ACA VA+ + AV +V + GG L+I + V MTG A Sbjct: 224 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 283 Query: 275 WEGKL 279 EG + Sbjct: 284 AEGTI 288 >gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10] Length = 340 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 82/301 (27%), Positives = 148/301 (49%), Gaps = 26/301 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHD 54 + MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 4 KKIMVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVND 63 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 64 PVRENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDF 123 Query: 115 SISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168 + +V P ++ P+ A FD + DR G L+ F +++ NPH I Sbjct: 124 ASNV----PAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLI 179 Query: 169 FFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG Sbjct: 180 SFVNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACG 239 Query: 227 SAACASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL 279 + A+ +A + + ++V GG + I ++NN+ + + G A + + Sbjct: 240 TGMSATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNYWIELIGNATFTHQISI 299 Query: 280 D 280 D Sbjct: 300 D 300 >gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] Length = 355 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 154/327 (47%), Gaps = 39/327 (11%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHD 54 + MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 19 KKIMVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVND 78 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 79 PVRENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDF 138 Query: 115 SISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168 + +V P ++ P+ A FD + R L+ F +++ NPH I Sbjct: 139 ASNV----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLI 194 Query: 169 FFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG Sbjct: 195 SFVNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACG 254 Query: 227 SAACASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL 279 + A+ +A + + ++V GG + I ++N + + + G A + ++ Sbjct: 255 TGMSATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNAT--FTHQI 312 Query: 280 DIKTGKWIK----------KNEDDEAY 296 I ++++ + + AY Sbjct: 313 SIDE-EYLRNSNFATAQITETTEQNAY 338 >gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 268 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 42/291 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F K +G GN +++D R + L D I+LI + D+ D +++ Sbjct: 4 NFFKYQGTGNDFILLDDRTKKIVKEYTILKKLCNRHFGIGADGIILIQN--DSKSDFYMQ 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG-----ILVAKENRDGSISV 118 N DG E CGNG RC + F K F I G I+ ++N +S+ Sbjct: 62 YYNSDGKESTMCGNGGRCAIFFAKKLGINKENKIHFRAIDGHHYGLIIKNEKNDKCLVSI 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 ++ + ++ I P ++ G+PH I FVE+ + Sbjct: 122 NL----------------INIQKNEIEIHPE-------HVFLNTGSPHHIIFVEN-IKEI 157 Query: 179 DLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 ++ G + ++P +GVN++ + ++L +RT+ERGV T +CG+ ASV+A+ Sbjct: 158 NVYEEGKKIRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTASVIAA 217 Query: 237 GCLHKTN--RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281 ++ + + V +GG L + + + +++TG + ++G + I Sbjct: 218 YETNRISSIEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQGCIFI 268 >gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] Length = 334 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57 MV+ K+ G N ++D +T + + + + D T D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + + SF +T+ L ++++D + + Sbjct: 61 EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKDFAPN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A FD + DR + ++ F +++ NPH I F+ Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + L + G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279 A+ +A H + +SV GG + + + ++ + + + G A L Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGGMVKTVVHYEESQYWIELIGNATFTHHLSLDEA 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++TG + I + + AY Sbjct: 297 DLRTGTFEHVKITETNEQTAY 317 >gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] Length = 283 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 108/294 (36%), Gaps = 37/294 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN +V+D R +I ++ + D ++ + Q A + + N Sbjct: 9 KYHGLGNDFVVLDRRQTGVDIDAELSRWMCDRRRGIGADGVLSLLPSQQGL--ARMVVHN 66 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVA----KENRDGSISVDMGE 122 DGS + CGNG+RC V++L + ET G+L + + + MG Sbjct: 67 ADGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMGP 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L +P + F P+ VSMGNPH + Y+ Sbjct: 127 ARLVAPNLPSG-----VTGQPFVEAPIPEHLGLRGTAVSMGNPHLVLLGHP---LYEAER 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA----------ACGSAACAS 232 G +L HP F + N+ RV + L + WERG GLT + Sbjct: 179 LGPVLEHHPSFPDRTNVEFVRV-DPDGLTVVVWERGCGLTQACGTGACAAA--------A 229 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGK 285 + + V + GG L I + + + + G +EG + I + Sbjct: 230 AAVLARRLPADTWLRVTLPGGDLQIRVPSDLSEIRLRGPVAAVFEGVVTIPAAR 283 >gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118] Length = 334 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D + Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A F + DR V L+ F +++ NPH I FV Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIY 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] Length = 334 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D + Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A F + DR V L+ F +++ NPH I FV Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1] gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1] Length = 286 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + + K +GN +V+D R T D I + D I+ + Sbjct: 1 MRYHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDGILW-GPLPSKQSE 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISV 118 +RI N DGSE + GNG+R RFL + ++ +FT ET G + + +G I+V Sbjct: 60 FGLRIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKENGRLITV 119 Query: 119 DMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 MG D IP+ A + ++ ++ + + ++GNPH + + ++ Sbjct: 120 AMGRVSFDSAKIPVNLAGAAREVINEKLTVLDREFTYC----AATIGNPHCVIPLA-EIS 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +G + HP F N+ RV +++ L WERG G T A GS++ A+ + Sbjct: 175 PEIAHRYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAVA 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L +R V+V M GG + IE + + MTG K EG + Sbjct: 235 HRLGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277 >gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 277 Score = 223 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 36/289 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 M++F KM G GN ++ID R + A+ + D ++L+ + Sbjct: 1 MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVE--RSPRA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D R N DGSEV+ CGNG RCV RF + + + +FET+ G++ A+ D + + Sbjct: 59 DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAGLIDAELRGDD-VKLR 117 Query: 120 MGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + EP + IP+ +D ++ G PH + FVE +L Sbjct: 118 LTEPSSLQANQPIPVGDEILTVD------------------SLNTGVPHVVAFVE-ELGG 158 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ +G L F G N + VTSL SL +RT+ERGV T ACG+ + AS +A Sbjct: 159 FDVFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALA 218 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 + V V + G L I + + +V+M G + +EG+L Sbjct: 219 AAARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL 267 >gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] Length = 259 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 109/285 (38%), Gaps = 39/285 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F+K +G GN ++ID R + T D +ML+ A D Sbjct: 1 MTISFSKYQGTGNDFVIIDNRLDIFPKDDTKLVAQLCDRKFGIGADGLMLLESHPSA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + + TFE + G+ A +DG + + M Sbjct: 59 FRMVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATV-KDGIVHLKM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 D I + G+PH I V D+ + Sbjct: 118 ----QDVAEI---------------------KTTPEYSFLDTGSPHHIKMVS-DVKTVAV 151 Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + ++ E G N++ + +RT+ERGV T +CG+ A +A+ Sbjct: 152 KEEGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHN 211 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGK 278 T + + + GG L + + V++ G A ++G+ Sbjct: 212 NGVTSKNNIQLDVEGGKLAVSFTKTATGYTDVYLIGPATFVFKGE 256 >gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] Length = 286 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 32/285 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------LIHDFQD--A 58 F K G N +++ +T + AL D ++ + D D Sbjct: 15 FLKGHGTENDFVILPDPDGELKLTDSRVQALCDRRRGLGADGVLRVVRTAALEDAPDSVP 74 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R +L + T G+ DG + Sbjct: 75 GDVWFMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRV 134 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG L RS + ++ F V +GNPH E DL Sbjct: 135 TVDMGPAAL------FGRSRTAVGKENF-----------PGVAVDLGNPHLACVTEADLD 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL+S + +F +GVN+ + T + +R +ERGVG T +CG+ A+ VA+ Sbjct: 178 GLDLSSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAA 235 Query: 237 G-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T V + GG + +E + +TG A G+LD Sbjct: 236 LDADGATTGHRIVDVPGGTVEVEVTEQTS-TLTGPAVLVAAGRLD 279 >gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 V F K G N ++I ++ + + L D ++ + Sbjct: 15 VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 74 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113 + F+ N DGS + CGNG+R R+L T G+ ++ Sbjct: 75 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 134 Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G+I+V MG +L + + + + VS Sbjct: 135 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 178 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV DDL H ++ +GVN+ + +R ERG G Sbjct: 179 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 237 Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T +CG+ ACA VA+ + AV +V + GG L+I + V MTG A Sbjct: 238 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 297 Query: 275 WEGKL 279 EG + Sbjct: 298 AEGTI 302 >gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1] gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1] Length = 263 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 41/290 (14%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDAS 59 +S + F K +G GN ++ID R + + A+ D ++LI + +D Sbjct: 5 KSMEITFYKYQGTGNDFVMIDDRKENFDAGDLALVSKICDRKFGVGADGLILIRNHKD-- 62 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D + N DGS+ CGNG RC V F + F I G A DG + + Sbjct: 63 YDFEMIYFNADGSQS-MCGNGARCAVAFSAFLEIISDKTQFLAIDGPHEAIIQ-DGLVQL 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG D + I + V+ G+PH + V + Y Sbjct: 121 LMG----DVEKIEEKAE---------------------DYFVNTGSPHHVRMVS-KISDY 154 Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 + G + M+ G N++ S E + +RT+ERGV T +CG+ A + Sbjct: 155 PVFDEGKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACALVY 214 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 + + + LGG L + + +++ G A++ + GK+ I Sbjct: 215 AK-DQDKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263 >gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis] Length = 198 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 9/194 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF L ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V DD+ ++A Sbjct: 121 PDFEPQTVPFRAAKA---QKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174 Query: 183 FGNLLAKHPMFSEG 196 G +L H F G Sbjct: 175 LGPVLENHERFLSG 188 >gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] Length = 334 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 153/321 (47%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ A FD + DR L+ F +++ NPH I FV Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFSSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279 A+ +A + + ++V GG + I ++N + + + G A + + Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ + I + + AY Sbjct: 297 DLRNSNFATAQITETTEQNAY 317 >gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 321 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 V F K G N ++I ++ + + L D ++ + Sbjct: 18 VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 77 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113 + F+ N DGS + CGNG+R R+L T G+ ++ Sbjct: 78 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 137 Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G+I+V MG +L + + + + VS Sbjct: 138 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 181 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV DDL H ++ +GVN+ + +R ERG G Sbjct: 182 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T +CG+ ACA VA+ + AV +V + GG L+I + V MTG A Sbjct: 241 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 300 Query: 275 WEGKL 279 EG + Sbjct: 301 AEGTI 305 >gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] Length = 321 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 27/295 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN ++ID N T + AI D I+ + + Sbjct: 3 IEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQKSEK--C 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD------- 113 ++IIN DGSE + CGNG+RCV +FL ET++ + + ++ +D Sbjct: 61 VGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVFT 120 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I++D + +PL + + ++ +R +S+ NPH + FVE Sbjct: 121 DEITID--SIDFNVDSLPLVYEKENLFFEKLTAL----SDIREFTAISITNPHLVSFVE- 173 Query: 174 DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 ++ +L + G + +GVN++ + +S+ ++T+ERGVGLT +CG+ +S Sbjct: 174 EIEKEELKAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSS 233 Query: 233 VVASGCLHKTNRAV-SVKMLGGGLL--IEWHDNN--HVFMTGEAKKEWEGKLDIK 282 +A+ H N +V GG + + +++ V M G A ++ + I+ Sbjct: 234 SIATLLKHGINEKTYNVYNDGGMIQCKVTKNEDGIFRVMMRGNATFIYKSTISIE 288 >gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] Length = 327 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 123/290 (42%), Gaps = 27/290 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID T + AI D D I+ A Sbjct: 3 IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFTMKSDKA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115 DA +R+ N DGSE CGNG+RCV R++ K ET++ L ++ D + Sbjct: 61 DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ + +PL + + + ++ + + F +++ NPH I D Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEKINSLSDSLHFT----ALAVPNPHLIAVCSKDD 176 Query: 176 YHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL N+ + +F +GVN+S + ES+ +RT+ERGVG T ACG+A A Sbjct: 177 IQSDLQK--NISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSA 234 Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWE 276 S + S K R V V GG + E + + + G A + Sbjct: 235 STLVSCLQGMNKLERPVDVYNNGGKVQCIAHESNGGYTIDLIGNATYMYR 284 >gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] Length = 257 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 39/285 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R + T D +L+ + D +VD Sbjct: 1 MTFYKYQGTGNDFIIVDNRLQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+ F + + F I G+ AK D + + M Sbjct: 59 MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEAEFIAIDGLHKAKIKND-IVHLQM-- 115 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + ++FD + G+PH + V L +++ + Sbjct: 116 -----QDVSIVKAFDS------------------HLFLDTGSPHHVELVTG-LKDFEVKA 151 Query: 183 FGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ + P G N++ S + +RT+ERGV T +CG+ A +A Sbjct: 152 NGSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALAMHKSG 211 Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 KT V++ GG L I ++ + +++ G A K ++G+++ Sbjct: 212 KTKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256 >gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] Length = 334 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D + Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 V P ++ P+ A F + DR V L+ F +++ NPH I FV Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] Length = 276 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 122/282 (43%), Gaps = 24/282 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R + + A + D +M + D + + D Sbjct: 3 IVYTKMQGAGNDFIVIDNRRYNFSSKQLAKLAAQVCQRKFSIGADALMAV-DHPEGTGDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ ++ ++ ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYD 179 P + P A + V+++ L +P G PHA+ + Sbjct: 122 PPTVAKFDQPFA---------DREVPVVDYIELGDP-----GIPHAVVKYPGLQETSLDA 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA-SG 237 L + F +G N++ S L +RT+ERGV G T ACG+ + A+ A + Sbjct: 168 LTDLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVAR 227 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +T + + +LGG L +E + + + G+A EG++ Sbjct: 228 RREQTQANLVLHVLGGELRVEVA-SEELQLIGDAIFVSEGRI 268 >gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 221 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 146/321 (45%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D +++T + A + D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + + + Sbjct: 61 KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEENFAK- 119 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 G P ++ P+ A F + +R V ++ F +++ NPH I FV Sbjct: 120 ---GVPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINFV 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L + G L +P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQIAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKL--- 279 A+ +A H N + V GG + + H ++ + +TG A + Sbjct: 237 SATSLALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNATITHHIIISKS 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ + I + ++ +AY Sbjct: 297 DLRNNNFANVQISETKEQQAY 317 >gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] Length = 330 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-------THFDQIMLIHDFQD 57 MV K+ G NK ++D ++ + AL+ D +++I D Sbjct: 1 MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + F ET+ L D + + Sbjct: 61 PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHREADLADN 120 Query: 118 VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ FD + D V F +S+ NPH I FV Sbjct: 121 V----PTFSVEISPVTFAKETLPFDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ H L G +L +P F +GVN+S A++ +L +RT+ERGVG T ACG+ Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282 A+ +A H + +SV GG + H + F + G A + K++I Sbjct: 237 SATSLAFCLNHPEMADFDELISVYNPGGMVKTRVHSRDDTFSIDLIGNAT--FTHKIEIP 294 Query: 283 TGKWIKKNEDDE 294 + + Sbjct: 295 EADLHANDLEHA 306 >gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] Length = 272 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 29/285 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + F KM+G GN +VID + H + + + + D +M++ Q+ Sbjct: 1 MKIPFYKMQGAGNDFIVIDNQKLHLSNEQLVALTKKICQRRLSVGSDALMVVDVPQNTG- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG+E + CGNG RC+ R+ + ET+ G + A + + V Sbjct: 60 DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + EP ++ +P + V+++ L NP G PH + D L Sbjct: 120 LNEPTVEQFDLP------------YENISVDYIELGNP-----GLPHLVVRC-DALATEP 161 Query: 180 L---ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 L SF L +G N+++ V + LRT+ERGV G T ACG+ A A+ + Sbjct: 162 LASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYS 221 Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VS++ LGG L ++ + +F+ G+ EG + Sbjct: 222 LVKKGIVPSTTVSLQTLGGVLQVQVQKDQ-LFLIGDTNIVVEGSI 265 >gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32] gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463] Length = 334 Score = 221 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 150/308 (48%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L+ TD T D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D + + Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 V P ++ P+ A FD + R L+ F +++ NPH I FV Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282 A+ +A + + ++V GG + I ++N + + + G A + ++ I Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNAT--FTHQISID 294 Query: 283 TGKWIKKN 290 ++++ + Sbjct: 295 E-EYLRNS 301 >gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 282 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 12/266 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G GN LV D + + I + D I++ + ++RI Sbjct: 5 FEKYHGNGNDYLVFDTKKFEYELQGSQIREICDRHFGVGSDGILM--GPYEKEDGIYVRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISVDMGE 122 N DGSE + GNG+ +FL + T T+ G + +++G+++V MG+ Sbjct: 63 FNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNVAMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 IP+ ++ + + +++GNPH + + D+L ++ S Sbjct: 123 VSYMSDEIPVTGESREVIEEAMEFQGQKVITT----CLTIGNPHCVI-IRDELVKKEVKS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ F +N+ +V + E + + +ERG G T + GS++CA+ + L T Sbjct: 178 LGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYKLGLT 237 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT 268 +R V V M GG + +E ++ FMT Sbjct: 238 DRKVKVHMPGGTVEVEIEEDGMTFMT 263 >gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium] Length = 261 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 39/282 (13%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K + GN ++ID R N T D ++L+ D Sbjct: 3 INFYKYQATGNDFVIIDNRLKTFTKNNTKLIARLCDRRFGIGADGLILLELAD--GFDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+V + T F + G+ A +S+ M + Sbjct: 61 MIYYNADGKESSMCGNGGRCIVALAQRLGMIQGSTNFIAVDGLHKATIQG-SQVSLKMRD 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 K L FVV G+PH + + +L D+ Sbjct: 120 VFKTAK-------------------------LGGGFVVDTGSPHCVL-MRSNLSAVDVQF 153 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ L P F EG+N++ + S E +RT+ERGV T +CG+ A +A L Sbjct: 154 EGSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHALK 213 Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277 KTN+ + ++ GG L + + N +V+++G A +EG Sbjct: 214 KTNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255 >gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 26/285 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 S + F K GN LVI+ R S A + + D I + + A F Sbjct: 2 SGIGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLD--RRADGSFF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVD 119 +R+ N DGSE + GNG RCV +L + R+ T GI + + I Sbjct: 60 LRLFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESA 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---Y 176 MG P + + I I VN + +V++GNPH + F + + + Sbjct: 120 MGVPRVMPRAI--------------EIAGVNGVI--EGAMVNVGNPHYVIFPDSEDFSSH 163 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 G ++ P+F G N+ RV + + ++ R +ERG G T + G+ CAS A+ Sbjct: 164 GMSWQELGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAA 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 L R ++ GG + W D + + +TG A+ +G+++ Sbjct: 224 MTLRAVARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268 >gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] Length = 309 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 128/313 (40%), Gaps = 43/313 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------------------ 42 M + V F K G GN LV+D + + Sbjct: 1 MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60 Query: 43 NTHFDQIMLIH-DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET 101 D ++ + + + + ++ DGS CGNG R V + R + F +T Sbjct: 61 RRGADGVLFLSVEERFNPTRVVMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMIDT 120 Query: 102 IRGILVAKENRD-GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 G A N D + +++MGEP D +PLAR + PV L + V Sbjct: 121 QAGTRRASVNADATAATIEMGEPTFDPARVPLARD------EPLIDEPVEGLTV---TAV 171 Query: 161 SMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----- 209 + G PHA+ FV+ D + DL + + +F EG N+++A V S Sbjct: 172 NTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDGPA 231 Query: 210 -LDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNHVF 266 +D RT+ERGV G T +CG+ A A V A+ L + +V + GG L + D H Sbjct: 232 LIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGHAT 291 Query: 267 MTGEAKKEWEGKL 279 +TG +E+EG L Sbjct: 292 LTGPVAREYEGTL 304 >gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58] gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58] Length = 315 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 41/308 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD------ 57 V F K G GN +++ + ++ + + L+ D ++ + Sbjct: 18 RVPFTKGHGTGNDFVLLADPDGNVHLEAAQVAVLADRHRGIGGDGVIRAVPSRHVEEGRA 77 Query: 58 -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILV 107 + F+ N DGS + CGNG+R V FL + +S T T G+ Sbjct: 78 LLAAHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKT 137 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 G ++DMG + + D M P R VSMGNPH Sbjct: 138 VSRLAHG-YAIDMGPWSYLDPELAEEAASDAMVLAAGLADP------RPALSVSMGNPHT 190 Query: 168 IFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGV 219 + + +DL DL P S G N+ +R ERGV Sbjct: 191 VVPLASFEDLEGLDLT---RAPEVDPAPSHGTNVEFVAAHEPLVREGVGRARMRVHERGV 247 Query: 220 GLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKK 273 G T +CG+ ACA VA + + + V++ GG L +++ HV + G A+ Sbjct: 248 GETQSCGTGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAEL 307 Query: 274 EWEGKLDI 281 ++G+L + Sbjct: 308 VFDGELTV 315 >gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] Length = 335 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M K+ G N+ ++D ++ + AL D T D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET++ L + D Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDDF--- 117 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ A FD++ +R V F +++ NPH I FV Sbjct: 118 -FPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 172 EDDLYHYDL-ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D+ + G L ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H ++V GG + H ++ + + G A + ++++ Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294 Query: 283 TGKWIKKNEDDE 294 D Sbjct: 295 EAALHDAQVTDA 306 >gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262] gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262] Length = 329 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 24/301 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L +++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 A + L K ++V GG + + + + + G A G + + Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYER 297 Query: 284 G 284 G Sbjct: 298 G 298 >gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] Length = 301 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 27/287 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + ++F K+ G GN + +DM + A + D ++++ A Sbjct: 28 GTTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVEPS--AG 85 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118 +R+ N DGSE + CGNG RC+ RF R + TFET+ G++ A+ + + Sbjct: 86 AHFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARVEGSFA-EI 144 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GE I + D + +G PH + F ++L Sbjct: 145 DLGEQSFAPDWIDRPLTMDGA--------------AFRSCFLWVGVPHLVLFAPEELSRD 190 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D G +F +G N++ AR L T+ERGV LT +CG+ + A+ +++ Sbjct: 191 DCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAALSA 250 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 G L + + V GG + + + + G+ +G+L Sbjct: 251 GLLFGMDSPIEVHNPGGTNRVAFERLDGTRFRTVLGGDTAVVAKGEL 297 >gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 38/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +++D R I L D ++L+ + D + D + Sbjct: 1 MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLCDRRFGIGADGLILLEN--DPNYDFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RC+V F + F G A+ + +G I + M Sbjct: 59 VYYNSDGGESTMCGNGGRCLVAFAFFLDIFEDKCRFIATDGEHEAEIH-NGIIKLKM--- 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ V+H N FV++ G+PH + +VE+ L Y + Sbjct: 115 --------------------INVDAVSHD--GNDFVLNTGSPHYVKYVEN-LKDYPVYDE 151 Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + + E G+N++ S + +RT+ERGV T +CG+ AS + H Sbjct: 152 GYGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALTFLQKHN 211 Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +V VK LGG L + + ++++ G AK+ + GK D+ Sbjct: 212 L-TSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254 >gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152] gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152] Length = 256 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 77/285 (27%), Positives = 118/285 (41%), Gaps = 40/285 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R +D I+ + D I+LI +DA D Sbjct: 3 LPFLKYQGTGNDFVMIDNRTKIFPKKNTDKISEICDRHFGIGADGIILIE--EDADYDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGSE CGNG RC V F +M + TF + G A N D IS+ M Sbjct: 61 MIYYNADGSE-TFCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNNDF-ISLQM-- 116 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I N G H + V +DL Y + Sbjct: 117 -----------------------IDVSEFQVKENSIFTYTGTQHHVEMV-NDLEEYPVYE 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + G N++ A+ + + +RT+E+GV T ACG+ A +A K Sbjct: 153 NGRKIRNSYENP-GSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALAMHKTGK 211 Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 TN +S+ + GG L + + + N +VF+ G A ++G+++I Sbjct: 212 TNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256 >gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 278 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 10/261 (3%) Query: 15 GNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEV 74 GN LV D + + + L D N ++ +++I N DGSE Sbjct: 2 GNDYLVFDPNKNEMKLGEEQVKMLC-DRNFGIGSDGILEGPILDGEQMYVKIYNPDGSEA 60 Query: 75 QSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDG-SISVDMGEPILDWKLI 130 GNGM R+L +++ ++ T+ G + N +G + + MG+P I Sbjct: 61 PKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGTRVKISMGKPTFWSDEI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P+ +M G + ++ +S+GNPH + ++ +++ + G Sbjct: 121 PVTGERREMVNQTMVFGKIPYITT----CLSIGNPHCVIWM-NEISKELVCRIGEHSENA 175 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P F E VN + V ++ + +ERG G T A GS ACA+ A+ L +R + V M Sbjct: 176 PCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANRLGLADRNMYVHM 235 Query: 251 LGGGLLIEWHDNNHVFMTGEA 271 GG L +E ++ V+MTGE Sbjct: 236 PGGILEVEIKEDGVVYMTGEV 256 >gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e] gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561] gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e] gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] Length = 329 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 24/300 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D G SDA A L +++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 A + L K ++V GG + + + + + G A G + ++ Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYES 297 >gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S] Length = 329 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 24/300 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 A + L K ++V GG + + + + + G A G + ++ Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYES 297 >gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023] Length = 329 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 24/300 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L +++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + V++ + + +P+ +K+ F VS+ NPH I FV Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVIPELDSELAF----SAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D A+ + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDKQATLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 A + L K ++V GG + + + + + G A G + ++ Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYES 297 >gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 328 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 27/316 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 +++ F K+ G N ++D H SD A L ++ D I+ + Sbjct: 2 AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111 A +R++N DGS CGNG+R V R+L + ET++ IL ++ Sbjct: 62 KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVRKATSLGF 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + V++ + + +P+ +K+ F VS+ NPH I FV Sbjct: 122 DIPTYQVEISPVKFNPESLPMYVGVEKLFNQVIPELDEELAF----SAVSVPNPHLITFV 177 Query: 172 EDDLYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D +P F +GVN+S + + +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDKQEKLASFLNSENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL---D 280 A + L + ++V GG + + + + + G A G + D Sbjct: 238 SACSLIKKMLDQDTLETPLNVYNDGGRVQVTAKKDETGDISLQLIGNATFVSTGSVRYDD 297 Query: 281 IKTGKWIKKNEDDEAY 296 I T + + Y Sbjct: 298 IVTELTNEATVEQAQY 313 >gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] Length = 335 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M K+ G N+ ++D ++ + AL D T D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET++ L + D Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDDF--- 117 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ A FD++ +R V F +++ NPH I FV Sbjct: 118 -FPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 172 EDDLYHYDL-ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D+ + G L ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H ++V GG + H ++ + + G A + ++++ Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294 Query: 283 TGKWIKKNEDDE 294 D Sbjct: 295 EAALHDAQVTDA 306 >gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1] gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1] Length = 330 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 23/294 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID N + AI D I+ + D Sbjct: 3 INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLDSD--RC 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----RDGS 115 D +R+ N DGSE CGNG+RCV R++T + T ET++ L + Sbjct: 61 DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADLKISSEPSIFAEIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 V++ + + K +P+ + ++ F V++ NPH I VE++ Sbjct: 121 FKVEISPVLFELKHLPMNIDKQTLIDEKVPEISAALTFT----AVAVPNPHLISIVENEH 176 Query: 175 -LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L + + ++ + +F +GVN+S + + + +RT+ERGVG T ACG+A AS Sbjct: 177 ILSNEQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMSAST 236 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282 + + + + V GG + + H N+ F + G A KLD+ Sbjct: 237 LVTCLSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDLD 290 >gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] Length = 274 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 25/288 (8%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +V+ + +++ A + + D I+++ + + A I Sbjct: 5 LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVGAERSDA--ARI 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R N DGS + CGNG RC R+ R ++ F T G L DG V M E Sbjct: 63 RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD--L 180 P +++ D + + +G PHA+ FV D H D L Sbjct: 123 P-------------EQVRFDAMTVEAGEEQ--WPLHALWVGVPHAVVFVPDVERHSDEHL 167 Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L F G N++ V + RT+ERGV LT ACG+ A A+ Sbjct: 168 TALGRALRYDDKHFPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFVVHT 227 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 L V + + GG L ++ + +++ G+A+ G L + W Sbjct: 228 LLDRPWPVDLVVDGGRLTVD-QRDGRLWLIGDARIIARGTLSPEALAW 274 >gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] Length = 261 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 39/289 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVD 61 + F K +G GN ++ID R + I A D +L+ + D Sbjct: 1 MKIPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V+F + + F + G+ A ++ +++ M Sbjct: 59 FEMVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAFI-KEKLVNLQM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 ++ ++ L + F ++ G+PH + VE + + + Sbjct: 118 -----------------------MNVAGIDTLA-DDTFFLNTGSPHYVKKVE-KIEQFPV 152 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + F G N++ + L +RT+ERGV T +CG+ A+ +A+ Sbjct: 153 FETGKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEK 211 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282 L + V +K LGG L + + VF+ G AK+ + G++++ Sbjct: 212 LGIAPQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEVD 260 >gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205] gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205] Length = 278 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 109/295 (36%), Gaps = 40/295 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58 ++F K G GN +++ +T + AL D ++ ++ A Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLELTPGLVAALCDRRRGIGGDGVLRVVRAAHHADGVAL 60 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG R VR+L T G++ A+ Sbjct: 61 ADEAEWFMDYWNSDGSAAEMCGNGARVFVRYLLESGLAAPSGAVLPVATRAGVVRARVEG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +G ++V+M P L + + L L V +GNPH + V Sbjct: 121 EG-VAVEMRRPRLAGA----------------SVAGLGGLALP-GTAVDVGNPHLVCPVP 162 Query: 173 DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACG 226 L L P+ F GVN+ V + +R +ERG T +CG Sbjct: 163 AGLELSALD-LTRAPEFDPVVFPAGVNVEFVTVGDPVDGADGHVRMRVYERGSAETHSCG 221 Query: 227 SAACASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + ACA + + V+V + GG L++ +++G A G++ Sbjct: 222 TGACAVAAVALRDGGRDTGVVAVDVPGGRLVVTLT-TQSCWLSGPAVLVATGEVS 275 >gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378] Length = 329 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 24/297 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L +++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ V L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQTVLDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 A + L K ++V GG + + + + + G A G + Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVS 294 >gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] Length = 271 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 112/286 (39%), Gaps = 27/286 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+++ A + + D + + + A + Sbjct: 1 MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLE--RTAEGAFNL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDM 120 R+ N DGSE + GNG RCV +L + T T G + E + IS M Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YH 177 G P + H V+ + V++GNPH + F + + + Sbjct: 119 GVPQVMP-----------------HSFDVDGVGNVQGVDVNVGNPHFVVFTDAEDFSSHG 161 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + HP F G N+ RV + ++ R +ERGVG T + G+ CAS AS Sbjct: 162 LSWEELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASI 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 L ++ +GG + W + + +TG A+ G++ + Sbjct: 222 ALRGAGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSVD 267 >gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] Length = 288 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 74/302 (24%), Positives = 119/302 (39%), Gaps = 42/302 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST------DDNTHFDQIMLIHDFQDAS 59 V F K G GN L+ + + AI D D ++++ Sbjct: 3 VAFEKYHGTGNDFLIC-GADEAVDWGAFAIEHCDRETGIEVDGRRGADGVLVLSLS---G 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR------------------KSFTFET 101 +R+ DG CGNG RC ++ R++R F +T Sbjct: 59 ERVRMRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDT 118 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G A+ D +I ++MG P + +PLAR + D + ++ Sbjct: 119 PAGERRARVGED-TIEIEMGVPSFEPADVPLAREEPLIRED---------VEGWEVTALN 168 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-G 220 G PHA+ FV DD+ DL + + +F EG N+++A + D RT+ERGV G Sbjct: 169 TGVPHAVVFV-DDVSTTDLGAMAPPIRHAEVFPEGANVNLASPSERG-FDQRTFERGVEG 226 Query: 221 LTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A A + + VSV GG L + D+ ++G + E G++ Sbjct: 227 ETRSCGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286 Query: 280 DI 281 Sbjct: 287 SP 288 >gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] Length = 266 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 27/283 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+I+ A S + + D I + + A F+ Sbjct: 1 MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLE--RRADGSFFL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVDM 120 R+ N DGSE + GNG RCV +L T G+ + I M Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD- 179 G P + + I L + + +V++GNPH + FV+ D + Sbjct: 119 GVPRVMRRAIEL-----------------EGVGVVEGAMVNVGNPHYVLFVDTDDFGSHG 161 Query: 180 --LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G +A P+F G N+ +V S + ++ R +ERG G T + G+ CAS A+ Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKL 279 L R+++ GG + W N M TG A+ G++ Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAEFVCVGEV 264 >gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] Length = 336 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 26/290 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G NK ++D +T + AL+ D ++++++ Sbjct: 1 MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V A +R+IN DGSE CGNG+R V R++ + + SF ET++ L ++ + + Sbjct: 61 PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIETMKADLKVAKHDEFA-- 118 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 G P ++ P+ FD + +R V L + F +++ NPH I F+ Sbjct: 119 --DGVPAYAAEISPVLFDKHDLPFDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176 Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ L G L K+P +S+GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAK 272 A+ +A H ++ ++V GG + H+++ + + G A Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGGMVKTIVHNDDDQYWIELIGNAT 286 >gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] Length = 281 Score = 218 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 27/284 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64 KM+G GN ++ID + A D ++ + D+ D Sbjct: 12 YKMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIW 71 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD-GSISVDMGE 122 N DGS + CGNG RC R + ++ T G + A+ + V + Sbjct: 72 HFYNADGSRAEMCGNGSRCAARLAYELELAGRTHVLGTDAGPVRAEVLPETDEAKVQLTA 131 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + L+ + ++ + G + + + + DLA+ Sbjct: 132 PIDLKTSMTLSAAGRELTVHHVNTGVPHVVQVVDDVD-----------------SVDLAT 174 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 L H F G N++ +VT +++ LRT+ERGV T ACG+ A A+V + L Sbjct: 175 IAPALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAAAVYIANQLG 234 Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A +V GG L I +N ++++ G+A ++G+L +++ Sbjct: 235 LCAPAATVTTSGGEHLTIS-QENGNLYLQGQAVLVYKGRLFLRS 277 >gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] Length = 280 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 41/293 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 +Q + F K +G GN +++D R D+ I + D +M + Q Sbjct: 12 LQYMKLKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGICNRRFGVGGDGMMFLQ--QKD 69 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDG-SI 116 D + N DG CGNG RC+V F ++ F + G AK + G + Sbjct: 70 GYDFEMVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSGDWV 129 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 S+ M ++ D ++ V++ G+PH + V DDL Sbjct: 130 SLQM------------------INVDVIKKDGEDY-------VLNTGSPHYVRLV-DDLQ 163 Query: 177 HYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 + D+ G + + + +G+N++ + L +RT+ERGV T ACG+ A + Sbjct: 164 NVDMYEEGRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAVAL 222 Query: 235 ASGCLHKTNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281 A +S VK+LGG L I + + +F+ G AKK +EG+LD+ Sbjct: 223 AMAKYQNRTGEISTPVKVLGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDL 275 >gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 328 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 37/324 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE- 119 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ + FD + +R V L F +++ NPH I F+ Sbjct: 120 ---GVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274 AS +A L + +SV GG + H +H + + G A + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPED 296 Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296 G++ ++ K K+ + AY Sbjct: 297 QLHSGQVKLEAVK-TKETGEQAAY 319 >gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec] gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec] Length = 307 Score = 218 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 123/301 (40%), Gaps = 36/301 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI-------HDFQD 57 V F K G GN L++ +++ + + AL D ++ + Sbjct: 11 VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS 115 A+ F+ N DGS + CGNG+R R+L T G+ + G Sbjct: 71 AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V+MG P L +P+ + + VSMGNPHA+ F DDL Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREFAAVP----------------VSMGNPHAVCF-ADDL 173 Query: 176 YHYDLASFG--NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 LA F EGVN+ + V + + + +R +ERGVG TA+CG+ ACA Sbjct: 174 DPAGLARLDLRAPAYPAAAFPEGVNVEVV-VPAPDGVAMRVFERGVGETASCGTGACAVA 232 Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 VA + V V + GG L + W ++ V ++G A +G L W++ Sbjct: 233 VAWAARNGDGPPAEVEVDLPGGRLTVGWRES-TVLLSGPAVLVSDGVLRP---DWLRAAG 288 Query: 292 D 292 Sbjct: 289 G 289 >gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 329 Score = 218 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 28/300 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL+ D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L S Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ + FD +D D V F +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ + D L G L +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 >gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] Length = 242 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103 DQ+++I + A D F+ I N DGS+ + CGN RCV L S + T E + Sbjct: 22 GCDQVIVITNSSLA--DCFMHIYNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNK 79 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 IL + D SI V+MG+P+L W IPL+ D + P+ L++P V++G Sbjct: 80 RILECFKVGDKSIKVNMGKPLLKWHKIPLSTECDTLHL------PIELEMLKDPVAVNIG 133 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPH +FFV D + L S G L H +F + +N+SIA+V + LR WERG G+TA Sbjct: 134 NPHIVFFV-DSVNEIPLQSLGPKLENHALFPQKINISIAQVEKSGEIALRVWERGTGITA 192 Query: 224 ACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +CGSAACA++V S T + SV + GG LLIEW N+VFMTG Sbjct: 193 SCGSAACAALVTSTLRGYLTVQQTSVNLPGGKLLIEWA--NNVFMTG 237 >gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] Length = 329 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 28/300 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL+ D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L S Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ + FD +D D V F +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ + D+ G L +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 >gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] Length = 256 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 30/278 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D + I AL T D +L+ + + D +R N Sbjct: 1 MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG CGNG RC F + + + +F+ A + + M EP Sbjct: 59 DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEPDTFRD 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 I H N V+ G+PH I + +L +++ G + Sbjct: 119 DI--------------------HANGLNCHFVNTGSPHTIIYT-GELETFNVHDTGYAVR 157 Query: 189 -KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH--KTNR 244 + +F EG N++ +VT +SL +RT+ERGV T ACG+ A A+ + S L + Sbjct: 158 NNNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTS 217 Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 G L +E+ ++ VF++G AK + G + + Sbjct: 218 VSVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255 >gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] Length = 293 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 118/291 (40%), Gaps = 38/291 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQDAS 59 K G N +++ I + AL D ++ + ++ Q A Sbjct: 13 TKGHGTENDFVIVPDPDGTLEIAPSRVAALCDRRAGIGADGVLRVVRTARMPGYEDQAAE 72 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--------SFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R F+T+R K F T GI Sbjct: 73 AEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGTRGGIKRVTLR 132 Query: 112 RDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 G ++VDMG P+ P R +D H R+ V MGNPHA Sbjct: 133 ATGENTADVTVDMGIPVF-----PTERGAVTVDV---------HGTPRDAVDVDMGNPHA 178 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + FV+ L ++ +++EGVN+ A + L +R +ERGVG T +CG+ Sbjct: 179 VVFVDSTDDAGSLYEM-PTVSPTGVYAEGVNVEFAADVAPRHLAMRVYERGVGETRSCGT 237 Query: 228 AACASVV--ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 ACA ++ A +V +LGG L + H+ MTG A ++ Sbjct: 238 GACAVMIAAARRDAADAGTEYTVDVLGGRLRFVERADGHLEMTGPAALVFD 288 >gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 328 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 37/324 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + + F ET+ L ++ D + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETMYADLAVRQADDFAE- 119 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ + FD + +R V L F +++ NPH I F+ Sbjct: 120 ---GVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274 AS +A L + +SV GG + H +H + + G A + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPED 296 Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296 G++ ++ K K+ + AY Sbjct: 297 QLHSGQVKLEAVK-TKETGEQAAY 319 >gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026] Length = 333 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 28/299 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61 K+ G N ++D +T+ + + D ++ I+ Sbjct: 5 YKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L +++ + + G Sbjct: 65 AQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDN----LAKG 120 Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174 ++ P+ + F + +R + ++ F +++ NPH I F++ + Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180 Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L G L +P F +GVN++ A++ L +RT+ERGVG T ACG+ A+ Sbjct: 181 IESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240 Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285 +A N++++V GG + H NH + + G A + +++I Sbjct: 241 LAFCLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297 >gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] Length = 326 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 24/290 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQ 56 VD K+ G N+ ++D +T D + + TD N D ++LI Sbjct: 1 MQVDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTN 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD--- 113 D +R+IN DGSE CGNG+R V R+L+ + K+ F ET+ L K+ + Sbjct: 61 HKETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKKAEELGK 120 Query: 114 --GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + V++ + + +P +K N F V++ NPH I FV Sbjct: 121 DIQTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRF----SAVAVPNPHLISFV 176 Query: 172 EDD-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + LY L K+P F +GVN+S V +SL +RT+ERGVG T ACG+A Sbjct: 177 DHETLYSSQFEDLATYLNGKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGTAM 236 Query: 230 CASVVASGCL--HKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273 AS + L + + V GG + + ++ +M G A Sbjct: 237 AASSLMYVLLKNGQLEEKIQVTNPGGMVQTVVHKDEDGTYWMDLIGNATY 286 >gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] Length = 341 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 29/305 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-----DAINALSTDDNTH--FDQIMLIHD 54 + ++ K+ G GN ++D I+ AI H D I+ + Sbjct: 12 RGKPMELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLP 71 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 V +R+IN DGSE CGNG+R V R+L+ + +KSF T+ L ++ + Sbjct: 72 ETRGDVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANE- 130 Query: 115 SISVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIF 169 + G ++ P++ S D + ++ H + L F V++ NPH I Sbjct: 131 ---LAPGVKTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKFSAVAVPNPHLIS 187 Query: 170 FVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV+ + L DL + L ++ +F +GVN+S + S + + +RT+ERGVG T ACG Sbjct: 188 FVDHETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACG 247 Query: 227 SAACASVVASGCLHKTN-----RAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277 +A AS + L KT+ + +SVK GG + + ++ + FM+ G + Sbjct: 248 TAMSASSLM-YVLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMSLIGNGTFVAKC 306 Query: 278 KLDIK 282 + + Sbjct: 307 TVSLD 311 >gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 283 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 25/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQD-ASVD 61 V F KM+G GN + ID R + D + + D ++ + + D VD Sbjct: 9 VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISVD 119 N DGS + CGN RC T G + A+ + G + V+ Sbjct: 69 YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + L + R D+ V+ G PHA+ +++ D D Sbjct: 129 LTPPK-ELSLNNVLRFGDE---------------THEIHFVNTGVPHAV-WLDADAAALD 171 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + + G L H F G N + V ++ LRT+ERGV T ACG+ A A V + Sbjct: 172 VRALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITH 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T V+V+ GG LL ++ VF+ G+A + G++ ++ Sbjct: 232 ALGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPES 277 >gi|302866047|ref|YP_003834684.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029] gi|302568906|gb|ADL45108.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029] Length = 281 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 103/297 (34%), Gaps = 38/297 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59 ++F K G GN +++ ++T + AL D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG R VR+L R + T G++ A+ Sbjct: 61 AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLTAPSGGTLPIATRAGLVRARVEG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + ++V+M P L V +GNPH + + Sbjct: 121 ED-VAVEMRRPRL-----------------YDTATATLGGLTLPGTAVDVGNPHLVCALP 162 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227 L L F GVN+ + +R +ERG T +CG+ Sbjct: 163 AALELTALDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 ACA + + ++V + GG L + + +++G A G L Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAA 278 >gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785] gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785] Length = 333 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 28/299 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61 K+ G N ++D +T + + D ++ I+ Sbjct: 5 YKVHGSQNHFFILDQTELSTPLTDTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L +++ + + V Sbjct: 65 AQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKEVK-- 122 Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174 ++ P+ + F + +R + ++ F +++ NPH I F++ + Sbjct: 123 --AFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180 Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L G L +P F +GVN++ A++ L +RT+ERGVG T ACG+ A+ Sbjct: 181 IESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240 Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285 +A N+++ V GG + H NH + + G A + +++I Sbjct: 241 LAFCLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297 >gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] Length = 257 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 39/285 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + F K +G GN ++ID R + IN L D ++L+ + D +D Sbjct: 1 MQITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG+E CGNG RC+V F + ++ TF + G+ A D Sbjct: 59 FKMVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKTTFNAVDGLHNATIKGD------- 111 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I+ ++I +A +K N + G+PH + V D++ +D+ Sbjct: 112 ---IVSLQMIDVAEVKEK----------------ENYSFLDTGSPHHVQLV-DNVNGFDV 151 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + G + G N++ + +RT+ERGV T +CG+ A +A Sbjct: 152 FTEGKKIRYGLYGEAGSNVNFVTKNAKGY-TVRTYERGVEDETLSCGTGVTAVALAMHKS 210 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 TN + +K++GG L I + + +V++TGEAK+ ++G++ Sbjct: 211 GNTNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255 >gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] Length = 333 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 28/299 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61 K+ G N ++D +T+ + + D ++ I+ Sbjct: 5 YKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +R+IN DGSE CGNG+R V R+L + + +F +T+ L +++ + + G Sbjct: 65 AQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANLRVRKHDN----LAKG 120 Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174 ++ P+ + F + +R + ++ F +++ NPH I F++ + Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180 Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L G L +P F +GVN++ A++ L +RT+ERGVG T ACG+ A+ Sbjct: 181 IKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240 Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285 +A N+++ V GG + H NH + + G A + +++I Sbjct: 241 LAFCLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297 >gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99] Length = 329 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 28/317 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SD A L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ + L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDTELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQSVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279 A + L ++V GG + + ++ + + G A +G + Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIGNATFVSKGSVRYEN 297 Query: 280 DIKTGKWIKKNEDDEAY 296 DI T + + Y Sbjct: 298 DIVTELTNEATAEQALY 314 >gi|315502606|ref|YP_004081493.1| diaminopimelate epimerase [Micromonospora sp. L5] gi|315409225|gb|ADU07342.1| diaminopimelate epimerase [Micromonospora sp. L5] Length = 281 Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 102/297 (34%), Gaps = 38/297 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59 ++F K G GN +++ ++T + AL D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG R VR+L R + T G++ A+ Sbjct: 61 AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLAAPSGGTLPIATRAGLVRARVEG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++V+M P L V +GNPH + + Sbjct: 121 AD-VAVEMRRPRL-----------------YDTATATLGGLTLPGTAVDVGNPHLVCALP 162 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227 L L F GVN+ + +R +ERG T +CG+ Sbjct: 163 AALELTGLDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 ACA + + ++V + GG L + + +++G A G L Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAA 278 >gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067] Length = 332 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 135/320 (42%), Gaps = 34/320 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D + + SDA A L + D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111 +A ++++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVKKASSLGF 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + V++ + +P+ +K+ F VS+ NPH I FV Sbjct: 122 DIPTYQVEISPVNFKPESLPMNLPVEKLINQVVPELDAELAF----SAVSVPNPHLIAFV 177 Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L ++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKE------WEG 277 A + L + ++V GG + + ++ + + G A ++G Sbjct: 238 SACSLIKKMLDRDVLETPLNVYNDGGRVQVTAKEDAKGELSLQLIGNATFVNVGTVSYDG 297 Query: 278 -KLDIKTGKWIKKNEDDEAY 296 +++ T + + +Y Sbjct: 298 DEVEPLTNE---ATPEQASY 314 >gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] Length = 313 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 34/307 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--- 56 + ++ + FAK G N +++D R ++T + + AL+ D ++ + Sbjct: 6 VPTTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALA 65 Query: 57 --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIR 103 + + F+ N DGS Q CGNG+R +L + T Sbjct: 66 EGRAVLAHEPAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLGTRA 125 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G ++ G +VDMG + FD + + P R V +G Sbjct: 126 GARRVRKEDSGWYAVDMGVWSFPGGDAAVRDGFDA-EVTVSGLEPAGTQVPRPALSVDLG 184 Query: 164 NPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDL 212 NPH + + DDL DL + ++L P+ +EG N+ + E+ + + Sbjct: 185 NPHTVVALASLDDLDRADLHTAPDVL---PLPAEGTNVELVVPLGEETSVDGTVVGRVRM 241 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGE 270 R ERGVG T +CG+ ACA+ +A V + GG + + ++ HV + G Sbjct: 242 RVHERGVGETRSCGTGACAAALAVRAWAGAGAPDVWLVDVPGGTVRVTLLEDGHVELAGP 301 Query: 271 AKKEWEG 277 A +G Sbjct: 302 AVLVADG 308 >gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712] Length = 268 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 34/280 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD--------ASVDAFIRIINCD 70 +V D D + D ++ + + F+ N D Sbjct: 2 IVPDAENAVDLPPAVVARLCDRRAGIGGDGLLHVVRSAAHPEARHMADEAEWFMDYRNAD 61 Query: 71 GSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 GS + CGNG+R R+L + T G+ ++DGS++V MG +L Sbjct: 62 GSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAMGRAVLAEA 121 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + + V+MGNPHA+ FVED + +L + Sbjct: 122 GVTVTVDGRS----------------WPARNVNMGNPHAVAFVEDLDHAGNLFTEPPY-E 164 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR---- 244 ++ +GVN+ + +R ERG T +CG+ ACA VA+ + Sbjct: 165 PAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAVAVATARRDGADPAETG 224 Query: 245 ---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +V +LGG L+I H + + MTG A EG +D Sbjct: 225 TPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVDP 264 >gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] Length = 329 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 28/300 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL+ D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L S Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ + FD +D D V F +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ + D+ G L +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 >gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 332 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 136/320 (42%), Gaps = 34/320 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D + + SDA A L + D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111 +A ++++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSLGF 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + V++ + K +P+ +K+ F VS+ NPH I FV Sbjct: 122 DIPTYQVEISPVNFNLKSLPMNLPVEKLINQVVPELDAELAF----SAVSVPNPHLIAFV 177 Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L ++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKE------WEG 277 A + L + ++V GG + + ++ + + G A ++G Sbjct: 238 SACSLIKKMLDRDVLEIPLNVYNDGGRVQVTAKEDAEGELSLQLIGNATFVNVGTVSYDG 297 Query: 278 -KLDIKTGKWIKKNEDDEAY 296 +++ T + + +Y Sbjct: 298 DEVEPLTNE---ATPEQASY 314 >gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] Length = 333 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T++ + + + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ A FD + +R V L+ F +++ NPH I FV Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFV 176 Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++L L G L + +P FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 177 SMEELNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282 A+ +A H N +SV GG + I D+ + + + G A + + ++ Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVE 294 Query: 283 TGKWIKKNEDD 293 ++N D+ Sbjct: 295 ESTIHQENLDE 305 >gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816] gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220] gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A] Length = 329 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 28/316 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I+ + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R++N DGS CGNG+R V R+L + ET++ IL K+ + S Sbjct: 63 VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + P ++ P+ + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 + T + + Y Sbjct: 299 VVTELTNEATAEQAQY 314 >gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39] gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39] Length = 270 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 39/291 (13%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDAS 59 + + F K +G GN ++ID R T + + D +ML+ D A Sbjct: 8 EDMKIHFYKYQGAGNDFILIDNRDLSFKYTGNNAVLQLCNRRFGIGADGLMLLQDH--AD 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISV 118 D + N DG CGNG RC+V F S T F + G AK + G+ Sbjct: 66 YDFEMLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGNW-- 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +D ++I D + D +V++ G+PH + V ++L Sbjct: 124 ------VDLQMI----DIDHIGND------------GEAYVLNTGSPHYVAQV-NNLETL 160 Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ G+ + + + EG+N++ + L +RT+ERGV T ACG+ A ++ Sbjct: 161 DVYHEGHSIRNNETYKQEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTAVALSM 219 Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 N + VK+LGG L I + N +VF+ G A++ +EG + I Sbjct: 220 AQHKGQNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270 >gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 328 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 37/324 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M K+ G N ++D + +T + + L+ TD T D I+ + + Sbjct: 1 MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + Sbjct: 61 PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE- 119 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 G P ++ P+ + FD + DR V L F +++ NPH I F+ Sbjct: 120 ---GVPAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G L ++P FS+G+N++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274 AS +A L + +SV GG + H +H + + G A + Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296 Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296 G++ ++ K ++ + AY Sbjct: 297 QLHSGQVKLEAVK-TEETGEQAAY 319 >gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] Length = 330 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 144/327 (44%), Gaps = 37/327 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIH 53 M+ S ++ K+ G GN ++D + +T + + L+ D +T D ++ + Sbjct: 1 MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ Sbjct: 61 AG-HEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADK 119 Query: 114 GSISVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168 + V P D ++ P++ + +++ + L F V++ NPH I Sbjct: 120 LAEKV----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLI 175 Query: 169 FFVEDD-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 FV+ + L +L + L +P+F +GVN+S + + +RT+ERGVG T AC Sbjct: 176 AFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNAC 235 Query: 226 GSAACASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277 G+A AS + LH + ++V GG + + +N +M+ G A + + Sbjct: 236 GTAMSASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKV 295 Query: 278 KL--------DIKTGKWIKKNEDDEAY 296 + + W + + AY Sbjct: 296 NISQADAINGNFDNFTW-NETGEQAAY 321 >gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] Length = 329 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 28/316 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I+ + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R++N DGS CGNG+R V R+L + ET++ IL K+ + S Sbjct: 63 VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + P ++ P+ + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNNILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 I T + + Y Sbjct: 299 IVTELTNEATAEQAQY 314 >gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 263 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 41/283 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G GN +++D R T + D ++L+ + D + D Sbjct: 1 MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F M S F I G A + + + M Sbjct: 59 MVYYNADGRESTMCGNGGRCVVAFAREIGVMTGNSTRFIAIDGEHHATIDAQNKVHLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 D + I + + + G+PH + +V D+ D+ Sbjct: 119 ----DVQTIDVHPDY---------------------VFLDTGSPHHVQWVA-DVDKVDVK 152 Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L ++++ G N++ T+ +RT+ERGV T +CG+ A +A Sbjct: 153 TEGAALRYGDLYADKGGSNINFVSPTADG-FAVRTYERGVEDETYSCGTGVTAVAIALYH 211 Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276 + V++ GG L + + V+++G A+K ++ Sbjct: 212 TAQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFK 254 >gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] Length = 329 Score = 215 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 28/316 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I+ + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R++N DGS CGNG+R V R+L + ET++ IL K+ + S Sbjct: 63 VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + P ++ P+ + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 I T + + Y Sbjct: 299 IVTELTNEATAEQAQY 314 >gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] Length = 329 Score = 215 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 72/295 (24%), Positives = 127/295 (43%), Gaps = 24/295 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I+ + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R++N DGS CGNG+R V R+L + ET++ IL K+ + S Sbjct: 63 VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + P ++ P+ + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279 A + L ++V GG + + + + + G A +G + Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 293 >gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f] gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f] Length = 311 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 126/304 (41%), Gaps = 37/304 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI--------HD 54 V + K G GN +++ +++ + A+ D ++ + Sbjct: 9 RRVRYVKGHGTGNDFVILPDADGDLDLSVQLVRAICHRGTGVGADGVLRVVLVAAEPAAA 68 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG+R R+L S T G+ Sbjct: 69 AYLGAARWFMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPP 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G +SVDMG P +P+ + R+ +G VSMGNPHA+ F Sbjct: 129 AGDVSVDMGPPEFASGTVPVTV----VGREFAAVG------------VSMGNPHAVCF-A 171 Query: 173 DDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 DDL +LA G + F +GVN+ + V S + + +R +ERGVG TA+CG+ AC Sbjct: 172 DDLGPSELARLDLGVPVFPAEAFPDGVNVEVV-VPSADGVAMRVFERGVGETASCGTGAC 230 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 A VA V V + GG L ++W + V + G A +G L +WI+ Sbjct: 231 AVAVAWAARVGGTPPSEVLVDLPGGRLTVDWRET-TVILRGPAVLVSDGVLRP---EWIR 286 Query: 289 KNED 292 + Sbjct: 287 QATG 290 >gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] Length = 259 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 122/294 (41%), Gaps = 56/294 (19%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ +GN + ++ S LS D ++LI + A D + Sbjct: 1 MRFTKMQALGNDYIYVNAMEEKIENPSVLAQKLSDRHFGVGGDGLILIDFSEKA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD---GSISVD 119 R+ N DG+E + CGNG+RCV +++ +K K+ ET GI+ K + +I D Sbjct: 59 RMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILAD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+P + + + ++ D SMGNPH + +V DD Sbjct: 119 MGQPSIGEENKKIVMGEEEYTADYI----------------SMGNPHLVVYV-DDPKRIQ 161 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-----------ACGSA 228 + + E VN+ V + + +R ERG G T +C Sbjct: 162 MKEWQEY--------EKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSC--- 210 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + V V+M GG L +EW + NH+F GEAK +EG++DI Sbjct: 211 --------MKKQYVDNYVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256 >gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] Length = 424 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 110/294 (37%), Gaps = 24/294 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + M F K G N +++ +T + L+ D ++ I + A+ D Sbjct: 140 TVMTRFTKGHGTENDFVLVPDPEGTLELTPAQVQRLADRRAGIGGDGVIRIVPTRHATED 199 Query: 62 ----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109 F+ N DGS + CGNG R FL + +F T GI + Sbjct: 200 SVRAQAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVR 259 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +G +VD+G + FD M R R H +GNPHA+ Sbjct: 260 VVPEG-FAVDLGPWRYGDEQGARRDGFDIMVRPR-------HGKPVPALTFDLGNPHAVV 311 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + D + +L P G+N+ + + +R ERGVG T +CG+ A Sbjct: 312 MLPDGIELENLDLTAPP-DVQPAQPNGINVEFVKAVGPAHIAMRVHERGVGETRSCGTGA 370 Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ +A+ V + GG L + N V + G A+ +G + + Sbjct: 371 AAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424 >gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 328 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 37/319 (11%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDASVDA 62 K+ G N ++D + +T + + L+ TD T D I+ + + V Sbjct: 6 KVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASHPGVLG 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R+IN DGSE CGNG+R V R+L + F ET+ L ++ D + G Sbjct: 66 KMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE----GV 121 Query: 123 PILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV-EDDL 175 P ++ P+ + FD + +R V L F +++ NPH I F+ E+DL Sbjct: 122 PAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKEEDL 181 Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L G L ++P FS+GVN++ + L +RT+ERGVG T ACG+ AS + Sbjct: 182 ESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSASSL 241 Query: 235 ASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE----------WEG 277 A L + +SV GG + H +H + + G A + G Sbjct: 242 AFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPEDQLHSG 301 Query: 278 KLDIKTGKWIKKNEDDEAY 296 ++ ++ K K+ + AY Sbjct: 302 QVKLEAVK-TKETGEQAAY 319 >gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 279 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA-F 63 + F + G+GN LV R +++ I + D +++ + D Sbjct: 1 MIFHRYHGLGNDYLVCHHRVAAL-LSNQQIRRICDRHYGIGSDGLLI----DNDDADIPS 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR-DGSISVDM 120 +RIIN DGSE + GNG+R R+L R+ + F T G + + + VDM Sbjct: 56 LRIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGGHVRCEVTDGAHQVIVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +P + D+ G N + +VSMGNPH + V D L + Sbjct: 116 GQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRV-DKLDLDLV 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ + +F + N+ A+V ++ + WERG G T A GS++CA+ A L Sbjct: 171 KQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKLG 230 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + V+V+M GG L I + + V M G +K Sbjct: 231 LVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQKIA 265 >gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] Length = 335 Score = 214 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 26/298 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-------DNTHFDQIMLIHDFQ 56 M K+ G N ++D +T D + L+ D ++++ Sbjct: 1 MMTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLARQLTDPQDGLLGGADGLLVVDRPT 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ + Sbjct: 61 RPGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQAGE--- 117 Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFF 170 + G P ++ P+ A FD + DR PV L +++ NPH I F Sbjct: 118 -LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISF 176 Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V ++ + L G+ L +P FS+GVN++ A++ + L +RT+ERGVG T ACG+ Sbjct: 177 VNQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFTNACGTG 236 Query: 229 ACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 A+ +A LH + AV+V GG + H +H + + G A + ++ Sbjct: 237 MSATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRYWIELIGNATFTHQLEI 294 >gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] Length = 279 Score = 214 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 109/280 (38%), Gaps = 26/280 (9%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM+G GN +VID R +++ A + D I+ + Sbjct: 11 FYKMQGSGNDFIVIDNRAKTISPEDMPRWAKTLCPHAFSIGADGIIFLEIDDSGQAATRW 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKE-NRDGSISVDMGE 122 N DGS + CGNG RC M T G + A+ G + V + Sbjct: 71 HFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHLMLTDAGTVHAQVFPEAGEVDVQLTP 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + L + D DR + G PHA+ V D+ D+ Sbjct: 131 A----RDMALNFTLDLDDR------------TFAAHFANTGVPHAVI-VTPDVKSIDVKG 173 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH 240 G + H F G N + +V S L LRT+ERGV T ACG+ A ASV + L Sbjct: 174 LGAKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGTGAAASVAVAHALG 233 Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 V GG L I H ++ +F+ G+A+ ++G+ Sbjct: 234 LCESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272 >gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 281 Score = 214 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 14/277 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGSI-SVDMGEPI 124 DGSE + GNG+R R+L +K + + T G LV + GS VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITV 275 >gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] Length = 284 Score = 214 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 46/299 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD----- 61 F K G GN +V+ +++ I L D ++ + + A++D Sbjct: 6 FTKGHGTGNDFVVLADPDGELDLSDAQIAVLCDRHFGIGADGLLRV--VRSAAIDEGAEA 63 Query: 62 ------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENR 112 F+ N DGS+ + CGNG R R+L+ T G+ + Sbjct: 64 AASGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLTRSE 123 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G VD+G ++ + R + +GNPH + V Sbjct: 124 RG-YEVDLGAFAIEATD--------------TLVRAKGLPVARPGVGIDVGNPHVVVAVA 168 Query: 173 DD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAA 224 D L DL ++ +L P G N+ ++ LR +ERGVG T + Sbjct: 169 SDAELEALDL-TYQPVLDPAPR--HGANVEFVVPADPLVQEGVGAIRLRVFERGVGETLS 225 Query: 225 CGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CG+ A+ +A + +V GG L + + HVF++G A + G++ + Sbjct: 226 CGTGVAAAALAVRHWAGSAAPDVWTVDTPGGTLGVRVA-DGHVFLSGPASLVFTGEVTL 283 >gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 266 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 30/281 (10%) Query: 8 FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F+K G GN ++ID R D S D ++L+ A D +R Sbjct: 5 FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DG E + CGNG+RC+V+F +++K +T +T+ +L A D SI++ M +P Sbjct: 63 IFNADGYETEMCGNGIRCLVKFAQEIGIQKKHYTIQTMHSLLEAFPFGD-SITISMTDPA 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +D L V G PHA+ FV D+L + Sbjct: 122 --------EIEWDTQIEV--------DQTLLTVHWVDTGVPHAVIFV-DELEEARWMTLA 164 Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + HP F +GVN++ A++ E + LRT+ERGV T ACG+ A A+ +A+ + Sbjct: 165 PKIRAHPHFSPKGVNVNFAQIK-KEEISLRTYERGVEQETLACGTGATAAAIAAAKIQGI 223 Query: 243 NRAVSVKMLGGG-LLIEWHDNN---HVFMTGEAKKEWEGKL 279 + VS+K G L I++ +V +TG A ++G L Sbjct: 224 SSPVSIKTRSGDNLEIQFEKTTKFRNVRLTGPAICTFKGVL 264 >gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] Length = 285 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 10/266 (3%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G+GN LV D + + + L D N ++ + +RI N Sbjct: 7 KYHGLGNDYLVFDPNKNEMELNEENVRLLC-DRNYGIGAEGILEGPVFETEQMGVRIWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA-KENRDGS-ISVDMGEPIL 125 DGS+ + GNG R ++L +++++F F+T G + N DGS I + +G+ Sbjct: 66 DGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVGKASF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + ++ ++ + + GN Sbjct: 126 WSDEIPVTGERREVVDEDMVFG----RNLYPTTCVSVGNPHCVIPMK-EVSKHLVCKIGN 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N + +V E++ + +ERGVG T A GS+ACA+ A+ L TN Sbjct: 181 HSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYKLGLTNPG 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271 V+V M GG L +E ++ +F+TGE Sbjct: 241 VTVHMPGGELQVEIQEDWEIFVTGEV 266 >gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] Length = 259 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 40/287 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++F K + GN ++I+ + I L + D ++LI ++ D Sbjct: 1 MKINFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +++ N DG E CGNG RC V F + + + F++I G A + +S++M Sbjct: 59 YMKYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKSIDGYHYASI-KQNIVSLNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 L K+ + +I + G+PH I F ++ + + ++ Sbjct: 118 KNVEL-----------VKVYPEHIYI--------------NTGSPHHILF-KEKINNINV 151 Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G + GVN++ ++ + L++RT+ERGV T +CG+ AS +A+ Sbjct: 152 YKEGKKIRFNQKYIKTGVNVNFVKI-NKNILNVRTYERGVENETFSCGTGVTASAIAAYH 210 Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLD 280 + K + VK LGG L +++ +F+ GE ++G ++ Sbjct: 211 IKKILYNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257 >gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] Length = 258 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 38/282 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++ID R + D ++L+ + D +VD + Sbjct: 5 FYKYQGTGNDFVMIDNRSKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFKMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG++ CGNG RC+V F M K F I G+ A +G +++ M Sbjct: 63 YFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATIT-NGVVNLKMNNV- 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D + P + F + G+PH + V+ DL + + G Sbjct: 121 -----------------DEIVVKP-------SSFFLDTGSPHHVQLVK-DLGSFQVFEEG 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + EG N++ T + +RT+ERGV T +CG+ A +A K + Sbjct: 156 KKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIAMHKAKKVD 215 Query: 244 RAV-SVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKLD 280 V + GG L + E++ ++V + G AK+ ++G++ Sbjct: 216 SNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEMS 257 >gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 281 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 14/277 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD--GSISVDMGEPI 124 DGSE + GNG+R R+L +K + + T G + D + VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITV 275 >gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] Length = 329 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 28/317 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L +++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ + L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279 A + L ++V GG + + + + + G A +G + Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEN 297 Query: 280 DIKTGKWIKKNEDDEAY 296 DI T + + Y Sbjct: 298 DIVTELTNEATAEQAQY 314 >gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459] gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 329 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 24/295 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I+ + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R++N DGS CGNG+R V R+L + ET++ IL K+ + S Sbjct: 63 VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118 Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + P ++ P+ + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279 A + L ++V GG + + + + + G A +G + Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 293 >gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] Length = 333 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 138/311 (44%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N ++D + + + + + + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ A FD + R V L+ F +++ NPH I FV Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFV 176 Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++L L G L + +P FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 177 SMEELNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282 A+ +A H N +SV GG + I D+ + + + G A + + ++ Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVE 294 Query: 283 TGKWIKKNEDD 293 ++N D+ Sbjct: 295 ESTIHQENLDE 305 >gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] Length = 286 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 14/279 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D + + L + D ++ + + + N Sbjct: 7 KYHGLGNDYLVFDPNKNKLELNPHNVALLCNRNFGVGADGVL--EGPVLENDRISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDG-SISVDMGEPI 124 DGS + GNG+R ++L +++K F T G + + N +G + MG+ Sbjct: 65 PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKVS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + + D++ + G Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYPVT----CLSIGNPHCVILM-DEISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + V+M GG + +E ++ V +TG+ G + + + Sbjct: 240 KMLVQMPGGTMELEIEEDGTVLLTGDVGFV--GTMKLGS 276 >gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS] gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS] Length = 300 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 20/261 (7%) Query: 36 NALSTDDNT-HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94 D I+ + + VD +R+ N DGSE + CGNG+RC+ RF ++ + Sbjct: 12 KIFCDRAGILGADGILFFQNSDN--VDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQ 69 Query: 95 KSFTFETIRGILVAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 ET++G+ ++ + ++ L+ K IP+ F+ + + Sbjct: 70 NLVFIETLKGVSRVVNEKNIHPGVATYKAELNTISLNTKDIPINVHFESLIKQPLSTLSN 129 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLE 208 F VSM NPH + V D++ +L G +F GVN++ +V Sbjct: 130 KLTFT----AVSMPNPHIVAMV-DNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEA 184 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN--- 263 ++ +RT+ERGVGLT +CGS ++ + + L + ++ + V GG + E NN Sbjct: 185 AIYVRTYERGVGLTNSCGSGMSSASLVACLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHH 244 Query: 264 -HVFMTGEAKKEWEGKLDIKT 283 VF++G A ++ + ++ Sbjct: 245 YSVFLSGNATFIFKNTITYES 265 >gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] Length = 257 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 42/284 (14%) Query: 8 FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K + GN ++ID R G N +S N D ++L+ + D D + Sbjct: 5 FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62 Query: 66 IINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DG CGNG RC +FL + + F G+ A+ + + S+S+ M + Sbjct: 63 YFNSDGRPGSMCGNGGRCITAFAKFL--GIVGDTCRFVASDGLHEARISGE-SVSLRMAD 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +G + H +N ++ G+PH + V L YD+ Sbjct: 120 -----------------------VGEIRHK--KNYSFLNTGSPHHVQEVSG-LEAYDVDR 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G L G N++ + L +RT+ERGV T +CG+ A+ +A K Sbjct: 154 EGKRLRYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGK 213 Query: 242 -TNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 + ++ GG L + + + +++TG A+ ++G L Sbjct: 214 HPEQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTLS 257 >gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988] Length = 329 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 28/317 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D SDA A L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ + L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279 A + L ++V GG + + + + + G A +G + Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEN 297 Query: 280 DIKTGKWIKKNEDDEAY 296 DI T + + Y Sbjct: 298 DIVTELTNEATAEQAQY 314 >gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 285 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 15/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + + G+GN LV D + L + D I+ + Sbjct: 3 ITLERYHGLGNDYLVYDPNKNELELNKANAEMLCNRNMGLGSDGIL--EGPFIGEKHMSL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDM 120 RI N DGS + GNG+R ++L +++K++ T G++ N DGS + + M Sbjct: 61 RIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRISM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +P+ ++ + G L VS+GNPH + + ++ + Sbjct: 121 GKLSFWSDEVPVTGERREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISQPLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 GN F E +N I +V ++ + T+ERG G T A G+ ACA+ + L Sbjct: 176 CKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVAHKLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 T V V M GG L +E +N V+MTGE + +D+ + ++++K Sbjct: 236 MTGNKVVVHMPGGELQVEIDENWEVYMTGEVFYVAK--IDL-SNEFVEK 281 >gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] Length = 292 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 117/310 (37%), Gaps = 52/310 (16%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD- 61 + ++F K +G GN ++ +T + A+ D I+ + +++D Sbjct: 2 ATLNFTKGQGTGNDFVLFSDPEGQLELTPQQVAAICDRRFGVGADGIL--RAVRSSNIDV 59 Query: 62 ------------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104 F+ N DG+ + CGNG+R +L + T G Sbjct: 60 GAAALAEDADAEWFMDYRNADGTAAEMCGNGIRVFAHYLAENGFVDFEPGDTLPVGTRSG 119 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + N G DMG LD PL R+ + R +++GN Sbjct: 120 VRDVQRNMAG-YQADMGRWSLDGGE-PLVRAKE-------------LDVARPGLGINVGN 164 Query: 165 PHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWE 216 PH + + D+ L H DL ++ P+ G N+ S+ +R E Sbjct: 165 PHVVVALADESELDHVDLNYI-PVI--DPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHE 221 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE---WHDNNHVFMTGEA 271 RG G T +CG+ A A+ +A V + GG +++ D HV ++G A Sbjct: 222 RGSGETLSCGTGAVAAALAIRHYAGAGAPNQWRVAVPGGTVVVRMFPTEDGEHVSLSGPA 281 Query: 272 KKEWEGKLDI 281 + + G L++ Sbjct: 282 ELVYTGSLEL 291 >gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 292 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 12/278 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G+GN V D +T + + + D N ++ ++++ N Sbjct: 8 KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKIYVKVWNP 66 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125 DGSE + GNG R ++L +++K TF T+ G + N DGS + G+ Sbjct: 67 DGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLSF 126 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 127 WSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 181 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N + +V E++ + +ERGVG T A GS ACA+ + L TN Sbjct: 182 YAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNPG 241 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V+V M GG L +E D+ VF TGE GK+ + + Sbjct: 242 VTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSS 277 >gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 171 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 91/178 (51%), Gaps = 9/178 (5%) Query: 106 LVAKENRDGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 +V D I V+MGEPI + IP A F+K R I V VSMGN Sbjct: 1 MVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGN 54 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH + V DD+ ++ G+LL H F E VN ++ + E + LR +ERG G T A Sbjct: 55 PHCVVQV-DDIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQA 113 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 CGS ACA+V N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 114 CGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 171 >gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161] gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818] gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818] Length = 329 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 28/317 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-----HDNITSDAINALSTDDNT--HFDQIMLIHDFQ 56 + + F K+ G N ++D D +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ + Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----AT 117 Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 S+ P ++ P+ + + + ++ + L F VS+ NPH I FV Sbjct: 118 SLGFDIPTYQVEISPVKFASETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177 Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + D + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279 A + L ++V GG + + + + + G A +G + Sbjct: 238 SACSLIKKMLDHDTFETPLNVYNDGGRVQVTAKKDIAGEISLQLIGNATFVSKGSVRYEN 297 Query: 280 DIKTGKWIKKNEDDEAY 296 D+ T + + Y Sbjct: 298 DVVTELTNEATAEQAQY 314 >gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] Length = 289 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 23/284 (8%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--------THFDQIMLI-HDFQDASV 60 K G GN +V+D + + A + + D ++ + + + + Sbjct: 12 KYHGTGNDFIVVDADESVPDRPAFASAHCNRESGIDGDGSERRGADGVLFLALEGRYSPP 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + ++ DGS CGNG RC + R +T G A D ++++M Sbjct: 72 RVVMTLVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVEDD-RVTIEM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +PLAR + ++ + + ++ G PHAI FV DD+ L Sbjct: 131 GAPSFRPRDVPLAREEELVEEEIEGL---------TVTALNTGVPHAIAFV-DDVDAVAL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 S + +F +G N+++A S RT+ERGV G T +CG+ A A V A+ + Sbjct: 181 ESVAPAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRV 240 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I D+ +TG A+ E+E +LD+ Sbjct: 241 GLVDGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284 >gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] Length = 314 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 111/306 (36%), Gaps = 37/306 (12%) Query: 4 SMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ------ 56 S + F+K G GN +++ D G H + D ++ + Sbjct: 17 SGLRFSKGHGTGNDFVLVADPEGAHSIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEGR 76 Query: 57 -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGIL 106 + F+ N DGS + CGNG+R V FL + + T T G+ Sbjct: 77 ELLVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGVK 136 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 +G +VDMG + A++ D + + R VSMGNPH Sbjct: 137 TVVRTGEG-YAVDMGPWEFIFPGEATAKAMDSL------VTAEGLEVPRPALSVSMGNPH 189 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220 + + +L P+ + G N+ + S+ +R ERGVG Sbjct: 190 TVVALA-ELSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVHERGVG 248 Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN----NHVFMTGEAKKE 274 T +CG+ ACA+ VA + + GG + +++ HV ++G A Sbjct: 249 ETQSCGTGACAAAVAIRHWAGAEAPDSWRIHVPGGEVGVKFFAGPGGHEHVELSGPAVIV 308 Query: 275 WEGKLD 280 G L Sbjct: 309 ATGTLS 314 >gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 286 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 113/277 (40%), Gaps = 14/277 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D + + + + D ++ + + + N Sbjct: 7 KYHGLGNDYLVYDPNKNEMKLNPSNVQLMCNRNFGVGADGVL--EGPVISEDRISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDG-SISVDMGEPI 124 DGS + GNG+R ++L +++K FT + G + N +G + MG Sbjct: 65 PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRAS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + + D++ + G Sbjct: 125 FWSSDVPVEGPRREIINETMVFGRIPYPVT----CLSVGNPHCVILM-DEISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 KYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+M GG L IE ++ V MTG+ G + + Sbjct: 240 KMVVQMPGGTLEIEIDEDGVVHMTGDVGYV--GTMKL 274 >gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 211 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 103/293 (35%), Gaps = 33/293 (11%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDASV---- 60 FAK G N +++ ++ A+ L D I+ +H Sbjct: 9 PFAKGHGAENDFILLPDPHGLLDLGPGAVRRLCHRRTGIGADGILRAVHTTAVPEAAAMA 68 Query: 61 ---DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENR--- 112 F+ N DG+E Q CGNG+R R+L T T G+ R Sbjct: 69 ADAVWFMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRT 128 Query: 113 --DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G ++V MG P L HI V MGNPHA+ Sbjct: 129 RFHGPVTVQMGRPRLPGPD---------------HITVTAGTRTWPALHVDMGNPHAVAL 173 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+D + L + + + G + L LR ERG G T +CG+ AC Sbjct: 174 VDDLTHPGPLTT-PPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGAC 232 Query: 231 ASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A+V A+ V GG L + H + + +TG A+ G + + Sbjct: 233 AAVAAATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285 >gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 281 Score = 211 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 14/277 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGSI-SVDMGEPI 124 DGSE + GNG+R R+L +K + + T G LV + GS VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGSV--VYIGKITV 275 >gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 277 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 104/285 (36%), Gaps = 26/285 (9%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------LIHDFQDAS 59 +FAK G N +++ R ++ + L D ++ + + Sbjct: 5 EFAKGHGTMNDFVLLKDRTNSTELSPQDVRYLCDRRAGIGGDGVIRAVWAKYMPSWTGDP 64 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R FL T G E D Sbjct: 65 NMWFMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFR 124 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + + P S D ++ + V +GNPHA+ F+ D+ Sbjct: 125 AGIGHVQVASQ--PTHVSLDGVEYE--------------ATTVDVGNPHAVVFLPADVDL 168 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L ++ G N+ RV S SL +R +ERG G T +CG+ A+ A G Sbjct: 169 ESLDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAAAQG 228 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V + GG L +E D++ +TG A G + + Sbjct: 229 ARLGEQGRFGVDVPGGHLEVE-LDDSMAHLTGPAVIVAHGSVVLP 272 >gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae] Length = 180 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 9/186 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF L ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + ++P F ++ +I + VVSMGNPH + V DD+ + Sbjct: 121 EPNFEPSVVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVETAAVE 174 Query: 182 SFGNLL 187 + G +L Sbjct: 175 TLGPVL 180 >gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 291 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 74/278 (26%), Positives = 120/278 (43%), Gaps = 12/278 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K G+GN V D +T + + + D N ++ ++++ N Sbjct: 7 KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKIYVKVWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125 DGSE + GNG R ++L +++K TF T+ G + N DGS + G+ Sbjct: 66 DGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLSF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 126 WSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N + +V E++ + +ERGVG T A GS ACA+ + L TN Sbjct: 181 YAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNPG 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V+V M GG L +E D+ VF TGE GK+ + Sbjct: 241 VTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSN 276 >gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] Length = 329 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 32/293 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57 M + K+ G N ++D +T D + AL+ + D +++++ Sbjct: 1 MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R + F +T+ L ++ D Sbjct: 61 EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + G P ++ P+ A +D + DR V L F +++ NPH I FV Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASFGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 +++ G L ++P FS+GVN++ + + ++T+ERGVG T ACG+ Sbjct: 177 DEN----GFKELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGT 232 Query: 228 AACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273 A+ +A +H + ++V GG + H NH + + G A Sbjct: 233 GMSATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRYWIELIGNATF 285 >gi|332663347|ref|YP_004446135.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100] gi|332332161|gb|AEE49262.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100] Length = 262 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 42/287 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K +G GN +++D R + + + L D ++L+ + D Sbjct: 4 IPFYKYQGAGNDFIMVDQRDNQWINREDRELVEKLCHRRFGIGADGLILLQNH--PGFDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RC V F + F + G A N + + M Sbjct: 62 EMIYFNADGREGSMCGNGGRCTVAFARQLGVIGDRCHFLAVDGPHDANINNPEWVELKM- 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 I N + ++ G+PH I FV D++ D+ Sbjct: 121 ------------------------IDVTQVEEGSNFYYLNTGSPHYIAFV-DNVDQIDVV 155 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + + F +EG N++ + + L + T+ERGV T ACG+ A+ +A Sbjct: 156 QEGRAVRYNARFRAEGTNVNFTQ-LTANGLKVATYERGVEDETLACGTGVTAAALAYHLK 214 Query: 240 HKTNR---AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 + V +++ GG + I + + V++ G AK + G++ Sbjct: 215 RGGPKGAFEVPIQVKGGDMAIRFEATAQGFSDVWLCGPAKMVFAGEI 261 >gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] Length = 333 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D Sbjct: 61 PGSVAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P+ A FD + +R V L+ F +++ NPH I FV Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISFV 176 Query: 172 E-DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++L L G L + FS+GVN++ + L ++T+ERGVG T ACG+ Sbjct: 177 SMEELNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273 A+ +A H N +SV GG + I D+ + V + G A Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWVELIGNATF 287 >gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] Length = 282 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 25/286 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57 + + V F K+ G GN + ID R ++ D ++ D ++ + Q Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115 D N DGS + CGN RC F T GI+ A + G Sbjct: 64 HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAVADVEAGY 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ P D + V+ G PHA+ F D + Sbjct: 124 AKVELTRPR------------DLAAGTTLELEGTPFTV----HFVNTGVPHAVVF-SDSV 166 Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 DL G L HP F G N + A + ++ LRT+ERGV T ACG+ A A+ Sbjct: 167 DGLDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATA 226 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L T+ +V V+ GG +L ++ +F++G+A + + G++ Sbjct: 227 FIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272 >gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] Length = 358 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 67/340 (19%) Query: 9 AKMEGIGNKILVID-------MRGCHDNITSDAINALS-----TDDNTHFDQIMLIHD-F 55 +KM G GN +V ++ + I+ ++ DQ++++ D Sbjct: 19 SKMHGAGNDFVVFHINAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCDQLIIVDDSP 78 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---------FETIRGIL 106 ++ + + +INCDG CGNG+RC ++L + ET G++ Sbjct: 79 KNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQLIETKSGVI 138 Query: 107 VAKENRDGS-----------ISVDMGEPILDW---------KLIPLARSFDKMDRDRFHI 146 D + V+MG+P L + I S + I Sbjct: 139 KTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIPPKESFVITI 198 Query: 147 GPVNHLFLR--NPFVVSMGNPHAIFFVE--------------DDLYHYDLASFGNLLAKH 190 +N + +VS G HA+ F++ +DL ++ + + +H Sbjct: 199 DDLNLPYCNKIEIVLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSKINIKDLADKIQEH 258 Query: 191 PMFSEGV--NLSIAR--VTSL--ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243 P+F + N+ + + R ERG G T ACG+ ACA +A+ L+ N Sbjct: 259 PLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACAVGIAAYLLNYVND 318 Query: 244 -RAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 +S +M GG LLI+W + N F TG A + + + Sbjct: 319 SSDISCEMPGGNLLIQWSSETNETFKTGPAVTLFNSEFTV 358 >gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] Length = 272 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 104/285 (36%), Gaps = 32/285 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V+F K G N +V+ ++T + AL D ++ + F+ Sbjct: 3 VEFLKGHGTENDFVVLPDVDNELDLTEGRVRALCDRQRGLGADGVLRVVRLDLGP--WFM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+R R+L F T G + DGS++V MG Sbjct: 61 DYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L + + + V +GNPH + + DL Sbjct: 121 VRLTGESTAVLGGVE-----------------FAGVGVDVGNPHLACVTDVPVAGLDLRD 163 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGSAACASVVAS 236 + +F GVN+ V + L +R ERGVG T +CG+ A+V + Sbjct: 164 APS--HDAALFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVASW 221 Query: 237 GC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + A V + GG + + + +TG A G+LD Sbjct: 222 LRGTGRATGAADVLVPGGRVRVTVDEGGS-TLTGPAVLLARGELD 265 >gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614] gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614] Length = 279 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 39/287 (13%) Query: 7 DFAKMEGIGNKILVI-DMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 F K G N +++ D+ G H ++++D + AL D ++ + F Sbjct: 14 PFLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRVLRTDAG---WF 70 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG+R VR L + +T G+ V + D I+ DM Sbjct: 71 MDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDGD-LITADM 129 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + + +G V+ V MGNPHA+ FV+ H + Sbjct: 130 GRPRV-------------LGETVVGVGTVSWPARH----VDMGNPHAVAFVDSLDPHGPV 172 Query: 181 ASFGNLL----AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-----ACA 231 G LL F +G N+ + +R ERG G T +CG+ A Sbjct: 173 ---GPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAA 229 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V + A V + GG L + W ++ V +TG A G Sbjct: 230 AVADGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPAVIVARGT 276 >gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440] gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440] Length = 280 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 40/294 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDASVD-- 61 ++F K G GN +++ +T D + A+ D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLELTPDLVAAVCDRRQGIGGDGVLRVVRAARHPEGAAL 60 Query: 62 -----AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 F+ N DGS + CGNG R VR+L +F T G++ A+ Sbjct: 61 AGAAEWFMDYWNSDGSVAEMCGNGARVFVRYLLEAGLAVPSGAAFPVATRAGLVRARVEG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +V+M P L I V V +GNPH + V Sbjct: 121 EEL-AVEMRRPRLAGASI-----------------AVLDGLALPGTAVDVGNPHLVCPVP 162 Query: 173 DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACG 226 L L P+ F GVN+ + +R +ERG T +CG Sbjct: 163 AGLELAALD-LNRAPEIDPVIFPTGVNVEFITPGDPTGGTDGYVRMRVYERGSAETRSCG 221 Query: 227 SAACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ACA + V + V+V + GG L++ ++ G A G++ Sbjct: 222 TGACAVAAVVLRDAGRDTGVVAVDVPGGRLVVT-QTAQACWLAGPAVLVATGEV 274 >gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius CECT 5713] Length = 325 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 37/322 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDA 58 ++ K+ G GN ++D + +T + + L+ D +T D ++ + Sbjct: 1 MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQAG-HE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ + V Sbjct: 60 GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV 119 Query: 119 DMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173 P D ++ P++ + +++ + L F V++ NPH I FV+ Sbjct: 120 ----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFVDH 175 Query: 174 D-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L +L + L +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKL--- 279 AS + LH + ++V GG + + +N +M+ G A + + + Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKVNISQA 295 Query: 280 -----DIKTGKWIKKNEDDEAY 296 + W + + AY Sbjct: 296 DAINGNFDNFTW-NETGEQAAY 316 >gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3] gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3] Length = 302 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 123/297 (41%), Gaps = 45/297 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQ 56 + F K G GN +++ ++T+D + AL D ++ + Sbjct: 18 LRFVKGHGTGNDFVLLPDPDGDLDLTADLVRALCDRRTGIGGDGVLRVVLCAAVPEAAGL 77 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114 F+ N DGS + CGNG R R+L + F T G+ + + DG Sbjct: 78 AGRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDG 137 Query: 115 SISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P I+D P+ + VSMGNPHA+ F D Sbjct: 138 DVTVDMGPPRIIDGPGAPVTVADRDF----------------TATAVSMGNPHAVCFAGD 181 Query: 174 DLYHYDLASFGNL-LAKHPMF-----SEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+A L L + P F +GVN+ I V + +R +ERGVG TA+CG+ Sbjct: 182 ----LDVAGLRRLDLTRPPSFSPVDFPDGVNVEIV-VDRPAGVAMRVFERGVGETASCGT 236 Query: 228 AACASVVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ACA VA V V + GGGL++ W V + G A+ ++G L Sbjct: 237 GACAVAVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQPE-TVLLRGPAELVFDGVL 292 >gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56'] gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56'] Length = 265 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 43/292 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M+ ++V F K EG+GN ++++ +T++A L D +++I Q Sbjct: 1 MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQ--- 53 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS--- 115 +++ N DGS + CGNG+RCV +L SR +K+ T T G + R G Sbjct: 54 --PRMQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG + L+ A + V +GNPHA+ F Sbjct: 112 VLVGMGRARMGETLVVTALGAE-----------------HRFACVDVGNPHAVTFDPYTE 154 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----LDLRTWERGVGLTAACGSAAC 230 D G ++A P EG+N+ RV E +D+ WERGVG T ACG+ AC Sbjct: 155 DAID--ELGPIVATTPA--EGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGAC 210 Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 A A+ + + V + GG L I + + M G A++ + G++ Sbjct: 211 AVAAAACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEV 262 >gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 325 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 37/322 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDA 58 ++ K+ G GN ++D + +T + + L+ D +T D ++ + Sbjct: 1 MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQAG-HE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+IN DGSE CGNG+R V R+L+ + F +T+ L K+ + V Sbjct: 60 GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV 119 Query: 119 DMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173 P D ++ P++ + +++ + L F V++ NPH I FV+ Sbjct: 120 ----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFVDH 175 Query: 174 D-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L +L + L +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKL--- 279 AS + LH + ++V GG + + +N +M+ G A + + + Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKVNISQA 295 Query: 280 -----DIKTGKWIKKNEDDEAY 296 + W + + AY Sbjct: 296 DAINGNFDNFTW-NETGEQAAY 316 >gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1] Length = 282 Score = 209 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 25/286 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57 + + V F K+ G GN + ID R ++ D ++ D ++ + Q Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115 D N DGS + CGN RC F T GI+ A + G Sbjct: 64 HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAVADVEAGY 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ P D + V+ G PHA+ F D + Sbjct: 124 AKVELTRPR------------DLAAGTTLELEGTPFTV----HFVNTGVPHAVVF-SDSV 166 Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 DL G L HP F G N + A + ++ LRT+ERGV T ACG+ A A+ Sbjct: 167 DGLDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATA 226 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L T+ +V V+ GG +L ++ +F++G+A + + G++ Sbjct: 227 FIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272 >gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] Length = 286 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 12/270 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D +T + + + D I+ + + N Sbjct: 7 KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGIL--EGPVLDGEQISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGIL-VAKENRDGS-ISVDMGEPI 124 DGS Q GNG+R ++L +++K FT + G + N +G+ + MG+ Sbjct: 65 PDGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + + D++ + G Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYPVT----CLSIGNPHCVILM-DEISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + V+M GG L +E V MTG+ Sbjct: 240 KMFVQMPGGTLELEIDGEGVVHMTGDVGYV 269 >gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] Length = 273 Score = 208 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 115/280 (41%), Gaps = 15/280 (5%) Query: 5 MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ K G GN ++ D R + +I + D +L+ Sbjct: 1 MIPVTKYHGCGNDFIITDWERVMNCDIEDFVVKVCDRHTGIGADGCILVKQHP-----LE 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDGSISVD 119 + N DGS CGNG+RC ++ + + ET+ G + +D Sbjct: 56 MVFYNGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRID 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG D K I + + + + +G + + M H + FV D + +D Sbjct: 116 MGTWDDDPKSIQVEGQSEPIMDYKLTVGDTSVSV----YSFFMSTVHTVVFVS-DAFAFD 170 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + HP++ E N++ + + +L + T+ERGVG+T ACG+ ACA+ + Sbjct: 171 YSDIGKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEK 230 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V + G L IE D HV M G A++ +G+ Sbjct: 231 KGCASKLRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270 >gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] Length = 261 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 40/291 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K + GN ++I+ ++ I + + D I+LI + D Sbjct: 1 MKIIFLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +++ N DG E CGNG RC V F + + F+TI G A ++ +S++M Sbjct: 59 YMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTIDGSHYASITKN-IVSLNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 K I L + K ++ G+PH I F+++ + ++ Sbjct: 118 -------KNIELVEVYKK------------------HICINTGSPHHILFIDNK-NYINV 151 Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + +GVN++ +V L++RT+ERGV T +CG+ AS +A+ Sbjct: 152 YNKGIKIRFNQKYIKKGVNVNFVKVK-KHILNVRTYERGVENETLSCGTGVTASAIAAYN 210 Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKTG 284 + K + V+ LGG L +++ +F+ GE ++G L + Sbjct: 211 IKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLPAA 261 >gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a] gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a] Length = 368 Score = 208 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 123/336 (36%), Gaps = 75/336 (22%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH--------DFQ 56 + F K G GN +V+ +T+D + AL D ++ + Sbjct: 7 LRFVKGHGTGNDFVVLPDPDGDLELTADLVRALCDRRTGVGADGVLRVVLSAAVPEVAPL 66 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG R R+L + FT T G+ + + G Sbjct: 67 AGAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAG 126 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 ++VDMG P L + +RD +G VSMGNPHA+ F +D Sbjct: 127 DVTVDMGPPRLSAGA---GSAVTVAERDFTAVG------------VSMGNPHAVCFADDL 171 Query: 174 DLYHY-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA---- 228 D+ DL F +GVN+ I V + +R +ERGVG TA+CG+ Sbjct: 172 DVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGTGACAV 230 Query: 229 -------------------------------ACA----SVVASGCLHKTNRA------VS 247 A A S V+ V Sbjct: 231 AVAWAARQGLRPTPGSALASEPAPDAEPGQSAAAGVRPSAVSGVRHGAGAAPSAVEVEVE 290 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V + GGGL++ W V + G A+ ++G L + Sbjct: 291 VDVPGGGLVVVWRP-GTVLLRGPAELVYDGVLRPAS 325 >gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] Length = 355 Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 69/347 (19%) Query: 3 SSMVDFAKMEGIGNKILVID------MRGCHDNITSDAI-----NALSTDDNTHFDQIML 51 S ++F KM G GN +V + + G +T + I FDQ+++ Sbjct: 10 SFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIV 69 Query: 52 IHD-FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-------------KRKSF 97 I D D + + +INCDG+ CGNG+RC +++ Sbjct: 70 IDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDI 129 Query: 98 --TFETIRGILVA----------KENRDGSISVDMGEPILDWKLIPLARSFDKMDRD--- 142 ET GI+ K+N + V+MG P + + + R K+ + Sbjct: 130 EQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSP 189 Query: 143 ------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY---------------HYDLA 181 IG L +V GN + F++ ++ D Sbjct: 190 IESYMYTIDIGLPYCSKLECVYVTVGGNQ-CVVFIDRNIELGYLDSSYGDHTKFSTIDFK 248 Query: 182 SFGNLLAKH-PMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVVAS 236 +++ + F + N+ + + L+ R ERG G T ACG+ AC ++S Sbjct: 249 EISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISS 308 Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 N ++V+M GG LLI+W+ NN +F TG A ++ ++ I Sbjct: 309 ILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI 355 >gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c] gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c] Length = 340 Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 64/332 (19%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 V F K +G GN +++ +T + AL D ++ + Sbjct: 22 VRFVKGQGTGNDFVIVPDPDGELELTPRLVRALCDRRFGIGADGVLRVVLTAAEPSAAGL 81 Query: 53 ---------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 F+ N DGS + CGNG+R R+L Sbjct: 82 GNSWAADLPDGRRAPAESRTARPAGAGGARWFMDYRNADGSIAEMCGNGLRVFGRYLVDA 141 Query: 92 MKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 ++ T G+ +A +G ++V+MG P + + +R I Sbjct: 142 GYERAGLIPVATRAGVRLADVPNEGDVTVEMGPPTIGP-----------LGAERVSIAGR 190 Query: 150 NHLFLRNPFVVSMGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205 VSMGNPHA+ F +D DL DL + + G N+ I + Sbjct: 191 TFEATN----VSMGNPHAVCFADDLAEADLNALDLTRLPQV--SPAAYPTGANVEIV-IG 243 Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNN 263 + +++ +R +ERGVG T +CG+ ACA VA+ + V + GG + + W D++ Sbjct: 244 APDAVRMRVYERGVGETLSCGTGACAVAVAAATRAGRGPGTVIPVDVPGGRVTVLW-DSD 302 Query: 264 HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 V + G A EG + W+ + A Sbjct: 303 QVRLRGPAVLVSEG---LLRSDWLAAAQAGSA 331 >gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 280 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 33/292 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M+ FAK G GN ++I+ + D ++ A + D ++++ + + D Sbjct: 1 MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDM 120 ++R+ N DGSE + CGNG RC+ R+ + + TFET G + A N ++DM Sbjct: 59 FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPP-WATIDM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVED--DLYH 177 GE +D G +N P+V +G PH + F D+ Sbjct: 118 GE----------------IDVSNLKEGKINAFGKEIPYVAFYVGVPHCVLFFPGFRDIPR 161 Query: 178 YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 L S + + +F EG N++ A + + + T+ERGV T +CG+ + A +A Sbjct: 162 DSLLSLARHIRRKGAIFDEGANVNFAE-RNKDCIGAMTYERGVEDFTLSCGTGSIACCLA 220 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VF---MTGEAKKEWEGKLDIKT 283 S L + A+ VK GG + + VF ++G+A EG + + Sbjct: 221 SHLLFGSPLAMKVKNPGGVNKVALRLTSEKVFEASLSGKALIVAEGLITEEA 272 >gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] Length = 256 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 40/285 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G GN ++ID R N T + I+ L D ++LI + D ++D Sbjct: 3 LNFYKYQGCGNDFVMIDNRSQTFNKDTINTISKLCDRHFGIGADGVILIEN--DLALDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS+ CGNG RC V F + + F G +K ++ +S+ M Sbjct: 61 MVYYNPDGSQ-TFCGNGGRCAVSFAHFLGIIKNETNFTAFDGTHFSKI-KNNIVSLKM-- 116 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +D I L ++ G PH + V DL ++D+ Sbjct: 117 --IDVSDI---------------------QILEQAVFLNTGTPHHVQVVT-DLSNFDVFR 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + S G N++ + + +RT+E+GV T ACG+ A +A K Sbjct: 153 EGEKIRY-TYKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMHKTKK 211 Query: 242 TNRA-VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 TN +++ + GG L + + + ++F+ G A ++GK++I Sbjct: 212 TNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256 >gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 283 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 105/293 (35%), Gaps = 38/293 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI--------HDFQ 56 ++F K G GN +++ +T + AL D ++ + Q Sbjct: 1 MEFTKGHGTGNDFVILPDPDGALELTPGLVAALCDRRRGLGADGVLRVVRAAKHPEGAGQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG R VR+L + + + T G++ A Sbjct: 61 AGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETGLAVPEGAALSVATRAGVVRALVAG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +ISV++ P + V +GNPH + + Sbjct: 121 E-AISVEVRRPRV-----------------YATSTAALGGLTLAGSAVDVGNPHLVCALP 162 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227 L L +F GVN+ + +R +ERG T +CG+ Sbjct: 163 AGLELGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYERGSAETLSCGT 222 Query: 228 AACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ACA + VA + V+V + GG L + D+ ++ G A G L Sbjct: 223 GACAVAAVALHDAGRNTGTVAVDLPGGRLTVTMTDD-SCWLAGPALLVASGTL 274 >gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] Length = 264 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 41/290 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R N I + D +M + D D Sbjct: 3 IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQD--KEGYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121 + N DG CGNG RC+V F + F+ + G AK + +G +S+ M Sbjct: 61 MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKISAEGDWVSLQM- 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +D I +V++ G+PH + VE DL H ++ Sbjct: 120 ---IDVAQINRDGE---------------------AYVLNTGSPHYVKLVE-DLKHKNVY 154 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G+ + + + +G+N++ + +RT+ERGV T ACG+ A +A Sbjct: 155 QEGHAIRNNATYRKKGININFVEPMAEGYF-VRTFERGVEDETYACGTGVTAVALAMAQH 213 Query: 240 HKTNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 ++ + ++ VK+LGG L I + + ++F+ G AK +EGK+ T Sbjct: 214 NQQSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKIGPLT 263 >gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21] gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21] Length = 263 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 42/285 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + T+ D +ML+ Q A D Sbjct: 1 MKFFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR-DGSISVDMG 121 + N DG+ CGNG RC+V F + KS F + G A N +S+ M Sbjct: 59 MVYYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATINDTADWVSLKM- 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +D + + FV++ G+PH + V DL + D+ Sbjct: 118 -----------------IDVEHIEKDGDD-------FVLNTGSPHYVKEVV-DLKNLDVF 152 Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS--G 237 + G + + + + G+N++ + +RT+ERGV T ACG+ A +A Sbjct: 153 AAGRAIRYNATYKQAGINVNFVEAVNDGY-QVRTYERGVEDETLACGTGVTAVALAMAWH 211 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEG 277 + +K +GG L I + + +++ G AK +EG Sbjct: 212 HNRLGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256 >gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] Length = 261 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 41/287 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID +I + + + D +M + D D Sbjct: 3 IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFLTSHPD--YDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG-SISVDMG 121 + N DG CGNG RC+V F + K F + G AK + +G + + M Sbjct: 61 MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEGNWVELQM- 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 D + RD +V++ G+PH + +E+ L YD+ Sbjct: 120 ------------IDIDTIGRD------------GEAYVLNTGSPHYVARMEN-LATYDVY 154 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV--ASG 237 G + + + EG+N++ + L +RT+ERGV T ACG+ A + A Sbjct: 155 HEGKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTAVALSMALH 213 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 + VK+LGG L +E+ N +VF+ G A+K +EG+L+ Sbjct: 214 KQQSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260 >gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 276 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 125/281 (44%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM +GN ++++ +NI+ I LS FDQ++LI F I Sbjct: 1 MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLSDRYTGIGFDQLILIEFFCKKYFYFKI 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGE 122 +I N D SE C NG+RCV FL + G+ ++ I V + Sbjct: 61 KIFNSDSSESFQCINGIRCVFMFLKIKKLIKKNIAFIGNNLGLSKTLMTKNKLICVKIKP 120 Query: 123 PIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K I + ++ ++ I + V +GNPH I + ++ + + + Sbjct: 121 PRFYIEKDILVNPKYNNKEKIILRIFKKK----ITCYFVFVGNPHCII-ISKNIEYNNFS 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 L K+ +F +N+SI + + + L+ +ERG G T +CGSAA A+ + K Sbjct: 176 LLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAIYYKK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMT--GEAKKEWEGKLD 280 N+ + V G L + W + FM+ G A ++GK++ Sbjct: 236 LNKKIKVNFSRGNLYVYWEKIGN-FMSIIGPANHIYDGKIN 275 >gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021] gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021] Length = 268 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 111/288 (38%), Gaps = 32/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56 + F K G N +++ + + + + D ++ + Q Sbjct: 1 MRFVKGHGTENDFVILPDPDGELELPAALVARVCDRRAGIGADGVLRVMRTKLSPEVADQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114 + F+ N DG + CGNG+R R+L F T G+ + G Sbjct: 61 AGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAETG 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P L + R R + + LR V MGNPH + D Sbjct: 121 DVTVDMGTPRL-------------LGRSRTTVAGQEYEGLR----VDMGNPHLACAIGDP 163 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL+ F GVN+ + + +R +ERG G T +CG+ A AS V Sbjct: 164 VAQLDLSHQPAF--DPEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVASAV 221 Query: 235 ASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ L +T +V++LGG + + + ++ G A G L + Sbjct: 222 AAAHLAGETTGTWAVEVLGGTVTVTLDERTS-YLAGPAVLVASGDLSL 268 >gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] Length = 259 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 40/288 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K + GN ++I+ ++ I + + D I+LI + D Sbjct: 1 MKIIFLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +++ N DG E CGNG RC V F + + F+TI G A ++ +S++M Sbjct: 59 YMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTIDGSHYASITKN-IVSLNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 K I L + K ++ G+PH I F+++ + ++ Sbjct: 118 -------KNIELVEVYKK------------------HICINTGSPHHILFIDNK-NYINV 151 Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G + +GVN++ +V L++RT+ERGV T +CG+ AS +A+ Sbjct: 152 YNQGIKIRFNQKYIKKGVNVNFVKVK-KHILNVRTYERGVENETLSCGTGVTASAIAAYN 210 Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDI 281 + K + V+ LGG L +++ +F+ GE ++G L + Sbjct: 211 IKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKL 258 >gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 291 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 104/292 (35%), Gaps = 32/292 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 + + F K G N L++ +T + AL D ++L+ Sbjct: 2 TRTLTFTKGHGTENDFLLVPDPDAELGLTPADVIALCDRQAGIGADGLLLVTRSAAHPDA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE- 110 + F+ N DG+ Q CGNG+R R+L R + + T G+ Sbjct: 62 ADMADEAEWFMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTVPIATRSGVRQVHIP 121 Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + DG +V MG P I + V +GNPHA+ Sbjct: 122 GGDPDGHPTVAMGRPAFPGPD---------------GIKVTANGRTWPALHVDVGNPHAV 166 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V+D DL + + + EGV + L LR ERG G T +CG+ Sbjct: 167 VQVDDLADPGDLRT-PPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTG 225 Query: 229 ACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A A+V A +V + GG L ++ + + ++G A G Sbjct: 226 AVAAVAAVLHREPGVPTGRYTVDVAGGSLAVDVAPDGDMHLSGPAVLVATGT 277 >gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] Length = 283 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 43/296 (14%) Query: 10 KMEGIGNKILVI-DMRGC-----HDNITSDAINALSTDD-NTHFDQIMLI--------HD 54 K G N +++ D+ G D + + AL D I+ + D Sbjct: 7 KGHGTENDFVLLPDLDGSVHGSLSDEEMAARVRALCDRRAGIGGDGILRVIRTAAYTGAD 66 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRD 113 + + F+ N DG+ + CGNG R +L + + TF T G + D Sbjct: 67 RPASDAEWFMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD 126 Query: 114 GSISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + D+G P +L + +A F + V MGNPHA VE Sbjct: 127 -VWTADLGSPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVE 167 Query: 173 DDLYHYDLAS-FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 H + + + + ++ GVN+ + L +R +ERG G T +CG+ ACA Sbjct: 168 SIDPHGPVGDLYDSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACA 227 Query: 232 SVVASGCLHKT------NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +VA+ + V + GG L + W ++ V +TG A EG + Sbjct: 228 VMVAAAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283 >gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] Length = 272 Score = 206 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 34/289 (11%) Query: 6 VDFA--KMEGIGNKILVI-DMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS- 59 + F+ K G N +++ D G H ++ + AL D ++ + Sbjct: 1 MTFSWLKGHGTENDFVLLPDHDGTVHGDLDPTFVAALCHRRRGIGADGVLRVVRSAATGL 60 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD 113 + F+ N DGS + CGNG+R L F T G + D Sbjct: 61 PSAAEWFMDYRNADGSTSEMCGNGIRVFALHLVQEGLVDPSGPFLVGTRDGDKQITVDGD 120 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG + R + +H + V GNPHA+ FV+D Sbjct: 121 -LVTVDMGVAEV---------------RGTTKVTVDDH--VWEAQDVRTGNPHAVAFVDD 162 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L + ++ +GVN+ R + + +R ERG G T +CG+ ACA+ Sbjct: 163 LAEAGALTAQPEYDEV--VYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAA 220 Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA G H V + GG + + + V + G A+ G+++ Sbjct: 221 VAHGLDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269 >gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] Length = 281 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 103/279 (36%), Gaps = 23/279 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G N +++ R ++T + + AL D +I DA F+ Sbjct: 16 FLKGHGTENDFVLLPDRADELDLTENRVRALC-DRRAGLGGDGVIRVVPDADGGFFMDYR 74 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS Q CGNG R R++ F T G VA G +S++MG L Sbjct: 75 NADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPATL 134 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 R IG + V +GNPH + D + Sbjct: 135 GVAS-------------RAAIGDAAFAGI----AVDVGNPHLVCLDIGDRSTLAALDLSH 177 Query: 186 LLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKTN 243 P +F +GVN+ + +R ERGVG T +CG+ + +T Sbjct: 178 APEFDPQVFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGRTQ 237 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG + ++ +TG A +G+++ + Sbjct: 238 GRVLVNVPGGQVTVDIAPGTS-MLTGPAVIVAQGRVEPQ 275 >gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 334 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + L D D ++++ Sbjct: 3 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 59 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 60 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 119 Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 D + SV++ D + + + + D + ++ + F V++ NP Sbjct: 120 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 175 Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H I FV+ D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T Sbjct: 176 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 235 Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274 ACG+A AS + LH+ N+ + V GG + H + +M G A Sbjct: 236 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 295 >gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] Length = 332 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + L D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 D + SV++ D + + + + D + ++ + F V++ NP Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 173 Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H I FV+ D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233 Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274 ACG+A AS + LH+ N+ + V GG + H + +M G A Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] Length = 332 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + L D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 D + SV++ D + + + + D + ++ + F V++ NP Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 173 Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H I FV+ D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233 Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274 ACG+A AS + LH+ N+ + V GG + H + +M G A Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] Length = 300 Score = 205 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 107/301 (35%), Gaps = 45/301 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-------- 57 K G N +++ + + L+ D ++ + + Sbjct: 5 QLVKGHGTANDFVLLHDPNGEHELDPARVRELADRRTGIGGDGVIRVIRSEALGEEAGDV 64 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENR 112 A + F+ N DGS + CGNG+R +L ++ +SF T GI Sbjct: 65 AHGAGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHVTVIP 124 Query: 113 DG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 D VDMG+ W+L +FD + R V MGNPH Sbjct: 125 DPLGGDTPWYKVDMGK----WQLPGGGEAFDAT------VETTGVRVARPGLTVDMGNPH 174 Query: 167 AIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGV 219 + + ++L L + P G N+ + +L +R ERGV Sbjct: 175 TVVALAHAEELQAAKLHE-PPHVEPTP--PAGTNVEYIVIEPDNDPTTGTLRMRVHERGV 231 Query: 220 GLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 G T ACG+ ACAS +A+ +V GG + IE V ++G A + Sbjct: 232 GETYACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIEIT-GETVALSGPAVITY 290 Query: 276 E 276 E Sbjct: 291 E 291 >gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] Length = 263 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 38/289 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + F K + GN ++I+ ++ I L + D ++LI ++ D Sbjct: 1 MKIFFFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIKN--YDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +++ N DG E CGNG RC V F + +K+ F+TI G A N++ +S++M Sbjct: 59 YMKYYNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINKN-IVSINM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + ++ G+PH I F++ Sbjct: 118 TNVEF-----------------------LTVEVDSDSIFLNTGSPHHIIFIKKIENINRN 154 Query: 181 ASF-GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G L + GVN++ ++ + +RT+ERGV T +CG+ ASV+A+ Sbjct: 155 INIKGRKLQSSKKYLKTGVNVNFVQI-NKHIFYVRTYERGVENETLSCGTGVTASVIAAY 213 Query: 238 CLHKTNRAVS-VKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 K VK GG L +++ +F+ GE ++G + I Sbjct: 214 HKKKIFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262 >gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] Length = 275 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 28/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----HDFQDASV 60 ++F K G N +++ +T + AL D ++ + + ++ Sbjct: 4 IEFLKGHGTQNDFVLLPDPAGRLELTEARVAALCDRRRGLGADGVLRVVRAAELGEPSAG 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG+R R+L F T G + D S++V Sbjct: 64 EWFMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG + + + + V +GNPH + ++DD+ Sbjct: 124 HMGPATITGTSVTVVAGRP-----------------FSGVAVDVGNPHLVSLLDDDVAGL 166 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + H +F GVNL +L +R ERGVG T ACG+ A+V A+ Sbjct: 167 DLREQPDF--DHDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224 Query: 239 LHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L T+ +V + GG + + ++G A+ G+LD Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGAS-TLSGPAEIVARGELD 266 >gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 301 Score = 204 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 114/289 (39%), Gaps = 22/289 (7%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIML-----IHD------ 54 DF K E +GN LVID + T+D + + D ++ + Sbjct: 4 DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63 Query: 55 -FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111 +RI N DG+ GNG+R R+L FT T G + Sbjct: 64 TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVRVL 123 Query: 112 R--DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G I + +G + + M R+ + N +S GNPH + Sbjct: 124 DRASGLIRLALGPMSSSSRDVGATGHDRPMLRETLRVDGENIEIT----CLSDGNPHCVV 179 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V +++ + G +A HP F VN+ +V ++ WERG G T A GS A Sbjct: 180 -VRENVTPELAHALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWERGAGYTLASGSGA 238 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 CA+ A+ L T V+V+M GG L +E + V +TG A + G+ Sbjct: 239 CAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQVATGR 287 >gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304] gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304] Length = 342 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 34/298 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57 M+ K++G GN ++D + + ++ L+ T D I+ + Sbjct: 1 MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAVTASPT 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRG-ILVAKENRDGS 115 S I +IN DGS+ CGNG+R V R+L + +TI G V+ N + Sbjct: 61 PS----IHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116 Query: 116 IS----VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNP 165 + G P ++ P++ F + R+R V L F +S+ NP Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLPFTNLGRNRLINCSVPELLPDLRFTALSVPNP 176 Query: 166 HAIFFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 H + F+ +D + L+S GN L + +P F GVN++ A + +L +RT+ERGVGLT Sbjct: 177 HVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGVGLTN 236 Query: 224 ACGSAACASVVASGC----LHKTNRAVSVKMLGGGL--LIEWHDNNHVF---MTGEAK 272 ACG+ A+ + + + N+ ++V GG + + + + + + G A Sbjct: 237 ACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVHYQEEEGTYTINLIGNAT 294 >gi|189502193|ref|YP_001957910.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus 5a2] gi|189497634|gb|ACE06181.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus 5a2] Length = 258 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 42/289 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F K G GN +++D + + I +L D + + + S Sbjct: 1 MTIPFYKYHGTGNDFILVDNITNPNVTCPHDPELIKSLCHRKFGIGADGFIFLE--KSGS 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISV 118 D + N D S+ CGNG RC V + F I G A+ D + + Sbjct: 59 YDFEMIYYNSDASQS-LCGNGSRCAVHLASYLGIINNVADFLAIDGPHQARIQ-DNLVYL 116 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + D I + + N + ++ G+PH + V++ + Sbjct: 117 QLH----DVSTIQM---------------------MGNDYFLNTGSPHYVRLVQNLVET- 150 Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ G + F G N++ ++ + + + T+ERGV T +CG+ A+ + + Sbjct: 151 DVIELGKSINASQSFQNTGTNVNFVQLEANNQISVCTYERGVNDETLSCGTGVVAAALVA 210 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281 T V V GG L I + +N F + G A + ++GK+ I Sbjct: 211 SQKGYT-SPVYVVTKGGELQISFCKHNTAFSNICLVGPATQVFQGKITI 258 >gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] Length = 267 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 40/287 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN ++ID R T + + D +ML+ D + Sbjct: 3 IKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123 R N DG E CGNG RC+V + ++ F G + G + V M Sbjct: 61 RYFNSDGREASLCGNGSRCIVAYAHRLGLFLQTTRFLAADGEHQGEITLQG-VRVKMN-- 117 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D R + P + F + G+PH + V D D+ + Sbjct: 118 ----------------DVSRITVTP-------DYFFLDTGSPHYVKVVADAFQT-DVVTA 153 Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC-ASVVASGCLH 240 G ++ P F G N++ T + + T+ERGV T ACG+ A++ A+ H Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPT-PACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212 Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLDIK 282 + +++ GG L + + +NH +++ G A+ + G+++ Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIETP 259 >gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7] gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7] Length = 326 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 26/289 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQDA 58 ++ K+ G N+ ++D +T + + TD D ++L+ + + Sbjct: 3 LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113 + +R+IN DGSE CGNG+R V R+L+ + + ET+ L K+ + Sbjct: 63 TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + +P + +D++ + P H V++ NPH I FV+ Sbjct: 123 QTFQVEISPVSFNVAKLPFNWKDETFIDQELPELAPGLHFST-----VAVPNPHLISFVD 177 Query: 173 DD-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L L +P F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 178 HKTIKSSLLKELATYLNGANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFTNACGTAMA 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273 AS + L + + V GG + + +N + +M G A Sbjct: 238 ASSLMYVLLKDGRLEEKIQVTNPGGMVQTIVHQKENGNYWMDLIGNATF 286 >gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] Length = 357 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 80/353 (22%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIML 51 S ++F KM+G GN +V + + I+ DQ+++ Sbjct: 11 SYRINFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGFTKKLSHRKLGIGCDQLII 70 Query: 52 IHD-FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRK 95 I D D + + +INCDG+ CGNG+RC +++ + Sbjct: 71 IDDNPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDKI 130 Query: 96 SFTFETIRGILVA----------KENRDGSISVDMGE--------------PILDWKLIP 131 ET GI+ KE + V+MG P K P Sbjct: 131 EQIIETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQSP 190 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-------------- 177 L +D + + VS+G + F++ ++ Sbjct: 191 LESYMYTIDI------GLPYCSKLECVYVSVGVNQCVVFIDRNIELGYLDSSYGDFSKFS 244 Query: 178 -YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACA 231 ++ +++ + F + N+ + + L+ R ERG G T ACG+ AC Sbjct: 245 MINIQEISDIIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGACG 304 Query: 232 SVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VAS N V+M GG LLI+W NN +F TG A ++ ++ I Sbjct: 305 VAVASILKGYCNENTESIVEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQILI 357 >gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046] Length = 320 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 22/292 (7%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + K+ G GN + + N + A ++ D ++++ A DA + Sbjct: 3 IQLTKVHGSGNTFYLYEALYDEQFNFVNIAKQLCHHSNDGGADGLLIVLPSSVA--DAKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GSISVD 119 R+IN DGSE CGNG+RCV R++ ++ ET+ L K + SV+ Sbjct: 61 RVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVKREASIFEQLPTYSVE 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-----EDD 174 + + +P+ + R + +S+ NPH I V E+ Sbjct: 121 ISPISFELVSLPMKVENRQQLRHEIIPAFSMDI---PFTAISVPNPHLIGIVDHKYMENT 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L+ LA++ L +++ +GVN+S + S + + +RT+ERGVG T ACG+A AS + Sbjct: 178 LHQEQLAAY--LNSENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGTAMTASAL 235 Query: 235 ASGCLHK-TNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + TN V+V GG + E D+ + + G A + + D++ Sbjct: 236 IASIEGFITNSKVTVYNPGGFVQCEVKNCGDSWELALIGNATVLGDYEYDLQ 287 >gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 332 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 33/300 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + L D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 D + SV++ D + + + + D + ++ + F V++ N Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNQ 173 Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 H I FV+ D L +L G + K+ +F +GVN+S V S+ +RT+ERGVG T Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233 Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274 ACG+A AS + LH+ N+ + V GG + H + +M G A Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 290 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 14/283 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 V F K +GN LV D + + I + D I+ Sbjct: 2 KKVTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILA--GPYLDQEKM 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA-KENRDGS-ISV 118 +++I+N DGSEV GNGM ++L +++ S ++ TI G N +G+ + + Sbjct: 60 YVKILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGTRVKI 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P IP+ +M G + ++ +S+GNPH + ++ ++ Sbjct: 120 SMGRPSFWSDEIPVTGERREMVNQTMMFGKIPYVTT----CLSLGNPHCVIWMS-EISKD 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G F E VN + V ++ + +ERG G T A GS ACA+ A+ Sbjct: 175 QVCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALR 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L + + V M GG L +E ++ V+M GE G + + Sbjct: 235 LGLADNNMYVHMPGGILEVEIKEDGTVYMVGEVGHV--GTITL 275 >gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2] gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2] Length = 273 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 112/280 (40%), Gaps = 15/280 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ K G GN ++ D D + D +L+ Sbjct: 1 MIPVTKYHGCGNDFIITDWELLKHKNIEDFVKHVCDRHTGIGADGCILVKQKP-----LE 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKE--NRDGSISVD 119 + N DGS CGNG+RC ++ + + ET+ G+ + +D Sbjct: 56 MVFYNADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRID 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG + K I + + + +G + + M H + FV D + +D Sbjct: 116 MGTWDDEPKSIQVDALKEPVMGYELPVGDKS----VTVYSFFMSTVHTVVFVS-DAFAFD 170 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G+ + H ++ E N++ ++ +L + T+ERGVG+T ACG+ ACA+ + Sbjct: 171 YNEIGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAHEK 230 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + G L I+ D HV M G A++ +G++ Sbjct: 231 KGCAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270 >gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231] gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002] gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19] Length = 297 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 108/302 (35%), Gaps = 48/302 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH----------- 53 + FAK G N ++I+ +T I+A+ D ++ + Sbjct: 11 ISFAKGHGTENDFVIIEDLDAKLPLTPQLISAICDRRAGVGADGVLRVAHVGSLLASGVL 70 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 D F+ N DGS + CGNG R +L SR + F+ T G Sbjct: 71 TQAPEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTV 130 Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + D +SVDMG + IG ++ V MGN Sbjct: 131 SVHAFSATDADVSVDMGPA-------------EVTGVSTCRIGTASYA----GMGVDMGN 173 Query: 165 PHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGV 219 PH V L DL + F EGVN+ + + +R +ERGV Sbjct: 174 PHLACVVPGLTPQALAEVDLVQ---PVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGV 230 Query: 220 GLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ A + V V + GG + + + V + G +K G+ Sbjct: 231 GETRSCGTGTVAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQ 289 Query: 279 LD 280 LD Sbjct: 290 LD 291 >gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] Length = 334 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 26/291 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57 M K+ G N ++D + + L+ D ++++ Sbjct: 1 MAQLLKVHGSQNSFFILDQTKLAQPLADGELRQLAQGLTDSHNGLLGGADGLLVVDRPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ + Sbjct: 61 PGAVAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQATE---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 + G ++ P+ A FD + DR PV L +++ NPH I FV Sbjct: 117 LAPGVLAFAVEISPVRFDKTALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFV 176 Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G L +P FS+GVN++ A++ + L +RT+ERGVG T ACG+ Sbjct: 177 SQQTIEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273 A+ +A LH + ++V GG + I + H + + G A Sbjct: 237 SATSLAFALLHPASAAFDEPITVYNPGGMVKTIAHFTHQHYWIELIGNATF 287 >gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] Length = 287 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 102/284 (35%), Gaps = 38/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59 V F K G GN +++ ++T + + A+ D ++ ++ + Sbjct: 9 VKFTKGHGTGNDFVILPDPDGALDLTPELVAAICDRRRGLGGDGVLRVVRAAKHPDGAAL 68 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT----FETIRGILVAKENR 112 + F+ N DGS + CGNG R VRFL T G++ A+ + Sbjct: 69 AGDAEWFMDYWNSDGSFAEMCGNGARVFVRFLLDSGLATPIHGVLPVATRAGLVRARLDG 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + I+V+M P L V +GNPH + + Sbjct: 129 ED-IAVEMRRPRL-----------------YATSTAALGALTLPGTAVDVGNPHLVCPLP 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227 L L +F GVN+ + +R +ERG T +CG+ Sbjct: 171 AGLELTGLDLTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGT 230 Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 ACA + + + ++V + GG L + +N +++G Sbjct: 231 GACAVAAVALRDIARETGTIAVDVPGGRLTVTLT-DNSCWLSGP 273 >gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] Length = 326 Score = 202 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] Length = 270 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 32/286 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56 + F K G N ++I ++ + + A+ D ++ + Q Sbjct: 1 MRFVKGHGTENDFVIIPDPEGRLELSPETVAAICDRRTGIGGDGVLRVVPTARCPEVADQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R R+L F T G+ + +G Sbjct: 61 AGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAEG 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P + + R + + L VSMGNPH +ED Sbjct: 121 DVTVDMGRPRV-------------LGESRTAVDGREYQGLG----VSMGNPHLACLIEDP 163 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL+ +F +GVN+ + +T + +R +ERG G T +CG+ A A+ V Sbjct: 164 VAGLDLSR--PPRFDAAVFPDGVNVELFNLTGDHRVTMRVYERGSGETRSCGTGAVATAV 221 Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A+ +V++ GG + + ++TG A G++ Sbjct: 222 AAARAVGEETGTWAVRVPGGVVTVTLDATTS-WLTGPAVLVASGEI 266 >gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG] gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG] Length = 326 Score = 201 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341] gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62] Length = 326 Score = 201 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] Length = 326 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] Length = 269 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 107/281 (38%), Gaps = 25/281 (8%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K +G GN L+ D D +++ + + N Sbjct: 5 KYQGCGNDFLIADGSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP-----LSMELWNQ 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDMGEPI 124 DG+ CGNG+RC V + +S+ T G+ V+ G P Sbjct: 60 DGTRAGMCGNGLRCFVHHAYRKGWIQADRSYRIGTGDGLRSVWICSTEPFICRVEAGIPD 119 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNPHAIFFVEDDLYHYDLAS 182 D K +M G ++ FL S +G PH + F D A Sbjct: 120 FDAK---------RMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTDP--EVVSAE 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + +HP F EG N+ AR+ L +RTWERGVG T ACG+ ACAS VA+ Sbjct: 169 QARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGLC 228 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V+ GG L +E + +TG + + GK ++K Sbjct: 229 PLPCKVRCPGGLLDVEQAPDKQCLLTGPS--VYIGKAEVKA 267 >gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 273 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 30/290 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 S V+F K++G GN L +D ++ A+ A + D ++++ + A Sbjct: 2 SHWVEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA 61 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSIS 117 +RI N DGSE CGNG RC L F T G + A +RD ++S Sbjct: 62 ---YRMRIFNADGSEADMCGNGARCFAMMLRWLGLEDPEMEFLTNVGPVRAHVHRDSTVS 118 Query: 118 VDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175 + MG P + L ++ +++ + +++ +G PH + + + DL Sbjct: 119 LHMGFNPFGEGALFRVSERVGEVEAEMWYL--------------HVGVPHLVLWADRWDL 164 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 S G P F G N++ S L T+ERGV LT +CG+ ACA Sbjct: 165 REDGFRSLGARYRHDPRFPRGTNVNFVSP-SEGGLTCITYERGVEDLTLSCGTGACAVAA 223 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281 ++ V V+ GG L+E + + G + G L + Sbjct: 224 SAVMRG-MGSPVRVESPGGYNLVEVGLEDLGARYRLRGPVRVSARGVLYV 272 >gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601] gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601] Length = 329 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 129/316 (40%), Gaps = 29/316 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQDA 58 + F K+ G N +ID +D + + D ++ + +A Sbjct: 3 LTFIKVHGSQNDFFIIDEIDNRIVDWTDVNRRIFTKQICDRSHELGGADGVLFVSASINA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +R+ N D SE CGNG+R V R+L + K ET++ L + S+ Sbjct: 63 GAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQAE----SL 118 Query: 119 DMGEPILDWKLIPLARSFDKM----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173 G P ++ P+ + + + P+ L F V++ NPH I FV+ Sbjct: 119 GFGIPTYQVEISPVLFEPEALPFHYNGKAVFNEPIPELDNELAFSTVAVPNPHLISFVDQ 178 Query: 174 D-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L + + L ++P F +GVN+S + + + + +RT+ERGVG T ACG+A A Sbjct: 179 EQLDSDKQETLASYLNGENPYFPDGVNVSFVKRLAADKIYVRTFERGVGFTNACGTAMSA 238 Query: 232 SVVASGCLHK--TNRAVSVKMLGGGLLI--EWHDNNH--VFMTGEAKKEWEGKLDIKTGK 285 S + L V GG + + E D+ + + G A G + + Sbjct: 239 SSLIKKQLDDDTLEAVTHVYNDGGRVQVTAEQADDGTYKLHLIGNATFTKTGIVRFDEAE 298 Query: 286 WI-----KKNEDDEAY 296 I K+ ++E Y Sbjct: 299 GISVIQAKETGEEENY 314 >gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R] gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R] Length = 277 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 105/293 (35%), Gaps = 35/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------HDFQD 57 + FAK N ++I ++T + + L D I+ + Sbjct: 4 TIPFAKGHATENDFIIIPDEDARLDLTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTV 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 F+ N DGS + CGNG+R +L SR + SF T G+ + Sbjct: 64 DPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHVDILQADQ 123 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + VDMG IP D + + V MGNPH V Sbjct: 124 HSAQVRVDMG--------IPDVTGLSTCDINGQVFAGLG---------VDMGNPHLACVV 166 Query: 172 EDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D+ + F GVN+ I +++ +R WERGVG T +CG+ Sbjct: 167 PGLSASALADMELRAPTFDQ-EFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGT 225 Query: 230 C-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A V V + GG + ++ D+ +TG + G++ I Sbjct: 226 VAAACAALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277 >gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017] gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027] gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467] Length = 326 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S V L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX] gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX] Length = 274 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 36/293 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N +++ ++ + + AL D ++ + Sbjct: 1 MRFAKGHGTENDFVILPDPDGELDLDAATVAALCDRRAGLGADGVLRVVRTKALDEPLTG 60 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110 + F+ N DGS + CGNG+R R+L + +F T G Sbjct: 61 EAATAQRCEWFMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVL 120 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 DG+I+VDMG + R GPV + +S+GNPH Sbjct: 121 EPDGNITVDMGPVRILGP-----------GSARLADGPV------HGTRISVGNPHLACR 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V + DL++ L + F +G N+ + R + L++R +ERG T +CG+ Sbjct: 164 VARPVAEVDLSA--PPLLRAEEFPQGANVEVFREVASGVLEMRVYERGAAETRSCGTGIV 221 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A+ A+ + + +V++ GG + ++ ++G A EG + + Sbjct: 222 AAAAAATPPGE-DARWTVRVPGGECTV-VLESGAARLSGPAVIVAEGDVRLSA 272 >gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043] gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312] gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645] gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630] Length = 326 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000] Length = 326 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEKITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346] Length = 326 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATVTHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141] Length = 326 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ ++ +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] Length = 304 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 117/309 (37%), Gaps = 38/309 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ------ 56 + + F K G N +++D ++T + + AL+ D ++ + Q Sbjct: 2 TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRALTDRRSGVGADGVIRVMRAQLSEEVR 61 Query: 57 -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF----TFETIRGILV 107 D V+ F+ N DGS CGNG+R RFL R + T GI Sbjct: 62 DLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTALGAAYPIATRAGIRT 121 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 ++ D V MG + + I H R VSMGNPH Sbjct: 122 IRKIGD-WYEVGMGPAQF----LDDTAARTTGHDATVTIPMQPHEPARPGISVSMGNPHT 176 Query: 168 IFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWE 216 + + D L DL + P+ G N+ +++ +R +E Sbjct: 177 VVALPDHDTLAELDLTRSPGV---DPVPVHGTNVEFVVPDGVDTAADGTVVGRASMRVYE 233 Query: 217 RGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 RGVG T +CG+ ACA+ A + R ++ + GG + + + V + G A+ Sbjct: 234 RGVGETQSCGTGACAAAAALHRWAGESSPRTWTITVPGGRVQVT-LGTHEVLLAGPAELV 292 Query: 275 WEGKLDIKT 283 +G + I + Sbjct: 293 ADGHITITS 301 >gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76] gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031] gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302] gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342] gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF] Length = 326 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] Length = 326 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKEW--EGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHWIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 282 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 113/289 (39%), Gaps = 25/289 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQD 57 ++ V K+ G GN + ID R + D ++ D ++ + +D Sbjct: 4 KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115 D N DGS + CGN RC F T G++ A+ + G Sbjct: 64 REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ P I V+ G PHA+ F + D Sbjct: 124 AKVELTPPR----------------DLTLGIELDLGEGRDMVHFVNTGVPHAVVF-KRDA 166 Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 D+ + G L +H F G N + A+V ++ LRT+ERGV T ACG+ A A Sbjct: 167 STVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAGA 226 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L V+V+ GG +L + VF++G+A + + G++ ++ Sbjct: 227 FIAHALGLAESTVNVRSSGGEILGISIEGGSVFLSGKAVRVFSGEMFLE 275 >gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B] gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A] Length = 326 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNTGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137] gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012] Length = 326 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.] Length = 256 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 40/284 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN +++D R + I N + D ++LI + D D + Sbjct: 4 NFYKYQGTGNDFIMVDNRAEIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGNG RC V F + + F + G A+ ++ +S+ M Sbjct: 62 IYFNADGSQ-TFCGNGGRCAVAFARYLNIIKNKTNFIAVDGPHFAEI-KNNIVSLKM--- 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +D I + N G H + V D L +Y + Sbjct: 117 -IDVDDIRIQ---------------------ENSVFAYTGTQHHVEMV-DSLDNYPVYEK 153 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 G + + G N++ + + +RT+E+GV G T ACG+ A +A KT Sbjct: 154 GKQIR-ASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIAMHKTKKT 212 Query: 243 NRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + + + GG L + + + N V++ G A ++G++ I Sbjct: 213 TSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256 >gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 271 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 36/291 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + FAK G N +++ ++T +A+ L D ++ + + Sbjct: 1 MRFAKGHGTENDFVILPDPDGELDLTEEAVRLLCDRRAGIGADGVLRVVRTRALGEALAP 60 Query: 58 -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110 + F+ N DGS + CGNG+R R+L ++ F T G + Sbjct: 61 AARTAERSEWFMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQV 120 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 DG I++DMG + S K+ R H +S+GNPH Sbjct: 121 EADGGITIDMGRVEMQ------GTSSAKLARQVVH-----------GEQISVGNPHLACE 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V + DL + F G N+ + R + L++R +ERG G T +CG+ Sbjct: 164 VTVPVAEVDLGELP--VLDVEAFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTGIV 221 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A+ + V++ GG + + D + ++G A EG+ ++ Sbjct: 222 AAAAAATPRGE-GATWRVRVPGGECTV-FLDADGARLSGPAVIVAEGETNL 270 >gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] Length = 261 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 26/265 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ L+ + + L + D + + + DA + I N D Sbjct: 19 YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 69 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + L S+ + + T G+ + VDM + Sbjct: 70 GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 129 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L D + ++ + G PHA+ + ++ DL+ G L H Sbjct: 130 RLESRPDPLPKE--------------VVCIHTGVPHAVVILP-EISTLDLSILGPFLRYH 174 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248 F +GVN++ ++ L +RT+ERGV G TAACG+ A AS + + ++ + Sbjct: 175 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 234 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKK 273 GG L+ + V++ G + Sbjct: 235 HTWGGELMTVSQNRGRVYLQGSVTR 259 >gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029] gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029] gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN] Length = 257 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 26/265 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ L+ + + L + D + + + DA + I N D Sbjct: 15 YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + L S+ + + T G+ + VDM + Sbjct: 66 GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L D + ++ + G PHA+ + ++ DL+ G L H Sbjct: 126 RLESRPDPLPKE--------------VVCIHTGVPHAVVILP-EISTLDLSILGPFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248 F +GVN++ ++ L +RT+ERGV G TAACG+ A AS + + ++ + Sbjct: 171 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 230 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKK 273 GG L+ + V++ G + Sbjct: 231 HTWGGELMTVSQNRGRVYLQGSVTR 255 >gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 186 Score = 199 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 11/195 (5%) Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147 L + + + T RG+L + D ++SVDMG+P+L+W+ IPL D Sbjct: 2 LMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLTGEMDTTAL------ 55 Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 NP SMGNPH FFVE DL D+A+ G ++ +P+F N+ +V Sbjct: 56 ----PISGNPTACSMGNPHCTFFVE-DLASVDVAAIGPMIEANPLFRNRTNVHFVQVIDR 110 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267 + LR WERG G+ GS C +VV + V V+ GG + ++W VF+ Sbjct: 111 GRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVFL 170 Query: 268 TGEAKKEWEGKLDIK 282 TG K + GK+ I+ Sbjct: 171 TGSVKTVFSGKIAIQ 185 >gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] Length = 269 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 29/285 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G GN ++ D R + I L D I+L+ + A A +RI Sbjct: 5 FTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIAH--ARMRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEPIL 125 N DGSE + CGNG+RC++ ++ S S + ET +L A ++ I+++MG P Sbjct: 63 FNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSASN-ITIEMGSPNK 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +P++ + ++ G PH I F E+ + + L G Sbjct: 122 LNWNVPISFESK----------------IYYVHSLNTGVPHIILFAEN-IEQFPLERMGP 164 Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + HP++ +G N SI + ++ +RT+ERGV T ACG+ A A+ +A+ ++ + Sbjct: 165 FIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGVEAETLACGTGATAAALAAAFQYRLS 224 Query: 244 RAVSVKMLGGG-LLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 +S++ G L I + +V MTG A + G + +++ Sbjct: 225 APISMQTRSGICLEIGFTLLNQKFTNVTMTGPALAVFNGSIKLES 269 >gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum] gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032] Length = 277 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 105/293 (35%), Gaps = 35/293 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------HDFQD 57 + FAK N ++I ++T + + L D I+ + Sbjct: 4 TIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTV 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 F+ N DGS + CGNG+R +L SR + SF T G+ + Sbjct: 64 DPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQ 123 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + VDMG IP D + + V MGNPH V Sbjct: 124 HSAQVRVDMG--------IPDVTGLSTCDINGQVFAGLG---------VDMGNPHLACVV 166 Query: 172 EDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D+ + F GVN+ I +++ +R WERGVG T +CG+ Sbjct: 167 PGLSASALADMELRAPTFDQ-EFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGT 225 Query: 230 C-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A V V + GG + ++ D+ +TG + G++ I Sbjct: 226 VAAACAALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277 >gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] Length = 259 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 41/285 (14%) Query: 8 FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++ID R D+++ I L D ++ I+ + D + Sbjct: 5 FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKLCDRRFGVGADGLIKIN--SISGYDFEVD 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGNG RC V F + + +F I G+ A + + + M Sbjct: 63 YYNSDGSKSF-CGNGARCSVAFAHELGIIKDHVSFMAIDGVHEA-VKKGSLVFLKMN--- 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D I ++ FV++ G+PH I F E+ + +D+ S+G Sbjct: 118 -DVSEIDVSHKE---------------------FVLNTGSPHFIHFTEN-VADFDIVSYG 154 Query: 185 NLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + + EG+N++ S +++T+ERGV T +CG+ A+ +A G + Sbjct: 155 KQIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLI 214 Query: 243 --NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +VK GG L + + N ++++ G A+ ++G+ ++ Sbjct: 215 VGEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259 >gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] Length = 273 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 116/296 (39%), Gaps = 36/296 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS----- 59 + F K G N +++ ++ + AL D ++ + + A Sbjct: 1 MRFIKGHGTENDFVILPDPDGALDLRPATVAALCDRRAGIGADGVLRVVRTKAAGDPIAE 60 Query: 60 -----VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 61 ELAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGP 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G +SVDMG P++ R R + + LR VSMGNPH V+ Sbjct: 121 SGDVSVDMGAPLVQ-------------GRGRARLAGEDFTGLR----VSMGNPHLACPVD 163 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + DL + + F +GVN+ + R+ +++R ERG G T +CG+ A A+ Sbjct: 164 RPVAELDLTRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSCGTGAVAT 221 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 VA+ + + + GG + + D + G A EG++ W++ Sbjct: 222 AVAAAGEDPSPGEWIIDVPGGRVTVT-LDGRTSHLRGPAVLVAEGEIR---ADWLR 273 >gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] Length = 282 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 103/294 (35%), Gaps = 40/294 (13%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA-- 62 +DF K G N +V+D G + D ++ + A +DA Sbjct: 5 IDFTKGHGTENDFVVLDDPEGALELEAVAVAALADRRAGIGGDGVIRCVRSRCAGIDAPP 64 Query: 63 -----FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKE----- 110 F+ N DGS + CGNG+R L + F T G+ Sbjct: 65 DAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFEILTRAGVRTVDILEEPA 124 Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D S+ V MG S I V V MGNPH + Sbjct: 125 SPGGDWSVRVGMG------------ASRSTQRARTVEIAGVRLTATD----VDMGNPHTV 168 Query: 169 FFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 F+ +L DL L P G N+ + R + +R ERGVG T +CG Sbjct: 169 VFLPPELALEGLDLTRR-PALEPEPA--RGANVELVRERGPRHVAMRVHERGVGETRSCG 225 Query: 227 SAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + A VA+ +V + GG L + W + V +TG A+ +G+ Sbjct: 226 TGVAAVAVAAALRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADGR 279 >gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] Length = 335 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + N D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171 + SV++ +P A +DR + P H L+ V++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAAADLPFANLG--VDRIVDTVLPAIHPSLKF-TAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H A +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHERYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWI----KKNEDDEAY 296 +++GK + + AY Sbjct: 296 LESGKLTQATFQPTGEQAAY 315 >gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] Length = 277 Score = 198 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 31/286 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-------HDFQD 57 ++F K G N +++ +T + AL D ++ + D Sbjct: 4 IEFLKGHGTQNDFVLLPDPDASLELTPQRVAALCDRRRGLGADGVLRVVRSAALDAGPSD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115 + + F+ N DGS + CGNG+R R+L F T G + + D S Sbjct: 64 SEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDDLS 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V MG + + + + + V +GNPH + ++DD+ Sbjct: 124 VTVHMGAATITGTSVAVVGGRE-----------------LSGVAVDVGNPHLVSVLDDDV 166 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL +F EGVNL V E L +R +ERGVG T ACG+ A+V A Sbjct: 167 DELDLRDAPRY--DTEVFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVAAVAA 224 Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + +V + GG + + +TG A+ +G+LD Sbjct: 225 ALHLRGVDTGESTVDIPGGRVSVTV-GKGVSTLTGPAEFVAKGELD 269 >gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] Length = 326 Score = 198 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T + I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTVEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + IP+ + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244] Length = 326 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 33/319 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57 M+ K+ G N ++D ++T++ I L T + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L ++ Sbjct: 62 GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + V++ + I + + + F V++ NPH + FV+ Sbjct: 122 VATYQVEISPVSFEAVTISMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177 Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L + + +P F EG+N+S + L +RT+ERGVG T+ACG+A C Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281 AS + L ++VK GG + H+ + +M G A EG L D+ Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297 Query: 282 KTGKWIK----KNEDDEAY 296 G + K + + + Y Sbjct: 298 LNGAFEKITITETNEQKHY 316 >gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis BB-12] Length = 357 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%) Query: 10 KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55 K +G GN + D G H D I D ++ I Sbjct: 66 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 125 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + V+ F+ N DG+ + CGNG R +FL + + +F T G+ Sbjct: 126 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 185 Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 D VDMG + + D + + V MG Sbjct: 186 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 232 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214 NPH + VED + +L P G N+ AR+ +L++ +R Sbjct: 233 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 292 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +ERG G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A Sbjct: 293 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 350 Query: 275 WE 276 E Sbjct: 351 AE 352 >gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1] Length = 290 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 102/301 (33%), Gaps = 43/301 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIH-------- 53 S ++F K G N +V+ ++T + + AL D ++ + Sbjct: 2 SGGIEFTKGHGTRNDFVVLPDPDAALDLTPERVAALCDRHGGIGADGVLRVVRWAKLAGD 61 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK 109 V+ F+ N DGS + CGNG+R R+L R T G+ A Sbjct: 62 ESVPEPVPGVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTAT 121 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + D ++SVDMG + + + + +GNPH Sbjct: 122 LSGD-TVSVDMGPVAIGPASV-----------------ATTGGARFDGIALDVGNPHLAC 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL----ESLDLRTWERGVGLTAAC 225 D DL G +F GVN+ + +R ERGVG T AC Sbjct: 164 VTATDPDALDLT--GAPAVDPEVFPRGVNVEFVTPLDGPADGGRVRMRVHERGVGETLAC 221 Query: 226 GSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-----FMTGEAKKEWEGKL 279 G+ A V A V V GG L + + + G A G++ Sbjct: 222 GTGTVAAVVAALRAAGHPAGDVHVDTPGGRLRVTVGAGDDAATGTTVLHGPAVLLATGEI 281 Query: 280 D 280 D Sbjct: 282 D 282 >gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 275 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 34/272 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M +AK+ G GN LV+D+RG + ++A +++ D ++L+ + ++ Sbjct: 1 MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVE--SSSRLN 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE + CGNG RC+ R+ + FET+ G + A+ + Sbjct: 59 FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPFVRLRLA 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VD+G+ + K + +++G PH + F+ED Sbjct: 119 EVDLGDATWERKTSAGGQELA-------------------YSFLTVGVPHCVVFLEDLAT 159 Query: 177 --HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 +L G L + +F G N++ L L T+ERGV LT +CG+ + A+ Sbjct: 160 RPREELFRLGRELRGRTDLFPRGTNVNFLAPEKEG-LFLITYERGVEDLTRSCGTGSVAA 218 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264 V + L + V V+ LGG + D+ Sbjct: 219 AVTARRLGRCGDDVKVRNLGGINRVLLEDSGP 250 >gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24] gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24] Length = 314 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 108/311 (34%), Gaps = 47/311 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56 S + F+K G GN +++ I + + L D ++ + Sbjct: 17 SGLAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGR 76 Query: 57 -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGIL 106 + F+ N DGS + CGNG+R V FL ++ + T T G Sbjct: 77 ELQAVHPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTRAGAK 136 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 DG +VDMG + AR+ D + + R VSMGNPH Sbjct: 137 TVVRTDDG-YAVDMGPWEFIFPGEATARAMDSL------VTADGLEVPRPALSVSMGNPH 189 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220 + + +L + P + G N+ + ++ +R ERGVG Sbjct: 190 TVVALA-ELSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTITMRVHERGVG 248 Query: 221 LTAACGSAACASVVASGCLHKTNRA-----------VSVKMLGGGLLIEWHDNNHVFMTG 269 T +CG+ ACA+ VA V VK G + HV ++G Sbjct: 249 ETQSCGTGACAAAVAIRHWAGQGAPDAWNVKVPGGVVGVKFFAGP-----EGHEHVELSG 303 Query: 270 EAKKEWEGKLD 280 A G L Sbjct: 304 PAVIVASGTLS 314 >gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] Length = 425 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 97/287 (33%), Gaps = 73/287 (25%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN +++D R +A+ + D ++ + + D Sbjct: 89 LHFVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVN-GADYN 147 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120 I+I N DGSE + CGNG+RC RF+ SFT T G ++ + DG + VDM Sbjct: 148 IKIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQVKVDM 207 Query: 121 GEPILDWKLIP---LARSFDKMDRDRFHIGPVNHLF------------------------ 153 E I IP LA + + + + + Sbjct: 208 DEHIPSGPDIPTKLLATKNKAVVQAKLVVEGLPWHVTCVSMGVTFGAKEVKVKVDMGEPI 267 Query: 154 ----------------------------LRNPFVVSMGNPHAIFFVEDDLYHYDLA--SF 183 + VSMGNPH + F +L DL Sbjct: 268 LSGPGIPTKLLATKNKAAVQAELAVEGLTWHVTCVSMGNPHCVTFGAKELKVDDLKFSKI 327 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 G +H MF N + +S L++R CG A Sbjct: 328 GPKFERHEMFPARTNTESVQDSSCSHLNMRV----------CGHGAV 364 >gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] Length = 281 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 105/299 (35%), Gaps = 41/299 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++++ ++ + + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVIVEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 S D F+ N DGS + CGNG R +L + +FT T G Sbjct: 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + S++V+MG + +G ++ L V MGN Sbjct: 121 TVHSCDATAASVTVEMGPARV-------------TGVSTASVGGESYAGLG----VDMGN 163 Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PH + + + F GVN + + +R +ERGVG T Sbjct: 164 PHLAAVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQ 223 Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ A+ V V + GG + +E +D +TG + G+ + Sbjct: 224 SCGTGTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281 >gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 335 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171 + SV++ + +P A +DR + P H L+ +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKW----IKKNEDDEAY 296 + G W IK + Y Sbjct: 296 LLAGDWQQAKIKATGEQAEY 315 >gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] Length = 300 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%) Query: 10 KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55 K +G GN + D G H D I D ++ I Sbjct: 9 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 68 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + V+ F+ N DG+ + CGNG R +FL + + +F T G+ Sbjct: 69 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 128 Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 D VDMG + + D + + V MG Sbjct: 129 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 175 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214 NPH + VED + +L P G N+ AR+ +L++ +R Sbjct: 176 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 235 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +ERG G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A Sbjct: 236 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 293 Query: 275 WE 276 E Sbjct: 294 AE 295 >gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] Length = 277 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 111/283 (39%), Gaps = 27/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G GN +V+D + + + A + D +++I + A+ Sbjct: 1 MNFWKMNGNGNDFIVVDATAAENIGLDWPAVARALCPRRQSIGADGLLVIERSKTAN--F 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMG 121 F+RI N DGSE + CGNG RC RF +S FET+ G++ A+ + + ++MG Sbjct: 59 FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARVDG-RYVEINMG 117 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + + + +G PH + F +++ Sbjct: 118 RVRPEPEWSDRTMTLE--------------GETFRATFALVGVPHLVLFSREEVGVDFAR 163 Query: 182 SFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G L F +G N++ A + + T+ERGV LT +CG+ A +A+ Sbjct: 164 RWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALAARLN 223 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 + V GG + + + G G+ Sbjct: 224 GLSGPVTEVHNPGGTNRVSLTEMGDGEYEALLGGTTSLVMTGQ 266 >gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] Length = 281 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 41/299 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++I+ ++ + + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVIIEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 S D F+ N DGS + CGNG R +L + +FT T G Sbjct: 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + S++V+MG + + ++ L V MGN Sbjct: 121 TVHSCNATAASVTVEMGPARV-------------TGVSTASVAGESYAGLG----VDMGN 163 Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PH + + + F GVN + + +R +ERGVG T Sbjct: 164 PHLAAVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQ 223 Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ A+ V V + GG + +E +D +TG + G+ + Sbjct: 224 SCGTGTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281 >gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis] gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 307 Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 108/284 (38%), Gaps = 26/284 (9%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML-IHDFQDASVDAFI 64 +F +GN +V+D RG A+ L D ++ +A + Sbjct: 31 EFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLCDRHFGVGADGVLFGPLGAPEAGEPVRL 90 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENR--DGSIS 117 R+ N DG+E + GNG+R L + F T G + + G++ Sbjct: 91 RMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEFPLRTAAGDVPVRILDLASGTVQ 150 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG P + +G V GNPHA+ + ++ Sbjct: 151 VGMGRPEFG------------ATGESLDVGGRRLAVT----SVHNGNPHAVVPLA-EISA 193 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G L+A H F N+ + ++ + +ERG G T A GS+ACA+ A+ Sbjct: 194 GLARELGPLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAAAAAAH 253 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T V V+M GG + + + V MTG A++ G+ Sbjct: 254 ALGLTGPDVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRFSP 297 >gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis V9] Length = 294 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%) Query: 10 KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55 K +G GN + D G H D I D ++ I Sbjct: 3 KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 62 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + V+ F+ N DG+ + CGNG R +FL + + +F T G+ Sbjct: 63 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 122 Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 D VDMG + + D + + V MG Sbjct: 123 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 169 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214 NPH + VED + +L P G N+ AR+ +L++ +R Sbjct: 170 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 229 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +ERG G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A Sbjct: 230 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 287 Query: 275 WE 276 E Sbjct: 288 AE 289 >gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] Length = 249 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFN 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1] gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327] Length = 249 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 108/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F+ K + +F T G++ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni IA3902] Length = 249 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] Length = 335 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 129/308 (41%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ I Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAITAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A +DR + P H L+ +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK 288 + G W + Sbjct: 296 LLAGDWQQ 303 >gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K] gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K] Length = 266 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 121/290 (41%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAERARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114 A + I N DGS CGNG+RCV R L R +T G +R Sbjct: 59 TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADRAVE 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG L+ + F +G LR VSMGNPHA+ F D Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + G L + + GVN+ AR +DL WERG GLT ACG+ ACA+ V Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 A+ V V++ GG L I + V M G A++ + G+ D+ Sbjct: 217 AAVSRGLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] Length = 335 Score = 195 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57 MV K+ G N ++D +++ + A + N D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171 + SV++ +P A +DR + P H L+ V++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAAADLPFANLG--VDRIVDTVLPAIHPSLKF-TAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H A +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFECVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWI----KKNEDDEAY 296 +++GK + + AY Sbjct: 296 LESGKLTQATFQPTGEQAAY 315 >gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 122/290 (42%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D + A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114 A + I N DGS CGNG+RCV R L R +T G +R Sbjct: 59 TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVE 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG L+ + F +G LR VSMGNPHA+ F D Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + G L + + GVN+ AR +DL WERG GLT ACG+ ACA+ V Sbjct: 160 PERARALAVGPALER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 A+ V V++ GG L I + V M G A++ + G+ D+ Sbjct: 217 AAVSRGLARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] Length = 266 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 118/290 (40%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M + F K G+GN +V+D A D ++ + + + Sbjct: 2 MHGVPLSFVKYHGLGNDFIVVDG---PLMDPDRARRLCDRRRGIGADGVLTVLPPRTSGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114 A + I N DGS CGNG+RCV R L R + +T G +R Sbjct: 59 AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGLSGALVIDTDSGPKRCVVHRTPAGVPS 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG + + G +R VSMGNPHA+ F Sbjct: 119 AVSVEMGPAAVQ-------------GDEELRAGGETVRAVR----VSMGNPHAVLFDTPT 161 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 ++ G LL + GVN+ AR +DL WERG GLT ACG+ ACA+ V Sbjct: 162 RERA--SAIGPLLER--AVPGGVNVGFARP-GPHGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 AS K V V++ GG L I + V M G A + + G+ D+ Sbjct: 217 ASVRAGAVKAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266 >gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5] Length = 268 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 35/288 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 +V F K EG GN ++ID R + + I AL D +M + + +D Sbjct: 1 MLVSFVKYEGAGNDFILIDDREELFSADARLIAALCDRHFGIGADGLMTLR--RSVEMDC 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 +R N DGS + CGNG RC F F+ G+ A+ R + + ++ Sbjct: 59 SMRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRTGEIE 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +++ I + + + ++ G PH + F E +L D+ Sbjct: 119 LGMINVSEIRSGKGW---------------------WFLNTGVPHYVEFTE-ELDGVDVK 156 Query: 182 SFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-GC 238 G ++ F +G N++ A + + +RT+ERGV T ACG+ A A+ + + Sbjct: 157 GLGRMIRHDTARFPQGTNVNFAEIAGEGEIRMRTYERGVENETLACGTGATAAAIITNYA 216 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN------NHVFMTGEAKKEWEGKLD 280 L + + GG L + + + +TG A++ ++G + Sbjct: 217 LQHETTKYRITVPGGELHVRFSHEPGTQTYTDIRLTGPARRVFKGVFE 264 >gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] Length = 249 Score = 195 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T G++ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3] Length = 249 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] Length = 322 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 107/312 (34%), Gaps = 53/312 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------- 55 + F+K G GN ++I G +T++ + L D ++ Sbjct: 27 LTFSKGHGTGNDFVLIADPGDAHEVTAEQVAQLCDRHVGIGGDGLIRAVPSRFLPEGRVA 86 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108 QD + F+ N DGS + CGNG+R V FL ++ T T G+ Sbjct: 87 LEQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKV 146 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 +G +VDMG + +++ D + + R VSMGNPH + Sbjct: 147 VRTVNG-YAVDMGPWEFLFPEEATSKAMDAL------VSAEGLEVPRPGLSVSMGNPHTV 199 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L P + G N+ ++ +R ERGVG T Sbjct: 200 VALA-ELSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGET 258 Query: 223 AACGSAACASVVASGCLHKTNRAVSVK--------------MLGGGLLIEWHDNNHVFMT 268 +CG+ ACA+ VA H G G HV ++ Sbjct: 259 QSCGTGACAAAVA--IRHWAGDTAPNDWHVKVPGGVVGVKFFPGAG------GREHVELS 310 Query: 269 GEAKKEWEGKLD 280 G A G L Sbjct: 311 GPAVIVATGTLS 322 >gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] Length = 249 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ +S A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSSLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K S F T G++ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPSMIFLTGAGVIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+K+ + + G PH + F + L F Sbjct: 114 ---KIKSVQNTFEKLGK--------------TWQLCDTGVPHLVHFCQS------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEMGFAYKNEELFFEGKVKYCFEANYN 247 >gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2] gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2] Length = 288 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 23/290 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITS--------DAINALSTDDNTHFDQIMLI-HD 54 + V F K G GN V+D + + +A LS + D ++ + + Sbjct: 5 NTVPFEKFHGTGNDFFVVDADDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLALE 64 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + + ++ DGS CGNG R + R +T G A + Sbjct: 65 SRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTRRASLDG-T 123 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MG P + +PLA + +D + + V+ G PHA+ FV+D Sbjct: 124 DVTVEMGAPSFAPRDVPLASDDELVDTE---------VEGLTVTAVNTGVPHAVAFVDDV 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 L S + +F EG N+++A RT+ERGV G T +CG+ A A V Sbjct: 175 DDVD-LESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAVAVV 233 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ L + + V+V GG L + D + G A E +G+ DI Sbjct: 234 AAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283 >gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] Length = 249 Score = 194 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSTLAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58] gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58] Length = 276 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 32/287 (11%) Query: 1 MQSSMVDFA----KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ 56 M SS + G GN+ + + I L T H D + + Q Sbjct: 1 MASSFLSMTCRYPIYSGAGNRFFL----KTGSPSSPALIRLLCTQA--HVDGFLYLEPSQ 54 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 A DA + I N DGS CGNG+RC + +L ++++ T T +G+ + Sbjct: 55 IA--DAKLAIFNADGSRPTMCGNGLRCAIAYLAQKLEKPQITIATDQGVYSGVYFSWERV 112 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDM P ++ + S L F + G PH + F ++ Sbjct: 113 LVDMTLPEWNFSSHEIVLS---------------GLGKVQVFFIHTGVPHLVVFCP-EIA 156 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVV 234 D+A G L H F G N++ + S + L +RT+ERG+ +AACG+ A+V Sbjct: 157 SIDVAVLGRELRYHTTFAPSGANVNFVEIFSEQQLRIRTYERGLERESAACGTGCIAAVK 216 Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + V V + + + + + +++ G E G+L+ Sbjct: 217 TALFRGFVKQGEVIVHVSQESMKV-FIEGERIYLEGPVTIESSGRLE 262 >gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100] gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100] Length = 285 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 35/291 (12%) Query: 9 AKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDA 58 KM G GN +ID R +T L D D +LI D Sbjct: 10 TKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDG-SE 68 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGS 115 D N DGS + CGN RC RF ++ K F+T G++VA+ + Sbjct: 69 GFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSR 128 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V M E +LI L +V+ G PH + + Sbjct: 129 IRVKMPEARFIQELIELKTKS---------------SSTEKFALVNTGVPHLVQKIHAFS 173 Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 L H + G N++ S + T+ERGV T ACG+ A A+ Sbjct: 174 DTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAA 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKE--WEGKLDI 281 K +V V+M GG + + + + H M G+A ++ L++ Sbjct: 234 FVHNKETK-ESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEV 283 >gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 335 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A +DR + P H L+ +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK 288 + G W + Sbjct: 296 LLAGDWQQ 303 >gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] Length = 335 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + N D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171 + SV++ +P A D + P H L+ V++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGGDRIVDT--VLPAIHPSLKF-TAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G +L A +P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H A +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWI----KKNEDDEAY 296 +++GK + + AY Sbjct: 296 LESGKLAQATFQPTGEQAAY 315 >gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] Length = 249 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + D ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFIIANANEKQDR-STLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T I+ A N D + V +G Sbjct: 58 FYNNDGSRAPMCGNGSRAAAHFAHHINKINPNMSFLTGAKIIKANVNHD-RVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + G PH + F E+ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCEN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ SL +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDKNSLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NEVKITPKSGE-EVRFKYKNEELFFEGKVKYCFEANYN 247 >gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 164 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV DD+ Sbjct: 1 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQA 55 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 56 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 115 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 116 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 161 >gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23] gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23] gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W] gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei BD-II] Length = 335 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A +DR P H L+ +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTFLPAIHPSLKF-TAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G +L AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK 288 + G W + Sbjct: 296 LLAGDWQQ 303 >gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20] gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20] Length = 249 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++I+ D ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVIINASEKKDR-SALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F + F T G++ A + S+ V +G+ Sbjct: 58 FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANV-DNNSVEVSLGKI- 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K I A S + +N + G PH + F E+ L +DL Sbjct: 116 ---KNIQDAFSECE----------------KNWQLCDTGVPHLVHFCEN-LDEFDLKLCK 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + K+ N++ +V + +L +RT+ERGV T ACG+ A + K + Sbjct: 156 QMREKY-----NANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V G L +N +F G+ + +E + Sbjct: 211 NQARVIPKSGEELSFKFENEELFFKGKVRCCFEANYN 247 >gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] Length = 319 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 44/310 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56 + F K G N +++ N T+D + A+ D ++ Sbjct: 7 LAFTKGHGTENDFVLVADPDGVWNPTADVVAAICDRRAGVGGDGLIRAVRSSAVPDAAGT 66 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-------MKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R FL + F T G+ + Sbjct: 67 APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 DG + D+G L L D + + P R V +GNPH + Sbjct: 127 READGQWTADLGPWALTGGDDALGAGSDALV-----LVPGLDAVARPALSVDLGNPHTVV 181 Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIAR-----------VTSLESLDLRTWE 216 + D+ L DL P+ +G N+ + V + + +R E Sbjct: 182 ALPDEAELAAADLT---RAPEVRPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHE 238 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NHVFMTG 269 RG G T +CG+ ACA+ +A+ V + GG L++ V+++G Sbjct: 239 RGSGETRSCGTGACAAALATRAWAGRGAPDVWRVDVPGGRLVVTVGAGSSLAQGTVWLSG 298 Query: 270 EAKKEWEGKL 279 A+ G L Sbjct: 299 PAQLVATGVL 308 >gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] Length = 249 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ + A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSVLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T G++ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQFCDTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] Length = 276 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 38/292 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-------HDFQD 57 + FAK G N ++I+ ++S+ + L D ++ + + Sbjct: 1 MKFAKGHGTENDFVIIEDHEGTLELSSERVRVLCDRRAGIGGDGLLRVVRAGALGEPVAE 60 Query: 58 --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-- 111 A D F+ N DGS + CGNG R ++ SR + +SF T G + Sbjct: 61 GIAPADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSF 120 Query: 112 --RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 D +SV+MG + S M + F V MGNPH A Sbjct: 121 DEHDAQVSVEMGPAEV------TGVSTASMVGENFA-----------GLGVDMGNPHLAA 163 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + D+A H F GVN+ + ++ +R +ERGVG T +CG+ Sbjct: 164 VIPGLTPESLADMAFAQPEF-DHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGT 222 Query: 228 AAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A+ A + V V + GG + +E D +TG ++ EG Sbjct: 223 GTVAAARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEGT 273 >gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 85/290 (29%), Positives = 122/290 (42%), Gaps = 34/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D + A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114 A + I N DGS CGNG+RCV R L R +T G +R Sbjct: 59 AATMHIFNSDGSVAAMCGNGIRCVARHLADARGLDGDLVLDTDSGPKRCTIHRGPGGAVE 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++SV+MG L+ + + +G LR VSMGNPHA+ F D Sbjct: 119 AVSVEMGPARLEGE-------------QEYRVGGEALRALR----VSMGNPHAVLF--DA 159 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + G L + + GVN+ AR +DL WERG GLT ACG+ ACA+ V Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216 Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 AS V V++ GG L I + V M G A++ + G+ D+ Sbjct: 217 ASVSRGLARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] Length = 245 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 35/277 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN ++ + + DAIN + + D +++I Q A D Sbjct: 1 MTYTKYSASGNDFVIF-HTLIKKDYSQDAINLCNRTEGIGADGLIVIVPNQTA--DFEWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGNG R V + + + F T G + + + + + M +P Sbjct: 58 FYNSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITSSVDGN-IVETQMTKP- 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ ++ F + +++ G PH I V+ DL + Sbjct: 116 -------------KIIKEEFEQEGL------TWYLIDTGVPHLITIVD------DLEKYN 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + L + N++ A++ + +RT+ERGV G T ACG+ A + + L + Sbjct: 151 HDLCAKMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANALGLVD 209 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279 V L + + +F G KK + ++ Sbjct: 210 TKAFVYPKSKEELTVSIR-DGELFFKGAVKKVFVAQI 245 >gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] Length = 306 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 105/307 (34%), Gaps = 41/307 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFD--------------QIM 50 V F K G N +++ ++++ + + D + Sbjct: 13 VPFGKGHGTQNDFVLLADPDAKLRLSAERVARICDRRAGIGGDGLLRAARAGALLAEGEI 72 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG---- 104 D F+ N DG VQ CGNG R FL + +R T G Sbjct: 73 AALPEGVGEEDWFMDYRNADGGAVQMCGNGARVFAHFLRANGLEERDEHVIGTRAGAKRV 132 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 L+A + + V+MG + + + + F V +GN Sbjct: 133 RLLAFDRGSAEVEVEMGRARVGGRS-----------AASLPAEGTEGRRVFDGFAVDVGN 181 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH + D L DLA +F EGVN+ S E LR ERGVG Sbjct: 182 PHLVCLAPALGLDGLAGLDLARQPEYDR--DVFPEGVNIEFVVPHSPEKATLRVHERGVG 239 Query: 221 LTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ + A L V+V GG + + + ++G + G+ Sbjct: 240 ETKACGTGSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEF 299 Query: 280 DIKTGKW 286 D+ G+W Sbjct: 300 DL--GQW 304 >gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang] gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang] Length = 335 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A +DR + P H L+ +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G +L AK+P F EGVN++ A ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK 288 + G W + Sbjct: 296 LLAGDWQQ 303 >gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14] gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] Length = 269 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 28/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ I L + D + + + A DA + I N D Sbjct: 15 YSGTGNSFIL-----GEFIPPLQHIVFLCQKEKV--DGFLCVEPSEIA--DAKLTIFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GSE CGNG+RCV+ + + + + ET+RG+ K + VDM +LDWK Sbjct: 66 GSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDMT--LLDWK-- 121 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 K + H+ P F + G PH + FV D+ + +G L H Sbjct: 122 -------KTKKTLTHVLP---GMPEEVFFIDTGVPHVVVFVP-DVNKVPVQEWGAFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS- 247 F GVN+ + ++L + T+ERG T +CG+ AS + + + + S Sbjct: 171 EDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAADVFSLEQDFSL 230 Query: 248 -VKMLGGGLLIEWHDNNHVFMTGEAKK 273 V G ++ + +N VF+ G Sbjct: 231 LVCSRSGNIVKIFSENGKVFLEGPVTL 257 >gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864] Length = 376 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 125/368 (33%), Gaps = 95/368 (25%) Query: 11 MEGIGNKILVIDMRGCHDNITS----------------------DAINALSTDDNTHFDQ 48 M G GN +V++ T+ D + DQ Sbjct: 1 MTGCGNDFVVLEASDLESLETASTGFGVTATTASGSGQAMLDKTDIRAMCDRRNGIGCDQ 60 Query: 49 IMLIHD--------FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--------- 91 +++I ++I N DGSE +CGN RCV + R Sbjct: 61 LLVIAAQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDARRE 120 Query: 92 ----MKRKSFTFETIRGILVAKENRDGS--------------------ISVDMGEPILDW 127 + T L D S + VDMG P +W Sbjct: 121 QVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPEFEW 180 Query: 128 KLIPLAR------SFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178 IPL+R + D + P + L V MGNPH +F + E+ L Sbjct: 181 TRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARGVAVGMGNPHLVFLLPSEEQLNQI 240 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARV----------TSLESLDLRTWERGVGLTAACG-- 226 D+ + G+ L + +F +GVN++ A + + + + WERG G T ACG Sbjct: 241 DVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLACGSA 300 Query: 227 ----------SAACASVVASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + + A+ + N++V SV+M GG L + + + G ++ + Sbjct: 301 ACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPSRVVF 360 Query: 276 EGKLDIKT 283 G + Sbjct: 361 VGVYSPPS 368 >gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] Length = 286 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 110/304 (36%), Gaps = 46/304 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + FAK G N ++++ + + + AL D ++ + + Sbjct: 1 MKFAKGHGTENDFVIVEDHAAATPLAPERVAALCDRRAGIGGDGLLRVVRAEALLAAGEI 60 Query: 58 -------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 A D F+ N DGS + CGNG R +L SR ++ FT T G Sbjct: 61 EALAEGIAPTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRV 120 Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + ++V+MG + + ++ L V MGN Sbjct: 121 TVHSCDEQAAEVTVEMGPA-------------EVTGVSTASMAGESYAGLG----VDMGN 163 Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PH V D +F + F GVN+ + + +R +ERGVG T Sbjct: 164 PHLAAVVPGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETR 223 Query: 224 ACGSAACASVVASGCLHKTN------RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +CG+ A+ A+ + V V + GG + ++ ++ +TG + G Sbjct: 224 SCGTGTVAAATAALADAAVDHTTTPHGTVHVHVPGGEVTVDIYEGGS-RLTGPSAIVATG 282 Query: 278 KLDI 281 + + Sbjct: 283 ETSL 286 >gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003] Length = 303 Score = 191 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 19/267 (7%) Query: 32 SDAINALSTDDNT--HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 +D L ++ D I+ + +A +R++N DGS CGNG+R V R+L Sbjct: 9 ADFAIKLCDRKHSLGGADGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLL 68 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD----KMDRDRFH 145 + ET++ IL K+ + S+ P ++ P+ + + + ++ Sbjct: 69 EKHALTEAKVETMKAILDVKK----ATSLGFDIPTYQVEISPVKFNAESLPMNVGVEKLF 124 Query: 146 IGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIA 202 V L F VS+ NPH I FV+ + D + + L +++P F +GVN+S Sbjct: 125 NQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLNSENPYFPDGVNVSFV 184 Query: 203 RVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH 260 + S +++ +RT+ERGVG T ACG+A A + L K ++V GG + + Sbjct: 185 KRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNVYNDGGRVQVTAK 244 Query: 261 DNN----HVFMTGEAKKEWEGKLDIKT 283 + + + G A G ++ ++ Sbjct: 245 KDEAGDISLQLIGNATFVSTGSVNYES 271 >gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] Length = 299 Score = 191 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 108/308 (35%), Gaps = 52/308 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + QD Sbjct: 8 YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108 + F+ N DGS + CGNG R + F L R + F T G+ + Sbjct: 68 DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKIL 127 Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + V+MG S+ + D D + + V M Sbjct: 128 TSLGEVEGLGKDVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDM 174 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLR 213 GNPH + +ED +L+AK P N+ R+ +R Sbjct: 175 GNPHVVAVIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMR 234 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 ERG G T +CG+ CA+ + + ++ + GG L ++ D++ V +TG A Sbjct: 235 VNERGCGETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATI 292 Query: 274 EWEGKLDI 281 GK+++ Sbjct: 293 V--GKVEL 298 >gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] Length = 331 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 107/322 (33%), Gaps = 68/322 (21%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K G GN +++ ++ ++A+ ++ D ++ + Sbjct: 12 TKAHGTGNDFILVPDFAGTLDLPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVARD 71 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS Q CGNG+R V +L +S T T G+ + Sbjct: 72 FPEAEWFMDYRNADGSIAQMCGNGLRVFVHYLRIQGVIDLKPGRSVTVATRGGVKAVSFD 131 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++DMGE L D D R + V R V+M NPH + + Sbjct: 132 GA-VYTIDMGEYGLPRG--------DAGDDTRVAVPGVGE---RPALSVTMPNPHTVVLL 179 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-------------------- 211 D A P+ EG NL + + + Sbjct: 180 -DSAEELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRA 238 Query: 212 ----------------LRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGG 254 +R ERGVG T ACG+ CA+ +A + V ++ GG Sbjct: 239 DQGLADRSVSPSNPALMRVLERGVGETLACGTGTCAAALAVLLSRGEREGEVRLRSPGGP 298 Query: 255 LLIEWHDNNHVFMTGEAKKEWE 276 L + + F+TG A E Sbjct: 299 LTVRI-EGGRAFLTGPAVLVAE 319 >gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228] gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228] Length = 249 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 62/277 (22%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F + F T G++ A + S+ V +G+ Sbjct: 58 FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANV-DNNSVEVSLGKI- 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K I A S + +N + G PH + F E+ L +DL Sbjct: 116 ---KNIQDAFSECE----------------KNWQLCDTGVPHLVHFCEN-LDEFDL---- 151 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L K N++ +V + +L +RT+ERGV T ACG+ A + K + Sbjct: 152 -KLCKQMREKYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V G L +N +F G+ + +E + Sbjct: 211 NQARVIPKSGEELSFKFENEELFFKGKVRYCFEANYN 247 >gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] gi|224945941|gb|EEG27150.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] Length = 307 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 108/307 (35%), Gaps = 50/307 (16%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + + F K G N +++ ++T I L D I+ + Sbjct: 14 TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 73 Query: 53 ---HDFQDASV----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103 ++ D F+ N DGS + CGNG R ++ SR + FT T Sbjct: 74 LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 133 Query: 104 G----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 G I+ + ++ + +SV MG + +G + Sbjct: 134 GAKPVIVHSFDDDNAVVSVAMGPAT-------------SLGESTCSMGGRMYA----GMG 176 Query: 160 VSMGNPHAIFFVEDDLYH--YDLASFGNLLAKHPMFSEGVNLSIAR--VTSLESLD--LR 213 V MGNPH V DL F EGVN+ + V S E +R Sbjct: 177 VDMGNPHLACVVPGLTAEALADLTLDRPEFDT-EFFPEGVNVEVLTELVHSPEGYRTHMR 235 Query: 214 TWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 +ERGVG T +CG+ A+ A N V V++ GG + + + + G + Sbjct: 236 VYERGVGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSA 294 Query: 273 KEWEGKL 279 G+L Sbjct: 295 LVATGEL 301 >gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977] gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium abscessus] Length = 295 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 109/302 (36%), Gaps = 45/302 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 + F K G N +V+ +++ A+ AL D ++ + Sbjct: 1 MKFTKGHGTQNDFVVLPDVHIKRDLSVAAVQALCDRQRGLGADGVLRVTTVGAALEGGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 +S D F+ N DGS + CGNG+R +L R F ++ G Sbjct: 61 AEKPAGVSSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + N ++VDMG + +G L + +GN Sbjct: 121 RINSWSQLTADVTVDMGPVK-------------EFGAGEAIVGGRRFSGL----AIDVGN 163 Query: 165 PH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGV 219 PH + V L + +F +GVN+ + S ++ +R ERGV Sbjct: 164 PHLACVDAVLTTEQLRILDVGAPVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGV 223 Query: 220 GLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ A+ + + V V + GG + + + F+ G + +G+ Sbjct: 224 GETRSCGTGTVAAAYAALRHIGQRTGEVVVNIPGGQVRVTVTGESS-FLRGPSMLLADGE 282 Query: 279 LD 280 + Sbjct: 283 IS 284 >gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1] Length = 284 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 30/285 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVD 61 M+D KM G GN LV+D + ++ A A + + D ++ + + A+ Sbjct: 1 MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAA-- 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC RF R + + TFET G + A + +++D+ Sbjct: 59 FRMRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFETRGGDVHAVVRGN-RVALDL 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYD 179 ++ S + D + +G PHA+ F E + Sbjct: 118 APVSTGSAVLKAHASVEGCD--------------FTYAFLVVGVPHAVIFERERRRSIAE 163 Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLE--SLDLRTWERGV-GLTAACGSAACASVVA 235 A G L + +F G N++ A ++S + +LD+ T+ERGV +T +CG+ + AS +A Sbjct: 164 YAVLGRALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAIA 223 Query: 236 SGCLHKTNRAVSVKMLGG--GLLIEWHDNNHV--FMTGEAKKEWE 276 L V V GG + + W + + V + G A E Sbjct: 224 GRLLGVVGDEVRVVNPGGVNDVSLTWIETDVVQPRLEGGALMIAE 268 >gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 299 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 111/302 (36%), Gaps = 40/302 (13%) Query: 9 AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD---------- 57 K GN +V +D G ++ + D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG R + F + + F T G+ V Sbjct: 68 VCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D +G+ + ++ S+ + D D + + V MGNPH + Sbjct: 128 TSLGDVPT---LGKDVFQVEM----GSWKRGDLDGYEVTIPGTAGSARGTFVDMGNPHVV 180 Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGV 219 +ED +L+ K P N+ R+ + + +R ERG Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSEGDNEGNATMRVNERGC 240 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G T +CG+ CA+ + + ++ + GG L ++ DN+ V +TG A GK+ Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDND-VKLTGSATIV--GKI 296 Query: 280 DI 281 ++ Sbjct: 297 EL 298 >gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 101/273 (36%), Gaps = 33/273 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + AK GN ++ D + A D ++++ D + Sbjct: 1 MQIAKYNASGNDFVIFHTFHETDR-SQLAQVLCHRQKGVGADGLIVLLPH--GEYDFKWQ 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE CGNG R + ++ K F T G++ ++ + ++ P Sbjct: 58 FYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAGVIASEVIE-CVVETELTTPK 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + L+ SF++ G PH + FVE D+A F Sbjct: 117 V------LSESFEENGL--------------TWHFCDTGVPHLVTFVE------DVALFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +A+ + N++ A +L +RT+ERGV T ACG+ A ++ + Sbjct: 151 KTIARQMRYKYNANVNYAM-LKENTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRVG 209 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + V G L ++ +F GE +K +E Sbjct: 210 ESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFE 242 >gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] Length = 299 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 108/308 (35%), Gaps = 52/308 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + QD Sbjct: 8 YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108 + F+ N DGS + CGNG R + F L R + F T G+ + Sbjct: 68 DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRGGVKIL 127 Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + V+MG S+ + D D + + V M Sbjct: 128 TSLGEVEGLGKDVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDM 174 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLR 213 GNPH + +ED +L+AK P N+ R+ +R Sbjct: 175 GNPHVVAVIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMR 234 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 ERG G T +CG+ CA+ + + ++ + GG L ++ D++ V +TG A Sbjct: 235 VNERGCGETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATI 292 Query: 274 EWEGKLDI 281 GK+++ Sbjct: 293 V--GKVEL 298 >gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 151 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 8/150 (5%) Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 +++ + + + VSMGNPHAI ++ DD+ H D+ G H F Sbjct: 3 EKEEVINEPLDVNGK----IYYITAVSMGNPHAIVYM-DDIDHLDIEKIGPAFENHVAFP 57 Query: 195 EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLG 252 + VN V ++ +R WERG G T ACG+ ACA VAS + V+VK+LG Sbjct: 58 DRVNTEFVEVIDEHTVKMRVWERGSGETLACGTGACAVAVASVLNGHVDGDSPVTVKLLG 117 Query: 253 GGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 G L I W N V+MTG A ++G++D+ Sbjct: 118 GDLQIFWNRQENLVYMTGPAATVFDGEIDV 147 >gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] Length = 317 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 23/281 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K+ G N + + D+ AI + D D I++I A A +R Sbjct: 3 MTLIKVHGSMNTFYMFEG-EERDDYARLAIQLSALDKKI--DGILVILPS--AVAHAKMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGSE CGNG+RCV R++ R + ET++ L K+ +++ G Sbjct: 58 VFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASLRVKKEE----TLNEGIETY 113 Query: 126 DWKLIPLARS-----FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL--YH 177 ++ P++ S +D + P+ + PF VS+ NPH I V ++L Sbjct: 114 AVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAVSVPNPHLIGIVPEELQKDT 173 Query: 178 YDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + ++ F +GVN+S + +RT+ERGVG T ACG+A AS + S Sbjct: 174 SHQQKWAQQFNGENKYFPDGVNVSYVTPVERG-IFVRTYERGVGFTNACGTAMTASALIS 232 Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273 VSV GG + + +TG A Sbjct: 233 CMAGLVPFGEVSVYNPGGLVKCSVRKEGETIQLQLTGNATY 273 >gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] Length = 254 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 107/282 (37%), Gaps = 35/282 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + K+ G GN LV + + AL D ++ + + Sbjct: 1 MRLTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHDA------M 54 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DGS + GNG+RC+ +T FET G + + SV Sbjct: 55 VLYNADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGREGGSV------ 108 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--FFVEDDLYHYDLAS 182 +GPV+ + V GNPH + +L D+AS Sbjct: 109 ----------------LGATTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVAS 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H + +GVN+ A V + + + +R +ERGVG T ACG+ + A VA Sbjct: 153 LGRCAQAH--YPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLV 210 Query: 243 NRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 R V V+ GG L +E + V + G ++ +D++ Sbjct: 211 ERTSVRVRNPGGALTVEVTEPEPV-LVGPSRLVASVDVDVEA 251 >gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] gi|305658898|gb|EFM48398.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 50/307 (16%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + + F K G N +++ ++T I L D I+ + Sbjct: 12 TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 71 Query: 53 ---HDFQDASV----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103 ++ D F+ N DGS + CGNG R ++ SR + FT T Sbjct: 72 LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 131 Query: 104 G----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 G + + ++ + +SV MG + +G + Sbjct: 132 GAKPVTVHSFDDDNAVVSVAMGPAT-------------SLGESTCSMGGRMYA----GMG 174 Query: 160 VSMGNPHAIFFVEDDLYH--YDLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLR 213 V MGNPH V DL F EGVN+ + + +R Sbjct: 175 VDMGNPHLACVVPGLTAEALADLTLDRPEF-DAEFFPEGVNVEVLTELAHSPEGYRTHMR 233 Query: 214 TWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272 +ERGVG T +CG+ A+ A N V V++ GG + + + + G + Sbjct: 234 VYERGVGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSA 292 Query: 273 KEWEGKL 279 G+L Sbjct: 293 LVATGEL 299 >gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] Length = 291 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 107/299 (35%), Gaps = 38/299 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH-------- 53 SS + FAK G N +V+ +++ + A+ D ++ + Sbjct: 2 SSGIRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAGPD 61 Query: 54 -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILV 107 V+ F+ N DGS + CGNG+R R+L T G+ Sbjct: 62 VPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEALLPDGPGAELALGTRGGVRT 121 Query: 108 AK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + + DG +SV MG + R + G V +G Sbjct: 122 VRFAGGDGADGEVSVGMGVAR-------VGDESTATVRGHAYAG----------VAVDVG 164 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 NPH D G P +F GVN+ S + + +R ERGVG T Sbjct: 165 NPHLACVTAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGVGET 224 Query: 223 AACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +CG+ A+VVA+ +R V V GG L + + + G A G++D Sbjct: 225 RSCGTGTVAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGEID 283 >gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] Length = 299 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 40/302 (13%) Query: 9 AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIML--------------IH 53 K GN +V +D G H+ + D ++ I Sbjct: 8 YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108 D D F+ N DGS + CGNG R + F + K F T G+ + Sbjct: 68 DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVKIL 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D +G+ + ++ ++ + D D + + V MGNPH + Sbjct: 128 TSLGDVP---GLGKDVFQVEM----GAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVV 180 Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGV 219 +ED +L+ K P N+ R+ +R ERG Sbjct: 181 AVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGC 240 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G T +CG+ CA+ + + ++ + GG L ++ D + V +TG A GK+ Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKI 296 Query: 280 DI 281 ++ Sbjct: 297 EL 298 >gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 48/278 (17%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 + F KM+ GN +V++ + T + ++ DQ++++ Q DA Sbjct: 4 LPFYKMQAQGNDFVVLNGLTSTLPEFTEAWVRRITERRYGIGCDQLLVLE--QSDKADAA 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 IRI N DGSE +CGNG+RCV + L + ++ I+ A+ +G I V+MG Sbjct: 62 IRIFNNDGSEAANCGNGLRCVGQLLIELLGKEFVLIALKDRIVRAEAGING-ICVEMGPA 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + +GN H +FF Sbjct: 121 TV-------------------------INSTDAHVDIDIGNQHRVFF------------- 142 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 F +N+ I + + ERG G T ACGS ACA+ A Sbjct: 143 ----EATEAFPSDLNVEIVTGQIANHVYIDIIERGAGRTLACGSGACATAAAIWYSEGEV 198 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R ++++M GG + + N V + G + + G I Sbjct: 199 RPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235 >gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] Length = 299 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 64/302 (21%), Positives = 107/302 (35%), Gaps = 40/302 (13%) Query: 9 AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIML--------------IH 53 K GN +V +D G H+ + D ++ I Sbjct: 8 YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108 D D F+ N DGS + CGNG R + F + K F T G+ V Sbjct: 68 DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVKVL 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D +G+ + ++ ++ + D D + + V MGNPH + Sbjct: 128 TSLGDVP---GLGKDVFQVEM----GAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVV 180 Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGV 219 +ED +L+ K P N+ R+ +R ERG Sbjct: 181 AVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGC 240 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G T +CG+ CA+ + + ++ + GG L ++ D + V +TG A GK+ Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKI 296 Query: 280 DI 281 ++ Sbjct: 297 EL 298 >gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] Length = 382 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 4/155 (2%) Query: 132 LARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 +A + +M D P + +VSMGNPHA+ V DD+ + G L+A H Sbjct: 227 MASADRQMIGDATPETPAHGTTATVWLVIVSMGNPHAVQLV-DDVERAPVPEIGPLIANH 285 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F++ VN +V + LR +ERG G T ACGS ACA+V A L + V V M Sbjct: 286 ARFAQRVNAGFMQVVDRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAM 345 Query: 251 LGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKT 283 GG + + W + V MTG A +EG++++ + Sbjct: 346 RGGLVSVAWSGAATDSVVMTGPATTVFEGQIELPS 380 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 ++ + F KM+G GN +V+D +++ L+ DQI+ + A + Sbjct: 33 RAMQIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQILGVRPAPAADI 92 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 D I N DGSEV CGNG RC+ RF+ + ++ +T G++ + N DG +SV Sbjct: 93 DFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSV 152 Query: 119 DMGEPILDWKLIPLARS 135 DMG + +P S Sbjct: 153 DMGRAQFEPASLPFDAS 169 >gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 292 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 108/310 (34%), Gaps = 52/310 (16%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57 + + F K +G GN ++ +++ I + D ++ + Sbjct: 2 ATLHFTKGQGTGNDFVLYADPDGTLPLSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGA 61 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGIL 106 + + F+ N DGS + CGNG+R VR+L + T G+ Sbjct: 62 EALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYLIESRLVQLADGDTLPIGTRSGVR 121 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + G VD+G L PL R+ + R + +GNPH Sbjct: 122 DVQRTLSG-FQVDLGRWRLAGGE-PLVRAKE-------------LPVARLGLGIDLGNPH 166 Query: 167 AIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218 + + D+ L DL L P G N+ + +R ERG Sbjct: 167 VVVALADESELESADLTYI-PHLEPAPQ--GGANVEFVVPHEPLVKDGVGRIRMRVHERG 223 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVS----VKMLGGGLLIE---WHDNNHVFMTGEA 271 G T +CG+ A + A H V + GG + + D HV ++G A Sbjct: 224 SGETLSCGTGA--AAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPA 281 Query: 272 KKEWEGKLDI 281 + + G L++ Sbjct: 282 ELVYTGALEL 291 >gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|262184295|ref|ZP_06043716.1| diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|254767098|sp|C3PGX6|DAPF_CORA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|227454327|gb|ACP33080.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] Length = 278 Score = 189 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 112/300 (37%), Gaps = 46/300 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++++ G + + + AL D ++ I Sbjct: 1 MKFAKGHGTENDFVIVEGTG---PLPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEI 57 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG R ++ SR + +FT T G Sbjct: 58 DELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLLEEDTFTVGTRAGAKQV 117 Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SV+MG + L S M + F V MGN Sbjct: 118 TVHSFSETEAEVSVEMGPAQV------LGVSTASMAGESFA-----------GLGVDMGN 160 Query: 165 PHAIFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + L DLA + F GVN+ + + +R +ERG G T Sbjct: 161 PHLAAVIPG-LTAEDLAAKRLEQPVFDADFFPAGVNVELVTPLCDGVIHMRVFERGSGET 219 Query: 223 AACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ A+ + V V + GG + +E ++ +TG ++ G+ + Sbjct: 220 RSCGTGTVAAACAALADASQVTGHVRVIVPGGEVEVEITEDGS-TLTGPSRIVATGETSL 278 >gi|290988396|ref|XP_002676907.1| predicted protein [Naegleria gruberi] gi|284090512|gb|EFC44163.1| predicted protein [Naegleria gruberi] Length = 408 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 126/383 (32%), Gaps = 107/383 (27%) Query: 6 VDFAKMEGIGNKILVI------------DMR---GCHDNITSDAINALSTDD-NTHFDQI 49 + F KM G+GN + I D R N+ I L D + Sbjct: 22 ITFCKMHGLGNDYIYINCCNLLHSSEANDFRIYLNHQHNLIEYCIQKLCHRTFGIGADGV 81 Query: 50 MLIHDFQDASVD----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFT 98 + I + ++ + + N DGS + CGNG+RCV +F R ++ Sbjct: 82 IFITNPTPELLENETNHHQIIHCQMEMYNSDGSSGEMCGNGLRCVAQFACDRLVESGKIK 141 Query: 99 FETIRG-----ILVAKENRDGS--------------------ISVDMGE---PILDWKLI 130 +T+ G + + NR + ++MG +++ Sbjct: 142 KQTLEGGQLGYRINVQSNRGKRLYQCICYEDRSTFSKSSPLMVEIEMGNLQTKSVNFSFE 201 Query: 131 PLARSFDKMDRDRFHIGPV---NHLFLRNP-FVVSMGNPHAIFFVED------------D 174 + S + ++++ I + +L P + + + NPHAI +V + Sbjct: 202 NNSNSIEYVEQEENSIRKIIFKQYLDCEIPLYCLLVPNPHAICWVNEISSQNEIDNTMKA 261 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESL-------------------DLRT 214 + + L + G ++ +F N+ S + + RT Sbjct: 262 VDSFPLHTIGPIIENLKQLFPNRTNVEFIETISAQHIETNDSPLIKSLKSNCILSARQRT 321 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNR---------AVSVKMLGGGLLIEWHDNNH- 264 WERG G T ACG+ A A + V + + GG L +H +N Sbjct: 322 WERGSGETNACGTGAFAVSQVLYLRNAITNSIGNIPNTATVRISLNGGDLWFRYHKSNPT 381 Query: 265 ------VFMTGEAKKEWEGKLDI 281 V M G G + Sbjct: 382 SLDHIQVNMIGSVNYSHTGSFKL 404 >gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis] Length = 205 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 90/231 (38%), Gaps = 29/231 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K +G GN ++ID R +I A LI D + Sbjct: 1 MIHFWKYQGAGNDFIMIDDRDATFDINDHEKVAFLCHRRFGVGGDGLILIRLKEGYDFEM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123 N DG CGNG RC VRF + + T F G A + + + M P Sbjct: 61 VYFNADGHVGTMCGNGGRCAVRFAHTLGLFDTTTSFWAADGAHEATLDEQQLVHLKMNPP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 I + + + G+PH + F E DL ++D + Sbjct: 121 ------------------GEIEINA-------DHYFMDTGSPHYVRF-EKDLDNFDCVTE 154 Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 G + + F EG N++ A+VT +SL +RT+ERGV T ACG+ A Sbjct: 155 GKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGVTAC 205 >gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] Length = 246 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 102/277 (36%), Gaps = 34/277 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN + I + ++AI + + D +++ +A D Sbjct: 1 MTYTKYSASGNDFI-ISHSFIEKDYKAEAIKLCNRTEGIGADGFVVLVPSSEA--DFKWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGN R V + + F T GI+ A D Sbjct: 58 FYNSDGSDASMCGNATRAVTHYAYTNGLINTNQARFLTGAGIIKAVVEND---------- 107 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ + K+ + F +V G PH + V+ DL + Sbjct: 108 -----IVETQLTKAKVINEEFSEDG------FIWHLVDTGVPHLVTIVD------DLNLY 150 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + L + N++ A++ + ++ +RT+ERGV G T ACG+ AS + + L Sbjct: 151 NHELCAKMRYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V G L +N ++ G KK + L Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKKVFTVTL 246 >gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 285 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 14/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 +DF K GN +V+D + + + + D ++ + + Sbjct: 1 MDFVKYTAQGNDYIVLDPNKMAMDFDVELVRKICDRRTGIGADGVLY--GPHLNNGKLGL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISVD 119 + N DGS GNG+R R+L +S +FE + I V + V Sbjct: 59 EVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLVS 118 Query: 120 MGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +G LD +P+ K + HI V +GNPH + + Sbjct: 119 LGSFCLDSSKVPVMMDAKKTVLNETLHIAGREISI----SCVDIGNPHCVVLGQ-AADRA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G L+++H +F + N+ + S +++ TWERG G T A GS+ACA+ Sbjct: 174 TAELLGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAVCHT 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 L + V+V M GG + + ++ + + G + G Sbjct: 234 LGLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG 272 >gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] Length = 266 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 109/285 (38%), Gaps = 30/285 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++F K G N +V+ ++ + AL D ++ + + Sbjct: 1 MKIEFLKGHGTENDFVVVPDPADALTLSEAEVAALCDRRAGIGGDGLLRVVEHD---GRW 57 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116 F+ N DGS + CGNG+R L + + + F +T G+ + + D ++ Sbjct: 58 FMDYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQADSTDATV 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175 V MG ++ + AR D F V +GNPH + Sbjct: 118 KVGMGR--VEVTGVSTARMGD---------------FDFAGLGVDVGNPHLAAVIPGLTA 160 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D F H F EGVN+ + + + +R WERGVG T +CG+ A+ A Sbjct: 161 AELDAMQFAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARA 220 Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V+V + GG + +E + MTG +K G + Sbjct: 221 ALADAGVENGTVTVNVPGGAIEVELS-DGEALMTGPSKIVARGTV 264 >gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22] gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22] Length = 246 Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 34/277 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN ++ D T +AI + + D +++ ++ D Sbjct: 1 MTYTKYSASGNDFIISHSFIEKDYKT-EAIKLCNRTEGIGADGFVVLVP--NSEADFKWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGN R V + + R F T GI+ A D Sbjct: 58 FYNSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGIIKAVVEND---------- 107 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ + K+ + F +V G PH + V+ DL + Sbjct: 108 -----IVETQLTKAKVINEEFSEDG------FIWHLVDTGVPHLVTIVD------DLNLY 150 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + L + N++ A++ + ++ +RT+ERGV G T ACG+ AS + + L Sbjct: 151 NHELCAKMRYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V G L +N ++ G KK + L Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKKVFTVTL 246 >gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] Length = 321 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 109/306 (35%), Gaps = 40/306 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------LIHDFQDA--S 59 K G N +++D R ++ + L D ++ L+ D D Sbjct: 22 TKGHGTQNDFVLLDDRDGALDLAPVLVRRLCDRRAGVGGDGVIRLVASELVPDAPDDARG 81 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILV-----AKE 110 F+ N DGS Q CGNG+R R+ T G+ + Sbjct: 82 TAWFMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEV 141 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +V MG L LA D H+G + R V +GNPH + Sbjct: 142 GDGPWFTVGMGVVTLVGGDDALASGGDA----EVHVGGL--AVTRPGLSVDVGNPHTVVV 195 Query: 171 V--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGV 219 + E DL DL + ++ P+ ++G N+ + E + +R ERGV Sbjct: 196 LAQEGDLEQADL-TSAPVVR--PVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGV 252 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 G T +CG+ A A+ A V + GG + + H + + G A E Sbjct: 253 GETRSCGTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEA 312 Query: 278 KLDIKT 283 ++D+ Sbjct: 313 RVDLAA 318 >gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] Length = 314 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 111/312 (35%), Gaps = 53/312 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + F+K G GN +++ I + + AL D ++ + Sbjct: 19 LRFSKGHGTGNDFVLVADPEGEHTIDAGHVAALCNRHLGIGGDGLIRAVPSRFLPEGREI 78 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVA 108 + + F+ N DGS + CGNG+R V FL + + T G+ Sbjct: 79 LAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLKTV 138 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG +VDMG + A++ D + + R VSMGNPH + Sbjct: 139 VRTADG-YAVDMGPWEFIFPGEATAKAMDSL------VTAEGLEVPRPALSVSMGNPHTV 191 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L + A P+ + G N+ + S+ +R ERGVG T Sbjct: 192 VALA-ELGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERGVGET 250 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKM--------------LGGGLLIEWHDNNHVFMT 268 +CG+ ACA+ VA + ++ GG + HV ++ Sbjct: 251 QSCGTGACAAAVAIRHWAGAGAPDAWRVNVPGGVVGVKFFAGPGG--------HEHVELS 302 Query: 269 GEAKKEWEGKLD 280 G A G L Sbjct: 303 GPAVIVASGTLS 314 >gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] Length = 292 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 115/308 (37%), Gaps = 52/308 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQ------- 56 + F K +G GN ++ ++T + AL D + + + Sbjct: 4 LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAA 63 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108 D + F+ N DGS + CGNG+R FL ++ T G+ Sbjct: 64 LDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTVPIGTRAGVRDV 123 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + G VD+G L PL R+ D R + +GNPH + Sbjct: 124 QRSGSG-FQVDLGRWALAGGE-PLVRAKD-------------LQVARPGLGIDVGNPHVV 168 Query: 169 FFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220 + ED+L DLA F L P EG N+ + + +R ERG G Sbjct: 169 VALSSEDELAEADLA-FAPQLDPEPA--EGANVELVVPADPLIVDGVGHITMRVHERGSG 225 Query: 221 LTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIE---WHDNNHVFMTGEAKK 273 T +CG+ A + A H A V++ GG L + D HV ++G A+ Sbjct: 226 ETLSCGTGA--AAAALAIRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAEL 283 Query: 274 EWEGKLDI 281 ++G + + Sbjct: 284 VFDGVVAL 291 >gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] Length = 298 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 120/310 (38%), Gaps = 52/310 (16%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 + ++ + FAK G N ++++ ++ +D + AL D ++ + Q Sbjct: 4 ISTASLPFAKGHGTENDFIIVNDPEGKISLDADRVAALCDRRAGIGADGLLRVIRAQALV 63 Query: 58 ------------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----------KR 94 A D F+ N DGS + CGNG R ++ ++ K Sbjct: 64 DNGEIDELAEGIAGDDWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKG 123 Query: 95 KSFTFETIRG----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN 150 SFT T G + A ++R +SV+MG P + + S +M Sbjct: 124 ISFTVGTRAGAKPVTVHACDSRRADVSVEMGVPEV------MGLSTAQM----------- 166 Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLE 208 F V MGNPH + L LA + F G+N+ + Sbjct: 167 AGFFYAGLGVDMGNPHLAATIPG-LDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDG 225 Query: 209 SLDLRTWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267 +++R +ERGVG T +CG+ A+V A +V+V + GG + +E ++ + Sbjct: 226 EVNMRVFERGVGETRSCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGS-TL 284 Query: 268 TGEAKKEWEG 277 G ++ G Sbjct: 285 RGPSEIVATG 294 >gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] Length = 265 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 103/284 (36%), Gaps = 34/284 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K + GN L+++ + + AI D + + + IR Sbjct: 1 MQFVKADACGNDFLIVEGKAD----AALAIALCQRHTGVGADGVEFLE--KTGPHSGTIR 54 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISV---- 118 ++N DGS + GNG RCV ++ + T T G + Sbjct: 55 LVNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMAT 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DL 175 MG P + ++ L + VV GNPH + V+ + Sbjct: 115 GMGVPTVRHGMVKLPQG-----------------ITVEGSVVHTGNPHFVIEVQSGDFTV 157 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +D G + HP F N+ ++ +R +ERGVG T + G+ CAS A Sbjct: 158 QGHDWREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAA 217 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + + + V GG +EW + +TG A+ +G+ Sbjct: 218 TIAAARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261 >gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] Length = 299 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 109/302 (36%), Gaps = 40/302 (13%) Query: 9 AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD---------- 57 K GN +V +D G ++ + D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG R + F + + F T G+ V Sbjct: 68 VCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D +G + ++ S+ D D + + V MGNPH + Sbjct: 128 TSLGDVP---ALGNDVFQVEM----GSWKCGDFDGYEVTIPGTAGSARGTFVDMGNPHVV 180 Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGV 219 +ED +L+ K P N+ R+ + S +R ERG Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVRIDEQSEGDNEGSATMRVNERGC 240 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G T +CG+ CA+ + + ++ + GG L ++ D++ V +TG A GK+ Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDDD-VKLTGSATIV--GKI 296 Query: 280 DI 281 ++ Sbjct: 297 EL 298 >gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 292 Score = 186 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 48/306 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55 + F K +G GN ++ ++T + AL D + Sbjct: 4 LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAA 63 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108 +D + F+ N DGS + CGNG+R FL ++ T G+ Sbjct: 64 LEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGVRDV 123 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + G VD+G L PL R+ D R + +GNPH + Sbjct: 124 QRSGSG-FQVDLGRWELAGGE-PLVRAKD-------------LQVARPGLGIDVGNPHVV 168 Query: 169 FFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220 + ED+L DLA L P G N+ + + +R ERG G Sbjct: 169 VALSSEDELAEADLAFV-PQLDPEPA--AGANVELVVPADPLVVDGVGHITMRVHERGSG 225 Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE---WHDNNHVFMTGEAKKEW 275 T +CG+ A A+ +A+ V++ GG L + D HV ++G A+ + Sbjct: 226 ETLSCGTGAAAAALATRHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELVF 285 Query: 276 EGKLDI 281 +G + + Sbjct: 286 DGVVAL 291 >gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 308 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 109/289 (37%), Gaps = 17/289 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALS-TDDNTHFDQIML-IHDFQDA 58 M DF K + +GN L++D RG +A+ L D ++ D Sbjct: 1 MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENR- 112 A +RI N DGSE GNG+R +L R+ FT T G + Sbjct: 61 GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120 Query: 113 -DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG + V MG GP + + + + + G PH + Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGAGPGDEVTVTDLHL---GVPHTVVL- 176 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D + + G LA HP EG N+ RV +LD+ WER G A GS ACA Sbjct: 177 RDAIDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAGPVPASGSGACA 236 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + V+V+M GG + + + + G A++ G L Sbjct: 237 AAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVLS 285 >gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19] gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19] Length = 279 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 50/299 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + F K+ G N +++D ++ D D ++ I + Sbjct: 1 MQFWKVHGARNDFVLVDETEEEVVPESDKPDFARWACDRRSGVGADGVVFI---RSDPPS 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGN RCVV+++T T+ G + G I+V++ Sbjct: 58 VEMRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRVEVQG-GWIAVEVP 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E + + + V G PH + E D + Sbjct: 117 EAEIK-------------------------KVVELGYEVDAGVPHFVRLTERD----PIH 147 Query: 182 SFGNLL-AKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 FG L +FSE GVN++ A S++ L +RT+ERGVG T ACGS A+ + Sbjct: 148 DFGGLTDEAKTIFSEYEPKGGVNVTYAAP-SVDELRVRTFERGVGWTPACGSGVVAASLV 206 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 + VSV+ GG L + D + G A+ ++G+L G W ++N D + Sbjct: 207 YSEIFGPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGELR---GDW-RENTDHQ 259 >gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17] gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17] Length = 311 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 20/292 (6%) Query: 6 VDF--AKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDN-THFDQIMLIHDFQDASV 60 + F K G GN +ID R + A AL+ D ++L+ Sbjct: 1 MRFAIVKCHGSGNDFPMIDARALSLSEAEWAGVARALADRAGPVGGDGLLLLVPGDH-HA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---GSIS 117 + + + N DGSE ++C NG+RCV R + + T A + D G + Sbjct: 60 EFGMVMRNSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYT 119 Query: 118 VD--MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V G L P+ + D++ D + F V+M NPH + FVE + Sbjct: 120 VRETAGPAGLSTAAWPIHGAPDRLVEDVLPMLDRARRFT----AVTMPNPHLVHFVE-TV 174 Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 +L G + P + N+S V ++L +RT+ERGVGLT +CGSA AS Sbjct: 175 DEAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAASTY 233 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+ + + V GG + ++ V ++G A EW G +++ G Sbjct: 234 AACLTGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285 >gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4] gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4] Length = 319 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 104/301 (34%), Gaps = 42/301 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLI--------- 52 + + F K G N +++ N+ + AL D I+ I Sbjct: 20 TDGIAFLKGHGTLNDFVILPDDHAELNLDETLVRALCDRRGGIGADGILRIATAGALVDR 79 Query: 53 -----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG- 104 D F+ N DGS + CGNG+R L T R + T G Sbjct: 80 GVLPALPDGVDPADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGP 139 Query: 105 ---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 +V++ D + VDMGEP L L S ++ F V Sbjct: 140 RPATIVSRSGDDAVVRVDMGEPRL------LGLSSAELGGRTFA-----------GVAVD 182 Query: 162 MGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 MGNPH + D L F GVN+ IA + + +R ERG Sbjct: 183 MGNPHLACVVPGLDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGA 242 Query: 220 GLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ +V A + + V V + GG + + D +TG + G+ Sbjct: 243 GETMSCGTGIVATAVAALADAGRGSGDVVVAVPGGEVEVHLADGGS-TLTGPSALVASGR 301 Query: 279 L 279 Sbjct: 302 F 302 >gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] Length = 299 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 107/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF------------ 55 K GN +V + T+D I L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 Q + F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 AVQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+MGE + + D + + + V MGN Sbjct: 128 RGNVKPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGNDGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRTW 215 PH + +ED + +L+ K +P N+ R+ ++ +R Sbjct: 175 PHVVAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ + KT + + GG L ++ D + V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDED-VKLTGSATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 172 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 4/165 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 G+P IP + D D G ++ V+MGNP Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNP 165 >gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] Length = 290 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 64/296 (21%), Positives = 110/296 (37%), Gaps = 28/296 (9%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57 + + F K G N +++ ++T + + L D ++ + + Sbjct: 2 TRIHFTKGHGTQNDFVLVPDESGELDLTPEQVAYLCHRHAGIGADGVIRVVRTANVPEVA 61 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 F+ N DGS + CGNG R +L SR + F T G+ Sbjct: 62 HLAPQATWFMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMV 121 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G +VD+G+ L R D + + P+ L L +GNPH + Sbjct: 122 AVPRGW-AVDLGQWRLARAEEAERRGMDSVVQVHGSPDPLPALSL------DLGNPHTVV 174 Query: 170 FVEDDLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GS 227 + ++ L S + HP +G N+ + +R ERG G T +C Sbjct: 175 ALPPSVHLSALDLSDAPHIDPHP--EQGSNVEFVHAIEHAHIGMRVHERGSGETRSCGTG 232 Query: 228 AACASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 AA A++ + V V +LGG L + V ++G A +G++D+ Sbjct: 233 AAAAALATWWWGGQPADQVDWRVDVLGGTLGVHI-KGTEVALSGPAVLVADGEIDL 287 >gi|315637930|ref|ZP_07893116.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21] gi|315481965|gb|EFU72583.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21] Length = 249 Score = 184 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 99/273 (36%), Gaps = 32/273 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + G N + A + + D +++I + D Sbjct: 1 MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F S F + G++ A + G + V +GE Sbjct: 58 FYNKDGSRAAMCGNGSRAAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG-VEVVLGEAR 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ F + G PH + F E+ + +D + Sbjct: 117 --------------DVKEPFEFEGRVWQYC------DTGVPHLVHFCEN-IEEFDKKTC- 154 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L K N++ A++ + + +RT+ERGV T ACG+ A + K Sbjct: 155 QILRK----KYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAYLQKKLK 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V + G L + ++ G+ K +E Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243 >gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923] gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2] gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150] gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023] Length = 275 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P DWK Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDMTLP--DWK-- 121 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 K +R H+ P F + G PH + FV DL + +G+ L H Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 F EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255 >gi|57505555|ref|ZP_00371482.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195] gi|57016102|gb|EAL52889.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195] Length = 249 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 100/273 (36%), Gaps = 32/273 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + G N + A + + D +++I + D Sbjct: 1 MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F S F + G++ A + G + V +GE Sbjct: 58 FYNKDGSRAAMCGNGSRVAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG-VEVVLGEAR 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ F G + G PH + F E+ + +D + Sbjct: 117 --------------DVKEPFEFGGRVWQYC------DTGVPHLVHFCEN-IEEFDKKTC- 154 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L K N++ A++ + + +RT+ERGV T ACG+ A + K Sbjct: 155 QVLRK----KYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAFLQKKLK 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V + G L + ++ G+ K +E Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243 >gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] Length = 277 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 109/295 (36%), Gaps = 42/295 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + D R ++ +AI A+ + D ++++ Q+ D Sbjct: 1 MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQE-EADV 59 Query: 63 FIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + N DG+ CGN C ++ T G++ ++ + Sbjct: 60 RVHYYNSDGTAADLCGNATLCSTAISAQW--GITSASGMRLATGAGLINSRID------- 110 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 G P + + I R I P R F V+ G PH + E D Sbjct: 111 --GLPAIALQPI-------TDIRPDMPIAPATAQGRRVGFAVA-GIPHLVILCE-DADAV 159 Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+A G L +H G N++ S RT+ERGV G T ACG+ A A+ V Sbjct: 160 DVAGAGPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAVLL 219 Query: 237 GCLHKTN-RAVSVKMLGG-GLLIEWH----------DNNHVFMTGEAKKEWEGKL 279 ++ +++ G + ++ + + GE + + G++ Sbjct: 220 RSWGLSDGATTTIRTSSGRDVEVDLEPLTAPDGRSLEGFRPTLRGEGRVVFRGEI 274 >gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] Length = 330 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 61/309 (19%), Positives = 99/309 (32%), Gaps = 41/309 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----------Q 56 K G N +++D R ++T + L+ D ++ + Sbjct: 23 TKGHGTQNDFVLLDDRDGLLDLTPALVRELADRRAGLGGDGVIRLVRSAHLPEGAALLAD 82 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAK--- 109 F+ N DGS + CGNG+R V F T G+ + Sbjct: 83 VPDATWFMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLGTRAGVRRVRRVP 142 Query: 110 ----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 +VDMG L + FD + +R V +GNP Sbjct: 143 VPDGLPDAVWYAVDMGRWYLPGGEDAVRDGFDA------QVAVAGLADVRPALGVDVGNP 196 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWE 216 H + + D A P+ G N+ + + +R E Sbjct: 197 HTVLALPGP-EELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVHE 255 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 RGVG T +CG+ ACA+ +A V + GG + + + HV + G A Sbjct: 256 RGVGETRSCGTGACAAALAVRTWAGAGAPDVWLVDVPGGTVRVTALSDGHVELAGPAVLV 315 Query: 275 WEGKLDIKT 283 +D+ Sbjct: 316 ATATVDLAA 324 >gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH] gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH] Length = 242 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 41/270 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 +K GN ++ D + A + D +++I + D + N Sbjct: 4 SKYSASGNDFVIFHAFLKKDR-SEIAKILCDRQNGVGADGLIVILPHE--QYDFEWQFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE + CGNG R + + + K F TI G++ A+ + D Sbjct: 61 ADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAEVDGD-------------- 106 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 ++ + K+ ++ + + G PH + DD+ +++ L Sbjct: 107 -IVESQLTEHKIIKE-----------VGEWKLFDTGVPHLVKI--DDINSFNIEEARKLR 152 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 +H N+++A V +L +RT+ERGV T ACG+ CAS + + V Sbjct: 153 YEH-----NANVNVAEVKD-GNLYVRTYERGVEDETLACGTGMCASFLFAREQGLVGNEV 206 Query: 247 SVKMLGG-GLLIEWHDNNHVFMTGEAKKEW 275 +V G L I+ NN ++ G+ K + Sbjct: 207 TVYPKSGEELHIK-LKNNRLYFKGKVKNTF 235 >gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] Length = 303 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 112/317 (35%), Gaps = 58/317 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 V F K N +++ + + + A+ D I+ + Sbjct: 4 VPFLKGHATRNDFVILPDHDDELELDAALVRAICDRRRGLGADGILRVVAVPADDAPVSS 63 Query: 53 ------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94 Q A+ F+ N DGS + CGNG+R R+L Sbjct: 64 AGATADAAAGRPPQPSAGRPPQPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLE 123 Query: 95 K--SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152 + F T G + G ++ + P L R + D + V Sbjct: 124 EAGRFLVGTRIGPVPVDVPPAGDVTAWLPAPEL--------RGGGRARFDGRMLEGVR-- 173 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212 VS+GNPH + V D L D + +L F +G N+ + + L + Sbjct: 174 -------VSVGNPHLVCVV-DTLADVDF-TRAPVLDSDE-FPDGANVEVVEIERPGVLRM 223 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMT 268 R +ERGVG T +CGS ACA + + R + + GG L I + D + V + Sbjct: 224 RVYERGVGETWSCGSGACAVAAVAEGAERIPRPADGWWRIVVPGGELRIRF-DGDRVALA 282 Query: 269 GEAKKEWEGKLDIKTGK 285 G A EG+L + + Sbjct: 283 GPAVVVAEGRLHLAALE 299 >gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX] gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276] gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s] gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70] gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s] gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1] gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX] gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768] gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222] gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074] gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301] gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC] gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC] Length = 275 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P DWK Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLP--DWK-- 121 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 K +R H+ P F + G PH + FV DL + +G+ L H Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 F EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255 >gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] Length = 297 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+MGE + + D + + V MGN Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215 PH + +ED + +L+ K P+ N+ RV ++ +R Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ + KT + + GG L ++ D++ V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] Length = 297 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + ++D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPSADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+MGE + + D + + V MGN Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGAEGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215 PH + +ED + +L+ K P+ N+ RV ++ +R Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ V KT + + GG L ++ D++ V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGVV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99] gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99] Length = 290 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 49/311 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52 + FAK G N +++ ++T+ + AL D I+ ++ Sbjct: 1 MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60 Query: 53 HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 H D D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++VDMG+ +K+ +G + V +GN Sbjct: 121 TVHHADQTHADVTVDMGKA-------------NKLGPGEAVVGGRR----LSGVAVDVGN 163 Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH + L D+ + + H F EGVN+ + + + +R ERGVG Sbjct: 164 PHLACLDPGLTPEQLAALDVGA--PVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGVG 221 Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+V A + ++V++ GG + + D + + G + G++ Sbjct: 222 ETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI 280 Query: 280 DIKTGKWIKKN 290 + +W + Sbjct: 281 ---SEEWWRDQ 288 >gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 60/322 (18%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52 M F+K G N +++ ++ + LS D ++ I Sbjct: 1 MPEQTTPFSKGHGTENDFILLPDFDADIDLDPALVRVLSDRRAGLGADGVIRIARTEALI 60 Query: 53 --------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRK 95 + + + F+ N DGS + CGNG R +L + Sbjct: 61 DKGIIAREAVGESGDGAPENTPEWFMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSP 120 Query: 96 SFTFETIRGILVAKE-------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 F+ T GI + I+VDMG+ + + +S DR RF Sbjct: 121 KFSIGTRAGIKRLTVVNPAQTTDSSARIAVDMGQVGI------IGQSVAAFDRQRFA--- 171 Query: 149 VNHLFLRNPFVVSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT- 205 + +GNPH + DD +L + F G N+ + Sbjct: 172 --------GVGIDVGNPHLACVIPDLDDAGLRELPLHLKPVLDEEFFPHGANVEVLTPLR 223 Query: 206 ------SLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIE 258 ++ +R ERG G T +CG+ A+ VA+ + + V V + GG + + Sbjct: 224 ADDSRDGDGTVSMRVHERGSGETRSCGTGTVAAAVAALADRGQVDGTVHVVVPGGEVTVT 283 Query: 259 WHDNNHVFMTGEAKKEWEGKLD 280 D + G + G ++ Sbjct: 284 IKDEQ-ATLEGPSVIVASGTIN 304 >gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] Length = 120 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + VE D+ ++ G +L +H F E N+ ++ +L LR +ERG G Sbjct: 1 MGNPHCVIQVE-DIKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T ACGS ACA+V ++ V V + GG LLIEW + N ++MTG A ++G + Sbjct: 60 TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119 Query: 281 I 281 + Sbjct: 120 L 120 >gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 141 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 3/139 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D+ H +I FDQ++L+ + VD Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDM Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120 Query: 121 GEPILDWKLIPLARSFDKM 139 G P IP + + Sbjct: 121 GPPRFVPDEIPFEAAEQAI 139 >gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] Length = 290 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 49/311 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52 + FAK G N +++ ++T+ + AL D I+ ++ Sbjct: 1 MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60 Query: 53 HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 H D D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++VDMG+ +K+ +G + V +GN Sbjct: 121 TVHHADQTHADVTVDMGKA-------------NKLGPGEAVVGGRR----LSGVAVDVGN 163 Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH + L D+ + + H F EGVN+ + + + +R ERGVG Sbjct: 164 PHLACLDPGLTPEQLAALDVGA--PVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGVG 221 Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+V A + ++V++ GG + + D + + G + G++ Sbjct: 222 ETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI 280 Query: 280 DIKTGKWIKKN 290 + +W + Sbjct: 281 ---SEEWWRDQ 288 >gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8] gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] Length = 297 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+MGE + + D + + V MGN Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215 PH + +ED + +L+ K P+ N+ RV ++ +R Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ + KT + + GG L ++ D++ V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] Length = 300 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 117/311 (37%), Gaps = 54/311 (17%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIM----------- 50 S + F K G N +++ R +T + AL D ++ Sbjct: 4 SPALAFVKGHGTQNDFVILPDRQAQIELTEELTAALCDRQRGLGADGVLRVATAGSLVAE 63 Query: 51 -LIHDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRG- 104 ++ D VD F+ N DGS + CGNG+R F + FT + G Sbjct: 64 GVLERLPDGVSGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGA 123 Query: 105 ---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + + + D +SV MG +L+ + + + + V Sbjct: 124 RPVRIHSADETDAEVSVSMGPVVLEGAG-RVGIAGRTLTGE----------------AVD 166 Query: 162 MGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------S 209 +GNPH V+ DL DL + L F G N+ I + Sbjct: 167 VGNPHLACVVDGLTVADLAGLDLTTGAEL--DAAQFPHGANVEILTPLTAASDGGSADFH 224 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268 +R +ERGVG T +CG+ A+ A+ + + AV++ + GG +L+ D + V + Sbjct: 225 AHMRVFERGVGETRSCGTGLVAAAAAALSGAGRESGAVAITVPGGDVLVTVADGSAV-LR 283 Query: 269 GEAKKEWEGKL 279 G ++ G+L Sbjct: 284 GPSRLVARGEL 294 >gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68] gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68] Length = 297 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+MGE + + D + + V MGN Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215 PH + +ED + +L+ K P+ N+ RV ++ +R Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ + KT + + GG L ++ D++ V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGIV--LQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] Length = 275 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P DWK Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLP--DWK-- 121 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 K +R H+ P F + G PH + FV DL + +G+ L H Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDAGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 F EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255 >gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 212 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ G Q CGNG RCV +L + F ++ + +V+MG Sbjct: 1 MRM----GPAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMG 56 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ + + IPL+ + ++ + LR VSMGNPHA+ V D + + Sbjct: 57 LPVFEPERIPLSGFPNACAE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVE 111 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 112 RIGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGR 171 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R V V + GG L ++W V ++G A+ ++G Sbjct: 172 VGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 209 >gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010] gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010] Length = 299 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 62/306 (20%), Positives = 100/306 (32%), Gaps = 50/306 (16%) Query: 9 AKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56 K GN + +D G + + D ++ + Q Sbjct: 8 TKAHATGNDFIAYLDSDGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQVA 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108 D + F+ N DGS + CGNG R + F + S + F T G+ Sbjct: 68 ACDDGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKTL 127 Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + D VDMG S+ + D D F + V M Sbjct: 128 RPLGDVAPYGRDVFRVDMG-------------SWRRGDLDAFTVTIPGTPGAARGTFVDM 174 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARV------TSLESLDLR 213 GNPH + +ED + +L+ P+ N RV +R Sbjct: 175 GNPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMR 234 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 ERG G T +CG+ CA+ + + + + GG + ++ + V +TG A Sbjct: 235 VNERGCGETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATL 292 Query: 274 EWEGKL 279 + L Sbjct: 293 VADVTL 298 >gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] Length = 299 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 62/306 (20%), Positives = 100/306 (32%), Gaps = 50/306 (16%) Query: 9 AKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56 K GN + +D G + + D ++ + Q Sbjct: 8 TKAHATGNDFIAYLDSDGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQVA 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108 D + F+ N DGS + CGNG R + F + S + F T G+ Sbjct: 68 ACDDGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKTL 127 Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + D VDMG S+ + D D F + V M Sbjct: 128 RPLGDVAPYGRDVFRVDMG-------------SWRRGDLDAFTVTIPGTPGAARGTFVDM 174 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARVT------SLESLDLR 213 GNPH + +ED + +L+ P+ N RV +R Sbjct: 175 GNPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMR 234 Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 ERG G T +CG+ CA+ + + + + GG + ++ + V +TG A Sbjct: 235 VNERGCGETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATL 292 Query: 274 EWEGKL 279 + L Sbjct: 293 VADVTL 298 >gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] Length = 314 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 115/312 (36%), Gaps = 53/312 (16%) Query: 4 SMVDFAKMEGIGNKILV---IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S + F K G N +V +D + I D + A D + + Sbjct: 18 STLLFIKAHGTENDFVVLIDVDDQLEQLGILDDDLVASLCDRRAGVGGDGFLRIVSSDAH 77 Query: 61 DA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110 DA F+ N DGS + CGNG+R L ++ + + F +T G+ Sbjct: 78 DAQGANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHITI 137 Query: 111 N----------RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 + + V MG P+ + R F V Sbjct: 138 HSLTGEDPNGSTHAVVEVGMG---------PVGVTGVSTGR--------MGDFEFAGLGV 180 Query: 161 SMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD------L 212 +GNPH A+ + +LA H F EGVN+ I VT E+ D + Sbjct: 181 DVGNPHLAAVIPGLTPVQLAELAFEQPAF-DHEFFPEGVNVEI--VTDPETADGDMRVGM 237 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEA 271 R WERGVG T +CG+ A+ A+ ++V + GG L I + + MTG + Sbjct: 238 RVWERGVGETRSCGTGTVAAARAALADAGVENGTITVDVPGGTLTIAIN-DGEATMTGPS 296 Query: 272 KKEWEGKLDIKT 283 G++ +K+ Sbjct: 297 VIVARGEVSLKS 308 >gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28] Length = 271 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 20/257 (7%) Query: 18 ILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQDASVDAFIRIINCD 70 ++D G SDA A L +++ D I+ + +A +R++N D Sbjct: 7 FSLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSSEAGPIGQMRVVNSD 66 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+R V R+L + ET++ IL K+ + S+ P ++ Sbjct: 67 GSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----ATSLGFDIPTYQVEIS 122 Query: 131 PLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFG 184 P+ + + + ++ V L F VS+ NPH I FV+ + D + Sbjct: 123 PVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLA 182 Query: 185 NLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT- 242 + L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A + L K Sbjct: 183 SYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDT 242 Query: 243 -NRAVSVKMLGGGLLIE 258 ++V GG + + Sbjct: 243 FETPLNVYNDGGRVQVT 259 >gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] Length = 321 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 110/323 (34%), Gaps = 57/323 (17%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------ALSTD 41 ++ + F K G N +++ +T + + A++ Sbjct: 11 TTGLRFTKGHGTHNDFVLVADTRGDLELTPEQVRTLADRRGGIGGDGVIRLAPTAAIARA 70 Query: 42 DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSF 97 DQ++ ++ + F+ N DGS + CGNG+R F S Sbjct: 71 GEAVADQVL----AEEPAAIWFMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTEL 126 Query: 98 TFETIRGILVAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 T G+ ++ + +VD+G L A D R P Sbjct: 127 ALGTRAGVKRVRKETGPDGVPWYAVDLGPWRLPGGAEAAAAGADAAVAVRGWAAP----- 181 Query: 154 LRNPFVVSMGNPHAIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---- 207 R V +GNPH + + D+L DL + P G N+ + Sbjct: 182 -RPALSVDLGNPHTVVALGSTDELARIDLTQAPQVAPPPP---HGTNVELVVPLEETTSG 237 Query: 208 ----ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS-----VKMLGGGLLIE 258 + +R ERGVG T +CG+ A A+ +A V++ GG L + Sbjct: 238 AETAGRVRMRVHERGVGETQSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVR 297 Query: 259 WHDNNHVFMTGEAKKEWEGKLDI 281 + H + G A+ + G+ + Sbjct: 298 VLTDGHAELAGPAQLVFSGETTL 320 >gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152] gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152] Length = 302 Score = 181 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 112/311 (36%), Gaps = 52/311 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 ++F K G N +V+ ++T + AL D ++ + Sbjct: 9 IEFTKGHGTENDFVVLPDEDVRLDLTPARVAALCDRQRGLGADGVLRVARAGALLRAGVL 68 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R +L R + + G Sbjct: 69 DALPAGVSDTDWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPV 128 Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G ++V MGE + + + L + +GN Sbjct: 129 TVHAAGPTHGEVTVAMGEVR-------------ALGASTATVAGWGYSGLG----IDVGN 171 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES-LDLRTWERGVG 220 PH V+ L LA ++ +F GVN+ I + +D+R +ERGVG Sbjct: 172 PHLAC-VDPTLTAEALAKLDLTVSPGYDPDLFPHGVNVEILTPLDEQRAVDMRVYERGVG 230 Query: 221 LTAACGSAACASV-----VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 T +CG+ A+ L + AV+V++ GG + + + ++ G + Sbjct: 231 ETRSCGTGTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVG-LEAGSAWLRGPSVLVA 289 Query: 276 EGKLDIKTGKW 286 G+L T W Sbjct: 290 TGRL---TADW 297 >gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D Sbjct: 2 VYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDT 61 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YDL G LL HP+F E N+SIA+VT +++ LR WERG GLT ACG+AACA+ VA+ Sbjct: 62 YDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAAS 121 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 L R+ + + GG L IEW ++HV MTG E EG ++ G Sbjct: 122 RLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSFAPELFAG 170 >gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] Length = 308 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 107/311 (34%), Gaps = 45/311 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------------LI 52 V F K G N ++I ++ + + L D ++ I Sbjct: 17 VPFVKGHGTQNDFVLIADPDAQLSLGVETVALLCDRRAGIGGDGLIRAARAGALRASGAI 76 Query: 53 HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 D D F+ N DG V+ CGNG R FL + R + T G Sbjct: 77 AQLPDGVGDEDWFMDYRNADGGVVEMCGNGARVFAHFLRALGLEPRGDYAIGTRAGAKRV 136 Query: 109 K----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SV+MG L P A S R F + +GN Sbjct: 137 RLLSFDGGGAEVSVEMGRVRLGG---PSATSVAGAPRGCF-----------SGTSADVGN 182 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH + + D L DL + +F EGVN+ S + LR ERGVG Sbjct: 183 PHLVCLAQGLDLDGLAALDLTRQPDY--DKAVFPEGVNIEFVVPHSPDKATLRVHERGVG 240 Query: 221 LTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ + A+ L + V V GG + + + G + G+ Sbjct: 241 ETKACGTGSVAAAAVVLAELGSGSGEVVVASPGGVVQAYVGPDGSAVLRGPSALVARGEF 300 Query: 280 DIKTGKWIKKN 290 D W+++ Sbjct: 301 D---KAWLQQR 308 >gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] Length = 304 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 110/305 (36%), Gaps = 49/305 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML--------------IH 53 K GN +V T+D + L D ++ I Sbjct: 16 TKTHATGNDFVVYADPEGRFEPTADEVRHLDDRHFGIGGDGVIRLAHPEDVSDLTAEQIA 75 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV---- 107 + ++ + F+ N DGS Q CGNG R + F R K +F T G+ V Sbjct: 76 ECREDGAEWFMDYRNADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL 135 Query: 108 --AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 + VDMG ++ + + D F + V MGNP Sbjct: 136 GSVEGLGRNVFRVDMG-------------AWKRGEVDAFEVTIPGTAGSARGTYVDMGNP 182 Query: 166 HAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWE 216 H + +ED +L+ K P+ N+ R+ + + + +R E Sbjct: 183 HVVAVIEDGKATLPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNE 242 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RG G T +CG+ CA+ V + ++ + GG L I+ D + V +TG+A Sbjct: 243 RGCGETLSCGTGLCATAVTLRAKTGID-HWTIAVRGGVLRIDVSDTD-VKLTGDATLV-- 298 Query: 277 GKLDI 281 G + + Sbjct: 299 GDITL 303 >gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 63/299 (21%) Query: 3 SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 + + F K +G GN ++ID R G + I + D +ML+ D ++ Sbjct: 2 TDQIKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQDTKN--F 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG E CGNG RC+V F + R+ F + G A+ + D +++ Sbjct: 60 DFEMVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAVDGPHQAQIH-DNQVNLQ 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M D++ +D +V++ G+PH I V DL + D Sbjct: 119 M-------------IDVDQITKDE------------TAYVLNTGSPHFIKIVS-DLKNMD 152 Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTA-------------A 224 + G + + + EG+N++ +RT+ERGV T + Sbjct: 153 VYKEGYTIRNNATYKNEGINVNFVE-KEENGYFVRTFERGVEDETLACGTGATAAAMAMS 211 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + + +++LGG L I + V++ G AK +EG + Sbjct: 212 -----------IEENMEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259 >gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500] Length = 343 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ V S + R W Sbjct: 212 NATLVSMGNPHCVVHLEN-VQDFPMDYYGEVIETHPIFPDKTNVEFVEVISSNQVRARVW 270 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG G T ACG+ ACA VVA KT+R +V M GG L +EW ++ +V+ +G + Sbjct: 271 QRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHMDGGSLEVEWRNEDEYVYHSGPSTTT 330 Query: 275 WEGKL 279 ++G + Sbjct: 331 FQGTV 335 >gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 297 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 106/307 (34%), Gaps = 52/307 (16%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110 F+ N DGS + CGNG R + F S F T G+ + Sbjct: 68 AVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++MGE + + D + + V MGN Sbjct: 128 RSNTKPYGANVFQIEMGE-------------WKVGETDAYEVTIPGTEGSARGTFVDMGN 174 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTW 215 PH + +ED + +L+ K P+ N+ R+ T + +R Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVN 234 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ERG G T +CG+ CA+ + KT + + GG L ++ D++ V +TG A Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291 Query: 275 WEGKLDI 281 + +D+ Sbjct: 292 AD--IDL 296 >gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 51/305 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +V+ ++T A+ AL D ++ + Sbjct: 1 MIFAKGHGTENDFVVLPDLDAALSLTPSAVAALCDRRRGLGADGVLRVTRAGAARAAGVF 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 ++ D ++ N DGS Q CGNG+R +L F ++ G Sbjct: 61 DRLPDGVSAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESADEFVVGSLAGPRPV 120 Query: 109 KENR-------DGSISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + ++V+MG+ + RSFD + Sbjct: 121 VLHGFDPARATTAEVTVEMGKANQFGAGSAVVGGRSFDGL-------------------A 161 Query: 160 VSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 V +GNPH + DDL D+A+ + +F +GVN+ + + ++ +R ER Sbjct: 162 VDVGNPHLACVGITADDLAALDVAA--PVSFDPALFPDGVNVEVLTASVDGAVSMRVHER 219 Query: 218 GVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GVG T +CG+ A+ VA+ + + V++ GG + + ++ ++ G + Sbjct: 220 GVGETRSCGTGTVAATVAALAHDGADTGTLRVRIPGGEVTVTVTESTS-YLRGPSVLVAR 278 Query: 277 GKLDI 281 G+LD Sbjct: 279 GELDP 283 >gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7] Length = 273 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FVE+ + L S Sbjct: 118 I-LDVIP------ALRCEKFFSSDSVLEHIPTFYLIDTGVPHLVGFVENKEW---LNSLN 167 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 168 ALELRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKATLIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92] gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92] Length = 249 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 31/275 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 +K GN ++ D + A + D ++++ + + N Sbjct: 4 SKYNANGNDFVIFHTFVSADR-SELAARLCDRYNGIGADGLIVL-KPDKDTNEIVWEFYN 61 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS CGNG R ++ + F T GI+ ++DG + V++ P + Sbjct: 62 SDGSHADMCGNGSRAAAQYAVDNQLCTNVFDLVTGSGIVSVNVSKDG-VEVELTSPKI-- 118 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 P++ F + G PH + FV DL +D+ + Sbjct: 119 ----------------LSNKPIDE-FGKIWHFYDTGVPHLVSFVS-DLNEFDIQTC---- 156 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N+++A++ + ++ +RT+ERGV T ACG+ A + +R Sbjct: 157 -RDLRYKYNANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASRCC 214 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V G L +N +F G+ K ++ +D+ Sbjct: 215 KVYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249 >gi|154149336|ref|YP_001405720.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] gi|153805345|gb|ABS52352.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] Length = 272 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 105/288 (36%), Gaps = 41/288 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--------------- 50 + +K GN ++ + N ++ A + D ++ Sbjct: 3 IKISKYNASGNDFVIFES-DSFHNYSNLARKICNRHKGIGADGLIVIIKNKSEISNKISS 61 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK 109 LI D + +D N DGS+ CGNG R F ++ K+ F T GI+ A+ Sbjct: 62 LILDLNNDKIDFAWDFYNSDGSKADMCGNGSRAAALFAYENKIANKNMKFLTGAGIINAE 121 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++ I++ +L + + + F G PH + Sbjct: 122 ICE-----INKHLAIVESELTKPVKKAENFSENGF-----------LWSFYDTGVPHLVT 165 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 FV+ DL +++ +A++ N++ A E L +RT+ERGV T ACG+ Sbjct: 166 FVK-DLNDFNIE-----VARNLRKKYNANVNFASFKD-EILRVRTYERGVEDETLACGTG 218 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 A + V V G +L +++ VF G ++ Sbjct: 219 MAACFITGVINFNLQNVVKVMPKSGEILYLRKNDDKVFFKGAVSHSFD 266 >gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] Length = 298 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 98/311 (31%), Gaps = 55/311 (17%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56 +M+ K G GN L+ N T + L D ++ + Q Sbjct: 6 TMI---KAHGTGNDFLIYCDADGSVNPTPREVRELCDRHFGLGADGLIRVTKPQFVDQVS 62 Query: 57 --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI 105 V F+ N DGS + CGNG R F + F T G+ Sbjct: 63 TEVADECGAKGVQWFMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGV 122 Query: 106 LVAKENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + VDMG S ++ I Sbjct: 123 KMLSSLGAQPGLGQHVFRVDMG-----------GWSMGELYAYTVSIPGQPGQAP--GTF 169 Query: 160 VSMGNPHAIFFVEDDLYHYDL-----ASFGNLLAKHPMFSEGVNLSIARVTS------LE 208 V MGNPH + +ED + + + P G N+ R+ Sbjct: 170 VDMGNPHVVAVIEDAQSTLPVIDDLDLTHAPKVE--PQLDHGQNVEFVRIDDMDERADQG 227 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268 +R +ERG G T +CG+ CA+ + N + + GG L + DN+ V +T Sbjct: 228 EATMRVYERGCGETLSCGTGLCATAITLRARTGIN-HWRITVAGGILDVAVTDND-VQLT 285 Query: 269 GEAKKEWEGKL 279 G A+ L Sbjct: 286 GNAELVATVTL 296 >gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 114/298 (38%), Gaps = 61/298 (20%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASV 60 + + F K +G GN ++ID R +++A D +ML+ D ++ Sbjct: 2 TDQIKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQDTKN--F 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG E CGNG RC+V F + + F + G A+ + D +++ Sbjct: 60 DFEMVYYNADGREGSMCGNGGRCIVAFARDLNIIGEDAAFLAVDGPHQAQIH-DNQVNLQ 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M D++ +D + +V++ G+PH I V DL + D Sbjct: 119 M-------------IDVDQISKDE------------SAYVLNTGSPHFIKIVS-DLKNMD 152 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + + + EG+N++ +RT+ERGV T Sbjct: 153 VYQEGYTIRNNATYKKEGINVNFVE-KEENGYFVRTFERGVEDET----------FACGT 201 Query: 238 CLHKTNR------------AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 + +++LGG L I + N H V++ G A +EG + Sbjct: 202 GATAAAMAIAIEENMEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259 >gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] Length = 479 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + L +G ++ HP+F + N+ V + + L +R W Sbjct: 347 NSTLVSMGNPHCVLHLEN-VEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRDLLRVRVW 405 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ A Sbjct: 406 QRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFISCPAITV 465 Query: 275 WEGKL 279 ++G + Sbjct: 466 FQGTI 470 Score = 74.4 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 15/106 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVI---------DMRGCHDNITSDAINA---LSTDDNTHFDQ 48 + S +++F KM G +V + + + I A + D Sbjct: 57 LSSIVLNFCKMHVRGQDFIVFHIDSLKYESNNQSFRPPVKGLQIIAQNLCDRESGVGADN 116 Query: 49 IMLIHDFQDA---SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 +++I + D + I N DGS ++C G+ CV +++ Sbjct: 117 VLVITPPPTEQLENADFQLLIFNSDGSLAENCSTGVSCVCKYIIDY 162 >gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 214 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+D + V +G Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 K+ + +F+++ + + + G PH + F ++ L F Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKK 208 >gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] Length = 271 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 105/291 (36%), Gaps = 37/291 (12%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ---- 56 + S F+K G GN +++ +T+ I L D ++ + Sbjct: 6 KGSATAFSKGHGTGNDFVILADPDNAAPLTNWQIADLCDRRSGIGGDGLLRVVRSAKHPE 65 Query: 57 ----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE 110 + + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 66 AVELSSEAEWFMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSC 125 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 D VDMG + + + + R + G VSMGNPH + Sbjct: 126 VGD-EFRVDMGPARFE-------GASEAIVDGRRYAG----------TRVSMGNPHLVCR 167 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V DD Y DL + +F GVN+ + +R ERGVG T +C Sbjct: 168 V-DDPYTLDLHKVPAV--DAQLFPTGVNVEFIT-GPANHITMRVHERGVGETRSC---GT 220 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +V A+ +V + GG L + + TG A EG ++ Sbjct: 221 GAVAAAAVALGGVGTCTVDVPGGTLTVTVSTDTTTL-TGPAVIVAEGHTNL 270 >gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 313 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 108/298 (36%), Gaps = 41/298 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59 + FAK N ++I ++T+D + L D ++ + Q Sbjct: 35 IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 94 Query: 60 VD---AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---- 110 VD F+ N DGS + CGNG+R +L + + FT T G Sbjct: 95 VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 154 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 D + VDMG + M D+ G V +GNPH Sbjct: 155 RDDAVVRVDMGPAA-------VTGISTCMIADQPFAG----------MGVDLGNPHLACV 197 Query: 171 VEDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTWERGVGLTAA 224 V ++A + F GVN+ + + ++ +R WERGVG T + Sbjct: 198 VPGLTPAALKNIALEAPVFDTA-FFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRS 256 Query: 225 CGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CG+ A+ A + V+V + GG + + + +TG ++ G + I Sbjct: 257 CGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 313 >gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] Length = 273 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 57/274 (20%), Positives = 108/274 (39%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ ++ D Sbjct: 1 MVFYKYSGSGNDFLIA-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSRN--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + + ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYE 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N+ L N ++++ G PH + FV++ + L Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFY 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G A+ Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDEIFYKGVARYI 258 >gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24] Length = 272 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + + ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N L N ++++ G PH + FV++ L Sbjct: 118 I----------LDTIPNLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A + + H Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFH 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G A+ Sbjct: 225 NTPKKATLIPKSNESLELSLKNDEIFYKGVARYI 258 >gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129] gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae] Length = 297 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 108/303 (35%), Gaps = 45/303 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI---------- 52 + + K G N ++I +T D I AL D ++ + Sbjct: 9 AQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSG 68 Query: 53 ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGIL 106 A+ D F+ N DGS Q CGNG R ++ + + F T G Sbjct: 69 VLAALPDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGAR 128 Query: 107 VAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 K + ++VDMG S + IG L V M Sbjct: 129 FVKVRSFDDSQAEVTVDMG-------------SAEVTGVSTCTIGSQQFAGLG----VDM 171 Query: 163 GNPHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 GNPH V +D+ + DL L F EGVN+ IA +R +ERG Sbjct: 172 GNPHLACVVPGYGQEDIENLDLVK--PLFDP-KFFPEGVNVEIATPLVQGVTHMRVFERG 228 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 VG T +CG+ A+ A+ V ++ GG + + +TG ++ G Sbjct: 229 VGETRSCGTGTVATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGY 288 Query: 279 LDI 281 +++ Sbjct: 289 INL 291 >gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] Length = 289 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 109/301 (36%), Gaps = 46/301 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 +DF+K G N +V+ ++ ++AL D I+ + Sbjct: 1 MDFSKGHGTQNDFVVLPDLDVRIDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---- 104 A+ D F+ N DGS + CGNG+R +L + F + G Sbjct: 61 GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 120 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++ + G ++V MG + L S +D F + +GN Sbjct: 121 VVHGYDATHGDVTVAMGT------IKDLGTSSATIDGRVFA-----------GVGIDVGN 163 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH E + L DL+ F GVN+ I + +R ERGVG Sbjct: 164 PHLACVDEHVTPEVLSSLDLSVSPGF--DPGFFPHGVNIEIVTPIHDGGVHMRVHERGVG 221 Query: 221 LTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ A+ + +V V++LGG + + + + G + G + Sbjct: 222 ETRSCGTGTVAAAAAALRYDGRDEGSVLVRVLGGEVQVTV-EGGKGSLRGPSVLVASGTI 280 Query: 280 D 280 Sbjct: 281 S 281 >gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] Length = 250 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K GN ++ D + A + D ++++ + D + Sbjct: 1 MQLVKYSASGNDFVIYHTFVKKDR-SELAKLLCHRHEGIGADGLIVLLPH--SRYDFEWQ 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE + CGNG R + S K F T+ G++ A D + + +P Sbjct: 58 FYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEAD-VVESQLTKPK 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + I + +++ G PH + FVE DL +D Sbjct: 117 ILDRKI--------------------EENGKRWWLIDTGVPHLVTFVE-DLNQFDKNESK 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L K+ N++ + LE++ +RT+ERGV T ACG+ A+ + + N Sbjct: 156 RLRNKY-----NANVNYGIIRDLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVVN 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V+V G L + + +N +F G KK +E K G W Sbjct: 211 PTVTVVPKSGEELQLRY-ENEKLFFKGRVKKVFE---TFKEGIW 250 >gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] Length = 292 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 113/302 (37%), Gaps = 44/302 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + +DF+K G N +V+ ++ ++AL D I+ + Sbjct: 2 ATMDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAG 61 Query: 53 ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-- 104 A+ D F+ N DGS + CGNG+R +L + F + G Sbjct: 62 VLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGAR 121 Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 ++ + G ++V MG + L S +D F + + Sbjct: 122 PVVVHGYDATHGDVTVAMGP------IKDLGTSSATIDGRVFA-----------GVGIDV 164 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGV 219 GNPH V++ + L++ ++ F GVN+ I + +R ERGV Sbjct: 165 GNPHLAC-VDEHVTAEVLSALDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGV 223 Query: 220 GLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ A+ + +V V++LGG + + + + G + G Sbjct: 224 GETRSCGTGTVAAAAAALKFDGRDEGSVLVRVLGGEVQVTV-EGGEGSLRGPSVLVANGT 282 Query: 279 LD 280 + Sbjct: 283 IS 284 >gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] Length = 324 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 102/323 (31%), Gaps = 72/323 (22%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G GN +V + +++ + AL + D + + F+ N Sbjct: 14 KAHGCGNSFVVATDADDSHDPSAEEVRALCSQAFGIGADGFI---RCVRSGGAWFMDYRN 70 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKE------------- 110 DGS+ + CGNG+R V L +S T G + Sbjct: 71 ADGSKAEMCGNGVRVFVDHLRREGLVRLAPGESLEVLTRGGTRTVELVAEAGGGAAEGCG 130 Query: 111 -----------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 VDMG R+ + + + Sbjct: 131 EGGGAAGCGAAEDGAQYRVDMGPAS-------------SPARETVKVSVPGIPGVLSGIW 177 Query: 160 VSMGNPHAIFFVED-------DLYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSL--- 207 V M NPH + V+ L D A + P EG NL + + Sbjct: 178 VDMPNPHTVVAVDSLAALEGAQLPAVDAARVAPQMRPAYEPEPREGTNLELVVDLTREGD 237 Query: 208 --ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLL------I 257 L +R ERGVG T ACG+ CA+ VA+ S V + GG + I Sbjct: 238 EVGHLRMRVLERGVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDIDGVI 297 Query: 258 EWHDNN----HVFMTGEAKKEWE 276 +W VF+TG A + E Sbjct: 298 DWDGPGLTGAPVFLTGPATRVAE 320 >gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464] Length = 273 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N L N +++ G PH + FV++ + L + Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + E++ L+T+ERGV T ACG+ A VA+ + Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYS 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T ++ L N+ +F G + Sbjct: 226 TPEKAALIPKSSESLELSLKNDEIFYKGAVRYI 258 >gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d] Length = 273 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 106/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N L N +++ G PH + FV++ + L + Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G + Sbjct: 226 TPKKAALIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 283 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 105/298 (35%), Gaps = 41/298 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59 + FAK N ++I ++T+D + L D ++ + Q Sbjct: 5 IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 64 Query: 60 VD---AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---- 110 VD F+ N DGS + CGNG+R +L + + FT T G Sbjct: 65 VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 124 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 D + VDMG + I V +GNPH Sbjct: 125 RDDAVVRVDMGPAAV-------------TGISTCMIADQPFA----GMGVDLGNPHLACV 167 Query: 171 VEDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTWERGVGLTAA 224 V ++A + F GVN+ + + ++ +R WERGVG T + Sbjct: 168 VPGLTPAALKNIALEAPVFDTA-FFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRS 226 Query: 225 CGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CG+ A+ A + V+V + GG + + + +TG ++ G + I Sbjct: 227 CGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 283 >gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16] Length = 273 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 15/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ + L + Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ L N+ +F G + G L Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYIGMGVL 263 >gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] Length = 289 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 107/298 (35%), Gaps = 42/298 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N +++ +T A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLTADLALTPAAVAALCDRRQGLGADGVLRVTTAGAARAAGVF 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DRLPEGVVEGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPV 120 Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 N ++V+MG+ L + +F N V +GN Sbjct: 121 VLNALAGVGADVTVEMGKANQ------LGVGAATVGGRQF-----------NGLAVDVGN 163 Query: 165 PH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + L ++ F +GVN+ + ++ +R ERGVG T Sbjct: 164 PHLACVDAAMSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGET 223 Query: 223 AACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +CG+ A+V A +++V++ GG +++ D N ++ G + G L Sbjct: 224 RSCGTGTVAAAVAALAHQGSQTGSLTVRIPGGEVVVTITDANS-YLRGPSVLVAHGDL 280 >gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30] Length = 273 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + + + G PH + FV++ + L + Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKATLIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908] gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018] gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017] Length = 273 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIA-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + + ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYE 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N L N ++++ G PH + FV++ L Sbjct: 118 I----------LDTIPNLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ H Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFH 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G A+ Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDEIFYKGVARYI 258 >gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99] gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99] Length = 273 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 107/274 (39%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L I + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFL-ITQSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + + ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N+ L N ++++ G PH + FV++ L Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ H Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFH 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G A+ Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDGIFYKGVARYI 258 >gi|319955792|ref|YP_004167055.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511] gi|319418196|gb|ADV45306.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511] Length = 255 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 103/279 (36%), Gaps = 38/279 (13%) Query: 9 AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K GN ++ D + + A D ++++ A D Sbjct: 4 TKYNANGNDFVIFHDNQKRDRH--ELAKLLCDRHKGVGADGMVVLIPH--AEYDFEWEFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGSE CGN R V + + F T G++ A+ N ++ DM EP + Sbjct: 60 NSDGSEATMCGNATRAVAHYAVEKGISVNDRAEFLTGAGVITAEVNGLYVVT-DMLEPKI 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + I +++ G PH + VE DL ++DL Sbjct: 119 LRRDI--------------------EEEGLQWWLIDTGVPHLVAEVE-DLENFDLEMARR 157 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 L K+ N++I V + + L LRT+ERGV G T ACG+ A V + K Sbjct: 158 LREKYD-----ANVNIYTV-AEDELRLRTYERGVEGETLACGTGMTACYVRAREEGKARD 211 Query: 245 AVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V G L +E+ + G+ K + +L + Sbjct: 212 LCIVFPRSGDELYLEYKE-GRYRFGGKVDKTFVAELTLD 249 >gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38] gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38] Length = 272 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 104/271 (38%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP R D + +++ G PH + FV++ L + Sbjct: 118 I-LDTIPALRCKKFFSSDSVL------ENIPMFYLIDTGVPHLVGFVKNKRLLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N+++A + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHEF---NANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470] gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470] Length = 273 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N L N +++ G PH + FV++ + L + Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T ++ L N+ +F G + Sbjct: 226 TPEKAALIPKSSESLELSLKNDEIFYKGAVRYI 258 >gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] Length = 273 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 55/271 (20%), Positives = 108/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ + L + Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] Length = 273 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ L + Sbjct: 118 I-LDVIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEGLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2] Length = 329 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 113/318 (35%), Gaps = 49/318 (15%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57 F K G N +++ + + I L+ D ++ I Sbjct: 16 FIKGHGTQNDFVLLADDDSALEMHPETIAQLADRRSGLGSDGVIRIVRSASSGIPGAQEQ 75 Query: 58 --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK-- 109 A + F+ N DGS + CGNG+R L + + T GI + Sbjct: 76 AEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTVRTV 135 Query: 110 -------ENRDGSISVDM---GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + D + SV+ G W +I + + D + + R Sbjct: 136 LNPALGKQTGDATASVEQTLPGSAADSWYMIDMG-EWSLDDSEDVIVSTSGIEVPRPGMR 194 Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--------SLES 209 V GNPH + + + +L +L +L P+ +G N+ + + Sbjct: 195 VETGNPHTVVALAESAELESAEL-RDAPVL--DPVPPQGSNVEYIVMEPARSDVAGGEGA 251 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN----- 262 L +R +ERGVG T +CG+ ACA+ +A+ N V + GG L I N Sbjct: 252 LRMRVFERGVGETRSCGTGACAAAIAAHHWAGPNSPLQWRVDVPGGQLRIGITPNEDGTR 311 Query: 263 NHVFMTGEAKKEWEGKLD 280 V ++G A +G + Sbjct: 312 GSVTLSGPAVLVADGTIS 329 >gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702] Length = 292 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 48/304 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI---------- 52 S ++F K G GN +++ G ++T + + L+ D ++ I Sbjct: 2 SALEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAG 61 Query: 53 ---HDFQD-ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106 + A D F+ N DGS + CGNG+R L + T G Sbjct: 62 VIDEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRR 121 Query: 107 VAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + +SVDMG P++ L S + + +H V M Sbjct: 122 ELTVHAVAGTTADVSVDMGAPVV------LGESSATLAGETYH-----------GTGVDM 164 Query: 163 GNPHAIFFVE----DDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWER 217 GNPH V + L + G L P F GVNL + + +R ER Sbjct: 165 GNPHLACVVPGLSPEKLATLPV---GLLPEWDPAFFPAGVNLELVTAPVDGVVHMRVHER 221 Query: 218 GVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 GVG T +CG+ A+ VA+ + V V++ GG + + + + G ++ + Sbjct: 222 GVGETLSCGTGTVAAAVAALRSTGEETGQVRVRIPGGEVQVTVSSESS-ELRGPSQLLFR 280 Query: 277 GKLD 280 G ++ Sbjct: 281 GTVE 284 >gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 332 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 75/292 (25%), Positives = 114/292 (39%), Gaps = 22/292 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT----HFDQIMLIHDFQDAS 59 S + K G N I VID +D A++ + D + + D D + Sbjct: 2 SRLSITKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGT 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRDG 114 A+ N DGS CGNGMRC R L R +S+T T + + Sbjct: 62 AQAW--FFNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVR 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V++ + +A P H LR V+M N H + V D Sbjct: 120 QVAVELPPADFSPQEAIVADVASPFVGQLL---PAYHPALRT-TAVAMPNSHLVSVV-DS 174 Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + G+ +A F G N+S + + + +RT+ERG GLT +CGS AS Sbjct: 175 YDRADLVATGSRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSASR 234 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLD 280 L +AV ++ +GG + E + G A +E +LD Sbjct: 235 AVLSRLGLAEPGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYEVELD 286 >gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83] Length = 278 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 15/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ + L + Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ L N+ +F G + G L Sbjct: 228 KKAALIPKSNESLELSVKNDEIFYKGTVRYIGMGVL 263 >gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20] Length = 273 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+I + ++ A + + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLII-QSFKKKDFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N L N +++ G PH + FV++ L + Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T ++ L N+ +F G + Sbjct: 226 TPEKAALIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] Length = 247 Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 107/278 (38%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + +K GN ++ + A++ ++ D +++I + D Sbjct: 1 MQLSKYNASGNDFVIFHTFKSLNR-RELAMSLCDRFNSIGADGLIVILPSK--ECDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R + K+ +F+T GI+ A + D + V + P Sbjct: 58 FYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKASIDNDF-VEVALTAP- 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + F + + G PH + FV D+L +DL+ Sbjct: 116 -----------------KKLSEPFIEYGFEWSFY--DTGVPHLVTFV-DNLSKFDLSVCS 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L K+ N++ A + L++RT+ERGV T ACG+ AS K N Sbjct: 156 ELRKKY-----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFN 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V L +++ D ++ G+ K ++ + Sbjct: 211 PCLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSIS 247 >gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum] Length = 351 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 217 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335 Query: 275 WEGKL 279 +EG + Sbjct: 336 FEGSI 340 >gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] Length = 514 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E+ + + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 380 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498 Query: 275 WEGKL 279 +EG + Sbjct: 499 FEGSI 503 Score = 73.2 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 15/109 (13%) Query: 1 MQSSMVDFAKMEGIGNKILV--IDM----------RGCHDNITSDAINALSTDDNTHFDQ 48 + S ++ F KM G ++ ID R + + A + D Sbjct: 57 LSSVILKFCKMHVRGQDFIIFHIDNLRVEYNNSSFRPSIQVLQNIAQRLCDREQGVGADN 116 Query: 49 IMLIHDFQDA---SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94 +++ + D + I N DGS ++C G+ CV +++ + Sbjct: 117 TLVLTPPPNDKLNETDFQLLIFNSDGSIAENCTTGVSCVCKYIVDYNLK 165 >gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] Length = 241 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 99/270 (36%), Gaps = 41/270 (15%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN ++ D ++ A + D ++++ + + D + N Sbjct: 5 KYSASGNDFVIFHTFKKKDR-SNLAKKLCDRFNGIGADGLIVLLPHK--TYDFEWQFYNA 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGSE CGNG R + + F T G++ A+ + D I++ + Sbjct: 62 DGSEASMCGNGSRAAALYAYKYDLASSKMKFLTGAGVIEAEVDGD----------IVETQ 111 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 L P + K D G PH + D L ++++ Sbjct: 112 LTP-YKELGKFDEWELF---------------DTGVPHLVKL--DKLENFNINEC----- 148 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247 + + N++IA V L +RT+ERGV T ACG+ CAS + + ++ Sbjct: 149 RELRYKHNANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLKARKEGLIGDSIK 207 Query: 248 VKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276 V L I N ++ G K+ ++ Sbjct: 208 VYPKSKEELEIS-LKRNRLYFKGRVKETFK 236 >gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180] gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180] Length = 273 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L I + ++ A + D ++++ ++ D Sbjct: 1 MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSRN--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N+ L N ++++ G PH + FV++ + L Sbjct: 118 I----------LDTIPALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ H Sbjct: 168 TPELRALRHEF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFH 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G A+ Sbjct: 225 NTPKKATLIPKSNESLELSLKNDGIFYKGVARYI 258 >gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695] gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695] Length = 273 Score = 174 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FVE+ L + Sbjct: 118 I-LDVIP------ALRCEKFFSSGSVLEHIPTFYLIDTGVPHLVGFVENKEGLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] Length = 237 Score = 174 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 38/268 (14%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN +V D+ G N + L + D ++ + F+ N Sbjct: 5 KFTATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR--DGVIFVEKRD---GQFFMDYFNK 59 Query: 70 DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG+ CGNG R + +L +K F T G + K ++G + + M Sbjct: 60 DGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNG-VMIKM------- 111 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 P + K+ D F + F++++G PH + FV D++ D+ G L Sbjct: 112 ---PASNMPQKLTIDSF-----------SGFLLNVGVPHFVIFV-DNVETIDVNKIGKQL 156 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++ +V +++ +RT+ERGV T ACGS AS + + Sbjct: 157 RE----KLNSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYVFNKSNL--EKI 210 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 VK GG L + + ++ +++ G + Sbjct: 211 EVKARGGTLFVHFLNDG-IYLEGGVENV 237 >gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75] Length = 273 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ + L + Sbjct: 118 I-LDIIP------ALRCEKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +AS + T Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51] Length = 273 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPNIIESNLGNYQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N L N +++ G PH + FV++ L Sbjct: 118 I----------LDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 168 TLELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFY 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G + Sbjct: 225 NTPKKAALIPKSNESLELSLKNDEIFYKGAVRYI 258 >gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52] Length = 273 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N+ L N +++ G PH + FVE+ L + Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVENKEGLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + E++ L+T+ERGV T ACG+ A +AS + Sbjct: 169 LELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYN 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 226 MPKKATLIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A] Length = 273 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 108/276 (39%), Gaps = 15/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +IP + ++F + +++ G PH + FV++ L + Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A + + + T Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ L N+ +F G + G L Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYIGMGVL 263 >gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] Length = 309 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 105/306 (34%), Gaps = 48/306 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF-----------Q 56 K G GN L++ +T + ALS D ++ + Sbjct: 10 VKGHGTGNDFLLLADPEGALALTEADVAALSDRHRGLGADGVIRAVRSSAIADGASLLEE 69 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKEN 111 F+ N DGS + CGNG+R V FL + T G+L + Sbjct: 70 HPEAVWFMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIE 129 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 D +VDMG L FD +G R +++ NPH + + Sbjct: 130 TD-RYAVDMGRWSAPGGAEALEAGFDA------SVGVAGLDSPRPGLRLALPNPHVVVAL 182 Query: 172 ED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----------------LDL 212 ED L DL + P+ G N+ + + + + Sbjct: 183 EDVAQLESIDLTKPPRV---DPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRM 239 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGE 270 R ERGVG T +CG+ ACA+ +A V + GG L + +HV ++G Sbjct: 240 RVHERGVGETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGP 299 Query: 271 AKKEWE 276 A+ Sbjct: 300 AELVAR 305 >gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 278 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 100/283 (35%), Gaps = 36/283 (12%) Query: 10 KMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD----ASVDAFI 64 K G N ++ +D C + D ++ + +D ++ D F+ Sbjct: 13 KGHGTENDFVILVDTDNCLAPTPEEVAALCDRHAGIGADGLLRVVRARDINASSAADWFM 72 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS----ISV 118 N DGS + CGNGMR +L K K F T G + +SV Sbjct: 73 DYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADERTADVSV 132 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE----DD 174 +MGE + V V +GNPH + D Sbjct: 133 EMGEASVTG-----------------VSTCVLGQTTFAGLGVDVGNPHLACIIPTLTKDQ 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233 L + G + F GVN+ IA ++ +R ERGVG T +CG+ +V Sbjct: 176 LEALPI-QDGFAVDT-EFFPAGVNVEIATELVDGAVYMRVNERGVGETRSCGTGTVATAV 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 A + V+V +LGG + + D + G ++ + Sbjct: 234 AALADAGLADGTVAVHVLGGTVQVTVKDGKAA-LRGPSEIVFR 275 >gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100] Length = 316 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 114/318 (35%), Gaps = 59/318 (18%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI--------- 52 + M F K G N + I ++ D + ++ D ++ + Sbjct: 17 AGMTRFIKAHGTQNDFVFIVDPTVTVDLNEDRVRRIADRHAGIGGDGVIRVATAASLIDA 76 Query: 53 ---------HDFQDASV-----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKR 94 D ++ + F+ N DGS + CGNG+R L + Sbjct: 77 NVLDPNILQPDPENPRATIHEDEWFMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGGE 136 Query: 95 KSFTFE----TIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 F E T G + K + + +SVDMG P+ F++ Sbjct: 137 PKFPIEIGVGTRAGRKIVKIHEADAQQAKVSVDMGR--------PVVTGMSTASIGGFNL 188 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS--FGNLLAKHP-MFSEGVNLSIAR 203 + V MGNPH + + L LA G + F GVN+ +A Sbjct: 189 AGLG---------VDMGNPHLAAIIPN-LTAEKLAELPIGEKVTWDEEFFPTGVNVEVAT 238 Query: 204 VTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN 262 ++ +R ERGVG T +CG+ +V A K V V++ GG + ++ + Sbjct: 239 PLEDGAVHMRVHERGVGETRSCGTGTVATAVAALADAGKEFGTVVVRVPGGEVEVDITAD 298 Query: 263 NHVFMTGEAKKEWEGKLD 280 V +TG ++ G++ Sbjct: 299 TAV-LTGPSQIVARGEMS 315 >gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429] gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429] Length = 232 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 39/266 (14%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN ++ D+ + + D + + F+ N Sbjct: 5 KYTANGNSFILFDITDTSLTSNEKKELVIKKCQDR--DGALFVE---TKDGMYFMEYYNK 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS+ CGNG R + +L K F T GI+ K + I + M P++ K+ Sbjct: 60 DGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKIL-NEKILIKMPNPLVARKI 118 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 ++ + +++++G PH + FV DD+ H D+ + G + Sbjct: 119 ---------------------NVENFSGYLLTVGVPHFVTFV-DDIEHIDVKNIGKKIRN 156 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248 N++ S + +RT+ERGV T +CGS AS + V V Sbjct: 157 ----KLDANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV-----LNESKVKV 207 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274 GG L I ++ ++ G+ + Sbjct: 208 HTRGGILHIYTLNDGF-YLEGDVENV 232 >gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] Length = 302 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 111/306 (36%), Gaps = 47/306 (15%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIM----------- 50 S+ + F K G N +++ +I + + AL D ++ Sbjct: 4 STGLRFVKGHGTQNDFVILADPAADLDIDASLVAALCDRPRGIGADGLLRVARAGALVAA 63 Query: 51 -LIHDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105 ++ D D F+ N DGS + CGNG+R FL +R + FT + G Sbjct: 64 GVLEMLPDGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGG 123 Query: 106 LVAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + + ++V+MG+ +D F L V Sbjct: 124 RPVTVHSHDALSADVTVEMGQATVD-----------------FDAAVRIGDDLYVGTKVD 166 Query: 162 MGNPHAIFFVED-DLYH-YDLASFGNLLAKHPMFSEGVNLSI---ARVTSLESL--DLRT 214 +GNPH V D D+ + + + F G N+ + V L +R Sbjct: 167 VGNPHLACVVGDLDVDELAAVDFTAGVRLEAADFPHGANVELLTRPAVADDGVLTAHMRV 226 Query: 215 WERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 +ERGVG T +CG+ A+ A+ + + + + GG +L+ + G + Sbjct: 227 FERGVGETRSCGTGLVAAAAAAFAGRGEPGGDLRIHVPGGTVLVTIAATGT-RLRGPSML 285 Query: 274 EWEGKL 279 EG+L Sbjct: 286 VAEGEL 291 >gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32] Length = 273 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP + ++F + +++ G H + FVE+ + L + Sbjct: 118 I-LDTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVENKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|152993982|ref|YP_001359703.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1] gi|151425843|dbj|BAF73346.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1] Length = 248 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 36/271 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K GN ++ + H + + A + D ++++ + D N Sbjct: 4 TKYSANGNDFVIF-IAQEHADRSELAKKLCHRQNGVGADGMVVVLPHKK--YDFEWEFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126 DGSE CGN R V F + K F T G++ A N +S DM EP + Sbjct: 61 SDGSEADMCGNASRAVAHFAHEKGISKDGKAEFLTGAGVIRATINGLYVVS-DMVEPDIQ 119 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 I +++ G PH + +++++ +DL L Sbjct: 120 RDDIDENGE--------------------RWWLIDSGVPHLVA-IQENIDSFDLTEARRL 158 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 K+ N++I R ++L +RT+ERGV T ACG+ A + K Sbjct: 159 REKY-----NANVNICR-LDGDTLYVRTYERGVEDETLACGTGMVACYIRLHKEGKVPDQ 212 Query: 246 VSVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275 V V G L + + +N G+ K + Sbjct: 213 VKVHPKSGDELYVSY-ENGVYRFGGKVTKTF 242 >gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] Length = 277 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ + + A+ D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGS ++CGNG+R + R+L R + ET I ++D I+VD+G Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + P K D ++ + ++SMGNPH I + ++D + + Sbjct: 123 AHMLTE--PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTF-YEE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L ++ VN+ + V + L L T+ERG G T ACG+ A+V ++ + Sbjct: 180 MGRLSKRYD-----VNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQV 234 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N + V + GG L ++W N+H+ +G+ K G Sbjct: 235 LPNEIIKVYLPGGILEVKWDLNDHLLASGKTTKVCCGTY 273 >gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1] gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1] Length = 277 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 18/279 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ + + A+ D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGS ++CGNG+R + R+L R + ET I ++D I+VD+G Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + P K D ++ + ++SMGNPH I + ++D + + Sbjct: 123 AHMLTE--PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTF-YEE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L ++ VN+ + V + L L T+ERG G T ACG+ A+V ++ + Sbjct: 180 MGRLSKRYD-----VNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQV 234 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N + V + GG L ++W N+H+ +G+ K G Sbjct: 235 LPNEIIKVYLPGGILEVKWDLNDHLLTSGKTTKVCCGTY 273 >gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411] gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411] gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] Length = 288 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 110/303 (36%), Gaps = 47/303 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52 M++F K G N +V+ N+T D + L+ D ++ + Sbjct: 1 MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGIL 106 + F+ N DGS + CGNG+R L + K + F T G Sbjct: 61 LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGKVTVGEQFGIGTRAGRK 120 Query: 107 VAKENR-------DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + + + +SV+MG P + + +G + L Sbjct: 121 MVEVHELSGENQEHAIVSVEMGAP-------------EVLGVSTAQVGDLKVAGLG---- 163 Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWE 216 V MGNPH V + L L + F GVNL + ++ +R E Sbjct: 164 VDMGNPHLAAVVPNLTALELQKLPIDQQVQFDTEFFPAGVNLEVLTPLDNAGAVHMRVHE 223 Query: 217 RGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 RGVG T +CG+ A+V A V+V + GG + +E ++ V + G + Sbjct: 224 RGVGETRSCGTGTVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSV-LRGPSAIVA 282 Query: 276 EGK 278 G+ Sbjct: 283 WGR 285 >gi|257458717|ref|ZP_05623841.1| diaminopimelate epimerase [Campylobacter gracilis RM3268] gi|257443906|gb|EEV19025.1| diaminopimelate epimerase [Campylobacter gracilis RM3268] Length = 292 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 107/297 (36%), Gaps = 33/297 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA--SVDAF 63 + +K GN ++ + + A D D ++++ + ++ Sbjct: 1 MKISKYNASGNDFVIF-TDSVKADRSKLARELCDRRDGVGADGLIVVLPKFNGIEGINFE 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR--DGSISVDM 120 N DGS CGNG R V + + +S F + G++ + G++S M Sbjct: 60 WEFYNSDGSSADMCGNGSRAVCMYAYENFLAAQSMKFLSGAGVISGEIFGIFGGNLSESM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-------------NPFVVSMGNPHA 167 + + + F+ + V + R + + G PH Sbjct: 120 ---RGELRNVSFGEIFNLRPNAHALVANVEVMLTRPKRLGESFEEAGLTWYFYNTGVPHL 176 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGV-GLTA 223 + FV DL F +LA+ N++ A V S + L +RT+ERGV T Sbjct: 177 VTFVS------DLNEFDAVLARDLREKYNANVNYALVQSRLASKILKVRTFERGVEAETL 230 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 ACG+ A +A + V G L + D ++ G+ + ++G+ Sbjct: 231 ACGTGMAACFIAGVENMGLASDIRVIPASGETLNLRLGDGGKIYFRGDVRHTFDGEF 287 >gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] Length = 257 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 38/281 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-------FQDASVD 61 K GN ++ D + A + D ++++ + +D Sbjct: 4 TKYSANGNDFVIFHTFVKKDR-SLLAKKLCHRQNGIGADGLIVLLPKSKNEIGGDKSKID 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGSE CGNG R + + + + F T GI+ A + D +S ++ Sbjct: 63 FEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVLS-EL 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + +D++ G ++ +++ G PH ++F + D+ +D+ Sbjct: 122 TPPKI-------------IDKEILENG-------KSWWLLDTGVPHLVYFTK-DITKFDI 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 A L K+ N++IA + L +RT+ERGV T ACG+ A + Sbjct: 161 AEARELRDKY-----NANVNIAFIEGKN-LRVRTYERGVEDETLACGTGMAACFYRAYSE 214 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V G L ++ + G + + ++D Sbjct: 215 KVVGNDIEVYPTSGETLYLGVNDRTITFRGRVRSIFSAEID 255 >gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] Length = 249 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 98/274 (35%), Gaps = 32/274 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ AK GN ++ D + A + D ++++ + D Sbjct: 1 MLQIAKYCASGNDFVIFHAFEKADR-SQLARILCDRQNGIGADGLIVLVPHES--HDFEW 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R + + S F T G++ A D + D+ P Sbjct: 58 EFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVEGD-MVQSDLTPP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ + I + +++ G PH I F + D+ H+++ Sbjct: 117 VIVNQEIVESG--------------------MKWWLIDTGVPHLITF-DADIEHFNID-L 154 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L N++IA + +L +RT+ERGV T ACG+ AS + Sbjct: 155 ARTLRHR----YNANVNIASINLDGTLRVRTYERGVEDETLACGTGMAASFYRAVQERLV 210 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + V G L + + GE K +E Sbjct: 211 DENTKVFPKSGETLYLGFEEGVITFKGEVKGVFE 244 >gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1] gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1] Length = 282 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 104/297 (35%), Gaps = 51/297 (17%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD--------------ASVDAFI 64 + D G ++ + D ++ + QD + F+ Sbjct: 2 VYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLADCAAGQAEWFM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD------ 113 N DGS + CGNG R + F L R + F T G+ + + Sbjct: 62 DYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEGLGK 121 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 V+MG S+ + D D + + V MGNPH + +ED Sbjct: 122 DVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVIED 168 Query: 174 DLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAA 224 +L+AK P N+ R+ +R ERG G T + Sbjct: 169 AFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLS 228 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CG+ CA+ + + ++ + GG L ++ D++ V +TG A GK+++ Sbjct: 229 CGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 281 >gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100] gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100] Length = 249 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 102/273 (37%), Gaps = 32/273 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + + A + + D +++I D Sbjct: 1 MKFYKYCASGNDFVIF-ADSEKKDRSELAKILCNRYEGIGADGLIVIVPHD--RYDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 NCDGS+ CGNG R F +K+ + F T G++ + + D Sbjct: 58 FYNCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIKSFVDDD----------- 106 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ + S K ++ F R + G PH + FV DDL +D+ Sbjct: 107 ----IVEIKLSGIKDIKEAFEYKD------RIWQGCNTGVPHIVTFV-DDLSEFDIN--- 152 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L K N++ A+V E + +RT+ERGV T ACG+ A + K Sbjct: 153 --LCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLACGTGMGACFYLAYLNQKVK 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + +K L + +F G+ K +E Sbjct: 211 DDILIKPKSNESLYFRLEEEQIFFRGKVKCCFE 243 >gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula] Length = 221 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + + A+ + D ++ + D Sbjct: 73 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGID-G 131 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F++ R SFT T G +V + DG++ Sbjct: 132 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191 Query: 117 SVDMGEPILDWKLIPLARSFDKM 139 VDMGEP+L +P S +K+ Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214 >gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27] gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27] Length = 272 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L I + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N L N +++ G PH + FV++ L Sbjct: 118 I----------LDTIPALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKKLLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +AS + Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFY 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + + L N+ +F G + Sbjct: 225 NTPKKAILIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57] Length = 273 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L++ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN RCV F I IS+ + EP + Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182 + + D + R N L N +++ G PH + FV++ L + Sbjct: 109 IESNLGNYKILDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +H N++IA + + +++ L+T+ERGV T ACG+ A +A+ + Sbjct: 169 LELRALRHEF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYN 225 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 T + ++ L N+ +F G + Sbjct: 226 TPKKAALIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] Length = 329 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 26/291 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57 M+ ++ G N +++D + D + L+ T D ++++ Sbjct: 1 MIKLLRVHGSENSFILLDQEQLEIPMNLDQLIQLAIQVTNNQTGLLGGADGLLVVSSSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A V +++IN DGS CGNG+R V R+L + + F +T A + + Sbjct: 61 AGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTD----QADLHVGRVAT 116 Query: 118 VDMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171 + G P ++ P++ + + ++D+ PV + F V++ NPH I Sbjct: 117 IGNGLPTYQVEISPVSFNTKNLPMQIENQDKLFNAPVRDFDDQLLFSAVAVPNPHLIAID 176 Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 ++ L LA G+ L A +P F +GVN+S RV L ++T+ERGVG T ACG+ Sbjct: 177 NNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKK 273 A+ + L+ + + + GG + H + + G A Sbjct: 237 SATSLVWSLLNDGQTRLDEVNDIFNPGGMVKTRVNQIHGAYTIDLIGNATF 287 >gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12] gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12] Length = 272 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 21/274 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L I + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVIVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181 + D + R N+ L N +++ G PH + FV++ + L Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLN 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + Sbjct: 168 TLELRALRHAF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFY 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 225 NAPKKATLIPKSNESLELSLKNDGIFYKGIVRYI 258 >gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] Length = 311 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 102/316 (32%), Gaps = 63/316 (19%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---------- 55 FAK GN +++ ++ + + A+ D ++ Sbjct: 13 RFAKGHATGNDFVLVADPEAKLELSPEQVAAVCHRRFGIGADGLIRAVPTSLVPGYEEQF 72 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R +L + +SF + G+ Sbjct: 73 LDNPKAYWFMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEIT 132 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 DG +V++G L ++ RS D M + P ++MGNPH + Sbjct: 133 RLADG-YAVNLGPWGLIFEQEATERSIDSM------VKPRGWEQALPALSITMGNPHTVV 185 Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-------ESLDLRTWERGVG 220 + D L DL P+ G N+ + + +R +ERGVG Sbjct: 186 ALPDAQMLEELDLFQ---APEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVG 242 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-----------------HDNN 263 T +CG+ A A+ + + +W Sbjct: 243 ETLSCGTGA--CAAAAAVRYWARSTALIN--------QWAVTVPGGVVGVEFRSNEAGGE 292 Query: 264 HVFMTGEAKKEWEGKL 279 ++G A G + Sbjct: 293 DTILSGPADLVARGVI 308 >gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8] gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8] Length = 273 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 15/271 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKRDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP R + D + +++ G PH + FV++ + L + Sbjct: 118 I-LDTIPALRCKNFFSSDSVL------EHISTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + ++ L N+ +F G + Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258 >gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654] gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654] Length = 156 Score = 171 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 12/161 (7%) Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P W IPL++ D +P V MGNPHA+FFV DD+ D Sbjct: 1 MGHPQTMWDEIPLSKPMDTAHL----------PLDCDPMAVGMGNPHAVFFV-DDVGAVD 49 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + P+F + N+ A V S + + +R WERG G+T ACGS ACA+ VA+ Sbjct: 50 VEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAER 109 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T R V +++ GG L ++W D+ V+MTG ++ L Sbjct: 110 GLTERKVRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDATLT 149 >gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] Length = 285 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 107/304 (35%), Gaps = 48/304 (15%) Query: 12 EGIGNKILVI---DMRGCHD-NITSDAINALSTDD-NTHFDQIMLIHDF---QDASV--- 60 G N +V+ D G + + + + L D ++ + DA Sbjct: 5 HGTQNDFVVLPDPDGTGWPESRLDAAMVRRLCERRAGLGGDGVLRVVPSVHVPDAPAVLG 64 Query: 61 ------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK------RKSFTFETIRGILVA 108 + F+ N DGS + CGNG+R + L + T G Sbjct: 65 EALGRCEWFMDHRNADGSTAEMCGNGIRLFLHVLVTEGLVERTACADGIWVGTRGGPRRV 124 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG VDMG P +D F VSMGNPH Sbjct: 125 GATADGGYWVDMGPAR------PFGAGTAHLDGASF-----------PGRAVSMGNPHLA 167 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAAC-G 226 + D+ DLA+ + +F +GVN+ V + LR ERGVG T +C Sbjct: 168 VLTDVDVDTLDLATAPAV--DAALFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSCGT 225 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A A+ A V+V + GG L + + V ++G A G+L + +W Sbjct: 226 GACAAAWAALEAAGAATGTVTVDVPGGRLGVTVDEQTTV-LSGPAVVVATGELTV---EW 281 Query: 287 IKKN 290 ++ Sbjct: 282 LRAT 285 >gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 28/278 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + AK GN ++ + A D D +++I + D Sbjct: 1 MKIAKYSANGNDFVIFHDDKKEERY-ELAKTLCHRQDGIGADGLIVIVP--NDEYDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R + + + F T G++ A+ + S + + Sbjct: 58 FYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESEL 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++I FD N ++++ G PH + + D++ +D Sbjct: 118 TPPEIIETEIEFDG----------------HNWWLINTGVPHLVRYT-DNIKEFDTEE-- 158 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 A+ + N++I + +L +RT+ERGV T ACG+ A + Sbjct: 159 ---ARELRYVYNANVNIMYIED-GNLRVRTYERGVEDETLACGTGMAACFYRAYKEGNVQ 214 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V G L ++ + G KK +E + D+ Sbjct: 215 NNIEVYPTSGDTLYLGYNGKTITFKGRVKKTFETEWDV 252 >gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7] Length = 273 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 25/276 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K F + + + +I ++G Sbjct: 58 FYNSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYD 179 + IP + +F + +++ G PH + FV++ L + Sbjct: 118 I-LDTIP------ALKCKKFFTNDSVLASIPTFYLIDTGVPHLVGFVKNKGLLNSLDTLE 170 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 L + +H N++IA + + +++ L+T+ERGV T ACG+ A +A+ Sbjct: 171 LRTL-----RHDF---NANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACV 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + T + ++ L N+ +F G + Sbjct: 223 FYNTPQNATLIPKSNEFLELSLKNDEIFYKGAVRYI 258 >gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] Length = 311 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 109/306 (35%), Gaps = 47/306 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------L 51 + K G GN + + +T + + A D + L Sbjct: 14 LTLTKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKL 73 Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGIL 106 I + DA F+ N DGS + CGNG+R V +L ++ T G+ Sbjct: 74 IEEHPDAV--WFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGVK 131 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 +G ++DMG + + + + R +SMGNPH Sbjct: 132 TVARTEEG-YAIDMGPWSF------IHGDAAREGGEDCLVSARGLKTPRAGLSISMGNPH 184 Query: 167 AIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDLRTWE 216 + + E L DL S + P+ G N+ L+ ++ +R E Sbjct: 185 TVVMLGSEGKLDGLDLHSL-PQVNPAPV--NGTNVEFVVPVDLDVESGAHVGAIRMRVHE 241 Query: 217 RGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGE 270 RGVG T +CG+ ACA+ A+ + V + GG L + + D HV + G Sbjct: 242 RGVGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGP 301 Query: 271 AKKEWE 276 A+ Sbjct: 302 AQMVAT 307 >gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] Length = 311 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 47/304 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------L 51 + K G GN + + +T + + A D + L Sbjct: 14 LTLTKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKL 73 Query: 52 IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGIL 106 + + DA F+ N DGS + CGNG+R V +L ++ T G+ Sbjct: 74 LEEHPDAV--WFMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVK 131 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 +G ++DMG + + + + R +SMGNPH Sbjct: 132 TVARTEEG-YAIDMGPWSF------IHGEAAREGGEDCLVSARGLKTPRAGLSISMGNPH 184 Query: 167 AIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDLRTWE 216 + + D L DL S + P+ G N+ L+ ++ +R E Sbjct: 185 TVVMLGSDGKLDGLDLHSL-PQVNPAPV--NGTNVEFVVPVDLDVESGAQVGAIRMRVHE 241 Query: 217 RGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGE 270 RGVG T +CG+ ACA+ A+ + V + GG L + + D HV + G Sbjct: 242 RGVGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGP 301 Query: 271 AKKE 274 A+ Sbjct: 302 AQMV 305 >gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS] gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS] Length = 313 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 50/314 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA------ 58 V FAK G N +++ +T ++AL D ++ + + A Sbjct: 21 VQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 80 Query: 59 --------SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 + D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 81 ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 140 Query: 109 KENRDG-------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + ++V+MG+ L L + RF + Sbjct: 141 VLHGFDLAHRSRAEVTVEMGKVNL------LGSGSAVVGGRRF-----------TGLGID 183 Query: 162 MGNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 +GNPH V+ L +LA+ + F +GVN+ + ++ +R ERG Sbjct: 184 VGNPHLAC-VDTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERG 242 Query: 219 VGLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+ VA+ + V++ GG + + F+ G ++ G Sbjct: 243 VGETRSCGTGTVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATG 301 Query: 278 KLDIKTGKWIKKNE 291 +L G+W + ++ Sbjct: 302 EL---AGEWWQSHQ 312 >gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS] gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS] Length = 293 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 50/314 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA------ 58 + FAK G N +++ +T ++AL D ++ + + A Sbjct: 1 MQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 60 Query: 59 --------SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 + D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 120 Query: 109 KENRDG-------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + ++V+MG+ L L + RF + Sbjct: 121 VLHGFDLAHRSRAEVTVEMGKVNL------LGSGSAVVGGRRF-----------TGLGID 163 Query: 162 MGNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 +GNPH V+ L +LA+ + F +GVN+ + ++ +R ERG Sbjct: 164 VGNPHLAC-VDTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERG 222 Query: 219 VGLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+ VA+ + V++ GG + + F+ G ++ G Sbjct: 223 VGETRSCGTGTVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATG 281 Query: 278 KLDIKTGKWIKKNE 291 +L G+W + ++ Sbjct: 282 EL---AGEWWQSHQ 292 >gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] Length = 307 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 120/319 (37%), Gaps = 53/319 (16%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI----------- 52 MV FAK G N L+ +T + A+ D ++ + Sbjct: 1 MVSFAKGHGTQNDFLIFPDDLVSIELTESLVAAVCDRQRGLGADGVLRVARAGKLVDAGV 60 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRG 104 + D F+ N DGS + CGNG+R ++ + + T G Sbjct: 61 LTALPEGVKADDWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAG 120 Query: 105 ILVAKEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 + + R + V+MG+P + + IG N+ V Sbjct: 121 LRAVSIDELSRRHAVVGVNMGQP-------------EVLGLATAFIGSGNNALKFAGIGV 167 Query: 161 SMGNPHAIFFVED----DLYHYDLASFG----NLLAKHPMFSEGVNLSIARVTS-LESLD 211 +GNPH + L +L + G + A MF G+NL I +S+ Sbjct: 168 DVGNPHLACVMPGLSAAGLAELELEAAGSVAKPVRADEAMFPNGLNLEIVTPLDASDSVS 227 Query: 212 LRTWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH------ 264 +R ERGVG T +CG+ A++ A +T AV+VK+ GG + ++ H ++ Sbjct: 228 MRVIERGVGETRSCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVHKASNADGAFS 287 Query: 265 VFMTGEAKKEWEGKLDIKT 283 +TG + G ++++ Sbjct: 288 ATLTGPSVIHTLGDIELEA 306 >gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4] gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4] Length = 289 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 113/302 (37%), Gaps = 48/302 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53 +DF+K G N +V+ ++++ + AL D I+ + Sbjct: 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAAAGVL 60 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---- 104 + D F+ N DGS + CGNG+R +L R F + G Sbjct: 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRSTGLETRDEFVVGSRAGGKPV 120 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 I+ + + G ++VDMG L S +D F N + +GN Sbjct: 121 IVHSADGSAGEVTVDMGVVR------DLGTSAATIDGKVF-----------NGIGIDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219 PH V+ L L++ L P F GVN+ I ++D+R ERGV Sbjct: 164 PHLAC-VDAHLTAASLSAL--DLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ A+ + V V++ GG + + + G + G Sbjct: 221 GETRSCGTGTVAAATAALRFDGADSGEVKVRIPGGQVTVALS-GGRATLRGPSVLVASGN 279 Query: 279 LD 280 LD Sbjct: 280 LD 281 >gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567] gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567] Length = 312 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 115/307 (37%), Gaps = 48/307 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54 K G GN + + + +D I D + L+ + Sbjct: 17 TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNLLEE 76 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAK 109 DA F+ N DGS + CGNG+R V +L ++ T G+ + Sbjct: 77 HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +G ++DMG + + + H+ + R +SMGNPH + Sbjct: 135 RTEEG-YAIDMGPWSF------IHGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVV 187 Query: 170 FV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERG 218 + E L DL S + +P +G N+ LE+ + +R +ERG Sbjct: 188 MLGQEGKLDGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERG 244 Query: 219 VGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAK 272 VG T +CG+ ACA+ A+ + V + GG L + + D HV + G A+ Sbjct: 245 VGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQ 304 Query: 273 KEWEGKL 279 + +L Sbjct: 305 TVAKIEL 311 >gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] Length = 292 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 46/302 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60 + + FAK G N +++ +T+ + AL D ++ + A Sbjct: 2 AQMIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 61 Query: 61 ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL 106 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 62 VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPR 121 Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + + +SVDMG+ L + RFH V + Sbjct: 122 PVTCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDV 164 Query: 163 GNPHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 GNPH D L D+ + + F +GVN+ + ++ +R ERG Sbjct: 165 GNPHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERG 222 Query: 219 VGLTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+V A + ++V + GG +++ D F+ G + G Sbjct: 223 VGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARG 281 Query: 278 KL 279 L Sbjct: 282 DL 283 >gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CDC1551A] Length = 292 Score = 169 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 46/302 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60 + + FAK G N +++ +T+ + AL D ++ + A Sbjct: 2 AQMIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 61 Query: 61 ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL 106 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 62 VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPR 121 Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + + +SVDMG+ L + RFH V + Sbjct: 122 PVTCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDV 164 Query: 163 GNPHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 GNPH D L D+ + + F +GVN+ + ++ +R ERG Sbjct: 165 GNPHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERG 222 Query: 219 VGLTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+V A + ++V + GG +++ D F+ G + G Sbjct: 223 VGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARG 281 Query: 278 KL 279 L Sbjct: 282 DL 283 >gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A] gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] Length = 289 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60 + FAK G N +++ +T+ + AL D ++ + A Sbjct: 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 Query: 61 ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SVDMG+ L + RFH V +GN Sbjct: 121 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 163 Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH D L D+ + + F +GVN+ + ++ +R ERGVG Sbjct: 164 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 221 Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+V A + ++V + GG +++ D F+ G + G L Sbjct: 222 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTITDATS-FLRGPSVLVARGDL 280 >gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104] gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104] Length = 294 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 123/312 (39%), Gaps = 45/312 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52 + FAK G N +++ +T+ + AL D ++ ++ Sbjct: 1 MKFAKGHGTENDFVLLCDTPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query: 53 HDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D A D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SVDMG+ ++F+ R G V +GN Sbjct: 121 TVHAADATGADVSVDMGKANTLGS---GGKAFEATVGGRRFAG----------LAVDVGN 167 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH D+L D+A+ + F +GVN+ + + + +R ERGVG Sbjct: 168 PHLACLDPELSVDELAALDVAA--PVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVG 225 Query: 221 LTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ VA+ + ++V++ GG +++ D ++ G + G++ Sbjct: 226 ETRSCGTGTVAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI 284 Query: 280 DIKTGKWIKKNE 291 + +W ++ + Sbjct: 285 ---SEEWWQQAQ 293 >gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Mycobacterium Tuberculosis Dapf Length = 290 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60 + FAK G N +++ +T+ + AL D ++ + A Sbjct: 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 61 Query: 61 ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 62 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 121 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SVDMG+ L + RFH V +GN Sbjct: 122 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 164 Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH D L D+ + + F +GVN+ + ++ +R ERGVG Sbjct: 165 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 222 Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+V A + ++V + GG +++ D F+ G + G L Sbjct: 223 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL 281 >gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv] gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97] gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11] gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987] gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92] gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503] gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17] gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85] gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210] gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207] gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506] gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475] gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium tuberculosis H37Rv] gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium bovis AF2122/97] gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11] gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148] gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 4207] Length = 289 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60 + FAK G N +++ +T+ + AL D ++ + A Sbjct: 1 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60 Query: 61 ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SVDMG+ L + RFH V +GN Sbjct: 121 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 163 Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH D L D+ + + F +GVN+ + ++ +R ERGVG Sbjct: 164 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 221 Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+V A + ++V + GG +++ D F+ G + G L Sbjct: 222 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL 280 >gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] Length = 289 Score = 168 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 114/302 (37%), Gaps = 48/302 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 +DF+K G N +V+ ++++ + AL D I+ + Sbjct: 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAGAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG---- 104 + D F+ N DGS + CGNG+R +L R F + G Sbjct: 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRAAGLESRDEFVVGSRAGGKPV 120 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 I+ + + G ++VDMG L S +D F N + +GN Sbjct: 121 IVHSADGAFGEVTVDMGVVR------DLGTSAATIDGKVF-----------NGIGIDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219 PH V+ L L++ L P F GVN+ I ++D+R ERGV Sbjct: 164 PHLAC-VDAHLTAASLSAL--DLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ A+ + V+V++ GG + + + G + G Sbjct: 221 GETRSCGTGTVAAATAALRFDGADSGEVNVRIPGGQVTVAVS-GGRATLRGPSVLVASGT 279 Query: 279 LD 280 LD Sbjct: 280 LD 281 >gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] Length = 312 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 115/307 (37%), Gaps = 48/307 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54 K G GN + + + +D I D + ++ + Sbjct: 17 TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNMLEE 76 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAK 109 DA F+ N DGS + CGNG+R V +L ++ T G+ + Sbjct: 77 HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +G ++DMG + + + H+ + R +SMGNPH + Sbjct: 135 RTEEG-YAIDMGPWSF------IHGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVV 187 Query: 170 FV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERG 218 + E L DL S + +P +G N+ LE+ + +R +ERG Sbjct: 188 MLGQEGKLDGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERG 244 Query: 219 VGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAK 272 VG T +CG+ ACA+ A+ + V + GG L + + D HV + G A+ Sbjct: 245 VGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQ 304 Query: 273 KEWEGKL 279 + +L Sbjct: 305 TVAKIEL 311 >gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] Length = 332 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 26/296 (8%) Query: 6 VDF--AKMEGIGNKILVIDMRGCHDNITS----DAINALSTDDNT-HFDQIMLIHDFQDA 58 + F K G N I ++D R T D + + D + + D + Sbjct: 1 MKFELLKAHGSSNDIFIVDGRPERIFSTPAEVADFVRLVCDRQGPLGGDGLYFVDDSRAV 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRD 113 F N DGS + CGNG+RCV R + R + + T G + Sbjct: 61 PEAFF---FNPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S++V++ +P+ + + + P H LR V++ N H + V+D Sbjct: 118 WSVAVELPPVTFRAADVPVVTTGAEHVD---TVIPTLHPALRF-TGVAVPNSHLVAVVDD 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-SLESLDLRTWERGVGLTAACGSAACAS 232 + +A G + G N+S R + + +RT+ERG GLT +CGS AS Sbjct: 174 YDENELVAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233 Query: 233 VVASGCLH--KTNRAVSVKMLGG--GLLIEWHDNNHVF--MTGEAKKEWEGKLDIK 282 L + + V+ GG + + + + G A + +D++ Sbjct: 234 RAVYSRLGHAPADEPLLVRNPGGCARSFLTPAADGALTPRLEGNATFVYRAVVDLE 289 >gi|154509066|ref|ZP_02044708.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC 17982] gi|153798700|gb|EDN81120.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC 17982] Length = 307 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 104/307 (33%), Gaps = 55/307 (17%) Query: 9 AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K G GN +V D +D + S D I + + F+ Sbjct: 13 VKAHGAGNSFVVATDQYDDYDPSEVEVATLCSPAFGIGADG--FIRAVERDGL-WFMDYR 69 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK-----ENRDGSIS 117 N DGS+ + CGNG+R V L ++ T GI E + S Sbjct: 70 NADGSKAEMCGNGVRVFVDHLRREGLVDLPVGQTLDVATRGGIKRVTPESEDEGQGASYR 129 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174 VDMG P A R+ + + V M NPH + + D+ Sbjct: 130 VDMG---------PAASPA----RETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETL 176 Query: 175 ----LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTA 223 L D++ P G NL + + +R ERGVG T Sbjct: 177 RGVFLPTVDVSQIQQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQ 236 Query: 224 ACGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHD------NNHVFMTG 269 ACG+ CA+ +A+ V + GG + +I+W + VF+TG Sbjct: 237 ACGTGCCAAAIATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPQITDASVFLTG 296 Query: 270 EAKKEWE 276 A + E Sbjct: 297 HATRVAE 303 >gi|157163987|ref|YP_001465937.1| diaminopimelate epimerase [Campylobacter concisus 13826] gi|112801819|gb|EAT99163.1| diaminopimelate epimerase [Campylobacter concisus 13826] Length = 247 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 101/279 (36%), Gaps = 35/279 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + +K GN ++ D + A S + D ++++ ++ Sbjct: 1 MQVSKYNASGNDFVIFHTFLSKDR-SELARQICSRTNGVGADGLIVLLPYEKG---VKWE 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R R+ + F T G ++A +D + V + P Sbjct: 57 FYNSDGSYAAMCGNGSRAAARYAYLNGLVSSSEFALLTGSGEVMASV-KDECVEVVLTSP 115 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K+ + + G F G PH + F ++ L +D+ Sbjct: 116 --------------KILSEPLNEGGKTWYFY------DTGVPHLVNFTQN-LDEFDVKEC 154 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 +L + N+++A+ L +RT+ERGV T ACG+ A + Sbjct: 155 -RVLRQ----KYNANVNLAKF-DGGVLKVRTYERGVEDETLACGTGMAACFYGATLNLNA 208 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V G L +N + +G K ++ ++I Sbjct: 209 AQCLKVYPKSGEELGLRLENGKILFSGAVKHCFDTSIEI 247 >gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1] gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] Length = 260 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 47/277 (16%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ ++ C D I +L + D +L+ A DA + I N D Sbjct: 15 YSGAGNRFIL--SETCPDITI---IPSLCKEYQV--DGFLLVLPSSTA--DAKLIIFNDD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RCVV L+ +K+ + ET G + + + VDM P ++ Sbjct: 66 GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L+ + + R+ F I G PH + FVE D+ + +G+ L H Sbjct: 126 TLSHTLPGVPREVFSI--------------HTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237 F +G N++ + LRT+ERG+ V + Sbjct: 171 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAAL----------VVAQ 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +N + + G L+ + + V++ G KE Sbjct: 221 RYGLSNTQIPIWTWGDILIKISLEGDRVYLEGPVDKE 257 >gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] Length = 162 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 5/151 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF L ++ T G + + + + V+MGEP + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 + P K +D ++ G H + F Sbjct: 121 QKNPF--PCTKGRKDLYYQGNGTHCIMWCSF 149 >gi|256786059|ref|ZP_05524490.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289769955|ref|ZP_06529333.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289700154|gb|EFD67583.1| diaminopimelate epimerase [Streptomyces lividans TK24] Length = 266 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 106/283 (37%), Gaps = 27/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K+ G GN +++ G ++ + +A + D +++ D+ Sbjct: 1 MRFRKIHGAGNDFILLSNLGLDYDNDWSKEAERLCARRTGVGADGLVISRLINDSPAVLE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N D S CGN +RC + + + G++ D S+ V Sbjct: 61 VACFNADSSVATMCGNALRCSAWAAHRDHGFQQMSLR-MAGVVHEAVVSDESVWV----- 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + + V + G H + V DD+ D Sbjct: 115 -----------TAEVGAVLPRRLQAVINGRPTWFDSAHTGTEHVVAIV-DDVDAIDAVMV 162 Query: 184 GNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G L+ H + G N++ + T ++L LRT+ERGV T +CGS A A+VV + Sbjct: 163 GRLVRHHIDLAPLGTNVNFVQSTGQQALKLRTYERGVEAETLSCGSGAVAAVVVATMRGL 222 Query: 242 TNRA-VSVKMLGGG-LLIEWHD---NNHVFMTGEAKKEWEGKL 279 R V+V G L + HD N ++ G +EG L Sbjct: 223 VARRAVTVHNRAGEPLTVRPHDARPNRTHWVGGPVTHTFEGVL 265 >gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] Length = 253 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 47/277 (16%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ ++ C D I +L + D +L+ A DA + I N D Sbjct: 8 YSGAGNRFIL--SETCPDITI---IPSLCKEYQV--DGFLLVLPSSTA--DAKLIIFNDD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RCVV L+ +K+ + ET G + + + VDM P ++ Sbjct: 59 GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L+ + + R+ F I G PH + FVE D+ + +G+ L H Sbjct: 119 TLSHTLPGVPREVFSI--------------HTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 163 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237 F +G N++ + LRT+ERG+ V + Sbjct: 164 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAAL----------VVAQ 213 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +N + + G L+ + + V++ G KE Sbjct: 214 RYGLSNTQIPIWTWGDILIKISLEGDRVYLEGPVDKE 250 >gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 294 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 45/312 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +++ +T + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 A D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +SVDMG+ +F+ R G V +GN Sbjct: 121 TVHAADATGADVSVDMGKANTLGG---GGEAFEATVGGRRFAG----------LAVDVGN 167 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH D+L D+A+ + F +GVN+ + + + +R ERGVG Sbjct: 168 PHLACLDPELSVDELAALDVAA--PVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVG 225 Query: 221 LTAAC-GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +C A V A ++V++ GG +++ D ++ G + G++ Sbjct: 226 ETRSCGTGTVAAVVAALAAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI 284 Query: 280 DIKTGKWIKKNE 291 + +W ++ + Sbjct: 285 ---SEEWWQQAQ 293 >gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 316 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 102/314 (32%), Gaps = 48/314 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLI-----------HD 54 + K N L++ C ++ I A+ D + + Sbjct: 11 ELIKGHATLNDFLMLVDPSCEVAVSGADIAAVCDRHGGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ N DGS + CGN R L S +S T T G Sbjct: 71 ASVPEAEWFMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTVT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D +VDMG L +D GP R V M NPH + Sbjct: 131 RLGD-LWTVDMGPARLTRPEEADDEGWDTTVMVPGLAGP------RAALSVEMPNPHTVV 183 Query: 170 FV--EDDLYHY---DLASFGNLLAKHPMFSEGVNLSIA----RVTSLES------LDLRT 214 + ED+L L + P+ G NL + ++ +R Sbjct: 184 ALGEEDELEAAVFAGLTDSAAPVVYDPLPEVGTNLELVVPLGEEVDPDTQAPVGIARMRV 243 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267 ERGVG T +CG+ CA+ VA + + GG + + +++ V + Sbjct: 244 LERGVGETLSCGTGCCAAAVALHTWTGPGAPEDYRLLVPGGEIGVHVGANPLAEDSTVLL 303 Query: 268 TGEAKKEWEGKLDI 281 TG A G++ I Sbjct: 304 TGPAAV--TGRVTI 315 >gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950] Length = 288 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 114/309 (36%), Gaps = 45/309 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52 + FAK G N +V+ ++T + AL D ++ ++ Sbjct: 1 MKFAKGHGTQNDFVVLPDPAAELSLTGSRVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query: 53 HDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 D D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 DRLPDGVAADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLEDRDDFVVGSLAGPRPV 120 Query: 109 KENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 +R ISVDMG+ D + R G + +GN Sbjct: 121 SVHRVDGTTADISVDMGKAN-------TLGPGDAVLGGRRFSG----------VAIDVGN 163 Query: 165 PHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH D L + F +GVN+ I ++ +R ERGVG T Sbjct: 164 PHLACVDPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGET 223 Query: 223 AACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ VA+ + ++V++ GG +++ D ++ G + G++ Sbjct: 224 RSCGTGTVAAAVAALAGTGADTGTLTVRVPGGEVVVTITDATS-YLRGPSVLVAHGEI-- 280 Query: 282 KTGKWIKKN 290 + +W ++ Sbjct: 281 -SEEWWREQ 288 >gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] Length = 280 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 53/297 (17%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + F Sbjct: 2 VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGAKWF 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114 + N DGS + CGNG R + F S F T G+ + + Sbjct: 61 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MGE + + D + + V MGNPH + +ED Sbjct: 121 VFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 167 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWERGVGLTAAC 225 + +L+ K P+ N+ RV ++ +R ERG G T +C Sbjct: 168 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETLSC 227 Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G+ CA+ + KT + + GG L ++ D++ V +TG A + +D+ Sbjct: 228 GTGLCATGIV--LQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 279 >gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] Length = 289 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 44/299 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53 + FAK G N +++ ++T+ A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 A D F+ N DGS + CGNG+R +L R F ++ G Sbjct: 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++V+MG K + + RF + V +GN Sbjct: 121 VLHEADDTTADVTVEMG------KAVRCGTGTATVGGRRF-----------SGLAVDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 PH V+++L LAS + F GVN+ I ++ +R ERGVG Sbjct: 164 PHLAC-VDEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGE 222 Query: 222 TAACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ VA+ + V++ GG + + + + ++ G + G+L Sbjct: 223 TRSCGTGTVAAAVAALDHQGARTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL 280 >gi|322378405|ref|ZP_08052859.1| diaminopimelate epimerase [Helicobacter suis HS1] gi|322380086|ref|ZP_08054342.1| diaminopimelate epimerase [Helicobacter suis HS5] gi|321147493|gb|EFX42137.1| diaminopimelate epimerase [Helicobacter suis HS5] gi|321149161|gb|EFX43607.1| diaminopimelate epimerase [Helicobacter suis HS1] Length = 254 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 33/275 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K GN L+ D ++ A D ++++ + Sbjct: 1 MHLYKYCASGNDFLITSQFKSGD-YSALAKQLCHRHYGFGADGLVVLLPHH--ELAYTWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS----ISVDM 120 N DGSE + CGN RC + + F + GI+ + G + ++ Sbjct: 58 FYNADGSEAEMCGNASRCAGFYAYKQGLAPCQHAFLSKAGIIRVEVQSLGQTSALVESNL 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P +L + +++ G PH ++FV L Sbjct: 118 GVPKW---------------------LQTLNLEGKTWYLLDTGVPHLVYFVPS-LKQIPS 155 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + F N++IA + ++ L T+ERGV +T ACG+ A +A+ Sbjct: 156 TKIALMQTLRERF--NANVNIACIIDDHTIQLATYERGVEDITLACGTGMAAVFMAAYQE 213 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 H ++ L +N V+ G + Sbjct: 214 HHLMPQATLIPPSQEKLSLCLKDNEVYFKGMVEYV 248 >gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A] Length = 280 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 53/297 (17%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + F Sbjct: 2 VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGTKWF 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114 + N DGS + CGNG R + F S F T G+ + + Sbjct: 61 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 V+MGE + + D + + V MGNPH + +ED Sbjct: 121 VFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 167 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWERGVGLTAAC 225 + +L+ K P+ N+ RV ++ +R ERG G T +C Sbjct: 168 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETLSC 227 Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G+ CA+ + KT + + GG L ++ D++ V +TG A + +D+ Sbjct: 228 GTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 279 >gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] Length = 341 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 98/320 (30%), Gaps = 53/320 (16%) Query: 10 KMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQD----------- 57 K N L++ C +++ D D + + Sbjct: 26 KGHATENDFLLLVDPDCQVALSAGDVAEVCDRHAGVGADGFVRVVRTCALPGVHRFHEAV 85 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENR 112 + F+ N DGS Q CGN +R + L S T T G Sbjct: 86 PEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGGARTLTRAG 145 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +VDMG L L D+ + + R ++M NPH + + Sbjct: 146 Q-LWTVDMGPARLIRPEHALGEVDDEGWDTAVTVPGLEGP--RAALSIAMPNPHTVVALS 202 Query: 173 DDLYHYDLASFG----NLLAKHPMFSEGVNLSIARVTSL--------------------E 208 ++ G + P+ +G NL + Sbjct: 203 EEAELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAESTGQDAEASVRVG 262 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE-----WHD 261 +R ERGVG T +CG+ CA VA + + +LGG + + W Sbjct: 263 RARMRVLERGVGETRSCGTGCCAVAVALHEWEGEDAPTDYLIDVLGGQVGVHVGADPWAP 322 Query: 262 NNHVFMTGEAKKEWEGKLDI 281 + V +TG A G+L + Sbjct: 323 DATVLLTGPATI--TGRLTL 340 >gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] Length = 260 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 47/277 (16%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ C + T I+AL ++ D +L+ A DA + I N D Sbjct: 15 YSGAGNCFIL--SETCPEITT---ISALCKEEQV--DGFLLVLPSSVA--DAKLIIFNDD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS + CGNG+RCV+ L+S +K++ + ET GI K + VDM P ++ Sbjct: 66 GSRPKMCGNGLRCVIAHLSSVLKKEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L + ++ ++ F I + G PH + FV DD+ + +G+ L H Sbjct: 126 NLTYTIAQLPQEIFSI--------------NTGVPHLVVFV-DDVSCIPIDLWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237 F EG N++ S +RT+ERG+ V + Sbjct: 171 ADFSPEGANVNFIEAMSSREFRIRTYERGLERESLACGTGATAAAL----------VVAK 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +N + ++ ++ D + V++ G KE Sbjct: 221 RYGLSNIQIPIRTWSNIVINISLDRDRVYLEGPVNKE 257 >gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN] gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae] gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae] gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] Length = 296 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 42/300 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------------LI 52 + FAK G N +V+ T+ + AL D ++ ++ Sbjct: 1 MIFAKGHGTQNDFVVLPDVEADVTFTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGVL 60 Query: 53 HDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVA 108 D D ++ N DGS Q CGNG+R +L + F ++ G + Sbjct: 61 EHLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRLV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++VDMG+ L P + V +GN Sbjct: 121 NVHHVDELNADVTVDMGKANLLGSGGPA-------------FAVTVGGRRFSGVAVDVGN 167 Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH ++L DL + + F +GVN+ + + +R ERGVG Sbjct: 168 PHLACMDPQLSLEELAALDLGA--PVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVG 225 Query: 221 LTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ VA+ + ++V++ GG ++I D ++ G + G+L Sbjct: 226 ETRSCGTGTVAAAVAALASAGADTGTLTVRVPGGDVVITITDVTS-YLRGPSVLVAHGEL 284 >gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S] gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S] Length = 289 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 48/302 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 ++F+K G N +++ + + + AL D ++ + Sbjct: 1 MEFSKGHGTENDFVILPDPDVDLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R +L R F + G Sbjct: 61 PELPEGVGADDWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G ++VDMG R+ + + +GN Sbjct: 121 HVHSADHVHGDVTVDMGR-----------------VRELGTSTATVGGRVLEGIGIDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219 PH V+ DL LAS L P F EGVN+ I ++ +R ERGV Sbjct: 164 PHLAC-VDPDLTPASLASL--DLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ VA+ H + V V++ GG + + D + G + G+ Sbjct: 221 GETRSCGTGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGR 279 Query: 279 LD 280 +D Sbjct: 280 ID 281 >gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] Length = 289 Score = 161 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 44/299 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53 + FAK G N +++ ++T+ A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 A D F+ N DGS + CGNG+R +L R F ++ G Sbjct: 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + ++V+MG K + + F + V +GN Sbjct: 121 VLHEADDTTADVTVEMG------KAVRCGTGTATVGGRTF-----------SGLAVDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 PH V+++L LAS + F GVN+ I ++ +R ERGVG Sbjct: 164 PHLAC-VDEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGE 222 Query: 222 TAACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ VA+ + V++ GG + + + + ++ G + G+L Sbjct: 223 TRSCGTGTVAAAVAALDHEGAHTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL 280 >gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 161 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 104/297 (35%), Gaps = 53/297 (17%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + + F Sbjct: 1 MYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVSAVLAGGAKWF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114 + N DGS + CGNG R + F S F T G+ + + Sbjct: 60 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRSNTKPYGAN 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++MGE + + D + + V MGNPH + +ED Sbjct: 120 VFQIEMGE-------------WKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 166 Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGVGLTAAC 225 + +L+ K P+ N+ R+ T + +R ERG G T +C Sbjct: 167 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGETLSC 226 Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G+ CA+ + KT + + GG L ++ D++ V +TG A + +D+ Sbjct: 227 GTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 278 >gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] Length = 272 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 47/272 (17%) Query: 13 GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 G GN+ ++ I L + D + + A DA + I N DGS Sbjct: 26 GAGNRFIL-----SEACPDITMIPNLCREHQV--DGFLHVLPSSIA--DAKLIIFNDDGS 76 Query: 73 EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 CGNG+RCV+ +L+S ++++ + ET G+ K + VDM P ++ L Sbjct: 77 RPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKFYSWDRVVVDMTLPNWKYRSHQL 136 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + + ++ F I G PH I FVE DL + +G+ L H Sbjct: 137 THTLSDLPKEVFSI--------------DTGVPHVIVFVE-DLSSVPVNLWGSFLRYHED 181 Query: 193 F-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASGCL 239 F +G N++ + + +RT+ERG+ V + Sbjct: 182 FAPQGTNVNFVQAQDFREIHMRTYERGLERESLACGTGATAAAL----------VLAKRY 231 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 +N + + L+ D++ V++ G Sbjct: 232 GLSNTKIHIWTWNRILIKISLDSDRVYLEGPV 263 >gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478] Length = 290 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 110/310 (35%), Gaps = 45/310 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +++ ++ + I AL D ++ + Sbjct: 1 MMFAKGHGTENDFVLLPDIKAQLSLGTAQIAALCDRRRGLGADGVLRVTTAEAAAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D ++ N DGS Q CGNG+R +L +R F ++ G Sbjct: 61 DRLPDGVGAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRPV 120 Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + ++VDMG+ +++ +G L V +GN Sbjct: 121 TVHSVDASNADVTVDMGKA-------------NRIGTGTAVVGGRRFPGL----AVDVGN 163 Query: 165 PHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH L + F +GVN+ + + +R ERGVG T Sbjct: 164 PHLACLDPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGET 223 Query: 223 AAC-GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +C A+V A ++V++ GG + + D F+ G + G++ Sbjct: 224 RSCGTGTVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATS-FLRGPSVLVATGEV-- 280 Query: 282 KTGKWIKKNE 291 +G+W + + Sbjct: 281 -SGEWWRAQQ 289 >gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] Length = 289 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 48/302 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 ++F+K G N +++ + + + AL D ++ + Sbjct: 1 MEFSKGHGTENDFVILPDPDADLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R +L R F + G Sbjct: 61 PELPEGVGADDWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G ++VDMG R+ + + +GN Sbjct: 121 HVHSADHVHGDVTVDMGR-----------------VRELGTSTATVGGRVLEGIGIDVGN 163 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219 PH V+ DL LAS L P F EGVN+ I ++ +R ERGV Sbjct: 164 PHLAC-VDPDLTPASLASL--DLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGV 220 Query: 220 GLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G T +CG+ A+ VA+ H + V V++ GG + + D + G + G+ Sbjct: 221 GETRSCGTGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGR 279 Query: 279 LD 280 +D Sbjct: 280 ID 281 >gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] Length = 236 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 45/269 (16%) Query: 11 MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 GN L++D + D + +N D ++ + F+ Sbjct: 3 YSANGNTFLIVDNTQKRIPEEKKPDFVR-----ENVGDLDGVIFVELVD---GKYFMDYY 54 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG R ++L R +K K FTF + G + K D SI V M Sbjct: 55 NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEI--KVIVDDSIWVRM----- 107 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 P +M D + + V +G PH + V+ + D+ G Sbjct: 108 -----PGVSEKKEMKVDDYE-----------GYFVVVGVPHFVMEVKG-IDELDVEKLGR 150 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 L + G N+ V + L +RT+ERGV T ACG+ SV A + Sbjct: 151 DLR----YKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVT-SVFAVYRDKTGAK 204 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 V +++ GG L ++ +N +F+ G+ K+ Sbjct: 205 EVKIQVPGGTLFLK-EENGEIFLRGDVKR 232 >gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8] gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8] Length = 236 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 45/269 (16%) Query: 11 MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 GN L++D + D + +N D ++ + F+ Sbjct: 3 YSANGNTFLIVDNTQKRIPEEKKPDFVR-----ENVGDLDGVIFVELVD---GKYFMDYY 54 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG R ++L R +K K FTF + G + K D SI V M Sbjct: 55 NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEI--KVIVDDSIWVRM----- 107 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 P +M D + + V +G PH + V+ + D+ G Sbjct: 108 -----PGVSEKKEMKVDGYE-----------GYFVVVGVPHFVMEVKG-IDELDVEKLGR 150 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 L + G N+ V + L +RT+ERGV T ACG+ + V + Sbjct: 151 DLR----YKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVTSVFVV-YRDKTGAK 204 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 V +++ GG L ++ +N +F+ G+ K+ Sbjct: 205 EVKIQVPGGTLFLK-EENGEIFLRGDVKR 232 >gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 382 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 105/314 (33%), Gaps = 72/314 (22%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIH-------- 53 + F K GN +++D D+++ A A + D +++I Sbjct: 4 IPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQ 63 Query: 54 -----------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102 Q+ + R+ G E CGNG+ C+ +L + S + T Sbjct: 64 SINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTE 123 Query: 103 RGILVAKE-------NRDGSISVDMGEPIL--------------DWKLIPLARSFDKMDR 141 + K NR GS V++G P L D + + K Sbjct: 124 IPLATPKVIKIGTDQNRVGSW-VNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRA 182 Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---------------------- 179 D ++ +V G PH + F + D + Sbjct: 183 DDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSW 242 Query: 180 -LASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 + GN + H F G+N++ AR + ++ R +ERG+ T ACG+ A A Sbjct: 243 LVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYI 302 Query: 236 SGCLHKTN-RAVSV 248 +HK N V V Sbjct: 303 YSQMHKLNISEVDV 316 >gi|109947347|ref|YP_664575.1| diaminopimelate epimerase [Helicobacter acinonychis str. Sheeba] gi|109714568|emb|CAJ99576.1| dapF [Helicobacter acinonychis str. Sheeba] Length = 264 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 17/272 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGN RCV F + K+ F + + I ++G Sbjct: 58 FYNSDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGD 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++I + D + +++ G PH + FV+ L Sbjct: 118 I-LEIISTSGGKKSFSNDSVLA------SIPTFYLIDTGVPHLVGFVKKKESLNSLNILE 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +H + N++IA + + +++ L+T+ERGV T ACG+ A+ A+ + T Sbjct: 171 LRALRH---ASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTP 227 Query: 244 RAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 R ++ L + +N +F G + Sbjct: 228 RNATLIPKSNEHLELSLR-DNEIFYKGAVRYI 258 >gi|154248770|ref|YP_001409595.1| diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1] gi|154152706|gb|ABS59938.1| Diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1] Length = 245 Score = 158 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 40/277 (14%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + K GN ++ID + + + L + +N D + + + Sbjct: 3 KKLKIYKYNANGNTFILIDCLDNTLDDSEKSEIVLKSVENR--DGAIFVERNNNL---FH 57 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG R V +L F T G+L A + D +SV M Sbjct: 58 MDYFNRDGKRAAFCGNGARTFVNYLKEYYGLSGEVLFSTTSGMLKALVDED--VSVQMPN 115 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P ++ + F ++ G PH + VE+ + D+ + Sbjct: 116 PKY----------VKQISYESFQ-----------GALIETGVPHIVIRVEN-VDFIDIEN 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV----VASG 237 + + +F N++ V + L +RT+ERGV T +CGS ++ Sbjct: 154 VAPEIRR--IF--DANVNFYDVVQEKFLRVRTFERGVERETKSCGSGITSTSFYYKYYIL 209 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 K + V LGG L + + +N V++ G + E Sbjct: 210 KDGKQPDEIKVLSLGGVLHVLFKEN-EVYLEGRVEHE 245 >gi|224418877|ref|ZP_03656883.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|253827831|ref|ZP_04870716.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|313142394|ref|ZP_07804587.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|253511237|gb|EES89896.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|313131425|gb|EFR49042.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] Length = 248 Score = 158 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 95/274 (34%), Gaps = 33/274 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+K GN +++ +N S+ + + D ++++ D Sbjct: 1 MFFSKYSASGNDFILMHTFRYKENSYSELAKKICHRQEGIGADGLIILKPHL--EYDFEW 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS + CGNG R + + F + G++ Sbjct: 59 EFYNADGSVAEMCGNGSRAAAMYARDLGLAGERQKFLSKAGVIGVSIEG----------- 107 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +W L+++ D + ++ G L ++ G PH + + +LA Sbjct: 108 --NWAESALSKA-DILQKEISEFGVKWWL-------LNTGVPHLVC------ENANLAFL 151 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + N++IA + + RT+ERGV T ACG+ A L K Sbjct: 152 NKEDLRFLRHKYNANINIASLQD-NRVLARTFERGVEDETLACGTGMAAMFYYLFLLGKV 210 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + G L D +++ GE +K + Sbjct: 211 SNPCLFNPASGEDLYLREDKGTLYLKGEVRKICD 244 >gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] Length = 307 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 104/321 (32%), Gaps = 67/321 (20%) Query: 4 SMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ------ 56 + V F+K G GN ++I D G HD + + A D + + Sbjct: 10 TGVSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGT 69 Query: 57 -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGIL 106 + + F+ N DGS + CGNG+R V+FL + T G+ Sbjct: 70 AVLDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVK 129 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + + G SVDMG+ R D + + R ++ GN H Sbjct: 130 LVRRTAAG-FSVDMGQWKFTMPQTAEDRGVDSL------VTANGLDVARPALSINTGNAH 182 Query: 167 AIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218 + + +L DL ++ P+ G N+ A + +R +ERG Sbjct: 183 TLVALAHRAELDELDLHR-APIV--DPVPEHGSNVEFALPHDPLVVGGIAEISMRVFERG 239 Query: 219 VGLTAA---------------CGSAACASVVASGCLHKTNRAVSVKMLGGGL----LIEW 259 VG T + G A A + + GG + + Sbjct: 240 VGETLSCGTGACAAAAATRFWAGEGAPA-------------EWKINVPGGSVVAKFFVAE 286 Query: 260 HDNNHVFMTGEAKKEWEGKLD 280 HV ++G A G Sbjct: 287 DQTEHVELSGPAVIVARGVFS 307 >gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] Length = 297 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 105/300 (35%), Gaps = 40/300 (13%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----------- 57 K G GN +V R ++ + + A+ D ++ +D Sbjct: 7 KAHGTGNDFVVFTDRDGSLDVPPETVAAVCDRHLGLGGDGLIRAVRSRDLEEGRRLLERH 66 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENR 112 + F+ N DGS Q CGNG+R V L + T G+ Sbjct: 67 PDAEWFMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTS 126 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G +VDMG + R D + R + MGNPH + + Sbjct: 127 GG-YAVDMGPWSFTRGELARERGSD------CVVTAAGLTVPRPGVSIGMGNPHTVVVLS 179 Query: 173 D--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAAC 225 + L DL + + P+ +G N+ L L++R ERGVG T +C Sbjct: 180 EGEKLDTLDLHTAPAV---DPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGETHSC 236 Query: 226 GSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279 G+ ACA+ A+ V++ GG L + + HV + G + +L Sbjct: 237 GTGACAAAAATRFWGGPQSPDRWFVQVPGGVLSVTFVPAPDGTEHVVLAGPVRVVATAEL 296 >gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3] gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3] Length = 260 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 47/277 (16%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ ++ D S D +L+ A DA + I N + Sbjct: 15 YSGAGNRFIL-------SETCPDMTILPSLCKEYQVDGFLLVLPSSVA--DAKLIIFNDN 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RCV+ ++ K+ ET GI + + VDM P + Sbjct: 66 GSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDMTLPDWHYTRH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L+ + + ++ F I + G PH + FVE D+ + +G+ L H Sbjct: 126 LLSHTLPGVPKEVFSI--------------NTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237 F +G N++ + S +RT+ERG+ V + Sbjct: 171 EDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAAL----------VVAR 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 +N + ++ L+ D++ V++ G KE Sbjct: 221 RYGLSNTQIRIRTWSDVLMKISLDSDRVYLEGHVDKE 257 >gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] Length = 265 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 87/271 (32%), Gaps = 33/271 (12%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN L+ D ++ A D ++++ + N Sbjct: 5 KYCASGNDFLITHQFTPQDR-SALAKRICDRHYGFGADGLVVLLPHSKHA--YTWEFYNA 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENR----DGSISVDMGEPI 124 DGS CGN RCV + + TF + G++ + G + ++G P Sbjct: 62 DGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGAP- 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 R + ++ G PH + FV D Sbjct: 121 -----------------KRLESLQLEGQI---WHLLDTGVPHLVHFV-DHPNKIPTHKTP 159 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + F N++ A + ++ L T+ERGV +T ACG+ A + H N Sbjct: 160 QMQTLRARF--DANVNFAYIQDPRTIKLATYERGVEDITLACGTGMAAVFACAYYQHNHN 217 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + G L + ++ ++ G+ Sbjct: 218 PQAVLIPPSGEALNWYLRDDELYFQGQVHFI 248 >gi|34558429|ref|NP_908244.1| diaminopimelate epimerase [Wolinella succinogenes DSM 1740] gi|34484148|emb|CAE11144.1| PUTATIVE DIAMINOPIMELATE EPIMERASE [Wolinella succinogenes] Length = 255 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 43/274 (15%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN ++ D ++ A D ++++ + N Sbjct: 5 KYCASGNDFILFHALKKSDR-SALAQILCDRHRGIGADGLIVLLPH--SLFHFEWEFYNS 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS CGNG R + + K F T G + A D + +++ E + K Sbjct: 62 DGSGADMCGNGARAAALYAYHQGLAPKEQRFLTGAGPISATV-EDKEVEIELTEASILQK 120 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYDLASFGNL 186 I A +++ G PH + F DL +L+ Sbjct: 121 EIERAG--------------------HTWWLIDTGVPHLVSFAAQGIDLDSAELSKL--- 157 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 + N+++A+ + + + LRT+ERGV T ACG+ A+ + + Sbjct: 158 -----RWEFNANVNLAK-LTPDGIALRTFERGVEAETLACGTGMAATFWRAKEEGWVKES 211 Query: 246 VSVKMLGGG---LLIEWHDNNHVFMTGEAKKEWE 276 ++ L I D + +F G+ K + Sbjct: 212 ATLIPASQERLSLRI---DKSKIFFKGKVNKVCD 242 >gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] Length = 237 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 39/266 (14%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN L++D I+ + + D ++ + F+ N D Sbjct: 4 YSANGNTFLMVDNTEK--KISENEKPDFVRNHVGDLDGVIFVE---KVGEKFFMDYYNRD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 GS CGNG R ++L R +K++ FTF + G + D I V M Sbjct: 59 GSMATFCGNGARAFSQYLIDRGWVKQRKFTFLSRAGEIKVFL--DDGIWVRM-------- 108 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 P +++ D + V +G PH I V++ + D+ G LL Sbjct: 109 --PAVSEVKELEVDGY-----------RGHFVVVGVPHFILEVKN-VDEVDVEKLGRLLR 154 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS 247 N+ V + L +RT+ERGV T ACG+ A + + + Sbjct: 155 H----KTNANVDFYEV-AQGFLKVRTYERGVERETKACGTGVTAVFFVHHSRTGS-KEMK 208 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKK 273 V + GG L + +N +++ G+ ++ Sbjct: 209 VLVPGGTLFLR-EENGEIYLKGDVRR 233 >gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 279 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 44/281 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDN-ITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM+G GN L++D I+ AL+T +T D I+ + Q ++I Sbjct: 6 TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + DG+E CGNG+RC R+ ++ F T G+ + D + V++G Sbjct: 61 FDRDGTEETMCGNGLRCATRYFRDTYVRSNVFNIITGDGLKEVFVDND-CVEVNLGA--- 116 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 AR + ++D+ N V G PH + + ++ + G Sbjct: 117 -------ARDYRQIDQ--------------NCHYVYTGVPHVVV-IGSEISLETARAQGQ 154 Query: 186 LLAKHPM------FSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 L EGVN++ T+ + LRT+E GV +T +CG+ + AS + Sbjct: 155 SLRNDKSLCELVGHPEGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAK 214 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + LGG L I +D + ++G + ++GK+ Sbjct: 215 VFGIDLPILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252 >gi|154148142|ref|YP_001406080.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] gi|153804151|gb|ABS51158.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] Length = 247 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 40/260 (15%) Query: 34 AINALSTDDNTHFDQIM---------------LIHDFQDASVDAFIRIINCDGSEVQSCG 78 A + D ++ LI D + +D N DGS+ CG Sbjct: 2 ARKICNHHKGIGADGLIVIIKNKSEISNKISSLILDLNNDKIDFAWDFYNSDGSKADMCG 61 Query: 79 NGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 NG R F ++ K+ F T GI+ A+ ++ I++ +L + + Sbjct: 62 NGSRAAALFAYENKIANKNMKFLTGAGIINAEICE-----INKHLAIVESELTKPVKKAE 116 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 + F G PH + FV+ DL +++ +A++ Sbjct: 117 NFSENGF-----------LWSFYDTGVPHLVTFVK-DLNDFNIE-----VARNLRKKYNA 159 Query: 198 NLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256 N++ A E L +RT+ERGV T ACG+ A + V V G +L Sbjct: 160 NVNFASFKD-EILRVRTYERGVEDETLACGTGMAACFITGVINFNLQNVVKVMPKSGEIL 218 Query: 257 IEWHDNNHVFMTGEAKKEWE 276 +++ VF G ++ Sbjct: 219 YLRKNDDKVFFKGAVSHSFD 238 >gi|242310400|ref|ZP_04809555.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489] gi|239522798|gb|EEQ62664.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489] Length = 253 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 33/279 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M+ + F+K GN +++ R D+ ++ A + D ++++ + Sbjct: 1 MRFFEMFFSKYSASGNDFILMHTFRYNEDSYSNLAKQICHRQEGIGADGLIVLKPHR--E 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISV 118 D N DGS + CGNG R + S F + G++ + D Sbjct: 59 YDFEWEFYNADGSVAEMCGNGSRAAGMYARDLGLAGNSQKFLSKAGMIGVEIEGD----- 113 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 W L+++ + + +D G +N ++++ G PH + +DL Sbjct: 114 --------WAESALSKA-EVLKQDICEFG-------KNWWLINTGVPHLVC---EDLEIM 154 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 L +H N++IA + + RT+ERGV T ACG+ A Sbjct: 155 GLNKEDLRFLRHKY---NANINIASCR-EDRVLARTFERGVEDETLACGTGMAAMFYYLL 210 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +K L +N +++ G+ +K + Sbjct: 211 LANKVKNPCLFNPASKEDLYLREENGKLYLKGKVRKICD 249 >gi|237753277|ref|ZP_04583757.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430] gi|229375544|gb|EEO25635.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 31/274 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+K GN ++ + ++ + + D ++++ + D Sbjct: 1 MFFSKYSASGNDFILTHTFKFKEGSWAELAKRICHRQEGVGADGLIVLKPHL--TYDFEW 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R + + F T G++ A+ + + Sbjct: 59 EFYNADGSVANMCGNGSRAAALYAKDLNLAPNRQEFLTGAGVINAEIFAELESKI----- 113 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+ A + K+ ++ VN +++ G PH + + L DL + Sbjct: 114 -----LVESALTKAKVIQENIQEFGVN------WWLIDTGVPHLVCEGAN-LNKEDLRAL 161 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 N++IA + + RT+ERGV T ACG+ A K Sbjct: 162 --------RHKYNANINIAM-LEKDCVRARTFERGVEDETLACGTGMAAMFYYLKEKDKV 212 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + K L + +F+ G +K + Sbjct: 213 SNPCCFKPASNEELFLREEEGRIFLKGNVRKICD 246 >gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] Length = 272 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 32/283 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQ---IMLIHDFQDASVD 61 + F K GN L+ + +S A + D ++L D +D+ Sbjct: 1 MQFVKYSSSGNDFLIFQSFERDNGGRSSLAKRVCERHNGIGADGMVVLLLGQDSKDSKKY 60 Query: 62 AF-IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGI--LVAKENRDGSIS 117 A+ N DGS+ + CGN R + + + + +F + GI ++ E+ + Sbjct: 61 AYEWEFYNADGSKAKMCGNASRSIGHYAFVEGIAPRKHSFLSQAGIIGIIIDESDANLVQ 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 D+G L HI N ++ ++ G PH + FV D Sbjct: 121 SDLGAYKL----------------VEEHIVESNPYGVKAWALLDSGVPHLVGFVNDK--- 161 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVT---SLESLDLRTWERGV-GLTAACGSAACASV 233 L + + N+++A + + T+ERGV +T ACG+ A A Sbjct: 162 KMLTYSKDEFLQTLREKYNANVNLAYIDESSDKSRILYMTYERGVEDITQACGTGAAAVF 221 Query: 234 VASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275 + L + + L ++ +N H+ G+ ++ Sbjct: 222 AMALRLGLCGKKALLIPPSNEILELQMTENQHILFKGKVQRIA 264 >gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] Length = 307 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 104/306 (33%), Gaps = 55/306 (17%) Query: 10 KMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G GN +V D +D ++ S D I Q F+ N Sbjct: 14 KAHGAGNSFVVATDQFDQYDPSEAEVATLCSPAFGIGADG--FIRAVQRDGS-WFMDYRN 70 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAK-ENRDGSI----SV 118 DGS+ + CGNG+R V L + T GI DG V Sbjct: 71 ADGSKAEMCGNGVRVFVDHLRREGLVDLPLGATLDVVTRGGIKRVTPLEEDGGHGAHYRV 130 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---- 174 DMG A + + I V+ + V M NPH + + D+ Sbjct: 131 DMG-----------AAASPASETIEVRIPGVDGVLGGLW--VDMPNPHTVVELADEETLR 177 Query: 175 ---LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAA 224 L D++ P + G NL + SL + +R ERGVG T A Sbjct: 178 GVTLPTIDVSRLAPGQRPSYAPEPASGTNLELVVDLTTPGSSLGHIAMRVLERGVGETQA 237 Query: 225 CGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHDNNH------VFMTGE 270 CG+ CA+ +A+ V + GG + +I+W V +TG Sbjct: 238 CGTGCCAAALATALRRGATAPTQWVVDVPGGRVSVGLDGVIDWSGGTPRVTNASVLLTGP 297 Query: 271 AKKEWE 276 A + + Sbjct: 298 AMRVAD 303 >gi|293192304|ref|ZP_06609415.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309] gi|292820219|gb|EFF79213.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309] Length = 307 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 103/307 (33%), Gaps = 55/307 (17%) Query: 9 AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K G GN +V D +D + S D I + + F+ Sbjct: 13 VKAHGAGNSFVVATDQYDDYDPSEVEVATLCSPAFGIGADG--FIRAVERDGL-WFMDYR 69 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK-----ENRDGSIS 117 N DGS+ + CGNG+R V L ++ T GI E + S Sbjct: 70 NADGSKAEMCGNGVRVFVDHLRREGLVDLPIGQTLDVATRGGIKRVTPESEDEGQGASYR 129 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174 VDMG S R+ + + V M NPH + + D+ Sbjct: 130 VDMG-------------SAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETL 176 Query: 175 ----LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTA 223 L D++ P G NL + + +R ERGVG T Sbjct: 177 RGVFLPTVDVSQIPQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQ 236 Query: 224 ACGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHD------NNHVFMTG 269 ACG+ CA+ +A+ V + GG + +I+W + VF+TG Sbjct: 237 ACGTGCCAAALATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPRITDASVFLTG 296 Query: 270 EAKKEWE 276 A + E Sbjct: 297 PATRVAE 303 >gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] Length = 290 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 85/245 (34%), Gaps = 44/245 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 +DF K G N +++ G ++T + AL D ++ I Sbjct: 4 IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG---- 104 A D F+ N DGS + CGNG+R LT+ + F + G Sbjct: 64 DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASSLVPGPEFVVGSRAGGRPV 123 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++ + +SV MG + S +D V +GN Sbjct: 124 VVHHADPEAADVSVAMGPATV------FGSSSAGVDGRDLA-----------GIAVDVGN 166 Query: 165 PHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 PH V DL D+AS H +F G N+ + ++ +R ERG G Sbjct: 167 PHLACVVPGLTAADLGGLDVAS--PPSFDHGLFPHGTNVEVITPLVDGAVHMRVHERGSG 224 Query: 221 LTAAC 225 T +C Sbjct: 225 ETRSC 229 >gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175] Length = 248 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%) Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 CGNG+R V R+L + ET++ IL K+ + S+ P ++ P+ + Sbjct: 1 CGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATSLGFDIPTYQVEISPVKFAA 56 Query: 137 DK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AK 189 + + ++ + L F VS+ NPH I FV+ + D + L ++ Sbjct: 57 ETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSE 116 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVS 247 +P F +GVN+S + S +++ +RT+ERGVG T ACG+A A + L ++ Sbjct: 117 NPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLN 176 Query: 248 VKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279 V GG + + + + + G A +G + Sbjct: 177 VYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 212 >gi|239616517|ref|YP_002939839.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1] gi|239505348|gb|ACR78835.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1] Length = 237 Score = 149 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 42/264 (15%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN V+D R + L + D ++ + D F+ N D Sbjct: 6 YSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADK--DGVIFVE-------DHFMDYFNRD 56 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G + CGNG R V F+ TFE+ G + DG +V M Sbjct: 57 GKRAEFCGNGARTYVAFIHEITGETKITFESYAGRIEGFV--DGLYNVKMPPVNYHGSR- 113 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 + FL +G PH + E D + + + Sbjct: 114 --------------EFQGIKGEFLT------VGVPHFVI--EGDTEKLEWETLIPI---- 147 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249 + N+++ + L +RT+ERGV G T ACG+ A A+ + V+++ Sbjct: 148 -RWELNTNINVYKEIEPGKLRIRTFERGVEGETGACGTGATATAW-CYARGRKLLQVTLQ 205 Query: 250 MLGGGLLIEWHDNNHVFMTGEAKK 273 GG L++ + + ++++ G ++ Sbjct: 206 ANGGELVVSFKE-GNIYLGGGVER 228 >gi|32267200|ref|NP_861232.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449] gi|32263253|gb|AAP78298.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449] Length = 264 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 26/277 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K GN L+ D T+ A + + D ++ + + Sbjct: 1 MRFVKYSSNGNDFLIFTTHTYDDGSRTALAKSVCERHNGIGADGMVAVIPAINKDYAYEW 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGI--LVAKENRDGSISVDMG 121 N DGS + CGN R V + + +K F + G+ + +N + D+G Sbjct: 61 EFYNADGSVAKMCGNASRSVGHYAYVEGIAQKRHFFLSKVGLIGITLDDNDISLVQSDLG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E L + I + + +++ ++ G PH + FV + L Sbjct: 121 ECALLQEDIIESNPY----------------GVKSWNLLDSGVPHLVGFVSQENA---LP 161 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + + L + N+S+ + ++ T+ERGV +T ACG+ A A + L Sbjct: 162 TQKDRLLEDLRHKYNANVSLGFI-GEGAISYSTYERGVEDITQACGTGAIAVFALALKLG 220 Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWE 276 ++ + LL + ++++H+ G+ K+ Sbjct: 221 LCEKSAILIPPSKELLHLYMNEDSHILFKGKVKRIAT 257 >gi|291276326|ref|YP_003516098.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198] gi|290963520|emb|CBG39351.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198] Length = 253 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 33/276 (11%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G GN L+ + C D L D +++ Q + N Sbjct: 5 KYSGSGNDFLITHL--CQHPSPKDLAKELCHRHLGIGADGFIILKPHQ--TYAYAWEFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS CGN RCV + + + F + ++ +++ +G+P Sbjct: 61 SDGSSALMCGNASRCVAHYANKHHLAKAQHIFWAGARAIEVHVKKN-TVATHLGKPS--- 116 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGN 185 + + + + G PH + F + L Y + Sbjct: 117 ---------------TVETLSLISSYASYAYKIDTGVPHLVIFAKSQKSLPAYATQELKD 161 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 L ++ N+++ + ++L + T+ERGV +T ACG+ A+ LH + Sbjct: 162 LREEY-----NANVNVVYAKNPKTLYVHTYERGVEDITLACGTGMAAASGVYHFLHPDHC 216 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + LI + ++ G+ + +D Sbjct: 217 LFTCLPPSREELILKVEEQNIIFEGKVRHIATCYID 252 >gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5] Length = 124 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 70/123 (56%), Positives = 91/123 (73%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121 Query: 123 PIL 125 P+ Sbjct: 122 PVF 124 >gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 123 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG 220 MG H++ FV +D YD+ G + + +F + VN++ +V + +++ TWERG G Sbjct: 1 MGTDHSVIFV-NDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAG 59 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 T ACG+ A AS V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 60 RTLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117 >gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 253 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 35/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K E GN +V++ H S D +++ D++V +R Sbjct: 1 MQFWKFEAEGNSYIVVESSNLHAVDIP---AICSKRTGLSGDGLLVAEWLTDSTV--HMR 55 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RCV F +++ + + + + + + + Sbjct: 56 VFNADGTEAPMCGNGARCVAAFAYVNRPQLRDQDIVIKAQGATVTHRLAGEEGMKFN--- 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + ++ PL +N + + +G+PH + DL +L Sbjct: 113 ATIRFERDPL----------------INKYGEESRYQYVVGSPHLVILT--DLEAVNLTH 154 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + F G N+ A V + + WERGVG+ C + + A+ + L Sbjct: 155 EGPIYE--ATFDGGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGS-AAAAMAVALEMP 211 Query: 243 NRAV--SVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEG 277 + + V G + +EW+ + V M G EG Sbjct: 212 DWPLESEVLTPQGCVRVEWNAMDKVLCMEGNVSLVAEG 249 >gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] Length = 238 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 43/273 (15%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN LV+D R + + L D D + + F+ NCD Sbjct: 7 YTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGR--DGAIFVERD-------FMDYYNCD 57 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ CGNG R V F+ + KR F + G ++ K D +SV M P Sbjct: 58 GNRAAFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKV--DDLVSVRMPSPRF----- 110 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 +F++ D + +V +G PH + E D D + L Sbjct: 111 --LGTFEEEDY--------------SGEIVVVGVPHLVI--EGDTDKVDWNALLPL---- 148 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249 N+++ V SL +RT+ERGV G T ACGS A + V V ++ Sbjct: 149 -RHLYDANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGC-EKVILQ 206 Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 GG L + + + ++ G +K E +L+++ Sbjct: 207 ANGGDLTVSFR-DGSAYLGGGVEKCSE-ELELQ 237 >gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 101 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V DD+ + G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ Sbjct: 1 MIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTG 60 Query: 229 ACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFM 267 ACA+VVA L + V V + GG L IEW V M Sbjct: 61 ACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMM 101 >gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 193 Score = 141 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 23/196 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + A + D ++++ Sbjct: 1 MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113 F+ N DGS+ CGNG+RC +L + + F +T+ G L + N D Sbjct: 60 --FMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S V+MG+PI + K + + ++ R++ +I + MG H++ FV D Sbjct: 118 FSARVNMGKPIFNIKEL-INTEKEQFLREKINIDGKEIEI----SYIFMGTDHSVIFVND 172 Query: 174 ----DLYHYDLASFGN 185 D+ + + Sbjct: 173 FSDYDIDEFPFSLILP 188 >gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 255 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 30/240 (12%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115 A D ++ N DGS Q CGNG+R +L + R F + G +R + Sbjct: 29 APGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGMEGRDEFVVASAAGPRPVTVHRADA 88 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF- 170 I+VDMG+ P +F+ R G V +GNPH Sbjct: 89 TRADITVDMGKANTLGSGGP---AFEATVGGRRFAG----------LGVDVGNPHLACVD 135 Query: 171 ---VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 DDL D+A+ + H F EGVN+ + + ++ +R ERGVG T +CG+ Sbjct: 136 PALTADDLAGLDVAA--PVSFDHAQFPEGVNIEVLTAPADGAVRMRVHERGVGETRSCGT 193 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ T+ ++V++ GG +++ D ++ G + G++ +G+W Sbjct: 194 GTVAAAVAALAAAGTDTGTLAVRVPGGEVVVTVTDATS-YLRGPSVLVAHGEV---SGEW 249 >gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818] Length = 462 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%) Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLR 213 R ++V MGNPHA+ ++ + D+ G+ L F + VN+ +V + + LR Sbjct: 331 RPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHVRLR 390 Query: 214 TWERGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNH--VFMTG 269 +ERG G T ACG+ ACA+V A+ + ++V M GG L + W + H + MTG Sbjct: 391 IFERGAGETLACGTGACAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLTMTG 450 Query: 270 EAKKEWEGKLDI 281 A + G + + Sbjct: 451 PATCCFAGAITL 462 Score = 65.5 bits (159), Expect = 9e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSD---AINALSTDDNTHFDQIMLIHDFQD 57 + F KM+G+GN +V+D + D FDQ++L+ Sbjct: 14 LRFWKMQGLGNDFVVVDGVRQPHEVVHRLLDPDHGTLKRLADRRFGVGFDQLLLVQASAT 73 Query: 58 AS 59 A Sbjct: 74 AP 75 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106 RI N DG EV CGNG RCV F+ T++G L Sbjct: 145 YRIFNADGGEVFQCGNGARCVAAFVKHLGLWSEPRIRVRTLQGTL 189 >gi|326773669|ref|ZP_08232952.1| diaminopimelate epimerase [Actinomyces viscosus C505] gi|326636899|gb|EGE37802.1| diaminopimelate epimerase [Actinomyces viscosus C505] Length = 316 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 95/314 (30%), Gaps = 48/314 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54 + K N L++ GC I+ I A+ D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ DGS + CGN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGSVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + +VDMG L +D G R V + PH + Sbjct: 131 RLGE-LWTVDMGPARLASPEEADDEGWDTAVDVPGLAGQ------RAALSVEISGPHTVV 183 Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214 + ++ A G +A P G NL + E+ +R Sbjct: 184 ALGEESELKAAAFAGLTDSAAPVAYDPAPEAGTNLELVAPLGEETDPDTQSSVGIARVRV 243 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267 ERGVG + + G+ CA VA + + GG + + ++ V + Sbjct: 244 LERGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGADPLGEDGSVLL 303 Query: 268 TGEAKKEWEGKLDI 281 TG A G++ + Sbjct: 304 TGPATI--TGRVTV 315 >gi|157364800|ref|YP_001471567.1| diaminopimelate epimerase [Thermotoga lettingae TMO] gi|157315404|gb|ABV34503.1| Diaminopimelate epimerase [Thermotoga lettingae TMO] Length = 240 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 94/266 (35%), Gaps = 41/266 (15%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN L+ D + D L + T D + + D F+ N D Sbjct: 6 YSANGNTFLIFDSMTNL--LGDDTKRDLILNYITDQDGAIFVEKS---GQDFFMDYFNRD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 G CGNG R V FL K F T G L ++ ISV M PI K Sbjct: 61 GKRAIFCGNGARAFVAFLRDEGFLKDDHLIFHTKSGTLKGFIQKE-KISVQMPGPIYLGK 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + F+ ++ +G H + V+ + D+ G L Sbjct: 120 R--VVEEFE-------------------GHLIRVGVLHFVLKVKS-VDRMDVIHEGKRLR 157 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS 247 N+ ++ + +RT+E+GV T ACGS A A Sbjct: 158 A----LTDANIDFYQILEKNCVKMRTFEKGVERETKACGSGAAAVFSICQTDRLL----- 208 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKK 273 V++ GG L + + + + +F+ GE ++ Sbjct: 209 VEVPGGILCV-YINGDSIFLQGEVRR 233 >gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC 25291] Length = 231 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 30/245 (12%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115 A+ D ++ N DGS Q CGNG+R +L R F ++ G + + Sbjct: 5 AAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADA 64 Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +SVDMG+ ++F+ R G V +GNPH Sbjct: 65 TGADVSVDMGKANTLGS---GGKAFEATVGGRRFAG----------LAVDVGNPHLACLD 111 Query: 172 E----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 D+L D+A+ + F +GVN+ + + + +R ERGVG T +CG+ Sbjct: 112 PELSVDELAALDVAA--PVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGT 169 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ + ++V++ GG +++ D ++ G + G++ + +W Sbjct: 170 GTVAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEW 225 Query: 287 IKKNE 291 ++ + Sbjct: 226 WQQAQ 230 >gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 86 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVR 86 RI N DGSEV CGNG RC R Sbjct: 61 YRIFNADGSEVSQCGNGARCFAR 83 >gi|304309744|ref|YP_003809342.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] gi|301795477|emb|CBL43675.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] Length = 334 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 98/318 (30%), Gaps = 47/318 (14%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + + F KM G LVID+ + I + I L+ F ++++ D Sbjct: 25 TGRLQFTKMYASGEDFLVIDLVSQYYRIEAQQIQRLAHPQLGIVFGALLMVLPPATPDAD 84 Query: 62 AFIRIINCDGSE-------------VQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106 R+ +G E ++ G RCV +F+ R + ET G L Sbjct: 85 FRFRLFTANGEEIGRAQEATHPAHLLEMLG-AARCVAQFVRQRQLTNKHQLLIETPLGEL 143 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + +D P + ++ H Sbjct: 144 TVQIGEFEEACIDFLPPAWANTFTKSQSFNLVTPSHSTPVTLIHTPAGETGTHS-----H 198 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--------- 217 A + D++ L + + L H +F + + +V + + + LR + R Sbjct: 199 A-LLMADNMDRKALQAIASALENHTLFPKQATIMFMQVENRKRVHLRFF-RARTESTFLT 256 Query: 218 ---GVGLTAACG---SAACASVVASGCLHKTNRAVSVKM----LG---GGLLIEWHDNNH 264 G G + A + + V V + G L I W +N Sbjct: 257 EDAGAAGALEVGGRDTDAFIAAAVGLRQQLIDHPVQVLLHAPTPGFSAHTLGIHWQGDNQ 316 Query: 265 VF-MTGEAKKEWEGKLDI 281 V + G A +EG + + Sbjct: 317 VMRLGGTATTVFEGSIAL 334 >gi|325068456|ref|ZP_08127129.1| diaminopimelate epimerase [Actinomyces oris K20] Length = 316 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 94/306 (30%), Gaps = 46/306 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54 + K N L++ GC I+ I A+ D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGGGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ DG+ + CGN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGTVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + +VDMG L +D GP R V + PH + Sbjct: 131 RLGE-LWTVDMGPARLASPEEAEDEGWDTAVVVPGLDGP------RAALSVEISGPHTVV 183 Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214 + ++ A G + +A P G NL +A E+ +R Sbjct: 184 ALGEEGELEAAAFAGLTDSADPVAYDPAPEVGTNLELAVPLGEETDPDTQSSVGIARMRV 243 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267 ERG+G T + G+ CA VA + + GG + + ++ V + Sbjct: 244 LERGMGETLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGSDPLGADSSVLL 303 Query: 268 TGEAKK 273 TG A Sbjct: 304 TGPAAI 309 >gi|320534674|ref|ZP_08035115.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133108|gb|EFW25615.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 316 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 97/314 (30%), Gaps = 48/314 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54 + K N L++ GC I+ I A+ D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ DGS + GN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGSVAEMSGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + +VDMG L +D +G R V + PH + Sbjct: 131 RLGE-LWTVDMGPVRLTSPEEADDEGWDTAVVVPGLVGQ------RAALSVEISGPHTVV 183 Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214 + ++ A G + +A P G NL + ES +R Sbjct: 184 ALGEEGELEAAAFAGLTDSTDPVAYDPAPEAGTNLELVVPLGEESDPDTHSPVGIARMRV 243 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267 ERGVG + + G+ CA VA + + GG + + +++ V + Sbjct: 244 LERGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVRVVADPLGEDSSVLL 303 Query: 268 TGEAKKEWEGKLDI 281 TG A G++ + Sbjct: 304 TGPAAI--TGRVTV 315 >gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 413 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 105/311 (33%), Gaps = 73/311 (23%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIH--- 53 + + V F K GN +++D ++ A A ST D ++++ Sbjct: 10 VAAKTVPFVKYTSCGNNFVIVDATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQRSN 69 Query: 54 ----------------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF 97 ++ D R+ +G E CGNG+ C+ FL + Sbjct: 70 ARTLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVTVS 129 Query: 98 TFETIRG------ILVAKENRDGSISVDMGEPILDW-------KLIPLARSFDKMDRDRF 144 T I + DGS V++G P L PL + D ++ Sbjct: 130 NIATEIPLSSPNIISIGSLGYDGSW-VNLGMPRHTPTQLVNRDSLHPLDDTIDVIEELTI 188 Query: 145 HIGPVN-------HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS--FGNLLAKH----- 190 + ++V G PH + F + D +LAS FG H Sbjct: 189 QFRRDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPEDR 248 Query: 191 ---------------------PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSA 228 +F +GV+++ AR+ +L+S+ R +ERG+ T AC + Sbjct: 249 RRGLGAWLVHRIGSFINSRCRHIFPDGVSVNFARIHNLDSVSNRCFERGINRETLACSTG 308 Query: 229 ACASVVASGCL 239 A A L Sbjct: 309 ALAVAYVVQQL 319 >gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] Length = 182 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%) Query: 76 SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 CGNG R F K + +F T GI+ AK N+D + V +G K+ + Sbjct: 1 MCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQN 53 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 +F+++ + + G PH + F ++ L F +L + Sbjct: 54 TFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFDTILCQKMRQK 93 Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 94 YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153 Query: 254 GLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + N +F G+ K +E + Sbjct: 154 EKVGFTYKNEELFFEGKVKYCFEANYN 180 >gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni] Length = 182 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 29/207 (14%) Query: 76 SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 CGNG R F K + +F T G++ AK N+D + V +G K+ + Sbjct: 1 MCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQN 53 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 +F+++ + + + G PH + F ++ L F +L + Sbjct: 54 TFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFDTMLCQKMRQK 93 Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 94 YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153 Query: 254 GLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + N +F G+ K +E + Sbjct: 154 EEVGFAYKNEELFFEGKVKYCFEANYN 180 >gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa] Length = 108 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 1/108 (0%) Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ V Sbjct: 1 VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 60 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A V + + GG L IEW V MTG A + +EG++ + Sbjct: 61 AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108 >gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum] Length = 92 Score = 132 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 48/81 (59%) Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 A+V S ++ +R WERG G+T ACG+ ACA++VA+ T R + + GG L IEW Sbjct: 1 EFAQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEW 60 Query: 260 HDNNHVFMTGEAKKEWEGKLD 280 +++ V MTG + G+L Sbjct: 61 TEDDRVLMTGPVALAFSGRLS 81 >gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] Length = 267 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 111/278 (39%), Gaps = 34/278 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD--FQDASVDAFIRI 66 +K GN L+ N A+ + D ++++ +D+++ Sbjct: 11 SKYCASGNDFLIFHSF-LEQNRAKMAVELCNRFYGIGADGMVVVLPYESKDSNIAYKWEF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL-----VAKENRDGSISVDM 120 N DGS CGN R V + +++ ++ +F + GI+ +++ + ++ Sbjct: 70 YNADGSFAGMCGNASRAVSLYAFHNKLATQNHSFLSGAGIIDTSIKEIIDSKHAYVQSNL 129 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GE +L ++ + + + H+ +R PH ++F + ++L Sbjct: 130 GEYVLQGNIV---------ENKKGSVYEFEHIIMRI--------PHLVYF-ATSMKEFNL 171 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 S H N++IA + + + T+ERGV +T ACG+ ACA V+ Sbjct: 172 LSNDLEFLSHLRHKYDANVNIA-IRENDKIYYVTFERGVENITQACGTGACAVYVSLRDF 230 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWE 276 KT ++ L + ++ N ++ +G K + Sbjct: 231 SKT---YTLIPPSKEKLQVSYN-NGLIYFSGLVTKVCD 264 >gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 119 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 13/120 (10%) Query: 8 FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M +++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ ++V+ G+ Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAE------VTVEEGK 117 >gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208] Length = 168 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 12/151 (7%) Query: 158 FVVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTW 215 VS+ NPH I FV+ + D + L +++P F +GVN+S + + +++ +RT+ Sbjct: 3 SAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLNDDAIYVRTF 62 Query: 216 ERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTG 269 ERGVG T ACG+A A + L ++V GG + + ++ + + G Sbjct: 63 ERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIG 122 Query: 270 EAKKEWEGKL----DIKTGKWIKKNEDDEAY 296 A +G + DI T + + Y Sbjct: 123 NATFVSKGSVRYENDIVTELTNEATAEQAQY 153 >gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] Length = 184 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 9/147 (6%) Query: 142 DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVN 198 ++ V L F VS+ NPH I FV+ + D + L +++P F +GVN Sbjct: 2 EKLFNQVVPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVN 61 Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLL 256 +S + +++ +RT+ERGVG T ACG+A A + L ++V GG + Sbjct: 62 VSFVKRLRDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQ 121 Query: 257 IEWHDNN----HVFMTGEAKKEWEGKL 279 + + + + G A G + Sbjct: 122 VTAKKDETGEISLQLIGNATFVSNGSV 148 >gi|229589602|ref|YP_002871721.1| putative epimerase [Pseudomonas fluorescens SBW25] gi|229361468|emb|CAY48344.1| putative epimerase [Pseudomonas fluorescens SBW25] Length = 346 Score = 105 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 88/240 (36%), Gaps = 35/240 (14%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----------KR 94 D +++ A + I+N DGS + GNG+ + LT + Sbjct: 84 CDGLLV--GPFQAEPPFDLLIVNTDGSLAERSGNGLTIFAQALTEQALMTDACELRVHHD 141 Query: 95 KSFTFETIRGILVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 K+ + + D + +++G P + A+ D+ + + ++ L Sbjct: 142 KTDAVSPVATRVEPSVREDVAGFWLELGLPTFGPSAV-GAQGVDQAFLEGAELSHISELT 200 Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLYHYDLASF--GNLLA--KHPMFSE--------- 195 NP V +GNPH + VE D A L K F+ Sbjct: 201 AINPQWATSQFVRVGNPHCVTLVERVSALPDNAQMQQPALFEALKAIAFAPPAGGGQPCA 260 Query: 196 -GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGG 253 GVNL A S L R +ERG G TA+ G++A A A+ ++V M GG Sbjct: 261 AGVNLQWAARESRNRLIARVFERGEGPTASSGTSASAVACAAWRAGWVESGDIAVVMPGG 320 >gi|294623973|ref|ZP_06702765.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601728|gb|EFF45673.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 132 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%) Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ V + + G LL + F + VN+ A V + L + R G T Sbjct: 19 NPHAVVEV-GRVDALPVERLGALLLHNSAFPDSVNVGFAHVVKPGHVRLLVYHRCFGETL 77 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 ACGS ACA+ L R V V + GG L I W + V M+G A ++G Sbjct: 78 ACGSGACAAAEVLMHLGHLERDVQVSLPGGELRIRWPGDQQQVVMSGPAVFVFDG 132 >gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56] Length = 138 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIR-GILVAKENRD-GSISVD 119 FI I+N DGS+ Q+CG + R R + K GIL A E+ + D Sbjct: 62 FIDILNSDGSKAQACGK-RHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRDDLPSD 120 Query: 120 MGEPILDWKLIPLARSFD 137 MG+P+ DW P F Sbjct: 121 MGKPVFDWGQDPALGRFP 138 >gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] Length = 251 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 26/265 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M F K+ GN L+ + +D + S ++ DQI++I I Sbjct: 1 MYKFLKLHSCGNDFLIF-FKKVNDFLIS---KFINKKSGITCDQILIIKKIILDKNIIKI 56 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEP 123 IIN + S +CGNG+R + F + K S F +++ +N+ +I P Sbjct: 57 EIINNNLSRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K+I + FL++ F V + N H I +++ + Y L F Sbjct: 117 NFFKKII----------------LRIEFYFLKSGF-VELNNLHFITIIKN-IKTYYLFFF 158 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 N + + F+ VN+ ++ +R +E+GVG T +CG+ +S ++K Sbjct: 159 YNKI--NFFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKI 216 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMT 268 +V LGG I + D + +T Sbjct: 217 NLFNVYSLGGFSKISFFDK-FIILT 240 >gi|217032381|ref|ZP_03437876.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128] gi|216945948|gb|EEC24564.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128] Length = 159 Score = 100 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 4/118 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ + ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLIT-QSFKKRDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS+ CGN RCV F + K F + + I ++G Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGN 115 >gi|312960043|ref|ZP_07774556.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] gi|311285700|gb|EFQ64268.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] Length = 339 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 47/267 (17%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETI 102 D +++ A + I+N DGS + GNG+ + LT + Sbjct: 77 CDGLLV--GPFQAQPPFDLLIVNTDGSLAERSGNGLTIFAQALTDQGLMTDGCELRVHHD 134 Query: 103 --RGILVAKENRDGSI-------SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 G+ + ++ + +G P + A+ D++ D + V+ L Sbjct: 135 QPDGVSPVATWVEPAVFEQVAGFWLALGPPAFGPSAV-GAKDVDQVLLDTTELSHVSALA 193 Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE------------- 195 +P V +GNPH + VE D + + + +F Sbjct: 194 AIDPHWAHSQFVRVGNPHCVTLVEQASALPD----NSQMQRSALFEALQAIAFAPPAGSG 249 Query: 196 -----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVK 249 G+NL A + R +ERG G TA+ G++A A A+ V+V Sbjct: 250 QPCVAGINLQWAAQQPGNRVVARVFERGEGPTASSGTSASAVACAAWRAGWVEAGEVAVV 309 Query: 250 MLGG--GLLIEWHDNN--HVFMTGEAK 272 M GG + + D+ V + G A+ Sbjct: 310 MPGGIAPVRLHVQDDTLLSVSLFGTAR 336 >gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 99.4 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIR 103 M++HD DAF+RI N DGSE +CGNG RCV L + + T ET Sbjct: 1 MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARS 135 G++ K D S +VDMG+P L W IPLA Sbjct: 61 GLVAVKRITDRSFTVDMGQPRLRWDEIPLAEP 92 >gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 179 Score = 99.1 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 31/203 (15%) Query: 81 MRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139 R + + K +F+T GI+ A + D + +A K Sbjct: 5 SRAAALYAYQTPLCSKXCSFKTGAGIIKASIDNDF---------------VEVALXAPKX 49 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199 + F + + F + + G PH + FV D+L +DL+ L K+ N+ Sbjct: 50 LSEPF----IEYGFEWSFY--DTGVPHLVTFV-DNLSKFDLSVCSELRKKY-----NANV 97 Query: 200 SIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLI 257 + A + L++RT+ERGV T ACG+ AS K N + V L + Sbjct: 98 NFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNPCLKVNPKSKEDLWL 157 Query: 258 EWHDNNHVFMTGEAKKEWEGKLD 280 ++ D ++ G+ K ++ + Sbjct: 158 KF-DGETIYFKGKVKHCFDTSIS 179 >gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 65 Score = 98.7 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINC 69 RI NC Sbjct: 61 RIFNC 65 >gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria immitis] Length = 106 Score = 96.4 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103 DQ+++I D A D F+ I N DGS+V+ CGN RCV + T E Sbjct: 15 GCDQVIVITDSSTA--DCFMHIYNADGSKVEMCGNAARCVGYLTMLEKDTEYATIELVNN 72 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARS 135 IL + D I V+MG+P+L W IPL+ Sbjct: 73 RILECFKVSDKFIKVNMGKPLLKWHEIPLSIE 104 >gi|326445010|ref|ZP_08219744.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 123 Score = 96.0 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245 + + G + L LR ERG G T +CG+ ACA+V A+ Sbjct: 1 VEPAGAYPHGTFVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAAATHHTVPEPGT 60 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 V GG L + H + + +TG A+ G + + G+ Sbjct: 61 WIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLPRGE 100 >gi|207109146|ref|ZP_03243308.1| diaminopimelate epimerase [Helicobacter pylori HPKX_438_CA4C1] Length = 92 Score = 96.0 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K G GN L+ D ++ A + D ++++ +D D Sbjct: 1 MVFYKYSGSGNDFLITQSFKKKD-FSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM 92 N DGS+ CGN RCV F Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA 84 >gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens] Length = 61 Score = 90.2 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 K+ +F +G N++ +V +++R WERG G T ACG+ CASV+A+ L ++ V Sbjct: 3 RKYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61 >gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510] gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510] Length = 111 Score = 88.7 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 + A D + I N DGSEV CGN RC+ +++ ++K+ T ET+ GI V K + + Sbjct: 4 KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63 Query: 114 G----SISVDMGEPIL 125 ++VDM P+L Sbjct: 64 NELVEEVTVDMDLPLL 79 >gi|213612318|ref|ZP_03370144.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 55 Score = 81.7 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + F+KM G+GN +V+D + + + I LS FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPE 55 >gi|255523491|ref|ZP_05390459.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512748|gb|EET89020.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 74 Score = 78.6 bits (193), Expect = 9e-13, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN+ +V++ + ++T AI + + D I+L Q D ++I Sbjct: 6 FVKTHGLGNEYIVLNEEKINFSLTQKAIKRICNVNFGIGSDGILL--KVQSNKADFGLKI 63 Query: 67 INCDGSEVQSC 77 N DGSE + Sbjct: 64 FNPDGSEAEKS 74 >gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group] gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group] Length = 68 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 VG T ACG+ ACA VVA+ + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 5 VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64 Query: 278 K 278 Sbjct: 65 S 65 >gi|77460003|ref|YP_349510.1| diaminopimelate epimerase-like [Pseudomonas fluorescens Pf0-1] gi|77384006|gb|ABA75519.1| putative epimerase [Pseudomonas fluorescens Pf0-1] Length = 330 Score = 77.1 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 36/250 (14%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFE-- 100 D ++ I FQ A + I+N DG+ + GNG+ R L + + + Sbjct: 67 DGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLRVHHD 124 Query: 101 -------TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 + A+ +D+G+P + A + + + + V L Sbjct: 125 KQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAV-GALGVEPVPFNGVEVNRVRPLA 183 Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLY--------HYDLASFGNLLAKHPM------FS 194 +P V +GNPH + V+D++ LA +A Sbjct: 184 QLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQPCP 243 Query: 195 EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGG 253 GVNL A + + R +ERG G TA+ G++A A A+ + + V V M GG Sbjct: 244 AGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLMPGG 303 Query: 254 GLLIEWHDNN 263 I + + Sbjct: 304 TAPILLEERD 313 >gi|297521540|ref|ZP_06939926.1| diaminopimelate epimerase [Escherichia coli OP50] Length = 56 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 S ACA+V V V++ GG L I W H ++MTG A ++G + + Sbjct: 1 SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 56 >gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] Length = 124 Score = 76.7 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223 PH + FV++ + L + +H N++IA + + E++ L+T+ERGV T Sbjct: 2 PHLVGFVKNKEWLNSLNTLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTL 58 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ACG+ A +A+ + T + ++ L N+ +F G + Sbjct: 59 ACGTGMAAVFIAARIFYNTPKKAALIPKSNESLELSLKNDGIFYKGAVRYI 109 >gi|70731390|ref|YP_261131.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68345689|gb|AAY93295.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 329 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 93/265 (35%), Gaps = 41/265 (15%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFE- 100 D +++ + I+N DG+ + GNG+ + L + Sbjct: 67 DGLLV--GPFQDVAPFDLLIVNTDGTLAERSGNGLTIFSQALAEQGLLAEQGPTLLQVHH 124 Query: 101 ---TIRGILV-----AKENRDGSISVDMGEPILDWKLIPLARSFDKM---DRDRFHIGPV 149 T + A+ +D+G+P + + A + + R+ + P+ Sbjct: 125 DQPTGTSPVATVVEPARVAGVPGFWLDLGQPSFGPEAV-AAIGVETVTLNGRELSRVAPL 183 Query: 150 NHLFLRNPF--VVSMGNPHAIFFVEDD--LYHYDLASFGNLLA--KHPMF---------- 193 L V +GNPH + +ED L L F Sbjct: 184 QALDPLWEHSQFVRIGNPHCVTLLEDAEALPGNPQMLEAPLAEGLTATAFALPLGSGEPC 243 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLG 252 GVNL A S + + R +ERG G TA+ G++A A A+ + V V M G Sbjct: 244 PAGVNLQWAARESAQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVKAGEVQVVMPG 303 Query: 253 GG--LLIEWHDNN--HVFMTGEAKK 273 G L +E D V + G+A + Sbjct: 304 GTAPLRLEEQDGELRRVCLFGQAVR 328 >gi|330810830|ref|YP_004355292.1| epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378938|gb|AEA70288.1| Putative epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 330 Score = 72.5 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 41/266 (15%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFET 101 D ++ I FQ + I+N DG+ + GNG+ + L ++ Sbjct: 67 DGLL-IGPFQSEPP-FDLLIVNTDGTLAERSGNGLTIFSQALQAQGLMPGAGECVLQVHH 124 Query: 102 IR---------GILVAKENRDGSISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGP 148 + + A+ + +D+G+P+ + + F++ D R Sbjct: 125 DKPDGLSPLQTSVRAAEFDGVQGFWLDLGKPLFGAQAVGAQEVESVMFNQCDVSRVAALH 184 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---------LASFGNLLAKHP------MF 193 + + VS+GNPH + V + L+ +A Sbjct: 185 QLNPAWGHSQFVSIGNPHCVTLVAG-VEALPGNSQMRAAALSQSLTRIAYAAPGGAGVPC 243 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLG 252 GVNL A + + R +ERG G TA+ G++A A A+ + AVSV M G Sbjct: 244 PRGVNLQWAWHEAEGRIAARVFERGEGPTASSGTSASAVASAAWRVGWVQAGAVSVVMPG 303 Query: 253 GGLLIEWHDNN----HVFMTGEAKKE 274 G I + V + G A+ Sbjct: 304 GTAPILLEEEAGELVRVRLFGTARLV 329 >gi|330976603|gb|EGH76647.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 52 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 A+ VA+ + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 1 AAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 52 >gi|255523492|ref|ZP_05390460.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512749|gb|EET89021.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 60 Score = 68.6 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208 VSMGNPH + + +L ++ +G + H MF N+ A+V S Sbjct: 12 CVSMGNPHCVIL-KQELSIDEIKEYGRFIENHSMFPNRTNVQFAKVLSRS 60 >gi|315647127|ref|ZP_07900240.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453] gi|315277329|gb|EFU40658.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453] Length = 293 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 100/303 (33%), Gaps = 61/303 (20%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDA 58 +DF K N ++I + D ++ DN + +Q+ I F+ Sbjct: 2 KHKIDFVKCNPTQNMTVLI-----KSKLPPDDYKVIAAKIMSYDNVYAEQVGFIEPFRKE 56 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN 111 + DA + + + + CGN + +L + + ++ + Sbjct: 57 NADARLHM-----AGGEFCGNACMALAAYLANEQGLNQNETTELHLQVSGVERLVTCRIT 111 Query: 112 R---DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + D VDM P+ +++ + G ++ + + + H + Sbjct: 112 KNSGDYQCQVDMPLPL-------------TIEQTVLNDGSDSYDMIVVRYSDFV---HFV 155 Query: 169 FFVEDDLYHYD------LASFGNLLAKHPM----FSEGVNLSIARVTSLESLDLRTWERG 218 VED + G LL + ++ +A + + LD WERG Sbjct: 156 IEVEDIDTEMKRKMLNLVKLIGPLLDTKMLGILLYNIRT-SELAPLIYVSDLDSAVWERG 214 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVF---MTGEAKKE 274 CGS + ++ + +++ GG + + ++D + + G Sbjct: 215 ------CGSGTASVGAYLAWKNQKSMEAAIQQPGGTIQVRAFYDQERLTQLEIEGNVGIV 268 Query: 275 WEG 277 +G Sbjct: 269 AQG 271 >gi|227547141|ref|ZP_03977190.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212374|gb|EEI80270.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 79 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DGS + CGNG RC+ +L + +F ++ K +G +V MG P + Sbjct: 1 ADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHEVKVLGEGQFAVTMGVPAFE 60 Query: 127 WKLIPL 132 +PL Sbjct: 61 PANVPL 66 >gi|227529421|ref|ZP_03959470.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] gi|227350662|gb|EEJ40953.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540] Length = 80 Score = 63.6 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 81 MRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138 RC RF L ++ T G +V D + V+MGEP + +P F Sbjct: 1 ARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRA 56 Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMG 163 ++ +I + VVSMG Sbjct: 57 NKAEKTYIMRAAEQTILCG-VVSMG 80 >gi|254303513|ref|ZP_04970871.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323705|gb|EDK88955.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 264 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 50/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKDS-------HLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ G + CGN R L R K+K+++ T G D + +D Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKAFSKQKNYSI-TCSGESSV---LDVDVRIDGA 111 Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177 + K+ +P S ++++ D + +G V G H IF ++++ Sbjct: 112 QNKFLAKIKMPKFISLEEINVDEYKLGLVRFS----------GINHFIFNIKENKETSFE 161 Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230 DL + F + ++L ++ + E G G+ +C S Sbjct: 162 NIIDLVKKCLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A +R + G L +N+ +++ G + EGK+ IK Sbjct: 215 ALGYYLKKYKNLDR-AKIVQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264 >gi|329928299|ref|ZP_08282187.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5] gi|328937933|gb|EGG34336.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5] Length = 293 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 90/277 (32%), Gaps = 53/277 (19%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +DF K N ++I+ + D A +S D N + +Q+ I DA Sbjct: 2 KQKIDFVKCNPTQNMTILINTKLPPDEHKRVAAKIMSYD-NVYAEQVGFIEQSMKDDADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGI-----LVAKENR 112 F+R+ + + CGN + +L R F E + K Sbjct: 61 FLRM-----AGGEFCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKE 115 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170 D V+M P+ ++D+ G V+ + +R V H + Sbjct: 116 DYRCRVNMPLPV-------------RIDQTVLQDGCSLVDAVVVRYKDFV-----HFVIE 157 Query: 171 VEDDLYHYD------LASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVG 220 VE + G L +++ + + + + L+ WERG Sbjct: 158 VERFDAQMNSSMLAMAKHIGPFLDARMVGILLYNSRI-RELTPLIYVPELNSAVWERG-- 214 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLI 257 CGS + HK S+K GG + + Sbjct: 215 ----CGSGTASVGAYLAWKHKRGVEASIKQPGGTIHV 247 >gi|260495528|ref|ZP_05815653.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33] gi|260196870|gb|EEW94392.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33] Length = 265 Score = 63.2 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 100/292 (34%), Gaps = 52/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++ G + CGN R L S+ K S T +L DG+ Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYSITCSGESSVLDVDVREDGA---- 111 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177 L +P S +++ D + +G V G H IF ++++ Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETSF 160 Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229 DL + F + ++L ++ + E G G+ +C S Sbjct: 161 ENIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A +R + G L +N+ +++ G + EG++ I Sbjct: 214 TALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGPVEIVAEGEVYI 263 >gi|261406672|ref|YP_003242913.1| hypothetical protein GYMC10_2835 [Paenibacillus sp. Y412MC10] gi|261283135|gb|ACX65106.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10] Length = 293 Score = 62.8 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 90/277 (32%), Gaps = 53/277 (19%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +DF K N ++I+ + D A +S D N + +Q+ I DA Sbjct: 2 KQKIDFVKCNPTQNMTILINTKLPPDEHKRVAAKIMSYD-NVYAEQVGFIEQSMKDDADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGI-----LVAKENR 112 F+R+ + + CGN + +L R F E + K Sbjct: 61 FLRM-----AGGEFCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKE 115 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170 D V+M P+ ++D+ G V+ + +R V H + Sbjct: 116 DYRCRVNMPLPV-------------RIDQTILQDGCSLVDAVVVRYKDFV-----HFVIE 157 Query: 171 VEDDLYHYD------LASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVG 220 VE + G L +++ + + + + L+ WERG Sbjct: 158 VERFDAQMNSSMLAMAKHIGPFLDARMVGILLYNSRI-RELTPLIYVPELNSAVWERG-- 214 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLI 257 CGS + HK S+K GG + + Sbjct: 215 ----CGSGTASVGAYLAWKHKRGVEASIKQPGGTIHV 247 >gi|19705053|ref|NP_602548.1| hypothetical protein FN1732 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712971|gb|AAL93847.1| Hypothetical protein FN1732 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 265 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 52/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKDS-------HLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++ G + CGN R L S+ K + T +L DG+ Sbjct: 61 MM---G--GEFCGNASRAFASLLAFRDKDFSKQKNYNITCSGESKVLDVDVRNDGA---- 111 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177 L +P S ++++ D + +G V G H IF ++++ Sbjct: 112 -KNKFLAKIKMPKFLSLEEINVDEYKLGLVRFS----------GINHFIFNIKENKETSF 160 Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229 DL ++ F + ++L ++ + E G G+ +C S Sbjct: 161 ENIIDLVKKYLSNEEYSAF----GIMFF---DSDNLSMKPYVYVKEVGSGVYENSCASGT 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A +R + G L +N+ +++ G + EGK+ I Sbjct: 214 TALGYYLKKCKNLDR-AKIVQPNGWLE-YIIENDEMYIDGPVEIIAEGKIYI 263 >gi|237743006|ref|ZP_04573487.1| diaminopimelate epimerase [Fusobacterium sp. 7_1] gi|229433566|gb|EEO43778.1| diaminopimelate epimerase [Fusobacterium sp. 7_1] Length = 264 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 104/292 (35%), Gaps = 50/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ G + CGN R L K+K+++ T G D + D Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYSI-TCSGESSV---LDVDVREDEA 111 Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177 + K+ +P S +++ D + +G V G H IF ++++ Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETNFE 161 Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230 DL + F + ++L ++ + E G G+ +C S Sbjct: 162 NIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A +R + G L +N+ +++ G + EGK+ IK Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264 >gi|314934890|ref|ZP_07842249.1| diaminopimelate epimerase family protein [Staphylococcus caprae C87] gi|313652820|gb|EFS16583.1| diaminopimelate epimerase family protein [Staphylococcus caprae C87] Length = 280 Score = 59.4 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 57/301 (18%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +V+F+K GN +++ + + S A ++T + +Q+ I + Sbjct: 1 MHRQIVEFSKYNPSGNMTILVHSKHHPEEYASIANQLMAT-THVCCEQVGFIESSDYTNG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L +S + + Sbjct: 60 DQFHLVM-----SGNEFCGNATMSYIHYLQEHQLLESEQFQLKISGCSQTVSCTVHNQQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V M + ++P D + ++ H + ++ Sbjct: 115 YEVGMPQVQ---SIVPRQLIIAGQPYDALELIYETYI-------------HYVIQTQETT 158 Query: 176 YHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL----------RTWERGVGLTA 223 ++ + F H F + I S + + WE Sbjct: 159 MNFKYQVEQFVREQQWHTTFKT---IGIMLFDSRQHFLMPLIYIPEVQSLIWE------K 209 Query: 224 ACGSAACASVVASGCLHKTNRAV---SVKMLGGGLLIE---WHDNNHVF-MTGEAKKEWE 276 +CGS A + V ++TN+ VK GG +++ + ++ + G+ Sbjct: 210 SCGSGAASIGV--LQQYQTNQPCKDFKVKQPGGSIVVSSTYSNKKGYITSIKGQVSTVAT 267 Query: 277 G 277 G Sbjct: 268 G 268 >gi|27467119|ref|NP_763756.1| diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228] gi|27314661|gb|AAO03798.1|AE016744_201 diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228] Length = 279 Score = 59.4 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 96/303 (31%), Gaps = 52/303 (17%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V M K+ + F K+ +F +++ H + +D Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157 Query: 176 YHYD--LASFGNLLAKHPMFSE------GVNLSIARV-TSLESLDLRTWERGVGLTAACG 226 + F + H F N + ++D WE +CG Sbjct: 158 LAIKQRVEDFVSAQTWHRQFKTIGIMLFQQNKQFIYPLIHIPAIDSLIWE------NSCG 211 Query: 227 SAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 S A + V + T+ + V GG +++ + + G+ G+ Sbjct: 212 SGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQA 269 Query: 280 DIK 282 I+ Sbjct: 270 YIE 272 >gi|256846137|ref|ZP_05551595.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2] gi|256719696|gb|EEU33251.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2] Length = 265 Score = 58.6 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 103/289 (35%), Gaps = 50/289 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ G + CGN R L ++K+++ T G E D + D Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---NEVLDVDVREDGA 111 Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177 + K+ +P S +++ D + +G V G H IF ++++ Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKELSFE 161 Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230 DL + F + ++L ++ + E G G+ +C S Sbjct: 162 NIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A +R + G L +NN +++ G + EGK+ Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENNEIYIDGPVEIIAEGKV 261 >gi|254883779|ref|ZP_05256489.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|319643507|ref|ZP_07998130.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] gi|254836572|gb|EET16881.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|317384912|gb|EFV65868.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] Length = 61 Score = 58.2 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 DD+ +L + G L HP+F E N+ V S Sbjct: 5 DDIKDVNLPAIGPKLENHPLFPERTNIEFVEVLSHNK 41 >gi|256028327|ref|ZP_05442161.1| hypothetical protein PrD11_10087 [Fusobacterium sp. D11] gi|289766253|ref|ZP_06525631.1| diaminopimelate epimerase [Fusobacterium sp. D11] gi|289717808|gb|EFD81820.1| diaminopimelate epimerase [Fusobacterium sp. D11] Length = 265 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 99/292 (33%), Gaps = 52/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++ G + CGN R L S K S T +L +G+ Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSITCSGESSVLDVDVRENGA---- 111 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177 L +P S +++ D + +G V G H IF ++++ Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETNF 160 Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229 DL + F + ++L ++ + E G G+ +C S Sbjct: 161 ENIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A +R + G L +N+ +++ G + EGK+ I Sbjct: 214 TALGYYLKKYKNLDR-AKIVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263 >gi|319400468|gb|EFV88702.1| diaminopimelate epimerase [Staphylococcus epidermidis FRI909] Length = 279 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 102/300 (34%), Gaps = 46/300 (15%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF-----F 170 V M K+ + F K+ +F +++ + ++ G A+ F Sbjct: 114 YEVTM------PKVHQVKERFVKLGDQQFKAFEISYDTYIHYVLMCDGVDLAMKQRVEDF 167 Query: 171 VEDDLYHYDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 V +H + G L + F I + + +D WE +CGS A Sbjct: 168 VSAQTWHQQFKTIGVMLFQQDKQF-------IYPLIHIPKIDSLIWE------NSCGSGA 214 Query: 230 CASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + V + T+ + V GG +++ + + G+ G+ I+ Sbjct: 215 ASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|260655345|ref|ZP_05860833.1| diaminopimelate epimerase family protein [Jonquetella anthropi E3_33 E1] gi|260629793|gb|EEX47987.1| diaminopimelate epimerase family protein [Jonquetella anthropi E3_33 E1] Length = 257 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 90/304 (29%), Gaps = 64/304 (21%) Query: 4 SMVDFAKMEGIGN------KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 VDF K+ GN + + L + D+ +Q+ + Sbjct: 1 MKVDFVKVNPAGNVTIFVTSFV-------PVELQPAVAKELMSSDHVGGEQVGFVSGR-- 51 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVR---FLTSRMKRKSFTFETIRGILVAKENRDG 114 +R+ + + CGN R + F +T + + G+ Sbjct: 52 -----RLRM-----AGGEFCGNATRSLAALWAFEEGTTGPAQYTVD-VSGVTSPI----- 95 Query: 115 SISVDM-GEPILDWKLI--PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++V G P + + P D++ + + V+ G H + Sbjct: 96 QVTVQAEGMPGVFRADVLMPQPLGQDEVSLEGYAAFRVDFG----------GIVHYVVEG 145 Query: 172 EDDLYHYDLAS----FGNLLAKHPMFSEGVNLS-IARVTSLESLDLRTWERGVGLTAACG 226 D A +G A MF +G L V + + WE +C Sbjct: 146 APDEKVISAARTQMGYGRWDAFGVMFLQGDRLDPYVEVNGVSGM----WE------NSCA 195 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 S + A R S++ GG L + W V ++G G+ + W Sbjct: 196 SGSSAVACLLQSRTPKGR-ASLRQPGGTLSVSWDGRG-VLLSGPVAIVARGEAFLSELSW 253 Query: 287 IKKN 290 + Sbjct: 254 EEAG 257 >gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 262 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 110/303 (36%), Gaps = 68/303 (22%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K+ GN ++ID +D + L +DN H +Q+ I D Sbjct: 1 MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNH 53 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGI--LVAKENRDGSISV 118 ++++ G + CGN R L R K ++ T G ++A + R+G Sbjct: 54 LQMM---G--GEFCGNASRSFASLLAFRDKDFSKQKIYKITCSGEDEILAVDVREGQ--- 105 Query: 119 DMGEPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174 E K+ +P +S +++ D + +G V G H IF V ++ Sbjct: 106 --TENSFLAKIKMPKFKSLEELKIDNYKLGLVKFS----------GIDHFIFDVAENKED 153 Query: 175 ------------LYHYDLASFGNLLAKHPMFSEGVNLS---IARVTSLESLDLRTWERGV 219 L D ++FG MF + NLS V ++ +E Sbjct: 154 NFEKVIDSVKNYLSDKDFSAFG------IMFFDRQNLSMKPYVYVKD---IESGIFE--- 201 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +C S A +R + G L +N+ +++ G + EGK+ Sbjct: 202 ---NSCASGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKV 256 Query: 280 DIK 282 I+ Sbjct: 257 YIQ 259 >gi|329732780|gb|EGG69128.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU028] Length = 279 Score = 57.1 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 54/304 (17%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP------HAIF 169 V M K+ + F K+ +F +++ V M + + Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDT--YIHYVMMCDDVDLAIKQCVE 165 Query: 170 -FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 FV +H + G +L + ++ + + +++SL WE +C Sbjct: 166 DFVSAQTWHRQFKTIGVMLFQQDKQFIYP------LIHIPAIDSL---IWE------NSC 210 Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 GS A + V + T+ + V GG +++ + + G+ G+ Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQ 268 Query: 279 LDIK 282 I+ Sbjct: 269 AYIE 272 >gi|329732095|gb|EGG68449.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU144] Length = 279 Score = 57.1 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 54/304 (17%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V M K+ + F K+ +F +++ H + +D Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157 Query: 176 YHYD--LASFGNLLAKHPMFSEGVNLSIARVTSL--------ESLDLRTWERGVGLTAAC 225 + F + H F + + + + ++D WE +C Sbjct: 158 LAIKQRVEDFVSAQTWHRQFKT-IGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSC 210 Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 GS A + V + T+ + V GG +L+ + + G+ G+ Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSILVSSRKSGQNEYQTTIKGQVSTVATGQ 268 Query: 279 LDIK 282 I+ Sbjct: 269 AYIE 272 >gi|260887994|ref|ZP_05899257.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|330838527|ref|YP_004413107.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185] gi|260862245|gb|EEX76745.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|329746291|gb|AEB99647.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185] Length = 265 Score = 56.7 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 92/289 (31%), Gaps = 44/289 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ +GN + + + + A+ D + +Q + I Sbjct: 3 LDFIKLSPLGNTTVFLRGEAAQEARAALLAEAMDYD-HLAAEQAGFLVAPHAEEALFRIE 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + S + CGN + F E G + R + + G L Sbjct: 62 M-----SGGEFCGNATLSAAALAAAEGAESRFLVE-CSG--APEPLRAEAHPLGSGRW-L 112 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDLAS-F 183 +P A ++ D F G VS+ G H + DL D Sbjct: 113 ARAEMPPAHEVRRISLDGFSFGGA-------AICVSLPGIAHLVVE-AADLSAADYDELL 164 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLR-----------TWERGVGLTAACGSAACAS 232 L+ + + GV + E +R +ER ACGS + A Sbjct: 165 ARLMRETDADAYGV-VPF-ERMGREHFRIRPYVAVPSAKSHVFER------ACGSGSLAL 216 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +A ++V+ GG LL+E F+ GE G +++ Sbjct: 217 ALA---EGSECGRIAVEQPGGTLLVET--GRRFFLEGEVLISCRGTVEL 260 >gi|296329315|ref|ZP_06871816.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153671|gb|EFG94488.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 263 Score = 56.3 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 52/292 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I + ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKEK-------HLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ G + CGN R L ++K+++ T G E D + D Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---SEVLDVDVRTDGA 111 Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177 + K+ +P S +++ D + +G V G H IF ++++ Sbjct: 112 KNKFLAKIKMPKFISLEEISIDEYKLGLVRFS----------GISHFIFNIKENKETSFE 161 Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACGSAA 229 DL + F + ++L ++ + E G+ +C S Sbjct: 162 NIIDLVKKYLSNEDYSAF----GIMFF---DKDNLSMKPYVYVKELESGIYE-NSCASGT 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A +R V G L +N+ +++ G + EGK+ I Sbjct: 214 TALGYYLKKYKNLDR-AKVVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263 >gi|57865749|ref|YP_189923.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis RP62A] gi|251811536|ref|ZP_04826009.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876692|ref|ZP_06285548.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis SK135] gi|57636407|gb|AAW53195.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis RP62A] gi|251804914|gb|EES57571.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis BCM-HMP0060] gi|281294343|gb|EFA86881.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis SK135] gi|329735791|gb|EGG72071.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU045] Length = 279 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 54/304 (17%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP------HAIF 169 V M K+ + F K+ +F +++ V M + + Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDT--YIHYVMMCDDVDLAIKQCVE 165 Query: 170 -FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 FV +H + G +L + ++ + + +++SL WE +C Sbjct: 166 DFVSAQTWHRQFKTIGVMLFQQDKQFIYP------LIHIPAIDSL---IWE------NSC 210 Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 GS A + V + T+ + V GG +++ + + G+ G+ Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQ 268 Query: 279 LDIK 282 I+ Sbjct: 269 AYIE 272 >gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] Length = 45 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 2 QGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 45 >gi|293367479|ref|ZP_06614137.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318425|gb|EFE58813.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W2(grey)] Length = 279 Score = 55.5 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 96/306 (31%), Gaps = 58/306 (18%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D + + S + CGN + +L R+ + + K + Sbjct: 60 DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V M K+ + F K+ +F +++ H + +D Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157 Query: 176 YHYD--LASFGNLLAKHPMF---------SEGVNLSIARV-TSLESLDLRTWERGVGLTA 223 + F + H F + + ++D WE Sbjct: 158 LAIKQCVEDFVSAQTWHRQFKTIGVMLFQPDK---QFIYPLIHIPAIDSLIWE------N 208 Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276 +CGS A + V + T+ + V GG +++ + + G+ Sbjct: 209 SCGSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVAT 266 Query: 277 GKLDIK 282 G+ I+ Sbjct: 267 GQAYIE 272 >gi|331083333|ref|ZP_08332446.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404414|gb|EGG83959.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium 6_1_63FAA] Length = 259 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 39/261 (14%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 L + H +Q+ + QD S + + CGN R L+ Sbjct: 28 PAISRELLCMEELHGEQVGFVEKMQDGSFHMQMM-------GGEFCGNATRSFGYLLSML 80 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 + K+ + V+ + ++VDM + +PL ++ V Sbjct: 81 SEEKAEDVW----VDVSGSQKKLKVAVDMEKGT-ARTEMPLPMEIKEISVKEEKYSMVVF 135 Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHY----DLASFGNL-LAKHPMFSEGVNLSIARVTS 206 + + V S P A FV++ + ++G + L + M + V S Sbjct: 136 EGICHIIVNSA--PKAQEFVDELIEKAKRVCPCDAYGVMFLEESKMTP------VVYVES 187 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNH 264 S+ WE ++CGS + + V T V + GG + +N Sbjct: 188 TTSM---VWE------SSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGK 238 Query: 265 VF---MTGEAKKEWEGKLDIK 282 VF M G E K+DIK Sbjct: 239 VFSCKMGGPVTISEEMKVDIK 259 >gi|302061755|ref|ZP_07253296.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] Length = 40 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 17/39 (43%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD 42 ++ F KM G+GN +V+D+ H +I Sbjct: 1 MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRH 39 >gi|262066039|ref|ZP_06025651.1| putative diaminopimelate epimerase [Fusobacterium periodonticum ATCC 33693] gi|291380290|gb|EFE87808.1| putative diaminopimelate epimerase [Fusobacterium periodonticum ATCC 33693] Length = 261 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 109/298 (36%), Gaps = 54/298 (18%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K+ GN ++ID +D + L +DN H +Q+ I + Sbjct: 1 MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKNN-------H 53 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120 ++++ G + CGN R L R K ++ T G D ++VD+ Sbjct: 54 LQMM---G--GEFCGNASRAFASLLAFRDKTFSKQKIYKITCSG-------EDEVLNVDI 101 Query: 121 GEPILDWK-----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---E 172 E + +P +S +++ D + +G V G H IF + + Sbjct: 102 REGQTENSFLAKIKMPKFKSLEEIKIDSYKLGLVKFS----------GIDHFIFDIAENK 151 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACG 226 +D + + S N L+ + G E+L ++ + E G+ +C Sbjct: 152 EDNFEKIIDSVKNYLSDKDFSAFG-----IMFFDKENLFMKPYVYVKEVESGIFE-NSCA 205 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 S A +R + G L +N+ +++ G + EG + +K G Sbjct: 206 SGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGSVYVKRG 261 >gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] Length = 258 Score = 53.6 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 108/295 (36%), Gaps = 54/295 (18%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K+ GN ++ID +D + L +DN H +Q+ I D Sbjct: 1 MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNH 53 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120 ++++ G + CGN R L R K ++ T G D ++VD+ Sbjct: 54 LQMM---G--GEFCGNASRAFASLLAFRDKTFSKQKIYKITCSG-------EDEVLAVDV 101 Query: 121 GEPILDWK-----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---E 172 E + +P +S +++ D + +G V + H IF + + Sbjct: 102 REGQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKFSGIG----------HFIFDIAKNK 151 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACG 226 +D + + S N L+ + G E+L ++ + E G+ +C Sbjct: 152 EDNFEKVIDSVKNYLSDKDFSAFG-----IMFFDRENLSMKPYVYVKEVESGIFE-NSCA 205 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S A +R + G L +N+ +++ G + EGK+ I Sbjct: 206 SGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYI 258 >gi|260588942|ref|ZP_05854855.1| conserved hypothetical protein [Blautia hansenii DSM 20583] gi|260540721|gb|EEX21290.1| conserved hypothetical protein [Blautia hansenii DSM 20583] Length = 259 Score = 53.6 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 41/262 (15%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 L + H +Q+ + QD S + + CGN R L+ Sbjct: 28 PAISRELLCMEELHGEQVGFVEKMQDGSFHMQMM-------GGEFCGNATRSFGYLLSML 80 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL-IPLARSFDKMDRDRFHIGPVN 150 + K+ + V+ + ++VDM + ++ +P+ + + +++ + V Sbjct: 81 SEEKAEDVW----VDVSGSKKKLKVTVDMEKGTARTEMSLPMEMTEVSVKEEKYSM--VV 134 Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHY----DLASFGNL-LAKHPMFSEGVNLSIARVT 205 + + V S P A FV++ + ++G + L + M + V Sbjct: 135 FEGICHIIVNSA--PKAQEFVDELIEEAKRVCPCDAYGVMFLEESKMTP------VVYVE 186 Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNN 263 S S+ WE ++CGS + + V T V + GG + +N Sbjct: 187 STTSM---VWE------SSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENG 237 Query: 264 HVF---MTGEAKKEWEGKLDIK 282 VF M G E K+DIK Sbjct: 238 KVFSCKMGGPVTISEEMKVDIK 259 >gi|282917824|ref|ZP_06325574.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp. aureus D139] gi|283767554|ref|ZP_06340469.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19] gi|282318109|gb|EFB48469.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp. aureus D139] gi|283461433|gb|EFC08517.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19] Length = 273 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 43/299 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169 V M + + I + K + ++ PVN + +V Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228 +V + +++ + G +L + + + WE +CGS Sbjct: 168 YVREQQWNHKYKTVGMMLFNEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214 Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V + + + +V GG +L+ + G+ GK I+ Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|329315155|gb|AEB89568.1| hypothetical protein SAT0131_02669 [Staphylococcus aureus subsp. aureus T0131] Length = 273 Score = 52.4 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 39/297 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173 V M + +++P + I ++ P V+ H + FV + Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171 Query: 174 DLYHYDLASFGNLL--AKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAAC 230 + + + G +L +H + + + WE +CGS Sbjct: 172 QQWSHKYKTVGMMLFDEQH---------QFLQPLIYIPEIQSLIWE------NSCGSGTA 216 Query: 231 ASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V + + + +V GG +L+ + G+ GK I+ Sbjct: 217 SIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|332798764|ref|YP_004460263.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1] gi|332696499|gb|AEE90956.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1] Length = 264 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 85/278 (30%), Gaps = 57/278 (20%) Query: 26 CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85 C + S D H +Q+ I + + + + CGN Sbjct: 22 CPQSYYSAVAEKAMNYDYLHAEQVGFIVPPSKKDSVIRLEM-----AGGEFCGNATLSAA 76 Query: 86 RFLT--SRMKRKSFTFET--IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141 ++ +++F+ + + + + + + ++P A+ DKM+ Sbjct: 77 AYVRYKGLSDKENFSIDASGAAEPIRCRVEKVNTYCYN------TSCIMPPAKRIDKMEL 130 Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-----------YHYDLASFGNLLA-- 188 + + ++ V G H + +++ D + G + Sbjct: 131 E------LQGKIIKGYIVEFEGISHFVLETKEEFVEYSEVTQALKKAIDTNAIGVIPYET 184 Query: 189 -KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 + + V ++ +ERG CGS + A + +R + Sbjct: 185 IRDDTYKIKP---FVYVK---EINSNVFERG------CGSGSLALGTYLKRVRGISREIR 232 Query: 248 VKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 V GG + + D V +T EG++ I Sbjct: 233 VVQPGGVIRVGIADEFFISTDVILT------CEGRILI 264 >gi|21284123|ref|NP_647211.1| hypothetical protein MW2394 [Staphylococcus aureus subsp. aureus MW2] gi|49487253|ref|YP_044474.1| hypothetical protein SAS2361 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650980|ref|YP_187276.1| hypothetical protein SACOL2479 [Staphylococcus aureus subsp. aureus COL] gi|82752066|ref|YP_417807.1| hypothetical protein SAB2353c [Staphylococcus aureus RF122] gi|87160489|ref|YP_495049.1| hypothetical protein SAUSA300_2414 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196406|ref|YP_501229.1| hypothetical protein SAOUHSC_02770 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222579|ref|YP_001333401.1| hypothetical protein NWMN_2367 [Staphylococcus aureus subsp. aureus str. Newman] gi|161510671|ref|YP_001576330.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140401|ref|ZP_03564894.1| hypothetical protein SauraJ_02051 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734105|ref|ZP_04868270.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH130] gi|258451224|ref|ZP_05699257.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262049914|ref|ZP_06022775.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30] gi|262052652|ref|ZP_06024845.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3] gi|282920460|ref|ZP_06328183.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284025490|ref|ZP_06379888.1| hypothetical protein Saura13_12922 [Staphylococcus aureus subsp. aureus 132] gi|294849020|ref|ZP_06789765.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754] gi|297209707|ref|ZP_06926103.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910720|ref|ZP_07128170.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH70] gi|304379670|ref|ZP_07362403.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21205566|dbj|BAB96259.1| MW2394 [Staphylococcus aureus subsp. aureus MW2] gi|49245696|emb|CAG44175.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285166|gb|AAW37260.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|82657597|emb|CAI82042.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87126463|gb|ABD20977.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203964|gb|ABD31774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375379|dbj|BAF68639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160369480|gb|ABX30451.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727800|gb|EES96529.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH130] gi|257861016|gb|EEV83831.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259159460|gb|EEW44511.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3] gi|259161990|gb|EEW46571.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30] gi|269942051|emb|CBI50463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282594406|gb|EFB99392.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294824399|gb|EFG40823.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754] gi|296885380|gb|EFH24317.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887700|gb|EFK82895.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH70] gi|304341846|gb|EFM07752.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196317|gb|EFU26670.1| hypothetical protein CGSSa01_01196 [Staphylococcus aureus subsp. aureus CGS01] gi|320139179|gb|EFW31061.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142566|gb|EFW34374.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329726727|gb|EGG63188.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21189] gi|329730442|gb|EGG66832.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21193] Length = 273 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173 V M + +++P + I ++ P V+ H + FV + Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 + + + G +L + + + WE +CGS + Sbjct: 172 QQWSHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|15925460|ref|NP_372994.1| hypothetical protein SAV2470 [Staphylococcus aureus subsp. aureus Mu50] gi|15928049|ref|NP_375582.1| hypothetical protein SA2258 [Staphylococcus aureus subsp. aureus N315] gi|148268907|ref|YP_001247850.1| hypothetical protein SaurJH9_2497 [Staphylococcus aureus subsp. aureus JH9] gi|150394982|ref|YP_001317657.1| hypothetical protein SaurJH1_2546 [Staphylococcus aureus subsp. aureus JH1] gi|156980785|ref|YP_001443044.1| hypothetical protein SAHV_2454 [Staphylococcus aureus subsp. aureus Mu3] gi|253315492|ref|ZP_04838705.1| hypothetical protein SauraC_04967 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007244|ref|ZP_05145845.2| hypothetical protein SauraM_12265 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794809|ref|ZP_05643788.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258407489|ref|ZP_05680632.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258422182|ref|ZP_05685094.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258439575|ref|ZP_05690321.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258442868|ref|ZP_05691428.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446431|ref|ZP_05694586.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258450452|ref|ZP_05698544.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258455171|ref|ZP_05703131.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269204103|ref|YP_003283372.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus ED98] gi|282893922|ref|ZP_06302154.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117] gi|282926961|ref|ZP_06334586.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295405165|ref|ZP_06814978.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819] gi|296276871|ref|ZP_06859378.1| hypothetical protein SauraMR_11009 [Staphylococcus aureus subsp. aureus MR1] gi|297244220|ref|ZP_06928110.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|13702420|dbj|BAB43561.1| SA2258 [Staphylococcus aureus subsp. aureus N315] gi|14248244|dbj|BAB58632.1| similar to diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Mu50] gi|147741976|gb|ABQ50274.1| Diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus JH9] gi|149947434|gb|ABR53370.1| diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus JH1] gi|156722920|dbj|BAF79337.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788781|gb|EEV27121.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257841001|gb|EEV65452.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257841613|gb|EEV66050.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257847351|gb|EEV71353.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851989|gb|EEV75923.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854499|gb|EEV77447.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856544|gb|EEV79453.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257862382|gb|EEV85150.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262076393|gb|ACY12366.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus ED98] gi|282591008|gb|EFB96082.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763980|gb|EFC04108.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117] gi|285818131|gb|ADC38618.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981] gi|294970110|gb|EFG46128.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819] gi|297178998|gb|EFH38243.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|312830814|emb|CBX35656.1| diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130888|gb|EFT86873.1| hypothetical protein CGSSa03_12295 [Staphylococcus aureus subsp. aureus CGS03] gi|329723367|gb|EGG59896.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21172] Length = 273 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173 V M + +++P + I ++ P V+ H + FV + Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKALEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 + + + G +L + + + WE +CGS + Sbjct: 172 QQWSHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|34763520|ref|ZP_00144460.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886803|gb|EAA23936.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 265 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 102/289 (35%), Gaps = 50/289 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 ++ G + CGN R L ++K+++ T G E D + D Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---NEVLDVDVREDGA 111 Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177 + K+ +P S +++ D + +G V G H IF ++++ Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKEVSFE 161 Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230 DL + F + ++L ++ + E G G+ +C S Sbjct: 162 NIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A +R + G L +N+ + + G + EGK+ Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261 >gi|253730147|ref|ZP_04864312.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726124|gb|EES94853.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 273 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNGQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173 V M + +++P + I ++ P V+ H + FV Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRK 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 +++ + G +L + + + WE +CGS + Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|258424990|ref|ZP_05687861.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257844824|gb|EEV68867.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 273 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 43/299 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169 V M + + I + K + ++ PVN + +V Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228 +V + +++ + G +L + + + WE +CGS Sbjct: 168 YVREQQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214 Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V + + + +V GG +L+ + G+ GK I+ Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|298695738|gb|ADI98960.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 273 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-FFVED 173 V M + + I + K + + V+++ N + + H + +V + Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAI-EIIYETYVHYVIPVNQVTIEI--QHLVETYVRE 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 +++ + G +L + + + WE +CGS + Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|242372515|ref|ZP_04818089.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1] gi|242349732|gb|EES41333.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 103/305 (33%), Gaps = 43/305 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +++F+K GN +++ + + + A ++T + +Q+ I + Sbjct: 1 MHRQVIEFSKYNPSGNMTILVHSKHHPNEYATIANQLMAT-THVCCEQVGFIESTNHNNW 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSI 116 + + ++ S + CGN + +L + ++ K + Sbjct: 60 ETYHLVM----SGNEFCGNATMSYIHYLQEHQLLQHSQCQLKVSGYSQLVPCKVHNHRCY 115 Query: 117 SVDMGEP-ILDWKLIPLARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFF 170 V M + + + + +A + + + P + + V F Sbjct: 116 EVGMPQVQQITPRQLVIAGQLYHVLELTYESYIHFVVPTQDISVSFKKQVE-------QF 168 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAA 229 V ++ + + G +L F + + + WE +CGS A Sbjct: 169 VRTQRWNVNYKTIGVML-----FDTQQ--QFLQPLIYIPEVQSLIWE------NSCGSGA 215 Query: 230 CASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-FMT---GEAKKEWEGK--LDIK 282 + V ++ + V GG +L+ N + ++T G+ G+ ++ + Sbjct: 216 ASIGVFQQYRTNQASNDFKVNQPGGSILVSSTFNEQMGYLTSIKGQVSTVATGQAYIEQE 275 Query: 283 TGKWI 287 T ++ Sbjct: 276 TKTYL 280 >gi|294784733|ref|ZP_06750021.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|294486447|gb|EFG33809.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 265 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 98/291 (33%), Gaps = 54/291 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKISEEIMKETNLYAEQVGFI-------GDNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++ G + CGN R L S+ K T +L DG+ Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYKITCSGESSVLDVDVREDGA---- 111 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 L +P S +K+ D + +G V G H IF ++++ Sbjct: 112 -KNKFLAKIKMPKFISLEKIKIDGYKLGLVRFS----------GISHFIFNIKEN-KEVS 159 Query: 180 LASFGNLL------AKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSA 228 + NL+ + F + ++L ++ + E G G+ +C S Sbjct: 160 FENIINLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASG 212 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A +R + G L N+ + + G + EGK+ Sbjct: 213 TTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIKNDEMCIDGPVEIIAEGKV 261 >gi|49484684|ref|YP_041908.1| hypothetical protein SAR2557 [Staphylococcus aureus subsp. aureus MRSA252] gi|257423952|ref|ZP_05600381.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426635|ref|ZP_05603037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429270|ref|ZP_05605657.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257431916|ref|ZP_05608279.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257434877|ref|ZP_05610928.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282902383|ref|ZP_06310276.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus C160] gi|282906811|ref|ZP_06314659.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909787|ref|ZP_06317596.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912035|ref|ZP_06319831.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WBG10049] gi|282915330|ref|ZP_06323107.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M899] gi|282921053|ref|ZP_06328771.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp. aureus C427] gi|282925959|ref|ZP_06333607.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp. aureus C101] gi|283959250|ref|ZP_06376691.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497725|ref|ZP_06665579.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp. aureus 58-424] gi|293511305|ref|ZP_06670001.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus M809] gi|293549913|ref|ZP_06672585.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M1015] gi|295429057|ref|ZP_06821679.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589451|ref|ZP_06948092.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8] gi|49242813|emb|CAG41538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272970|gb|EEV05072.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276266|gb|EEV07717.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279751|gb|EEV10338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282795|gb|EEV12927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285473|gb|EEV15589.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282312788|gb|EFB43192.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp. aureus C101] gi|282315468|gb|EFB45852.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp. aureus C427] gi|282321051|gb|EFB51385.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M899] gi|282323731|gb|EFB54047.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326361|gb|EFB56665.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329710|gb|EFB59231.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596842|gb|EFC01801.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus C160] gi|283788842|gb|EFC27669.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290918960|gb|EFD96036.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M1015] gi|291096656|gb|EFE26914.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp. aureus 58-424] gi|291465931|gb|EFF08461.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus M809] gi|295126816|gb|EFG56460.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577962|gb|EFH96675.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8] gi|312437110|gb|ADQ76181.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH60] gi|315194971|gb|EFU25359.1| hypothetical protein CGSSa00_02877 [Staphylococcus aureus subsp. aureus CGS00] Length = 273 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 94/295 (31%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAI-FFVED 173 V M + +++P + I ++ ++ V+ H + +V + Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVSQVTTEIQHLVETYVRE 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 +++ + G +L + + + WE +CGS + Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|302334095|gb|ADL24288.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus JKD6159] Length = 273 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 43/299 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 + + + S + CGN + L + ++ ++ + Sbjct: 60 NNFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169 V M + + I + K + ++ PVN + +V Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228 FV + ++ + G +L + + + WE +CGS Sbjct: 168 FVREQQWNDKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214 Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V + + + +V GG +L+ + G+ GK I+ Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|306821068|ref|ZP_07454686.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550904|gb|EFM38877.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 275 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 95/308 (30%), Gaps = 63/308 (20%) Query: 4 SMVDFAKMEGIGN-KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F K+ + N + ++D +I + L N + +Q+ + + + Sbjct: 1 MQLEFVKVNPVENMTVFILDEVEKAKHI--EIAKKLMDYSNLYAEQVGFVEKMKTDDDNI 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSF------TFETIR--GILVAKENR 112 +R+ G + CGN R + L ++ ET +L + Sbjct: 59 AVRLQMMGG---EFCGNATRSLAALLVHYDHKSIRNIGDNYYVDVETSGLEKVLRCTVQK 115 Query: 113 DGSIS----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + M P + L DK R ++H + + Sbjct: 116 LDDFTYMSKIAMPLPSEMPTELLLD---DKYKLYRVDFDGISHFIID------------V 160 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI-----------ARVTSLESLDLRTWER 217 VED ++L + F + V + +SL WER Sbjct: 161 KTVEDKNQIFNLIKNYIDSENYDAF----GIMFYDFDIDYLTPLVYVKATDSLF---WER 213 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKK 273 +C S A A ++ + + GG L I+ V + G+ + Sbjct: 214 ------SCASGTSAVGAALSYIYSKELNLDISQPGGVLSIQTRLKYGVISDINLNGKVEI 267 Query: 274 EWEGKLDI 281 G +++ Sbjct: 268 VARGTVNV 275 >gi|213861748|ref|ZP_03386218.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 50 Score = 50.5 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 18/45 (40%) Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 L ++ T G +V D + V+MGEP + +P Sbjct: 2 LKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF 46 >gi|255019199|ref|ZP_05291325.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515] Length = 53 Score = 50.5 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 214 TWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIE 258 T+ERGVG T ACG+A A + L K ++V GG + + Sbjct: 1 TFERGVGFTNACGTAMSACSLIKKILDKDTFETPLNVYNDGGRVQVT 47 >gi|237742813|ref|ZP_04573294.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13] gi|229430461|gb|EEO40673.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13] Length = 265 Score = 50.5 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 98/290 (33%), Gaps = 52/290 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K++ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKIDPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++ G + CGN R L S+ K T +L DG+ Sbjct: 61 MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYKITCSGESSVLDVDVREDGA---- 111 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177 L +P S +++ D + +G V G H IF ++++ Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKEVSF 160 Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229 DL + F + ++L ++ + E G G+ +C S Sbjct: 161 ENIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A +R + G L +N+ + + G + EGK+ Sbjct: 214 TALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261 >gi|29833535|ref|NP_828169.1| phenazine biosynthesis protein [Streptomyces avermitilis MA-4680] gi|29610658|dbj|BAC74704.1| putative phenazine biosynthesis protein [Streptomyces avermitilis MA-4680] Length = 272 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 29/234 (12%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG 114 + D +R +EV CG+ L S F T G+L+A DG Sbjct: 55 EGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTSGTHEGPVRFATRSGVLIATPREDG 113 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 SI++D L IP + + + + G P+ + + Sbjct: 114 SITLDFPTAPLTPVEIPEGVA-EALGAEPL-------------TACDTG-PNVGDLLIEL 158 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTW--ERGVGLTAACGSAA 229 + L +SE ++ AR R + G+ + + Sbjct: 159 ADEKTVRGLAPDLRALARYSERGIIATARAEDPAQGHDFVSRCFFPNVGIDEDPV--TGS 216 Query: 230 CASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +A + R + G + E D+ +TG A +G+L Sbjct: 217 AHTALAPFWSQRLGRPDLTGLQASPRSGHVRTELRDD-RTLLTGRAVTVIDGEL 269 >gi|295704266|ref|YP_003597341.1| phenazine biosynthesis protein [Bacillus megaterium DSM 319] gi|294801925|gb|ADF38991.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium DSM 319] Length = 296 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 17/150 (11%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V + D+ +++ + ++ F++ I A D IR G E CG Sbjct: 24 IVFNG----DDFSAEEMQMIA--YQVQFNETAFIMKSSRA--DLRIRYFTP-GQEADLCG 74 Query: 79 NGM--RCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISVDMGEPILDWKLIPLARS 135 + + +++ + +FT ET GIL NR+G + M + + P + S Sbjct: 75 HATVASLYALYSKNKLPKTTFTVETNAGILPMTVQNRNGQPVITMSQAS--PQFHPFSGS 132 Query: 136 FDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164 +K+ + HI ++ S GN Sbjct: 133 KEKLAKALNLHIDDLDQRLPIVYG--STGN 160 >gi|283471689|emb|CAQ50900.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ST398] Length = 273 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + S N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + L + ++ ++ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173 V M + +++P + I ++ P V+ H + +V Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVETYVRK 171 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232 +++ + G +L + + + WE +CGS + Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218 Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 V + + + +V GG +L+ + G+ GK I+ Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|255524201|ref|ZP_05391161.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512186|gb|EET88466.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 31 Score = 49.7 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD 28 + F KM+G GN +VID R Sbjct: 1 MKFTKMQGTGNDFIVIDDRKNSF 23 >gi|294777152|ref|ZP_06742609.1| conserved domain protein [Bacteroides vulgatus PC510] gi|294449021|gb|EFG17564.1| conserved domain protein [Bacteroides vulgatus PC510] Length = 50 Score = 49.4 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 11/27 (40%) Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLES 209 G L HP+F E N+ V S Sbjct: 4 IGPKLENHPLFPERTNIEFVEVLSHNK 30 >gi|330684131|gb|EGG95880.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU121] Length = 279 Score = 49.4 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 95/304 (31%), Gaps = 53/304 (17%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH-DFQDAS 59 M +++F+K GN +++ + + + N L + +Q+ I + + Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSQHHPSDY-AKIANRLMASTHVCCEQVGFIESNNLNHG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGS 115 D + + S + CGN + +L ++ ++ + Sbjct: 60 DDCRLVM-----SGNEFCGNATMSYMHYLQEHQRLTAQQCHLNVSGCDDLVPCTIHGHQQ 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V M + + + HI ++ + + H + +E+ Sbjct: 115 YEVGMPQAQ-------------HVTTEYLHIAQHMWQAIKITYESYV---HYVIPIEEIT 158 Query: 176 YHY--DLASFGNLLAKHPMFSE-GV---NLS------IARVTSLESLDLRTWERGVGLTA 223 + +A F + G+ N+ + + ++SL WE Sbjct: 159 ATFKQQVAQFVREQQWDEQYKTIGIMLFNVQEQYLHPLIYIPEVKSL---IWE------N 209 Query: 224 ACGSAACASVV-ASGCLHKTNRAVSVKMLGGGLLIE----WHDNNHVFMTGEAKKEWEGK 278 +CGS A + V + ++ V GG + + + + G G+ Sbjct: 210 SCGSGAASIGVFHNYQSQQSCEDYIVYQPGGSISVTSAYCSENGYRTSIKGRVSTVARGQ 269 Query: 279 LDIK 282 I+ Sbjct: 270 AYIE 273 >gi|319891366|ref|YP_004148241.1| diaminopimelate epimerase [Staphylococcus pseudintermedius HKU10-03] gi|317161062|gb|ADV04605.1| diaminopimelate epimerase [Staphylococcus pseudintermedius HKU10-03] gi|323465461|gb|ADX77614.1| diaminopimelate epimerase, putative [Staphylococcus pseudintermedius ED99] Length = 269 Score = 49.0 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 90/295 (30%), Gaps = 57/295 (19%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V F+K GN +++D + L + +Q+ I D + + + Sbjct: 4 VHFSKFNPSGNMTVLVDSQHDPSQY-RHIAQQLMKSSHVGCEQVGFIVD-DEGELPHQLV 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + S + CGNG +R+L R T + D + + E Sbjct: 62 M-----SGQEFCGNGTLSFIRYLKDRN------LLTTSSFKLKVSGMDTPVHCAIHE--- 107 Query: 126 DWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIF--------------- 169 + K +R + I V L + H +F Sbjct: 108 TPQQFETTLPQPKKILERQYKIDDVLFEGLEIQYDTY---QHFVFPITVWSEKLASSIES 164 Query: 170 FVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV + + L + G +L ++ + V ++S+ WE +CG Sbjct: 165 FVRAEEWPEHLTAVGLMLYDTLHQRLYP------LIYVPQIDSI---IWE------QSCG 209 Query: 227 SAACAS-VVASGCLHKTNRAVSVKMLGGGLL--IEWHDNN-HVFMTGEAKKEWEG 277 S + V + + + GG L ++ +D V + G G Sbjct: 210 SGTGSVGVYEAYQNQLEHLEKEIVQPGGALTAIVDHNDEGYQVAIKGNVSTVATG 264 >gi|226311358|ref|YP_002771252.1| hypothetical protein BBR47_17710 [Brevibacillus brevis NBRC 100599] gi|226094306|dbj|BAH42748.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGIL 106 + D IR + E+ CG+ L + K FET G++ Sbjct: 50 FLMPSDHPEADFRIRYFSP-SVEIDFCGHATVGSAWLLATERGWLEKGSRIVFETNVGLI 108 Query: 107 VAKE-NRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + DG + V+M + K I + S + + ++ + + S GN Sbjct: 109 PVQLMMEDGQLQRVEMTQIRPSVKEIDVD-SEEVARLVGITLADLDDRYPMK--LASTGN 165 Query: 165 PHAIFFV 171 H + V Sbjct: 166 RHLLVPV 172 >gi|269121996|ref|YP_003310173.1| phenazine biosynthesis protein PhzF family [Sebaldella termitidis ATCC 33386] gi|268615874|gb|ACZ10242.1| phenazine biosynthesis protein PhzF family [Sebaldella termitidis ATCC 33386] Length = 287 Score = 48.2 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D++T D + + F++ + + ++A D +R G E+ CG+ V+ Sbjct: 26 DDLTEDEMQKAAGK--IGFNETVFLLASKEA--DIKMRYFTP-GHEMNLCGHATIAGVKA 80 Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144 L + +K T ET+ GI+ + G+ + K +P K D+ + Sbjct: 81 LFEKENKKIKTVETLSGIIDVNMEVQNT-----GKTFISMKQLPAQFEEFKGDKAKL 132 >gi|239932542|ref|ZP_04689495.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672] gi|291440907|ref|ZP_06580297.1| phenazine biosynthesis protein [Streptomyces ghanaensis ATCC 14672] gi|291343802|gb|EFE70758.1| phenazine biosynthesis protein [Streptomyces ghanaensis ATCC 14672] Length = 269 Score = 47.8 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 37/239 (15%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L + + F T G+L A + D Sbjct: 52 PAGGEADWALRWFTPT-TEVAMCGHATLATAHVLHTTGAHKGPVRFATRSGVLAATPDED 110 Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 GS+++D L +P +A + R F GP L V + + + + Sbjct: 111 GSLTLDFPTAPLTPVDLPEGVADALGAAPRTAFDTGPKIGDLL-----VEVADERTVHAL 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-------TSLESLDLRTWERGVGLTAA 224 DL S ++A + + + + Sbjct: 166 RPDLKALGALSERGIIATARAENPALGYDFVSRCFFPNLGIDEDPV-------------- 211 Query: 225 CGSAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + +A + R V + G + E ++G A EG+L Sbjct: 212 --TGSAHTALAPYWSERLGRPVLTGLQASPRSGRVRTEVR-GERTLLSGRAVTVIEGEL 267 >gi|294498944|ref|YP_003562644.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium QM B1551] gi|294348881|gb|ADE69210.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium QM B1551] Length = 296 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKE-N 111 + + D IR G E CG+ + +++ + +FT ET GIL N Sbjct: 53 KSSRADLRIRYFTP-GQEADLCGHAT-VASLYALHSKNKLPKTTFTVETNAGILPMTVQN 110 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164 R+G + M + + P + S +K+ + HI ++ S GN Sbjct: 111 RNGQPVITMSQAS--PQFHPFSGSKEKLAKALNLHIDDLDQRLPIVYG--STGN 160 >gi|255521954|ref|ZP_05389191.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175] Length = 66 Score = 47.4 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 7/62 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 + F K+ G N ++D H SD A L ++ D I + + Sbjct: 3 TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGIXYVTKSSE 62 Query: 58 AS 59 Sbjct: 63 VG 64 >gi|121608031|ref|YP_995838.1| proline racemase [Verminephrobacter eiseniae EF01-2] gi|121552671|gb|ABM56820.1| proline racemase [Verminephrobacter eiseniae EF01-2] Length = 317 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT 89 DA A + + D I+ L+ D + A + N G CG+G + V Sbjct: 43 DAWRAATVLEPRGNDVIVGALLCPPVDPASAAGVIFFNNTGYLA-MCGHGTIGLVASLAY 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 LGRIAPGEHRIETPAGTVGATLHEDGSVSV 131 >gi|196035578|ref|ZP_03102982.1| phenazine biosynthesis protein PhzF family [Bacillus cereus W] gi|195991879|gb|EDX55843.1| phenazine biosynthesis protein PhzF family [Bacillus cereus W] Length = 299 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ S T ET GIL + N +G + M + Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIVINENGETFIKMRQAAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|239995939|ref|ZP_04716463.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126] Length = 38 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGE 270 K + V V + GG L I W ++V MTG Sbjct: 1 AIGQIQGKLGKDVRVDLPGGSLRIRWPGPDNVLKMTGP 38 >gi|255065707|ref|ZP_05317562.1| putative epimerase [Neisseria sicca ATCC 29256] gi|255050025|gb|EET45489.1| putative epimerase [Neisseria sicca ATCC 29256] Length = 321 Score = 46.7 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 12/130 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA 108 L+ + + A + N G CG+G +++ L R+ + T ET G + Sbjct: 67 LLCKPKSPASSAGVIFFNNSGYLG-MCGHGTIGLIKTLQHLKRIDIGTHTIETPVGDVRC 125 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + DGS+SV + +P R + D IG + + N H Sbjct: 126 TLHEDGSVSV---------RNVPSYRYRKDVSLDVEGIGSITGDIAWGGNWFFLVNDHGC 176 Query: 169 FFVEDDLYHY 178 D+L Sbjct: 177 TIAPDNLEQL 186 >gi|87306830|ref|ZP_01088976.1| hypothetical protein DSM3645_00215 [Blastopirellula marina DSM 3645] gi|87290203|gb|EAQ82091.1| hypothetical protein DSM3645_00215 [Blastopirellula marina DSM 3645] Length = 265 Score = 46.7 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 57/246 (23%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD 113 +R EV CG+ FL K + F T G+L A D Sbjct: 52 QEESRFRLRWFTP-AVEVDLCGHATLAAAHFLWETGKAATDATIEFNTRSGVLTAVRIND 110 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 I L D+++ G + L + ++ G VE Sbjct: 111 R---------------IELDFPIDEIEAGDPPTGLIAALGCKP---IATGRNRRDVLVE- 151 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA---------A 224 +L S + +A + + + RG G A Sbjct: 152 VASEAELRSVAPDFRR-----------LAEIRARGVIVTC---RGDGENYEFLSRFFAPA 197 Query: 225 CG------SAACASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 CG + + + + +T RA GG L + D + + G A Sbjct: 198 CGIDEDPVTGSAHCALVTYWAPKWKKQTLRAFQCSQRGGELEVT-LDGDRAKLRGAAVTV 256 Query: 275 WEGKLD 280 G+LD Sbjct: 257 LRGELD 262 >gi|126651888|ref|ZP_01724089.1| hypothetical protein BB14905_14745 [Bacillus sp. B14905] gi|126591356|gb|EAZ85464.1| hypothetical protein BB14905_14745 [Bacillus sp. B14905] Length = 299 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 10/128 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106 + +A+ + IR EV CG+ + ++ K FE+ G++ Sbjct: 51 FLLPSTNANANYKIRYFTPT-KEVDFCGHATLGTAWLMATKYNWIDKDDKIVFESNIGLI 109 Query: 107 VAK--ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 K + V M + K I ++ + D I + + + G Sbjct: 110 PVKWLMENNQLTRVSMTQVRPQVKSIDIS---PAVVADLVGILETDIDDRYPIKIANTGV 166 Query: 165 PHAIFFVE 172 PH + V+ Sbjct: 167 PHLMVPVK 174 >gi|229122943|ref|ZP_04252151.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 95/8201] gi|228660527|gb|EEL16159.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 95/8201] Length = 299 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WK 128 +G + L R ++ S T ET GIL + N +G + M P Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LA S D P+ + N V+ Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|255019173|ref|ZP_05291299.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515] Length = 72 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQI 49 + + F K+ G N ++D G SDA A L +++ D I Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGI 54 >gi|30263374|ref|NP_845751.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. Ames] gi|47528755|ref|YP_020104.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186221|ref|YP_029473.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. Sterne] gi|165869199|ref|ZP_02213859.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0488] gi|167632414|ref|ZP_02390741.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0442] gi|167637193|ref|ZP_02395473.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0193] gi|170684667|ref|ZP_02875892.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0465] gi|170705178|ref|ZP_02895643.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0389] gi|177650021|ref|ZP_02933022.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0174] gi|190564711|ref|ZP_03017632.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis Tsiankovskii-I] gi|227813754|ref|YP_002813763.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. CDC 684] gi|229603005|ref|YP_002867630.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0248] gi|254685987|ref|ZP_05149846.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. CNEVA-9066] gi|254723390|ref|ZP_05185178.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A1055] gi|254738459|ref|ZP_05196162.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Western North America USA6153] gi|254742376|ref|ZP_05200061.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Kruger B] gi|254752775|ref|ZP_05204811.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Vollum] gi|254761288|ref|ZP_05213312.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Australia 94] gi|30258008|gb|AAP27237.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Ames] gi|47503903|gb|AAT32579.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180148|gb|AAT55524.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. Sterne] gi|164715925|gb|EDR21442.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0488] gi|167514700|gb|EDR90066.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0193] gi|167532712|gb|EDR95348.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0442] gi|170130033|gb|EDS98895.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0389] gi|170670927|gb|EDT21665.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0465] gi|172083973|gb|EDT69032.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0174] gi|190564028|gb|EDV17992.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis Tsiankovskii-I] gi|227007870|gb|ACP17613.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. CDC 684] gi|229267413|gb|ACQ49050.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str. A0248] Length = 299 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133 +G + L R ++ S T ET GIL + N +G + M + A Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 S +++ VN L + P V S GN + V + + D+ + + + Sbjct: 133 GSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184 Query: 193 FS 194 F Sbjct: 185 FP 186 >gi|65320704|ref|ZP_00393663.1| COG0384: Predicted epimerase, PhzC/PhzF homolog [Bacillus anthracis str. A2012] Length = 299 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133 +G + L R ++ S T ET GIL + N +G + M + A Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 S +++ VN L + P V S GN + V + + D+ + + + Sbjct: 133 GSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184 Query: 193 FS 194 F Sbjct: 185 FP 186 >gi|228928462|ref|ZP_04091502.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831193|gb|EEM76790.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 299 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILD---WK 128 +G + L R ++ S T ET GIL EN + I + P Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKIRQTAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LA S D P+ + N V+ Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|226357446|ref|YP_002787185.1| proline racemase [Deinococcus deserti VCD115] gi|226319436|gb|ACO47431.1| putative proline racemase [Deinococcus deserti VCD115] Length = 326 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 95/299 (31%), Gaps = 47/299 (15%) Query: 19 LVIDMRGCHDNIT-SDAINALSTDDN----------THFDQIM--LIHDFQDASVDAFIR 65 +V+D T ++ ALS D + D ++ L+ + A + Sbjct: 27 IVLDGFPAIPGATLAEQRQALSRDFDAWRSLINNEPRGNDVLVSALLLPPRAPDCAAGVI 86 Query: 66 IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N G + CG+G +V L R++ +T G++ A + DG +SV Sbjct: 87 FFNNVG-PLNMCGHGTIGLVSTLAYLGRIEPGEHRIDTPVGVVSATLHEDGRVSVQNVPA 145 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYH 177 + + + R G V HA + V L Sbjct: 146 YRHSQGVTVVVPGIGEVRGDVAWGGNWFFLTDSGDQDLTVANVEALTDHA-WRVRQALEA 204 Query: 178 YDL-ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC---ASV 233 + + G + +F +S V R + CG+ A + Sbjct: 205 AGITGADGAEIDHIELFGHVDGVSRNFVLCPGKAYDR---------SPCGTGTSAKMACL 255 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-------VFMTGEAKKEWEGKLDIKTGK 285 A G L R V ++G E+ H +TG+A EG+L ++ G Sbjct: 256 AADGLLAPGQRWVQQSVIG----TEFEGQYHWHGGALCPTITGQAFITAEGELIVQPGD 310 >gi|254386020|ref|ZP_05001336.1| oxidoreductase [Streptomyces sp. Mg1] gi|194344881|gb|EDX25847.1| oxidoreductase [Streptomyces sp. Mg1] Length = 272 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 68/240 (28%), Gaps = 39/240 (16%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L + + F GIL A D Sbjct: 53 PPGGDADWALRWFTPT-AEVDMCGHATLATAHVLASAGLATGPVRFGARCGILTADAAED 111 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G+I++D S + +R+ S H V + Sbjct: 112 GAITLD------------FPTSALTQVEPAPEVSGALGAAIRSVHDTS---EHVGDLVVE 156 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-----GLTAACG-- 226 + L ++ + A RG G A G Sbjct: 157 LADERTVRELAPDLHALRGYARRGIIVTAPAEDRS--------RGYDFVSRGFFPAVGID 208 Query: 227 ----SAACASVVASGCLHKTNRAVSVKMLGG---GLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + +A + R V + GG GL+I + +TG A +G+L Sbjct: 209 EDPVTGSAHTALAPFWAARLGRTELVGLQGGIRQGLVIVRLRGDRTLLTGHAVTVIDGEL 268 >gi|260776098|ref|ZP_05884993.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607321|gb|EEX33586.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 232 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 46/240 (19%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSIS 117 D +R + EV+ CG+G V L + K S TF T+ G+L K + Sbjct: 20 DMRLRWFTPE-VEVKLCGHGTLAVAHVLKQQGKIATGDSITFNTLSGLLSVKVLS-STYE 77 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +D P L++ + + + V++ + + + N A+ + D Sbjct: 78 LDFPAPELEYNQHCSEERLNALGLSEQQV--VSYCQFDSKELFELTNEQAVHDLSPDFSS 135 Query: 178 YDLASFGNLL--------AKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + G + + F+ V ++ + + Sbjct: 136 L-IRQPGRGIIVTAQSTQSNSDIISRYFAPWVGVN------EDPV--------------- 173 Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +A K ++ V GG L IE ++ V ++G A +G L I Sbjct: 174 -TGSAHCALAEFWAGKIDKPVLTAYQASSRGGYLDIERVESGRVTLSGSAVIALKGTLFI 232 >gi|317486579|ref|ZP_07945400.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6] gi|316922179|gb|EFV43444.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6] Length = 291 Score = 45.9 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 88/299 (29%), Gaps = 45/299 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F K GN +++ + + + +Q + A+ Sbjct: 2 RVLPFTKYSPCGNTTILVRESSLSPADRARVAAEIIAPGHLEAEQAGYV---DTAAPVPR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISV-DMG 121 + ++ + C N R L G L + G +SV M Sbjct: 59 LDMM-----GGEFCVNATRAFAALLAEE------------GKLSPESGGLGGIVSVSGMP 101 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDL 180 E + A F+ P ++V + G H + D + L Sbjct: 102 ERLRVRVRRLAAHRFESSVLLDLPQAPPLENVAPGMYLVRVPGIAHLVL----DAAAHPL 157 Query: 181 -----ASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLR--TWERGVGLTAA---CGSAA 229 L A+ + E + L + W RG G T A CGS Sbjct: 158 PADKDRDTAALFARFGLLGEDA-AGCIWLHREPSGLRITPFVWVRGTGTTYAETACGSGT 216 Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIE-----WHDNNHVFMTGEAKKEWEGKLDIK 282 A+ + ++ +S+ GG L + + ++ G ++ G + ++ Sbjct: 217 LAASIVCQGVYGDGGELSLMQPGGEPLRVVPDGAAYPGGWAAWVGGPVRRIARGDVFVE 275 >gi|255523493|ref|ZP_05390461.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296186548|ref|ZP_06854951.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7] gi|255512750|gb|EET89022.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296048995|gb|EFG88426.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7] Length = 51 Score = 45.5 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++ + V +KMLGG LLI ++ MTGE ++ EG L Sbjct: 1 MNLVDEKVKIKMLGGELLIRIDAAWNIEMTGEVRQIAEGTLS 42 >gi|15596465|ref|NP_249959.1| hypothetical protein PA1268 [Pseudomonas aeruginosa PAO1] gi|81541513|sp|Q9I476|HYPRE_PSEAE RecName: Full=4-hydroxyproline epimerase; AltName: Full=Hydroxyproline-2-epimerase; Short=PaHyPRE gi|9947201|gb|AAG04657.1|AE004556_7 hypothetical protein PA1268 [Pseudomonas aeruginosa PAO1] Length = 314 Score = 45.5 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R+ ET G + A + DGS+SV + +P R ++ + IG Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 152 Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193 V+ N F + G N A V+ L D+ G + +F Sbjct: 153 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 212 Query: 194 SE 195 ++ Sbjct: 213 AD 214 >gi|85544193|pdb|2AZP|A Chain A, Crystal Structure Of Pa1268 Solved By Sulfur Sad Length = 318 Score = 45.5 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 45 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 103 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R+ ET G + A + DGS+SV + +P R ++ + IG Sbjct: 104 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 154 Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193 V+ N F + G N A V+ L D+ G + +F Sbjct: 155 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 214 Query: 194 SE 195 ++ Sbjct: 215 AD 216 >gi|116049220|ref|YP_791977.1| hypothetical protein PA14_47840 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584441|gb|ABJ10456.1| putative proline racemase [Pseudomonas aeruginosa UCBPP-PA14] Length = 314 Score = 45.5 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R+ ET G + A + DGS+SV + +P R ++ + IG Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 152 Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193 V+ N F + G N A V+ L D+ G + +F Sbjct: 153 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 212 Query: 194 SE 195 ++ Sbjct: 213 AD 214 >gi|228947040|ref|ZP_04109336.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812614|gb|EEM58939.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 299 Score = 45.5 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WK 128 +G + L R ++ S T ET GIL + N +G + M P Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LA S D P+ + N V+ Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGNTGNWTVI 166 >gi|217960828|ref|YP_002339392.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH187] gi|229140031|ref|ZP_04268594.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST26] gi|217066483|gb|ACJ80733.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH187] gi|228643437|gb|EEK99705.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST26] Length = 299 Score = 45.5 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETTFVLSSEVA--DIRMRYFTP-GFEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133 +G + L R ++ S T ET GIL + N +G + M + +K Sbjct: 75 HGTVGTIFALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKE---- 130 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + K + VN L + P V S GN + V + + D+ + + + Sbjct: 131 FTGSKEELAHSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184 Query: 193 FS 194 F Sbjct: 185 FP 186 >gi|28211908|ref|NP_782852.1| hypothetical protein CTC02312 [Clostridium tetani E88] gi|28204351|gb|AAO36789.1| conserved protein [Clostridium tetani E88] Length = 266 Score = 45.5 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 45/276 (16%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 + D L N H +Q+ + + + ++ G + CGN R + Sbjct: 13 PKELYKDISKKLMQYTNIHGEQVGFLTSSNEEEKIIKLNMM---G--GEFCGNASRSLGA 67 Query: 87 FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL---IPLARSFDKM 139 L +K K +E ++ + ++ + K+ IP +K+ Sbjct: 68 LLLYNNYPYIKNKEELYEVKLQCSGYEDVLNCEVTPTEVSNLFYSKIDMPIPSKIKLEKL 127 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV-- 197 + + + +F FVV I VE++ ++L + G+ Sbjct: 128 EDYEIYKVDFSGIF---HFVVD------INKVENNEKFFNLVKNTMEERYPEYDAFGIMF 178 Query: 198 -NLS------IARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 N + + V + +SL WE +C S A V A +K N + ++ Sbjct: 179 YNFNKNYLKPLVYVKATDSLF---WE------ESCASGTSAVVSALAYENKENICIGIRQ 229 Query: 251 LGGGLL-----IEWHDNNHVFMTGEAKKEWEGKLDI 281 GG L +E + + + G + EG +++ Sbjct: 230 PGGELEATANYVE-SKIDKITIKGTVEIVAEGIVNV 264 >gi|50290607|ref|XP_447736.1| hypothetical protein [Candida glabrata CBS 138] gi|49527047|emb|CAG60683.1| unnamed protein product [Candida glabrata] Length = 293 Score = 45.1 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 34/252 (13%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I+ Q+ D +RI SE+ G+ + + + +V +E Sbjct: 55 FIYKSQNPQADYKVRIFTP-VSELPFAGHPTVGTCKAYLDIVGKP-----ISGNYIVHQE 108 Query: 111 NRDGSISVDM--GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 G + +++ G + D++ + I V H + P ++ G + Sbjct: 109 CAAGLVPIEIKDGIVSFSAPRVAPTELSDEVIAEYTKI--VGHPYTHRPQMIDSGPQWVV 166 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-------ERGVGL 221 + VED Y++ L + ++ + IA S ++R + E V Sbjct: 167 YLVEDADTCYNINPNFQNLKLLNLDNDHSGVIIAGPRSDNEWEMRAFVPVLSVPEDPV-- 224 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK-MLGGGL--------LIEWHDNNHVFMTG--E 270 CGS A A + + +VK GG L I + V+ G Sbjct: 225 ---CGSGAAAFIGHLQQRFQYKETTNVKITQGGRLNRNGLIVGQINLDNEKPVYKIGGVP 281 Query: 271 AKKEWEGKLDIK 282 +G + ++ Sbjct: 282 VTVV-DGTITVR 292 >gi|310659838|ref|YP_003937559.1| phenazine biosynthesis protein phzf family [Clostridium sticklandii DSM 519] gi|308826616|emb|CBH22654.1| phenazine biosynthesis protein PhzF family [Clostridium sticklandii] Length = 290 Score = 45.1 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 29/153 (18%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D DN+T + ++ F + + A D +R EV CG Sbjct: 22 VVLDA----DNLTEKQMQGIAKK--VGFSETAFVMSSDSA--DFRVRFFTP-SDEVDLCG 72 Query: 79 NGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP----ILDWKLI 130 + + F L R+ + ET+ GIL + DGSI ++ P I++ I Sbjct: 73 HAT--IATFKLLLLKGRITTGVYKQETLAGILSVEALADGSILMEQSIPEYYEIIEPSEI 130 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 A+S + + PV VVS G Sbjct: 131 --AKSLGLLVSELSEDYPVQ--------VVSTG 153 >gi|47564540|ref|ZP_00235585.1| phenazine biosynthesis protein PhzF family, putative [Bacillus cereus G9241] gi|47558692|gb|EAL17015.1| phenazine biosynthesis protein PhzF family, putative [Bacillus cereus G9241] Length = 299 Score = 45.1 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 15/143 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ + + A D +R G E+ CG+G + Sbjct: 29 DGLTEEEMQRIAEK--VGFNETSFVLPSEVA--DIRMRYFTP-GFEMDLCGHGTVATIFA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAKEN--RDGSISVDMGEPILDWKL-----IPLARSFD 137 L R ++ + T ET GIL + +G + M + L +K LA S Sbjct: 84 LRERGLLEEKNNLTIETKAGILPIQIGVKENGEAFIKMRQAALQFKEFTGSTEELAHSIG 143 Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160 D P+ + N V+ Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166 >gi|312881130|ref|ZP_07740930.1| phenazine biosynthesis protein PhzF family [Aminomonas paucivorans DSM 12260] gi|310784421|gb|EFQ24819.1| phenazine biosynthesis protein PhzF family [Aminomonas paucivorans DSM 12260] Length = 299 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILV 107 + + + D +R +EV CG+ + + + T G L Sbjct: 50 FVLPPEGSDHDVRVRFFTP-RTEVPLCGHAT-VAAHYVRAVAGGTAPGRYRQLTGAGSLP 107 Query: 108 AKENRDGS-ISVDM--GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + RDG + M G P+ + PL + +G + VVS G Sbjct: 108 VEILRDGEDYRIRMTQGPPVFEP---PLGEDLAEAVWGALGLGREDRGDFAPVQVVSTG 163 >gi|296110220|ref|YP_003620601.1| phenazine biosynthesis protein PhzF family [Leuconostoc kimchii IMSNU 11154] gi|295831751|gb|ADG39632.1| phenazine biosynthesis protein PhzF family [Leuconostoc kimchii IMSNU 11154] Length = 283 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 8 FAKMEGIGNKI-LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+K GNK LV D ++TS A++ + + + I + + A D + Sbjct: 10 FSKDNAGGNKAGLVFD----RPDLTSAQKMAIAKE--LGYAETAFITESKLA--DFRLEY 61 Query: 67 INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 EV CG+ FL T+++ + +T ET GIL K + DG + ++ P Sbjct: 62 FTPT-EEVPLCGHATIATFAFLNLTNKLSKSDYTIETKSGILSMKVDTDGMVFMEQKVPT 120 Query: 125 LD 126 Sbjct: 121 YS 122 >gi|162409762|gb|ABS82393.2| hydroxyproline-2-epimerase [Pseudomonas aeruginosa] Length = 314 Score = 44.7 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131 >gi|107100719|ref|ZP_01364637.1| hypothetical protein PaerPA_01001746 [Pseudomonas aeruginosa PACS2] gi|254234391|ref|ZP_04927714.1| hypothetical protein PACG_00238 [Pseudomonas aeruginosa C3719] gi|254239642|ref|ZP_04932964.1| hypothetical protein PA2G_00262 [Pseudomonas aeruginosa 2192] gi|296390351|ref|ZP_06879826.1| 4-hydroxyproline epimerase [Pseudomonas aeruginosa PAb1] gi|126166322|gb|EAZ51833.1| hypothetical protein PACG_00238 [Pseudomonas aeruginosa C3719] gi|126193020|gb|EAZ57083.1| hypothetical protein PA2G_00262 [Pseudomonas aeruginosa 2192] Length = 314 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131 >gi|70728792|ref|YP_258541.1| epimerase [Pseudomonas fluorescens Pf-5] gi|68343091|gb|AAY90697.1| epimerase, putative [Pseudomonas fluorescens Pf-5] Length = 310 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R D + D ++ L+ Q A + N G CG+G Sbjct: 33 ERLQILEREHDQWRRACVLEPRGSDVLVGALLCQPQAGDACAGVIFFNNSGYLG-MCGHG 91 Query: 81 MRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +VR + R+ + ET G + A + D S+SV Sbjct: 92 TIGLVRSLYHLGRIDQGVHRIETPVGTVEATLHEDLSVSV 131 >gi|313106252|ref|ZP_07792499.1| putative proline racemase [Pseudomonas aeruginosa 39016] gi|310879001|gb|EFQ37595.1| putative proline racemase [Pseudomonas aeruginosa 39016] Length = 314 Score = 44.7 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131 >gi|229197540|ref|ZP_04324265.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1293] gi|228585911|gb|EEK44004.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1293] Length = 282 Score = 44.7 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 25/182 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + D +R G E+ CG Sbjct: 7 IVLDA----DGLTEEEMQRIAEK--VGFNETTFVLSSEVG--DIRMRYFTP-GFEMDLCG 57 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133 +G + L R ++ S T ET GIL + N +G + M + +K Sbjct: 58 HGTVGTIFALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKE---- 113 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + K + VN L + P V S GN + V + + D+ + + + Sbjct: 114 FTGSKEELAHSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 167 Query: 193 FS 194 F Sbjct: 168 FP 169 >gi|237729209|ref|ZP_04559690.1| proline racemase [Citrobacter sp. 30_2] gi|226908938|gb|EEH94856.1| proline racemase [Citrobacter sp. 30_2] Length = 313 Score = 44.7 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 9/153 (5%) Query: 13 GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCD 70 G GN + R + D + D ++ L+ + A + N Sbjct: 31 GAGN----MSERRERFSRDYDDWRKAIILEPRGNDVLVGALLCEPVSPQATAGVIFFNNC 86 Query: 71 GSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 G + CG+G ++ L R++ ET G + A + DGS+SV+ K Sbjct: 87 G-FLNMCGHGTIGLIASLAWLGRIQPGKHLIETPVGDVTATLHEDGSVSVENVPAYRWRK 145 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + + + D G L +PF VS Sbjct: 146 QVQVETIHGTVTGDIAWGGNWFFLVNDHPFAVS 178 >gi|294628230|ref|ZP_06706790.1| oxidoreductase [Streptomyces sp. e14] gi|292831563|gb|EFF89912.1| oxidoreductase [Streptomyces sp. e14] Length = 269 Score = 44.4 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 4/97 (4%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 A D +R +EV CG+ L + F T G+L+A D Sbjct: 52 PGSAEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGTHTGPVRFATRSGVLIATPADD 110 Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGP 148 GSI++D L +P +A + F GP Sbjct: 111 GSITLDFPTAPLTAVEVPDGVAEALGAEPLTAFDTGP 147 >gi|228934702|ref|ZP_04097535.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824954|gb|EEM70753.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 299 Score = 44.4 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A + +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVAHI--RMRYFTP-GYEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ S T ET GIL + N +G + M + Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIVINENGETFIKMRQAAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|293606925|ref|ZP_06689272.1| possible proline racemase [Achromobacter piechaudii ATCC 43553] gi|292814657|gb|EFF73791.1| possible proline racemase [Achromobacter piechaudii ATCC 43553] Length = 337 Score = 44.4 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 15/129 (11%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG+E C Sbjct: 34 ILEKRAFLEQNYDWLRQALMREPRGHKDMFGVFLTPPSSPEFDAGLIYI--DGTEYSHMC 91 Query: 78 GNGMRCVVR-------FLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126 G+G V F + FET G++V++ +G + + Sbjct: 92 GHGTIAVSMAMVANGLFARGKDGITKIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151 Query: 127 WKLIPLARS 135 + IP+ Sbjct: 152 AQDIPVELP 160 >gi|225619139|ref|YP_002720365.1| phenazine biosynthesis protein PhzF family [Brachyspira hyodysenteriae WA1] gi|225213958|gb|ACN82692.1| phenazine biosynthesis protein PhzF family [Brachyspira hyodysenteriae WA1] Length = 263 Score = 44.4 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 65/246 (26%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118 D +R G E+ CG+ L + + +K + +F+T GIL +N D Sbjct: 59 DYELRWFTP-GGEIDLCGHATLASALVLMNIIYKKLNNISFKTKSGILNVVKNNDLY--- 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +M P + K I + ++ P+ R+ V Sbjct: 115 EMDFPSYELKKIDVTDEM----KEAIGFKPLEAYMGRDLLCV------------------ 152 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESL--------------------DLRTWERG 218 L + ++ N+ I +V +L+ L L +E Sbjct: 153 -LENEKQVIE--------ANIDIEKVKNLQGLLLHITSKGSEYDCITRSLAPKLNVYEDP 203 Query: 219 VGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V CGS C V + + L K + GG L ++ N V ++G+A Sbjct: 204 V-----CGSGHCHVVPLWADKLGKKDIIAFQASKRGGVLYCSFN-GNRVKLSGKAVLYSS 257 Query: 277 GKLDIK 282 ++ I+ Sbjct: 258 AEIYIQ 263 >gi|253989628|ref|YP_003040984.1| hypothetical protein PAU_02148 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781078|emb|CAQ84240.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 316 Score = 44.0 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 25/204 (12%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ D N G CG+G ++ L R+K + ET G++ A Sbjct: 69 LLCPPAAPEADIGAIFFNNAGYLG-MCGHGTMGLIASLHHLGRLKPGKYKIETPVGLVEA 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + +SV P ++ D D + N FL + S+ H Sbjct: 128 VLHENREVSV-HNVPSYRYQQNITVNVPDVGDVNGDIAWGGNWFFLISQHGQSLTPRHIA 186 Query: 169 ------FFVEDDLYHYDL-ASFGNLLAKHPMF-SEG-VNL-SIARVTSLESLDLRTWERG 218 + V L + G + +F + N + T++R Sbjct: 187 ELTQYSWAVRQALEQTGITGENGECIDHIELFAPDNHANSRNFVLCPGK------TYDRS 240 Query: 219 VGLTAACGSAACASVVASGCLHKT 242 CG+ A + K Sbjct: 241 P-----CGTGTSAKLACLAADGKL 259 >gi|225572940|ref|ZP_03781695.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM 10507] gi|225039698|gb|EEG49944.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM 10507] Length = 173 Score = 44.0 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 17/161 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M + ++ +G G L++D + + + + + +++ + Sbjct: 30 MCDHRIKMSRYQGQGTDCLILDPNQNQELLAGKKVELIC-RRSLGIGGDSVLYGPILENG 88 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A ++I + + ++ + +L A E +DG V + Sbjct: 89 KARMKIFQPECASKEAGEGKIGAFANYLVD-------------ACYFAGEPQDG---VQV 132 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G + + + + + I V ++L F VS Sbjct: 133 GLLDVSLEDMEFQTDWRACGKRNREIQFVEDIYLDESFFVS 173 >gi|266619209|ref|ZP_06112144.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi DSM 13479] gi|288869260|gb|EFD01559.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi DSM 13479] Length = 317 Score = 44.0 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 29/193 (15%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKE 110 Q D + G EV CG+ + F+ ++K+ +T ET GIL Sbjct: 82 SQSELADYKLEYFTPTG-EVPLCGHAT--IAAFVVLNYFGQLKKCEYTIETKSGILSIAV 138 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G I + P ++ + LA D +D F+ VS G I Sbjct: 139 KDGGVIFMQQNTPEF-YETLELA---DVVDCLGFNADTAPGNLPVQI--VSTGLRDIIVP 192 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVN-LS---IARVTSLESLDLRTWER------GVG 220 VE+ L L + A S+ N + + V + + R G+ Sbjct: 193 VENPLV---LETMVPDFAAVSKLSQKWNCVGIHAFSLVEDGKLTAVC---RNFAPLYGID 246 Query: 221 LTAACGSAACASV 233 +A G++ CA Sbjct: 247 EESATGTSCCALA 259 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFM 267 G CG A A+ V + + +++ G L I D +FM Sbjct: 98 GEVPLCGHATIAAFVVLNYFGQLKKCEYTIETKSGILSIAVKDGGVIFM 146 >gi|229060976|ref|ZP_04198330.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH603] gi|228718345|gb|EEL69979.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH603] Length = 282 Score = 44.0 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +VI+ D +T + + ++ F++ + + A D +R G E+ CG Sbjct: 7 VVIEA----DGLTEEEMQRIAEK--VGFNETAFVLSSEVA--DIRMRYFTP-GFEMDLCG 57 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120 +G + L R ++ + T ET GIL + N +G + M Sbjct: 58 HGTVGTIYALRERGLLEEKANLTIETKAGILPIQIGANENGETFIKM 104 >gi|297198200|ref|ZP_06915597.1| phenazine biosynthesis protein [Streptomyces sviceus ATCC 29083] gi|197714653|gb|EDY58687.1| phenazine biosynthesis protein [Streptomyces sviceus ATCC 29083] Length = 270 Score = 44.0 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 70/244 (28%), Gaps = 47/244 (19%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L R F T G+LVA D Sbjct: 53 PAGGEADWALRWFTP-ATEVNMCGHATLATAHVLHGTGAHRGPVRFATRSGVLVAMPGED 111 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GSI++D L +P R + + + +V + + + + Sbjct: 112 GSITLDFPTAPLTPVALP-ERLAEALGAEPLTAFDTGPNI--GDLLVELADEKTVHALRP 168 Query: 174 DLYHYDLASFGNLL-----AKHPM---------FSEGVNLSIARVTSLESLDLRTWERGV 219 DL S ++ + F N+ + + Sbjct: 169 DLKALGACSERGIIATARAENPDLGHDFVSRCFFP---NVG----IDEDPV--------- 212 Query: 220 GLTAACGSAACASVVA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 + + + +A + L +T+ + G + +TG A Sbjct: 213 -------TGSAHTALAPYWAERLGRTDLTGLQTSPRSGRVRTGLR-GERTLLTGRAVTVI 264 Query: 276 EGKL 279 EG+L Sbjct: 265 EGEL 268 >gi|229092387|ref|ZP_04223552.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock3-42] gi|228690960|gb|EEL44730.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock3-42] Length = 299 Score = 44.0 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A + +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ S T ET GIL + N +G + M + Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETLIKMRQAAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|218892758|ref|YP_002441627.1| putative proline racemase [Pseudomonas aeruginosa LESB58] gi|218772986|emb|CAW28798.1| putative proline racemase [Pseudomonas aeruginosa LESB58] Length = 314 Score = 44.0 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA A + D ++ L+ D A + N G CG+G +V L Sbjct: 43 DAWRAACILEPRGSDVLVGALLCAPVDPESCAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131 >gi|311693926|gb|ADP96799.1| phenazine biosynthesis protein, PhzF family [marine bacterium HP15] Length = 267 Score = 44.0 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 45/247 (18%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA 108 + D IR G+EV CG+ + +++ R+ + G L Sbjct: 50 FVPLPAGEDADFHIRWFTP-GTEVPLCGHATLASAWIIFNKLGWDREQIRLRSKSGPLSV 108 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--FVVSMGNPH 166 +++ DG + +D P L ++ P + R+ P F+ N ++V + + Sbjct: 109 RQSDDGWLVLDF--PNLAYEKQPT----PALIREALESAPDTAFFVPNDTNYMVVLKDED 162 Query: 167 AIFFVEDDLYHY-DLASFGNLLAKHPMFSEGVNLSIARV-------TSLESLDLRTWERG 218 A+ + DL L + G ++ + G N + + Sbjct: 163 AVRSAQPDLRKLKQLGNQGLIIT-----APGNNCDFVSRYFAPGAGIDEDPV-------- 209 Query: 219 VGLTAACGSAACASVVA---SGCLHKTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + + SV+ S L KT + GG L E + V + G+A Sbjct: 210 --------TGSIHSVLVPYWSEQLGKTELEARQISARGGVLRCE-SKGDRVDIAGQAAFF 260 Query: 275 WEGKLDI 281 EG + + Sbjct: 261 MEGAIHL 267 >gi|89072326|ref|ZP_01158905.1| Predicted epimerase [Photobacterium sp. SKA34] gi|89051858|gb|EAR57310.1| Predicted epimerase [Photobacterium sp. SKA34] Length = 269 Score = 44.0 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 31/224 (13%) Query: 72 SEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 SEV+ CG+G V L + + TF T+ G L A + +I +D PILD Sbjct: 64 SEVKLCGHGTLSVAHILKEKKLFNVNDTVTFNTLSGALTA-LIKSLAIELDFPAPILDLN 122 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + P + + H+ + F+E D L N Sbjct: 123 ITPSTELLASLGIEATHVIAYGIFDSK-------------IFIEVDNEEIVLNLTPNFDR 169 Query: 189 KHPMFSEGV-NLSIARVTSLESLDLRTWER------GVGLTAACGSAACA-SVVASGCLH 240 + GV ++ + L+ + R GV GSA CA ++ S L+ Sbjct: 170 LKKIDGRGVLITALTQRDDLDFIS-----RFFAPWVGVNEDPVTGSAHCALTLYWSEKLN 224 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 K + GG + E N + + G A G + + + Sbjct: 225 KVKLNGYQASVRGGYVSTELLPNKRIKLIGSAITTMRGTMQLPS 268 >gi|302543839|ref|ZP_07296181.1| PhzF family phenazine biosynthesis protein [Streptomyces hygroscopicus ATCC 53653] gi|302461457|gb|EFL24550.1| PhzF family phenazine biosynthesis protein [Streptomyces himastatinicus ATCC 53653] Length = 287 Score = 44.0 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 19/199 (9%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D + A+ AL+ + + + + +R + +EV CG Sbjct: 25 VVLDA----GTLDDAAMTALAAR--VGYSETAFLTAHDETRRRYRMRFFSP-RAEVAFCG 77 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138 + L R F+T G + + DG G P +P Sbjct: 78 HATVATAVALAERDGPGELVFDTAAGEVRVTTSTDG------GVPSATLTSVPSRTRPAD 131 Query: 139 MDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 D + P + P V GN H + DLA + L + Sbjct: 132 EDTELAPALAALRWSPDDLDPALPPHVAFAGNDHLVLAAATRARLADLAYDFDALEELMR 191 Query: 193 FSEGVNLSIARVTSLESLD 211 + + + LD Sbjct: 192 RHGWTTVHLVHRPDPDRLD 210 >gi|152983543|ref|YP_001349476.1| hypothetical protein PSPA7_4122 [Pseudomonas aeruginosa PA7] gi|150958701|gb|ABR80726.1| hypothetical protein PSPA7_4122 [Pseudomonas aeruginosa PA7] Length = 314 Score = 43.6 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 33/184 (17%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 DA + D ++ L+ + D A + N G CG+G +V L Sbjct: 43 DAWRTACILEPRGSDVLVGALLCEPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R+ + ET G + A + DGS+SV + +P R + IG Sbjct: 102 LGRIGPGAHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRAVAVQVPGIGR 152 Query: 149 VNHLFLR--NPFVVSMGNPHA--------------IFFVEDDLYHYDLA-SFGNLLAKHP 191 V N F + G HA V+ L D+ G + Sbjct: 153 VVGDIAWGGNWFFLVAG--HAQRIAGDNLDALTAYAVAVQQALEDQDIRGEDGGAIDHIE 210 Query: 192 MFSE 195 +F++ Sbjct: 211 LFAD 214 >gi|330810048|ref|YP_004354510.1| proline racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378156|gb|AEA69506.1| putative proline racemase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 310 Score = 43.6 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 5/100 (5%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R DA + D ++ L+ + D S A + N G CG+G Sbjct: 33 ERKQRLATEHDAWRTACVLEPRGSDVLVGALLCEPVDPSACAGVIFFNNSGYLG-MCGHG 91 Query: 81 MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118 +V L R+ + ET G + A + D S+SV Sbjct: 92 TIGLVASLAHLGRIGPGVHSIETPVGTVQATLHEDRSVSV 131 >gi|229134240|ref|ZP_04263056.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST196] gi|228649260|gb|EEL05279.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST196] Length = 299 Score = 43.6 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 10/98 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ I + A D +R G E+ CG+G + Sbjct: 29 DGLTEEDMQRIAEK--VGFNETSFILSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120 L R ++ + T ET GIL + N +G + M Sbjct: 84 LRERGLLEEKTNLTIETKAGILPIQIGANENGETFIKM 121 >gi|293604125|ref|ZP_06686533.1| 4-hydroxyproline epimerase [Achromobacter piechaudii ATCC 43553] gi|292817350|gb|EFF76423.1| 4-hydroxyproline epimerase [Achromobacter piechaudii ATCC 43553] Length = 310 Score = 43.6 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 43/232 (18%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT 89 DA A + + D ++ L+ Q+ + A + N G CG+G + V Sbjct: 43 DAWRAATVLEPRGSDVLVGALLCAPQNPTNAAGVIFFNNAGYLG-MCGHGTIGLVATLAY 101 Query: 90 SRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R + ET G + A + DGS+SV + +P R + D G Sbjct: 102 LRRLKPGVHGIETPVGTIRATLHEDGSVSV---------RNVPAYRLHQAVCVDVPEYGE 152 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF---------------GNLLAKHPMF 193 V + HA D+L ++ G + +F Sbjct: 153 VVGDVAWGGNWFFLVGQHAQRVAPDNLDALTHYAWAIRQALQASGVSGHDGAEIDHIELF 212 Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + N + ++R CG+ A + K Sbjct: 213 APDPNADSRNFVLCPGKA------YDRSP-----CGTGTSAKLACLAADGKL 253 >gi|228916030|ref|ZP_04079603.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843625|gb|EEM88701.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 299 Score = 43.6 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A + +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ S T ET GIL + N +G + M + Sbjct: 75 HGTVGTIYALRERSLLEEKASLTIETKAGILPIQIGVNENGETLIKMRQAAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|228998160|ref|ZP_04157758.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock3-17] gi|228761552|gb|EEM10500.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock3-17] Length = 299 Score = 43.6 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 LVID G +T+D + ++ F++ + A D IR G E+ CG Sbjct: 24 LVIDAEG----LTNDEMQLIAKK--VGFNETSFVLPSNVA--DIRIRYFTP-GHEMNLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS----ISVDMGEPI---LDWK 128 + + L R +++ T ET +L + D + I + P D Sbjct: 75 HATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDIDENGESFIKMRQTAPQFQKFDGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 + LA S D P+ + ++ Sbjct: 135 IEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 166 >gi|118478683|ref|YP_895834.1| PhzF family phenazine biosynthesis protein [Bacillus thuringiensis str. Al Hakam] gi|196042605|ref|ZP_03109844.1| phenazine biosynthesis protein PhzF family [Bacillus cereus 03BB108] gi|225865380|ref|YP_002750758.1| phenazine biosynthesis protein PhzF family [Bacillus cereus 03BB102] gi|118417908|gb|ABK86327.1| phenazine biosynthesis protein, PhzF family [Bacillus thuringiensis str. Al Hakam] gi|196026089|gb|EDX64757.1| phenazine biosynthesis protein PhzF family [Bacillus cereus 03BB108] gi|225786311|gb|ACO26528.1| phenazine biosynthesis protein PhzF family [Bacillus cereus 03BB102] Length = 299 Score = 43.6 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A + +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ + T ET GIL + N +G + M + Sbjct: 75 HGTVGTIFALRERGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKDFAGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|311281085|ref|YP_003943316.1| 4-hydroxyproline epimerase [Enterobacter cloacae SCF1] gi|308750280|gb|ADO50032.1| 4-hydroxyproline epimerase [Enterobacter cloacae SCF1] Length = 315 Score = 43.6 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 6/111 (5%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R D + D ++ L+ D A A + N G + CG+G Sbjct: 39 ERRERFARDYDRWRKAVILEPRGSDVLVGALLCDPVSADATAGVIFFNNSG-FLNMCGHG 97 Query: 81 MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 ++ L R+K ET G + A + DGS+ V+ P W+ Sbjct: 98 TIGLIASLAWLGRIKPGKHKIETPVGDVTATLHDDGSVCVE-NVPSYRWRQ 147 >gi|283786214|ref|YP_003366079.1| hydroxyproline-2-epimerase [Citrobacter rodentium ICC168] gi|282949668|emb|CBG89287.1| putative hydroxyproline-2-epimerase [Citrobacter rodentium ICC168] Length = 313 Score = 43.6 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 5/142 (3%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R + D + D ++ L+ + A + N G + CG+G Sbjct: 37 GRRERFSREYDDWRKAIILEPRGNDVLVGALLCEPVSPQATAGVIFFNNSG-FLNMCGHG 95 Query: 81 MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138 +V L R++ ET G + A + DGS+SV+ K + + + Sbjct: 96 TIGLVASLAWLGRIQPGKHLIETPVGDVTATLHEDGSVSVENVPAYRWRKQVQVETACGT 155 Query: 139 MDRDRFHIGPVNHLFLRNPFVV 160 + D G L +PF V Sbjct: 156 VTGDIAWGGNWFFLVNDHPFAV 177 >gi|229185637|ref|ZP_04312816.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BGSC 6E1] gi|228597867|gb|EEK55508.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BGSC 6E1] Length = 282 Score = 43.6 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ F++ + + A + +R G E+ CG Sbjct: 7 IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 57 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128 +G + L R ++ + T ET GIL + N +G + M + Sbjct: 58 HGTVGTIFALRERGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKDFAGS 117 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LARS D P+ + N V+ Sbjct: 118 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 149 >gi|15614513|ref|NP_242816.1| hypothetical protein BH1950 [Bacillus halodurans C-125] gi|18203174|sp|Q9KBH7|Y1950_BACHD RecName: Full=Uncharacterized isomerase BH1950 gi|10174568|dbj|BAB05669.1| BH1950 [Bacillus halodurans C-125] Length = 295 Score = 43.2 bits (101), Expect = 0.043, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 22/162 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 +K G +V+D +G +T ++ + F++ D IR Sbjct: 17 SKGNPAG---IVLDGKG----LTDSDRQKIAKE--VGFNETAF--PLPSERADVNIRFFT 65 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123 G E+ CG+ + L ++ R T ET GI + + D S+ + M + Sbjct: 66 P-GHEINLCGHATMATIYALKTKGLLPDRDEITIETKAGILPIRLSIDVDRSMMITMKQA 124 Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 LA S ++D PV + ++ Sbjct: 125 APQLRAFSGSRSELAASLALEEKDLHEELPVVYGSTGTWTLL 166 >gi|254253858|ref|ZP_04947175.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158] gi|124898503|gb|EAY70346.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158] Length = 746 Score = 43.2 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A A + N G CG+G VVR L Sbjct: 92 DRYRTACILEPRGSDVLVGALLCEPVSADAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 151 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 180 >gi|228992108|ref|ZP_04152044.1| Phenazine biosynthesis protein PhzF [Bacillus pseudomycoides DSM 12442] gi|228767837|gb|EEM16464.1| Phenazine biosynthesis protein PhzF [Bacillus pseudomycoides DSM 12442] Length = 299 Score = 43.2 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 LVID G +T+D + ++ F++ + A D IR G E+ CG Sbjct: 24 LVIDAEG----LTNDEMQLIAKK--VGFNESSFVLPSNVA--DIRIRYFTP-GHEMNLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS----ISVDMGEPI---LDWK 128 + + L R +++ T ET +L + D + I + P D Sbjct: 75 HATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDIDENGESFIKMRQTAPQFQKFDGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 + LA S D P+ + ++ Sbjct: 135 IEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 166 >gi|52142118|ref|YP_084710.1| PhzF family phenazine biosynthesis protein [Bacillus cereus E33L] gi|51975587|gb|AAU17137.1| possible phenazine biosynthesis protein, PhzF family [Bacillus cereus E33L] Length = 299 Score = 43.2 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 25/182 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + + ++ +++ + + D +R G E+ CG Sbjct: 24 IVLDA----DGLTEEEMQIIAEK--VGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133 +G + L + ++ + T ET GIL + N +G + M + A Sbjct: 75 HGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 S +++ R VN L + P V S GN + V + + D+ + + + Sbjct: 133 GSKEEL--ARSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184 Query: 193 FS 194 F Sbjct: 185 FP 186 >gi|330718191|ref|ZP_08312791.1| phenazine biosynthesis protein PhzF family [Leuconostoc fallax KCTC 3537] Length = 283 Score = 43.2 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113 + D + EV CG+ FL T+++ + +T ET GIL K + D Sbjct: 51 ESKLADFRLEYFTPT-EEVPLCGHATIATFAFLNLTNKLSKSDYTIETKSGILSMKIDTD 109 Query: 114 GSISVDMGEPILD 126 G + ++ P Sbjct: 110 GIVFMEQNVPTYS 122 >gi|256789027|ref|ZP_05527458.1| oxidoreductase [Streptomyces lividans TK24] gi|289772920|ref|ZP_06532298.1| oxidoreductase [Streptomyces lividans TK24] gi|289703119|gb|EFD70548.1| oxidoreductase [Streptomyces lividans TK24] Length = 269 Score = 43.2 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 69/241 (28%), Gaps = 41/241 (17%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 D +R +EV CG+ L + + F T G+LVA D Sbjct: 52 PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPRED 110 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GS ++D L P + L V+ G P+ + + Sbjct: 111 GSFTLDFPTAPLTPVEAPPGIAA--------------ALGAEPRTVLDTG-PNIGDLLVE 155 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226 + L SE ++ AR RG + C G Sbjct: 156 VADEETVRGLSPDLGALAAHSERGIIATARAEDPA--------RGYDYVSRCFFPNVGID 207 Query: 227 ----SAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + + + +A + R V + G + E ++G A +G+ Sbjct: 208 EDPVTGSAHTALAPFWSERLGRPDLVGLQASSRSGRVRTELR-GGRTLLSGHAVTVIDGE 266 Query: 279 L 279 L Sbjct: 267 L 267 >gi|160938867|ref|ZP_02086218.1| hypothetical protein CLOBOL_03761 [Clostridium bolteae ATCC BAA-613] gi|158437830|gb|EDP15590.1| hypothetical protein CLOBOL_03761 [Clostridium bolteae ATCC BAA-613] Length = 285 Score = 42.8 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Query: 56 QDASVDAFIRIINCDGSEVQSCGN---GMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 D + G EV CG+ G V+R L R++++ +T ET GIL + ++ Sbjct: 52 DSELADFKLEYFTSVG-EVPLCGHATIGTFTVLRHL-GRLEKQEYTIETKSGILRIRVDK 109 Query: 113 DGSISVDMGEPIL 125 G I ++ P Sbjct: 110 SGLIFMEQNIPEF 122 >gi|297160745|gb|ADI10457.1| hypothetical protein SBI_07337 [Streptomyces bingchenggensis BCW-1] Length = 282 Score = 42.8 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 78/286 (27%), Gaps = 59/286 (20%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D D + + T + D +RI G E+ G Sbjct: 27 VVFDAADLDDQAMQRLARWTNLSETT------FVLPPSTPDADYRLRIFTP-GGELPFAG 79 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD- 137 + + RG + +E G + V GE IL + P R+ + Sbjct: 80 HPTLGSAHAWLEQGGSP------RRGDRIVQECAAGLVEVRRGEGILSFAAPPTRRTGEL 133 Query: 138 ----------KMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVEDDLYHYDLASFGNL 186 DR + + + V + + +E DL A G + Sbjct: 134 EQEYLEQVVTAFGIDRDQVLAHQWVDNGPGWAVVRLATAEEVLSLEPDLSRIPTAMVGAI 193 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWE-R-GVGLTAACG------------SAACAS 232 + G + +LRT+ R GV CG + A + Sbjct: 194 ----GAYPPGA---------EHAFELRTFAPRVGVAEDPVCGSMNASVGQWLTSTGAAPA 240 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + RA G + I + V++ G G Sbjct: 241 GYKVSQGARLGRA-------GEITITADPDGTVWVGGATTTCLRGT 279 >gi|229168140|ref|ZP_04295868.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH621] gi|228615384|gb|EEK72481.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH621] Length = 282 Score = 42.8 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ + + A D +R G E+ CG+G + Sbjct: 12 DGLTEEDMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 66 Query: 88 LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120 L R ++ + T ET GIL + N +G + M Sbjct: 67 LRERGLLEEKTNLTIETKAGILPIQIGANENGETFIKM 104 >gi|239818178|ref|YP_002947088.1| 4-hydroxyproline epimerase [Variovorax paradoxus S110] gi|239804755|gb|ACS21822.1| 4-hydroxyproline epimerase [Variovorax paradoxus S110] Length = 312 Score = 42.8 bits (100), Expect = 0.061, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + + D ++ L+ + A + N G CG+G +V L Sbjct: 43 DQWRAATVLEPRGSDVVVGALLCEPVSKDAAAGVVFFNNTGYLG-MCGHGTIGLVASLAH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + DGS+SV Sbjct: 102 MGRIGTGEHRIETPVGTVTATLHADGSVSV 131 >gi|193077841|gb|ABO12717.2| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978] Length = 289 Score = 42.8 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 57/293 (19%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +++D +TS+ + A++ N + + D+ D +RI SE+ G Sbjct: 24 VIMDA----STLTSEQMQAIANWTN--LSETTFVLPAIDSQADYQVRIFTPQ-SELPFAG 76 Query: 79 NGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 + L + K + G++ N IS ++ +P + Sbjct: 77 HPTIGTAYALLEAGLIKAKEGRLVQQCAAGLVTLTVNDSNHISFELPKPKITP------- 129 Query: 135 SFDKMDRDRF-HIGPVNHLFLRNPFVVSMG---------NPHAIFFVEDDLYHY-----D 179 D + ++ I N +V +G N A+ + DL D Sbjct: 130 -LDALQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQFSLD 188 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWE--RGVGLTAACGSA--ACASVV 234 + G+ + ++ +++R++ GV CGS + AS + Sbjct: 189 MKVTGSTIY-----------GFYEESNEHKRIEVRSFAPAYGVNEDPVCGSGNGSVASFI 237 Query: 235 ASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V + G G L +E H + + ++G A +G + + Sbjct: 238 RYHGILPAQNDVVLSSQGQALGREGQLQLELHQDK-ILVSGAAVTCIDGTIKL 289 >gi|126642335|ref|YP_001085319.1| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978] Length = 264 Score = 42.8 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 51/261 (19%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGIL 106 + D+ D +RI SE+ G+ L + K + G++ Sbjct: 25 FVLPAIDSQADYQVRIFTPQ-SELPFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLV 83 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMG-- 163 N IS ++ +P + D + ++ I N +V +G Sbjct: 84 TLTVNDSNHISFELPKPKITP--------LDALQTEKLAEILKCKINTQWNAALVDVGAR 135 Query: 164 -------NPHAIFFVEDDLYHY-----DLASFGNLLAKHPMFSEGVNLSIARVTSLE-SL 210 N A+ + DL D+ G+ + ++ + Sbjct: 136 WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIY-----------GFYEESNEHKRI 184 Query: 211 DLRTWE--RGVGLTAACGSA--ACASVVASGCLHKTNRAVSVKMLG------GGLLIEWH 260 ++R++ GV CGS + AS + + V + G G L +E H Sbjct: 185 EVRSFAPAYGVNEDPVCGSGNGSVASFIRYHGILPAQNDVVLSSQGQALGREGQLQLELH 244 Query: 261 DNNHVFMTGEAKKEWEGKLDI 281 + + ++G A +G + + Sbjct: 245 QDK-ILVSGAAVTCIDGTIKL 264 >gi|299143318|ref|ZP_07036398.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517803|gb|EFI41542.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 287 Score = 42.4 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 51/251 (20%) Query: 33 DAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-R 91 A+ ++ +Q+ I D + ++ G + CGN R + + Sbjct: 31 AYAKAIMEQIDSDVEQVAFISPSYDGPP-LRMDMM---G--GEFCGNATRTYGLYAATFL 84 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 ++ E + V+ N+ ++ ++ E +P A+ + I N+ Sbjct: 85 EEKGDVEVE----VYVSGVNKPLNVLANV-EKSYASVEVPPAKKISQ-----IEIDGRNY 134 Query: 152 LFLRNPFVVSMGNPHAIF--------FVEDDLY----HYDLASFGNLLAKHPMFSEGVNL 199 + + G H I FVE + +D +++G L F + Sbjct: 135 MVVEFD-----GITHTIIDDKSEDKEFVERAIDIVRKEFDSSAYGILFLNEKNFEL---I 186 Query: 200 SIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLI 257 V +++ R G +CGS + A+ + V +K G + + Sbjct: 187 PYVYVVGSDTIF-----REG-----SCGSGSIAAGYYLNKNSQDENFKVDIKQPKGSIEV 236 Query: 258 --EWHDNNHVF 266 ++ + Sbjct: 237 KARKSEDGQLL 247 >gi|308453257|ref|XP_003089365.1| hypothetical protein CRE_22218 [Caenorhabditis remanei] gi|308240571|gb|EFO84523.1| hypothetical protein CRE_22218 [Caenorhabditis remanei] Length = 321 Score = 42.4 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRD 113 A +R SEV CG+ L + + K FET+ GIL + + Sbjct: 60 YKACSQFSLRWFTPT-SEVPLCGHATLATSHILFNEIGNSNKELKFETLAGILAVRRDES 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKM 139 G++ +++ P D I + + + Sbjct: 119 GNVELNL--PEYDLTSIKFHHTTNPL 142 >gi|297162158|gb|ADI11870.1| putative oxidoreductase [Streptomyces bingchenggensis BCW-1] Length = 275 Score = 42.4 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 51/290 (17%) Query: 20 VIDM-RGCHDNITSDAINALSTDDNTHFDQI------------MLIHD-FQDASVDAFIR 65 ++D + L TD D++ H + A D +R Sbjct: 5 IVDAFTDRPFAGNPAGVLLLDTDTFPDADRLQRIAAEVNLSETAFAHPLPEGAEADWALR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 +EV+ CG+ L + + F T+ G+L + G+I++D Sbjct: 65 WFTP-ATEVKMCGHATLATAHVLRTTGAATGTVRFATLSGVLSTTADDSGTITLDFPASQ 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L + + D I V+H + V + + + + DL LA Sbjct: 124 LTPLDVAQGAAGAAADALGVRILSVHHTTPYIDHLFVEVADETTVRTLSPDLAA--LAQT 181 Query: 184 G-------NLLAKHPM---FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 G F V A ++ + + + + Sbjct: 182 GHRGCIVTAAAEDPARGYDFVSRV---FAPAVGIDEDPV--------------TGSAHTA 224 Query: 234 VA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +A S L +T GG + + +TG A +G+L Sbjct: 225 LAPFWSARLGRTELTGFQASARGGLVRTALR-GDRTLLTGTAVTVIDGEL 273 >gi|290512712|ref|ZP_06552078.1| proline racemase [Klebsiella sp. 1_1_55] gi|289775053|gb|EFD83055.1| proline racemase [Klebsiella sp. 1_1_55] Length = 315 Score = 42.4 bits (99), Expect = 0.070, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 28/224 (12%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + + D ++ L+ A A + N G + CG+G ++ L Sbjct: 49 DHWRQAAILEPRGNDVLVGALLCKPVSAEATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R++ ET G + A + DGS+SV K I + + + D Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165 Query: 149 VNHLFLRNPFVVSMGNPH------AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNL-- 199 N FL N ++ H + V + L + G ++ +F++ Sbjct: 166 GNWFFLINDHPFAITPEHIPQLTAYAWAVREGLEAAGIRGDDGGVIDHIELFADDDTADS 225 Query: 200 -SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + W+R CG+ A + K Sbjct: 226 RNFVLCPGKA------WDRSP-----CGTGTSAKLACLAQDGKL 258 >gi|308488720|ref|XP_003106554.1| hypothetical protein CRE_15959 [Caenorhabditis remanei] gi|308253904|gb|EFO97856.1| hypothetical protein CRE_15959 [Caenorhabditis remanei] Length = 318 Score = 42.4 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 12/110 (10%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +R +EV CG+ L + + FET G+L K+ +G ++ Sbjct: 69 FSLRWFTPT-TEVPLCGHATLATAHVLFNEIGNSNDELKFETKSGVLTVKKGAEGL--LE 125 Query: 120 MGEPILDWKLI-------PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 M P D I PLA F ++D F + L + S+ Sbjct: 126 MDFPKYDLNSIRFNELINPLADKFSEIDAPPFLFEVIKCLIPNKIVIESV 175 >gi|161520992|ref|YP_001584419.1| hydroxyproline-2-epimerase [Burkholderia multivorans ATCC 17616] gi|160345042|gb|ABX18127.1| proline racemase [Burkholderia multivorans ATCC 17616] Length = 310 Score = 42.4 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 131 >gi|189352828|ref|YP_001948455.1| hydroxyproline-2-epimerase [Burkholderia multivorans ATCC 17616] gi|189336850|dbj|BAG45919.1| proline racemase [Burkholderia multivorans ATCC 17616] Length = 311 Score = 42.4 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|221196682|ref|ZP_03569729.1| proline racemase family protein [Burkholderia multivorans CGD2M] gi|221203351|ref|ZP_03576370.1| proline racemase family protein [Burkholderia multivorans CGD2] gi|221177285|gb|EEE09713.1| proline racemase family protein [Burkholderia multivorans CGD2] gi|221183236|gb|EEE15636.1| proline racemase family protein [Burkholderia multivorans CGD2M] Length = 311 Score = 42.4 bits (99), Expect = 0.083, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|78062744|ref|YP_372652.1| proline racemase [Burkholderia sp. 383] gi|77970629|gb|ABB12008.1| Proline racemase [Burkholderia sp. 383] Length = 359 Score = 42.4 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 92 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 151 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 180 >gi|291301784|ref|YP_003513062.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] gi|290571004|gb|ADD43969.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] Length = 280 Score = 42.4 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 45/279 (16%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D G D + N + + T + D D +RI G E++ G Sbjct: 25 VVLDGDGVEDEVMRRIANWTNLSETT------FVLSPNDPEADYRLRIFTP-GLELEFAG 77 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP------- 131 + + G +V +E G + + GE L + P Sbjct: 78 HPTLGSAHAWLENGGKPK-----RAGRIV-QECAAGLVELRQGEGGLSFAAPPRRRVGEL 131 Query: 132 ----LARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNL 186 LA D +R + + + V +G+ + +E D + A G + Sbjct: 132 EAEHLAAIVDAFGIEREAVVSHQWVDNGPGWAVIRLGSAEEVLALEPDFSRFPTAMVGAV 191 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWE--RGVGLTAACGSAACASVVASGCLHKTNR 244 + +G A +LRT+ GV CGS + + Sbjct: 192 GE----YPKGS--EFAY-------ELRTFAPASGVFEDPVCGSMNASVAQWLTGAGEMPA 238 Query: 245 AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A V G + I ++ V++ G + G Sbjct: 239 AYKVSQGARLGRRGEVAIAVEEDGTVWVGGATTTCFRGT 277 >gi|288937307|ref|YP_003441366.1| 4-hydroxyproline epimerase [Klebsiella variicola At-22] gi|288892016|gb|ADC60334.1| 4-hydroxyproline epimerase [Klebsiella variicola At-22] Length = 315 Score = 42.4 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 28/224 (12%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + + D ++ L+ A+ A + N G + CG+G ++ L Sbjct: 49 DHWRQAAILEPRGNDVLVGALLCKPVSAAATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R++ ET G + A + DGS+SV K I + + + D Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165 Query: 149 VNHLFLRNPFVVSMGNPH------AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNL-- 199 N FL N ++ H + V + L + G ++ +F++ Sbjct: 166 GNWFFLINDHPFAITPEHIPQLTAYAWAVREGLEAAGIRGDDGGVIDHIELFADDDTADS 225 Query: 200 -SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + W+R CG+ A + K Sbjct: 226 RNFVLCPGKA------WDRSP-----CGTGTSAKLACLAQDGKL 258 >gi|257463928|ref|ZP_05628313.1| hypothetical protein FuD12_08764 [Fusobacterium sp. D12] Length = 255 Score = 42.0 bits (98), Expect = 0.089, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 40/220 (18%) Query: 74 VQSCGNGMRCVVRFLT----SRMKRKSFTFETIRG--------ILVAKENRDGSISVDMG 121 + CGN R +L K K++ T G + ++ + M Sbjct: 58 GEFCGNASRSFAAYLAFQDEDFQKEKNYEI-TCSGYSKTLSVWVRQGEKEHQFLAKIAMP 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E IL K + + R + + H L + + I ++ + + Sbjct: 117 E-ILSMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEI-----INVFQEYMEKEEYE 170 Query: 182 SFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +FG + K+ M +V + WE +C A Sbjct: 171 AFGLMFFEKEKYRMTP------YVQVKGISG----VWE------KSCAFGTTALGYYLRE 214 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ R +++ GG L + + VF+ G K EG+ Sbjct: 215 KYQMQR-ANIQQPGGYLEVS-LEGEQVFIDGLVKIVAEGE 252 >gi|309389128|gb|ADO77008.1| phenazine biosynthesis protein PhzF family [Halanaerobium praevalens DSM 2228] Length = 283 Score = 42.0 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 38/229 (16%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ D++T + + ++ + + I + + A D +R +EV CG Sbjct: 23 VVLNA----DSLTKNEMLVIAKK--VGYSETAFIMNSKQA--DFKLRFFTPT-AEVDLCG 73 Query: 79 NGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 + L + + ET GIL K + SV M + ++ Sbjct: 74 HATIAAFNLLRDLGIISTGEYLQETKAGILKIKVKAE---SVYMEQNKAEY----FEVIN 126 Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196 + F N+L +VS G I F++D +L + K Sbjct: 127 KAEIKACFKSETENYLGEMPIQIVSTGLKDIIVFIKDLETLLNLEPRQKKIKK------- 179 Query: 197 VNLSIARVTSLESLDLRT---WE--------R-GVGLTAACGSAACASV 233 V + + L T +E R G+ AA G++ CA Sbjct: 180 -ISEKYDVVGIHAFSLETINDFEAHARNFAPRYGIDEEAATGTSNCALA 227 >gi|317061454|ref|ZP_07925939.1| diaminopimelate epimerase [Fusobacterium sp. D12] gi|313687130|gb|EFS23965.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 269 Score = 42.0 bits (98), Expect = 0.095, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 40/220 (18%) Query: 74 VQSCGNGMRCVVRFLT----SRMKRKSFTFETIRG--------ILVAKENRDGSISVDMG 121 + CGN R +L K K++ T G + ++ + M Sbjct: 72 GEFCGNASRSFAAYLAFQDEDFQKEKNYEI-TCSGYSKTLSVWVRQGEKEHQFLAKIAMP 130 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 E IL K + + R + + H L + + I ++ + + Sbjct: 131 E-ILSMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEI-----INVFQEYMEKEEYE 184 Query: 182 SFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +FG + K+ M +V + WE +C A Sbjct: 185 AFGLMFFEKEKYRMTP------YVQVKGISG----VWE------KSCAFGTTALGYYLRE 228 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ R +++ GG L + + VF+ G K EG+ Sbjct: 229 KYQMQR-ANIQQPGGYLEVS-LEGEQVFIDGLVKIVAEGE 266 >gi|197100731|ref|NP_001124957.1| phenazine biosynthesis-like domain-containing protein [Pongo abelii] gi|75042410|sp|Q5RDZ1|PBLD_PONAB RecName: Full=Phenazine biosynthesis-like domain-containing protein gi|55726496|emb|CAH90016.1| hypothetical protein [Pongo abelii] Length = 288 Score = 42.0 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 80/261 (30%), Gaps = 78/261 (29%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + TF T+ G L A+ DG I Sbjct: 65 FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARRAEDGII--- 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +D + P + + + ++GN V+D Y D Sbjct: 121 -------------------LDFPLYPAHPQDFHEVEDLIKTAIGN----TLVQDICYSPD 157 Query: 180 LASFGNLLAKHPMFSE------GVNL-SIARVTSLESLDLRTWERGVGLTAACG------ 226 L+ ++ VN ++ +V + + G+ LT G Sbjct: 158 TRKL--LIRLSDVYDRSFLENLKVNTENLLQVENTGKVK------GLILTLK-GEPGGQT 208 Query: 227 ---------------------SAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWH 260 + + +V++S + + GG L I Sbjct: 209 QAFDFYSRYFAPWVAVAEDPVTGSAHAVLSSYWSQHLGKK-EMHAFQCSRRGGELGISLR 267 Query: 261 DNNHVFMTGEAKKEWEGKLDI 281 + V +TG A EG L + Sbjct: 268 PDGRVDITGSAAVVLEGTLTV 288 >gi|21219876|ref|NP_625655.1| oxidoreductase [Streptomyces coelicolor A3(2)] gi|13122116|emb|CAC32295.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] Length = 269 Score = 42.0 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 41/241 (17%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 D +R +EV CG+ L + + F T G+LVA D Sbjct: 52 PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPRED 110 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GS ++D L P + L V+ G P+ + + Sbjct: 111 GSFTLDFPTAPLTPVEAPPGIAA--------------ALGAEPRTVLDTG-PNIGDLLVE 155 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226 + L SE ++ AR RG + C G Sbjct: 156 VADEETVRGLSPDLGALAAHSERGIIATARAEDPA--------RGYDYVSRCFFPNVGID 207 Query: 227 ----SAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + + + +A + R + + G + E ++G A +G+ Sbjct: 208 EDPVTGSAHTALAPFWSERLGRPDLIGLQASSRSGRVRTELR-GGRTLLSGHAVTVIDGE 266 Query: 279 L 279 L Sbjct: 267 L 267 >gi|225874816|ref|YP_002756275.1| putative proline racemase [Acidobacterium capsulatum ATCC 51196] gi|225793967|gb|ACO34057.1| putative proline racemase [Acidobacterium capsulatum ATCC 51196] Length = 315 Score = 42.0 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + D + D + N G CG+G V++ L R++ +T G + A Sbjct: 66 LLCEPHDPACDIGVIFFNNVGYLG-MCGHGTMGVIKTLAYLGRIQPGEHRVDTPVGAVKA 124 Query: 109 KENRDGSISVD 119 +G I+VD Sbjct: 125 TLYENGLITVD 135 >gi|239626193|ref|ZP_04669224.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520423|gb|EEQ60289.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 284 Score = 42.0 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKE 110 + D + G EV CG+ V F+ R + + +T ET GIL Sbjct: 51 SESGRADLKLEYFTPTG-EVPLCGHAT--VGTFVVLRHLHMLDKPCYTIETKSGILRVTA 107 Query: 111 NRDGSISVDMGEPIL 125 DG I ++ P Sbjct: 108 GEDGLILMEQNAPRF 122 >gi|170759788|ref|YP_001787491.1| PhzF family phenazine biosynthesis protein [Clostridium botulinum A3 str. Loch Maree] gi|169406777|gb|ACA55188.1| phenazine biosynthesis protein PhzF family [Clostridium botulinum A3 str. Loch Maree] Length = 289 Score = 42.0 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 19/148 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC-DGSEVQSC 77 +V + D+++ + + ++ F + + A D +R D EV C Sbjct: 23 VVFNA----DDLSENEMKKIAGI--IGFSETAYVMKSNVA--DFKVRFFTPTD--EVDLC 72 Query: 78 GNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 G+ V L + K +T ET GIL + D S+ ++ P + Sbjct: 73 GHATVAVYYLLLHLGQIKPRMYTQETKAGILKVEVKEDMSVIMNQTLPYFYETI------ 126 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + D +I +VS G Sbjct: 127 CKEEIADSLNITIAEIEEDLPVQIVSTG 154 >gi|325519646|gb|EGC98985.1| hydroxyproline-2-epimerase [Burkholderia sp. TJI49] Length = 310 Score = 42.0 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 14/127 (11%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVLVGALLCEPVSADAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R+ ET G + A + D S+SV + +P R + D GP Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV---------RNVPAYRHAKGVAVDVPGYGP 152 Query: 149 VNHLFLR 155 V Sbjct: 153 VTGDIAW 159 >gi|302550008|ref|ZP_07302350.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] gi|302467626|gb|EFL30719.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736] Length = 272 Score = 42.0 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 + D +R +EV CG+ L + + F T G+LVA D Sbjct: 55 PEGGEADWALRWFTP-AAEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPTGD 113 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN 150 GS+++D L P + + + + + Sbjct: 114 GSVTLDFPTAPLSRVDTPDGLA-EALGAEPLTVLDTG 149 >gi|209156723|pdb|3EDN|A Chain A, Crystal Structure Of The Bacillus Anthracis Phenazine Biosynthesis Protein, Phzf Family gi|209156724|pdb|3EDN|B Chain B, Crystal Structure Of The Bacillus Anthracis Phenazine Biosynthesis Protein, Phzf Family Length = 299 Score = 42.0 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 29/184 (15%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T + ++ F++ + + A D R G E CG Sbjct: 24 IVLDA----DGLTEEEXQRIAEK--VGFNETSFVLSSEVA--DIRXRYFTP-GYEXDLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILDWKLIP 131 +G + L R ++ S T ET GIL EN + I P Sbjct: 75 HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKXRQTAPQFK----D 130 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 A S +++ VN L + P V S GN + V + + D+ + Sbjct: 131 FAGSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCERXK--PNN 182 Query: 191 PMFS 194 +F Sbjct: 183 EVFP 186 >gi|167584818|ref|ZP_02377206.1| proline racemase [Burkholderia ubonensis Bu] Length = 310 Score = 42.0 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R++ ET G + A + D S+SV Sbjct: 102 MGRIQPGVHRIETPVGTVEATLHDDLSVSV 131 >gi|228986502|ref|ZP_04146638.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773323|gb|EEM21753.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 299 Score = 42.0 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEEKNNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G I + M + LA S D P+ + N V+ Sbjct: 113 ENGEIFIKMRQAAPQFKEFTGSKGELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|294626160|ref|ZP_06704766.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599512|gb|EFF43643.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 312 Score = 41.7 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 14 IGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINC 69 +G+ D+ C + S D + + D ++ L+ +D S + N Sbjct: 26 LGDD----DLAQCRERFRSEFDHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNN 81 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G CG+G VVR L R+ ET G + + DG++SVD Sbjct: 82 VGYLG-MCGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132 >gi|229012604|ref|ZP_04169778.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides DSM 2048] gi|228748764|gb|EEL98615.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides DSM 2048] Length = 282 Score = 41.7 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ + + A D +R G E+ CG+G + Sbjct: 12 DGLTEEDMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 66 Query: 88 LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120 L R ++ + T ET GIL + N +G + M Sbjct: 67 LRERGLLEEKANLTIETKAGILPIQIGANENGETFIKM 104 >gi|294667545|ref|ZP_06732760.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602665|gb|EFF46101.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 312 Score = 41.7 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 14 IGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINC 69 +G+ D+ C + S D + + D ++ L+ +D S + N Sbjct: 26 LGDD----DLAQCRERFRSEFDHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNN 81 Query: 70 DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G CG+G VVR L R+ ET G + + DG++SVD Sbjct: 82 VGYLG-MCGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132 >gi|89096490|ref|ZP_01169382.1| hypothetical protein B14911_12657 [Bacillus sp. NRRL B-14911] gi|89088505|gb|EAR67614.1| hypothetical protein B14911_12657 [Bacillus sp. NRRL B-14911] Length = 299 Score = 41.7 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 16/151 (10%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGIL 106 + + D +R E+ CG+ + S + + FET GI+ Sbjct: 50 FLSPSGSENADFRVRYFTP-SCEIDFCGHATLSAAWIMASELDWLRHSREIRFETNIGIV 108 Query: 107 VAKENRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---S 161 +G +S +M ++ P + + + + V+ + + V Sbjct: 109 PVIFQTEGEKLVSAEMT------QISPKIKEIEYSLEELCQMIGVSSADIDERYPVRLGY 162 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 GN H + ++ + +L+ +H Sbjct: 163 TGNWHLLVPLKTREAIDQASPQFDLVEEHNR 193 >gi|221212722|ref|ZP_03585699.1| proline racemase family protein [Burkholderia multivorans CGD1] gi|221167821|gb|EEE00291.1| proline racemase family protein [Burkholderia multivorans CGD1] Length = 311 Score = 41.7 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHHDLSVSV 132 >gi|229018612|ref|ZP_04175466.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1273] gi|229024868|ref|ZP_04181299.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1272] gi|228736424|gb|EEL86988.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1272] gi|228742687|gb|EEL92833.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1273] Length = 323 Score = 41.7 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 19/145 (13%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ + + A D +R G E+ CG+G + Sbjct: 53 DGLTEEDMQRVAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 107 Query: 88 LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 L R ++ + T ET GIL + + +G + M + +P + F + Sbjct: 108 LRERGLLEEKTNLTIETKAGILPIQIGAHENGETFIKM------RQAVPQFKGFTGSKEE 161 Query: 143 RFHIGPVNHLFLRNPFVV---SMGN 164 H + L + S GN Sbjct: 162 LAHSIGLEVTDLDASVPIVYGSTGN 186 >gi|206563118|ref|YP_002233881.1| hydroxyproline-2-epimerase [Burkholderia cenocepacia J2315] gi|198039158|emb|CAR55122.1| putative proline racemase [Burkholderia cenocepacia J2315] Length = 310 Score = 41.7 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ D A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVLVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 131 >gi|313127251|ref|YP_004037521.1| phenazine biosynthesis protein phzf family [Halogeometricum borinquense DSM 11551] gi|312293616|gb|ADQ68076.1| phenazine biosynthesis protein PhzF family [Halogeometricum borinquense DSM 11551] Length = 299 Score = 41.7 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 5/118 (4%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114 S D +R E+ CG+ L + + T ET G+L + DG Sbjct: 53 SGSADRRLRFFTPT-REIDLCGHATIATHAHLYRDGVIDAGTHTVETNVGVLDVEVEADG 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + + P ++ + AR + + D V P V S G P + V Sbjct: 112 IVWMTQESPTVESVDLDYARLGEALGIDPAAFRDVGEAVP--PAVASTGLPFLVVPVN 167 >gi|83859143|ref|ZP_00952664.1| phenazine biosynthesis protein, PhzF family protein [Oceanicaulis alexandrii HTCC2633] gi|83852590|gb|EAP90443.1| phenazine biosynthesis protein, PhzF family protein [Oceanicaulis alexandrii HTCC2633] Length = 271 Score = 41.7 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 70/240 (29%), Gaps = 33/240 (13%) Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN 111 +R G EV+ CG+ +L R+ F T+ G+L Sbjct: 53 KPMGEKDQWSLRWFTP-GLEVELCGHATLASAAWLFETGRVVGPEARFHTLSGLLKVSRL 111 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG M P++ ++ P +D +G + V GN + + Sbjct: 112 EDGRY--QMDFPVIGYE--PGKADSAVVDA----LGGGEPEAVYEIERVH-GNRYQMLVF 162 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG----- 226 D+ L L + N+ R + G A G Sbjct: 163 ADEAAVVGLNPDIKALE-----AARTNVIATAPGRASDFVSRFF----GP--ASGVDEDP 211 Query: 227 -SAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +A + + V G L + + V + G A + +G + + Sbjct: 212 VTGSAHCTLAPYWFQRLEKTALKARQVGPRSGALEVRAGASGRVLLVGSALRYLDGVIRL 271 >gi|321459854|gb|EFX70903.1| hypothetical protein DAPPUDRAFT_217034 [Daphnia pulex] Length = 288 Score = 41.7 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 86/290 (29%), Gaps = 65/290 (22%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCV 84 +++ + ++ + N + I + + + S +R EV CG+ Sbjct: 30 ENDLPENLKRKIAAEMNLSETAFVTIENGETFEKSSKFALRWFTPT-HEVDLCGHATLAT 88 Query: 85 VRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 + ++ K F T+ GIL A + D SI++D + ++ + Sbjct: 89 AAIIFHKLGNKEKAIEFNTLSGILKAIQENDSSITLDFPLNPSSPYEAQNLKDIIRVVAN 148 Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA 202 F I V H ++ + D DL L + Sbjct: 149 NFEIQDVQHCSTTQKLLL---------RLADKYKRKDLEDLNPLTQ-----------ELL 188 Query: 203 RVTSLESLDLRTWERGVGLTA---------------A----------CGSAACASVVASG 237 S + GV +T A CGS A V + Sbjct: 189 TCESSGVVK------GVIVTLQGNENEGYDFYSRYFAPWVGIPEDPVCGS---AHTVLAA 239 Query: 238 CLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + GG L I+ V +TG+ EGK+ IK Sbjct: 240 YWEKVYNKDQFRARQCSKRGGDLNIKII-GQRVKLTGQVAHVLEGKIRIK 288 >gi|134101372|ref|YP_001107033.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] gi|291009568|ref|ZP_06567541.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] gi|133913995|emb|CAM04108.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] Length = 236 Score = 41.3 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 72/260 (27%), Gaps = 59/260 (22%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + D +RI DG E+ G+ R V +E Sbjct: 7 FVLPPTTPEADYRLRIFTPDG-ELPFAGHPTLGSAHAWLENGGTP------RRDDRVVQE 59 Query: 111 NRDGSISVDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMG---- 163 G + V GE +L + P R + + ++ + + V G Sbjct: 60 CGAGLVEVHRGEGVLSFAAPPTIRDGALEQEFLDEVVTAFGISRDQVLDHQWVDNGPGWA 119 Query: 164 -----NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 + +E DL A G + + EG +LRT+ G Sbjct: 120 VVRLATAQEVLALEPDLSRIPTAMVGAV----GAYPEGSPFEF---------ELRTFAPG 166 Query: 219 VG--LTAACG------------SAACAS---VVASGCLHKTNRAVSVKMLGGGLLIEWHD 261 VG CG + A + V L + G + I Sbjct: 167 VGVAEDPVCGSMNASVGQWLTRTGAAPARYRVSQGARLGRA----------GDITITADQ 216 Query: 262 NNHVFMTGEAKKEWEGKLDI 281 + V++ G G +++ Sbjct: 217 DGAVWVGGATATRIRGTINL 236 >gi|329730228|gb|EGG66618.1| phenazine biosynthesis protein, PhzF family [Staphylococcus aureus subsp. aureus 21193] Length = 274 Score = 41.3 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 29/126 (23%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVV-----RFLTSRMKRKSFTFETI 102 + + + + S + + + E++ C + + CV ++L + F+ ET+ Sbjct: 44 VGFVLNSNNPSCEYEFKYFVPN-KEMEMCVHATIACVTILKKNKYL----DKNKFSVETL 98 Query: 103 RGILVAK---ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 G+L + ++ D + V G P + +LI DK+D + VN Sbjct: 99 AGVLEIEIIGDDTDFKVKVKQGNPEISNQLI------DKVDIAKALNVSVNQF------- 145 Query: 160 VSMGNP 165 GNP Sbjct: 146 --TGNP 149 >gi|302561832|ref|ZP_07314174.1| PhzF family phenazine biosynthesis protein [Streptomyces griseoflavus Tu4000] gi|302479450|gb|EFL42543.1| PhzF family phenazine biosynthesis protein [Streptomyces griseoflavus Tu4000] Length = 229 Score = 41.3 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L + R F T G+L A D Sbjct: 95 PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHRGPVRFATRSGVLTATPGED 153 Query: 114 GSISVDMGEPILDWKLIPLA 133 G++++D L +P Sbjct: 154 GTLTLDFPTARLTAVDVPEG 173 >gi|134293388|ref|YP_001117124.1| proline racemase [Burkholderia vietnamiensis G4] gi|134136545|gb|ABO57659.1| proline racemase [Burkholderia vietnamiensis G4] Length = 320 Score = 41.3 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 53 DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 111 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 112 MGRIGPGVHLIETPVGTVEATLHDDLSVSV 141 >gi|76817590|ref|YP_337044.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 1710b] gi|126444817|ref|YP_001061576.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 668] gi|134284204|ref|ZP_01770896.1| proline racemase family protein [Burkholderia pseudomallei 305] gi|226194547|ref|ZP_03790144.1| proline racemase family protein [Burkholderia pseudomallei Pakistan 9] gi|242311043|ref|ZP_04810060.1| proline racemase family protein [Burkholderia pseudomallei 1106b] gi|254264314|ref|ZP_04955179.1| proline racemase family protein [Burkholderia pseudomallei 1710a] gi|76582063|gb|ABA51537.1| unknown [Burkholderia pseudomallei 1710b] gi|126224308|gb|ABN87813.1| proline racemase family protein [Burkholderia pseudomallei 668] gi|134244407|gb|EBA44513.1| proline racemase family protein [Burkholderia pseudomallei 305] gi|225933375|gb|EEH29365.1| proline racemase family protein [Burkholderia pseudomallei Pakistan 9] gi|242134282|gb|EES20685.1| proline racemase family protein [Burkholderia pseudomallei 1106b] gi|254215316|gb|EET04701.1| proline racemase family protein [Burkholderia pseudomallei 1710a] Length = 320 Score = 41.3 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 53 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 111 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 112 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 141 >gi|229110846|ref|ZP_04240408.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock1-15] gi|228672556|gb|EEL27838.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock1-15] Length = 264 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 19 SKVGDIRMRYFTP-GFEMNLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 77 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 78 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDESLPIVYGSTGNWTVI 131 >gi|53721367|ref|YP_110352.1| hypothetical protein BPSS0332 [Burkholderia pseudomallei K96243] gi|126456094|ref|YP_001074516.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 1106a] gi|167818562|ref|ZP_02450242.1| proline racemase family protein [Burkholderia pseudomallei 91] gi|167826941|ref|ZP_02458412.1| proline racemase family protein [Burkholderia pseudomallei 9] gi|167848457|ref|ZP_02473965.1| proline racemase family protein [Burkholderia pseudomallei B7210] gi|167897009|ref|ZP_02484411.1| proline racemase family protein [Burkholderia pseudomallei 7894] gi|167905392|ref|ZP_02492597.1| proline racemase family protein [Burkholderia pseudomallei NCTC 13177] gi|167913686|ref|ZP_02500777.1| proline racemase family protein [Burkholderia pseudomallei 112] gi|167921626|ref|ZP_02508717.1| proline racemase family protein [Burkholderia pseudomallei BCC215] gi|217422791|ref|ZP_03454293.1| proline racemase family protein [Burkholderia pseudomallei 576] gi|237510248|ref|ZP_04522963.1| proline racemase family protein [Burkholderia pseudomallei MSHR346] gi|254182677|ref|ZP_04889270.1| proline racemase family protein [Burkholderia pseudomallei 1655] gi|254189353|ref|ZP_04895863.1| proline racemase family protein [Burkholderia pseudomallei Pasteur 52237] gi|254195562|ref|ZP_04901990.1| proline racemase family protein [Burkholderia pseudomallei S13] gi|254299404|ref|ZP_04966853.1| proline racemase family protein [Burkholderia pseudomallei 406e] gi|81607366|sp|Q63NG7|HYPRE_BURPS RecName: Full=4-hydroxyproline epimerase; AltName: Full=Hydroxyproline-2-epimerase; Short=BpHyPRE gi|52211781|emb|CAH37780.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|126229862|gb|ABN93275.1| proline racemase family protein [Burkholderia pseudomallei 1106a] gi|154434616|gb|ABS82397.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei] gi|157809356|gb|EDO86526.1| proline racemase family protein [Burkholderia pseudomallei 406e] gi|157937031|gb|EDO92701.1| proline racemase family protein [Burkholderia pseudomallei Pasteur 52237] gi|169652309|gb|EDS85002.1| proline racemase family protein [Burkholderia pseudomallei S13] gi|184213211|gb|EDU10254.1| proline racemase family protein [Burkholderia pseudomallei 1655] gi|217393699|gb|EEC33719.1| proline racemase family protein [Burkholderia pseudomallei 576] gi|235002453|gb|EEP51877.1| proline racemase family protein [Burkholderia pseudomallei MSHR346] Length = 310 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 43 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|53716979|ref|YP_106025.1| putative proline racemase [Burkholderia mallei ATCC 23344] gi|124382300|ref|YP_001025988.1| hydroxyproline-2-epimerase [Burkholderia mallei NCTC 10229] gi|254176002|ref|ZP_04882660.1| putative proline racemase [Burkholderia mallei ATCC 10399] gi|254200878|ref|ZP_04907243.1| putative proline racemase [Burkholderia mallei FMH] gi|52422949|gb|AAU46519.1| putative proline racemase [Burkholderia mallei ATCC 23344] gi|147748490|gb|EDK55565.1| putative proline racemase [Burkholderia mallei FMH] gi|160697044|gb|EDP87014.1| putative proline racemase [Burkholderia mallei ATCC 10399] gi|261826735|gb|ABN00436.2| putative proline racemase [Burkholderia mallei NCTC 10229] Length = 320 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 53 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 111 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 112 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 141 >gi|110667228|ref|YP_657039.1| phenazine biosynthesis protein [Haloquadratum walsbyi DSM 16790] gi|109624975|emb|CAJ51388.1| probable phenazine biosynthesis protein [Haloquadratum walsbyi DSM 16790] Length = 317 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 11/163 (6%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 + + + A++ + + + I D + A R + +EV CG+ + Sbjct: 29 EGLADNQQRAIAAE--LGASETVFITDSEVAER--RFRYFSPT-TEVDLCGHATIAAYAY 83 Query: 88 L--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145 L T + + T ET G++ + DG +V M + I LA D D Sbjct: 84 LDATGEIDPGTHTVETNVGVIEITVDDDG--TVWMRQQSPTVASIDLAYD-DVADALGID 140 Query: 146 IGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLL 187 + + P + S G P I V + D+ + Sbjct: 141 AAALRDIGDELPLAIASTGLPFIIVPVNFLEHVGDVNPDAAAI 183 >gi|325922812|ref|ZP_08184540.1| proline racemase [Xanthomonas gardneri ATCC 19865] gi|325546699|gb|EGD17825.1| proline racemase [Xanthomonas gardneri ATCC 19865] Length = 312 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + + D ++ L+ +D S + N G CG+G VVR L Sbjct: 43 DQWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-MCGHGTIGVVRTLAA 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + + DG++SVD Sbjct: 102 LGRIAPGQHRIETPVGTVGVELAEDGTVSVD 132 >gi|323304731|gb|EGA58492.1| Yhi9p [Saccharomyces cerevisiae FostersB] Length = 291 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%) Query: 15 GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN + VI+ +N ++ + + A++ N + + D D +RI SE Sbjct: 17 GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 73 Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + G+ + K T ++ + I+++ G + Sbjct: 74 LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 128 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +M D + + F++ P ++ G + VED ++ +LA Sbjct: 129 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETGFNANPNFAMLAHQTKQ 186 Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242 ++ V + +A ++ +R +E V CGS + A ++K Sbjct: 187 NDHVGIILAGPKKEAAIKNSYEMRAFAPXINVYEDPV-----CGSGSVALARYLQEVYKF 241 Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281 + + + GG L I+ +N ++ G A +GK+ + Sbjct: 242 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 291 >gi|257076211|ref|ZP_05570572.1| Proline racemase [Ferroplasma acidarmanus fer1] Length = 330 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 49/237 (20%) Query: 36 NALSTDDNTHFDQIMLIH-DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR------FL 88 L + H DQ I + D + I S + CG+ V ++ Sbjct: 52 KILLLEPRGHKDQFGAILLPPVNPDSDYTV-IYPTTESYLDMCGHATIGVSTALVALGYV 110 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 K+ ++T+ G + A + ++ GEP + ++ + F K + + Sbjct: 111 PFEGNEKTLVYDTVAGTVKA------MVKIENGEP-VSVSIVDVKSYFVKKIKVNVNGKN 163 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVED---DLYHY---DLASFGNLLAKH------PMFSE- 195 V+ GN +AI +D D+ DL ++G ++ + ++ E Sbjct: 164 VDVNISYG------GNFYAIVNSKDLGVDVEPEYIDDLLAYGKIIREKAYETLKELYPEN 217 Query: 196 GVNLS-IARVTSLESLDLRTWERGVGLTAA--------CGSAACASVVASGCLHKTN 243 NL +A +T D R +T A CG+ A K Sbjct: 218 RKNLEPLAMITDNNH-DYR-----AIVTFAGNSFDRSPCGTGTAARAAFLVHEGKLK 268 >gi|167741384|ref|ZP_02414158.1| proline racemase family protein [Burkholderia pseudomallei 14] Length = 310 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 43 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIGSGVHRIETPVGDVEATLHDDLSVSV 131 >gi|67643348|ref|ZP_00442095.1| proline racemase family protein [Burkholderia mallei GB8 horse 4] gi|126446932|ref|YP_001078080.1| hydroxyproline-2-epimerase [Burkholderia mallei NCTC 10247] gi|167004231|ref|ZP_02269996.1| putative proline racemase [Burkholderia mallei PRL-20] gi|254204844|ref|ZP_04911197.1| putative proline racemase [Burkholderia mallei JHU] gi|254358955|ref|ZP_04975227.1| putative proline racemase [Burkholderia mallei 2002721280] gi|126239786|gb|ABO02898.1| putative proline racemase [Burkholderia mallei NCTC 10247] gi|147754430|gb|EDK61494.1| putative proline racemase [Burkholderia mallei JHU] gi|148028142|gb|EDK86102.1| putative proline racemase [Burkholderia mallei 2002721280] gi|238524676|gb|EEP88108.1| proline racemase family protein [Burkholderia mallei GB8 horse 4] gi|243060392|gb|EES42578.1| putative proline racemase [Burkholderia mallei PRL-20] Length = 310 Score = 40.9 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 43 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|257865736|ref|ZP_05645389.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus casseliflavus EC30] gi|257872071|ref|ZP_05651724.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus casseliflavus EC10] gi|257799670|gb|EEV28722.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus casseliflavus EC30] gi|257806235|gb|EEV35057.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus casseliflavus EC10] Length = 285 Score = 40.9 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 12/104 (11%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +T A++ + F + + + D EV CG+ + Sbjct: 27 EQPLTPQQKLAIAKE--LGFSETAFL--SKSPEADFRFDYFTP-KEEVDLCGHAT--IAS 79 Query: 87 FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 F +++ ++ + +T G L +DG I ++ +P+ Sbjct: 80 FALLSYLNKLSKQQYRIDTNAGRLSITI-KDGVIFMEQNKPLFS 122 >gi|297622131|ref|YP_003710268.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU 86-1044] gi|297377432|gb|ADI39262.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU 86-1044] Length = 284 Score = 40.9 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 VID G +D N L T + I + A D +R G E++ CG+ Sbjct: 25 VIDASGMNDKEMKHLANEL-KHSETGY-----ILPSETA--DFKLRYFTPTGDEIRFCGH 76 Query: 80 GMRCVVRFLTS------RMKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLIPL 132 ++K F ET G++ + + G S + P ++ + P Sbjct: 77 AT-IGAMSAMEQDGWVKHGEKKKFRAETNAGVINLEIDCTAGKPSFNFESPEVNLE--PF 133 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFV 159 S + +D P+ R ++ Sbjct: 134 TVSLEPLDFPDVIASPMIETGNRYLYL 160 >gi|19743770|gb|AAL92521.1| MAWDBP [Rattus norvegicus] Length = 288 Score = 40.9 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 68/237 (28%), Gaps = 51/237 (21%) Query: 72 SEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGEPIL---- 125 SEV CG+ L ++K + TF T+ G L A+ DG + P Sbjct: 74 SEVPLCGHARMASAAVLFHKIKNVNSTLTFVTLSGELKARRAEDGIVLDFPLYPTFPQDF 133 Query: 126 -DWKLIPLARSFDKMDRDRFHIGPVNHLFLR----------NPFVVSMGNPHAIFFVEDD 174 + K + A D +D + L +R V+ P Sbjct: 134 HEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKVNT-EPLPGIEKTGK 192 Query: 175 LYHYDLASFG-------NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L G F+ V + + + + Sbjct: 193 VKGLILTVKGESGGQTTPYDFYSRYFAPRVGV------PEDPV----------------T 230 Query: 228 AACASVVASGCLHKTN----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + +V++S + RA GG L I + V M G A EG L Sbjct: 231 GSAHTVLSSYWSQQVGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGMLT 287 >gi|311108024|ref|YP_003980877.1| proline racemase family protein [Achromobacter xylosoxidans A8] gi|310762713|gb|ADP18162.1| proline racemase family protein [Achromobacter xylosoxidans A8] Length = 337 Score = 40.9 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 15/129 (11%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG+E C Sbjct: 34 ILEKRAFLEQNYDWLRKALMREPRGHKDMFGVFLTPPSSPEFDAGLIYI--DGTEYSHMC 91 Query: 78 GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126 G+G V + + FET G++V++ +G + + Sbjct: 92 GHGTIAVSMAMVAHGLVPRGKDGITKIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151 Query: 127 WKLIPLARS 135 + IP+ Sbjct: 152 AQDIPVELP 160 >gi|228966300|ref|ZP_04127356.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar sotto str. T04001] gi|228793388|gb|EEM40935.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar sotto str. T04001] Length = 299 Score = 40.9 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 15/143 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ +++ + + D +R G E+ CG+G + Sbjct: 29 DGLTEEEMQIIAEK--IGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWKLIPLARSFD 137 L + ++ + T ET GIL + N++G + M + LA S Sbjct: 84 LREKGLLEEKSNLTIETKAGILPIQIGVNKNGETFIKMRQAAPQFKEFTGSKEKLAHSIG 143 Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160 D P+ + N V+ Sbjct: 144 LEINDLDVSLPIVYGSTGNWTVI 166 >gi|163839671|ref|YP_001624076.1| MFS transporter [Renibacterium salmoninarum ATCC 33209] gi|162953147|gb|ABY22662.1| MFS transporter [Renibacterium salmoninarum ATCC 33209] Length = 737 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 21/211 (9%) Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDWKLIPLARS 135 CG+ L R S+ F+T G + + ++ G SI+ ++ K ++ Sbjct: 531 CGHATVATAVALAERYGVGSYLFDTKSGEIKLETSQHGDSITASFT--SVEPKGTEISAE 588 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + + P + GNPH + + +DL +D F L + M + Sbjct: 589 VLATLLELLGLTAADLRVDYPPRIAYAGNPHPVLVISEDLI-FDSFEFDPALIRQLMDQQ 647 Query: 196 GV--NLSIARVTSLESLDLR----TWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248 G +++ R+ + ++ + R GV A GSAA + L V Sbjct: 648 GWPGTITVLRLLNAQTFEARNLFPV---GVITEDPATGSAAASVGAYLRALGLVQTPTQV 704 Query: 249 KMLGGG-------LLIEWHDNNHVFMTGEAK 272 ++ G L ++ ++ + +TG A Sbjct: 705 QIQQGRHVGRPSILEVDIPEHGGITVTGSAT 735 >gi|75760476|ref|ZP_00740515.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898478|ref|YP_002446889.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus G9842] gi|228901897|ref|ZP_04066065.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL 4222] gi|74492037|gb|EAO55214.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544254|gb|ACK96648.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus G9842] gi|228857749|gb|EEN02241.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL 4222] Length = 299 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 ++G + M + LA S D P+ + N V+ Sbjct: 113 KNGETFIKMRQAAPQFKEFTGSKEKLAHSIGLEINDLDVSLPIVYGSTGNWTVI 166 >gi|83718189|ref|YP_440255.1| hydroxyproline-2-epimerase [Burkholderia thailandensis E264] gi|257140883|ref|ZP_05589145.1| hydroxyproline-2-epimerase [Burkholderia thailandensis E264] gi|83652014|gb|ABC36078.1| proline racemase, putative [Burkholderia thailandensis E264] Length = 310 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 28 DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75 D ++ + AL+ D + D ++ L+ + A A + N G Sbjct: 28 DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86 Query: 76 SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 CG+G +VR L R+ ET G + A + D S+SV Sbjct: 87 MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|77465520|ref|YP_355023.1| putative proline racemase [Rhodobacter sphaeroides 2.4.1] gi|221369524|ref|YP_002520620.1| Proline racemase [Rhodobacter sphaeroides KD131] gi|77389938|gb|ABA81122.1| putative proline racemase [Rhodobacter sphaeroides 2.4.1] gi|221162576|gb|ACM03547.1| Proline racemase [Rhodobacter sphaeroides KD131] Length = 337 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG E C Sbjct: 34 ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91 Query: 78 GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDG 114 G+G V FET G++VA+ +G Sbjct: 92 GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEG 135 >gi|269124816|ref|YP_003298186.1| phenazine biosynthesis protein PhzF family [Thermomonospora curvata DSM 43183] gi|268309774|gb|ACY96148.1| phenazine biosynthesis protein PhzF family [Thermomonospora curvata DSM 43183] Length = 287 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 19/235 (8%) Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG--ILVAKEN 111 +R + +EV CG+ L R+ F T G + ++ Sbjct: 56 PPDGPGRSFTVRYFAPE-TEVPFCGHATVAAAVALAERIGPGPLEFATRSGPVPVEVEQE 114 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG++ + + +P + H P P + G H + Sbjct: 115 ADGTLRATLTSVEPYVEQVPDQDVSQALAA--LHWRPDELDPALPPRIAFAGARHLVLAA 172 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR----TWERGVGLTAACGS 227 L + L + L + S +R GV A GS Sbjct: 173 ATRARLAALDYDFDALRAFMTARDLTTLHLVWRESKHVFHVRDPFPV--GGVREDPATGS 230 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGG-------LLIEWHDNN-HVFMTGEAKKE 274 AA A L + +V + G L ++ H+ + V ++G A + Sbjct: 231 AAAAFGAYLRELGLVDATATVTLHQGQDMGRPALLRVDLHEGDRRVRVSGTAVRI 285 >gi|167616960|ref|ZP_02385591.1| proline racemase, putative [Burkholderia thailandensis Bt4] Length = 310 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 28 DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75 D ++ + AL+ D + D ++ L+ + A A + N G Sbjct: 28 DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86 Query: 76 SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 CG+G +VR L R+ ET G + A + D S+SV Sbjct: 87 MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|84624640|ref|YP_452012.1| hypothetical protein XOO_2983 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368580|dbj|BAE69738.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 312 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 22 DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77 D+ C D S D + + D ++ L+ +D S + N G C Sbjct: 30 DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 88 Query: 78 GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G+G VVR L R+ ET G + + DG++SVD Sbjct: 89 GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 132 >gi|323337263|gb|EGA78516.1| Yhi9p [Saccharomyces cerevisiae Vin13] gi|323348355|gb|EGA82603.1| Yhi9p [Saccharomyces cerevisiae Lalvin QA23] Length = 291 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%) Query: 15 GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN + VI+ +N ++ + + A++ N + + D D +RI SE Sbjct: 17 GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 73 Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + G+ + K T ++ + I+++ G + Sbjct: 74 LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 128 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +M D + + F++ P ++ G + VED ++ +LA Sbjct: 129 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 186 Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242 ++ V + +A ++ +R +E V CGS + A ++K Sbjct: 187 NDHVGIILAGPKKEAAIKNSYEMRAFAPMINVYEDPV-----CGSGSVALARYLQEVYKF 241 Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281 + + + GG L I+ +N ++ G A +GK+ + Sbjct: 242 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 291 >gi|151943973|gb|EDN62266.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|190405814|gb|EDV09081.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi|207344744|gb|EDZ71783.1| YHR029Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256270606|gb|EEU05780.1| Yhi9p [Saccharomyces cerevisiae JAY291] gi|259147058|emb|CAY80313.1| Yhi9p [Saccharomyces cerevisiae EC1118] Length = 294 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%) Query: 15 GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN + VI+ +N ++ + + A++ N + + D D +RI SE Sbjct: 20 GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76 Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + G+ + K T ++ + I+++ G + Sbjct: 77 LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +M D + + F++ P ++ G + VED ++ +LA Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189 Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242 ++ V + +A ++ +R +E V CGS + A ++K Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPMINVYEDPV-----CGSGSVALARYLQEVYKF 244 Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281 + + + GG L I+ +N ++ G A +GK+ + Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294 >gi|73535699|pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The Phenazine Biosynthesis Phzf Enzyme Superfamily Length = 300 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%) Query: 15 GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN + VI+ +N ++ + + A++ N + + D D +RI SE Sbjct: 20 GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76 Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + G+ + K T ++ + I+++ G + Sbjct: 77 LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +M D + + F++ P ++ G + VED ++ +LA Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189 Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242 ++ V + +A ++ +R +E V CGS + A ++K Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPV-----CGSGSVALARYLQEVYKF 244 Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281 + + + GG L I+ +N ++ G A +GK+ + Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294 >gi|6321818|ref|NP_011894.1| Yhi9p [Saccharomyces cerevisiae S288c] gi|731643|sp|P38765|YHI9_YEAST RecName: Full=Uncharacterized isomerase YHI9 gi|500699|gb|AAB68880.1| Yhr029cp [Saccharomyces cerevisiae] gi|45269543|gb|AAS56152.1| YHR029C [Saccharomyces cerevisiae] gi|285809933|tpg|DAA06720.1| TPA: Yhi9p [Saccharomyces cerevisiae S288c] Length = 294 Score = 40.5 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%) Query: 15 GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN + VI+ +N ++ + + A++ N + + D D +RI SE Sbjct: 20 GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76 Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + G+ + K T ++ + I+++ G + Sbjct: 77 LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 +M D + + F++ P ++ G + VED ++ +LA Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189 Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242 ++ V + +A ++ +R +E V CGS + A ++K Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPV-----CGSGSVALARYLQEVYKF 244 Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281 + + + GG L I+ +N ++ G A +GK+ + Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294 >gi|172063061|ref|YP_001810712.1| proline racemase [Burkholderia ambifaria MC40-6] gi|171995578|gb|ACB66496.1| proline racemase [Burkholderia ambifaria MC40-6] Length = 311 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R++ ET G + A + D S+SV Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|171321875|ref|ZP_02910772.1| proline racemase [Burkholderia ambifaria MEX-5] gi|171092835|gb|EDT38098.1| proline racemase [Burkholderia ambifaria MEX-5] Length = 311 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R++ ET G + A + D S+SV Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|170735763|ref|YP_001777023.1| proline racemase [Burkholderia cenocepacia MC0-3] gi|169817951|gb|ACA92533.1| proline racemase [Burkholderia cenocepacia MC0-3] Length = 310 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ D A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 131 >gi|167578866|ref|ZP_02371740.1| proline racemase, putative [Burkholderia thailandensis TXDOH] Length = 310 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 28 DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75 D ++ + AL+ D + D ++ L+ + A A + N G Sbjct: 28 DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86 Query: 76 SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 CG+G +VR L R+ ET G + A + D S+SV Sbjct: 87 MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|332561178|ref|ZP_08415496.1| proline racemase [Rhodobacter sphaeroides WS8N] gi|332274976|gb|EGJ20292.1| proline racemase [Rhodobacter sphaeroides WS8N] Length = 337 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG E C Sbjct: 34 ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91 Query: 78 GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDG 114 G+G V FET G++VA+ +G Sbjct: 92 GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEG 135 >gi|220905239|ref|YP_002480551.1| hypothetical protein Ddes_1977 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869538|gb|ACL49873.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 283 Score = 40.5 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIE-WHDNNHVF--MTGEAKKEWEGKL 279 ACGS A A ++ + + S+ GG L + + ++ + G +G++ Sbjct: 218 ACGSGALALALSRAKSNG-GKHFSIMQPGGSPLEVRLFSEDGTAMAGINGPVALVADGQV 276 Query: 280 DIKTG 284 + G Sbjct: 277 WLPGG 281 >gi|323965468|gb|EGB60923.1| proline racemase [Escherichia coli M863] Length = 315 Score = 40.5 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 16/156 (10%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + A + N G + CG+G +V L R+K ET G + A Sbjct: 69 LLCEPLSPHATAGVIFFNNAG-YLNMCGHGTIGLVASLAWLGRIKPGVHRIETPVGDVNA 127 Query: 109 KENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + DGS+SV+ P W K + + + + D N FL N + P Sbjct: 128 TLHDDGSVSVE-NVPAWRWQKQVSVETAVGTVTGD--IAWGGNWFFLINDHPFDI-VPEQ 183 Query: 168 I-------FFVEDDLYHY-DLASFGNLLAKHPMFSE 195 I + V + L + + G ++ +F++ Sbjct: 184 IPQLTEYAWAVREGLDNAGIVGENGGIIDHIELFAD 219 >gi|228940487|ref|ZP_04103055.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973402|ref|ZP_04133989.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979966|ref|ZP_04140284.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis Bt407] gi|228779722|gb|EEM27971.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis Bt407] gi|228786319|gb|EEM34311.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819188|gb|EEM65245.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941123|gb|AEA17019.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 40.5 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 15/143 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ +++ + + D +R G E+ CG+G + Sbjct: 29 DGLTEEEMQIIAEK--IGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WKLIPLARSFD 137 L + ++ + T ET GIL + N +G + M P LA S Sbjct: 84 LREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIG 143 Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160 D P+ + N V+ Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166 >gi|166711629|ref|ZP_02242836.1| hypothetical protein Xoryp_09245 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 312 Score = 40.5 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 22 DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77 D+ C D S D + + D ++ L+ +D S + N G C Sbjct: 30 DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 88 Query: 78 GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G+G VVR L R+ ET G + + DG++SVD Sbjct: 89 GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 132 >gi|153803331|ref|ZP_01957917.1| phenazine biosynthesis protein PhzF family [Vibrio cholerae MZO-3] gi|124121115|gb|EAY39858.1| phenazine biosynthesis protein PhzF family [Vibrio cholerae MZO-3] Length = 227 Score = 40.5 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 18/215 (8%) Query: 73 EVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 EV CG+G V L + F+T+ GIL A + + SI + P+LD ++ Sbjct: 24 EVSLCGHGTLAVAHILKEQGGYKTGDVLEFKTLSGILTAHLDEN-SIHLVFPTPMLDMQV 82 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGNLLA 188 P + + + ++ + V+ + N + + D L G L+ Sbjct: 83 SPNIGMLNCLGLAQSNLIAYGQFDTKQIIVIVIDNESLLNDLSPDFSGLSKLKGRGVLVT 142 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVASGCLHKTN-RAV 246 ++ GV GSA CA V S L K + Sbjct: 143 A----KSDSDVDFV----SRYFAPWV---GVNEDPVTGSAHCALCVYWSKRLGKFQLKGY 191 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 GG + +E + N V ++G+A G++ I Sbjct: 192 QASKRGGFVDVELLNPNQVKLSGQAVTVLSGRMKI 226 >gi|30021522|ref|NP_833153.1| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579] gi|229128695|ref|ZP_04257673.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-Cer4] gi|29897077|gb|AAP10354.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579] gi|228654888|gb|EEL10748.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-Cer4] Length = 299 Score = 40.5 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI----LVAK 109 D +R G E+ CG+G + L + ++ + T ET GI +V Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIVVN 112 Query: 110 ENRDGSISVDMGEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 EN + I + P LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|327250276|gb|EGE61995.1| proline racemase family protein [Escherichia coli STEC_7v] Length = 292 Score = 40.5 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 16/156 (10%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + A + N G + CG+G +V L R+K ET G + A Sbjct: 46 LLCEPLSPHATAGVIFFNNAG-YLNMCGHGTIGLVASLAWLGRIKPGVHRIETPVGDVNA 104 Query: 109 KENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + DGS+SV+ P W K + + + + D N FL N + P Sbjct: 105 TLHDDGSVSVE-NVPAWRWQKQVSVETAVGTVTGD--IAWGGNWFFLINDHPFDI-VPEQ 160 Query: 168 I-------FFVEDDLYHY-DLASFGNLLAKHPMFSE 195 I + V + L + + G ++ +F++ Sbjct: 161 IPQLTEYAWAVREGLDNAGIVGENGGIIDHIELFAD 196 >gi|37526156|ref|NP_929500.1| hypothetical protein plu2243 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785586|emb|CAE14536.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 320 Score = 40.5 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 L+ D + N G CG+G ++ L + ET G++ A Sbjct: 73 LLCPPAVPDADMGVIFFNNAGYLG-MCGHGTMGLIASLHHLGWLTPSKYKIETPVGMVEA 131 Query: 109 KENRDGSISV 118 ++DG++SV Sbjct: 132 VLHQDGAVSV 141 >gi|107026574|ref|YP_624085.1| proline racemase [Burkholderia cenocepacia AU 1054] gi|116692236|ref|YP_837769.1| proline racemase [Burkholderia cenocepacia HI2424] gi|105895948|gb|ABF79112.1| proline racemase [Burkholderia cenocepacia AU 1054] gi|116650236|gb|ABK10876.1| proline racemase [Burkholderia cenocepacia HI2424] Length = 359 Score = 40.5 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 14/127 (11%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ D A + N G CG+G VVR L Sbjct: 92 DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R++ ET G + A + D S+SV + +P R + D GP Sbjct: 151 MGRIEPGVHRIETPVGTVEATLHDDLSVSV---------RNVPAYRHAQGVVLDVPGYGP 201 Query: 149 VNHLFLR 155 V Sbjct: 202 VKGDIAW 208 >gi|260555491|ref|ZP_05827712.1| proline racemase [Acinetobacter baumannii ATCC 19606] gi|260412033|gb|EEX05330.1| proline racemase [Acinetobacter baumannii ATCC 19606] Length = 310 Score = 40.5 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 72/256 (28%), Gaps = 51/256 (19%) Query: 13 GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68 G G DM ++ D + + D ++ L+ + A + N Sbjct: 27 GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126 G CG+G +V L K + T ET G + A + D S+SV Sbjct: 81 NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183 + +P R ++ D G V + N H D+L ++ Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQRVSSDNLDQLTEYAWTVR 190 Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228 G + +F+ + ++R CG+ Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239 Query: 229 ACASVVASGCLHKTNR 244 A + K Sbjct: 240 TSAKIACLAADGKLES 255 >gi|228959617|ref|ZP_04121297.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800064|gb|EEM47001.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 40.5 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M P LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|290958825|ref|YP_003490007.1| hypothetical protein SCAB_43981 [Streptomyces scabiei 87.22] gi|260648351|emb|CBG71462.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 318 Score = 40.5 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 12/198 (6%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D G D L+ + + + +A+ +R + +EV CG Sbjct: 58 VVLDASGL------DDAAMLAIAAEVGYSETAFVTAADEAARRFRVRYFSP-LAEVAFCG 110 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGIL---VAKENRDGSISVDMGEPILDWKLIPLARS 135 + + L R+ F+T+ G + + + DG+ + D + P Sbjct: 111 HATVALAVALAERLGPGEVLFDTLAGEIPVATSVDASDGTARATLTSVPADSR--PATAP 168 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + P V G H + DLA + LA+ + Sbjct: 169 ERDAALEALGWSDGDLDPALPPHVAFGGVRHLVLAAGSRARLADLAYDFDALAEVMRRHD 228 Query: 196 GVNLSIARVTSLESLDLR 213 + + S + R Sbjct: 229 WTTVHLVWRESPDRFHAR 246 >gi|260816350|ref|XP_002602934.1| hypothetical protein BRAFLDRAFT_251802 [Branchiostoma floridae] gi|229288248|gb|EEN58946.1| hypothetical protein BRAFLDRAFT_251802 [Branchiostoma floridae] Length = 297 Score = 40.5 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 78/256 (30%), Gaps = 56/256 (21%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDG 114 +S +R +EV CG+ F + TF+T+ G L A+ D Sbjct: 67 SSSSKFGLRWFTPT-NEVALCGHATLASAATLFYMMKNPSSQLTFQTLSGDLFARREGDF 125 Query: 115 SISVDMGEPILDWK-----------LIPLARSFDKMDRDRFHIGPVNHLFLRN-----PF 158 IS+D+ E + +P+ F + + + P Sbjct: 126 -ISLDLPENKSQPQVQTYTLIIVVGDLPVQDLFVSHTAKKLVVRLQDGTTRSTLESLRPD 184 Query: 159 VVSMGNPHA-------IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLES 209 SM H I V+ L + + + G + + A + Sbjct: 185 TASMLAAHTQDIIRGVIVTVKGSLENGCVDNHGEMCDFISRY-------FAPWNGIPEDP 237 Query: 210 LDLRTWERGVGLTAACGSAACASVVA---SGCLHKTNRAVS-VKMLGGGLLIEWHDNNHV 265 + + + +V+A + L KT GG L + ++ V Sbjct: 238 V----------------TGSAHTVLASYWAKELGKTEFYARQCSARGGDLKVRLREDGRV 281 Query: 266 FMTGEAKKEWEGKLDI 281 + G+A +G + I Sbjct: 282 DVAGKATVVLQGMIRI 297 >gi|229145999|ref|ZP_04274378.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST24] gi|296503932|ref|YP_003665632.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis BMB171] gi|228637607|gb|EEK94058.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST24] gi|296324984|gb|ADH07912.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis BMB171] Length = 299 Score = 40.5 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M P LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|58582764|ref|YP_201780.1| hypothetical protein XOO3141 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427358|gb|AAW76395.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 341 Score = 40.5 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 22 DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77 D+ C D S D + + D ++ L+ +D S + N G C Sbjct: 59 DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 117 Query: 78 GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G+G VVR L R+ ET G + + DG++SVD Sbjct: 118 GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 161 >gi|228953688|ref|ZP_04115728.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805922|gb|EEM52501.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 40.5 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 15/143 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ +++I + D +R G E+ CG+G + Sbjct: 29 DGLTEEEMQIIAEK--VGYNEITFVL--STEVGDIRMRYFTP-GFEMDLCGHGTVGTIFA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWKLIPLARSFD 137 L + ++ + T ET GIL + N +G + M + LA S Sbjct: 84 LREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSTEELAHSIG 143 Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160 D P+ + N V+ Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166 >gi|299770655|ref|YP_003732681.1| proline racemase [Acinetobacter sp. DR1] gi|298700743|gb|ADI91308.1| proline racemase [Acinetobacter sp. DR1] Length = 310 Score = 40.5 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 22/172 (12%) Query: 13 GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68 G G DM ++ D + + D ++ L+ + A + N Sbjct: 27 GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPLNPKASAGVIFFN 80 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126 G CG+G +V L K + T ET G + A + D S+SV Sbjct: 81 NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +P R ++ D G V + N H D+L Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQHVASDNLDQL 182 >gi|222096880|ref|YP_002530937.1| phenazine biosynthesis protein, phzf family [Bacillus cereus Q1] gi|221240938|gb|ACM13648.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus Q1] Length = 299 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ +++ + + A D +R G E+ CG+G + Sbjct: 29 DGLTEEEMQRIAEK--VGYNETTFVLSSEVA--DIRMRYFTP-GYEMDLCGHGTVGTIYA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAKENRD 113 L R ++ + T ET GIL + + + Sbjct: 84 LRERGLLEEKTNITIETKAGILPIQIDVN 112 >gi|300173344|ref|YP_003772510.1| hypothetical protein LEGAS_1043 [Leuconostoc gasicomitatum LMG 18811] gi|299887723|emb|CBL91691.1| Uncharacterized isomerase [Leuconostoc gasicomitatum LMG 18811] Length = 283 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENR 112 + D + EV CG+ + F L +++ + ++T ET G+L + + Sbjct: 52 SSVADFCLEYFTPT-EEVPLCGHAT--IGTFAILNLLNKLSKNNYTIETKSGVLSIEVDP 108 Query: 113 DGSISVDMGEPIL 125 DG + + P Sbjct: 109 DGMVFMAQNTPTF 121 >gi|229047089|ref|ZP_04192710.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH676] gi|228724249|gb|EEL75585.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH676] Length = 299 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M P LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|292654860|ref|YP_003534757.1| diaminopimelate epimerase [Haloferax volcanii DS2] gi|291372576|gb|ADE04803.1| diaminopimelate epimerase [Haloferax volcanii DS2] Length = 299 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 81/274 (29%), Gaps = 32/274 (11%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D + ++ + AL+ + + + A+ D IR EV CG+ Sbjct: 29 DGLDAEQMRALAAE--LGASETAFV--CSSAAADRRIRYFTPQ-QEVDLCGHATIAAHAH 83 Query: 88 LTSRMKRK--SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145 L + + + T ET G L + G + + P + + R + D Sbjct: 84 LAAERDLEPGTHTLETNVGTLDIELGDLGEVWMTQDAPTVRPLEVDYDRLAAALGVDDAA 143 Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVE-----DDLYHYDLASFGNLLAKHPM-FSEGVNL 199 + V V S G P + V D A F Sbjct: 144 LRDVGADLP--VAVASTGLPFLVVPVNFLEHLSAADPDDAAIADLAAEHDAAGFYAYT-- 199 Query: 200 SIARVTSLESLDLRTWERGVG--LTAACGSAACASVVASGCLHKTNRAVS---------V 248 + +L R + G+G A G+AA A + + V Sbjct: 200 -FDAIDGDSTLHARCFAPGIGISEDPATGTAAGACGAYLRQVGAFDSMPDELRFEQGHFV 258 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 G + + + G A + ++G++ + Sbjct: 259 DRPG---TVRVQVGAEIRVGGRAVQSFDGEIVVP 289 >gi|152975883|ref|YP_001375400.1| PhzF family phenazine biosynthesis protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024635|gb|ABS22405.1| phenazine biosynthesis protein PhzF family [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D G +T + ++ F++ + A D IR G E+ CG Sbjct: 24 IVLDAEG----LTDYEMQRIAEK--VGFNETAFVFPSNVA--DIKIRYFTP-GHEMNLCG 74 Query: 79 NGMRCVVRFLTSRMKRKSFT---FETIRGIL--VAKENRDGSISVDMGEPI-----LDWK 128 + + L +R K ET GIL + + +G + V M + Sbjct: 75 HATVATIYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVRMRQVEPQFQGFHGS 134 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +ARS + D P+ + ++ Sbjct: 135 KEEVARSIGLHEEDIDETLPIVYGSTGVWTLL 166 >gi|292653723|ref|YP_003533621.1| proline racemase [Haloferax volcanii DS2] gi|291369717|gb|ADE01945.1| proline racemase [Haloferax volcanii DS2] Length = 353 Score = 40.1 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 20/225 (8%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQI--MLIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R T D + L + D + ++ D D + ++ G + CG+G Sbjct: 58 ERRDSFADTHDWVRDLLMREPRGHDDMFGAVVVDSDHPDADVGVFFMDSRG-YLDMCGHG 116 Query: 81 MRCVVRFLTSRMK---RKSFTFETIRGILVAK-----ENRDGSISV-DMGEPILDWKLIP 131 VV L + RK+ ET G++ A + +++ ++ + D +P Sbjct: 117 TIGVVSALLELDRLDRRKTIRVETPAGLVEATPEYVPDGGVECVTIQNVRSFVYDQATVP 176 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGNLLAKH 190 ++ + D + G L + + + HA FV+ L D + +++ H Sbjct: 177 VSFLDSSLRVDVVYAGNFFALVDSDQLGLPVEPQHAATFVDWGLEIRDAVNERLDIV--H 234 Query: 191 PMFSEGVNLSIARVTS-LESLD--LRTWERG-VGLTAACGSAACA 231 P+ E ++SI + + +D + + G V + CG+ CA Sbjct: 235 PLTGEEGSISITEIYGTPDEVDRSIVVFGEGQVDRSP-CGTGTCA 278 >gi|271970126|ref|YP_003344322.1| PhzF family phenazine biosynthesis protein [Streptosporangium roseum DSM 43021] gi|270513301|gb|ACZ91579.1| PhzF family phenazine biosynthesis protein [Streptosporangium roseum DSM 43021] Length = 262 Score = 40.1 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 35/220 (15%) Query: 73 EVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 EV CG+ L S ++ F T GIL + G IS+D +L + P Sbjct: 67 EVALCGHATLAAAHVLYSTGSAPETLEFSTKSGILSVTRDGTGLISMDFPAKVLQ-ETGP 125 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDL---ASFGN 185 + + +G + +L V +P + + D + AS Sbjct: 126 PDGLAAALGVEPVWVGKNDWDYLVEVDSEEAVRAASPDFLALEKVDARGTIVTAPASIPG 185 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + F+ V ++ + + + + +A K A Sbjct: 186 VDYVSRFFAPRVGVN------EDPV----------------TGSAHCALAPYWTGKLGLA 223 Query: 246 VSV----KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V GG + + V ++G A GKL + Sbjct: 224 SLVGAQLSQRGGVIHTTVR-GDRVELSGHAVTVLSGKLHV 262 >gi|215275650|sp|A0AZQ0|HYPRE_BURCH RecName: Full=4-hydroxyproline epimerase; AltName: Full=Hydroxyproline-2-epimerase; Short=HyPRE Length = 310 Score = 40.1 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ D A + N G CG+G VVR L Sbjct: 43 DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R++ ET G + A + D S+SV Sbjct: 102 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 131 >gi|145297978|ref|YP_001140819.1| phenazine biosynthesis PhzC/PhzF protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850750|gb|ABO89071.1| Phenazine biosynthesis PhzC/PhzF protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 295 Score = 40.1 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 34/222 (15%) Query: 73 EVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 EV CG+G L ++ FET G+L+A+ + I +D L + Sbjct: 95 EVDLCGHGTLAAAHVLWQTGEVAPQEVIRFETRSGVLLARREGE-WIQLDFPRIPLTPLV 153 Query: 130 IPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP--HAIFFVEDD--LYHYDLASF 183 + A + R G L L + V P HA+ + + + Sbjct: 154 LDPAYGAALGCTPRQTLAAGAKFLLELESEEEVRGLVPDFHALRALPGRGLMVTAPSSRA 213 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCLHKT 242 G+ F+ V GV GS CA V + L KT Sbjct: 214 GDDF-VSRYFAPWV--------------------GVDEDPVTGSNHCALVPFWAARLGKT 252 Query: 243 NRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + GG L++E + V M+G+A W+G+ + + Sbjct: 253 RLKARQISARGGELVLELQ-GDRVLMSGQALTLWQGEWLLPS 293 >gi|21243283|ref|NP_642865.1| hypothetical protein XAC2550 [Xanthomonas axonopodis pv. citri str. 306] gi|21108821|gb|AAM37401.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 312 Score = 40.1 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ +D S + N G CG+G VVR L Sbjct: 43 DHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + + DG++SVD Sbjct: 102 LGRIAPGQHRIETPVGTVGVELADDGTVSVD 132 >gi|167838848|ref|ZP_02465625.1| proline racemase, putative [Burkholderia thailandensis MSMB43] Length = 310 Score = 40.1 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 15/101 (14%) Query: 32 SDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGN 79 ++ + AL+ D + D ++ L+ + A A + N G CG+ Sbjct: 32 AERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGH 90 Query: 80 GMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118 G +VR L R+ ET G + A + D S+SV Sbjct: 91 GTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|157370082|ref|YP_001478071.1| proline racemase [Serratia proteamaculans 568] gi|157321846|gb|ABV40943.1| proline racemase [Serratia proteamaculans 568] Length = 315 Score = 40.1 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTFETIRGILVA 108 L+ A + N G CG+G + V ++ ET G + A Sbjct: 69 LLCQPCSPQAAAGVIFFNNSGYLG-MCGHGTIGLVASLAYLGKIGVGEHLIETPVGTVNA 127 Query: 109 KENRDGSISVD 119 ++DGS++V+ Sbjct: 128 TLHQDGSVTVE 138 >gi|212711967|ref|ZP_03320095.1| hypothetical protein PROVALCAL_03043 [Providencia alcalifaciens DSM 30120] gi|212685489|gb|EEB45017.1| hypothetical protein PROVALCAL_03043 [Providencia alcalifaciens DSM 30120] Length = 316 Score = 40.1 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILV 107 L+ + A + N +G CG+G +V +L R+ ET G + Sbjct: 67 LLCKPVNPKAAAGVIFFNNEGYLG-MCGHGTIGLVASLHYL-GRIGYGEHLIETPVGDVT 124 Query: 108 AKENRDGSISVD 119 AK + DGS+S+ Sbjct: 125 AKLHEDGSVSIQ 136 >gi|167722397|ref|ZP_02405633.1| proline racemase family protein [Burkholderia pseudomallei DM98] Length = 194 Score = 40.1 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + D ++ L+ + A A + N G CG+G +VR L Sbjct: 43 DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|108758190|ref|YP_634330.1| putative proline racemase [Myxococcus xanthus DK 1622] gi|108462070|gb|ABF87255.1| putative proline racemase [Myxococcus xanthus DK 1622] Length = 311 Score = 40.1 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR---F 87 DA + D ++ L+ AS A I N G CG+G VV+ + Sbjct: 43 DAFRKAIVCEPRGSDVMVGALLCPPVSASSVAGIIFFNNVGYLG-MCGHGTIGVVKTLEY 101 Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 L R+ + ET G++ A + DG +S+ P W Sbjct: 102 L-GRIGPGVHSLETPVGVVKATLHPDGRVSIA-NVPSYRWA 140 >gi|206576988|ref|YP_002240611.1| proline racemase family protein [Klebsiella pneumoniae 342] gi|206566046|gb|ACI07822.1| proline racemase family protein [Klebsiella pneumoniae 342] Length = 315 Score = 40.1 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + + D ++ L+ A+ A + N G + CG+G ++ L Sbjct: 49 DHWRQAAILEPRGNDVLVGALLCKPVSAAATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R++ ET G + A + DGS+SV K I + + + D Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165 Query: 149 VNHLFLRNPF 158 N FL N Sbjct: 166 GNWFFLINDH 175 >gi|126669065|ref|ZP_01739998.1| glyceraldehyde-3-phosphate dehydrogenase, putative [Marinobacter sp. ELB17] gi|126626467|gb|EAZ97131.1| glyceraldehyde-3-phosphate dehydrogenase, putative [Marinobacter sp. ELB17] Length = 556 Score = 40.1 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 29/119 (24%) Query: 93 KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152 R+S FET+ G++ +++ MG + P+N Sbjct: 172 DRRSSRFETVGGVVAQTRRLPVGVALCMGP----------------------YNYPLNET 209 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESL 210 F + MGN + F Y + G LL F GV ++I +++ Sbjct: 210 FTTLIPALIMGN--TVVFKP---AKYGVLLIGPLLEAFQKAFPAGV-INIIFGRGRDTI 262 >gi|78048304|ref|YP_364479.1| proline racemase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036734|emb|CAJ24427.1| proline racemase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 312 Score = 40.1 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ +D + N G CG+G VVR L Sbjct: 43 DHWRSAIACEPRGSDTMVGALLLPPRDPGACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + + DG++ VD Sbjct: 102 LGRIGPGQHRIETPVGTVGVELADDGTVWVD 132 >gi|88801192|ref|ZP_01116734.1| hypothetical protein MED297_07286 [Reinekea sp. MED297] gi|88776066|gb|EAR07299.1| hypothetical protein MED297_07286 [Reinekea sp. MED297] Length = 294 Score = 40.1 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 44/247 (17%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D D +T+ + ++ + N F + + Q D IRI SEV G Sbjct: 23 VVLDA----DRLTTAQMQQIAREFN--FSETTFVCAPQQGG-DYQIRIFTP-SSEVPFAG 74 Query: 79 N---GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 + G CV+ + F FE G + R G + ++ + + + Sbjct: 75 HPNIGTACVLAEHLDVVSGYCFQFEERAGRVPVTVRRTGKLWQ---AELVAPEPLQFGQV 131 Query: 136 FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL------- 186 D V+ L L +P + S+G P FV +L +D + Sbjct: 132 HDPALIAEVLSLSVDDLALQTHSPQITSVGLP----FVMVELKTHDALQRARVNTQALDR 187 Query: 187 ---LAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSAACASVVASG 237 + +P L + T+ + +D+RT R GV A GSA CA Sbjct: 188 LLAIEPNPF------LHLYVKTADDEVDVRT--RMFAPTDGVPEDPATGSANCALAAMLA 239 Query: 238 CLHKTNR 244 + Sbjct: 240 QYDAADE 246 >gi|170702821|ref|ZP_02893672.1| proline racemase [Burkholderia ambifaria IOP40-10] gi|170132273|gb|EDT00750.1| proline racemase [Burkholderia ambifaria IOP40-10] Length = 311 Score = 40.1 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ A + N G CG+G VVR L Sbjct: 44 DRYRTACILEPRGSDVMVGALLCQPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R++ ET G + A + D S+SV Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|325925080|ref|ZP_08186500.1| proline racemase [Xanthomonas perforans 91-118] gi|325544496|gb|EGD15859.1| proline racemase [Xanthomonas perforans 91-118] Length = 312 Score = 39.7 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ +D + N G CG+G VVR L Sbjct: 43 DHWRSAIACEPRGSDTMVGALLLPPRDPGACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + + DG++ VD Sbjct: 102 LGRIGPGQHRIETPVGTVGVELADDGTVWVD 132 >gi|308481157|ref|XP_003102784.1| hypothetical protein CRE_29948 [Caenorhabditis remanei] gi|308260870|gb|EFP04823.1| hypothetical protein CRE_29948 [Caenorhabditis remanei] Length = 321 Score = 39.7 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 ++R SEV CG+ L + + K FET GIL + + G++ ++ Sbjct: 66 FYLRWFTPT-SEVPLCGHATLATSHVLFNEIGNLNKELKFETQTGILAVRRDESGNVELN 124 Query: 120 MGEPILDWKLIPLARSFDKM 139 + P D I + + + Sbjct: 125 L--PEYDLTSIKFHHTTNPL 142 >gi|170757131|ref|YP_001780459.1| PhzF family phenazine biosynthesis protein [Clostridium botulinum B1 str. Okra] gi|169122343|gb|ACA46179.1| phenazine biosynthesis protein PhzF family [Clostridium botulinum B1 str. Okra] Length = 289 Score = 39.7 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 17/147 (11%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +VI+ D+++ D + ++ F + + + A D +R + EV CG Sbjct: 23 VVINA----DDLSEDNMKKVAGI--IGFSETAFVMNSDLA--DFKVRFFTPN-EEVDICG 73 Query: 79 NG-MRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 + + L R++ + ET G+L + D SI ++ P + Sbjct: 74 HATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETI------C 127 Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMG 163 + D +I +VS G Sbjct: 128 KQEIADSLNITTAEMSEELPIQIVSTG 154 >gi|115358300|ref|YP_775438.1| proline racemase [Burkholderia ambifaria AMMD] gi|115283588|gb|ABI89104.1| proline racemase [Burkholderia ambifaria AMMD] Length = 311 Score = 39.7 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 36 NALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSR 91 + D ++ L+ + A + N G CG+G VVR L R Sbjct: 47 RTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHHMGR 105 Query: 92 MKRKSFTFETIRGILVAKENRDGSISV 118 ++ ET G + A + D S+SV Sbjct: 106 IEPGVHRIETPVGTVEATLHDDLSVSV 132 >gi|42782484|ref|NP_979731.1| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC 10987] gi|42738410|gb|AAS42339.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus ATCC 10987] Length = 299 Score = 39.7 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|317407800|gb|EFV87727.1| proline racemase [Achromobacter xylosoxidans C54] Length = 337 Score = 39.7 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 15/129 (11%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG+E C Sbjct: 34 ILEKRAFLEQHYDWLRKALMREPRGHKDMFGVFLTPPSSPEYDAGLIYI--DGTEYSHMC 91 Query: 78 GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126 G+G V + + FET G++V++ +G + + Sbjct: 92 GHGTIAVSMAMVANGLVPRGQDGITRIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151 Query: 127 WKLIPLARS 135 + IP+ Sbjct: 152 AQDIPVELP 160 >gi|126641371|ref|YP_001084355.1| hypothetical protein A1S_1325 [Acinetobacter baumannii ATCC 17978] Length = 280 Score = 39.7 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 60/213 (28%), Gaps = 41/213 (19%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108 L+ + A + N G CG+G +V L K + T ET G + A Sbjct: 33 LLCKPVNPKASAGVIFFNNTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEA 91 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + D S+SV + +P R ++ D G V + N H Sbjct: 92 TLHEDHSVSV---------RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQ 142 Query: 169 FFVEDDLYHYDLASF---------------GNLLAKHPMFSEGVNL---SIARVTSLESL 210 D+L ++ G + +F+ + Sbjct: 143 RVASDNLDQLTEYAWTVRQALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA-- 200 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 ++R CG+ A + K Sbjct: 201 ----YDRSP-----CGTGTSAKIACLAADGKLE 224 >gi|319796572|ref|YP_004158212.1| 4-hydroxyproline epimerase [Variovorax paradoxus EPS] gi|315599035|gb|ADU40101.1| 4-hydroxyproline epimerase [Variovorax paradoxus EPS] Length = 311 Score = 39.7 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D A + + D ++ L+ + A + N G CG+G +V L Sbjct: 43 DKWRAATVLEPRGSDVVVGALLCEPVSPDAAAGVIFFNNAGYLG-MCGHGTIGLVASLAH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + + DGS+SV Sbjct: 102 MGRIGVGEHRIETPVGTVTTTLHADGSVSV 131 >gi|238023840|ref|YP_002908072.1| putative proline racemase [Burkholderia glumae BGR1] gi|237878505|gb|ACR30837.1| Putative proline racemase [Burkholderia glumae BGR1] Length = 321 Score = 39.7 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80 R D A + D ++ L+ + D S A + N G CG+G Sbjct: 33 ERLERLRRDHDDWRAAVVTEPRGSDVMVGALLCESDDPSCAAGVIFFNNVGYLG-MCGHG 91 Query: 81 MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118 +V L R+ ET GI+ A N DGS+SV Sbjct: 92 TIGLVVSLAHLGRIGPGVHRIETPVGIVEATLNPDGSVSV 131 >gi|193077004|gb|ABO11753.2| hypothetical protein A1S_1325 [Acinetobacter baumannii ATCC 17978] Length = 310 Score = 39.7 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 72/255 (28%), Gaps = 51/255 (20%) Query: 13 GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68 G G DM ++ D + + D ++ L+ + A + N Sbjct: 27 GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126 G CG+G +V L K + T ET G + A + D S+SV Sbjct: 81 NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183 + +P R ++ D G V + N H D+L ++ Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVR 190 Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228 G + +F+ + ++R CG+ Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239 Query: 229 ACASVVASGCLHKTN 243 A + K Sbjct: 240 TSAKIACLAADGKLE 254 >gi|255023006|ref|ZP_05294992.1| phenazine biosynthesis protein, PhzF family [Listeria monocytogenes FSL J1-208] Length = 282 Score = 39.7 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 9/82 (10%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111 + D + EV CG+ + F +++ + +T ET G+L Sbjct: 52 ESNCADFKLEYFTP-KEEVALCGHAT--IGTFAILKHVNKIHKNRYTIETNSGVLTITI- 107 Query: 112 RDGSISVDMGEPILDWKLIPLA 133 +DG+I ++ +P + +IP A Sbjct: 108 KDGTIFMEQNQPTF-YDIIPPA 128 >gi|229070860|ref|ZP_04204088.1| Phenazine biosynthesis protein PhzF [Bacillus cereus F65185] gi|229080623|ref|ZP_04213143.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock4-2] gi|228702724|gb|EEL55190.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock4-2] gi|228712250|gb|EEL64197.1| Phenazine biosynthesis protein PhzF [Bacillus cereus F65185] Length = 299 Score = 39.7 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGSIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSTEELAHSIGLEINDLDVSLPIVYGSTGNWTVI 166 >gi|187919272|ref|YP_001888303.1| proline racemase [Burkholderia phytofirmans PsJN] gi|187717710|gb|ACD18933.1| proline racemase [Burkholderia phytofirmans PsJN] Length = 341 Score = 39.7 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99 D ++ L+ + D + A + N G CG+G +V L R+ Sbjct: 80 RGSDVVVGALLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIGAGRHRI 138 Query: 100 ETIRGILVAKENRDGSISV 118 ET GI+ A N DGS++V Sbjct: 139 ETPVGIVEATLNDDGSVAV 157 >gi|228922131|ref|ZP_04085441.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837547|gb|EEM82878.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 39.7 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA+S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAQSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|332638649|ref|ZP_08417512.1| PhzF family phenazine biosynthesis protein [Weissella cibaria KACC 11862] Length = 281 Score = 39.7 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 22/126 (17%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKR---KSFTFETIRGILVAKE 110 D SEV CG+ + F L + + +T ET GI+ + Sbjct: 51 SGSDQADFKFEYYTPT-SEVDLCGHAT--IASFTLMRELGKVVPNQYTIETKAGIIPIEV 107 Query: 111 NRDGSISVDMG-----------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + M +P L + I ++ D D G + L N Sbjct: 108 QPK---RIFMNQQPSEFFEKIEKPELS-EAIDISAVNDNFDIQVVSKGGKDILVPVNINE 163 Query: 160 VSMGNP 165 ++ NP Sbjct: 164 LNALNP 169 >gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis] Length = 489 Score = 39.7 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 74/251 (29%), Gaps = 54/251 (21%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKE--------- 110 +R +EV+ CG+ F + F+T+ GIL AK+ Sbjct: 258 FRLRWFTP-VAEVKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDV 316 Query: 111 ------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNP 157 + +++ P + L+ F+ +D I + + Sbjct: 317 SSIQNGEANELFLIELNFPTV------LSTEFNSVDLAPISKALNGASIIDIRRTTTADD 370 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 V + + A+ ++ L G + + + R Sbjct: 371 LFVVLPSAKAVSELQPQFDDI-LKCPGRGIIVSGVAPPESGFDF-------------YSR 416 Query: 218 ------GVGLTAACGSAACASV-VASGCLHKTN-RAVSVKMLGGGLLIEWHD-NNHVFMT 268 G+ CGSA CA L K + A G L I + N V + Sbjct: 417 FFCPKYGINEDPVCGSAHCALAPYWGKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLR 476 Query: 269 GEAKKEWEGKL 279 G+A EG L Sbjct: 477 GKAVTVMEGSL 487 >gi|289661711|ref|ZP_06483292.1| proline racemase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 312 Score = 39.7 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 7/104 (6%) Query: 22 DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77 D+ C + S D + + D ++ L+ ++ N G C Sbjct: 30 DLAQCRERFRSEFDQWRSAIACEPRGSDTMVGALLLPPREPGACTGAIFFNNVGYLG-MC 88 Query: 78 GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 G+G VVR L R+ ET G + + DG++SVD Sbjct: 89 GHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132 >gi|323496470|ref|ZP_08101528.1| putative epimerase [Vibrio sinaloensis DSM 21326] gi|323318747|gb|EGA71700.1| putative epimerase [Vibrio sinaloensis DSM 21326] Length = 266 Score = 39.7 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 218 GVGLTAACGSAACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 GV GSA CA A+ T A GG +++ V ++G A Sbjct: 201 GVNEDPVTGSAHCALAPYWAAKLRRSTINAYQASNRGGEVMMTLQQGGRVTLSGSAVTVI 260 Query: 276 EGKLDI 281 G + + Sbjct: 261 RGNISV 266 >gi|285018733|ref|YP_003376444.1| proline racemase [Xanthomonas albilineans GPE PC73] gi|283473951|emb|CBA16452.1| probable proline racemase protein [Xanthomonas albilineans] Length = 313 Score = 39.7 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ D + A + N G CG+G +VR L Sbjct: 43 DRWRSAIACEPRGSDTMVGALLLPPLDPAACAAVIFFNNVGYLG-MCGHGTIGLVRTLVD 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ + ET G + + DG +SVD Sbjct: 102 LGRLAPGAHRIETPVGTVGVALHDDGRVSVD 132 >gi|307325683|ref|ZP_07604884.1| phenazine biosynthesis protein PhzF family [Streptomyces violaceusniger Tu 4113] gi|306888811|gb|EFN19796.1| phenazine biosynthesis protein PhzF family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 39.7 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 38/241 (15%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 + A D +R +E CG+ L + + F T+ G+L A + Sbjct: 54 PEAAEADWALRWFTP-VTEAPMCGHATLATTHVLKTTGAATGTVRFATLSGVLSATADDG 112 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GSI++D P +P+ + ++ G + + PH + + Sbjct: 113 GSITLDF--PTAALTALPVPQQTAEV------AGALGAEIVSAHHA----GPHIDDLLIE 160 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT-----AACG-- 226 + + LA S + A RG A G Sbjct: 161 LADEKTVRALAPDLAALKRISHRGVIVTAAAEDPT--------RGYDFVSRMFAPAVGID 212 Query: 227 ----SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + + + +A + R + V G L+ + +TG A +G+ Sbjct: 213 EDPVTGSAHTALAPYWSARFGRDELTGLQVSARSG-LVRTVLRGDRTLLTGGAVTVIDGE 271 Query: 279 L 279 L Sbjct: 272 L 272 >gi|323483166|ref|ZP_08088557.1| hypothetical protein HMPREF9474_00306 [Clostridium symbiosum WAL-14163] gi|323691393|ref|ZP_08105667.1| hypothetical protein HMPREF9475_00529 [Clostridium symbiosum WAL-14673] gi|323403439|gb|EGA95746.1| hypothetical protein HMPREF9474_00306 [Clostridium symbiosum WAL-14163] gi|323504536|gb|EGB20324.1| hypothetical protein HMPREF9475_00529 [Clostridium symbiosum WAL-14673] Length = 278 Score = 39.7 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 45/258 (17%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + + A+ +++ + +Q + + + ++ + CGN R Sbjct: 23 EVPPELYAAVGAAILKEEDLNAEQAGFLLKPLRGAA-GRMEMM-----GGEFCGNASRSF 76 Query: 85 VRFLTSRMK---RKSFTFETIRG--ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139 L R + E IL DGS V M P + I ++ Sbjct: 77 GLLLGRRNGMKAGERIPVEVSGSKDILEVLLEEDGSW-VSMPLP----QAITELSLPEEC 131 Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIF------------FVEDDLYHYDLASFGNL- 186 RD LR P VV G H I ++ D+ + G + Sbjct: 132 GRDSGISSSDGSGLLRFPAVVLEGITHVILEDVEPSETLAHAVLDKMAKETDVDAAGAIF 191 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV-ASGCLHKTNRA 245 + M + V + +S WE ++CGS AS V + + Sbjct: 192 IKDGEMTP------VVWVRATDSF---IWE------SSCGSGTLASTVWLGRDVADGDFR 236 Query: 246 VSVKMLGGGLLIEWHDNN 263 + +K GG L E+ N Sbjct: 237 LELKQPGGILKAEFTAKN 254 >gi|260789391|ref|XP_002589730.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae] gi|229274912|gb|EEN45741.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae] Length = 293 Score = 39.7 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 78/245 (31%), Gaps = 30/245 (12%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGM--RCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 +R E+ CG+ F TF T G L AK D Sbjct: 59 STGSRFGLRWFTPT-KEIDLCGHATLASAAALFYIMDNPSPQLTFLTRSGELFAKRQGD- 116 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 IS+D+ + +P + + R I + S+G + + DD Sbjct: 117 YISLDL------PENVPEPQDREAYSRLLRAIVGTT-PVQEVRYCSSVGGDLLV-RLADD 168 Query: 175 LYHYDLASF----GNLLAKH-PMFSEGVNLSI-----ARVTSLESLDLRTWER------G 218 L S G ++A H GV +++ + + R G Sbjct: 169 TTRSTLESLSPDVGAMMAAHTEGKLRGVAVTVKGSPSNGCVNDNGVKYDFISRFFSPWYG 228 Query: 219 VGLTAACGSA-ACASVVASGCLHKTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V CGSA + + L KT+ V GG L + + V + G+A Sbjct: 229 VAEDPVCGSAHTVLASYWAKELGKTDFYVRQCSPRGGDLKVWLRGDGRVEVAGKATVVLN 288 Query: 277 GKLDI 281 GK+ I Sbjct: 289 GKIKI 293 >gi|289668666|ref|ZP_06489741.1| proline racemase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 312 Score = 39.3 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ ++ N G CG+G VVR L Sbjct: 43 DQWRSAIACEPRGSDTMVGALLLPPREPGACTGAIFFNNVGYLG-MCGHGTIGVVRTLAE 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + + DG++SVD Sbjct: 102 LGRIAPGQHRIETPVGTVGVELADDGTVSVD 132 >gi|242243431|ref|ZP_04797876.1| diaminopimelate epimerase [Staphylococcus epidermidis W23144] gi|242233051|gb|EES35363.1| diaminopimelate epimerase [Staphylococcus epidermidis W23144] Length = 242 Score = 39.3 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 49/261 (18%) Query: 42 DNTHFDQIMLIHDFQDASVD-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---- 96 + +Q+ I + D + + S + CGN + +L R+ + Sbjct: 4 THVCCEQVGFIESVNYENGDNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQ 58 Query: 97 FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 + K + V M K+ + F K+ +F +++ + Sbjct: 59 LRVSGCSHPVECKVHSQH-YEVTM------PKVHQVKERFVKLGDQQFKAFEISYDTYIH 111 Query: 157 PFVVSMGNPHAIF-----FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLE 208 ++ G A+ FV +H + G +L + ++ + + + Sbjct: 112 YVLMCDGVDLAMKQRVEDFVSAQTWHQQFKTIGVMLFQQDKQFIYP------LIHIPKIG 165 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN-- 263 SL WE +CGS A + V + T+ + V GG +++ + Sbjct: 166 SL---IWE------NSCGSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSEQN 214 Query: 264 --HVFMTGEAKKEWEGKLDIK 282 + G+ G+ I+ Sbjct: 215 EYQTTIKGQVSTVATGQAYIE 235 >gi|68473476|ref|XP_719296.1| hypothetical protein CaO19.13065 [Candida albicans SC5314] gi|46441108|gb|EAL00408.1| hypothetical protein CaO19.13065 [Candida albicans SC5314] Length = 302 Score = 39.3 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 102/317 (32%), Gaps = 67/317 (21%) Query: 8 FA--KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +GN + VI DN+T+ + ++ N + I + + D IR Sbjct: 10 FTNVKY--LGNPVAVIYD---SDNLTTQEMQKIARWTN--LSETTFILTPKSSIADYSIR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124 I G+E+ G+ L K K G ++ +E G + + + + P Sbjct: 63 IFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQII-QECGAGLVKISVEKTPN 117 Query: 125 LDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + +P SF DK+ + H ++ + P ++ G A+F + Sbjct: 118 NNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGK-PVLIDAGPKWAVFQLGS 176 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLR-----TWERGVGLTAACG 226 DL + + + + + + + +S++LR GV ACG Sbjct: 177 GKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV---GVAEDPACG 233 Query: 227 SAACAS-VVASGCLHKTNRAVSVK---------------------MLGGGLLIEWHDNNH 264 S + A + + ++ G L I Sbjct: 234 SGSGAIGAYLANHVFNEKEKFTIDISQGKPIERGAKIQVKVNRLSTKNGDLSIHVG---- 289 Query: 265 VFMTGEAKKEWEGKLDI 281 G A +EG I Sbjct: 290 ----GHAITCFEGTYSI 302 >gi|52784670|ref|YP_090499.1| YfhB [Bacillus licheniformis ATCC 14580] gi|163119302|ref|YP_078094.2| phenazine biosynthesis-like protein [Bacillus licheniformis ATCC 14580] gi|319646912|ref|ZP_08001140.1| YfhB protein [Bacillus sp. BT1B_CT2] gi|52347172|gb|AAU39806.1| YfhB [Bacillus licheniformis ATCC 14580] gi|145902808|gb|AAU22456.2| Phenazine biosynthesis-like protein [Bacillus licheniformis ATCC 14580] gi|317390971|gb|EFV71770.1| YfhB protein [Bacillus sp. BT1B_CT2] Length = 298 Score = 39.3 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 11/115 (9%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENR 112 S D IR G E+ CG+ + L + + ET G+L Sbjct: 53 PSESADIRIRYFTP-GHEMNLCGHATVASLYALLEKGAIEAGAELKVETKAGVLSVYTAS 111 Query: 113 DG----SISVDMGEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 DG ++++ P LA + + D PV + ++ Sbjct: 112 DGNRRFLVTLEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGSTGIWTLL 166 >gi|268589765|ref|ZP_06123986.1| putative epimerase [Providencia rettgeri DSM 1131] gi|291314920|gb|EFE55373.1| putative epimerase [Providencia rettgeri DSM 1131] Length = 316 Score = 39.3 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILV 107 L+ Q+ + A + N G CG+G +V FL K ET G + Sbjct: 67 LLCKPQNPAATAGVIFFNNQGYLG-MCGHGTIGLVASLHFLGHITYGKHL-IETPVGDVT 124 Query: 108 AKENRDGSISVD 119 A+ ++DGS+S+ Sbjct: 125 AQLHQDGSVSIQ 136 >gi|229179696|ref|ZP_04307046.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 172560W] gi|228603802|gb|EEK61273.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 172560W] Length = 299 Score = 39.3 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E++ CG+G + L + ++ + ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMELCGHGTVGTIYALREKGLLEEKSNLMIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|310764785|gb|ADP09735.1| Proline racemase family protein [Erwinia sp. Ejp617] Length = 279 Score = 39.3 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106 L+ A + N G CG+G R + ++ ET G + Sbjct: 33 LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 89 Query: 107 VAKENRDGSISV 118 +A ++D S+SV Sbjct: 90 LAVLHQDLSVSV 101 >gi|206968766|ref|ZP_03229721.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH1134] gi|229151595|ref|ZP_04279797.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1550] gi|206735807|gb|EDZ52965.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH1134] gi|228631839|gb|EEK88466.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1550] Length = 299 Score = 39.3 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E++ CG+G + L + ++ + ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMELCGHGTVGTIYALREKGLLEEKSNLMIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|75910564|ref|YP_324860.1| phenazine biosynthesis PhzC/PhzF protein [Anabaena variabilis ATCC 29413] gi|75704289|gb|ABA23965.1| Phenazine biosynthesis PhzC/PhzF protein [Anabaena variabilis ATCC 29413] Length = 264 Score = 39.3 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + A +AS + + GG + + + + VF+ G+A G+L Sbjct: 207 TGAAHCCLASYWRDRLGKDEFLAYQASSRGGVVKVSYGGGDRVFLAGQAVTVLRGEL 263 >gi|259907707|ref|YP_002648063.1| Proline racemase [Erwinia pyrifoliae Ep1/96] gi|224963329|emb|CAX54814.1| Proline racemase [Erwinia pyrifoliae Ep1/96] Length = 279 Score = 39.3 bits (91), Expect = 0.66, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106 L+ A + N G CG+G R + ++ ET G + Sbjct: 33 LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 89 Query: 107 VAKENRDGSISV 118 +A ++D S+SV Sbjct: 90 LAVLHQDLSVSV 101 >gi|218231126|ref|YP_002368125.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264] gi|218159083|gb|ACK59075.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264] Length = 299 Score = 39.3 bits (91), Expect = 0.66, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + T ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|126463923|ref|YP_001045036.1| proline racemase [Rhodobacter sphaeroides ATCC 17029] gi|126105734|gb|ABN78264.1| proline racemase [Rhodobacter sphaeroides ATCC 17029] Length = 337 Score = 39.3 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 12/107 (11%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +++ R + AL + H D + + DA + I DG E C Sbjct: 34 ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91 Query: 78 GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKE-NRDGSI 116 G+G V FET G++VA+ + D + Sbjct: 92 GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEDDRV 138 >gi|290561347|gb|ADD38074.1| Phenazine biosynthesis-like domain-containing protein [Lepeophtheirus salmonis] Length = 242 Score = 39.3 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 19/114 (16%) Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 GNP A+ ++ D+ + + + + VN S +R W Sbjct: 19 GNPAAVVLLKSDIEDSFKQKIASEIKLSETAFVLCKNVN-DFV---SENEFYIR-W---- 69 Query: 220 GLTAA-----CGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFM 267 T + CG A AS K +S + +GG L +E ++ ++ M Sbjct: 70 -FTPSNEVPLCGHATLASAAVLFYRKKNKNKLSFETMGGDELHVELENDGYISM 122 >gi|154252581|ref|YP_001413405.1| PhzF family phenazine biosynthesis protein [Parvibaculum lavamentivorans DS-1] gi|154156531|gb|ABS63748.1| phenazine biosynthesis protein PhzF family [Parvibaculum lavamentivorans DS-1] Length = 263 Score = 39.3 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 20/135 (14%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG 114 +R EV CG+ L + + + FET G LV K D Sbjct: 52 SEGEGYRLRWFTPT-VEVDLCGHATLASAHVLFTHLGYAKPEIRFETRSGTLVVKREGD- 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + M P K +P ++ +G L+L+ ++ A+F DD Sbjct: 110 --RLAMDFPAAKPKPLPAPNGIAEV------LGAKPLLWLKTSNLM------AVFDSADD 155 Query: 175 LYHY--DLASFGNLL 187 + D + G LL Sbjct: 156 VAALKPDFPALGRLL 170 >gi|322369934|ref|ZP_08044496.1| phenazine biosynthesis protein PhzF family [Haladaptatus paucihalophilus DX253] gi|320550270|gb|EFW91922.1| phenazine biosynthesis protein PhzF family [Haladaptatus paucihalophilus DX253] Length = 307 Score = 39.3 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 15/150 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D++T+D + A++ + + + + D +R +E+ CG+ V Sbjct: 29 DDLTADQMQAIARELSVSETAFFV----ESEDADRRVRFFTPT-TEIDLCGHAT--VASH 81 Query: 88 LT----SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDR 143 + R++ + ET G+L + DG++ + +P ++ I R + D Sbjct: 82 VHLLEDDRIEPGTHALETNVGVLDIEVETDGTVWMTQDDPDVEPVDIEYERLGAALGIDP 141 Query: 144 FHIGPVNHLFLRNPFVV-SMGNPHAIFFVE 172 + V P V S G P I V Sbjct: 142 AALRDVGEDL---PLAVSSTGLPILIVPVN 168 >gi|298241672|ref|ZP_06965479.1| 4-hydroxyproline epimerase [Ktedonobacter racemifer DSM 44963] gi|297554726|gb|EFH88590.1| 4-hydroxyproline epimerase [Ktedonobacter racemifer DSM 44963] Length = 316 Score = 39.3 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99 D ++ L+ D A + N S + CG+G +V L R++ Sbjct: 55 RGSDVLVGALLCQPVDPRCSAGVIYFNN-VSYLGMCGHGTIGLVATLAHLGRIQPGRHLI 113 Query: 100 ETIRGILVAKENRDGSISV 118 ET GI+ + + DG ++V Sbjct: 114 ETPVGIVTTELHEDGRVTV 132 >gi|172062263|ref|YP_001809914.1| proline racemase [Burkholderia ambifaria MC40-6] gi|171994780|gb|ACB65698.1| proline racemase [Burkholderia ambifaria MC40-6] Length = 348 Score = 39.3 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 44/271 (16%) Query: 26 CHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRC 83 H N D++ L + Q+ L+ A ++ D + G+ C Sbjct: 39 NHINEIDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAQAGFIVLQADKAHP-MSGSNCIC 97 Query: 84 VVRFLTSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLA 133 VV L + +T G++ A+ RDG +S+DM ++ + + Sbjct: 98 VVTALLELGMVPMQEPETTVVLDTPAGLVTARAACRDGRCVGVSLDMVPSFVEHLDVDVH 157 Query: 134 RSFDKMDRDRFHIGPVNHLFL---RNPFVVSMGNP-----HAIFFVEDDLYHYDLASFGN 185 + + G V + + + ++ GN H + E + Sbjct: 158 TAEFGTIKADIAFGGVYYALVDVDQIGLDIAPGNARQLATHGVRLKEIINRQVAV----- 212 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAACASVVASG 237 +HP++ E +N +A V +D ++ R V + CG+ + A++ Sbjct: 213 ---QHPLYPE-IN-EVAYVMFRNRVDDTVYQTCTTLPPGR-VDRSP-CGTGSSANLATLA 265 Query: 238 CLHKT---NRAVSVKMLGGGLLIEWHDNNHV 265 + +R S +GG +E V Sbjct: 266 ARGRVQVGDRLTSRSTIGGEFRVELLGTTEV 296 >gi|92114823|ref|YP_574751.1| proline racemase [Chromohalobacter salexigens DSM 3043] gi|91797913|gb|ABE60052.1| proline racemase [Chromohalobacter salexigens DSM 3043] Length = 311 Score = 39.3 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%) Query: 22 DMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGN 79 D R H DA + D ++ L + + + N G CG+ Sbjct: 37 DFRDNH-----DAWRRAIMLEPRGHDVLVGALYCAPESSDASCGVIFFNNSGYLG-MCGH 90 Query: 80 GMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV 118 G +V L + +T G + A + DG+++V Sbjct: 91 GTIGLVASLHHLGQLTPGCHKIDTPAGPVSATLHDDGAVTV 131 >gi|206975520|ref|ZP_03236433.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus H3081.97] gi|206746422|gb|EDZ57816.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus H3081.97] Length = 299 Score = 39.3 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV----AK 109 D +R G E+ CG+G + L + + + T ET GIL K Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIETKAGILPIQIGVK 112 Query: 110 ENRDGSISVDMGEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 EN + I + P LA S D P+ + N V+ Sbjct: 113 ENGEAFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|304408425|ref|ZP_07390071.1| phenazine biosynthesis protein PhzF family [Paenibacillus curdlanolyticus YK9] gi|304342610|gb|EFM08458.1| phenazine biosynthesis protein PhzF family [Paenibacillus curdlanolyticus YK9] Length = 293 Score = 39.3 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 26/182 (14%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ +++T + + ++ F++ D IR G E+ CG Sbjct: 24 VVLNG----EHLTEEQMLQVAAA--VGFNETAF--PLPSDRADWRIRFFTP-GHEISLCG 74 Query: 79 NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 + + L +R + T ET GIL + + G I + P S Sbjct: 75 HATMATIYALKTRGLLGDLTTLTIETKAGILSIQLDEREE-----GLFITMQQAAPQFAS 129 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 F+ + ++ + V S G I V+ LA+ + ++ + Sbjct: 130 FNGSIAQLAYAMGIDQEDIATELPVVYGSTGTWTLIIPVKG------LAACERMKPRNEL 183 Query: 193 FS 194 F Sbjct: 184 FP 185 >gi|126348589|emb|CAJ90313.1| putative phenazine biosynthesis protein [Streptomyces ambofaciens ATCC 23877] Length = 269 Score = 39.0 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 + D +R +EV CG+ L + + F T G+LVA D Sbjct: 52 PEGGEADWALRWFTP-VTEVSLCGHATLAAAHVLHTTGAHEGPVRFATRGGVLVATPRED 110 Query: 114 GSISVDMGEPILDWKLIPLA 133 GSI++D L P Sbjct: 111 GSITLDFPTAPLTPVEPPTG 130 >gi|283477561|emb|CAY73477.1| Proline racemase family protein [Erwinia pyrifoliae DSM 12163] Length = 309 Score = 39.0 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106 L+ A + N G CG+G R + ++ ET G + Sbjct: 63 LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119 Query: 107 VAKENRDGSISV 118 +A ++D S+SV Sbjct: 120 LAVLHQDLSVSV 131 >gi|209522196|ref|ZP_03270836.1| proline racemase [Burkholderia sp. H160] gi|209497369|gb|EDZ97584.1| proline racemase [Burkholderia sp. H160] Length = 322 Score = 39.0 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99 D ++ L+ + D + A + N G CG+G +V L R+ Sbjct: 57 RGSDVVVGALLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIGPGRHRI 115 Query: 100 ETIRGILVAKENRDGSISV 118 ET G++ A N DGS++V Sbjct: 116 ETPVGVVEATLNEDGSVAV 134 >gi|326780616|ref|ZP_08239881.1| phenazine biosynthesis protein PhzF family [Streptomyces cf. griseus XylebKG-1] gi|326660949|gb|EGE45795.1| phenazine biosynthesis protein PhzF family [Streptomyces cf. griseus XylebKG-1] Length = 273 Score = 39.0 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 3/100 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 + D +R +EV CG+ L + + F GIL A + D Sbjct: 54 PPGGTADWALRWFTP-ATEVDMCGHATLAAAHVLHTTDLATGPVRFAARCGILTATAHPD 112 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 GS+++D L + +P + D + D + Sbjct: 113 GSLTLDFPTSPLTEEPVPYGLA-DALGADPVSVHDTGEHI 151 >gi|307544144|ref|YP_003896623.1| proline racemase [Halomonas elongata DSM 2581] gi|307216168|emb|CBV41438.1| proline racemase [Halomonas elongata DSM 2581] Length = 312 Score = 39.0 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + D ++ L+ + + + N G CG+G +V L Sbjct: 43 DRWRTACMLEPRGHDVLVGALLCEPETPEATCGVIFFNNSGYLG-MCGHGTIGLVASLAH 101 Query: 91 RMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 + +T G + A+ + DGS++V + +PL Sbjct: 102 HGRLAPGLHHIDTPVGAIEAQLHEDGSVTVRNVPAYRYRRAVPLEVP 148 >gi|282866494|ref|ZP_06275538.1| phenazine biosynthesis protein PhzF family [Streptomyces sp. ACTE] gi|282558706|gb|EFB64264.1| phenazine biosynthesis protein PhzF family [Streptomyces sp. ACTE] Length = 293 Score = 39.0 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 81/303 (26%) Query: 20 VIDM-RGCHDNITSDAINALSTDDNTHFDQI------------MLIHD-FQDASVDAFIR 65 ++D + L +D D++ H D +R Sbjct: 25 IVDAFTDRPFAGNPAGVLLLESDRFPGPDRLQRVAAEVNLSETAFAHPLPPGGQADWALR 84 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 +EV CG+ L + + + F + G+L ++DGS+++D Sbjct: 85 WFTPT-TEVDLCGHATLAAAHVLRTTGVAEGTVRFASRSGVLRTTAHQDGSLTLDFPTAP 143 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L P + + + + ++G+ +LA Sbjct: 144 LTPVTAPPGLA-EALGAVPLSVHDTGD---------NVGD-----------LLVELADEA 182 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG------------------ 226 + A P F V S RGV TAA G Sbjct: 183 AVRALRPDFPSLV------ACSR---------RGVIATAAAGDPSDGYDFVSRGFFPRVG 227 Query: 227 ------SAACASVVA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + + + +A S +T+ + G + ++TG+A E Sbjct: 228 IDEDPVTGSAHTALAPFWSARFGRTDLTGLQASARSGLVRTSLR-GERTWLTGQAVTVIE 286 Query: 277 GKL 279 G+L Sbjct: 287 GEL 289 >gi|229491382|ref|ZP_04385206.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus erythropolis SK121] gi|229321667|gb|EEN87464.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus erythropolis SK121] Length = 329 Score = 39.0 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 37/281 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD-AFIRIINCDGSEVQSC 77 +V+D RG D+ + + LI + + IR + +EV C Sbjct: 65 VVLDARGLDDSELQSVAAEIGYAETA-----FLIEPALGGNPRHSRIRYFSPI-AEVPFC 118 Query: 78 GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 G+ LT R +FTFET G + D + ++ + P+ + Sbjct: 119 GHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGTSTATFTSVEPSVSPIDHAVL 178 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 + + GN H I V D +D +F + M ++G Sbjct: 179 TALLGLIGVDSSALDARYPAMLSYAGNTHPIV-VLRDQSTFDEFTFDPSAMRTLMDAQGW 237 Query: 198 --NLSIARVTSLESLDLR-------TWERGVGLTAACGSAACASVVASGCLHK----TNR 244 ++I + + R E + + A+ T R Sbjct: 238 AGTVTILHPLDDNTFEARNLFPVGNIVEDPA-------TGSAAASTGGYLRKLEPAATPR 290 Query: 245 AVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278 +++ G L +E + + +TG A +G+ Sbjct: 291 RITIHQ--GRHVGRPSVLAVEIPVDGGISVTGTAVPVVDGQ 329 >gi|312173214|emb|CBX81469.1| Proline racemase [Erwinia amylovora ATCC BAA-2158] Length = 309 Score = 39.0 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106 L+ A + N G CG+G R + ++ ET G + Sbjct: 63 LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119 Query: 107 VAKENRDGSISV 118 +A ++D ++SV Sbjct: 120 LAVLHQDLTVSV 131 >gi|307727295|ref|YP_003910508.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1003] gi|307587820|gb|ADN61217.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1003] Length = 318 Score = 39.0 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99 D ++ L+ + D S A + N G CG+G +V L R+ Sbjct: 57 RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115 Query: 100 ETIRGILVAKENRDGSISV 118 ET G++ A N DGS++V Sbjct: 116 ETPVGVVEATLNEDGSVAV 134 >gi|17542154|ref|NP_502386.1| hypothetical protein T04A11.2 [Caenorhabditis elegans] gi|17542160|ref|NP_502389.1| hypothetical protein T04A11.5 [Caenorhabditis elegans] gi|3879387|emb|CAB05607.1| C. elegans predicted protein T04A11.2 [Caenorhabditis elegans] gi|3879388|emb|CAB05608.1| C. elegans predicted protein T04A11.5 [Caenorhabditis elegans] Length = 316 Score = 39.0 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +R +EV CG+ L + + K F+T G+L+AK + G+ V+ Sbjct: 66 FSLRWFTP-KTEVPLCGHATLATSHVLFNEVGNVNKEIKFDTQSGVLIAKRDEKGN--VE 122 Query: 120 MGEPILDWKLI-------PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 M P D + PL F + + F + + + S+ Sbjct: 123 MNFPEYDLASVKFNDTPNPLQGIFSEFEAPSFLFEVIKCVVPTEMIIESV 172 >gi|170696220|ref|ZP_02887353.1| proline racemase [Burkholderia graminis C4D1M] gi|170138864|gb|EDT07059.1| proline racemase [Burkholderia graminis C4D1M] Length = 318 Score = 39.0 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99 D ++ L+ + D S A + N G CG+G +V L R+ Sbjct: 57 RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115 Query: 100 ETIRGILVAKENRDGSISV 118 ET G++ A N DGS++V Sbjct: 116 ETPVGVVEATLNDDGSVAV 134 >gi|296156443|ref|ZP_06839281.1| 4-hydroxyproline epimerase [Burkholderia sp. Ch1-1] gi|295893042|gb|EFG72822.1| 4-hydroxyproline epimerase [Burkholderia sp. Ch1-1] Length = 318 Score = 39.0 bits (90), Expect = 0.97, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + D + A + N G CG+G +V L R+K ET G++ A Sbjct: 66 LLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIKPGRHRIETPVGVVEA 124 Query: 109 KENRDGSISV 118 N DGS++V Sbjct: 125 TLNEDGSVAV 134 >gi|292489059|ref|YP_003531946.1| proline racemase [Erwinia amylovora CFBP1430] gi|292900187|ref|YP_003539556.1| proline racemase [Erwinia amylovora ATCC 49946] gi|291200035|emb|CBJ47160.1| putative proline racemase [Erwinia amylovora ATCC 49946] gi|291554493|emb|CBA22032.1| Proline racemase [Erwinia amylovora CFBP1430] Length = 309 Score = 39.0 bits (90), Expect = 0.97, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106 L+ A + N G CG+G R + ++ ET G + Sbjct: 63 LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119 Query: 107 VAKENRDGSISV 118 +A ++D ++SV Sbjct: 120 LAVLHQDLTVSV 131 >gi|184157646|ref|YP_001845985.1| proline racemase [Acinetobacter baumannii ACICU] gi|332872957|ref|ZP_08440919.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6014059] gi|183209240|gb|ACC56638.1| Proline racemase [Acinetobacter baumannii ACICU] gi|322507954|gb|ADX03408.1| proline racemase [Acinetobacter baumannii 1656-2] gi|323517545|gb|ADX91926.1| proline racemase [Acinetobacter baumannii TCDC-AB0715] gi|332738860|gb|EGJ69725.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6014059] Length = 310 Score = 39.0 bits (90), Expect = 0.97, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 72/255 (28%), Gaps = 51/255 (20%) Query: 13 GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68 G G DM ++ D + + D ++ L+ + A + N Sbjct: 27 GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126 G CG+G +V L K + T ET G + A + D S+SV Sbjct: 81 NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183 + +P R ++ + G V + N H D+L ++ Sbjct: 132 -RNVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVR 190 Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228 G + +F+ + ++R CG+ Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239 Query: 229 ACASVVASGCLHKTN 243 A + K Sbjct: 240 TSAKIACLAADGKLE 254 >gi|91779222|ref|YP_554430.1| putative proline racemase [Burkholderia xenovorans LB400] gi|91691882|gb|ABE35080.1| putative proline racemase [Burkholderia xenovorans LB400] Length = 318 Score = 38.6 bits (89), Expect = 1.00, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + D + A + N G CG+G +V L R+ ET G++ A Sbjct: 66 LLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIGPGRHRIETPVGVVEA 124 Query: 109 KENRDGSISV 118 N DGS++V Sbjct: 125 TLNEDGSVAV 134 >gi|226306081|ref|YP_002766041.1| phenazine biosynthesis protein [Rhodococcus erythropolis PR4] gi|226185198|dbj|BAH33302.1| putative phenazine biosynthesis protein [Rhodococcus erythropolis PR4] Length = 289 Score = 38.6 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 39/282 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV--DAFIRIINCDGSEVQS 76 +++D RG D + + + + + + + + + IR + +EV Sbjct: 25 VLLDARGLDD---PELQSVAAE---VGYAETAFLIEPELGGNPRHSRIRYFSPI-AEVPF 77 Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 CG+ LT R +FTFET G + D ++ + P+ + Sbjct: 78 CGHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGRSTATFISVEPSVSPIDHAV 137 Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196 + + GN H I V D +D +F + + M ++G Sbjct: 138 LTALLGLIGVDSSALDARYPAMLSYAGNTHPIV-VLRDQSTFDEFTFDPVAMRTLMDAQG 196 Query: 197 V--NLSIARVTSLESLDLR-------TWERGVGLTAACGSAACASVVASGCLHK----TN 243 ++I + + R E + + A+ T Sbjct: 197 WAGTVTILHPLDDNTFEARNLFPVGNIVEDPA-------TGSAAASTGGYLRKLEPAATP 249 Query: 244 RAVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278 R +++ G L ++ + + +TG A +G+ Sbjct: 250 RRITIHQ--GRHVGRPSVLEVDIPVDGGISVTGTAVPVVDGQ 289 >gi|322382280|ref|ZP_08056190.1| isomerase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153782|gb|EFX46153.1| isomerase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 341 Score = 38.6 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 18 ILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 VI +G + A + D F++ + AS R G Sbjct: 53 FSVISNKGNPAGVVLHADGLCAEDMQQIARQVGFNETSFVLKSDVAS--FRFRYFTP-GH 109 Query: 73 EVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128 E+ CG+ V L + + + + ET GIL + + + M + + K Sbjct: 110 EMDLCGHATVATVFCLKRQGLLPEVEELSVETKAGILKIRVSDTEQGFFIHMQQA--EPK 167 Query: 129 LIPLARSFDKM 139 IP S D + Sbjct: 168 FIPYEGSIDAL 178 >gi|329113618|ref|ZP_08242397.1| Putative isomerase [Acetobacter pomorum DM001] gi|326697064|gb|EGE48726.1| Putative isomerase [Acetobacter pomorum DM001] Length = 304 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 40/283 (14%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D D+I ++ + ++ + N + + I D RI +E+ G Sbjct: 32 VVFDA----DDIPTETMQKIAREMN--LSETVFILKPSTPEADYRARIFTP-MNELPFAG 84 Query: 79 N-----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWKLIPL 132 + + R+ + E G++ + R + + + M + ++ L Sbjct: 85 HPTIAAAHSVLARY-PDKANASLLKQECGIGVVPVEVLRSPAGLRLRMTQGAPTYRDTAL 143 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH-- 190 +R N F VVS G P + + L L+ + Sbjct: 144 SRETVAKMLGCSEADLANTPFE----VVSTGVPWLVVELSRFATISALVPDQGLIERECK 199 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS--AACASVVASGCLHKT 242 + + GV + + +R R GV CGS + A+ +A Sbjct: 200 AVRAAGV-TTFVERNDDGPVRIRV--RTFAPGEGVAEDPVCGSGNGSVAAFIARHKHADQ 256 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK-LDIKTG 284 V G IE + V+ A + EG+ L I+ G Sbjct: 257 KSGHYVAEQG----IEIERDGEVY----ASWDSEGETLRIRIG 291 >gi|196229963|ref|ZP_03128827.1| proline racemase [Chthoniobacter flavus Ellin428] gi|196226289|gb|EDY20795.1| proline racemase [Chthoniobacter flavus Ellin428] Length = 308 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 58/211 (27%), Gaps = 33/211 (15%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + D S I N G CG+G VV L ++ ET GI+ A Sbjct: 63 LLCEPSDPSCSVGIIFFNNIGYLG-MCGHGTIGVVATLAHLGKIGDGQLRIETPVGIIDA 121 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + G S K I L + +G V S P Sbjct: 122 TWHGKGRASCANVPSYRLAKDIRL-----DVPGLGVVVGDVAWGGNWFFLTKSNTGP--- 173 Query: 169 FFVEDDLYHY-DLASFGNLLAKHPMFSEGVNLSIA-----------RVTSLESLDLRTWE 216 V +D+ D+A + F E ++ V R ++ Sbjct: 174 -LVLNDVERLTDIAWRIRKILNTSGFPEVDHVEFYGDPQCGGDSRNFVLCPG----RAYD 228 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVS 247 R CG+ A + V Sbjct: 229 RSP-----CGTGTSAKLACLAADGMLPEGVE 254 >gi|325121735|gb|ADY81258.1| hypothetical protein BDGL_000672 [Acinetobacter calcoaceticus PHEA-2] Length = 310 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 41/213 (19%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108 L+ ++ A + N G CG+G +V L K + T ET G + A Sbjct: 63 LLCKPMNSKASAGVIFFNNTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEA 121 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + D S+SV + +P R ++ + G V + N H+ Sbjct: 122 TLHEDHSVSV---------RNVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHSQ 172 Query: 169 FFVEDDLYHYDLASF---------------GNLLAKHPMFSEGVNL---SIARVTSLESL 210 D+L ++ G + +F+ + Sbjct: 173 RVASDNLDQLTDYAWTVRQALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA-- 230 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 ++R CG+ A + K Sbjct: 231 ----YDRSP-----CGTGTSAKIACLAADGKLE 254 >gi|325569691|ref|ZP_08145738.1| PhzF family phenazine biosynthesis protein [Enterococcus casseliflavus ATCC 12755] gi|325157247|gb|EGC69412.1| PhzF family phenazine biosynthesis protein [Enterococcus casseliflavus ATCC 12755] Length = 285 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 12/104 (11%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 +T A++ + F + + + D EV CG+ + Sbjct: 27 EQPLTPQQKLAVAKE--LGFSETAFL--SKSPQADFRFDYFTP-KEEVDLCGHAT--IAS 79 Query: 87 FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 F +++ R+ + +T G L +DG I ++ +P+ Sbjct: 80 FALLSYLNKLSRQQYRIDTNAGRLSITI-KDGVIFMEQNKPLFS 122 >gi|282890154|ref|ZP_06298685.1| hypothetical protein pah_c013o066 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500005|gb|EFB42293.1| hypothetical protein pah_c013o066 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 298 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRKSFTFETIRGILVAK 109 + D +R G+E++ CG+ + + + FT ET GIL + Sbjct: 53 KSEKADFRLRFFTPPGNEIKFCGHATVGALNTIAHEGLYGCTEAKNFFTIETNAGILDVE 112 Query: 110 EN 111 + Sbjct: 113 ID 114 >gi|255527773|ref|ZP_05394625.1| phenazine biosynthesis protein PhzF family [Clostridium carboxidivorans P7] gi|296186950|ref|ZP_06855350.1| phenazine biosynthesis protein PhzF family protein [Clostridium carboxidivorans P7] gi|255508524|gb|EET84912.1| phenazine biosynthesis protein PhzF family [Clostridium carboxidivorans P7] gi|296048388|gb|EFG87822.1| phenazine biosynthesis protein PhzF family protein [Clostridium carboxidivorans P7] Length = 289 Score = 38.6 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 11/122 (9%) Query: 44 THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFET 101 F + I A D I + EV CG+ L S+ KS +T ET Sbjct: 42 VGFSETAFIKKSNKA--DFKINFFTPN-KEVDLCGHATIGTFYLLASKGIIKSGQYTQET 98 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 GIL + + I ++ +P +P D +I + +VS Sbjct: 99 KAGILKVECRNNNMIYMNQMKPKF--YEVPNKAD----IADSLNIDEEEIMSDIPIQIVS 152 Query: 162 MG 163 G Sbjct: 153 TG 154 >gi|169796424|ref|YP_001714217.1| putative proline racemase [Acinetobacter baumannii AYE] gi|213156463|ref|YP_002318883.1| proline racemase [Acinetobacter baumannii AB0057] gi|215483887|ref|YP_002326112.1| proline racemase [Acinetobacter baumannii AB307-0294] gi|301347231|ref|ZP_07227972.1| proline racemase [Acinetobacter baumannii AB056] gi|301513199|ref|ZP_07238436.1| proline racemase [Acinetobacter baumannii AB058] gi|301597011|ref|ZP_07242019.1| proline racemase [Acinetobacter baumannii AB059] gi|332855293|ref|ZP_08435798.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013150] gi|332871628|ref|ZP_08440101.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013113] gi|169149351|emb|CAM87235.1| conserved hypothetical protein; putative proline racemase [Acinetobacter baumannii AYE] gi|213055623|gb|ACJ40525.1| proline racemase [Acinetobacter baumannii AB0057] gi|213986794|gb|ACJ57093.1| proline racemase [Acinetobacter baumannii AB307-0294] gi|332727517|gb|EGJ58941.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013150] gi|332731318|gb|EGJ62613.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013113] Length = 310 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 47/253 (18%) Query: 13 GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCD 70 G G+ I+ R + D + + D ++ L+ + A + N Sbjct: 27 GTGD----IESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFNNT 82 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDWK 128 G CG+G +V L K + T ET G + A + D S+SV + Sbjct: 83 GYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV---------R 132 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF----- 183 +P R ++ + G V + N H D+L ++ Sbjct: 133 NVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVRQA 192 Query: 184 ----------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAAC 230 G + +F+ + ++R CG+ Sbjct: 193 LTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTGTS 241 Query: 231 ASVVASGCLHKTN 243 A + K Sbjct: 242 AKIACLAADGKLE 254 >gi|183598974|ref|ZP_02960467.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827] gi|188021191|gb|EDU59231.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827] Length = 316 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTF 99 D ++ L+ Q+ A + N +G CG+G + + + T Sbjct: 58 RGSDILVGALLCKPQNPQATAGVIFFNNEGYLG-MCGHGTIGLIASLAYLGTITVGEHTI 116 Query: 100 ETIRGILVAKENRDGSISVD 119 ET G + A + DGS+S+ Sbjct: 117 ETPVGDVQATLHPDGSVSIQ 136 >gi|255026234|ref|ZP_05298220.1| hypothetical protein LmonocytFSL_07555 [Listeria monocytogenes FSL J2-003] Length = 282 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD 113 + D + EV CG+ L ++ + +T ET G+L +D Sbjct: 52 ESNHADFKLEYFTP-KEEVDLCGHATIGTFTILMHLNKIHKSRYTIETNSGVLTITI-KD 109 Query: 114 GSISVDMGEPILDWKLIP 131 G+I ++ +P + +IP Sbjct: 110 GTIFMEQNQPTF-YDIIP 126 >gi|261343896|ref|ZP_05971541.1| putative epimerase [Providencia rustigianii DSM 4541] gi|282568282|gb|EFB73817.1| putative epimerase [Providencia rustigianii DSM 4541] Length = 316 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 L+ + A + N +G CG+G +V L R+ ET G + A Sbjct: 67 LLCQPVNPKAAAGVIFFNNEGYLG-MCGHGTIGLVASLHHMGRISYGEHLIETPVGDVTA 125 Query: 109 KENRDGSISVD 119 K + DGS+S+ Sbjct: 126 KLHEDGSVSIQ 136 >gi|220678692|emb|CAX13877.1| novel protein similar to vertebrate phenazine biosynthesis-like protein domain containing (PBLD, zgc:112210) [Danio rerio] Length = 286 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V+A K + GG L +E D+ + +TGEA+ +G L I Sbjct: 228 TGSAHTVLAGYWSEKLKKKKMLAYQCSSRGGELKLEIRDDGRLDITGEAQIILQGTLKI 286 >gi|66773120|ref|NP_001019582.1| MAWD binding protein like [Danio rerio] gi|166158304|ref|NP_001107317.1| hypothetical protein LOC100135119 [Xenopus (Silurana) tropicalis] gi|66267501|gb|AAH95689.1| Zgc:112210 [Danio rerio] gi|157423261|gb|AAI53410.1| Zgc:112210 [Danio rerio] gi|161611702|gb|AAI55871.1| LOC100135119 protein [Xenopus (Silurana) tropicalis] Length = 286 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V+A K + GG L +E D+ + +TGEA+ +G L I Sbjct: 228 TGSAHTVLAGYWSEKLKKKKMLAYQCSSRGGELKLEIRDDGRLDITGEAQIILQGTLKI 286 >gi|328881005|emb|CCA54244.1| Phenazine biosynthesis protein PhzF [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 4/85 (4%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 D +R +EV CG+ L S S F GIL A D Sbjct: 52 PAGGEADWALRWFTPT-TEVDMCGHATLATAHVLHSTGAATGSIRFAARCGILGATAEAD 110 Query: 114 GSISVDMGEPILDWKLIPLARSFDK 138 G+I+ M P +P+ +K Sbjct: 111 GTIT--MDFPTSSLTPVPVPAGLEK 133 >gi|298293153|ref|YP_003695092.1| Proline racemase [Starkeya novella DSM 506] gi|296929664|gb|ADH90473.1| Proline racemase [Starkeya novella DSM 506] Length = 337 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 11/104 (10%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77 +I+ R + AL + H D + + DA + I DG++ C Sbjct: 34 IIEKRAFLEENYDWVREALMREPRGHRDMFGVFLTPPSSRDYDAGLIYI--DGTQYSHMC 91 Query: 78 GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG 114 G+G V + + FET G++ A+ DG Sbjct: 92 GHGTIAVAMAMVAHGMVRRSDDGITKIRFETTAGLVQAEVATDG 135 >gi|323357770|ref|YP_004224166.1| epimerase, PhzC/PhzF homolog [Microbacterium testaceum StLB037] gi|323274141|dbj|BAJ74286.1| predicted epimerase, PhzC/PhzF homolog [Microbacterium testaceum StLB037] Length = 296 Score = 38.2 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 16/173 (9%) Query: 19 LVIDMRGCHDNITSDAINALSTDDN---THFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75 +++D R + + ++TD T F + +R + D EVQ Sbjct: 35 VILDARA----LDDAQMQRIATDLGHPETAFVG-------EREGRRVAVRYFSPD-DEVQ 82 Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 CG+ L ++TFET G + +G + G ++ ++ L Sbjct: 83 FCGHATIATAVALAEAEGVGAYTFETAAGAVEVVTETEGE-RIIAGFTSVEPHVVDLEDV 141 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 D + + GN H I V G L Sbjct: 142 VADRLLDLLGLTRADLDERMPLAQAFAGNLHPIVAVASRDTFDAFTFEGPRLR 194 >gi|270261283|ref|ZP_06189556.1| proline racemase [Serratia odorifera 4Rx13] gi|270044767|gb|EFA17858.1| proline racemase [Serratia odorifera 4Rx13] Length = 315 Score = 38.2 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTFETIRGILVA 108 L+ A + N G CG+G + V R+ ET G + A Sbjct: 69 LLCQPCSPQAAAGVIFFNNAGYLG-MCGHGTIGLVASLAYLGRISAGEHLIETPVGTVNA 127 Query: 109 KENRDGSISVD 119 ++DGS++V+ Sbjct: 128 TLHQDGSVTVE 138 >gi|221197504|ref|ZP_03570551.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans CGD2M] gi|221204177|ref|ZP_03577195.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans CGD2] gi|221176343|gb|EEE08772.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans CGD2] gi|221184058|gb|EEE16458.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans CGD2M] Length = 348 Score = 38.2 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 90/272 (33%), Gaps = 56/272 (20%) Query: 31 TSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 T D++ L + Q+ L+ A ++ D + G+ CVV L Sbjct: 44 TDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFIVLQADKAHP-MSGSNCICVVTAL 102 Query: 89 TSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDK 138 + +T G++ A+ + RDG +S+DM ++ I + Sbjct: 103 LELGMVPMQEPETTVVLDTPAGLVTARADCRDGRCVGVSLDMVPSFVEHLDINVHTPEFG 162 Query: 139 MDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-------- 189 G V + L + +S+ LA+ G L + Sbjct: 163 TIPVDIAFGGVYYALVDVDRIGLSI----------APDNARQLATHGVRLREIINRQISV 212 Query: 190 -HPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAACASVVASGCLH 240 HP+++E +N +A V +D ++ R V + CG+ + A++ Sbjct: 213 QHPLYAE-IN-EVAYVMFRNRIDDIVYQTCTTLPPGR-VDRSP-CGTGSSANLATLAARG 268 Query: 241 KTNRAVSV-------KMLGGGLLIEWHDNNHV 265 + V V +GG IE V Sbjct: 269 R----VQVGDCLTSRSTIGGEFRIELLGTTEV 296 >gi|21231852|ref|NP_637769.1| hypothetical protein XCC2415 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768021|ref|YP_242783.1| hypothetical protein XC_1697 [Xanthomonas campestris pv. campestris str. 8004] gi|188991146|ref|YP_001903156.1| hypothetical protein xccb100_1751 [Xanthomonas campestris pv. campestris str. B100] gi|21113571|gb|AAM41693.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573353|gb|AAY48763.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732906|emb|CAP51102.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 312 Score = 38.2 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 9/105 (8%) Query: 22 DMRGCHDNITSDA---INALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQS 76 D+ C + SD +A++ + D ++ L+ +D S + N G Sbjct: 30 DLAQCRERFRSDFDHWRSAIACEP-RGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-M 87 Query: 77 CGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 CG+G VVR L R+ ET G + DG++S+D Sbjct: 88 CGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVALADDGTVSID 132 >gi|149909797|ref|ZP_01898448.1| Phenazine biosynthesis PhzC/PhzF protein [Moritella sp. PE36] gi|149807129|gb|EDM67085.1| Phenazine biosynthesis PhzC/PhzF protein [Moritella sp. PE36] Length = 280 Score = 38.2 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 26/220 (11%) Query: 30 ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 + ++ D F + + + + +R + + +EV CG+ L Sbjct: 31 PEPKEMQRIAAD--VGFSETAFVAPSKGSKR--TVRYYSPE-AEVPFCGHATIATGVALG 85 Query: 90 SRMKRKSFTFETIRGILVAKENR-DGSISVDMG--EPILDWKLIPLARSFDKMDRDRFHI 146 + S+ FET G + + + +G I + EP +W L + D + + + Sbjct: 86 KQSGSGSYQFETTIGTIPVEVSEHNGEIRAALTSVEPKFEWPSEILLK--DTLAALGWSL 143 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 ++ P GN H + V+ DL+ L K + + L + + Sbjct: 144 DDLDTSIP--PARTFGGNWHLVLAVKSKQRLDDLSYDFEKLKKIMLDDDLTTLQLIWREN 201 Query: 207 LESLDLR-------TWERGVGLTAACGSAACASVVASGCL 239 + + R E + A A + Sbjct: 202 DKLIHSRNPFPVGGVVEDSA-------TGAAAVALGGYLR 234 >gi|289803758|ref|ZP_06534387.1| hypothetical protein Salmonellaentericaenterica_04152 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 185 Score = 38.2 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|254477843|ref|ZP_05091228.1| phenazine biosynthesis protein, PhzF family [Ruegeria sp. R11] gi|214028428|gb|EEB69264.1| phenazine biosynthesis protein, PhzF family [Ruegeria sp. R11] Length = 298 Score = 38.2 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 5/137 (3%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +R + +G EV CG+ + R L+ + G + + D S Sbjct: 61 DGDHWRVRYFSPEG-EVDFCGHATIALGRALSDLKGPARYDLRINAGDISVASHTDDSGK 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175 + + P + F + + P + + GN H + + D L Sbjct: 120 TLIELQSPPTRSGPAEGAVLAEALALFDLSEEDLDPALPPAIANAGNDHLVLALRQRDRL 179 Query: 176 Y--HYDLASFGNLLAKH 190 YDLA L+ +H Sbjct: 180 ARMEYDLADGRRLMERH 196 >gi|182439950|ref|YP_001827669.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468466|dbj|BAG22986.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 273 Score = 38.2 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 3/100 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 + D +R +EV CG+ L + + F GIL A + D Sbjct: 54 PPGGTADWALRWFTP-ATEVDMCGHATLATAHVLHTTDLATGPVRFAARCGILTATAHPD 112 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153 GS+++D L + +P + D + D + Sbjct: 113 GSLTLDFPTSPLTEEPVPYGLA-DALGADPVSVHDTGEHI 151 >gi|269863421|ref|XP_002651216.1| diaminopimelate epimerase [Enterocytozoon bieneusi H348] gi|220064933|gb|EED42839.1| diaminopimelate epimerase [Enterocytozoon bieneusi H348] Length = 167 Score = 38.2 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 31 TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 T NA + D +++ A + I+N DGS + GNG+ LT Sbjct: 55 TPRPANAKAHRC----DGLLV--GPFQAEPPFDLLIVNTDGSLAERIGNGVTIFAHALTG 108 Query: 91 RM 92 + Sbjct: 109 QG 110 >gi|217072906|gb|ACJ84813.1| unknown [Medicago truncatula] Length = 292 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 225 CGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CGSA C S L K + GG L I + VF+ G+A EG + Sbjct: 233 CGSAHCGLAPYWSKKLGKCDLKAYQASARGGILNIHIDEQKQRVFLRGKAVTVMEGSV 290 >gi|167567151|ref|ZP_02360067.1| proline racemase, putative [Burkholderia oklahomensis EO147] gi|167572197|ref|ZP_02365071.1| proline racemase, putative [Burkholderia oklahomensis C6786] Length = 310 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L+ + A A + N G CG+G +VR L Sbjct: 43 DRFRTACILEPRGSDVLVGALLCEPVAADAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ ET G + A + D S+SV Sbjct: 102 MGRIAPGVHRIETPVGDVEATLHDDLSVSV 131 >gi|302540660|ref|ZP_07293002.1| phenazine biosynthesis protein PhzF family protein [Streptomyces hygroscopicus ATCC 53653] gi|302458278|gb|EFL21371.1| phenazine biosynthesis protein PhzF family protein [Streptomyces himastatinicus ATCC 53653] Length = 271 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113 + A D +R + +EV CG+ L + + F T+ G+L A + D Sbjct: 54 PEGAEADWALRWLTP-ATEVSMCGHATLATAHVLRTTGAATGTVRFATLSGVLSAAGDPD 112 Query: 114 GSISVD 119 G+I++D Sbjct: 113 GTITLD 118 >gi|126725988|ref|ZP_01741830.1| phenazine biosynthesis protein, PhzF family [Rhodobacterales bacterium HTCC2150] gi|126705192|gb|EBA04283.1| phenazine biosynthesis protein, PhzF family [Rhodobacterales bacterium HTCC2150] Length = 293 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 16/126 (12%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRKSFTFETIRGILVAKE 110 D +R D E+ G+ V L R FT E G++ Sbjct: 53 SDIADFGVRYYLAD-KEIPMAGHPTIATVASLLDRGLIELQDGHADFTLEVGAGVMPINV 111 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + D M R FD D + N + +P VVS G P I Sbjct: 112 DGDQITMTQMAPV--------FGRKFDASDIADIYGLDANEIV-GSPQVVSTGTPFCIAV 162 Query: 171 VEDDLY 176 V+D + Sbjct: 163 VKDKIA 168 >gi|290961965|ref|YP_003493147.1| oxidoreductase [Streptomyces scabiei 87.22] gi|260651491|emb|CBG74613.1| putative oxidoreductase [Streptomyces scabiei 87.22] Length = 269 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 41/242 (16%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L S F T G+L+A D Sbjct: 52 PPGGEADWALRWFTP-VAEVALCGHATLATAHVLNSTNAHEGPVRFATRSGVLLATPRPD 110 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 GS+++D L +P + + + + V G P+ + + Sbjct: 111 GSLTLDFPTAPLTPVAVPDGVG-EALGAEPLN-------------AVDTG-PNVGDLLVE 155 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226 + L +SE ++ AR + G + C G Sbjct: 156 LADEKTVLGLAPDLRSLGRYSERGIIATARAEDPAA--------GYDYVSRCFFPNLGID 207 Query: 227 ----SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + + + +A + + G + E ++G A +G+ Sbjct: 208 EDPVTGSAHTALAPYWSARLGSPDLTGLQASPRSGRVRTELR-GGRTLLSGRAVTVIDGE 266 Query: 279 LD 280 L Sbjct: 267 LT 268 >gi|313624597|gb|EFR94578.1| PhzF family phenazine biosynthesis protein [Listeria innocua FSL J1-023] Length = 282 Score = 37.8 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 16/137 (11%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111 D + EV CG+ + F +++ + +T ET GIL Sbjct: 52 DSKMADYKLEYFTP-KEEVDLCGHAT--IGSFAILMYLNKLHKNQYTIETNSGILTITL- 107 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG+I ++ P + +IP + D + + +VS G + + Sbjct: 108 KDGTIFMEQNRPNF-YDIIPPNELTECFDLNMIN-------TNYQVQIVSTGLKDILIPI 159 Query: 172 EDDLYHYDLASFGNLLA 188 + ++ + L + Sbjct: 160 KSEIDLHALEPNFEKIR 176 >gi|302533221|ref|ZP_07285563.1| oxidoreductase [Streptomyces sp. C] gi|302442116|gb|EFL13932.1| oxidoreductase [Streptomyces sp. C] Length = 272 Score = 37.8 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 70/254 (27%), Gaps = 67/254 (26%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ + + R F GIL A D Sbjct: 53 PPGGDADWALRWFTP-AAEVDMCGHATLATAHVIAAAGLARGPVRFAARCGILTADVAGD 111 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G++++D L D + +G F Sbjct: 112 GTVTMDFPTSSLTP--------LDPVPAVERALGAPAKSFHDTA---------------- 147 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-ERGVGLT---------- 222 G+LL + E R + + LR + RGV +T Sbjct: 148 -------EHIGDLLV--ELADERT----VRELAPDHAALRAYARRGVIVTAPAEDPSRGY 194 Query: 223 --------AACG------SAACASVVASGCLHKTNRAVSVKMLGGG---LLIEWHDNNHV 265 A G + + + +A + R + GG L+ + Sbjct: 195 DFVSRGFFPAVGIDEDPVTGSAHTALAPFWAARLGRTELTGLQGGTRTGLVRVRLAGDRT 254 Query: 266 FMTGEAKKEWEGKL 279 +TG A +G+L Sbjct: 255 LLTGRAVTVLDGEL 268 >gi|51491893|ref|NP_612539.2| phenazine biosynthesis-like domain-containing protein [Rattus norvegicus] gi|81884389|sp|Q68G31|PBLD_RAT RecName: Full=Phenazine biosynthesis-like domain-containing protein gi|51261154|gb|AAH78735.1| Phenazine biosynthesis-like protein domain containing [Rattus norvegicus] gi|149043908|gb|EDL97359.1| rCG60889, isoform CRA_a [Rattus norvegicus] Length = 288 Score = 37.8 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Query: 227 SAACASVVASGCLHKTN----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + +V++S + RA GG L I + V M G A EG L Sbjct: 230 TGSAHTVLSSYWSQQLGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGMLT 287 >gi|228909216|ref|ZP_04073042.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL 200] gi|228850305|gb|EEM95133.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL 200] Length = 299 Score = 37.8 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + ++ + ET GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLAIETKAGILPIQIDVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 G + M + LA S D P+ + N V+ Sbjct: 113 EKGETFIKMRQAAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|212709136|ref|ZP_03317264.1| hypothetical protein PROVALCAL_00169 [Providencia alcalifaciens DSM 30120] gi|212688048|gb|EEB47576.1| hypothetical protein PROVALCAL_00169 [Providencia alcalifaciens DSM 30120] Length = 299 Score = 37.8 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 17/144 (11%) Query: 36 NALSTDDNTHFDQIMLIHDFQDAS--VDAFIRIINCDGSEVQSCGNGMRC--VVRFLTSR 91 + F + ++ + A D + + SEV CG+ F ++ Sbjct: 44 QKIEIARQVGFSETAFVYTGESAGEETDYKVDFFTPE-SEVDFCGHATLAVFFTLFSLNQ 102 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 + +++ +T GIL + DG I M + +P+ R ++ +G Sbjct: 103 LGAGTYSQKTKAGILNVTVSADGVI---M------EQALPITRQGPDVNAVAAALGIPTE 153 Query: 152 LFLRNPF---VVSMGNPHAIFFVE 172 + ++S G P + V+ Sbjct: 154 TITKTGLPIEIISTGLPDILVPVQ 177 >gi|16799856|ref|NP_470124.1| hypothetical protein lin0782 [Listeria innocua Clip11262] gi|16413233|emb|CAC96014.1| lin0782 [Listeria innocua Clip11262] Length = 282 Score = 37.8 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 16/137 (11%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111 D + EV CG+ + F +++ + +T ET G+L Sbjct: 52 DSKIADYKLEYFTP-KEEVDLCGHAT--IGSFAILMHLNKLHKNQYTIETNSGVLTITL- 107 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG+I ++ P + +IP + D ++ + +VS G + + Sbjct: 108 KDGTIFMEQNRPNF-YDIIPPNELTECFDLNKVN-------THYQVQIVSTGLKDILIPI 159 Query: 172 EDDLYHYDLASFGNLLA 188 + ++ + L + Sbjct: 160 KSEIDLHALEPNFEKIR 176 >gi|99078177|ref|YP_611435.1| proline racemase [Ruegeria sp. TM1040] gi|99035315|gb|ABF62173.1| proline racemase [Ruegeria sp. TM1040] Length = 308 Score = 37.8 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 11/120 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 L+ + D + + D + + CG+G + L R+ + ET GI+ Sbjct: 60 LLVEPVDPECVTGVIYFDAD-AVLGMCGHGTIGLAVTLAHLGRIDVGTHKIETPAGIVTV 118 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH----IGPVNHLFLRNPFVVSMGN 164 + + ++SV ++ + I A S + F G P VS GN Sbjct: 119 ELHDANTVSVT----NIESRRIHHAVSVEVKGHGSFTGDLAYGGNWFFICDAPIEVSTGN 174 >gi|323456537|gb|EGB12404.1| hypothetical protein AURANDRAFT_19587 [Aureococcus anophagefferens] Length = 356 Score = 37.8 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R G+EV CG+G L F++ G+L A++ G I +D Sbjct: 142 YGLRWFTPSGAEVDLCGHGTLAAAHALFEDDAALDEVAFDSRSGVLNARKLDGGYIELDF 201 Query: 121 GEPILDWKLIP 131 P +P Sbjct: 202 --PKDAPADVP 210 >gi|34498281|ref|NP_902496.1| proline racemace [Chromobacterium violaceum ATCC 12472] gi|34332852|gb|AAQ60494.2| probable proline racemace [Chromobacterium violaceum ATCC 12472] Length = 308 Score = 37.8 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 15/95 (15%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGM-------RC 83 D + D ++ L + + N G CG+G C Sbjct: 43 DQWRRACLLEPRGSDVLVGALYCEPVSPDAACGVIFFNNTGYIG-MCGHGTIGLIASLHC 101 Query: 84 VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + R + + +T G + A + DGS+++ Sbjct: 102 LGR-----IAPGAHKIDTPVGPVDAVLHEDGSVTL 131 >gi|330819676|ref|YP_004348538.1| Putative proline racemase [Burkholderia gladioli BSR3] gi|327371671|gb|AEA63026.1| Putative proline racemase [Burkholderia gladioli BSR3] Length = 321 Score = 37.8 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D A + D ++ L+ + D A + N G CG+G +V L Sbjct: 43 DDWRAAVVTEPRGSDVVVGALLCEPLDPGCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISV 118 R+ + ET GI+ A N D S+SV Sbjct: 102 LGRIGPGTHRIETPVGIVEATLNADRSVSV 131 >gi|256377977|ref|YP_003101637.1| hypothetical protein Amir_3920 [Actinosynnema mirum DSM 43827] gi|255922280|gb|ACU37791.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827] Length = 270 Score = 37.8 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 11/70 (15%) Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMT 268 WERG CGS A A +T+ V+ GG + + + V + Sbjct: 204 VWERG------CGSGAAALAAYLAWKGRTSVTTRVRQPGGVMTVAADHDARGGLTGVRVQ 257 Query: 269 GEAKKEWEGK 278 G + EG+ Sbjct: 258 GTVRVVAEGR 267 >gi|123437271|ref|XP_001309433.1| phenazine biosynthesis protein PhzF family protein [Trichomonas vaginalis G3] gi|121891160|gb|EAX96503.1| phenazine biosynthesis protein PhzF family protein [Trichomonas vaginalis G3] Length = 236 Score = 37.8 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 24/128 (18%) Query: 47 DQI---MLIHDFQDASV-------DAFIRIINCDGSEVQSCGNGMR----CVVRFLTSRM 92 DQI + I + + +R G E+ CG+ + RF + Sbjct: 7 DQIMQSIAIENNLSETAFTVREGDHYRLRWFTP-GGEIDLCGHATLATSYVIFRF-YEKT 64 Query: 93 KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152 TF T GIL K+ + + M P + + + + + + P+ Sbjct: 65 -ISEVTFHTKGGILTVKKQGNL---LQMNFPAYKLQKVEVTKEMEDAIGHK----PLEAY 116 Query: 153 FLRNPFVV 160 R+ V Sbjct: 117 ISRDLVCV 124 >gi|312190962|gb|ADQ43387.1| putative trans-2,3-dihydro-3-hydroxyanthranilate isomerase [Streptomyces cinnamonensis] Length = 278 Score = 37.8 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 25/144 (17%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-----------FQDAS 59 M N +V+D + +T + + D+ DQ+ I Sbjct: 1 MH---N-YVVVDAFAR-EPLTGNPVAVFFDADDLTADQMQRIAREMNLSETTFVLAPKQG 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SIS 117 D +RI +E+ G+ + L R ET G++ + R G +S Sbjct: 56 GDVHVRIFTP-VNELPFAGHPLLGTAIALGRRTDADQLRIETAMGVIPFELQRVGGQVVS 114 Query: 118 VDMGEPILDWKLIPLARSFDKMDR 141 M +P +P+ FD+ + Sbjct: 115 TSMRQP------VPVWEPFDRAEE 132 >gi|72160500|ref|YP_288157.1| phenazine biosynthesis PhzC/PhzF protein [Thermobifida fusca YX] gi|71914232|gb|AAZ54134.1| Phenazine biosynthesis PhzC/PhzF protein [Thermobifida fusca YX] Length = 267 Score = 37.8 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 73/233 (31%), Gaps = 19/233 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + A D +R +EV CG+ L + F F + G+L Sbjct: 48 FVRPLAGADADYELRWFTPT-TEVDLCGHATLAAAHVLAAGGAEGPFRFASRSGVLTVT- 105 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 RDG + +D K +P + + G + N + V + + Sbjct: 106 ARDGLLWLDFPANPPYAKDVPDGL-VAALGGEPVWAGFSD----VNDYFVVYPDEATVRA 160 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + DL + + P G ++ G+ GSA Sbjct: 161 LAPDLAEVARCTVRGVTVTAPADP-GQPYDFVSRLFAPAI-------GIPEDPVTGSAHT 212 Query: 231 ASV-VASGCLHKTN-RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279 A + L +T AV GG L++E + + V + G A EG L Sbjct: 213 ALGPYWAQRLGRTRLDAVQCSARGGRLVVELPADAPDRVLIGGTAVTVSEGTL 265 >gi|326792517|ref|YP_004310338.1| phenazine biosynthesis protein PhzF family [Clostridium lentocellum DSM 5427] gi|326543281|gb|ADZ85140.1| phenazine biosynthesis protein PhzF family [Clostridium lentocellum DSM 5427] Length = 292 Score = 37.8 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAK 109 + D +R G E CG+ ++F+ + S F ET G+L Sbjct: 49 CKSDVADYKLRYFTP-GHETPLCGHATIGTMKFIVDGLNANSDLDFKIETRAGLLDIH 105 >gi|167035128|ref|YP_001670359.1| proline racemase [Pseudomonas putida GB-1] gi|166861616|gb|ABZ00024.1| proline racemase [Pseudomonas putida GB-1] Length = 308 Score = 37.8 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 43/234 (18%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L A + N G + CG+G +V L Sbjct: 43 DQWRKACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 + +T G + A + DG+I+V + + +A + R G Sbjct: 102 LGLIAPGEHKIDTPVGQVSATLHEDGAITVGNVPSYRYRQQVAVAVPGHGVVRGDIAWGG 161 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF---------------GNLLAKHPMF 193 F+VS H D+ ++ G + +F Sbjct: 162 ------NWFFLVS---EHGQRIELDNREALTEYTWAMLKALEAQGITGENGAPIDHVELF 212 Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 ++ N + ++R CG+ A + K Sbjct: 213 ADDANADSRNFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255 >gi|324327321|gb|ADY22581.1| putative phenazine biosynthesis-like protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 37.8 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + + + T E GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|301054916|ref|YP_003793127.1| putative phenazine biosynthesis-like protein [Bacillus anthracis CI] gi|300377085|gb|ADK05989.1| putative Phenazine biosynthesis-like protein, PhzC-PhzF Family [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 37.8 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + + + T E GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|325915141|ref|ZP_08177467.1| proline racemase [Xanthomonas vesicatoria ATCC 35937] gi|325538663|gb|EGD10333.1| proline racemase [Xanthomonas vesicatoria ATCC 35937] Length = 312 Score = 37.4 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D + + D ++ L+ +D + + N G CG+G VVR L Sbjct: 43 DHWRSAIACEPRGSDTMVGALLLPARDPTACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101 Query: 91 --RMKRKSFTFETIRGILVAKENRDGSISVD 119 R+ ET G + DG++SVD Sbjct: 102 LGRIGPGQHRIETPVGTVGVALADDGTVSVD 132 >gi|229157001|ref|ZP_04285082.1| Phenazine biosynthesis protein PhzF [Bacillus cereus ATCC 4342] gi|228626491|gb|EEK83237.1| Phenazine biosynthesis protein PhzF [Bacillus cereus ATCC 4342] Length = 299 Score = 37.4 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + + + T E GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|311893905|dbj|BAJ26313.1| hypothetical protein KSE_04660 [Kitasatospora setae KM-6054] Length = 273 Score = 37.4 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113 D +R +EV CG+ L + F GIL A+ D Sbjct: 54 PPGGDADWALRWFTP-VTEVDMCGHATLATAHVLHTTGTATGPVRFTARCGILTAETGPD 112 Query: 114 GSISVDMGEPILDWKLIP 131 G++++D L +P Sbjct: 113 GAVTMDFPTSDLTPVAVP 130 >gi|218904551|ref|YP_002452385.1| phenazine biosynthesis protein PhzF family [Bacillus cereus AH820] gi|218536519|gb|ACK88917.1| phenazine biosynthesis protein PhzF family [Bacillus cereus AH820] Length = 299 Score = 37.4 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111 D +R G E+ CG+G + L + + + T E GIL + N Sbjct: 54 SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112 Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 +G + M + LA S D P+ + N V+ Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166 >gi|55379132|ref|YP_136982.1| proline racemase [Haloarcula marismortui ATCC 43049] gi|55231857|gb|AAV47276.1| proline racemase [Haloarcula marismortui ATCC 43049] Length = 323 Score = 37.4 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 36/270 (13%) Query: 23 MRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 R T+D + L + H D + D + ++ DG + CG+G+ Sbjct: 37 ERRDRFEATADGVRKLLMQEPRGHADMFGAV-PVPTDRADLGVFFMDTDG-YLDMCGHGL 94 Query: 82 RCVVRFLTSRMK---RKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLIPLARSFD 137 VV L R + T ET G++ DG + + + + Sbjct: 95 IGVVTALIERGELPEAPELTVETPAGLVDVTVKIADGVVR----RVAFENVDSYVCETV- 149 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA-----SFGNLLAKHPM 192 +++D + VV + + ED D A + + K P+ Sbjct: 150 TVEQDGVPVEARIVYSGNYFAVVDADSLGVVLNSEDATQCIDPALELRRAVNDAAPKDPV 209 Query: 193 FSEGVNLSIARVTSLESLD--LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 +S +T+ + D + G + CG+ CA T V Sbjct: 210 TGTRATVSAVELTASDDSDRSCVVFADGSVDRSPCGTGTCA--------RLTLHHVD--- 258 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 G L + V +TG +EG + Sbjct: 259 --GDLAV----GERVEVTGPVGSTFEGYIT 282 >gi|168819357|ref|ZP_02831357.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343687|gb|EDZ30451.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085932|emb|CBY95706.1| Uncharacterized isomerase yddE ORFB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 297 Score = 37.4 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHEKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|324326804|gb|ADY22064.1| proline racemase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 313 Score = 37.4 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ +DA + N +GS G + Sbjct: 37 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEIDAAVLFFNHEGSMPLHYGGIV 95 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 96 AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138 >gi|229005654|ref|ZP_04163358.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock1-4] gi|228755588|gb|EEM04929.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock1-4] Length = 249 Score = 37.4 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 11/115 (9%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR 112 D IR G E+ CG+ + L R +++ T ET +L + Sbjct: 3 PSNVADIRIRYFTP-GHEMNLCGHATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDI 61 Query: 113 DGS----ISVDMGEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 D + I + P D + LA S D P+ + ++ Sbjct: 62 DENGESFIKMRQTAPQFQKFDGSIEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 116 >gi|255635872|gb|ACU18283.1| unknown [Glycine max] Length = 197 Score = 37.4 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274 GV CG A CA S L K + GG L + + N V + G+A K Sbjct: 131 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 190 Query: 275 WEG 277 EG Sbjct: 191 MEG 193 >gi|255644698|gb|ACU22851.1| unknown [Glycine max] Length = 301 Score = 37.4 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274 GV CG A CA S L K + GG L + + N V + G+A K Sbjct: 235 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 294 Query: 275 WEG 277 EG Sbjct: 295 MEG 297 >gi|295699990|ref|YP_003607883.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1002] gi|295439203|gb|ADG18372.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1002] Length = 318 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99 D ++ L+ + D S A + N G CG+G +V L R+ + Sbjct: 57 RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHRGRIGQGRHLI 115 Query: 100 ETIRGILVAKENRDGSISV 118 ET G++ A N DG ++V Sbjct: 116 ETPVGVVEATLNEDGGVAV 134 >gi|227356507|ref|ZP_03840894.1| possible phenazine biosynthesis protein [Proteus mirabilis ATCC 29906] gi|227163263|gb|EEI48190.1| possible phenazine biosynthesis protein [Proteus mirabilis ATCC 29906] Length = 295 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ +T++ A++ F + ++ D D + +G EV CG Sbjct: 33 VVLN----PPKLTTEQKIAIAQQ--VGFSETAFVYSGDD--TDFKVDFFTAEG-EVDFCG 83 Query: 79 NGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116 + V L +K ++ +T GIL N D + Sbjct: 84 HATLAVFFTLSSLKLLKPGDYSQKTKAGILTVTINHDNIV 123 >gi|301054355|ref|YP_003792566.1| proline racemase [Bacillus anthracis CI] gi|300376524|gb|ADK05428.1| conserved hypothetical proline racemase [Bacillus cereus biovar anthracis str. CI] Length = 313 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ VDA + N +GS G + Sbjct: 37 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 96 AVITMLLESGYLKKRETNQYKIETLSGIFSVHAYVENDEVVSV 138 >gi|229139471|ref|ZP_04268042.1| Proline racemase [Bacillus cereus BDRD-ST26] gi|228644018|gb|EEL00279.1| Proline racemase [Bacillus cereus BDRD-ST26] Length = 308 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ VDA + N +GS G + Sbjct: 32 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 90 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 91 AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 133 >gi|206974086|ref|ZP_03235004.1| hypothetical protein BCH308197_2794 [Bacillus cereus H3081.97] gi|217960274|ref|YP_002338834.1| hypothetical protein BCAH187_A2884 [Bacillus cereus AH187] gi|222096332|ref|YP_002530389.1| proline racemase [Bacillus cereus Q1] gi|206748242|gb|EDZ59631.1| hypothetical protein BCH308197_2794 [Bacillus cereus H3081.97] gi|217063867|gb|ACJ78117.1| hypothetical protein BCAH187_A2884 [Bacillus cereus AH187] gi|221240390|gb|ACM13100.1| proline racemase [Bacillus cereus Q1] Length = 313 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ VDA + N +GS G + Sbjct: 37 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 96 AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138 >gi|49479615|ref|YP_036918.1| proline racemase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331171|gb|AAT61817.1| conserved hypothetical protein, possible proline racemase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 313 Score = 37.4 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ VDA + N +GS G + Sbjct: 37 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 96 AVITMLLESGYLKKRETNQYKIETLSGIFSVHAYVENDEVVSV 138 >gi|119510254|ref|ZP_01629391.1| Phenazine biosynthesis PhzC/PhzF protein [Nodularia spumigena CCY9414] gi|119465103|gb|EAW46003.1| Phenazine biosynthesis PhzC/PhzF protein [Nodularia spumigena CCY9414] Length = 265 Score = 37.4 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + A +A+ + ++ GG + + + + V ++G+A G+L Sbjct: 207 TGAAHCCLAAFWRDRLHKDEFLAFQASQRGGVVKVRYPGGDRVLLSGQAITVMRGEL 263 >gi|271963465|ref|YP_003337661.1| PhzF family phenazine biosynthesis protein [Streptosporangium roseum DSM 43021] gi|270506640|gb|ACZ84918.1| PhzF family phenazine biosynthesis protein [Streptosporangium roseum DSM 43021] Length = 301 Score = 37.4 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 14/198 (7%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D G L+ + + + D S +R +EV CG Sbjct: 46 VVLDASGLS------GAEMLAVAAEVGYSETAFVTSRDDESRTFRVRYFAP-SAEVAFCG 98 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138 + L R+ F+T G + DG +M L A + Sbjct: 99 HATIATSVALAERIGIGRLAFDTNAGEIAVDTFIDG----EMLRATLTSVPTRSAPVAEP 154 Query: 139 MDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + + + L P V GN H + DL L Sbjct: 155 VLDETLAVLGWSRDDLDRAFPPHVAFGGNDHLMLAAGSRERLADLDYDFEGLRSIMTREG 214 Query: 196 GVNLSIARVTSLESLDLR 213 +++ S R Sbjct: 215 WTTVNLFWRESDGRFHSR 232 >gi|166240856|ref|ZP_02240728.1| phenazine biosynthesis protein, PhzF family [Paenibacillus larvae subsp. larvae BRL-230010] Length = 138 Score = 37.4 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 18 ILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 VI +G + A + D F++ + AS R G Sbjct: 12 FSVISNKGNPAGVVLHADGLCAEDMQQIARQVGFNETSFVLKSDVAS--FRFRYFTP-GH 68 Query: 73 EVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128 E+ CG+ V L + + + + ET GIL + + + M + + K Sbjct: 69 EMDLCGHATVATVFCLKRQGLLPEVEELSVETKAGILKIRVSDTEQGFIIHMQQA--EPK 126 Query: 129 LIPLARSFDKM 139 IP S D + Sbjct: 127 FIPYEGSIDAL 137 >gi|42781919|ref|NP_979166.1| hypothetical protein BCE_2862 [Bacillus cereus ATCC 10987] gi|42737843|gb|AAS41774.1| hypothetical protein BCE_2862 [Bacillus cereus ATCC 10987] Length = 313 Score = 37.0 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ +DA + N +GS G + Sbjct: 37 NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEIDAAVLFFNHEGSIPLHYGGIV 95 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K + ET+ GI + A D +SV Sbjct: 96 AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138 >gi|229030514|ref|ZP_04186550.1| Proline racemase [Bacillus cereus AH1271] gi|228730781|gb|EEL81725.1| Proline racemase [Bacillus cereus AH1271] Length = 308 Score = 37.0 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 8/103 (7%) Query: 23 MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 + + L+ + +++ VDA + N +GS G + Sbjct: 32 NEQFSGELAEEMKLLLNEPRGFIGLNGCIVV-PSIHTEVDAAVIFFNHEGSIPLHYGGIV 90 Query: 82 RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118 + L S +K +T ET+ GI + A D +SV Sbjct: 91 AVITMLLESGYLKKRETNQYTIETLSGIFSVYAYVENDEVVSV 133 >gi|161613973|ref|YP_001587938.1| hypothetical protein SPAB_01711 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363337|gb|ABX67105.1| hypothetical protein SPAB_01711 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 297 Score = 37.0 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|56413473|ref|YP_150548.1| hypothetical protein SPA1287 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362397|ref|YP_002142034.1| hypothetical protein SSPA1196 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127730|gb|AAV77236.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093874|emb|CAR59359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 297 Score = 37.0 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|332188553|ref|ZP_08390272.1| phenazine biosynthesis PhzF family protein [Sphingomonas sp. S17] gi|332011397|gb|EGI53483.1| phenazine biosynthesis PhzF family protein [Sphingomonas sp. S17] Length = 267 Score = 37.0 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 29/240 (12%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETI-RGILVA 108 + D +R G EV+ CG+ L+S R+ F T G+L Sbjct: 49 FLVPSDGEEADFELRWFTP-GDEVEMCGHATLASGHVVLSSDTTREQVRFATRHAGVLEV 107 Query: 109 KENRDG-SISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + G S+S+ P + + A D + H + + V P Sbjct: 108 ARDGLGYSLSLPERTPSPEPLPEVVAALGVDGVVETLRHPAGYAVVVVDGAARVRACTPD 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + Y L S G + V + A + + Sbjct: 168 FTALAKAGRYVVILTSRGGEGEADVV--SRVFVP-AFAIDEDPV---------------- 208 Query: 227 SAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + A +V+ K R GG L + + V + G EG + Sbjct: 209 TGAAHAVITPYWTKKLGREAFTAEQASTRGGRLTCG-LEGDRVVLGGGCVTVIEGTFLLP 267 >gi|169840488|ref|ZP_02873676.1| hypothetical protein cdivTM_25664 [candidate division TM7 single-cell isolate TM7a] Length = 28 Score = 37.0 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 8/14 (57%) Query: 5 MVDFAKMEGIGNKI 18 M+ F K +G GN Sbjct: 1 MLKFEKYQGAGNDF 14 >gi|224583927|ref|YP_002637725.1| hypothetical protein SPC_2157 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468454|gb|ACN46284.1| hypothetical protein SPC_2157 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 307 Score = 37.0 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 62 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 120 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 176 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 177 LLKPDVD 183 >gi|126176257|ref|YP_001052406.1| PhzF family phenazine biosynthesis protein [Shewanella baltica OS155] gi|125999462|gb|ABN63537.1| phenazine biosynthesis protein PhzF family [Shewanella baltica OS155] Length = 288 Score = 37.0 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 22/159 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ DN++++A A++ + + + QD VD + G EV CG Sbjct: 23 VVLNA----DNLSNEAKLAIAQA--VGYSETAFV--SQDDEVDFELSFFTITG-EVDFCG 73 Query: 79 NGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 + + F T + + T G+L +G+I +++ P L Sbjct: 74 HAT--LAAFSTMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLPEY------LGM 125 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVE 172 + + I P + P V S G P I V Sbjct: 126 FSYEAISELIGIDPAVLESTQLPIEVISTGLPDIIVPVP 164 >gi|283478945|emb|CAY74861.1| pyruvate oxidase [Erwinia pyrifoliae DSM 12163] Length = 663 Score = 37.0 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + L +T +A V L G IE+ + V MTG Sbjct: 294 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 342 >gi|198242825|ref|YP_002215566.1| hypothetical protein SeD_A1761 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937341|gb|ACH74674.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623312|gb|EGE29657.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 297 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|62180149|ref|YP_216566.1| hypothetical protein SC1579 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127782|gb|AAX65485.1| putative phenazine biosynthesis protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714622|gb|EFZ06193.1| Phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 297 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|16760298|ref|NP_455915.1| hypothetical protein STY1484 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141935|ref|NP_805277.1| hypothetical protein t1491 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|167549951|ref|ZP_02343709.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168241122|ref|ZP_02666054.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462983|ref|ZP_02696914.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194444446|ref|YP_002040828.1| hypothetical protein SNSL254_A1696 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451804|ref|YP_002045621.1| hypothetical protein SeHA_C1759 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200391082|ref|ZP_03217693.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205352733|ref|YP_002226534.1| hypothetical protein SG1546 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856924|ref|YP_002243575.1| hypothetical protein SEN1474 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163642|ref|ZP_03349352.1| hypothetical protein Salmoneentericaenterica_27965 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426228|ref|ZP_03358978.1| hypothetical protein SentesTyphi_11689 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213648507|ref|ZP_03378560.1| hypothetical protein SentesTy_15199 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826360|ref|ZP_06545472.1| hypothetical protein Salmonellentericaenterica_13470 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25348929|pir||AF0671 conserved hypothetical protein STY1484 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502593|emb|CAD01743.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137564|gb|AAO69126.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|194403109|gb|ACF63331.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410108|gb|ACF70327.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634282|gb|EDX52634.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199603527|gb|EDZ02073.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205272514|emb|CAR37409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325135|gb|EDZ12974.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339600|gb|EDZ26364.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206708727|emb|CAR33053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627801|gb|EGE34144.1| Phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 297 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|322433091|ref|YP_004210340.1| 4-hydroxyproline epimerase [Acidobacterium sp. MP5ACTX9] gi|321165318|gb|ADW71022.1| 4-hydroxyproline epimerase [Acidobacterium sp. MP5ACTX9] Length = 319 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 48 QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI 105 +L+ A + N D + CG+G V++ L R+K ET G Sbjct: 64 GALLVEPL-SEDASAAVLFFN-DVGYLGMCGHGTIGVIKTLAYLGRIKPGQHKIETSVGD 121 Query: 106 LVAKENRDGSISV 118 + A + DGS++V Sbjct: 122 VSACLHEDGSVTV 134 >gi|56552841|ref|YP_163680.1| PhzF family phenazine biosynthesis protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56544415|gb|AAV90569.1| phenazine biosynthesis protein PhzF family [Zymomonas mobilis subsp. mobilis ZM4] Length = 295 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 40/288 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D D I ++ + ++ + N + + I D RI SE+ G Sbjct: 23 VVFDA----DEIPAETMQKIAREMN--LSETVFILKPTTPDADYRARIFTP-MSEMPFAG 75 Query: 79 N-----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS-VDMGEPILDWKLIPL 132 + + R+ + E GI+ + + + + M + ++ L Sbjct: 76 HPTVAAAHSVLARY-PDKANATLLRQECGIGIVPVEVIPSEAGTLLRMTQGAPKYRDSGL 134 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKH 190 +R + F VVS G P I + + + + Sbjct: 135 SRETVAKMLGCAESDLADSPFE----VVSTGVPWLIVELSRFEAISTLNPDQGLTARECK 190 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS--AACASVVASGCLHKT 242 + + GV + + +R R GV CGS + A+ +A Sbjct: 191 ALKACGVTV-FVERGDGGPVRIRV--RTFAPGEGVAEDPVCGSGNGSVAAYIAHHKHAGD 247 Query: 243 NRAVSVKMLG------GGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281 + G G + W + V + G+A G+L + Sbjct: 248 PAGSYIAEQGIEIGRDGEIHASWERDGENLRVRIGGQAAVSASGQLHL 295 >gi|259908940|ref|YP_002649296.1| pyruvate dehydrogenase [Erwinia pyrifoliae Ep1/96] gi|224964562|emb|CAX56075.1| Pyruvate dehydrogenase (Cytochrome) [Erwinia pyrifoliae Ep1/96] Length = 573 Score = 37.0 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + L +T +A V L G IE+ + V MTG Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 252 >gi|310767157|gb|ADP12107.1| pyruvate dehydrogenase [Erwinia sp. Ejp617] Length = 573 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + L +T +A V L G IE+ + V MTG Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 252 >gi|170085727|ref|XP_001874087.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651639|gb|EDR15879.1| predicted protein [Laccaria bicolor S238N-H82] Length = 295 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 51 LIHDFQ-----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETI 102 I Q D + IR +G EV CG+ + L S+ R S + F T Sbjct: 52 FIGPSQLSAENDTTAVYDIRYFAANGVEVSLCGHATLASAKVLFSQTGRASISVLQFHTP 111 Query: 103 R-GILVAKENRDGSISVD 119 G++ AK+ G + ++ Sbjct: 112 SEGVVAAKKVDGGLVEIE 129 >gi|313632681|gb|EFR99655.1| PhzF family phenazine biosynthesis protein [Listeria seeligeri FSL N1-067] Length = 287 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D ++D + ++ F++ + I + A+ +R G E CG+ + Sbjct: 23 DTYSTDEMQKIAKK--VGFNETVFICKSELAA--MKLRYFTP-GFETPLCGHATMGAIFA 77 Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139 L + + ET G+L + M + K I + + Sbjct: 78 LLNGNDDQQLEIETGAGVLQINYEAKNQ-KITMHQAA--PKFIDFNGDKEAL 126 >gi|323528430|ref|YP_004230582.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1001] gi|323385432|gb|ADX57522.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1001] Length = 326 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 44 THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99 D ++ L+ + D S A + N G CG+G +V L R+ Sbjct: 57 RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115 Query: 100 ETIRGILVAKENRDGSISV 118 ET G++ A N D S++V Sbjct: 116 ETPVGVVEATLNDDDSVAV 134 >gi|197250568|ref|YP_002146455.1| hypothetical protein SeAg_B1580 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214271|gb|ACH51668.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 297 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|168235692|ref|ZP_02660750.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738215|ref|YP_002114605.1| hypothetical protein SeSA_A1698 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713717|gb|ACF92938.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291092|gb|EDY30445.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 297 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|168229989|ref|ZP_02655047.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470340|ref|ZP_03076324.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456704|gb|EDX45543.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335430|gb|EDZ22194.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 297 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|15789604|ref|NP_279428.1| hypothetical protein VNG0332C [Halobacterium sp. NRC-1] gi|169235316|ref|YP_001688516.1| hypothetical protein OE1502R [Halobacterium salinarum R1] gi|10579960|gb|AAG18908.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726382|emb|CAP13163.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 301 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%) Query: 30 ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 +T D + A++ + + + A D +R +EV CG+ L Sbjct: 31 LTDDQMQAIAAE--LGASETAFLRPSDAA--DRRLRYFTPT-TEVDLCGHATIASHAHLY 85 Query: 90 SRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 T ET G+L + DG++ + P + Sbjct: 86 DDGALAAGEHTLETNVGVLDIEVAEDGTVWMAQNPPTV 123 >gi|300711982|ref|YP_003737796.1| phenazine biosynthesis protein PhzF family [Halalkalicoccus jeotgali B3] gi|299125665|gb|ADJ16004.1| phenazine biosynthesis protein PhzF family [Halalkalicoccus jeotgali B3] Length = 300 Score = 37.0 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 7/121 (5%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENR 112 D IR +EV CG+ L + T ET G+L + Sbjct: 51 SDSERADRRIRYFTPT-TEVDLCGHATIASHAHLFEAGTLDAGTHTLETNVGVLDIEVRS 109 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFV 171 DG++ ++ +P ++ + + DR + + P V S G P + V Sbjct: 110 DGTVWMEQDDPRIERVDPDYETVAESLSIDR---AALEDVGADLPLAVSSTGFPVLVVPV 166 Query: 172 E 172 Sbjct: 167 N 167 >gi|256829396|ref|YP_003158124.1| hypothetical protein Dbac_1615 [Desulfomicrobium baculatum DSM 4028] gi|256578572|gb|ACU89708.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM 4028] Length = 271 Score = 37.0 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNNH-VFMTGEAKKEWEGK 278 T CGS + A + G + V G + + + V++ G G+ Sbjct: 210 ET-GCGSGSLALALWLGRGKNLPTDLRVLQPSGSEIGVRADGDGPGVWIFGPVTLVARGE 268 >gi|197285998|ref|YP_002151870.1| hypothetical protein PMI2151 [Proteus mirabilis HI4320] gi|194683485|emb|CAR44285.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 287 Score = 37.0 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ +T++ A++ F + ++ D D + +G EV CG Sbjct: 25 VVLN----PPKLTTEQKIAIAQQ--VGFSETAFVYSGDD--TDFKVDFFTAEG-EVDFCG 75 Query: 79 NGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116 + V L +K ++ +T GIL N D + Sbjct: 76 HATLAVFFTLSSLKLLKPGDYSQKTKAGILTVTINHDNIV 115 >gi|204927486|ref|ZP_03218687.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322828|gb|EDZ08024.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 297 Score = 37.0 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGPHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|227824727|ref|ZP_03989559.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905226|gb|EEH91144.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 269 Score = 37.0 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%) Query: 74 VQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL--- 129 + CGN R + + + + FE T G E R + P D ++ Sbjct: 61 GEFCGNASRSAAAY-WAHIHGEEGVFEVTCSGAKAPMEARVK--KLGSTPPTYDAEIDLP 117 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +PL+ + + M V + VV G H ++F E+ + + Sbjct: 118 LPLSITEEAMR--------VGEKEVSLIHVVLPGIDHYVYFTEELDALSPMDYW 163 >gi|16764925|ref|NP_460540.1| hypothetical protein STM1581 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992938|ref|ZP_02574033.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168260235|ref|ZP_02682208.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197265748|ref|ZP_03165822.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20141911|sp|P40788|YDDE_SALTY RecName: Full=Uncharacterized isomerase yddE gi|16420104|gb|AAL20499.1| putative phenazine biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197244003|gb|EDY26623.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328971|gb|EDZ15735.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205350622|gb|EDZ37253.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246774|emb|CBG24588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993495|gb|ACY88380.1| hypothetical protein STM14_1909 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158109|emb|CBW17606.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912569|dbj|BAJ36543.1| hypothetical protein STMDT12_C16000 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224206|gb|EFX49269.1| Phenazine biosynthesis protein PhzF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129851|gb|ADX17281.1| Uncharacterized isomerase yddE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988468|gb|AEF07451.1| hypothetical protein STMUK_1550 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 297 Score = 37.0 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|238911816|ref|ZP_04655653.1| hypothetical protein SentesTe_11891 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 297 Score = 37.0 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|149689924|ref|XP_001503650.1| PREDICTED: similar to Phenazine biosynthesis-like domain-containing protein (MAWD-binding protein) (Unknown protein 32 from 2D-page of liver tissue) [Equus caballus] Length = 288 Score = 37.0 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + +V++S + + GG L I H + V + G EG L Sbjct: 230 TGSAHTVLSSYWSQQLGKKNMHACQCSCRGGELEISLHPDGRVDIRGSVAIVLEGTLT 287 >gi|188534291|ref|YP_001908088.1| pyruvate dehydrogenase [Erwinia tasmaniensis Et1/99] gi|188029333|emb|CAO97210.1| Pyruvate dehydrogenase (cytochrome) [Erwinia tasmaniensis Et1/99] Length = 573 Score = 36.7 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + L +T +A V L G IE+ + V MTG Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEYIEYDNPYDVGMTG 252 >gi|312960557|ref|ZP_07775063.1| pyruvate dehydrogenase (cytochrome) [Pseudomonas fluorescens WH6] gi|311285083|gb|EFQ63658.1| pyruvate dehydrogenase (cytochrome) [Pseudomonas fluorescens WH6] Length = 574 Score = 36.7 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%) Query: 221 LTAACGSAACAS-VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V V L G +EW + V MTG Sbjct: 204 VTLLCGSGCAGAHAQVVALADTLGAPV-VHALRGKEHVEWDNPFDVGMTG 252 >gi|262273970|ref|ZP_06051782.1| phenazine biosynthesis PhzF family protein [Grimontia hollisae CIP 101886] gi|262221780|gb|EEY73093.1| phenazine biosynthesis PhzF family protein [Grimontia hollisae CIP 101886] Length = 294 Score = 36.7 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 20/160 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V++ +N+++ + +++ D + + + Q A D +R EV CG Sbjct: 25 VVLNG----ENLSAKQMQSIAAD--LGYSETAFVLPSQKA--DYHVRFFTPT-EEVNLCG 75 Query: 79 NGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 + L +++ +T ET G+L +G I++ P SF Sbjct: 76 HATVGTFSTLYKVGKIEAGDYTQETGAGVLGVSITPEGRINMQQALPTF-------GNSF 128 Query: 137 DKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDD 174 + D + VS G I V ++ Sbjct: 129 NAEDIAPLLGLTAEDILATGLPVKSVSTGLWDVIVPVNNE 168 >gi|291299179|ref|YP_003510457.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] gi|290568399|gb|ADD41364.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] Length = 278 Score = 36.7 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D G +D L+T + + + D +D ++ + +EV CG Sbjct: 21 VVLDATG------ADDAAMLATAAEIGYSETAFVFPRPDGELD--VKYFSP-LAEVPFCG 71 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + R T T G++ +RD Sbjct: 72 HATIATAVAYAERHGVGELTLHTRAGVITVSTDRD 106 >gi|229174099|ref|ZP_04301635.1| Phenazine biosynthesis protein PhzF [Bacillus cereus MM3] gi|228609431|gb|EEK66717.1| Phenazine biosynthesis protein PhzF [Bacillus cereus MM3] Length = 299 Score = 36.7 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 15/143 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + ++ F++ + + A + +R G E+ CG+G + Sbjct: 29 DGLTEGEMQRIAEK--VGFNETSFVLSSEVAHI--RMRFFTP-GFEMDLCGHGTVGTIFA 83 Query: 88 LTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILD---WKLIPLARSFD 137 L R ++ + T ET GIL KEN + I + P LA S Sbjct: 84 LRERGLLEEKSNLTIETKAGILPIQIGVKENGEAFIKMRQAAPQFKEFTGSTEELAHSIG 143 Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160 + D P+ + N V+ Sbjct: 144 LEENDLDVSLPIVYGSTGNWTVI 166 >gi|213419795|ref|ZP_03352861.1| hypothetical protein Salmonentericaenterica_19233 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 247 Score = 36.7 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 2 KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 59 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 60 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 116 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 117 LLKPDVD 123 >gi|134100645|ref|YP_001106306.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL 2338] gi|291006720|ref|ZP_06564693.1| hypothetical protein SeryN2_19538 [Saccharopolyspora erythraea NRRL 2338] gi|133913268|emb|CAM03381.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL 2338] Length = 271 Score = 36.7 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271 ERG + G+ A A V +G + V+M G L + + + G A Sbjct: 93 ERGAAMRLLVGTGAGADV--AGLRGLADSGAQVRMSSGELPVMTIVDGRTCLLGSA 146 >gi|302530559|ref|ZP_07282901.1| phenazine biosynthesis PhzC/PhzF protein [Streptomyces sp. AA4] gi|302439454|gb|EFL11270.1| phenazine biosynthesis PhzC/PhzF protein [Streptomyces sp. AA4] Length = 266 Score = 36.7 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 48/220 (21%) Query: 73 EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 EV CG+ V L ++T+ G L + DG I +M P P Sbjct: 84 EVALCGHATIAVTHVLGGHQ-----VYDTLSGRLTCTK-ADGWI--EMDFPAD-----PP 130 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP- 191 + + + N F V A+ E DL G L+ Sbjct: 131 VETGEDLSHLLKAPAKFTGRARENLFAVLDSVE-AVRDAEPDLDALRATWTGRLILTAAG 189 Query: 192 ------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F GV + + + + + +A + + Sbjct: 190 DDFVSRFFGPGVGV------DEDPV----------------TGSAHCSLAPYWAGQLGKT 227 Query: 246 VSV----KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V GG + E D+ V + G+A G+L + Sbjct: 228 ALVGHQLSARGGTVRTEVRDD-RVLLRGQAVTVVSGELYV 266 >gi|322832158|ref|YP_004212185.1| thiamine pyrophosphate TPP-binding domain-containing protein [Rahnella sp. Y9602] gi|321167359|gb|ADW73058.1| thiamine pyrophosphate TPP-binding domain-containing protein [Rahnella sp. Y9602] Length = 573 Score = 36.7 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 22/49 (44%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + L +T +A V L G IEW + V MTG Sbjct: 204 ITMMCGSGCAGAHDEVIRLAETLKAPVVHALRGKEHIEWDNPYSVGMTG 252 >gi|7271069|emb|CAB77656.1| hypothetical protein [Candida albicans] Length = 302 Score = 36.7 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 101/317 (31%), Gaps = 67/317 (21%) Query: 8 FA--KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +GN + VI DN+T+ + ++ N + I + + IR Sbjct: 10 FTNVKY--LGNPVAVIYD---SDNLTTQEMQKIARWTN--LSETTFILTPKSSIAXYSIR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124 I G+E+ G+ L K K G ++ +E G + + + + P Sbjct: 63 IFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQII-QECGAGLVKISVEKTPN 117 Query: 125 LDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + +P SF DK+ + H ++ + P ++ G A+F + Sbjct: 118 NNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGK-PVLIDAGPKWAVFQLGS 176 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLR-----TWERGVGLTAACG 226 DL + + + + + + + +S++LR GV ACG Sbjct: 177 GKEVLDLNXDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV---GVAEDPACG 233 Query: 227 SAACAS-VVASGCLHKTNRAVSVK---------------------MLGGGLLIEWHDNNH 264 S + A + + ++ G L I Sbjct: 234 SGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTKNGDLSIHVG---- 289 Query: 265 VFMTGEAKKEWEGKLDI 281 G A +EG I Sbjct: 290 ----GHAITCFEGTYSI 302 >gi|309364768|emb|CAP24253.2| hypothetical protein CBG_03344 [Caenorhabditis briggsae AF16] Length = 362 Score = 36.7 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +R +EV CG+ L + + F+T G+L+ K++ G+ V+ Sbjct: 95 FSLRWFTP-KTEVPLCGHATLATSHVLFNEIGNVNTEIKFDTQSGVLIVKKDESGN--VE 151 Query: 120 MGEPILDWKLIPLARSFDKM 139 M P D I + + + Sbjct: 152 MDFPEYDLTSIKFNDTPNPL 171 >gi|268537066|ref|XP_002633669.1| Hypothetical protein CBG03344 [Caenorhabditis briggsae] Length = 318 Score = 36.7 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +R +EV CG+ L + + F+T G+L+ K++ G+ V+ Sbjct: 66 FSLRWFTP-KTEVPLCGHATLATSHVLFNEIGNVNTEIKFDTQSGVLIVKKDESGN--VE 122 Query: 120 MGEPILDWKLIPLARSFDKM 139 M P D I + + + Sbjct: 123 MDFPEYDLTSIKFNDTPNPL 142 >gi|46205714|ref|ZP_00209990.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 178 Score = 36.7 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 47 DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM 92 D ++ I FQ A + I+N DG+ + GNG+ R L + Sbjct: 67 DGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQG 110 >gi|238896376|ref|YP_002921114.1| translocation protein TolB precursor [Klebsiella pneumoniae NTUH-K2044] gi|330011187|ref|ZP_08307006.1| putative oligogalacturonate lyase [Klebsiella sp. MS 92-3] gi|238548696|dbj|BAH65047.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534241|gb|EGF60859.1| putative oligogalacturonate lyase [Klebsiella sp. MS 92-3] Length = 391 Score = 36.7 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 20/104 (19%) Query: 21 IDMRGCHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGS------ 72 +D+R + + L FD + H+ VDA + ++N DGS Sbjct: 173 VDLRSGESQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVK 232 Query: 73 ---EVQSC--------GNGMRCVVRFLTSRMKRKSFTFETIRGI 105 +SC G+ + V +L + R + F+ G+ Sbjct: 233 AHAPGESCTHEFWVPDGSAL-IYVSYLKGQQGRTIYRFDPESGV 275 >gi|300715122|ref|YP_003739925.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299060958|emb|CAX58065.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 366 Score = 36.7 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 12/70 (17%) Query: 229 ACASVVAS-GCLHKT------NRAVSVKMLGGGLLIEWHDNNHVFMTGE-----AKKEWE 276 A A +VA ++ +SV+ GG + ++ + +TG A+ + Sbjct: 288 ASACLVAGSVANGLARVGTARDQRLSVEHPGGEFSVLLQRDDRLQLTGAGLLRTARLIFA 347 Query: 277 GKLDIKTGKW 286 G++ I W Sbjct: 348 GEVMIPASVW 357 >gi|308376153|ref|ZP_07668205.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu008] gi|308352028|gb|EFP40879.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu008] Length = 561 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V V + Sbjct: 379 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 437 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 438 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 496 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 497 GHPDVFDALVVGVPDP 512 >gi|31560132|ref|NP_080977.2| phenazine biosynthesis-like domain-containing protein 1 [Mus musculus] gi|110282978|sp|Q9DCG6|PBLD1_MOUSE RecName: Full=Phenazine biosynthesis-like domain-containing protein 1 gi|18044106|gb|AAH19997.1| Phenazine biosynthesis-like protein domain containing [Mus musculus] gi|74180834|dbj|BAE25623.1| unnamed protein product [Mus musculus] gi|148700112|gb|EDL32059.1| mCG123414, isoform CRA_a [Mus musculus] Length = 288 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + +V++S K RA GG L I + V + G A EG L Sbjct: 230 TGSAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDGRVDIKGGAVIVLEGTLT 287 >gi|12833053|dbj|BAB22369.1| unnamed protein product [Mus musculus] Length = 288 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + +V++S K RA GG L I + V + G A EG L Sbjct: 230 TGSAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDGRVDIKGGAVIVLEGTLT 287 >gi|78045786|ref|YP_361961.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034216|emb|CAJ21861.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 575 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + V V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254 >gi|325925720|ref|ZP_08187096.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas perforans 91-118] gi|325543889|gb|EGD15296.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas perforans 91-118] Length = 575 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + V V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254 >gi|325922012|ref|ZP_08183816.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas gardneri ATCC 19865] gi|325547515|gb|EGD18565.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas gardneri ATCC 19865] Length = 575 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + A L T A V L G +EW + V MTG Sbjct: 206 ITLLCGSGCAGAHDAVVALADTLGAPIVHALRGKEYVEWENPFDVGMTG 254 >gi|289669879|ref|ZP_06490954.1| pyruvate dehydrogenase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 575 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + V V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWENPFDVGMTG 254 >gi|289664991|ref|ZP_06486572.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 575 Score = 36.3 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + V V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWENPFDVGMTG 254 >gi|325916205|ref|ZP_08178489.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas vesicatoria ATCC 35937] gi|325537625|gb|EGD09337.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas vesicatoria ATCC 35937] Length = 580 Score = 36.3 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + + V L G +EW + V MTG Sbjct: 211 VTLLCGSGCAGAHDAVVA-LAEMLGAPI-VHALRGKEYVEWENPFDVGMTG 259 >gi|259415244|ref|ZP_05739166.1| proline racemase [Silicibacter sp. TrichCH4B] gi|259349154|gb|EEW60908.1| proline racemase [Silicibacter sp. TrichCH4B] Length = 308 Score = 36.3 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 3/116 (2%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108 L+ + D + + D + + CG+G + L R+K ET G++ Sbjct: 60 LLVEPVDPECVTGVIYFDAD-AVLGMCGHGTIGLAVTLAHMGRIKVGIHKIETSAGVVTV 118 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + ++SV E + + G P V+ GN Sbjct: 119 ELHDANTVSVTNIESRRIHHAVSVEVPDHGTITGDMAYGGNWFFIADAPMEVTTGN 174 >gi|21240998|ref|NP_640580.1| pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306] gi|21106286|gb|AAM35116.1| pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306] Length = 575 Score = 36.3 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + V + V V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254 >gi|328470895|gb|EGF41806.1| hypothetical protein VP10329_08862 [Vibrio parahaemolyticus 10329] Length = 251 Score = 36.3 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 9/104 (8%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + D IR G E+ CG+G L S+ R ++ G + E DG Sbjct: 51 QSGSDYHIRWFTLAG-EINLCGHGSLGAGAALISKYHRNEVILQSSHGHITVSEL-DGMY 108 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 + M IPL D F P++ R+ VV Sbjct: 109 RILMPSWQAKPHAIPL-------DISGFSNRPIDAFTTRDLVVV 145 >gi|308378358|ref|ZP_07482305.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu009] gi|308352815|gb|EFP41666.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu009] Length = 534 Score = 36.3 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V V + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|149908377|ref|ZP_01897040.1| phenazine biosynthesis protein, PhzF family [Moritella sp. PE36] gi|149808540|gb|EDM68475.1| phenazine biosynthesis protein, PhzF family [Moritella sp. PE36] Length = 286 Score = 36.3 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 46/206 (22%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVV--RFLTSRMKRKSFTFETIRGILVAKENR 112 D VD + +EV CG+ + + + + T GIL + Sbjct: 51 SNDDEVDFEVSFFTTT-NEVDFCGHATLATFSIMYQMNLLTAGDYVQRTKAGILPVVIDS 109 Query: 113 DGSISVDMGEPI----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG +++D+ P ++ I D ++ VVS G I Sbjct: 110 DGQVTMDLQLPETLGGFSYQEIAPVLGIDSAILASTNL---------PIEVVSTGLADLI 160 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAAC 225 V + DL + +L + + +ER G TA+C Sbjct: 161 IPVP--IGQLDLINPNDL----------AITDFC--KKHDIVGFHVFERCAPGSLFTASC 206 Query: 226 -------------GSAACASVVASGC 238 + + + +A Sbjct: 207 RNFAPLFGIPEESATGSASGALACYL 232 >gi|322614832|gb|EFY11757.1| hypothetical protein SEEM315_01076 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619273|gb|EFY16153.1| hypothetical protein SEEM971_04233 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623085|gb|EFY19927.1| hypothetical protein SEEM973_05111 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628375|gb|EFY25163.1| hypothetical protein SEEM974_15560 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634781|gb|EFY31512.1| hypothetical protein SEEM201_17855 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638653|gb|EFY35348.1| hypothetical protein SEEM202_15575 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640957|gb|EFY37604.1| hypothetical protein SEEM954_06863 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645459|gb|EFY41987.1| hypothetical protein SEEM054_03894 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651656|gb|EFY48028.1| hypothetical protein SEEM675_02477 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654442|gb|EFY50764.1| hypothetical protein SEEM965_11104 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661284|gb|EFY57510.1| hypothetical protein SEEM19N_15707 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665058|gb|EFY61246.1| hypothetical protein SEEM801_01341 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667803|gb|EFY63963.1| hypothetical protein SEEM507_07759 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671786|gb|EFY67907.1| hypothetical protein SEEM877_03321 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677169|gb|EFY73233.1| hypothetical protein SEEM867_18174 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680169|gb|EFY76208.1| hypothetical protein SEEM180_05155 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685403|gb|EFY81399.1| hypothetical protein SEEM600_09774 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194711|gb|EFZ79900.1| hypothetical protein SEEM581_04114 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199918|gb|EFZ85006.1| hypothetical protein SEEM501_05441 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202483|gb|EFZ87524.1| hypothetical protein SEEM460_16242 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205785|gb|EFZ90748.1| hypothetical protein SEEM020_05304 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209804|gb|EFZ94726.1| hypothetical protein SEEM6152_06753 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218027|gb|EGA02741.1| hypothetical protein SEEM0077_06348 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219307|gb|EGA03797.1| hypothetical protein SEEM0047_22400 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231974|gb|EGA16081.1| hypothetical protein SEEM0052_16539 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234501|gb|EGA18588.1| hypothetical protein SEEM3312_15230 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237952|gb|EGA22011.1| hypothetical protein SEEM5258_02998 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243446|gb|EGA27465.1| hypothetical protein SEEM1156_03884 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249729|gb|EGA33634.1| hypothetical protein SEEM9199_03598 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253753|gb|EGA37580.1| hypothetical protein SEEM8282_12105 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254832|gb|EGA38628.1| hypothetical protein SEEM8283_18040 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260765|gb|EGA44369.1| hypothetical protein SEEM8284_20868 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266567|gb|EGA50054.1| hypothetical protein SEEM8285_01295 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271292|gb|EGA54718.1| hypothetical protein SEEM8287_05597 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 297 Score = 36.3 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109 + D IR EV CG+ ++ + + ++T + G + Sbjct: 52 KSEESDVHIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 E+ D I+++ G+P + PL ++ + + V S G+ + Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166 Query: 170 FVEDDLY 176 ++ D+ Sbjct: 167 LLKPDVD 173 >gi|188574846|ref|YP_001911775.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519298|gb|ACD57243.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 575 Score = 36.3 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + A L T A V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWENPFDVGMTG 254 >gi|58583823|ref|YP_202839.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625626|ref|YP_452998.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428417|gb|AAW77454.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369566|dbj|BAE70724.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 575 Score = 36.3 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + A L T A V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWENPFDVGMTG 254 >gi|293344976|ref|XP_002725875.1| PREDICTED: phenazine biosynthesis-like domain-containing protein-like [Rattus norvegicus] gi|293356795|ref|XP_002728992.1| PREDICTED: phenazine biosynthesis-like domain-containing protein-like [Rattus norvegicus] Length = 288 Score = 36.3 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 12/30 (40%) Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 GG L I + V M G A EG L Sbjct: 258 RGGELDISLRPDGRVDMKGGAAVVLEGMLT 287 >gi|163941035|ref|YP_001645919.1| PhzF family phenazine biosynthesis protein [Bacillus weihenstephanensis KBAB4] gi|163863232|gb|ABY44291.1| phenazine biosynthesis protein PhzF family [Bacillus weihenstephanensis KBAB4] Length = 299 Score = 36.3 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D +T + + ++ F++ + + A D IR G E C + + Sbjct: 29 DGLTEEEMQRIAEK--VGFNETAFVLSSEVA--DIRIRYFTP-GHENDLCVHATVGTIYA 83 Query: 88 LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120 L R + + T ET G+L N +G + M Sbjct: 84 LHKRGILGGKHNLTIETKAGVLPIHIDANENGETFIKM 121 >gi|167034878|ref|YP_001670109.1| PhzF family phenazine biosynthesis protein [Pseudomonas putida GB-1] gi|166861366|gb|ABY99773.1| phenazine biosynthesis protein PhzF family [Pseudomonas putida GB-1] Length = 262 Score = 36.3 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 39/222 (17%) Query: 73 EVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 EV CG+ L ++ ++ F T G L +G +++D + I Sbjct: 67 EVDLCGHATLASAYVLFEQLGEQTQVLRFNTRSGELRVSRGANGLLAMDFPAKQPEAVDI 126 Query: 131 P--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 P L ++ + + + + ++ P + D+ + + G Sbjct: 127 PAGLLQALGLNAAQALYRSDDYVVVIDDALLLDTLKPDFVALSAFDVRGIAVTAPGRGFD 186 Query: 189 KHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 F V ++ + + + + + +A + ++V Sbjct: 187 FVTRWFGPRVGVN------EDPV----------------TGSAHTSLAPVWAERLGKSV- 223 Query: 248 VKMLG--------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 LG G L E N V ++G A G + I Sbjct: 224 ---LGCEQGGARKGQLQCEVSGNGRVIISGRAALYLRGTVYI 262 >gi|307081692|ref|ZP_07490862.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu011] gi|308360619|gb|EFP49470.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu011] gi|323717785|gb|EGB26982.1| fatty-acid-CoA ligase FadD19 [Mycobacterium tuberculosis CDC1551A] Length = 525 Score = 36.3 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|119384189|ref|YP_915245.1| PhzF family phenazine biosynthesis protein [Paracoccus denitrificans PD1222] gi|119373956|gb|ABL69549.1| phenazine biosynthesis protein PhzF family [Paracoccus denitrificans PD1222] Length = 291 Score = 36.3 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D D+++++ + ++ + N + + L+ D RI E+ G Sbjct: 23 VVFDA----DDLSTEIMQRIAREMNL-SETVFLLRP--TGDADYRARIFTP-VRELPFAG 74 Query: 79 NGMRCVVRFLTSRMKRKSFTFETIRGI-LVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 + R + GI LV D + M + ++ +P+ Sbjct: 75 HPTIAAAHAFCGEQSRTPQSLTQECGIGLVPIRVEDDLYT--MTQATPQFRDVPVT---- 128 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK--HPMFSE 195 K + ++ L +VS G P + + D L + + H + + Sbjct: 129 KAELAEAISLQLDLLTNSPHQIVSTGVPWLLLELHDLQALASLRPDLGRIERICHGLGAA 188 Query: 196 GVNLSIARVTSLES--LDLRTW---ERGVGLTAACGS--AACASVVASGC----LHKTNR 244 G+ + A S + L +RT+ E GV CG+ A A+ +A+ Sbjct: 189 GLTV-FADSGSGATPRLRVRTFAPGE-GVAEDPVCGTGNGAIAAWIATHRDAVPRGGYLS 246 Query: 245 AVSVKM-LGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281 V+M G + W + + + G A G+LD+ Sbjct: 247 EQGVEMGRRGLVNAGWETTAEGLRITIGGAACIVLRGELDL 287 >gi|308374906|ref|ZP_07442019.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu007] gi|308348032|gb|EFP36883.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu007] Length = 548 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 336 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 394 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 395 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 453 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 454 GHPDVFDALVVGVPDP 469 >gi|294993633|ref|ZP_06799324.1| acyl-CoA synthetase [Mycobacterium tuberculosis 210] gi|326905355|gb|EGE52288.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis W-148] Length = 548 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|225011927|ref|ZP_03702365.1| phenazine biosynthesis protein PhzF family [Flavobacteria bacterium MS024-2A] gi|225004430|gb|EEG42402.1| phenazine biosynthesis protein PhzF family [Flavobacteria bacterium MS024-2A] Length = 262 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 49/241 (20%) Query: 59 SVDAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG 114 +R E++ CG+ L ++M +K FET+ G L Sbjct: 54 GERFHLRWFTP---EIEMDLCGHATLATAHCLKTQMNYPKKEIVFETLSGDLTVAMYD-- 108 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +M +P+A K ++ +I P R+ ++ E++ Sbjct: 109 ----EMYHLDF-PSRMPIASELPKSIKNSLNIMPKEVYKSRDYV--------LVYDTEEE 155 Query: 175 LYHYDLASFGNLLAKHPMFSEGV-------NLSIA--RVTSLESLDLRTWERGVGLTAAC 225 + + + + + GV N+ TS S+ E V Sbjct: 156 IASIQIDRQ--IFDQINLNPGGVIVTAKGDNVDFVSRFFTSQASIL----EDPV------ 203 Query: 226 GSAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + + + ++ + G LL + + V ++G+AK G L + Sbjct: 204 -TGSAHCSLVPFWAKRLDKDQLHAFQISERRGELLC-LNKKDRVILSGKAKTYATGTLYL 261 Query: 282 K 282 Sbjct: 262 D 262 >gi|15843125|ref|NP_338162.1| acyl-CoA synthetase [Mycobacterium tuberculosis CDC1551] gi|31794690|ref|NP_857183.1| acyl-CoA synthetase [Mycobacterium bovis AF2122/97] gi|57117119|ref|YP_177983.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Rv] gi|121639433|ref|YP_979657.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663378|ref|YP_001284901.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Ra] gi|148824721|ref|YP_001289475.1| acyl-CoA synthetase [Mycobacterium tuberculosis F11] gi|167969125|ref|ZP_02551402.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Ra] gi|215405559|ref|ZP_03417740.1| acyl-CoA synthetase [Mycobacterium tuberculosis 02_1987] gi|215413434|ref|ZP_03422111.1| acyl-CoA synthetase [Mycobacterium tuberculosis 94_M4241A] gi|215429013|ref|ZP_03426932.1| acyl-CoA synthetase [Mycobacterium tuberculosis T92] gi|218755296|ref|ZP_03534092.1| acyl-CoA synthetase [Mycobacterium tuberculosis GM 1503] gi|219559589|ref|ZP_03538665.1| acyl-CoA synthetase [Mycobacterium tuberculosis T17] gi|224991930|ref|YP_002646619.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800556|ref|YP_003033557.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 1435] gi|254552620|ref|ZP_05143067.1| acyl-CoA synthetase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198553|ref|ZP_05766044.1| acyl-CoA synthetase [Mycobacterium tuberculosis T46] gi|260202698|ref|ZP_05770189.1| acyl-CoA synthetase [Mycobacterium tuberculosis K85] gi|289440945|ref|ZP_06430689.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T46] gi|289555780|ref|ZP_06444990.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 605] gi|289571754|ref|ZP_06451981.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T17] gi|289572167|ref|ZP_06452394.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis K85] gi|289747352|ref|ZP_06506730.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 02_1987] gi|289752228|ref|ZP_06511606.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T92] gi|289763693|ref|ZP_06523071.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis GM 1503] gi|297636185|ref|ZP_06953965.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN 4207] gi|298526992|ref|ZP_07014401.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 94_M4241A] gi|306777865|ref|ZP_07416202.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu001] gi|306973983|ref|ZP_07486644.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu010] gi|308371375|ref|ZP_07424741.2| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu003] gi|313660509|ref|ZP_07817389.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN V2475] gi|81706952|sp|Q7D5D8|FAC19_MYCTU RecName: Full=Long-chain-fatty-acid--CoA ligase FadD19; Short=FACL; AltName: Full=Acyl-CoA synthetase gi|81712037|sp|Q7TWB7|FAC19_MYCBO RecName: Full=Long-chain-fatty-acid--CoA ligase FadD19; Short=FACL; AltName: Full=Acyl-CoA synthetase gi|13883473|gb|AAK47976.1| substrate--CoA ligase, putative [Mycobacterium tuberculosis CDC1551] gi|31620287|emb|CAD95730.1| PROBABLE FATTY-ACID-COA LIGASE FADD19 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE) [Mycobacterium bovis AF2122/97] gi|41352800|emb|CAE55608.1| PROBABLE FATTY-ACID-CoA LIGASE FADD19 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) [Mycobacterium tuberculosis H37Rv] gi|121495081|emb|CAL73567.1| Probable fatty-acid-CoA ligase fadD19 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507530|gb|ABQ75339.1| fatty-acid-CoA ligase FadD19 [Mycobacterium tuberculosis H37Ra] gi|148723248|gb|ABR07873.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis F11] gi|224775045|dbj|BAH27851.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322059|gb|ACT26662.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 1435] gi|289413864|gb|EFD11104.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T46] gi|289440412|gb|EFD22905.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 605] gi|289536598|gb|EFD41176.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis K85] gi|289545508|gb|EFD49156.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T17] gi|289687880|gb|EFD55368.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 02_1987] gi|289692815|gb|EFD60244.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T92] gi|289711199|gb|EFD75215.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis GM 1503] gi|298496786|gb|EFI32080.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 94_M4241A] gi|308213742|gb|EFO73141.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu001] gi|308328910|gb|EFP17761.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu003] gi|308356665|gb|EFP45516.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu010] gi|328460287|gb|AEB05710.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 4207] Length = 548 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|306790783|ref|ZP_07429105.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu004] gi|308332807|gb|EFP21658.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu004] Length = 549 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|297733179|ref|ZP_06962297.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN R506] Length = 546 Score = 36.3 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 333 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 391 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 392 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 450 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 451 GHPDVFDALVVGVPDP 466 >gi|260184430|ref|ZP_05761904.1| acyl-CoA synthetase [Mycobacterium tuberculosis CPHL_A] gi|289445107|ref|ZP_06434851.1| fatty-acid-CoA ligase fadD18 [Mycobacterium tuberculosis CPHL_A] gi|289418065|gb|EFD15266.1| fatty-acid-CoA ligase fadD18 [Mycobacterium tuberculosis CPHL_A] Length = 548 Score = 36.3 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|313497608|gb|ADR58974.1| Proline racemase [Pseudomonas putida BIRD-1] Length = 308 Score = 36.3 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 68/234 (29%), Gaps = 43/234 (18%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RF 87 D + D ++ L A+ + N G + CG+G +V ++ Sbjct: 43 DRWRRACLLEPRGNDVLVGALYCPPVSANATCGVIFFNNAG-YLNMCGHGTIGLVASLQY 101 Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSIS--------------VDMGEPILDWKLIPLA 133 L + +T G + A + DG+I+ VD+ + I Sbjct: 102 L-GLIAPGVHKIDTPVGQVSATLHDDGAITIGNVHSYRYRQQVAVDVPGHGVVHGDIAWG 160 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 ++ + + +++ + + +M ++ G + +F Sbjct: 161 GNWFFLVAEHGQRIELDNREVLTEYTWAM--------LKALEAQGITGENGAPIDHVELF 212 Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 ++ N + ++R CG+ A + K Sbjct: 213 ADDANADSRNFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255 >gi|166710188|ref|ZP_02241395.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 575 Score = 36.3 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + A L T A V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVSLADTLGAPVVHALRGKEYVEWENPFDVGMTG 254 >gi|308372665|ref|ZP_07429408.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu005] gi|308340299|gb|EFP29150.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu005] Length = 516 Score = 36.3 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|308373937|ref|ZP_07434195.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu006] gi|308343564|gb|EFP32415.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu006] Length = 518 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 333 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 391 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 392 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 450 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 451 GHPDVFDALVVGVPDP 466 >gi|289582249|ref|YP_003480715.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC 43099] gi|289531802|gb|ADD06153.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC 43099] Length = 302 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 4/116 (3%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115 D ++ EV CG+ L + + T ET G+L + DG Sbjct: 56 SDEADYRVQYFTPT-QEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLDIDVSDDG- 113 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +V M + + + L+ + V S G P + + Sbjct: 114 -TVWMTQNTPQVREVDLSYARAAEVLGVEQAALEGARDDIPLAVSSTGLPFLVVPI 168 >gi|215432487|ref|ZP_03430406.1| acyl-CoA synthetase [Mycobacterium tuberculosis EAS054] gi|289755644|ref|ZP_06515022.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis EAS054] gi|289696231|gb|EFD63660.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis EAS054] Length = 548 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|308369151|ref|ZP_07416733.2| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu002] gi|308328497|gb|EFP17348.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu002] Length = 515 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|239618454|ref|YP_002941776.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF 19.5.1] gi|239507285|gb|ACR80772.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF 19.5.1] Length = 278 Score = 36.3 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 GG LL+E + V++TG A +G L Sbjct: 245 RGGELLLEITGGDRVYITGNAVTILKGTL 273 >gi|325271980|ref|ZP_08138429.1| PhzF family phenazine biosynthesis protein [Pseudomonas sp. TJI-51] gi|324102881|gb|EGC00279.1| PhzF family phenazine biosynthesis protein [Pseudomonas sp. TJI-51] Length = 262 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 31/218 (14%) Query: 73 EVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 EV CG+ L ++ ++ F T G L DG +++D + + Sbjct: 67 EVDLCGHATLASAYVLFEQLGEQAQALRFNTRSGELRVSRGADGLLAMDFPAKQPLAEDM 126 Query: 131 P--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 P L ++ + + + + ++ P + D+ + + G Sbjct: 127 PQGLLQALGLSQAQALYRSDDYVVVIDDALLLDTLKPDFVALSAFDVRGIAVTAAGRGFD 186 Query: 189 KHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 F V ++ + + + + + +A + + V Sbjct: 187 FVTRWFGPNVGVN------EDPV----------------TGSAHTSLAPLWAERLGKQVL 224 Query: 248 VKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 GG LL E N V ++G A G + I Sbjct: 225 ACEQGGARKGQLLCEVPGNGRVIISGRAALYLRGTVYI 262 >gi|312961132|ref|ZP_07775637.1| proline racemase [Pseudomonas fluorescens WH6] gi|311284790|gb|EFQ63366.1| proline racemase [Pseudomonas fluorescens WH6] Length = 308 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 25/225 (11%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + D ++ L + N G CG+G ++ L Sbjct: 43 DQWRRACLLEPRGNDVLVGALYCAPVTPGATCGVIFFNNAGYLG-MCGHGTIGLMASLHH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 R++ T +T G + A + DG++++ + +P+ G Sbjct: 102 LGRIQPGVHTLDTPVGPVAATLHEDGAVTLRNVPAYRYRQHVPVQVPGHGTVHGDIAWGG 161 Query: 149 V------NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL--- 199 H + V + ++ + G L+ +F++ + Sbjct: 162 NWFFLVSEHGKTLDMSHVDALTDYTWAMLKALEDQGIGGAEGALIDHIELFADDAHADSR 221 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + ++R CG+ A + K Sbjct: 222 NFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255 >gi|307318307|ref|ZP_07597742.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti AK83] gi|306895989|gb|EFN26740.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti AK83] Length = 305 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 29/216 (13%) Query: 14 IGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 GN++ VI D RG ++ + A++T+ + ++ ++ ++ A +RI + Sbjct: 18 AGNQLAVIPDARG----LSEARMQAIATE--FGYSEVTVVLPPENPENTARVRIFTPT-T 70 Query: 73 EVQSCG--NGMRCVV----RFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125 EV G N V + + R + FE G++ DG ++ G I+ Sbjct: 71 EVPFAGHPNVGTAFVLGRQQEIFGRNPGGALRFEEKAGLVEVTLLGSDGIVT---GARIV 127 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + + + D + L RN P +S+G P ++ V D+ + Sbjct: 128 APQALQIGPAIDAATIAACASLRQDDLIDRNHPPVRISVGLPFSVAEVR------DVEAL 181 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWER 217 F E N+ SL L RT ER Sbjct: 182 SRARPNVSAFEE-ANIRYPLAEDSFSLFLYARTRER 216 >gi|289435213|ref|YP_003465085.1| phenazine biosynthesis protein, PhzF family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171457|emb|CBH28001.1| phenazine biosynthesis protein, PhzF family [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 292 Score = 35.9 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 D ++D + ++ F++ + I + +R G E CG+ + Sbjct: 28 DTYSTDEMQKIAKK--VGFNETVFI--CKSGLAAMKLRYFTP-GFETPLCGHATMGAIFA 82 Query: 88 LTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125 L + + ET G+L E ++ I++ P Sbjct: 83 LLNGNDDQQLEIETGAGVLQINYEAKNPKITMHQATPKF 121 >gi|26987993|ref|NP_743418.1| proline racemase [Pseudomonas putida KT2440] gi|24982709|gb|AAN66882.1|AE016316_7 epimerase, putative [Pseudomonas putida KT2440] Length = 308 Score = 35.9 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L A + N G + CG+G +V L Sbjct: 43 DRWRRACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 + +T G + A + DG+I+V Sbjct: 102 MGLITPGVHKIDTPVGQVSATLHEDGAITV 131 >gi|55732467|emb|CAH92934.1| hypothetical protein [Pongo abelii] Length = 254 Score = 35.9 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 GG L I + V +TG A EG L Sbjct: 225 RGGELGISLRPDGRVDITGSAAVVLEGTLT 254 >gi|15966521|ref|NP_386874.1| hypothetical protein SMc03984 [Sinorhizobium meliloti 1021] gi|307300442|ref|ZP_07580222.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti BL225C] gi|15075792|emb|CAC47347.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306904608|gb|EFN35192.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti BL225C] Length = 305 Score = 35.9 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%) Query: 14 IGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 GN++ VI D RG ++ + A++T+ + ++ + ++ A +RI + Sbjct: 18 AGNQLAVIPDARG----LSEARMQAIATE--FGYSEVTFVLPPENPENTARVRIFTPT-T 70 Query: 73 EVQSCG--NGMRCVV----RFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125 EV G N V + + R + FE G++ DG ++ G I+ Sbjct: 71 EVPFAGHPNVGTAFVLGRQQEIFGRNPGGALRFEEKAGLVEVTLLGSDGIVT---GARIV 127 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + + + D + L RN P +S+G P ++ V D+ + Sbjct: 128 APQALQIGPAIDAATIAACASLRQDDLIDRNHPPVRISVGLPFSVAEVR------DVEAL 181 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWER 217 F E N+ SL L RT ER Sbjct: 182 SRARPNVSAFEE-ANIRYPLAEDSFSLFLYARTRER 216 >gi|258623596|ref|ZP_05718590.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258584114|gb|EEW08869.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 289 Score = 35.9 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVV--RFLTSRMKRKSFTFETIRGILVAKENR 112 D D + G EV CG+ + + + T G+LV Sbjct: 52 SLDDEADFELSFFTTTG-EVDFCGHATLAAFSTMYQDGIITEGKYLQRTKAGLLVVTIEA 110 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFV 171 +G I +D+ P + ++ + + R P V S G P I V Sbjct: 111 NGHIVMDLKLPEFRGEFS------YEVISELIGLDSALLESTRLPIEVISTGLPDIIVPV 164 Query: 172 E 172 Sbjct: 165 P 165 >gi|161521803|ref|YP_001585230.1| proline racemase [Burkholderia multivorans ATCC 17616] gi|189352035|ref|YP_001947662.1| proline racemase [Burkholderia multivorans ATCC 17616] gi|160345853|gb|ABX18938.1| proline racemase [Burkholderia multivorans ATCC 17616] gi|189336057|dbj|BAG45126.1| proline racemase [Burkholderia multivorans ATCC 17616] Length = 348 Score = 35.9 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 48/268 (17%) Query: 31 TSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 T D++ L + Q+ L+ A ++ D + G+ CVV L Sbjct: 44 TDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFIVLQADKAHP-MSGSNCICVVTAL 102 Query: 89 TSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDK 138 + +T G++ A+ RDG +S+DM ++ + + Sbjct: 103 LELGMVPMQEPETTVVLDTPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPEFG 162 Query: 139 MDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-------- 189 G V + L + +S+ LA+ G L + Sbjct: 163 TLPVDIAFGGVYYALVDVDRIGLSI----------APDNARQLATHGVRLREIINRQVSV 212 Query: 190 -HPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAAC---ASVVASG 237 HP++ E +N +A V +D ++ R V + CG+ + A++ A G Sbjct: 213 QHPLYPE-IN-EVAYVMFRHRVDDTVYQTCTTLPPGR-VDRSP-CGTGSSANLATLAARG 268 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHV 265 +H + S +GG +E V Sbjct: 269 RVHVGDCLTSRSTIGGEFRVEMLGTTEV 296 >gi|86747329|ref|YP_483825.1| pyruvate dehydrogenase [Rhodopseudomonas palustris HaA2] gi|86570357|gb|ABD04914.1| pyruvate dehydrogenase (cytochrome) [Rhodopseudomonas palustris HaA2] Length = 576 Score = 35.9 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 218 GVGL-TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 G G T CG + L + ++ V LGG +E+ + V MTG Sbjct: 201 GAGRVTLFCGRGCAGAHAPLMALAEALKSPIVHALGGKEHVEYDNPYDVGMTG 253 >gi|21229684|ref|NP_635601.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766561|ref|YP_241323.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str. 8004] gi|188989623|ref|YP_001901633.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str. B100] gi|21111167|gb|AAM39525.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571893|gb|AAY47303.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str. 8004] gi|167731383|emb|CAP49558.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas campestris pv. campestris] Length = 575 Score = 35.9 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS + A L T A V L G +EW + V MTG Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPIVHALRGKEHVEWSNPFDVGMTG 254 >gi|325273670|ref|ZP_08139881.1| proline racemase [Pseudomonas sp. TJI-51] gi|324101197|gb|EGB98832.1| proline racemase [Pseudomonas sp. TJI-51] Length = 308 Score = 35.9 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88 D + D ++ L A + N G + CG+G +V L Sbjct: 43 DPWRRACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101 Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISV 118 + +T G + A + DG+++V Sbjct: 102 LGLIAPGVHKIDTPVGQVSATLHEDGAVTV 131 >gi|152971785|ref|YP_001336894.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956634|gb|ABR78664.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 391 Score = 35.9 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 20/104 (19%) Query: 21 IDMRGCHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGS------ 72 +D+R + + L FD + H+ VDA + ++N DGS Sbjct: 173 VDLRSGASQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVK 232 Query: 73 ---EVQSC--------GNGMRCVVRFLTSRMKRKSFTFETIRGI 105 +SC G+ + V +L + R + F+ G+ Sbjct: 233 AHAPGESCTHEFWVPDGSAL-IYVSYLKGQQGRTIYRFDPESGV 275 >gi|215447849|ref|ZP_03434601.1| acyl-CoA synthetase [Mycobacterium tuberculosis T85] gi|289759671|ref|ZP_06519049.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T85] gi|289715235|gb|EFD79247.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T85] Length = 548 Score = 35.9 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V V + Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|188577549|ref|YP_001914478.1| proline racemase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522001|gb|ACD59946.1| proline racemase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 237 Score = 35.9 bits (82), Expect = 7.2, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119 + N G CG+G VVR L R+ ET G + + DG++SVD Sbjct: 1 MIFFNNVGYLG-MCGHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 57 >gi|229590776|ref|YP_002872895.1| hypothetical protein PFLU3324 [Pseudomonas fluorescens SBW25] gi|229362642|emb|CAY49550.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 308 Score = 35.9 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%) Query: 33 DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89 D + D ++ L + + N G CG+G +V L Sbjct: 43 DKWRRACILEPRGNDVLVGALYCEPVTPGAICGVIFFNNAGYLG-MCGHGTIGLVASLHH 101 Query: 90 -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 R+ +T G++ A + DG++++ + +P+ Sbjct: 102 VGRIAPGMHRIDTPVGLVEATLHEDGAVTLGNVPAYRHRRQVPVEVP 148 >gi|15791210|ref|NP_281034.1| threonine synthase [Halobacterium sp. NRC-1] gi|169236966|ref|YP_001690166.1| threonine synthase [Halobacterium salinarum R1] gi|10581834|gb|AAG20514.1| threonine synthase [Halobacterium sp. NRC-1] gi|167728032|emb|CAP14820.1| threonine synthase [Halobacterium salinarum R1] Length = 415 Score = 35.9 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 209 SLDLRTWER-GVGLTAACG-SAACASVVASGCLHKTNRAVSVKMLGGGL 255 ++ +R ER GV AC + ++ +A+ + + V V + G + Sbjct: 120 TVGVRVAERLGVDR-LACASTGNTSAALAAYG-GRADTPVLVLLPAGKV 166 >gi|254366082|ref|ZP_04982126.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis str. Haarlem] gi|134151594|gb|EBA43639.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis str. Haarlem] Length = 548 Score = 35.9 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 44 THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89 T F ++ Q +RI ++ DG+EV+ G+GMR V+ + Sbjct: 335 TGFGGTSVVAAGQPHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K+ + TF TI G+ A + D +L + + +K+ + Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452 Query: 150 NHLFLRNPFVVSMGNP 165 H + + VV + +P Sbjct: 453 GHPDVFDALVVGVPDP 468 >gi|238749801|ref|ZP_04611306.1| hypothetical protein yrohd0001_31220 [Yersinia rohdei ATCC 43380] gi|238712456|gb|EEQ04669.1| hypothetical protein yrohd0001_31220 [Yersinia rohdei ATCC 43380] Length = 573 Score = 35.9 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 221 LTAACGSAACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CGS CA V V L G IEW + V MTG Sbjct: 204 ITLLCGSG-CADAHDEVVKLAELLQAPV-VHALRGKEHIEWDNPYSVGMTG 252 >gi|170768105|ref|ZP_02902558.1| phenazine biosynthesis protein PhzF family [Escherichia albertii TW07627] gi|170122871|gb|EDS91802.1| phenazine biosynthesis protein PhzF family [Escherichia albertii TW07627] Length = 297 Score = 35.9 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87 DN++ + ++ + H + L+H D IR EV CG+ + Sbjct: 28 DNLSEAQMQLIARELG-HSETAFLLH---SDDSDVRIRYFTPT-VEVPICGHAT-VAAHY 81 Query: 88 LTSRMKR--KSFTFET-IRG---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141 + S++ ++T + G ++V K+N D IS++ G P + PL Sbjct: 82 VRSQVLGLGNCTVWQTSLAGKHRVIVEKQNDDYRISLEQGTPGFEP---PLEGETRAAII 138 Query: 142 DRFHIGPVNHLFLRNPFVVSMG 163 + H+ + L V + G Sbjct: 139 NALHLTEDDILPGLPIQVATTG 160 >gi|312198699|ref|YP_004018760.1| hypothetical protein FraEuI1c_4900 [Frankia sp. EuI1c] gi|311230035|gb|ADP82890.1| hypothetical protein FraEuI1c_4900 [Frankia sp. EuI1c] Length = 111 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKLDIKTGKWIKKNE 291 VA + V V++ G L IE D HV TG A LD+ +W++ Sbjct: 43 AVAFQRADWVDTLVVVEL--GELDIECDDGTHVTFRTG-AVLV----LDLPEPRWLRNPG 95 Query: 292 D 292 D Sbjct: 96 D 96 >gi|311899634|dbj|BAJ32042.1| putative long-chain fatty-acid--CoA ligase [Kitasatospora setae KM-6054] Length = 606 Score = 35.9 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 20/74 (27%) Query: 212 LRTWERGVGLTAACGSAACASVVASG-----CLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 + +E G GLT + A+ V + R V G + I ++ V+ Sbjct: 377 MTVYE-GYGLTES------AAAVTANPPRRPKFGTVGRPV----PGSTVAI--AEDGEVW 423 Query: 267 MTGEAKKEWEGKLD 280 + G + G L+ Sbjct: 424 VKGP--GVFSGYLN 435 >gi|149203022|ref|ZP_01879993.1| Large exoprotein [Roseovarius sp. TM1035] gi|149143568|gb|EDM31604.1| Large exoprotein [Roseovarius sp. TM1035] Length = 5082 Score = 35.9 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 24/128 (18%) Query: 13 GIGNKIL-------VIDMRGCHDNITSDAINALSTDDNTHFDQIM------------LIH 53 G GN L VID +D I A N + T D + +I Sbjct: 4953 GAGNDFLAGGGRNDVIDGGTGNDTINGGAGNDIMT---GGADADIFVFSAFVDGELDVIT 5009 Query: 54 DFQDASVDAFIRIINCDGSEVQSC--GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 DF+D + IRI+N D EV GNG++ V L + I++ + Sbjct: 5010 DFEDGTDRLLIRIVNPDTGEVNISNGGNGLQGFVDALGITQADEGAQINVNGQIILLEGV 5069 Query: 112 RDGSISVD 119 + VD Sbjct: 5070 DASVLGVD 5077 >gi|170751247|ref|YP_001757507.1| thiamine pyrophosphate binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170657769|gb|ACB26824.1| thiamine pyrophosphate protein TPP binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 575 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +T CG + L + +A V LGG +EW + V MTG Sbjct: 206 VTLFCGRGCAGAHAELLQLAEALKAPVVHALGGKEHVEWDNPYDVGMTG 254 >gi|262193940|ref|YP_003265149.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM 14365] gi|262194066|ref|YP_003265275.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM 14365] gi|262077287|gb|ACY13256.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM 14365] gi|262077413|gb|ACY13382.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM 14365] Length = 259 Score = 35.5 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 LT A CA+V ++ V V MLGG Sbjct: 55 ADLTQA---GGCATVASAIRERLGGVDVIVHMLGG 86 >gi|296270910|ref|YP_003653542.1| phenazine biosynthesis protein PhzF family [Thermobispora bispora DSM 43833] gi|296093697|gb|ADG89649.1| phenazine biosynthesis protein PhzF family [Thermobispora bispora DSM 43833] Length = 278 Score = 35.5 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + A +RI G+E+ G+ + L R ET G + + R G Sbjct: 51 PAEQGGHARVRIFTP-GTELPFAGHPILGTAWVLAERDGLDRIVLETGSGPVTVEFERAG 109 Query: 115 --SISVDMGEPILDWKLIPLARSFD 137 S M +PI W P R+ + Sbjct: 110 DRLTSGRMRQPIPTWA--PFDRTEE 132 >gi|239980197|ref|ZP_04702721.1| putative long chain fatty acid:CoA ligase [Streptomyces albus J1074] gi|291452051|ref|ZP_06591441.1| acyl-CoA synthetase [Streptomyces albus J1074] gi|291355000|gb|EFE81902.1| acyl-CoA synthetase [Streptomyces albus J1074] Length = 650 Score = 35.5 bits (81), Expect = 9.5, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 12/70 (17%) Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + A+ V + L + GG + I D+ V + G + G D + Sbjct: 429 TETTAAAVVTPPLKPRLGTVGWP----LPGGRVKI--ADDGEVLLGGG--HVFSGYWDAE 480 Query: 283 TGKWIKKNED 292 +G+ + D Sbjct: 481 SGEITRGPVD 490 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.166 0.581 Lambda K H 0.267 0.0511 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,366,863,526 Number of Sequences: 14124377 Number of extensions: 313650267 Number of successful extensions: 801078 Number of sequences better than 10.0: 2595 Number of HSP's better than 10.0 without gapping: 3727 Number of HSP's successfully gapped in prelim test: 874 Number of HSP's that attempted gapping in prelim test: 780029 Number of HSP's gapped (non-prelim): 5154 length of query: 296 length of database: 4,842,793,630 effective HSP length: 138 effective length of query: 158 effective length of database: 2,893,629,604 effective search space: 457193477432 effective search space used: 457193477432 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 81 (35.5 bits)