BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
         (296 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 296

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV
Sbjct: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM
Sbjct: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL
Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH
Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296
           KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY
Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296


>gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 289

 Score =  404 bits (1038), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/288 (73%), Positives = 238/288 (82%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ SMV FAKMEGIGNKILV+DMR   DNIT +AIN LST+DN  FDQIM IH+ Q+   
Sbjct: 1   MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM
Sbjct: 61  DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDW+ IPLA+ FD  D  +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL
Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           + FG LL  + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS    
Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K
Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288


>gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
 gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
          Length = 294

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/290 (51%), Positives = 194/290 (66%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A   L+ D  T FDQIM IHD +      
Sbjct: 2   ASTTPFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGTAF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DG+  Q+CGNGMRCVV+ L +   +KSFTFET+ GIL A E+ DGSISVDMG 
Sbjct: 62  FIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDMGM 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L  
Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELDR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+    +T
Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTRRT 241

Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+VS+   GGG L +EW D++HV +TG A+ E+ G  D  TG W +  E
Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291


>gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894]
          Length = 301

 Score =  291 bits (746), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/291 (51%), Positives = 197/291 (67%), Gaps = 5/291 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +
Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSR 292


>gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512]
          Length = 351

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/291 (51%), Positives = 199/291 (68%), Gaps = 5/291 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 52  SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V++D+  YDLA 
Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +
Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSR 342


>gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652]
 gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652]
          Length = 301

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/291 (51%), Positives = 198/291 (68%), Gaps = 5/291 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSR 292


>gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1]
 gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1]
          Length = 293

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/289 (51%), Positives = 192/289 (66%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + +  FAKM G+GN I+V DMRG  D +  +A   L++D  THFDQIM IHD +    + 
Sbjct: 2   AELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTEN 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I IIN DGS  Q+CGNGMRCVV+ L +   R SFTFETI G+L A+E+ +G ISVDMG+
Sbjct: 62  YIEIINSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGK 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F    +    +GP++   L +P V SMGNPHAIF+VEDD Y YDL  
Sbjct: 122 PRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG +L  HP+F E  N++IARV S E L +RTWERG GLT ACGSAACA+ V++    +T
Sbjct: 182 FGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRT 241

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R V V + GG L I W D++HV MTG A+ E+ G+ D  TG W ++ E
Sbjct: 242 GRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETE 290


>gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 301

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 5/291 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            R V++ +        L IEW + ++HV MTG A+ EW G LD  TG W +
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSR 292


>gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
 gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
          Length = 292

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 193/283 (68%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           S V FAKM G+GN I+VIDMRG  D +TS+A  AL++ D T FDQIM IHD     VD  
Sbjct: 3   STVPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGVDYR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I I+N DGS  Q+CGNG RCVV+ L S   RKSFTF+T+ GIL A+E+ DG ISVDMG P
Sbjct: 63  IDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDMGRP 122

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IPLA  F    R    IGP++   L +P  V++GNPHA+F+V+DD++ YDL  F
Sbjct: 123 EFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDLERF 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  HP+F E  N+SIARV    +LD+RTWERG GLT ACGSAACA+ V++    +T 
Sbjct: 183 GPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTGRTG 242

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           R V+V + GG L IEW +NNHV MTG A+ E+ G++D  TG W
Sbjct: 243 RTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAW 285


>gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1]
 gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1]
          Length = 300

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 301

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/292 (51%), Positives = 197/292 (67%), Gaps = 5/292 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSRE 293


>gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19]
 gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19]
 gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28]
 gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90]
          Length = 303

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
 gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
          Length = 303

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3]
          Length = 297

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    
Sbjct: 1   MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDM
Sbjct: 61  DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDL
Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    
Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240

Query: 241 KTNRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           +T R V++ +        L IEW + ++HV MTG  + EW G+LD  TG W +
Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSR 293


>gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
          Length = 303

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 304

 Score =  288 bits (738), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 150/292 (51%), Positives = 196/292 (67%), Gaps = 5/292 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 5   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 65  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244

Query: 243 NRAVSVKMLG----GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++
Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSRE 296


>gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
          Length = 303

 Score =  288 bits (737), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
 gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
          Length = 294

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 150/290 (51%), Positives = 195/290 (67%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD +      
Sbjct: 2   ASTAPFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAY 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++ I+N DG+  Q+CGNGMRCVV+ L +   +K+FTFET  GIL A+E+ DG+ISVDMG 
Sbjct: 62  YVDILNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGM 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L  
Sbjct: 122 PHFGWQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+    +T
Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRT 241

Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+V++   GGG L +EW DN+HV +TG A+ E+ G  D  TG W +  E
Sbjct: 242 GRSVNLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291


>gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
          Length = 303

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 195/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVD+G P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021]
 gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021]
          Length = 306

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 150/281 (53%), Positives = 190/281 (67%), Gaps = 1/281 (0%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
            V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I
Sbjct: 9   QVQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWI 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P 
Sbjct: 69  DIVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPR 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG
Sbjct: 129 FGWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFG 188

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R
Sbjct: 189 PLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTER 248

Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
            V+V + GG L IEW + ++HV MTG A+ EW G +D  TG
Sbjct: 249 MVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTG 289


>gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
          Length = 303

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 194/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
 gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
          Length = 301

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/281 (53%), Positives = 190/281 (67%), Gaps = 1/281 (0%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
            V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I
Sbjct: 4   QVQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWI 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P 
Sbjct: 64  DIVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPR 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG
Sbjct: 124 FGWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R
Sbjct: 184 PLLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTER 243

Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
            V+V + GG L IEW + ++HV MTG A+ EW G +D  TG
Sbjct: 244 MVTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTG 284


>gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2]
 gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2]
          Length = 303

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/284 (51%), Positives = 194/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P   W
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653]
 gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653]
          Length = 303

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/281 (52%), Positives = 193/281 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++     T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSR 287


>gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
 gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
          Length = 303

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 194/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV  TG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33]
          Length = 303

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 194/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISV MG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 303

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 194/284 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    + P +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
 gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
          Length = 300

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/287 (53%), Positives = 197/287 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM G+GN+I+V DMRG  D IT +A   L+ D  T FDQIM IHD + A  D +I II
Sbjct: 7   FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG+E Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
           V + GG L IEW D++HV MTG A+ E+ G  D  TG+W +  ++D+
Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQNDK 293


>gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99]
          Length = 303

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/284 (51%), Positives = 193/284 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG  + E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQ 290


>gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
          Length = 303

 Score =  285 bits (729), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 145/284 (51%), Positives = 193/284 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 290


>gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 318

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 151/281 (53%), Positives = 195/281 (69%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM G+GN+I+V DMRG  D IT +A   L++D  T FDQIM IHD + A  D +I II
Sbjct: 25  FAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGTDNYIAII 84

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 85  NCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 144

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 145 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 204

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 205 EHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTRRTGRTVT 264

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +
Sbjct: 265 VNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSR 305


>gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
 gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
          Length = 294

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 145/281 (51%), Positives = 192/281 (68%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I IINCD
Sbjct: 1   MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW+ I
Sbjct: 61  GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL  H
Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+V +
Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQ 281


>gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419]
 gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419]
          Length = 292

 Score =  281 bits (719), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 186/275 (67%), Gaps = 1/275 (0%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GNKILV+DMRG  D +T  A   L+ D  T FDQIM IHD + A  DA+I I+N D
Sbjct: 1   MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS  Q+CGNG RCVV+ L +   +K+F F T+ G+L AKE+ DGSISVDMG+P   W  I
Sbjct: 61  GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA  F    R    IGP+    L +P VVSMGNPHAIF+VE+D+  YDL  FG LL  H
Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+     +T RAV+V +
Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240

Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
            GG L IEW + ++HV MTG A+ EW G LD  TG
Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTG 275


>gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
 gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/280 (52%), Positives = 188/280 (67%), Gaps = 1/280 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA+I 
Sbjct: 10  VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   +K+F F T+ G+L A+E+ DG ISVDMG P  
Sbjct: 70  IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+     +T+R 
Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG
Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATG 289


>gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42]
 gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42]
          Length = 301

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  ++  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            R V + +        L IEW + ++HV MTG A+ EW G+LD  TG W + +
Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDD 294


>gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 294

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/290 (52%), Positives = 198/290 (68%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD + +    
Sbjct: 2   ASTAPFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DG+  Q+CGNGMRCVV+ L +   +K FTFET+ GIL A+E+ DGSISVDMG 
Sbjct: 62  FIDILNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGT 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V++D++ Y+L  
Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+   ++T
Sbjct: 182 FGPLLENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRT 241

Query: 243 NRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+VS+   GGG L +EW D++HV +TG A+ E+ G  D   G W +  E
Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTE 291


>gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
 gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
          Length = 312

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/288 (50%), Positives = 195/288 (67%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GN+I+V D+RG    I+  A  AL+  + T FDQIM IHD +    DA IR
Sbjct: 21  VPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTDALIR 80

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IIN DGSE ++CGNG RCVV+ L S   ++ FTFET  GI++A E  DG I+VDMG P  
Sbjct: 81  IINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMGRPRF 140

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP++   L +P V SMGNPHAIF+V++D++ YDL  FG 
Sbjct: 141 GWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLERFGP 200

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++    +T+RA
Sbjct: 201 VLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGRTDRA 260

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
           V+V + GG LLI W +++ V MTG A   W G+LD  TG +++  +++
Sbjct: 261 VTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEE 308


>gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
 gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 149/294 (50%), Positives = 196/294 (66%), Gaps = 5/294 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I I+N DG++ Q+CGNG RCVV+ L +   +K FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P V+SMGNPHAIF+V+ D   YDLA 
Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+V S   L  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R V++ +      G L IEW +N +HV MTG A+ EW G +D  TG + +  E
Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQE 295


>gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
 gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
          Length = 299

 Score =  271 bits (694), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 146/287 (50%), Positives = 189/287 (65%), Gaps = 4/287 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+ NKILV+DMRG  D +T  A  AL+++  T FDQIM IHD +    DAFI 
Sbjct: 5   VEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+NCDG++ Q+CGNG RCVV+ L+S   + SFTF+T+ GIL A E+ DG ISVDMG P  
Sbjct: 65  ILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGLPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  FG 
Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACAS V++    +T R 
Sbjct: 185 LLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRK 244

Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V++ +        L I+W ++NHV MTG A+ EW G +D  TG W +
Sbjct: 245 VTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWAR 291


>gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
          Length = 304

 Score =  271 bits (693), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 193/283 (68%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GN+I+V+D+RG    I++ A  AL+ D  T FDQIM IHD +    DA++R
Sbjct: 13  VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IIN DGSE ++CGNG RCVV+ L +   R+ FTFET  GIL A E  DG I+VDMG P  
Sbjct: 73  IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F         IGP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG 
Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++    +T R 
Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V+V + GG LLI+W D++HV MTG A+  W G+LD  TG +++
Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVR 295


>gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
 gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
          Length = 300

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/287 (50%), Positives = 189/287 (65%), Gaps = 4/287 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DAFI 
Sbjct: 5   VEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDAFID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+NCDG++ Q+CGNG RCVV+ L+S   + +FTF+T+ GIL A E+ DG ISVDMG P  
Sbjct: 65  ILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGLPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  FG 
Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACA+ V++    +T R 
Sbjct: 185 LLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRTGRK 244

Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V++ +        L IEW ++NHV MTG A+ EW G +D  +G + +
Sbjct: 245 VTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSR 291


>gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4]
 gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4]
          Length = 303

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 5/291 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+GNKILV+DMRG  D +   A  AL+ +  THFDQIM IHD + A   A+I 
Sbjct: 5   VEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFAYID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IINCDG+  Q+CGNG RCVV+ L++    K+FTF+T+ GIL A E+ D ++SVDMG P+ 
Sbjct: 65  IINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGSPVF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPL+  F    R    IGP++   L +P V+SMGNPHA+F+V+ D   YDL  FG 
Sbjct: 125 DWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+++A+VTS  ++  RTWERG GLT ACGSAACA+ V++    +  R 
Sbjct: 185 LLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRAERK 244

Query: 246 VSVKMLGG----GLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V++ +        L IEW + + HV MTG A+ EW G+LD +TG W ++ +
Sbjct: 245 VTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQ 295


>gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
 gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
          Length = 288

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/284 (47%), Positives = 171/284 (60%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++ V F+KM GIGN+I+V D+RG  D +T +A  AL  D +T FDQ+M IHD  D + DA
Sbjct: 2   NTPVSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            IRI N DGS   +CGNG RCVV +L  R     F F      L AK   DG ISV+MG 
Sbjct: 62  TIRIYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGV 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  DW  IPL+  F         +GP+    L  P V ++GNPH +FF E+D   Y L  
Sbjct: 122 PRFDWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDK 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG +L  H +F +  N+SIA+VTS  ++ LRTWERG GLT ACGSAACA+VV +     T
Sbjct: 182 FGPMLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELT 241

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            R V+V + GG L IEW D+N + MTG A  E++G  D  TG W
Sbjct: 242 ERHVTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGW 285


>gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
 gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
          Length = 293

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 173/275 (62%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++   +  +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L   +   DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
            + + GG L IEW DN NHV MTG A+ E+EG+ D
Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFD 280


>gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
 gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
          Length = 297

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/275 (45%), Positives = 172/275 (62%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T+    A+++     +DQ+M++   +    +AF+RI 
Sbjct: 16  FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L   + +  G  SVDMG P   
Sbjct: 76  NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD++ YDLA FG L
Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDIHAYDLARFGPL 194

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R V
Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFD 289


>gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
 gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
          Length = 296

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 164/276 (59%), Gaps = 6/276 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI 
Sbjct: 9   FLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121
           N DGSE  +CGNG RCV   L     M R +     T ET  G++  K   + S +VDMG
Sbjct: 69  NTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMG 128

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L W  IPL   F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL 
Sbjct: 129 QPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLG 188

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L  
Sbjct: 189 RIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRM 248

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             RA  V + GG L IEW  ++HV MTG    E EG
Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEG 284


>gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1]
 gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1]
          Length = 296

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 130/276 (47%), Positives = 164/276 (59%), Gaps = 6/276 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI 
Sbjct: 9   FLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121
           N DGSE  +CGNG RCV   L     M R +     T ET  G++  K   + S +VDMG
Sbjct: 69  NTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMG 128

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL 
Sbjct: 129 QPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLG 188

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L  
Sbjct: 189 RIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRM 248

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             RA  V + GG L IEW  ++HV MTG    E EG
Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEG 284


>gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
 gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
          Length = 293

 Score =  234 bits (598), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 174/275 (63%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++   +  +DQ+ML+   + +  +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAA--HVPYDQLMLLQPARLSGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + S  ++   TFET  G+L   +   DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAAC++ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + +NHV MTG A  E+EG+ D
Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFD 280


>gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
 gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
          Length = 293

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/276 (45%), Positives = 166/276 (60%), Gaps = 4/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN+I+V+D+RG    +      A++ D  + FDQ+M++HD   A  DA +RI 
Sbjct: 9   FLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS--FTFETIRGILVAKENRDGSISVDMGEP 123
           N DGSE  +CGNG RCV   +     M R +   T ++  G+L          +VDMG P
Sbjct: 69  NTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGPP 128

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  IPLA  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDLA  
Sbjct: 129 RLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLARI 188

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  HP+F E  N+S+A+V   E + LR WERG GLT ACGSAACA++VA+  L  T 
Sbjct: 189 GPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLTG 248

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R   V + GG L+I+W +++HV MTG  + EWEG L
Sbjct: 249 RRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284


>gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
 gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
          Length = 293

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 175/275 (63%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++   +  +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R L +   ++  TFET  G+L   +   +G  +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD++ YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWV-DDIHAYDLGQFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A+ E+EG+ D
Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFD 280


>gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
 gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
          Length = 293

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 172/275 (62%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++   +  +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAA--HVPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L   +   DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW D +NHV MTG A+ E+EG+ D
Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFD 280


>gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
 gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
          Length = 293

 Score =  231 bits (590), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 127/275 (46%), Positives = 172/275 (62%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++   +  +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAA--HLPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   ++  TFET  G+L   +   DG  +VDMGEP   
Sbjct: 67  NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWV-DDIEAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + +R V
Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L I W + +NHV MTG A  E+EG+ D
Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFD 280


>gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46]
 gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46]
          Length = 293

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/276 (44%), Positives = 167/276 (60%), Gaps = 4/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN+I+V+D+R     +  +   A++ D  + FDQ+M++HD      DA +RI 
Sbjct: 9   FLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKR--KSFTFETIRGILVAKENRDGSISVDMGEP 123
           N DGSE  +CGNG RCV   + +   M R  +  T E+  G+L      D   +VDMG P
Sbjct: 69  NRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGPP 128

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  IPL+  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDL   
Sbjct: 129 HLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGRI 188

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  HP+F E  N+S+A+V + + + LR WERG GLT ACGSAACA++VA+  L  T 
Sbjct: 189 GPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLTG 248

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R  +V + GG L+I W +++HV MTG  + EWEG+ 
Sbjct: 249 RRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284


>gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
 gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
          Length = 285

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 162/275 (58%), Gaps = 6/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV   L     M R +     T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A  V + GG L IEW  ++HV MTG    E EG  
Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTF 275


>gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
 gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
          Length = 285

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 162/275 (58%), Gaps = 6/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV   L     M R +     T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              V + GG L IEW  ++HV MTG    E EG  
Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTF 275


>gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
 gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
          Length = 291

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/276 (46%), Positives = 172/276 (62%), Gaps = 4/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRI 66
           FAKM GIGN+I+V+DMR     +T D   A+ S      +DQ+M++   +    +AFI I
Sbjct: 9   FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPIL 125
            N DGSE  +CGNGMRCVVR +  +  + + TFET  G+L A +     + +VDMG P  
Sbjct: 69  YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP+++  L +P VVSMGNPHAIF+V DD+  YDLA FG 
Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWV-DDVNAYDLARFGP 187

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R 
Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           V + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFD 283


>gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001]
 gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001]
          Length = 296

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/278 (47%), Positives = 166/278 (59%), Gaps = 6/278 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G GN I+V+D+RG    +      A++ D ++ FDQ+M++HD      DAF+RI 
Sbjct: 9   FLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121
           N DGSE  +CGNG RCV   L     M R +     T ET  G++  K   D S +VDMG
Sbjct: 69  NTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDMG 128

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   +DL 
Sbjct: 129 QPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDLG 188

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  HP+F E  N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+  L  
Sbjct: 189 RIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLRM 248

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             RA  V + GG L IEW  ++HV MTG    E EG L
Sbjct: 249 IGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSL 286


>gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
 gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
          Length = 325

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 163/278 (58%), Gaps = 6/278 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G GN I+V+D+RG    +  +   A++ D  + FDQ+M++HD      DAF+RI 
Sbjct: 39  FLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRIY 98

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKS----FTFETIRGILVAKENRDGSISVDMG 121
           N DGSE  +CGNG RCV   +     M R +       ET  G+L  +   + + +VDMG
Sbjct: 99  NTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDMG 158

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPL+  F    R    IGP++   L +P  V+MGNPHA+FFVE D   +DLA
Sbjct: 159 RPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDLA 218

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  HP+F E  N+S+A+VT  E++ LR WERG GLT ACG+AACA+VVA+  L  
Sbjct: 219 RIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLRM 278

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             R  SV + GG L +EW  ++HV MTG      EG L
Sbjct: 279 IGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316


>gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
 gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
          Length = 288

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 125/274 (45%), Positives = 169/274 (61%), Gaps = 4/274 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +   A +A +      +DQ+M++   +    +AF+RI 
Sbjct: 9   FSKMNGIGNEIVVLDLR--DHPVAVSAADARAIASEVPYDQLMVLQPPRTPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGSE  +CGNGMRCV R + +     + TFET  G+L          +VDMG P L W
Sbjct: 67  NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  +DLA FG LL
Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAHDLARFGPLL 185

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+++A++   + + +RTWERGVGLT ACGSAACA+ VA+  L + NR V 
Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           + + GG L IEW   ++HV MTG A  E+EG+ D
Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFD 279


>gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
 gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
          Length = 289

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 122/277 (44%), Positives = 172/277 (62%), Gaps = 4/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A++      +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAA--RVPYDQLMVLQPPRLDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCVVR +  +  + S TFET  G+L   +     + +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VV+MGNPHA+F+V+ D+  YDL  FG L
Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + + GG L IEW + ++HV MTG A  E+EG+ + +
Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283


>gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 289

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 128/279 (45%), Positives = 175/279 (62%), Gaps = 1/279 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S + F KM G+GN+I+V+D+R      T+D   A++ D  +HFDQ+M++H  +    ++
Sbjct: 4   ASSLPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTES 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DGSE  +CGNGMRCV   L + + RK F  ET  G+L        SI+VDMGE
Sbjct: 64  LVRIYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGE 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P VV++GNPHAIF+V DD+  YDL  
Sbjct: 124 PRFGWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWV-DDVEAYDLGR 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  HP+F E  N+S+A+VTS  SL L+TWERG GLT ACGSAACA+ V++     T
Sbjct: 183 LGPMLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLT 242

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R V V + GG L + W DNN + MTG  + E+EG +D+
Sbjct: 243 ERTVDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDL 281


>gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
 gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
          Length = 290

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 171/275 (62%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +++    A++  +   +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +     + +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWV-DDIDAYDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +TNR V
Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFD 282


>gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
 gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
          Length = 289

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/275 (44%), Positives = 173/275 (62%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A+++     +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAS--RVPYDQMMVLQRPRFDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCVV  +  +  + S TFET  G+L   +     + +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHA+F+V++D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A++   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG+ +
Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFE 281


>gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
 gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
          Length = 290

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/275 (42%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T++   A+++     +DQ+M++   +    +AF+ I 
Sbjct: 9   FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L   +    G  +VDMG P   
Sbjct: 69  NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG G+T ACGSAACA+ VA+  L + +R V
Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GGGL IEW + ++HV MTG A  E+ G  D
Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFD 282


>gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
 gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
          Length = 284

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 169/281 (60%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM G+GNKI+V DMR    NIT  A+ AL+ +  THFDQIM IH       D  I I 
Sbjct: 5   FSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+ ++CGNG RCV+ +LT+    +SF  ET  GI+  K   +G ISV+MG P  D 
Sbjct: 65  NADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFDI 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P+A      +      GP     L++  +VS GN HAIFFVE ++ H  L  +G  L
Sbjct: 125 KNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA VTS  SL LRTWERG GLT ACG+AACAS VA+     T R ++
Sbjct: 180 EHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRIN 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V +LGG L I + +++H+ MTG  + E+ G L   TG + K
Sbjct: 240 VNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKK 280


>gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
 gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
          Length = 301

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 120/275 (43%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R    ++T++   A+++     +DQ+M++   +    +A +RI 
Sbjct: 20  FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L    N   G  +VDMG P   
Sbjct: 80  NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 198

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERGVGLT ACGSAAC + VA+  L +  R V
Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFD 293


>gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
 gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
          Length = 290

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 120/275 (43%), Positives = 167/275 (60%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+++D+R     +++    A++      +DQ+M++   +     AF+RI 
Sbjct: 9   FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +     + +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V DD+  YDL   G L
Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWV-DDIEAYDLERLGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A V     + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFD 282


>gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498]
          Length = 283

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/281 (45%), Positives = 169/281 (60%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      ++  I I 
Sbjct: 5   FSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEINFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+MG P  D 
Sbjct: 65  NSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFDA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P+AR     +      GP     L++  +VS+GN HA FF E+++ H  L  +G  L
Sbjct: 125 KNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +     T R + 
Sbjct: 180 ENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRGLTERCID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V +LGG L I + +++HV MTG  + E+ G L+  TG + K
Sbjct: 240 VNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKK 280


>gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1]
 gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1]
          Length = 304

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 124/289 (42%), Positives = 168/289 (58%), Gaps = 5/289 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59
           M S+   F KM G+GN  +V D R    +++ + I AL        FDQ++ + +   A 
Sbjct: 1   MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITV-ECSPAG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SV 118
            DAF+RI NCDGS+V +CGN  RCV R L     R     ET  G+LVA+   D  + +V
Sbjct: 60  ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V  D+  Y
Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWV-GDVEAY 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA  VA+  
Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
             +  R  +V + GG L IEW + + HV MTG  + E+EG++D+ T  W
Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAW 287


>gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3]
          Length = 284

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/281 (46%), Positives = 171/281 (60%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM G+GNKI+V DMR    NIT  AI  L+ +  THFDQIM IH    + +D  I I 
Sbjct: 5   FSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEIDFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+ ++CGNG RCVV +LT+    +SF  ET  GI+  K   +G ISV+MG P  D 
Sbjct: 65  NADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNMGCPNFDA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P+A      +      GP     L++  ++S+GN HAIFFVE+++ H  L  +G  L
Sbjct: 125 KNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA VTS  SL LRTWERGVGLT ACGSAACAS VA+     T R + 
Sbjct: 180 EHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRGLTERRID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           +   GG L I + +NNH+ MTG  + E+ G L+  TG + K
Sbjct: 240 INSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKK 280


>gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
 gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
          Length = 288

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 165/275 (60%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R   D +   A  A +      +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVLDLR--DDPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCV + + S     +  FE+  G+L         I +VDMG P   
Sbjct: 67  NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P  VSMGNPHAIF+V DD++ +DL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWV-DDVHAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +     + +RTWERGVGLT ACGSAACA+ VA+  L +  R V
Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L I+W + ++HV MTG A  E+EG LD
Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLD 280


>gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C]
          Length = 283

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 170/281 (60%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      ++  I I 
Sbjct: 5   FSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEINFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+MG P  + 
Sbjct: 65  NSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFNA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P+AR     +      GP     L++  +VS+GN HAIFFVE+++    L  +G  L
Sbjct: 125 KNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +     T R + 
Sbjct: 180 ENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRGLTERCID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V +LGG L I + +++H+ MTG  + E+ G L+  TG + K
Sbjct: 240 VNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKK 280


>gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse]
 gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse]
          Length = 283

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/281 (46%), Positives = 169/281 (60%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM+G+GN+I+V DMR     +T  AI AL+ D  THFDQIM IH       D  I I 
Sbjct: 5   FRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS  ++CGNG RCV+ +LT     +SF  ET  GI+  K   D  ISVDMG P  + 
Sbjct: 65  NADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFNA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P++R     +  +   GP     L++  +VS+GN HAIFFVED++    L  +G  L
Sbjct: 125 KEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+     T R + 
Sbjct: 180 EHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V + GG L I + ++NH+ MTG  K E+ G L+  TG + K
Sbjct: 240 VNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKK 280


>gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1]
          Length = 283

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/283 (44%), Positives = 171/283 (60%), Gaps = 5/283 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F+KM G+GN+I+V DMR    NIT  AI  L+ D  THFDQIM IH       D  I 
Sbjct: 3   IPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFRIE 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS  ++CGNG RCV+ +L++    KSF  ET  G++  +   +G I VDMG P L
Sbjct: 63  IWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCPHL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           + K +P++R     +  +   GP     L++  +VS+GN HAIFFV+ ++    L  +G 
Sbjct: 123 NAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKYGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L   P+F E  N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+     T R 
Sbjct: 178 KLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTERH 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           + V + GG L I + ++NH+ MTG+A+ E+ G  D  TG + K
Sbjct: 238 IDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEK 280


>gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771]
          Length = 227

 Score =  209 bits (531), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 146/216 (67%), Gaps = 5/216 (2%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           +CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW  IPLA  
Sbjct: 1   ACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEE 60

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA FG LL  HPMF E
Sbjct: 61  FHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPE 120

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG--- 252
             N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T R V + +     
Sbjct: 121 RANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKP 180

Query: 253 -GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
            G L IEW + ++HV MTG A+ EW G+LD  TG W
Sbjct: 181 PGTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLW 216


>gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
 gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
          Length = 321

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 5/298 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59
           M S+ V F KM G+GN  +V D R    N+  + I AL   D    FDQ++ + +     
Sbjct: 15  MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITV-ERSPLG 73

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISV 118
           VDAF+RI NCDGS+V +CGN  RCV R L         T ET  G+L A       +++V
Sbjct: 74  VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L+W  IPLA  F         IGP++  +L  P  +SMGNPHAIF+V+D +  +
Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVKD-VEAH 192

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G LL  HP+F EG N+S+A V +   + L+ WERG GLT ACG+AACA+ VA+  
Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
             K  R  ++ + GG + IEW + ++HV MTG  + E+EG++D+ T +W +    D+A
Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310


>gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
 gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
          Length = 270

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D R        D I A S       FDQ++ I D +D   DAF+R+ N 
Sbjct: 1   MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGEPIL 125
           DG  V++CGN +RCV  +L      K+   +T+ G   A+  R     G+ S+DMG+P L
Sbjct: 59  DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPL+   +   +    +GP +      P  VSMGNPH +FFV DD+   D+ + G+
Sbjct: 119 DWRDIPLSEEMNTA-KLELKVGPYDAPLYHTPVAVSMGNPHCVFFV-DDIATVDVKATGS 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F E VN+  A++   +++ +R WERG G+T ACG+ ACA++VA+     T RA
Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG L I W +N+HV MTG  + E+EG L
Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270


>gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
 gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
          Length = 290

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 158/272 (58%), Gaps = 2/272 (0%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM GIGN+IL++D+RG    +T     A++      FDQ+M++ D +     AF+ I N 
Sbjct: 11  KMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFNA 70

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS+  +CGNG RCV   L     R     ET  G L  +   +   SV+MG P L    
Sbjct: 71  DGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAAE 130

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+R            GP +   L+NP VV+MGNPHAIFFVE D+  YDLA+ G +L  
Sbjct: 131 IPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLEH 189

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
            P+F E  N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+     T R  +V 
Sbjct: 190 DPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATVA 249

Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           + GG L I W + ++ V MTG    E+E +LD
Sbjct: 250 LPGGELDIFWRESDDMVVMTGPVAFEFETRLD 281


>gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
 gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
          Length = 303

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 172/297 (57%), Gaps = 7/297 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M S    F KM G+GN  +V D R     +  +AI AL   +    FDQ++ + +     
Sbjct: 1   MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITV-ERSSLG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SIS 117
           VDAF+RI N DGSEV +CGN  RC+ R L     +   T ET  G+L A  + DG  S++
Sbjct: 60  VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAF-DADGPRSVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V DD+  
Sbjct: 119 VDMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWV-DDVEA 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y+L   G LL  HP+F E  N+S+A V   + + ++ WERGVGLT ACG+AACA  VA+ 
Sbjct: 178 YELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAA 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
              +T+R  ++ + GG + IEW + +NHV M+G  + E+EG++D+ T  W K    D
Sbjct: 238 RDGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294


>gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
 gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
          Length = 282

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/282 (45%), Positives = 171/282 (60%), Gaps = 8/282 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-FQDASVDAFIRI 66
           F+KM G+GNKI+V D+R    NIT  AI AL+++  THFDQIM IH   QDA  D  I I
Sbjct: 5   FSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQDA--DFRIEI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCV+ +L +     +F  ET  GI+  K   DG ISVDMG P L+
Sbjct: 63  WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  +VS+GN HAIFF+E ++ +  L  +G  
Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            V +  G L I + D+ H+ MTG  + E+ G  +  TG + K
Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKK 279


>gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
 gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
          Length = 283

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 169/283 (59%), Gaps = 5/283 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM+G+GN+I+V DMR     +T  AI ALS D   HFDQIM I +      D  I I 
Sbjct: 5   FSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+ ++CGNG RCV+ +LT     ++F  E   GI+  K   D  ISVDMG P  + 
Sbjct: 65  NADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFNA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  L
Sbjct: 125 KEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA +TS +SL+LRTWERG GLT ACGSAACA  VA+     T R + 
Sbjct: 180 EHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           V + GG L I + +++H+ MTG  K ++ G L+  TG + K N
Sbjct: 240 VNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDN 282


>gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
 gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
          Length = 291

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 112/274 (40%), Positives = 159/274 (58%), Gaps = 10/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+D R     +T+ A  A++ D +T    DQI+L+   +  + D F+R
Sbjct: 5   FLKMHGLGNDFVVLDARRDPLPLTTAAARAIA-DRHTGVGCDQIVLLEPPRHPAADLFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   +     R   T ET  G+L  +   DGS++VDMG   L
Sbjct: 64  ILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGPARL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA + D + R     GP     L++   V MGNPHA+FFV DD    DLA+ G 
Sbjct: 124 DWTQIPLAAAHDTL-RVPAGAGP-----LQDACCVGMGNPHAVFFV-DDAEAVDLATLGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F +  N+ +A+V + + + +R WERG G+T ACGS +CA++VA+     T RA
Sbjct: 177 VLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRA 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +++ GG L IEWH + HV MTG     + G+L
Sbjct: 237 AWIELDGGRLWIEWHGDGHVLMTGPVATAFTGEL 270


>gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
 gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
          Length = 317

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/277 (40%), Positives = 157/277 (56%), Gaps = 14/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN+ILV+D+R   +++ + A  AL+      FDQ M+++  + A   AF+RI+
Sbjct: 41  FVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRIL 100

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGSE  +CGNG RC+  +   R+  +   FE+  G+L      DG ++VDMG P L W
Sbjct: 101 NSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLGW 160

Query: 128 KLIPLARSFDKMDRDRFH----IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             IPLAR        +      +GP +        +VSMGNPHA+FFV  D    D+ + 
Sbjct: 161 DAIPLARPVADTSAVQIEGFASLGPAS--------MVSMGNPHAVFFVP-DANAVDVEAL 211

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F E  N+S A+V S + + L  WERG G T ACG+AACA+ V++    +T 
Sbjct: 212 GATLEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTG 271

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           R V V + GG L+I+W   + HV MTG    E+ G L
Sbjct: 272 RKVRVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTL 308


>gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
 gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
          Length = 283

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 166/281 (59%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM+G+GN+I+VIDMR     +T  AI ALS D   HFDQIM IH       D  I I 
Sbjct: 5   FSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS  ++CGNG RCVV +L      + F  ET  GI+      D  ISVDMG P  + 
Sbjct: 65  NADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFNA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  L
Sbjct: 125 KEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E  N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+     T R + 
Sbjct: 180 EHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V +  G L I + +++HV MTG  K ++ G L   TG + K
Sbjct: 240 VNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKK 280


>gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1]
 gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1]
          Length = 283

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/281 (44%), Positives = 168/281 (59%), Gaps = 5/281 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM+G+GN+I+V DMR     +T  AI +L+ D  T+FDQIM IH       D  I I 
Sbjct: 5   FSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEIW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS   +CGNG RCV+ +LT     + F  ET  GI+  K   D  ISVDMG P  + 
Sbjct: 65  NADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFNA 124

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P++R     +      GP     LR+  +VS+GN HAIFFVE+D+ +  L  +G+ L
Sbjct: 125 KEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSKL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F +  N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+     T R + 
Sbjct: 180 EHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNID 239

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           V + GG L I + +++H+ MTG  K  + G L+  TG + K
Sbjct: 240 VNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKK 280


>gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
 gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
          Length = 293

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/283 (42%), Positives = 166/283 (58%), Gaps = 9/283 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFIRII 67
           M G+GN  +V D R     +T D I  L   D  H   FDQ++ + +     VDAF+RI 
Sbjct: 1   MNGLGNDFVVWDAREKPLRLTKDQIAKLG--DREHGIGFDQMITV-ERSTCGVDAFMRIH 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DG +V +CGN  RC+ R L     +   T ET  G+L A +     +++VDMG+P L+
Sbjct: 58  NSDGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLN 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V+D +  YDLA  G L
Sbjct: 118 WDQIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVKD-VEAYDLARVGPL 176

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L +HP+F EG N+S+A +     + ++ WERG GLT ACG+AACA  VA+    KT R  
Sbjct: 177 LERHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKT 236

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           ++ + GG + IEW + + HV MTG  + E+EG++DI+T  W K
Sbjct: 237 TIHLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRK 279


>gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
 gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
          Length = 291

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 169/290 (58%), Gaps = 9/290 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA--FIRII 67
           M G+GN  +V D R     +T   I  +   +    FDQ++ +   + AS DA  F+RI 
Sbjct: 1   MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITV---EPASSDAYAFMRIH 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-KENRDGSISVDMGEPILD 126
           N DGSEV +CGN  RC+ R L       S T +T  G+L+A   + +  +SVDMG P L+
Sbjct: 58  NRDGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLE 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA  F         IGP++   L +P VV++GNPHAIF+V DD+  +DL  FG L
Sbjct: 118 WDQIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWV-DDIEAHDLERFGPL 176

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HPMF E  N+S+A++     + L+ WERGVGLT ACG+AACA+ VA+    +  R  
Sbjct: 177 LECHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKC 236

Query: 247 SVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
           +V + GG L IEW  DN+H+ MTGE   E+EG+L++ T  + K    D A
Sbjct: 237 TVHLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286


>gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
 gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
          Length = 269

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/271 (39%), Positives = 156/271 (57%), Gaps = 7/271 (2%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM G GN   + D R      T++ I  ++ D     DQ++ +   +DA+ D F+RI N 
Sbjct: 5   KMNGAGNAFAIFDARSTAFTPTTEQIRKIAAD--LKADQVIAME--RDATKDVFMRIWNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGSEV +CGN  RCV   +     +   T +T   +L A    +G I+VDMG P + W+ 
Sbjct: 61  DGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQMGWED 120

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D    D   IGP++   L  P VVSMGNPHA+FFV+D +  YD+ + G L+  
Sbjct: 121 IPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVKD-VAAYDIPAIGPLVEW 178

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F +G N+  A+V   E++ LR WER  GLT ACG+ ACA++V +     T R   + 
Sbjct: 179 HPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRKARMI 238

Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           + GG L I+W + ++HV+MTG  + E+E ++
Sbjct: 239 LDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269


>gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
 gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
          Length = 288

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 3/273 (1%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           +M G GN+ILV+D+RG    +T+    A++      FDQ+M +H+ + A  +AF+RI N 
Sbjct: 12  RMNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNN 71

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGNG RCV   L  + +  +   ET  G + +    +   SVDMG P LDW+ 
Sbjct: 72  DGSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRA 131

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPLA   +  D  R  + P           V+MGNPHA+FFVED      L + G  +  
Sbjct: 132 IPLAG--EGADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVEDP-AAIALEALGPPIET 188

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F E VN+S A V +   + LR WERG G+T ACGSAACA++VA+     + R   V+
Sbjct: 189 HPLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVR 248

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           + GG L I+W  ++HV MTG  + E+  +LD +
Sbjct: 249 LPGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281


>gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
 gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
          Length = 280

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/279 (38%), Positives = 156/279 (55%), Gaps = 10/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R      ++  + A         FDQ++ I     AS DAF+R+
Sbjct: 5   FLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMRV 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122
            N DG  V++CGN +RCV  +L           +T+ G   AK    + + G +SVDMG 
Sbjct: 63  WNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+   +  +R    +GP++      P  VSMGNPH +FFVED +   D+  
Sbjct: 123 PRLAWTQIPLSEEMNT-ERLELQVGPIDAPLYHTPCAVSMGNPHVVFFVED-VAAVDVER 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+L+  HP+F EGVN+  A+V    ++ +R WERG G+T ACG+ ACA++VA      +
Sbjct: 181 TGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGLS 240

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +R  +V M GG L I W   ++HV MTG  + E+EG+L+
Sbjct: 241 DRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279


>gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506]
 gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506]
          Length = 293

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/273 (41%), Positives = 159/273 (58%), Gaps = 3/273 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN+I+V+D+R     +      AL+ +D   FDQIM ++  +     AF+RII
Sbjct: 9   FVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRII 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGSE  +CGNG RC+  +   R       FE++ G+L      +G I+ DMG P   W
Sbjct: 69  NADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFGW 127

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPLA             GP     LR P VV++GNPHAIF+V D +   DL  +G  L
Sbjct: 128 HDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWVHD-IEAVDLGRYGPEL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+S A+V S + + L+ WERG GLT ACGSAACA+ V++  +  T R V+
Sbjct: 187 EHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRVT 246

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           V + GG L+I+W + ++H+ MTG A  E++G+L
Sbjct: 247 VTLPGGDLVIDWRESDDHILMTGPAVFEFDGRL 279


>gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
 gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
          Length = 290

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/277 (39%), Positives = 153/277 (55%), Gaps = 14/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN+ILV+D+R     + + A  AL+      FDQ M+++  +     AF+RI+
Sbjct: 14  FVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRIL 73

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS   +CGNG RC+      R       FE+  G+L      DG + VDMG P  DW
Sbjct: 74  NSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFDW 133

Query: 128 KLIPLARSFDKMDR---DRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           + IPLAR   +  +     F  +GP +        +VSMGNPHA+FFV  D    D+   
Sbjct: 134 RDIPLARDVAETAQVIVPGFEALGPTS--------LVSMGNPHAVFFVP-DANAVDVEKL 184

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F E  N+S A +T+ + + L  WERG G T ACG+AACA+ V++    +T 
Sbjct: 185 GAALEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTG 244

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           R+V+V + GG L I W + + HV MTG  + E+ G L
Sbjct: 245 RSVTVTLPGGDLEISWREADGHVLMTGPVEHEFSGTL 281


>gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 297

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 149/279 (53%), Gaps = 9/279 (3%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM G+GN I+V+D+RG    I++    A+      HFDQ+M++HD       AF+RI N 
Sbjct: 11  KMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYNI 70

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGS   +CGNG RCV   L     R       ET  G L   +  +   SVDMG+P   W
Sbjct: 71  DGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFAW 130

Query: 128 KLIPLARSFDK-----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             IPLA          + RD   + PV+   LR   +V+MGNPHA+ FV D     DLA 
Sbjct: 131 DAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFVADQ-DACDLAL 189

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  HP+F +  N+SIA V S + + L+ WERG G T ACGSAACA++VA+      
Sbjct: 190 VGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGLA 249

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            R   + + GG L I W   ++HV MTG    E+  +LD
Sbjct: 250 AREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLD 288


>gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
          Length = 277

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 161/284 (56%), Gaps = 13/284 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDA 58
           MQ+S   F KM G GN  +V++         +D + AL+ D  T   FDQ++ I     A
Sbjct: 1   MQAS-TPFVKMNGAGNDFVVVNALETPFTPDADRVRALA-DRRTGEGFDQLIAIEPSDRA 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             DAF+R+ N DG  V++CGN +RCV   L       S T +T+ G  +A+      ++V
Sbjct: 59  --DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTV 116

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176
           DMG P LDW+ IPLA + D    +   IGP++   +  P  VSMGNPH +FF +  DD++
Sbjct: 117 DMGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFTDRLDDVF 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G+++  HP+F +GVN+  A V + + + LR WERG GLT ACG+ ACA++VA+
Sbjct: 176 ---VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAA 232

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
                T R+ +V + GG L I+W +   HV MTG  + E  G+L
Sbjct: 233 SRRGLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276


>gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
          Length = 291

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 169/293 (57%), Gaps = 5/293 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59
           M  S + F KM G+GN   V+D R     +T+D  +A++  +     DQ++++     A 
Sbjct: 1   MAFSHISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D F+RI+N DGSEV +CGN  RCV   + + + R+  T ET  G+L A+ + DG ++VD
Sbjct: 60  -DVFMRILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P   W+ IPLA+           I   +   L  P V ++GNPHAIF+V D +  YD
Sbjct: 119 MGVPRFGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWVAD-VDAYD 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA+FG  L   P+F E  N+S+A V   +++ LR WERG G+T ACG+AACA+ V++   
Sbjct: 178 LATFGGALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAART 237

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            +T R+V +++ GG + IEW  D++H+ MTG    E+EG L +  G      E
Sbjct: 238 GRTGRSVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGGSLTVARE 290


>gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510]
 gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510]
          Length = 283

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 151/286 (52%), Gaps = 9/286 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G+GN  +VID R      ++  + A++        DQ +++        DAF+R
Sbjct: 4   EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG E  +CGN  RCV   L     R   +F+T  G+L A    +G I+VDMG P L
Sbjct: 64  IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA   D +      +  V H     P  V+MGNPHA+FFV DD     L   G 
Sbjct: 124 DWAAIPLAAPADTL-----RVETVAHGGFAAPVAVNMGNPHAVFFV-DDAEAVPLDEVGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +   HP F E  N+  A+V S  ++ +R WERG G+T ACGS +CA++VA+     T+R 
Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWIKK 289
             + + GG L IEW + + V MTG     + G+L  ++ +G+ + +
Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELVSR 283


>gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
 gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
          Length = 288

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 146/279 (52%), Gaps = 8/279 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQDASVD 61
           F KM G+GN  +VI       + T + I A++             DQ++ I   +     
Sbjct: 5   FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A++R  N DG    +CGNG RCV   L     + +  F+T+ G L      D  ++VDMG
Sbjct: 65  AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P LDW  IPLA   +  +R    +GP++   +  P  VSMGNPH +FFV+  +      
Sbjct: 125 PPGLDWTQIPLAEEMNT-ERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+L+  HP+F EGVN+  A + S + + L+ WERG GLT ACG+ ACA+ VA+     
Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           T+R   V+   G L IEW +++ HV MTG    E+ GKL
Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282


>gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 280

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 155/274 (56%), Gaps = 10/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+D+R     +T     A++ D  T    DQ+++I   +    DA++ 
Sbjct: 9   FLKMHGLGNDFVVVDVRRSGFVLTPAMARAIA-DRRTGLGCDQVVVIETARSGLSDAWMS 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGS   +CGN  RCV   L  +        ET  G+L A+   D  ++VDMG   L
Sbjct: 68  LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPLA+  D +     H+G +    L +P  VSMGNPHA+FFV DD+   DLA+ G 
Sbjct: 128 DWREIPLAKPVDTL-----HMG-IGIGSLTDPVGVSMGNPHAVFFV-DDVAAIDLAALGP 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F E  N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+     T R 
Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             V + GG L IEW  ++HV MTG      EG+L
Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274


>gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
 gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 153/279 (54%), Gaps = 13/279 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D   DA + I
Sbjct: 25  FLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPCADATMLI 84

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VDMG   LD
Sbjct: 85  YNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVDMGPARLD 144

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA + D +     H+G ++   L +P  VSMGNPHA+FFV DD    +LA  G  
Sbjct: 145 WREIPLAEAVDTL-----HLG-ISAGPLADPVGVSMGNPHAVFFV-DDAEAVNLAQLGRG 197

Query: 187 LAKHPMFSEGVNLSIARVTS-----LESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           L  H +F E  N+ +A+V +     +  + +R WERG G+T ACG+ ACA++VA+     
Sbjct: 198 LEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLVAAARRGL 257

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 258 SPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296


>gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
 gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
          Length = 288

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 145/282 (51%), Gaps = 17/282 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
            S +  F KM G+GN  +++D RG H  +T   I AL+        DQ++ +        
Sbjct: 17  HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D F+R  N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDM
Sbjct: 77  DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
           GEP L+W+ +PL    D +           HL L  +P   SMGNPHA FFVED    + 
Sbjct: 137 GEPRLNWQDVPLVAEMDTL-----------HLPLEGDPAAASMGNPHATFFVED----FA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
             S G  L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +   
Sbjct: 182 RLSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARR 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               R   V++ GG L IEW  NNHV MTG A   +EG +D+
Sbjct: 242 GLVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDL 283


>gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 284

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/279 (37%), Positives = 150/279 (53%), Gaps = 13/279 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D+  DA + I
Sbjct: 8   FLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSCADAQMLI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VDMG   LD
Sbjct: 68  YNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVDMGPARLD 127

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA + D +     H+G +    L +P  VSMGNPHA+FFV DD     LA  G  
Sbjct: 128 WREIPLAEAMDTL-----HLG-ITAGPLSDPVGVSMGNPHAVFFV-DDAEAVPLAQLGRG 180

Query: 187 LAKHPMFSEGVNLSIARVTSLESLD-----LRTWERGVGLTAACGSAACASVVASGCLHK 241
           L  H +F E  N+ +A+V S    D     +R WER  G+T ACG+ ACA++VA+     
Sbjct: 181 LEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLVAAARRGL 240

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 241 SPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279


>gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
 gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
          Length = 277

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/283 (38%), Positives = 153/283 (54%), Gaps = 18/283 (6%)

Query: 1   MQS---SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ 56
           MQS   + + F KM G+GN  +V+D RG    +T   + AL+  +    FDQ+ +I D  
Sbjct: 1   MQSNSDTGLPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAIITDGG 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A  D  +   N DGS   +CGN  RC+ R+   R  + S T  T RG+L+A+E  +G  
Sbjct: 61  NA--DLHLTFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLT 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV+MG P+ DW  IPLA   D +        P+    L  P   SMGNPH  FFV DD+ 
Sbjct: 119 SVNMGHPMTDWDEIPLAEDVDTLAL------PI----LGAPTATSMGNPHCTFFV-DDVM 167

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DLA+ G  +  HP+F E  N+  A+V   + + +R WERG G+T A GS++CA+ VA+
Sbjct: 168 AIDLAAIGPTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAA 227

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T   V + + GG L +EW D+  V+MTG     + G L
Sbjct: 228 YRRGLTRAKVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVL 269


>gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12]
          Length = 270

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 146/279 (52%), Gaps = 17/279 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +  F KM G+GN  +++D R  H ++T   I AL+        DQ++ +        D F
Sbjct: 2   LTSFRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADVF 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDMGEP
Sbjct: 62  VRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGEP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            L+W+ +PLA   D +           HL L  +P   SMGNPHA FFVED    +   S
Sbjct: 122 RLNWQDVPLAAEMDTL-----------HLPLEGDPAAASMGNPHATFFVED----FVRLS 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +      
Sbjct: 167 QGHALEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLI 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R   V++ GG L IEW  NNHV MTG A   +EG +D+
Sbjct: 227 GRVCEVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDL 265


>gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
 gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
          Length = 275

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 156/282 (55%), Gaps = 14/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62
           ++DF KM G+GN  +V D R       S +  A   D  T    DQ++++     A  DA
Sbjct: 2   LIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--DA 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+RI N DGSE  +CGN  RCV   L  R    +   ET+ G+L+A+ N +G I +DMG+
Sbjct: 60  FMRIYNPDGSESGACGNATRCVADLL-HRDGIAAPCMETVAGLLLAEINGNG-ICIDMGQ 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W+ +PLAR  D +        P+    L+ P   SMGNPHA FFV D L   D+  
Sbjct: 118 PGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFVAD-LAELDIPV 170

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +HP+F E  N+  A++ S   + LR WERG GLT ACG+ ACA++V +      
Sbjct: 171 TGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGLA 230

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
            R   V++ GG LLI W + + HV MTG A   + G++ +++
Sbjct: 231 EREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272


>gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
 gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
          Length = 277

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 142/274 (51%), Gaps = 10/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +V+D R    D   + A            DQI+LI   +D    AF+RI
Sbjct: 7   FLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGSE  +CGN  RCV   L      +  T  T  G+L A+      + VDMG P L 
Sbjct: 65  LNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKLG 124

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA   D +   R  +GPV     +NP   SMGNPHA FFV DDL H  + + G  
Sbjct: 125 WEDIPLAEPADTLSL-RLALGPV-----QNPAACSMGNPHATFFV-DDLTHLQIETIGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R  
Sbjct: 178 LEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARRA 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 238 EIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 278

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D  
Sbjct: 1   MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG P
Sbjct: 61  VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            LDW+ +PLAR+ D +           HL L  +P   SMGNPHA FF+ DD+   D   
Sbjct: 121 ALDWRDVPLARAADTL-----------HLPLAGDPAAASMGNPHATFFL-DDMLDLDPVV 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +      
Sbjct: 169 AGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 228

Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLD 280
            R  +V M GG L + W       +  HV MTG A   + G  D
Sbjct: 229 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFD 272


>gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 279

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 20/284 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D  
Sbjct: 2   MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG P
Sbjct: 62  VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            LDW+ +PLAR+ D +           HL L  +P   SMGNPHA FF+ DD+   D   
Sbjct: 122 ALDWRDVPLARAADTL-----------HLPLAGDPAAASMGNPHATFFL-DDMLDLDPVV 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +      
Sbjct: 170 AGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 229

Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLD 280
            R  +V M GG L + W       +  HV MTG A   + G  D
Sbjct: 230 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFD 273


>gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
 gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
          Length = 286

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/278 (38%), Positives = 150/278 (53%), Gaps = 21/278 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           +M G GN+ILV+D+RG    +      A++      FDQ+M +HD ++   DAF+RI N 
Sbjct: 12  RMNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNV 71

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGNG RCV  +  +R  ++     T    +  +   +   +VDMG P LDW+ 
Sbjct: 72  DGSLSGACGNGARCVA-YALARDGKERLRLATDAARIETRREAETVFTVDMGRPRLDWRE 130

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDLYHYDLA 181
           IPL+R  D              + L  P          VSMGNPHA+FFV D L    L 
Sbjct: 131 IPLSREAD-----------TRTVALEPPVAGAPTQFSAVSMGNPHAVFFVPDALA-TPLE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP+F +  N+S A++ +   + LR WERG G T ACGSAACA++VA+     
Sbjct: 179 TLGPKLEHHPLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGF 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T R   V++ GG L IEW D++HV MTG  + E+E  L
Sbjct: 239 TERRARVRLPGGDLHIEWRDDDHVMMTGPVEFEFETML 276


>gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
 gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
          Length = 281

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 150/277 (54%), Gaps = 15/277 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
            + + F KM G+GN  +V+D RG    +T+  + A++       FDQ+ +I D  DA  D
Sbjct: 16  QTFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVISDTPDA--D 73

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RC+ R +  +  +++ T  T RG L A +   G  SV+MG
Sbjct: 74  LHLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMG 133

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW  IPLA   D +        P++     +P    MGNPH  FFV DD    DLA
Sbjct: 134 QPQLDWHEIPLAEQIDTLQL------PIDG----SPTATGMGNPHCTFFV-DDAEAVDLA 182

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP+F +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 183 MRGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGL 242

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           T R V++ + GG L I+W D+  ++MTG     ++G+
Sbjct: 243 TGRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQ 278


>gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
 gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
          Length = 299

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 160/299 (53%), Gaps = 27/299 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQD 57
           M      + +M G GN  +V+       + T D + AL+ D  T    FDQ++ +   + 
Sbjct: 5   MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALA-DPATGLGGFDQLIGVEPSET 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE--NRDGS 115
           A  DAF+R+ N DGS V++CGN +RCV   L     ++    +T+ G   A+    R GS
Sbjct: 64  A--DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGS 121

Query: 116 ------------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
                       ++VDMG P LDW  +PL+   D    +   +GP++   L  P  VSMG
Sbjct: 122 GDPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMG 180

Query: 164 NPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           NPH +FF +  DD +   +   G+L+  HP+F EGVN+  A V + + + LR WERG GL
Sbjct: 181 NPHVVFFTDRLDDAF---VRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGL 237

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA++VAS     T+R  +V + GG L I+W + + HVFMTG  + E  G L
Sbjct: 238 TLACGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296


>gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
 gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
          Length = 277

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 140/274 (51%), Gaps = 10/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +V+D R    D   + A            DQI+LI    D    AF+RI
Sbjct: 7   FLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--PDDGAAAFMRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGSE  +CGN  RCV   L      +     T  G+L A+      + VDMG P L 
Sbjct: 65  LNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKLG 124

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA   D +   R  +GPV     +NP   SMGNPHA FFV DDL H  + + G  
Sbjct: 125 WEDIPLAEPADTLSL-RLALGPV-----QNPAACSMGNPHATFFV-DDLTHLQIETIGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R  
Sbjct: 178 LEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARRA 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 238 EIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
 gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
          Length = 281

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/275 (38%), Positives = 155/275 (56%), Gaps = 9/275 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           + +M G GN   ++D RG    ++++A+  ++   N   DQ++ + +      D F+RI 
Sbjct: 3   YYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSANA--DQVVSLENSMRG--DIFMRIW 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE--NRDGSISVDMGEPIL 125
           N  GSEV +CGN  RCV   +     R +   ET  G+L+A    N D  ISVDMG P+L
Sbjct: 59  NNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSPLL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA   D    D   IGP++  +L+ P  V+MGNPH +FFV D+L   D+   G 
Sbjct: 119 KWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFV-DELDAVDVVGIGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  H MF E  N+  A+V   + + LR WER  GLT ACG+ ACA+VVA       NR+
Sbjct: 177 LIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLNRS 236

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V + GG L I+W + ++HV MTG  + E + ++
Sbjct: 237 CTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEI 271


>gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45]
 gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45]
          Length = 279

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 150/278 (53%), Gaps = 16/278 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F KM G+GN  +V+D R     +T   + A++       FDQ+ LI   +  + D
Sbjct: 8   SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALI---EPGAGD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS   +CGN  RC+ R+L  +  R   T  T RG L+A++   G  SV+MG
Sbjct: 65  ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW  IPLAR  D ++       P++      P    MGNPH  FFVED     DL 
Sbjct: 125 QPQLDWHEIPLAREMDTLEL------PIDG----APTATGMGNPHCTFFVED-AEAVDLT 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           SFG +   HP++ E  N+ +A +   + + +R WERG GLT A GS++CA+ VA+     
Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T R V++++ GG L ++W ++  V+MTG     ++G  
Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF 270


>gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
 gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
          Length = 277

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/276 (38%), Positives = 149/276 (53%), Gaps = 12/276 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V++ R      T+  + A++ D  T    DQ++ +   + A  DA +R
Sbjct: 9   FLKMNGLGNDFVVVETRSAPFEPTAAQVRAIA-DRATGIGCDQLIAVDPAEGA--DAHVR 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG EV +CGNG RCV   L     +     ET  G LVA    +  +SVDMG P L
Sbjct: 66  FWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSVDMGPPRL 125

Query: 126 DWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +W  IPLA   D   +D   +H    +   +  P  VSMGNPH +FFV D       A  
Sbjct: 126 EWNEIPLAEPHDTRALDVVLYH----HADLMAPPGCVSMGNPHVVFFVPD-AEQAPAAEA 180

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  HP+F E VN+  A+V + + + LR WERG GLT ACG+ ACA++VA+       
Sbjct: 181 GPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASRRGLIG 240

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R  ++++ GG L +EW  + HV MTG A  +++G+L
Sbjct: 241 RHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276


>gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
 gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
          Length = 293

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/282 (40%), Positives = 158/282 (56%), Gaps = 10/282 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+D+R     + +DAI     D       DQ++ I   +    D F+ 
Sbjct: 8   FLKMNGLGNDFVVLDLR-REPFVLTDAIARAIADREKGIGCDQLITIEPARQGG-DVFMG 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG  V++CGN  RC+ + +     + + T ET+ G  VA       I+VDMG P L
Sbjct: 66  IRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVDMGAPRL 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPL+  F         IGP+    + +P VV++GNPHA+FFVE D+   DL   G 
Sbjct: 126 DWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAIDLERSGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+S+A+V S   + +RTWERG GLT ACG+AACA+ VA+    KT R 
Sbjct: 185 MLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRRRKTERK 244

Query: 246 VSVKMLGGGLLIEW--HDNN---HVFMTGEAKKEWEGKLDIK 282
           ++V + GG L +EW   D N   HV MTG    ++EG LD +
Sbjct: 245 ITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286


>gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
 gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
          Length = 282

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/272 (38%), Positives = 151/272 (55%), Gaps = 9/272 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDASVDAFIRIIN 68
           M+GIGN  +++D+RG    +  DA   L+   +    DQ++ L+ + + A+    + I N
Sbjct: 17  MDGIGNAFIIVDLRG-GGTLGEDAARGLAEAAEGVRIDQVIGLVAEGEGAA----MTIFN 71

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+   L          F T  G + A    D  ++VDMG P L W+
Sbjct: 72  RDGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQ 131

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA + +        +GP+++  L  P  VSMGNPH +FFVED +    L  FG L+ 
Sbjct: 132 DIPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVED-VAAQRLDRFGPLIE 190

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP+F EG N+S+A V     + LRTWERG GLT ACG+AACA++V++    +T R   V
Sbjct: 191 NHPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADV 250

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            + GG L I W + ++HV MTG+ +    G+L
Sbjct: 251 TLPGGTLDISWREADDHVLMTGDIRALRTGRL 282


>gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
 gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
          Length = 279

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/276 (40%), Positives = 150/276 (54%), Gaps = 10/276 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +VID        T D I AL+   +   FDQ++ I   + A  DAF+R+
Sbjct: 8   FIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA--DAFMRV 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS V++CGN +RCV   L         T +T  G   A    D  ++VDMG P LD
Sbjct: 66  WNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVDMGRPRLD 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHYDLASFG 184
           W  +PLA   D    +   +GP++   L  P  VSMGNPH +FF   +DD +   +   G
Sbjct: 126 WTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQDDGF---VTGSG 181

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           +L+  HP+F EGVN+  A V   + + LR WERG GLT ACG+ ACA+ VA+     T+R
Sbjct: 182 SLVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARRGLTDR 241

Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             +V + GG L+I+W    +HV MTG  + E  G L
Sbjct: 242 KATVVVDGGELVIDWDPATDHVLMTGPVEIERTGAL 277


>gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
 gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
          Length = 276

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/281 (37%), Positives = 143/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D R     ++   I ALS        DQ + + +  +A  D F
Sbjct: 1   MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITL-ERPEAGADVF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSE ++CGN  RCV   L +   R      T+RG L  +    G+I  DMG P
Sbjct: 60  MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W+ +PLA + D       H+ P++   + +P   SMGNPHA FFVE  L   D  + 
Sbjct: 120 SLAWQEVPLAEAMDTT-----HL-PIDLGAVADPAACSMGNPHATFFVE-TLEGLDWQAL 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L   HP+  +  N+  A V S E + L  WERG G T ACGS ACA++V +       
Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
           R   + + GG L +EW   +NHV M G     + G+ D  T
Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273


>gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 269

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/275 (38%), Positives = 148/275 (53%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     +++    AL+        DQ++L+   + A  D  +
Sbjct: 3   IPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DVRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DG EV++CGN  R V  +L    +      ET+ GI+ A  + D  ISV MG P 
Sbjct: 61  RIFNPDGGEVEACGNASRAVGLYLGGDKR-----IETLGGIIAASTS-DTGISVAMGRPR 114

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA   D +        PV    L  P  V++GNPH IFFV D  +  DLA  G
Sbjct: 115 FGWDEIPLAYPMDTLTM------PVGWEDLVEPVAVNVGNPHVIFFVPDT-HSVDLARLG 167

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+   P+F   +N+++A +T  ++LDLR WER  GLT ACG+ ACAS +A+     T R
Sbjct: 168 PLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLTGR 227

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V+V + GG L+IEW D + + MTG A   +EG  
Sbjct: 228 RVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262


>gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
 gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
          Length = 281

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 152/279 (54%), Gaps = 19/279 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDAS 59
           SS + F KM G+GN  +V+D RG    +  D   A++  D      FDQ+ ++ +  DA 
Sbjct: 15  SSFLPFMKMHGLGNDFVVVDERGITPRV--DKAVAVAIADRHRGVGFDQLAVMSETPDA- 71

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  +   N DGS+  +CGN  RC+ R +  +    + T +T RGIL AK+  +G  SV+
Sbjct: 72  -DVRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVN 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+P LDW+ +PLA + D ++       P+       P    MGNPH  FFV D     D
Sbjct: 131 MGQPQLDWQHVPLAHAMDTLEL------PIKGA----PTATGMGNPHCTFFVYD-AEAID 179

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA+ G  L  HP++ E  N+  A +     L +R WERGVG+T A GS++CA+ VA+   
Sbjct: 180 LATKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARR 239

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             T+R V++ + GG L I W D+  V+MTG     ++G+
Sbjct: 240 GLTDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQ 277


>gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
 gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
          Length = 274

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 140/279 (50%), Gaps = 17/279 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62
           M  F KM G+GN  +V+D R    ++T   I AL  D +T    DQ + +        D 
Sbjct: 2   MTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALC-DRHTGIGCDQFVTLRPACAEGADV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+R  N DGSE  +CGN  RCV   +     R     +T  G+L A   R G ++VDMG 
Sbjct: 61  FVRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P   W  +PLA + D +           HL +  +P  VSMGNPHA FF+       D  
Sbjct: 121 PAQGWADVPLAEAMDTL-----------HLPMAGDPAAVSMGNPHATFFLPAP-DGMDPC 168

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HP+F +  N+  A VTS  S+ LR WERG GLT ACGS ACA+VV +     
Sbjct: 169 VAGPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGL 228

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            +R  +V+M GG L I W  D+ HV MTG A   + G  
Sbjct: 229 VDRTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTF 267


>gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31]
 gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31]
          Length = 289

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/283 (37%), Positives = 153/283 (54%), Gaps = 9/283 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-------FDQIMLIHDFQDASV 60
           F KM G+GN  +VI+      + T++ I A++   N          DQ++ I   +    
Sbjct: 5   FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A++R  N DG E  +CGNG RCV   L    ++ S  F+T+ G L  K   D  ++VDM
Sbjct: 65  SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA   D +  +   +GP++   +  P  VSMGNPH +FFV+  +     
Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  HP+F EGVN+  A + + + + L+ WERG GLTAACG+ ACA+ VA+    
Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            T+R   V+   G L IEW + + HV MTG    E+ GKL  K
Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKLPEK 286


>gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
 gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
          Length = 284

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/277 (37%), Positives = 145/277 (52%), Gaps = 18/277 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
            S + F KM G+GN  +V+D R  H    +D I A++       +DQ+ +I    DA  D
Sbjct: 20  PSRLPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGAADA--D 77

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS+  +CGN  RC+   L     R      T RG L A E   G ++V+MG
Sbjct: 78  ARLTFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAA-ERHGGVVAVNMG 136

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDL 180
            P  DW+ +PLAR  D +           HL +  +P    MGNPH  FFVED     DL
Sbjct: 137 APSTDWQGVPLAREVDTL-----------HLPIPGDPVATGMGNPHCTFFVED-AESVDL 184

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ASFG     HP+F E  N+ +A+V     + +R WERGVG+T A GS++CA+ VA+    
Sbjct: 185 ASFGAEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRG 244

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            T R V+V + GG L I+W D+  V+M G     ++G
Sbjct: 245 LTERRVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDG 280


>gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
 gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
          Length = 284

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/275 (37%), Positives = 149/275 (54%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST--DDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+     +   T + I A++   D     DQ++ I   +     A++R
Sbjct: 5   FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG E  +CGNG RCV   L     +    F+T+ G L      +  ++VDMG P L
Sbjct: 65  FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPLA + D   R    +GP++  ++  P  VSMGNPH +FFV+  +        G+
Sbjct: 125 EWSQIPLAEAMDTA-RVELQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F EGVN+  A V S + + L+ WERG GLTAACG+ ACA+ VA+     T+R 
Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243

Query: 246 VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
             V+   G L IEW +++ HV MTG    ++ GKL
Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278


>gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37]
 gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37]
          Length = 279

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 152/287 (52%), Gaps = 18/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
           +++ + F KM G+GN  +VID R     +T + A+          FDQ+ LI    +A  
Sbjct: 8   RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPGGNA-- 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +  +N DGS   +CGN  RC+ R L +   +      T  G L A +  +G  SV+M
Sbjct: 66  DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+LDW+ IPLA   D +     H+ P++     +P   SMGNPH  FFV D     DL
Sbjct: 126 GPPVLDWQNIPLASEVDTL-----HL-PID----GDPVATSMGNPHCTFFVAD-AEAVDL 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG  +  HP++ +  N+ +A +   + L +R WERG GLT A GS++CA+ VA+    
Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
            T RAV + + GG L ++W ++  V+MTG     + G L   T +W+
Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277


>gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
 gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
          Length = 266

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R     +T     A++        DQ+++I D  DA V   
Sbjct: 1   MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDADVS-- 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           ++I N DGSEV++CGN  RCV  F+         T  T  G+L A+   DG  SVDMG P
Sbjct: 59  MQIFNADGSEVEACGNATRCVPLFIG-----HDVTIRTRAGLLDARLI-DGGASVDMGAP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPLA + D +        P +   L  P  V++GNPH IFFV DDL   D A  
Sbjct: 113 RFDWNAIPLAYAMDTLTM------PASWEDLPAPAAVNVGNPHVIFFV-DDLDAVDTARL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G ++ + P+F + VN++ A+V     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L+I+W     + MTG A   ++G+ D
Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262


>gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
 gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
          Length = 277

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + +D   C  NI  +         + HF    D ++LI   +    D  
Sbjct: 3   FTKMQGLGNDYIYVD---CTKNIIDNPSVVSKKVSDRHFGIGSDGLVLI--MKSDIADFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV +++       +K+ T ET+ GI    L  ++N+   + 
Sbjct: 58  MRMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+ K IP+    D+   +   +   N+        VSMGNPHAI +V DD   
Sbjct: 118 VDMGEPILESKQIPVDSEKDRFISESVEVDGYNYKVT----AVSMGNPHAITYV-DDTAS 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G  +  H +F + +N     V    +L +R WERG G T ACG+ A A +VAS 
Sbjct: 173 FPLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I
Sbjct: 233 LNGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277


>gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
 gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
          Length = 280

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 153/284 (53%), Gaps = 17/284 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID R    ++T + + AL+        DQ + I   +   V AF+ +
Sbjct: 8   FLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGGV-AFMGL 66

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG  V+SCGN  RCV R L    + +S   ET+ G++ A+      I VDMG   L 
Sbjct: 67  RNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVDMGPARLT 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA + D +  +   +GP     L +P  VSMGNPHA+FFV DD    DLA++G L
Sbjct: 127 WQEIPLAGAADTLHIE-LSVGP-----LSDPCAVSMGNPHAVFFV-DDADAIDLATWGPL 179

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTN 243
           +  H +F    N+    + +   L +R WERGVG+T ACG+ ACAS VA+   G +    
Sbjct: 180 IEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRRGLI--AG 237

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKW 286
           R   V + GG L I W +++ HV MTG A   + G LD   G W
Sbjct: 238 RTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279


>gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
 gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
          Length = 278

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 148/274 (54%), Gaps = 18/274 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID RG    +T     AL   +    FDQ+  I D    + D  +  
Sbjct: 12  FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIRD--GVTSDVILDF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RCV  FL  +      +  T RG+L AK + D  +S++MG P LD
Sbjct: 70  WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKWSGD-LVSINMGLPQLD 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           W+ +PLAR             PV+HL +  +P  V MGNPH +FFV DD+   D A  G 
Sbjct: 129 WQDVPLARDV-----------PVDHLPIDGDPVAVGMGNPHCVFFV-DDIADVDPAIAGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H +F E  N+  A+V S + + +R WERG G+T ACGS ACA+ VA+     T++ 
Sbjct: 177 PIENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKC 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V +++ GG L ++W D+  V+MTG     ++ +L
Sbjct: 237 VRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARL 269


>gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
 gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
          Length = 277

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 18/280 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           Q+  + F KM G+GN  +V+D R    N++     A+        FDQ+ +I      + 
Sbjct: 5   QTPGLPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAG 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +   N DGS   +CGN  RC+ RFL     R S    T RG L AK+  +G  SV+M
Sbjct: 62  DAQLTFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
           G P L W  +PLAR  D +           HL +  +P    MGNPH  FFV+D +   D
Sbjct: 122 GHPQLKWDEVPLAREMDTL-----------HLPIEGDPVAAGMGNPHCTFFVKD-VEAVD 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L+  G      P+F E  N+ +A++     + +R WERGVG+T A GS++CA+ VA+   
Sbjct: 170 LSDIGPRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARR 229

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T RAV + + GG L I+W D+  V+MTG     + G  
Sbjct: 230 GLTGRAVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTF 268


>gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601]
 gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601]
          Length = 279

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/275 (36%), Positives = 143/275 (52%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T     A++       FDQ+ LI   +    DA +
Sbjct: 11  LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALI---ETGEGDARL 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +   T  T RG L A++  DG  SV+MG P 
Sbjct: 68  TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D +        P+       P    MGNPH  FFVE+     DL +FG
Sbjct: 128 LDWQDIPLASEMDTLAL------PIEG----TPVATGMGNPHCTFFVEN-AEAIDLEAFG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A +   + L +R WERGVG+T + GS++CA+ VA+     T R
Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V++++ GG L I+W D+  V+MTG     ++G  
Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSF 270


>gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
          Length = 282

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 158/293 (53%), Gaps = 33/293 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VI+      +    +  A+   D  HF    D ++++   +D  +D F
Sbjct: 3   FTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDR-HFGIGGDGLVIVG--KDRELDVF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE + CGN +RCV +F+  R  +     +  T+ G     ++ K      + 
Sbjct: 60  MRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           VDMGEPIL+  LIP+  S  K+          RF I             VSMGNPH + F
Sbjct: 120 VDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRI-----------TAVSMGNPHCVVF 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D+     ++ +G +L  HP+F    N+  A++    ++ +R WERG G T ACG+ AC
Sbjct: 169 V-DEFSSVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           A++VAS     T R  +V++ GG L+IEW  DNNHV+MTGEAK+ + G++D++
Sbjct: 228 ATLVASYLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280


>gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
 gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
          Length = 266

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F+      +    ET  G+L AK   DG  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLFVG-----RDVLIETKAGLLDAKA-VDGGASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPLA + D +        PV+   L  P  V++GNPH IFF+ DDL   +    
Sbjct: 113 RLEWDAIPLAYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFL-DDLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
 gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
          Length = 269

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/278 (37%), Positives = 150/278 (53%), Gaps = 19/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62
           V F KM G+GN  +++D R      +T+    AL+ D  T    DQ++L+      S D 
Sbjct: 3   VSFTKMHGLGNDFIMLDARAESLPPMTAATARALA-DRKTGIGCDQVILLEPSD--SADF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DG EV++CGN  R V     + +  ++   ET  G+ +A     G   VDMG 
Sbjct: 60  RMRIFNADGGEVEACGNASRAV-----ALLHGEAANVETSGGV-IAIAPASGGARVDMGV 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  DW+ IPLA + D +        PV    L  P  V++GNPH +FFV DD     L +
Sbjct: 114 PRFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFV-DDADAVPLDT 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +   P+F E +N++IA +T  ++L L  WERGVGLT ACG+ ACA+ +A+     T
Sbjct: 167 MGPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGLT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R V+V + GG L IEW  ++H+ MTG A + + G  D
Sbjct: 227 GRKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264


>gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4]
 gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4]
          Length = 279

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 12/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ S+  + ++     T  G +  +  RDGS++V+
Sbjct: 59  FHYRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVN 118

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P+L+   IP  A+  +K    +  +      FL     VSMGNPH +  V DD+ + 
Sbjct: 119 MGIPVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCG--AVSMGNPHCVLEV-DDVANA 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G+LL KH  F +GVN+   +V     + LR +ERG   T ACGS ACA+V     
Sbjct: 176 DVERIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             K  R V V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 236 QGKLARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQIQ 278


>gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
 gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
          Length = 279

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 158/288 (54%), Gaps = 20/288 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61
           M++F KM G+GN  +V+        + SDA + L+      F  I    L++    A  D
Sbjct: 1   MMEFTKMHGLGNDFVVVY---GERELPSDA-SELAVKLCNRFFGIGADGLVYILPSAKAD 56

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDG 114
             +RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  
Sbjct: 57  FMMRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVS 116

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           S+ VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V DD
Sbjct: 117 SVRVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRFT----AVSMGNPHCVIYV-DD 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
             ++DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V
Sbjct: 172 AVNFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLV 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +S     T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 232 SSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279


>gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
 gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
          Length = 280

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +++D R     IT      +        FDQ+ +I   Q    DA +
Sbjct: 12  LPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIEQGQ---ADAHL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL +   + +    T RG L+A++  DG  S++MG+P 
Sbjct: 69  VFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   + ++       P+       P    MGNPH  FFV D      L  FG
Sbjct: 129 LDWQEIPLAEDVNTLEL------PIEG----GPTATGMGNPHCTFFVVD-AEAIPLEEFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 178 ARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG + I+W D+  V+MTG       G L
Sbjct: 238 EVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTL 271


>gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
 gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
          Length = 286

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 158/288 (54%), Gaps = 20/288 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61
           M++F KM G+GN  +V+        + SDA + L+      F  I    L++    A  D
Sbjct: 8   MMEFTKMHGLGNDFVVVY---GERELPSDA-SELAVKLCNRFFGIGADGLVYILPSAKAD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDG 114
             +RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  
Sbjct: 64  FMMRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVS 123

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           S+ VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V DD
Sbjct: 124 SVRVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRFT----AVSMGNPHCVIYV-DD 178

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
             ++DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V
Sbjct: 179 AVNFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLV 238

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +S     T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 239 SSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286


>gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 275

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 16/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R    ++T+    AL+        DQ++++     A  D  +
Sbjct: 9   IPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA--DVRM 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DGSEV++CGN  R V   L       +   ET+ G L+  E R   +SVDMG P 
Sbjct: 67  RIFNNDGSEVEACGNASRAVGLLLGG-----TQFIETLGG-LIRSEARPDGVSVDMGAPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IP++ + D ++       PV    L NP  V++GNPH IFFV DD    DLA  G
Sbjct: 121 LRWDEIPVSYAMDTLEM------PVGWEDLENPVGVNVGNPHVIFFV-DDADAVDLARLG 173

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+   P+F E +N+++A V   + L LR WERG GLT ACG+ ACA+ VA+     T R
Sbjct: 174 PLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRKLTGR 233

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V + + GG L I W +   + MTG A   +EG  +
Sbjct: 234 KVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269


>gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
 gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
          Length = 266

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F+      +    ET  G+L AK   DG  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLFIG-----RDVLIETKAGLLDAKA-VDGGASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPL+ + D +        PV+   L  P  V++GNPH IFFV DDL   +    
Sbjct: 113 RLEWDAIPLSYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFV-DDLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
 gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
          Length = 279

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 144/274 (52%), Gaps = 17/274 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID RG    +T+ A+     D +    FDQ+  I D   A  D  + 
Sbjct: 12  FMKMHGLGNDFVVIDSRG-RGAVTTPALARALGDRHRGVGFDQLAEIRD--SAEADFALD 68

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RCV  F+     + + T  T RG L A    DG +SV+MG P L
Sbjct: 69  FWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQL 128

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  +PLAR  D +     H+ P++     +P  V MGNPH +FFV  +    ++A  G 
Sbjct: 129 DWAEVPLARPADTL-----HL-PISG----DPVAVGMGNPHCVFFV-GNAETVNVADLGA 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L    P+F +  N+  A +T  + L +R WERG G+T ACGS ACA+ VA+     T R 
Sbjct: 178 LFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGRK 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V++ + GG L I+W  +  V+MTG     ++  L
Sbjct: 238 VTLDLDGGALEIDWRSDG-VWMTGPTAHVFDAML 270


>gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
 gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
          Length = 281

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 148/285 (51%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  + S   AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLP-GTANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L  S DK+      +     L       VSMGNPH I FV+D ++ 
Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVKD-VWG 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             ++ +R   V++ GG L IEW + NN ++MTG A+  + G  ++
Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281


>gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 263

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 8/271 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  L++D R     +++  I  L+  +N  FDQ+++I    D++ +  I   N D
Sbjct: 1   MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G E ++CGNG RCV  FL    K K  +  T  GIL + +N + +I++DMGEPI DW+ I
Sbjct: 59  GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+   ++MD     I   ++    + + +S+GNPH IFF  +D+    L   G  +  H
Sbjct: 119 PLS---EEMDPSNVCITLKDNSSF-DGYALSVGNPHIIFF--NDIETDKLKIIGPEIENH 172

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F +  N++ A++    ++ +  WERG GLT ACG+ ACA+ VAS   + T R V++  
Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             G L I+W  NN + M+G      E  + I
Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263


>gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
 gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
          Length = 277

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 138/266 (51%), Gaps = 16/266 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D RG    +T   I A++       FDQ+ +I        DA +
Sbjct: 9   LPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L     +      T RG LVA +   G  SV+MG+P 
Sbjct: 66  TFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA + D ++       P+       P    MGNPH  FFV D      LA FG
Sbjct: 126 LDWAEIPLAEAMDTLEL------PIEG----GPVATGMGNPHCTFFVAD-AEAVPLAQFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270
           AV V + GG + ++W ++  V+MTGE
Sbjct: 235 AVRVDLDGGTIHVDWREDG-VWMTGE 259


>gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
 gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
          Length = 278

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 141/282 (50%), Gaps = 16/282 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61
           S + F KM G+GN  +V+D R  H    S+       D      +DQ + I   ++    
Sbjct: 2   SGLAFTKMHGLGNDFVVVDGR-VHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A++ I N DG+E Q+CGNG RCV   L     +     ETI G L+  +  DG ++VDMG
Sbjct: 60  AYMAIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMG 119

Query: 122 EPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              LDW+ IPLA   D +     +    GP           V+MGNPHA+FFV D     
Sbjct: 120 PANLDWRAIPLASDTDTLSVTVPEAGTFGPAT--------AVNMGNPHAVFFVPD-AEAV 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL++ G  +    +F E  N+    V + + L +R WER  G+T ACGS ACA++VA+  
Sbjct: 171 DLSTVGPRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVR 230

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              T R  +V + GG L I W  + HV MTG     + G LD
Sbjct: 231 RGLTERRATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272


>gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
 gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
          Length = 275

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 139/267 (52%), Gaps = 14/267 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I   ++ AS DA
Sbjct: 1   MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L  +  + +    T RG L AK+  +G  SV+MG 
Sbjct: 61  HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+   D ++       P+       P    MGNPH  FFVED      L  
Sbjct: 121 PQLLWDEIPLSEEMDTLEL------PIEGA----PTATGMGNPHCTFFVEDAEL-IPLEE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ IA V   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269
            R V + + GG L I+W ++  V+MTG
Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTG 255


>gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
 gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
          Length = 271

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 144/271 (53%), Gaps = 15/271 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D RG    + S    A+        FDQ+ ++ +  DA V   +  
Sbjct: 11  FMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVLSNTDDADVQ--LTF 68

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RC+   L  +   ++ T +T RG+L A  +  G  SV+M  P+LD
Sbjct: 69  YNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPLLD 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  +PLA + D +        P++      P    MGNPH  FFV DD+    L +FG  
Sbjct: 129 WAYVPLAENVDTLAL------PID----GGPTATGMGNPHCTFFV-DDVEAVALETFGAR 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +  HP+F E  N+ +A++   + + +R WERGVG+T + GS++CA+ VA+     T  +V
Sbjct: 178 MEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGCSV 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            + + GG L I+W D+  V+MTG     ++G
Sbjct: 238 QIDLDGGTLHIDWRDDG-VWMTGPTAHVFDG 267


>gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
 gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
          Length = 276

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I+ L+  +    FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R      T  G +V    RDG I+V+MGE
Sbjct: 63  RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IPL  +      + + I   +H F      VSMGNPH +  V DD+   D+  
Sbjct: 123 PIFEPAKIPLKAN---KQENIYIIRENDHTFFCG--AVSMGNPHCVLLV-DDVETADVEG 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       K 
Sbjct: 177 IGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 237 NKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200]
          Length = 275

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PIL+  LIP      K     + +      FL      SMGNPH +  VED +    
Sbjct: 119 MGVPILEPSLIPFKA---KKPEKTYLLQTAQQTFLCG--AASMGNPHCVLDVED-VASAA 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 279

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 157/283 (55%), Gaps = 18/283 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  ++ID ++         AI+  +       DQ++L++  Q A  D  +
Sbjct: 4   INFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I N DGSEV+ CGNG+RC  +++  R    +     ET+ GI+  K+  +  + VDMG+
Sbjct: 62  KIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGE-LVQVDMGK 120

Query: 123 PILDWKLIPLA----RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           P      IP+      +FD M         +N         VSMGNPHA+ F++++  ++
Sbjct: 121 PEFHPNKIPVDVEGDSAFDLMLEVSGWHARIN--------CVSMGNPHAVIFLDEEPKNF 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G L+  HP+F +  N+  A V +   + +R WERG G T ACG+ ACA+ VA+  
Sbjct: 173 AVTKYGPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMV 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              TN+ V+V +LGG LLIEW  + HV+MTG A++ +EG + +
Sbjct: 233 KEFTNKKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKV 275


>gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801]
 gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801]
          Length = 281

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 148/285 (51%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  + S   AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLP-GTANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L  S DK+      +     L       VSMGNPH I FV+D ++ 
Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVKD-VWG 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             ++ +R   V++ GG L IEW + +N ++MTG A+  + G  ++
Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281


>gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 277

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +++D R     IT      +        FDQ+ +I    +   DA +
Sbjct: 9   LPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVI---VNGESDAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +   T  T  G L A++  DG  SV+MG P 
Sbjct: 66  VFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGHPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA   D ++       P+       P    MGNPH  FFVED      L  FG
Sbjct: 126 LDWADIPLAEEVDTLEL------PIE----GGPVATGMGNPHCTFFVED-AEAIPLEEFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 ARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V +++ GG + I+W ++  V+MTG     + G L
Sbjct: 235 KVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTL 268


>gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
          Length = 274

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 15/279 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +++D R    ++T   I ALS        DQ +++        D F+R 
Sbjct: 5   FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDGADVFVRF 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG+E  +CGN  RCV   +       +   +T  G+L  +   DG I+VDMG P LD
Sbjct: 65  FNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVDMGPPALD 124

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFL-RNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           W+ IPL R  D +           HL L  +P   SMGNPHA  F+ D     D    G 
Sbjct: 125 WRDIPLVREVDTL-----------HLPLWGDPAAASMGNPHATVFL-DVGDTTDPRVRGP 172

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E  N+  A+V + + + LR WERG GLT ACGS ACA+VV +       R 
Sbjct: 173 AMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVRRGLVGRT 232

Query: 246 VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
             V+M GG L + W +++ HV M+G A   +EG + + T
Sbjct: 233 CVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271


>gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
 gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
          Length = 265

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 16/276 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G  N  ++ID R   + NI    I    T      DQ+++I   + A  D F
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P
Sbjct: 57  IHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181
              WK IP+  + D +        P+    L  P  V++GNPHA+FFV+  DD+    L 
Sbjct: 117 KFHWKDIPVLHACDTLYL------PIKTELLSYPVGVNIGNPHAVFFVDSIDDI---PLT 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + 
Sbjct: 168 KIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNY 227

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           TN   ++ + GG LLI + D+N + M G     + G
Sbjct: 228 TNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 263


>gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H]
 gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H]
          Length = 257

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 141/273 (51%), Gaps = 22/273 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     + +  I  L         DQ++L+     A  D  +
Sbjct: 3   LSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVHV 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           R  N DGSE  +CGN  RCV +F+       + T +T  G+L   ++ D   +VDMG P 
Sbjct: 63  RFFNPDGSEAGACGNASRCVAKFVGG-----APTLQTAAGLLPTAQDGD-LFTVDMGTPR 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ +PL+R+ D +           HL L +    SMGNPHA  F   D +  +  + G
Sbjct: 117 LDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLF--GDAFRAE--ALG 161

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L + P+F E  N+  A++ S   + LR WERG GLT ACGS ACA+VV +     T R
Sbjct: 162 PGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTER 221

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +V M GG L I W ++ HVFMTG A   + G
Sbjct: 222 TCTVTMDGGDLRITWREDGHVFMTGPAVTVFHG 254


>gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217]
 gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217]
          Length = 277

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T   I A++       FDQ+ +I        DA +
Sbjct: 9   LPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R+L     +      T RG LVA +   G  SV+MG+P 
Sbjct: 66  TFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA + D ++       P+       P    MGNPH  FFV  D     LA FG
Sbjct: 126 LDWAEIPLAEAMDTLEL------PIEG----GPVATGMGNPHCTFFVA-DAEAVPLAQFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG + ++W ++  V+MTGE      G L
Sbjct: 235 RVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVL 268


>gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453]
 gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453]
          Length = 278

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 157/285 (55%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+   +   ++ +  A+           D ++ I   + A  D  +
Sbjct: 1   MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  S+ 
Sbjct: 59  RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V DD  +
Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRFT----AVSMGNPHCVIYV-DDAVN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F   +N+  A V S + +D+R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
               T+R+ ++ + GG L IEW +N NHV+MTG A+  ++G L I
Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278


>gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
 gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
          Length = 268

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 142/277 (51%), Gaps = 22/277 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFI 64
           F KM G+GN  +VID R     +T    +A++  D  H    DQ++L+      S D  +
Sbjct: 5   FTKMHGLGNDFVVIDARVAPVEMTPARAHAIA--DRRHGIGCDQLILLE--PSTSADVKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DG EV++CGN  RCV   +      K    ET+ G+L      DG   V +GEP+
Sbjct: 61  RIFNADGGEVEACGNATRCVATLIG-----KPAVIETLAGMLRVTPA-DGGAEVTLGEPV 114

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYDLASF 183
            DW  IPLA   D  D       PV    L +   V++GNPH +FFV E D    D    
Sbjct: 115 FDWDHIPLAMPMDTRDM------PVAWDELEHGAAVNVGNPHIVFFVPEADAVALD--QL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F E VN+++A +     L LR WERGVGLT ACG+ ACA+ VA+       
Sbjct: 167 GPRIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVR 226

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L+I W     + M+G A + ++G+ D
Sbjct: 227 SPVTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263


>gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 265

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/274 (37%), Positives = 140/274 (51%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G  N  ++ID R   + NI    I    T      DQ+++I   + A  D F
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P
Sbjct: 57  IHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              WK IP+    D +        P+    L  P  V++GNPHA+FFV D +    L   
Sbjct: 117 KFHWKDIPVLHECDTLYL------PIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKI 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + TN
Sbjct: 170 GPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              ++ + GG LLI + D+N + M G     + G
Sbjct: 230 HHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 263


>gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 276

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +   + +  L+  +    FDQ++++        D  
Sbjct: 2   LIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+       +K+   ET +GI+    N+DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +L P    F    ++  +   VN + +     VSMGNPH +  V DD+    + 
Sbjct: 122 AP----RLAPADIPFVAETQEAIYPIEVNGV-MYEISAVSMGNPHGVLVV-DDVNKAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HP F E  N+   +V       LR +ERG G T ACG+ ACA+VVA      
Sbjct: 176 KLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +R V +K+ GG L I W    H V MTG A + ++G++ I
Sbjct: 236 LDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276


>gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
 gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
          Length = 274

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 143/280 (51%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           V F KM G+GN  +VID R       + A      D  T    DQ++L+     A  DA 
Sbjct: 3   VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLE--PSAVADAR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCVV  L       S   ET+ G+L  + + DG +SV++GEP
Sbjct: 61  MRIFNADGSEVEACGNATRCVVSLLGG-----SARIETVAGLLEGR-SADGQVSVELGEP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYDLAS 182
             DW  IPLA + D          PV    L  P   ++GNPH +FFV E D    D   
Sbjct: 115 RFDWDAIPLAYAMDT------RAMPVAWEELEAPMAANVGNPHVVFFVPETDAVALD--R 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +   P+F   +N+++A V    ++ LR WERGVGLT ACG+ ACA+ V++      
Sbjct: 167 LGPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGLV 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  V V + GG L I+W     + MTG A   +  + D+ 
Sbjct: 227 DSPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLS 266


>gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1]
 gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1]
          Length = 275

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIQFTKMHGLGNDFMVVD--GITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+L+   IP      K     + +      FL      SMGNPH +  VED + + +
Sbjct: 119 MGVPVLEPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVED-VANAN 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 233 GKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
 gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
          Length = 277

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/276 (36%), Positives = 140/276 (50%), Gaps = 17/276 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           + F KM G+GN  +V D R   D   + A+  L  D +     DQ+ LI    +   DA 
Sbjct: 9   LPFMKMHGLGNDFVVFDGR-ARDIAITPALARLVADRHRGIGCDQLALI--TAEGPGDAH 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS   +CGN  RC+ R L   + R +    T RG L A++   G  SV+MG P
Sbjct: 66  LTFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGAP 125

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LDW  IPLA + D ++       P+       P    MGNPH  FFVED      LA F
Sbjct: 126 QLDWAEIPLAEAMDTLEL------PIEG----GPTATGMGNPHCTFFVED-AERVALAEF 174

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G     HP+F E  N+ +A +   + L +R WERGVG T A GS++CA+ VA+     T 
Sbjct: 175 GPRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLTG 234

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R V++ + GG L I+W ++  V+MTG      +G L
Sbjct: 235 RCVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVL 269


>gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7]
 gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7]
          Length = 275

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+LD   IP      K     + +      FL      SMGNPH +  VED + + +
Sbjct: 119 MGVPVLDPSQIPFKA---KKAEKTYLLQTSQQTFLCG--AASMGNPHCVLDVED-VANAN 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium
           HF4000_APKG2098]
          Length = 275

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/262 (35%), Positives = 150/262 (57%), Gaps = 4/262 (1%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM+G+GN  ++ D R    ++T + I  +S  ++   DQ++ I   +D + +AF++  N 
Sbjct: 8   KMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYNS 65

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DG E+ +CGNG RCV   L      K  +  T  GIL A+ N    +S++MGEP  +W  
Sbjct: 66  DGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWNK 125

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL++  D  +  +  I  ++    R  F +S+GNPH IFFVED    ++L   G  +  
Sbjct: 126 IPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVED-FNQFNLKEIGPKIEN 183

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           +  F E  N+++A + +   + ++ WERGVGLT ACG+AACA+ V+   L  + R V ++
Sbjct: 184 YSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDIE 243

Query: 250 MLGGGLLIEWHDNNHVFMTGEA 271
            + G L I+W  +N+++MTG+ 
Sbjct: 244 FVEGLLNIDWKKDNNIYMTGKV 265


>gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
 gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
          Length = 293

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 144/283 (50%), Gaps = 18/283 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+  +    FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +P  +   IP         ++ +H+     PV        +V +MGNPHA+  V DD+  
Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPVQL------YVANMGNPHAVIKV-DDILT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
            D+   G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V   +
Sbjct: 175 ADVEKLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGI 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             G L +    +  ++ GG LLI W     V MTG     +EG
Sbjct: 235 REGWLDE-GEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEG 276


>gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
 gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
          Length = 275

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+LD   IP      K     + +      FL      SMGNPH +  VED + + +
Sbjct: 119 MGVPVLDPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVED-VANAN 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 173 VAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 233 GKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 281

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/278 (37%), Positives = 143/278 (51%), Gaps = 16/278 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S +++F KM G  N  ++ID R   + NI    I    T      DQ+++I   + A  D
Sbjct: 15  SHVINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGC--DQVIVITSSKKA--D 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            FI I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG
Sbjct: 71  CFIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMG 130

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179
            P   WK IP+    D +        P+    L  P  V++GNPHA+FFV+  DD+    
Sbjct: 131 YPKFHWKDIPVLHECDTLYL------PIKTELLSYPVGVNIGNPHAVFFVDSIDDI---P 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   
Sbjct: 182 LTKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           + TN   ++ + GG LLI + D+N + M G     + G
Sbjct: 242 NYTNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSG 279


>gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
 gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
          Length = 289

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 18/276 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +++D RG     T     A+        FDQ+  I D ++   D  +
Sbjct: 21  LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGEN--CDIAL 78

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV     +   +   T  T RG+L   E R  ++ V+MG P+
Sbjct: 79  DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRG-EMRGEAVWVNMGPPV 137

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           LDW  +PLAR  D +           HL +  +P  V MGNPHA+FFVED +   D+A+ 
Sbjct: 138 LDWAQVPLAREVDLL-----------HLPIAGDPCGVGMGNPHAVFFVED-IDAVDVAAR 185

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P++ E  N+   +V S + + +R WERG G+T ACGS ACA  VA+     T 
Sbjct: 186 GAEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTG 245

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R V +++ GG L ++W D+  V+MTG   + +EG+L
Sbjct: 246 RHVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280


>gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 276

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+  +    FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R      T  G +V    RDG ++V+MGE
Sbjct: 63  RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL  +      + + I   +H F      VSMGNPH +  V DD+   D+  
Sbjct: 123 PEFEPSKIPLKAN---KQENIYIIRENDHTFFCG--AVSMGNPHCVLLV-DDIATTDVEG 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       K 
Sbjct: 177 IGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 237 NKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10]
 gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10]
          Length = 294

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 12/275 (4%)

Query: 11  MEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
           M G GNK ++ D+RG     N+++D++ A++     H FDQ++++ D  D S DAF+RI 
Sbjct: 28  MNGAGNKFILADVRGRAGVFNLSADSVKAMA---RAHPFDQLLVLED-SDTS-DAFMRIW 82

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DG EV +CGNG R     +       + + +T  G+L+A++    S+SVDMGEP LDW
Sbjct: 83  NSDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDW 142

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPL R  D +  D F +   + + +  P  VSMGNPHA+FF+  D+ ++ +   G ++
Sbjct: 143 TEIPLVRPMDTLQLD-FAV-EKDGVRIEAPGAVSMGNPHAVFFIR-DIANFPVTGLGPVV 199

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E VN   A++     + LR WERG G+TAACG+ ACA++VA+      +R   
Sbjct: 200 EHAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAM 259

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +   GG L +EW   +NHV +TG  + E   +LDI
Sbjct: 260 IHADGGDLSVEWRKSDNHVILTGPVEDEGPIELDI 294


>gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
 gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
          Length = 280

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 143/277 (51%), Gaps = 16/277 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G+GN  +V+D R    +IT     AL        FDQ+ LI + +     A
Sbjct: 10  SGLPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTGVHLA 69

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F    N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+MG 
Sbjct: 70  FF---NADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGA 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  +PLAR  D ++       P+       P    MGNPH  FFV DD+   D+A 
Sbjct: 127 PQLDWTEVPLAREMDTLEL------PIEG----TPTATGMGNPHCTFFV-DDVMQTDVAK 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H +F +  N+  A +T  +++ +R WERGVG+T A GS++CA  VA+     T
Sbjct: 176 LGAELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R V V + GG L I+W ++  V+MTG  +  + G L
Sbjct: 236 GRKVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTL 271


>gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB]
 gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB]
          Length = 292

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 159/293 (54%), Gaps = 31/293 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           +V F KM G+GN  + I+     D    +  +   +D   HF    D ++LI D + A  
Sbjct: 15  VVKFTKMHGLGNDYIYINAV-LEDIKNPNEFSKFVSD--RHFGIGSDGLVLILDSKIA-- 69

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--- 115
           D  +R+ N DGSE + CGN +RCV +F+       +K  T ET+ G+ V +   +G    
Sbjct: 70  DFKMRMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVV 129

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-----VVSMGNPHAIF 169
            + VDMGEP L+   IP+         D++ +  +N     N +      VSMGNPHA+ 
Sbjct: 130 LVKVDMGEPTLEALKIPVIS-------DKYPV--INETIDSNGYNFKFTCVSMGNPHAVT 180

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           ++ED + +++L   G L   H  F +  N+    V + E+L +R WERG G T ACG+ A
Sbjct: 181 YIED-VDNFELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGA 239

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA +V+S     + R  +VK+LGG L++EW + NNHV+MTG A K +EGK+ +
Sbjct: 240 CAVLVSSVLNGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292


>gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
 gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
          Length = 273

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 140/283 (49%), Gaps = 18/283 (6%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTHFDQIMLIHDFQD 57
           M+ +M V F KM G+GN  +V+D R     +      A   D  +    DQ++L+     
Sbjct: 1   MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLE--PS 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            S D  +RI N DGSEV +CGN  R V        +      ET  G+L A  + DG   
Sbjct: 59  GSADFRMRIFNHDGSEVGACGNATRAVALLHGVEAR-----IETAGGLLSASPS-DGGAR 112

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P  DW  IPLA   D +        PV    L NP  V++GNPH IFFVED    
Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTLSM------PVGWEMLENPGAVNVGNPHVIFFVED-TNA 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  + K P+F E VN+++A + S   + LR WERG GLT ACG+ ACA+ V + 
Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                +  V+V + GG L I W     + MTG A + + G  +
Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268


>gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3]
          Length = 276

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ FAKM G+GN  +V+D+     +++++ I  L  D NT   FDQ++L+   Q   VD 
Sbjct: 2   LLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLG-DRNTGVGFDQLLLVETPQSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+  +    ++    +T  G +  K  +D  + VDM
Sbjct: 61  RYRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP+L   L+P             H G    +      VVSMGNPHA+  V DD+    +
Sbjct: 121 GEPVLLPSLVPFDAPAQAPSYRLEHNGQSYTIG-----VVSMGNPHAVIVV-DDVASAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L +HP F    N+   ++ +  ++ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 VELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V+ ++ GG L I+W    +H+ M G     +EG++ +
Sbjct: 235 LLGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276


>gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)]
          Length = 293

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 16/282 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +P  +   IP         ++ +H+   G    L++ N     MGNPHA+  V DD+   
Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPVQLYVAN-----MGNPHAVIKV-DDILTA 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VA 235
           D+   G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V   + 
Sbjct: 176 DVEKLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIR 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            G L +    +  ++ GG LLI W     V MTG     +EG
Sbjct: 236 EGWLDE-GEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEG 276


>gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
 gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
          Length = 283

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 147/285 (51%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASV 60
           + + F+KM G+GN  +VID  G       DA    +  D      FDQ++L+       V
Sbjct: 2   TTLKFSKMHGLGNDFMVID--GTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDV 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DG EV+ CGNG RC V+F++      +++   ET RGI+    N +G I+V
Sbjct: 60  DFRYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITV 119

Query: 119 DMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +MG+P    + +P   RS ++     + +  VN L      ++SMGNPHA+  VED    
Sbjct: 120 NMGQPQFAPQDVPFVLRSGEQAGEKSYIV--VNELDSAQMSLLSMGNPHAVMLVEDTA-S 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A +G  L  HP F   VN+   +V     + LR +ERG G T ACG+ ACA+VV SG
Sbjct: 177 APVAEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVV-SG 235

Query: 238 C---LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               L      V V + GG L I W +   V+MTG A   +EG+L
Sbjct: 236 VRWGLLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280


>gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
 gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
          Length = 295

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 147/279 (52%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDMG
Sbjct: 62  YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ +H+  VN   ++  +V +MGNPHA+  V DD+   D+ 
Sbjct: 122 KPKFEPSEIPFTPRATTKIQNAYHLD-VNGTPVQL-YVANMGNPHAVIKV-DDVLDADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238
           S G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V   +  G 
Sbjct: 179 SLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREGW 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           L +    V  ++ GG ++I+W     V MTG     +EG
Sbjct: 239 LDE-GEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEG 276


>gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
 gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
          Length = 275

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 139/268 (51%), Gaps = 16/268 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--D 61
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I    DAS   D
Sbjct: 1   MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIAT-ADASTEAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS   +CGN  RC+ R+L  +  + S    T RG+L+A +  +G  SV+MG
Sbjct: 60  AHLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPLA   + ++       P+       P    MGNPH  FFVED      LA
Sbjct: 120 APQLSWDEIPLAEELETLEL------PIEGA----PSATGMGNPHCTFFVEDAEV-IPLA 168

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            FG     HP++ E  N+ IA V     L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 169 EFGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGL 228

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           T R V + + GG L I+W D+  V+MTG
Sbjct: 229 TGRKVQIDLDGGTLWIDWRDDG-VWMTG 255


>gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
 gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
          Length = 295

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 12/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +R G + VDMG
Sbjct: 62  YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           +P  +   IP   R+  K+ ++ +H+  VN   ++  +V +MGNPHA+  V DD+   D+
Sbjct: 122 KPKFEPSEIPFTPRAITKI-QNAYHLD-VNGTPVQL-YVANMGNPHAVIKV-DDVLDADV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASG 237
            + G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA+V   +  G
Sbjct: 178 ETLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREG 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            L +    V  ++ GG ++I+W     V MTG     +EG
Sbjct: 238 WLDE-GEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEG 276


>gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
 gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
          Length = 267

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 16/261 (6%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA +   N
Sbjct: 2   KMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFYN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MGEP LDW+
Sbjct: 59  ADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDWQ 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA   D ++       P+       P    MGNPH  FFV D+     LA FG    
Sbjct: 119 DIPLAEDVDTLEL------PIE----GAPTATGMGNPHCTFFV-DNAEVIPLAEFGARYE 167

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T+R V +
Sbjct: 168 HHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQI 227

Query: 249 KMLGGGLLIEWHDNNHVFMTG 269
            + GG L I+W  +  V+MTG
Sbjct: 228 DLDGGTLWIDWRKDG-VWMTG 247


>gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
 gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
          Length = 279

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F+K  G+GN  +++D R   +  +T D    L    + HF    D ++     Q  + 
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLC---DRHFGIGADGVIFALPGQGGT- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118
           D  +RI N DGSE + CGNG+RC+ +FL     ++ K++   T+ G++  +   DG + V
Sbjct: 59  DYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKV 118

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMGEP L  +LIP  LA + +K+      +             VSMGNPH + FV DD+ 
Sbjct: 119 DMGEPQLLAELIPTTLAPAGEKVVDLPLAVAGQTWAVT----CVSMGNPHCLTFV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +L   G L   HP FS+  N    +V   + L +R WERG G+T ACG+ ACA+VVA+
Sbjct: 174 SLNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               + +R  +V++ GG L IEW   +N ++MTG A++ + G+ +I
Sbjct: 234 VLTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279


>gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437]
          Length = 280

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 14/287 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F KM G+GN  +V+            A            D ++ +      + D  +
Sbjct: 1   MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFL--LPSRAGDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118
           RI+N DGSE + CGN +RCV ++   R+   +K    ET  G+   +   DGS    I V
Sbjct: 59  RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL+   +P+A   +++      IG  +  F      VSMGNPHA+ FV DD   +
Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIGEESFRFT----AVSMGNPHAVIFV-DDAAAF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + ++G  L  HP+F    N+    V S   L++R WERGVG T ACG+ ACAS+VA+  
Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
               +R   V++ GG L IEW + ++ V+MTG A+  +EG+ +  +G
Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWNEGSG 280


>gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
 gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
          Length = 302

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%)

Query: 6   VDFAKMEGIGNKILVIDMR--------------GCHDNITSDAINALST----------- 40
           + F KM G+GN  +V+D R                  +  +DA  AL             
Sbjct: 9   LPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQAIGH 68

Query: 41  -DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
                 FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +     
Sbjct: 69  RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125

Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            T RG L A++  +G  SV+MG P L W  IPLAR  D ++       P++      P  
Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL------PIDGA----PTA 175

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
             MGNPH  FFV DD+   DLA FG  +  H ++ E  N+ IA++   + + +R WERGV
Sbjct: 176 TGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + G L
Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293


>gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
 gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
          Length = 302

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 147/300 (49%), Gaps = 41/300 (13%)

Query: 6   VDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALSTDDNTH--------------- 45
           + F KM G+GN  +V+D R             DA +     D T                
Sbjct: 9   LPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQAIGH 68

Query: 46  ------FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
                 FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +     
Sbjct: 69  RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125

Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            T RG L A++  +G  SV+MG P L+W  IPLAR  D ++       P++      P  
Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL------PIDGA----PTA 175

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
             MGNPH  FFV DD+   DLA FG  +  H ++ E  N+ IA++   + + +R WERGV
Sbjct: 176 TGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + G L
Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293


>gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010]
 gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010]
          Length = 281

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +VID       +TS  I  LS        DQ++L+   Q A  D  
Sbjct: 1   MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +    + +   ET  G++      DGS++VDMG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +PI +   IP      + +    ++  ++    +    +SMGNPHA+  V DD+    + 
Sbjct: 121 KPIFEPAKIPF-----QAEEATTYMLTIDEHGKKEIAALSMGNPHAVMLV-DDVTVASVL 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F E VN    ++   +S+ LR +ERG G T+ACG+ ACA+VV+      
Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            N  V+V + GG L I W D +  V+MTG A+  ++G++
Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273


>gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
 gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
          Length = 274

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/282 (38%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 IANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V +LGG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
 gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
          Length = 282

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 142/275 (51%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     ++   + AL+       FDQ+ +I    +A  DA +
Sbjct: 12  LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPAPEA--DAHL 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R +       +    T RG+L+A++  DG   V+MG+P 
Sbjct: 70  TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  +PLA + D ++       P+       P    MGNPH  FFV D      L +FG
Sbjct: 130 TLWSEVPLAEAMDTLEL------PIEG----TPTATGMGNPHCTFFVAD-AEAIPLDTFG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              + + GG L I+W ++  V+MTG     +EG+L
Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRL 272


>gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
 gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
          Length = 314

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 25/290 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F+KM G+GN  +VID  G +   T ++ + ++   N HF    DQ++L+   Q  + D
Sbjct: 32  LKFSKMHGLGNDFMVID--GINQVFTPNSAH-IAAWANRHFGIGFDQLLLVERAQTPAAD 88

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EVQ CGNG RC  +F+  +    +     ET  GI+  +   +G ++VD
Sbjct: 89  FRYRIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVD 148

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL---RNPFV----VSMGNPHAIFFVE 172
           MG P +    IP     D  +      G + H  +   R P +    VSMGNPHA+  V 
Sbjct: 149 MGAPRVLPDDIPFRLPADGSET----AGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRV- 203

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD     +A  G  L +HP F E VN+   ++     + LR +ERG G T ACG+ ACA+
Sbjct: 204 DDTKTAPVAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAA 263

Query: 233 VVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           VVA    G L      V V + GG L ++WH  +HV MTGEA   ++G+L
Sbjct: 264 VVAGMRQGWL-AAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312


>gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 278

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  LV    +   DN++  AI           D ++ I     A  D  +
Sbjct: 1   MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL--VAKENRDG---SIS 117
           RIIN DG+E + CGN +RCV +++     + + S T ET+   +  V  +  DG   ++ 
Sbjct: 59  RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPILD   IP   + + +             F      VSMGNPH + +V DD  +
Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKFT----AVSMGNPHCVIYV-DDAPN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+ ++G  L  HP F   +N+  A VT+ + +++R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               T+RA  + + GG L IEW + +NHV+MTG A+  ++G ++I
Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278


>gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
 gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
          Length = 298

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ 56
           + F KM G+GN  +V+D R        G    +T     A+        FDQ+ +I    
Sbjct: 22  LPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQLAVI---T 78

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
             + DA +   N DGS   +CGN  RC+ RFL     + S    T RG L A++  D   
Sbjct: 79  TGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAAQDMGDRLT 138

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG+P LDW+ IPLA + + ++       P++      P    MGNPH  FFV D L 
Sbjct: 139 AVNMGQPQLDWQDIPLAHAMETLEL------PID----GAPTATGMGNPHCTFFVAD-LA 187

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG  +  HP++ E  N+ IA++   + + +R WERGVG+T A GS++CA+ VA+
Sbjct: 188 AIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAA 247

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T R V + + GG L I+W ++  V+MTG     + G L
Sbjct: 248 ARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTL 289


>gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
 gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
          Length = 284

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 140/267 (52%), Gaps = 16/267 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDAF 63
           + F KM G+GN  +V+D R    ++T      ++       FDQ+ LI   + ++  DA 
Sbjct: 12  LPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPADAH 71

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS   +CGN  RCV R L +   +      T RG L+A ++ DG  SV+MG+P
Sbjct: 72  LLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMGQP 131

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLAS 182
            L W  +PLA   D ++       P+       P    MGNPH  FFVE+ DL    L  
Sbjct: 132 QLLWDQVPLAEEVDTLEL------PIE----GGPTATGMGNPHCTFFVENADLI--PLEE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 180 FGPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269
            R V V + GG L I+W ++  V+MTG
Sbjct: 240 GRKVQVDLDGGTLWIDWREDG-VWMTG 265


>gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
 gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
          Length = 277

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/288 (36%), Positives = 151/288 (52%), Gaps = 23/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN  +V+D        + + I  LS       FDQ++L+    D  VD  
Sbjct: 2   ILKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEVQ CGNG RC VRF+       ++     T+ G+L  K N D S++V+MG
Sbjct: 62  YRIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNMG 121

Query: 122 EPILDWKLIPL-----ARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            P LD + +P      + S++   +  D   IG            VSMGNPHA+  V+D 
Sbjct: 122 VPQLDPEKLPFKAEAQSESYELCVKGFDAVTIG-----------AVSMGNPHAVINVKD- 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G+L+ KH  F E VN+  ++  +   ++LR +ERG G T ACG+ ACA+VV
Sbjct: 170 VKTAPVHELGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVV 229

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A    H+    V V + GG L I W   N+ V M+G A   +EG++ I
Sbjct: 230 AGIVQHRLVSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQIVI 277


>gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
 gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
          Length = 277

 Score =  162 bits (410), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 137/273 (50%), Gaps = 17/273 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID R   + +T     AL        FDQ+ +I   + A  D  +  
Sbjct: 13  FLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAEGA--DFTLEF 70

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS+  +CGN  RCV   +   + +   T  T RG L A+   DG +SV+MG PILD
Sbjct: 71  WNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVNMGAPILD 130

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              IP+A              P+      +P  V MGNPH +FFVED     D++  G  
Sbjct: 131 PAAIPVAAD------------PLALPLTGDPVAVGMGNPHCVFFVED-AETADVSGLGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +  HP+F E  N+  A +   + L +R WERG G+T ACGS  CA+ VA+     T R V
Sbjct: 178 IEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLRGLTGRRV 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + GG L I+W ++  V+MTG     +  +L
Sbjct: 238 IVDVDGGRLEIDWREDG-VWMTGPTALVFAAEL 269


>gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
 gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
          Length = 279

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 26/294 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G+GN  ++++  G +++I      A +  D  HF    D ++LI   +    D
Sbjct: 1   MEFTKMHGLGNDFVMVN--GFNEDIADPNQLAEAICDR-HFGVGADGLVLILPSKQEEAD 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115
             +RI N DGSE + CGN +RC  ++L  R   ++     ET+ GI+V +    +++  +
Sbjct: 58  FRMRIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEA 117

Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + VDMG+P L    IP+   + DK+ +++  +    +        VSMGNPH + FV DD
Sbjct: 118 VQVDMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEIT----AVSMGNPHTVIFV-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              + +   G  + +HP F E  N+    V +   + +R WERG G+T ACG+ AC S V
Sbjct: 173 ADDFPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           AS     TN+ V V +LGG L IEW +++HV+MTG A+       ++  G+WIK
Sbjct: 233 ASILNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAE-------EVFVGEWIK 279


>gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
 gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
          Length = 278

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 148/286 (51%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K +G+GN  +++D R  H    S +        + HF    D ++      D + D
Sbjct: 1   MEFTKYQGLGNDFILVDNR--HSTTPSLSPEEAVKLCDRHFGIGADGVIFALP-GDENSD 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++     +G + 
Sbjct: 58  YTMRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVK 117

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L  K IP  L ++ +K+      +G  + L       VSMGNPH I FVED +
Sbjct: 118 VDMGTPFLLAKEIPTTLTKAEEKVIDQSLEVGDQSWLVT----CVSMGNPHCITFVED-V 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G     H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA
Sbjct: 173 AKIPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
                  +R  +V++ GG L IEW   +N ++MTG A++ + G +D
Sbjct: 233 GVLTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278


>gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11]
 gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11]
          Length = 281

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 138/267 (51%), Gaps = 16/267 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA
Sbjct: 10  TRLPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L            T RG+L+A++  +G  SV+MG+
Sbjct: 67  HLTFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQ 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ IPLA   D ++       P+       P    MGNPH  FFVE+      LA 
Sbjct: 127 PQLDWQDIPLAEDVDTLEL------PIEG----TPTATGMGNPHCTFFVENAEV-IPLAE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269
              V + + GG L ++W D+  V+MTG
Sbjct: 236 GHKVRIDLDGGTLWVDWRDDG-VWMTG 261


>gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
 gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
          Length = 281

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 141/275 (51%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID RG    +T     AL        FDQ+ +I    D+ V+  +
Sbjct: 13  LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDSDVE--L 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R       +   T  T RG+L A +  DG  SV+MGEP+
Sbjct: 71  TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           + W+ IPL  + D ++       P++      P    MGNPH  FFVED     DL + G
Sbjct: 131 MGWRDIPLKGACDTLNL------PIDG----TPVATGMGNPHCTFFVED-ADAIDLETLG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
               +HP+F +  N+  A V   + L +R WERGVG+T A GS++CA  V++     T R
Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG + ++W  +  V+MTG     + G+L
Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGEL 273


>gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 276

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 149/285 (52%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVDA 62
           ++F KM G+GN  +V      H  +  + ++ L+ D    F  I    L++     + D 
Sbjct: 1   MEFTKMHGLGNDFIVF---AGHQQLPEN-VSQLAIDLCNRFFGIGADGLVYILPSENADF 56

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGS 115
            +RIIN DGSE + CGN +RCV +++           T ETI  G+    L  K+ +  +
Sbjct: 57  KMRIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVAT 116

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL+   +P     D++      +      F      VSMGNPH + +V DD 
Sbjct: 117 VRVDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSFT----AVSMGNPHCVIYV-DDA 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            ++DL ++G  L  HPMF   +N+    V S    D+R WERG G T ACG+ ACA+VV+
Sbjct: 172 ANFDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVS 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           S     T+R  +V + GG L IEW + +NHV+MTG A + + G  
Sbjct: 232 SVLNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276


>gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681]
 gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus
           polymyxa E681]
          Length = 277

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 150/284 (52%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAF 63
           ++F KM G+GN  +V      H ++ S A        + HF      L++       D  
Sbjct: 1   MEFTKMNGLGNDFIVWFG---HQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKADFC 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116
           +RIIN DGSE + CGN +RC  +++  R  + R+  T ET+  G+    L  +      +
Sbjct: 58  MRIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+   IP      ++  +    G     F      VSMGNPH + +VED   
Sbjct: 118 KVDMGEPILEGLKIPTTLERTRVINEPIEAGGSGFCFT----AVSMGNPHCVIYVED-AP 172

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS
Sbjct: 173 SFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVAS 232

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                ++R   V + GG L IEW  D+NH++MTG A+  +EG+L
Sbjct: 233 VLNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276


>gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 267

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R   + NI   AI    T      DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIANRKT--GIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +     H+ P+    L +P  +++GNPHAIFFV D +    L   
Sbjct: 117 KFHWTDIPTSQECDTL-----HL-PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +   V + GG LLI +  +N + M G     + G
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263


>gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
 gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
          Length = 260

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 142/269 (52%), Gaps = 15/269 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +VID R     +T   + A++       FDQ+ +I    DA  DA +   N
Sbjct: 2   KMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFYN 59

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R++     +   T  T+RGIL+A +   G  S++MG+P L W+
Sbjct: 60  SDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTWQ 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLAR  D          P++      P    MGNPH  FFVED     DLA+ G L+ 
Sbjct: 120 EIPLARDVD------LDALPID----GAPMATGMGNPHCTFFVED-AEEVDLAAMGALIE 168

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++    N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T R V +
Sbjct: 169 HHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVRI 228

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            + GG + I+W  N+ V+MTG     + G
Sbjct: 229 DLDGGTIHIDWR-NDGVWMTGPTAHVFSG 256


>gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
 gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
          Length = 271

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
            S V F KM G+GN  +VID R     +T   + A++       FDQ+ ++    DA  D
Sbjct: 6   PSGVPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMKKRADA--D 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DG+   +CGN  RC+ R +     +   T  T RGIL+A++   G  S++MG
Sbjct: 64  VHLTFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W+ IPLAR  D          P+N      P    MGNPH  FFVED     DLA
Sbjct: 124 LPQLTWQEIPLARDVD------LDALPIN----GAPMATGMGNPHCTFFVED-AEAIDLA 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G L+  HP++ +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 173 AMGALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGL 232

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           T R+V + + GG + I+W D+  V+MTG     + G
Sbjct: 233 TGRSVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSG 267


>gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 274

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 141/283 (49%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  LS       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  V DD+
Sbjct: 121 PIWEPSQVPFTANKFEK------------NYILRTELQTVLCGVVSMGNPHCVLQV-DDV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+S  +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 KTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L+IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDG 270


>gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2]
 gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2]
          Length = 276

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 149/284 (52%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFD--QIMLIHDFQDASVDAF 63
           ++F KM G+GN  +V      H  + SDA        + HF      L++       D  
Sbjct: 1   MEFTKMNGLGNDFIVWY---GHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKADFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116
           +RIIN DGSE + CGN +RC  +++  R  + R+  T ET+  G+    L  +      +
Sbjct: 58  MRIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+   IP       +  +    G     F      VSMGNPH + +VED   
Sbjct: 118 KVDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRFT----AVSMGNPHCVIYVED-AP 172

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS
Sbjct: 173 SFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVAS 232

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                ++R   V + GG L IEW  D+NH++MTG A+  +EG++
Sbjct: 233 VLNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276


>gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810]
          Length = 274

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +   +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V +LGG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9]
 gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9]
          Length = 278

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 146/280 (52%), Gaps = 12/280 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+G+GN   V+D       +T + I  L        FDQ++L+   QDA  D   RI
Sbjct: 5   FTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            NCDG EV+ CGNG RC  RF+       R+    ET RG++V +   DG ++VDMG P 
Sbjct: 65  FNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDMGPPR 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP   + D +  +    G +  +      VVSMGNPHA+  V DD+    + +FG
Sbjct: 125 FRPADIPFVAAEDAVIHELEVAGQILGV-----TVVSMGNPHAVQVV-DDVDTAPVTAFG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242
            L+  H  F   VN    ++ S  ++ LR +ERG G T ACG+ ACA+VVA     L   
Sbjct: 179 PLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRGLLDA 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V+  GG L I W  + H V+MTG A   +EG++ +
Sbjct: 239 DTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278


>gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51]
 gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 287

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 144/284 (50%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID          D         +  F    D ++++     A  D
Sbjct: 5   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
           A +RI+N DGSE + CGNG+RC  R++  +  + +     ET+ GIL  + +  G     
Sbjct: 63  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVED  
Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVED-Y 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281


>gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313]
          Length = 280

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 154/288 (53%), Gaps = 27/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  + ++   C +    +         + HF    D ++LI   + A  D  
Sbjct: 3   FTKMHGLGNDYIYVN---CFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV +++  R    +     ET+ GI    L  ++ +   + 
Sbjct: 58  MRMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174
           VDMGEPIL  + IP+       D++ F   PV      F      VSMGNPHA+ +V++ 
Sbjct: 118 VDMGEPILKPENIPV-----NSDKEIFRTEPVEIDGKEFKVT--CVSMGNPHAVSYVKN- 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +  + L   G  +  HP+F + +N     V    +L +R WERG G T ACG+ ACA +V
Sbjct: 170 VDIFPLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLV 229

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           AS     + R  +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+
Sbjct: 230 ASVLNGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277


>gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
 gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
          Length = 286

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 19/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDM--RGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + ID+      + +  D AI           D ++LIH   DA  D 
Sbjct: 3   IPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA--DV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            +RI N DGSE +SCGNG+RC  ++      +  K F  +T   I+ A+     N+   +
Sbjct: 61  GMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVNQV 120

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++DMGEPIL    IP+  + D K+  + F +             VSMGNPH +FFV DD+
Sbjct: 121 TIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGETQYIT----AVSMGNPHGVFFV-DDI 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G  + K   F E +N+    V S   L+ R WERG G+T ACG+ ACA+VVA
Sbjct: 176 EKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVA 235

Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           +    K  ++  + V + GG L IEW ++NHV+MTG A+
Sbjct: 236 ATLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAE 274


>gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
 gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
          Length = 281

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/267 (35%), Positives = 139/267 (52%), Gaps = 16/267 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA
Sbjct: 10  TRLPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MG+
Sbjct: 67  HLTFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQ 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ IPLA   D ++       P+       P    MGNPH  FFV +      LA 
Sbjct: 127 PQLDWQDIPLAEDVDTLEL------PIEGA----PTATGMGNPHCTFFVGNAEV-IPLAE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTG 269
            R V + + GG L I+W ++  V+MTG
Sbjct: 236 GRKVQIDLDGGTLWIDWREDG-VWMTG 261


>gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
 gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
          Length = 274

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIQRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G ++     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GTVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDG 270


>gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846]
          Length = 274

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G+LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
          Length = 282

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 148/293 (50%), Gaps = 32/293 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH------------ 53
           +DF KM G+GN  +      C D     A N  +  D +   Q  L H            
Sbjct: 1   MDFIKMHGLGNDFV------CLDRFLDPAENNPAETDYSELAQ-RLCHRQLGIGGDGLLL 53

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LV 107
                  DA +RI N DGSE + CGNG+RC  R++  +  +++   T ET+ GI    L 
Sbjct: 54  ILPSEKADARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQ 113

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPH 166
            K+ R   ++VDMG+P L  K IP+    D++   R  + G    +       VS+GNPH
Sbjct: 114 MKDGRVYGVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGIT-----AVSVGNPH 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            + F+ DD    D+ + G  L KHP F    N+   RV S E + ++ WERGVG T ACG
Sbjct: 169 CVLFL-DDFAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACG 227

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + ACASVVA+    +T R ++V + GG L IE+ +   + MTG A+  + G+L
Sbjct: 228 TGACASVVAAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280


>gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
 gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
          Length = 269

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/282 (36%), Positives = 141/282 (50%), Gaps = 27/282 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLI-----HDFQDA 58
           VDF KM G+GN  +V+D R       S+A  +   D NT    DQ++++     HDF+  
Sbjct: 3   VDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDDHDFR-- 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +RI N DG EV++CGN  R V     + +     T ET  G  +  E   G  SV
Sbjct: 61  -----MRIYNSDGGEVEACGNASRAV-----AMLHGSPATVETAGGA-IRLEPAQGGASV 109

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP  +W  IPLA + D  +       PV    L     V++GNPH IFFV+D     
Sbjct: 110 DMGEPRFEWDAIPLAYAMDTANM------PVGWGELEAGIAVNVGNPHVIFFVQD-ADAV 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLA  G  +    +F E +N+++A   S   L LR WERG GLT ACG+ ACA+ VA+  
Sbjct: 163 DLAELGPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAIS 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  V+V + GG L I W     + MTG A + + G  +
Sbjct: 223 RLHMKSPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264


>gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
 gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
          Length = 277

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/295 (34%), Positives = 156/295 (52%), Gaps = 41/295 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++   C      +         + HF    D ++LI   Q    D  
Sbjct: 3   FTKMQGLGNDYIYVN---CFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQ--MCDFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKS-FTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV +F+    M +KS    ET+ GI    +  K+N+   + 
Sbjct: 58  MRMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPHA 167
           VDMGEPIL+   IP+  +                LF+  P V          VSMGNPHA
Sbjct: 118 VDMGEPILEPAKIPVDSN--------------KELFVSQPVVIDGREFKVTCVSMGNPHA 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +V DD+  + L   G  +  + ++ + +N    +V   ++L +R WERG G T ACG+
Sbjct: 164 VTYV-DDVEKFPLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGT 222

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            ACA +V+S     +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+
Sbjct: 223 GACAVLVSSVLNDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277


>gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 286

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KMEGIGN  + ID       ++ + I  LS D N       +I      S +  + 
Sbjct: 9   INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLS-DRNFGIGGDGVIFIRNSNSGEFQMD 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA--KENRDGSI---SV 118
           + N DGS  + CGNG+RCV +F+      K +  T ET +G+L    K   +G +   +V
Sbjct: 68  MYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVTV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEPIL   L+P+    D+   ++   +    + F      VSMGNPH + +V DD   
Sbjct: 128 DMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DDADD 182

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  VAS 
Sbjct: 183 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 242

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 243 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286


>gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678]
          Length = 275

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIQFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG+EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PIL+   IP      K ++      P+           SMGNPH +  VED +    
Sbjct: 119 MGVPILEPSQIPFKAK--KPEKTYLLQTPMQTFLCG---AASMGNPHCVLDVED-VASAS 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G +L KH  F  GVN+   +V     + LR +ERG   T ACG+ ACA+VV     
Sbjct: 173 VAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K  + V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 233 GKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20]
 gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
 gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
           Epimerase At 1.7a
 gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Ll-Azidap
 gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Dl-Azidap
 gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20]
 gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21]
 gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866]
 gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
          Length = 274

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
 gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
          Length = 283

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 143/284 (50%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID          D         +  F    D ++++        D
Sbjct: 1   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMV--LPSDKAD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
           A +RI+N DGSE + CGNG+RC  R++  +  + +     ET+ GIL  + +  G     
Sbjct: 59  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVED  
Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVED-Y 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277


>gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
 gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
          Length = 267

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 146/274 (53%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R   ++NI   AI    T      DQI++I   + A  D F
Sbjct: 1   MIDFIKMHGTLNDFVIIDCRSKFYNNIDYKAIANRKT--GIGCDQIIVITKSEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  ++ + T E    IL      + ++ V+MG  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP+++  D +     H+ P+    L +P  +++GNPHAIFFV + +    L   
Sbjct: 117 KFHWTDIPISQECDTL-----HL-PITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S   + LR WERG G TA+CGS ACA++VA+     T+
Sbjct: 170 GPKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTD 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              ++ + GG LLI + ++N + M G     + G
Sbjct: 230 TTATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263


>gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 280

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KMEGIGN  + ID       ++ + I  LS D N       +I      S +  + 
Sbjct: 3   INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLS-DRNFGIGGDGVIFIRNSNSGEFQMD 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA--KENRDGSI---SV 118
           + N DGS  + CGNG+RCV +F+      K +  T ET +G+L    K   +G +   +V
Sbjct: 62  MYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEPIL   L+P+    D+   ++   +    + F      VSMGNPH + +V DD   
Sbjct: 122 DMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DDADD 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  VAS 
Sbjct: 177 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 237 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280


>gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
 gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
          Length = 274

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
          Length = 267

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R   + NI   AI    T      DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIANRKT--GIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +     H+ P+    L +P  +++GNPHAIFFV D +    L   
Sbjct: 117 KFHWTDIPTSQECDTL-----HL-PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +   V + GG LLI +  +N + M G     + G
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNG 263


>gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
 gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
          Length = 274

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
 gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
          Length = 308

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 149/286 (52%), Gaps = 12/286 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           Q  ++ F KM G+GN  +V+D       +  D I  L+  +    FDQ++++       V
Sbjct: 8   QGPVLRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDV 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    ++    +T +G++  K  RDG ++V
Sbjct: 68  DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P L+   IP A    K   D + +  VN   +     +SMGNPH +  V D++   
Sbjct: 128 NMGVPELNPPAIPFAADQRK---DVYTVD-VNGQTVEL-SAISMGNPHGVLVV-DNVDTA 181

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + S G  L KHP F    N+   +V       LR +ERG G T ACGS ACA+VVA GC
Sbjct: 182 PVESLGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVA-GC 240

Query: 239 LHK-TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           L    +  V V++ GG L+IEW  ++  V M G A   +EG+L + 
Sbjct: 241 LRGLLDSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286


>gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
 gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
          Length = 283

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/277 (36%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 8   FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V++  G   D +T+             FDQ++L+      +VD   RI
Sbjct: 6   FTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++V+MG+P 
Sbjct: 66  FNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNMGKPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP     D+ D    H+  V  L       V+MGNPHA+  VED +    +A +G
Sbjct: 126 FTSSEIPFVPVPDEADDALTHMVMVG-LETVQVSCVNMGNPHAVIVVED-VQTAPVAHWG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VV+   L     
Sbjct: 184 EAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGVRLGLLAE 243

Query: 245 AVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V VK  + GG L I W     V MTG  +  +EG+L
Sbjct: 244 GVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280


>gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
 gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
          Length = 266

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 138/271 (50%), Gaps = 16/271 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +V+D R     +T      ++       FDQ+ ++    +   DA +   N
Sbjct: 2   KMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFYN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R L     +      T RG L A++  +G  SV+MG P LDW+
Sbjct: 59  ADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDWQ 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA   D ++       P+       P    MGNPH  FFVED      L  FG    
Sbjct: 119 DIPLAEEADTLEL------PIEG----GPTATGMGNPHCTFFVEDAEV-IPLEEFGQRYE 167

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++ +  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T R V +
Sbjct: 168 HHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQI 227

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + GG L I+W ++  V+MTG     ++G L
Sbjct: 228 DLDGGTLWIDWAEDG-VWMTGPTMHVFDGTL 257


>gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
 gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
          Length = 286

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 150/288 (52%), Gaps = 29/288 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56
           ++F K +G+GN  +++D R        +AI  LS+ +     + HF    D ++      
Sbjct: 1   MEFTKYQGLGNDFILVDNR-------HNAIPLLSSKEAIKLCDRHFGIGADGVIFALP-G 52

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENR 112
           D + D  +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++ +   
Sbjct: 53  DENTDYTMRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEE 112

Query: 113 DGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           DG + VDMG P L  K IP  L +  +K+      +G  +         VSMGNPH I F
Sbjct: 113 DGQVKVDMGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQSWSVT----CVSMGNPHCITF 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D++    L + G +   H +F E  N     V   + L +R WERG G+T ACG+ AC
Sbjct: 169 V-DNVATIPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           ASVVA       +R  +V++ GG L IEW + +N ++MTG A+  + G
Sbjct: 228 ASVVAGVLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTG 275


>gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330]
          Length = 282

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID         ++ I   +       FDQ++++   Q   VD   RI
Sbjct: 6   FSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG RC V+F+T +    +     ET RGI+  + N DG ++V+MG+P 
Sbjct: 66  FNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQPR 125

Query: 125 LDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                +P   RS +K D   F +  VN +      +VSMGNPHA+  V  D+    + ++
Sbjct: 126 FAPDDVPFVLRSGEKADDKTFIV--VNGIDSAEMSLVSMGNPHAVMLV-GDVATAPVENW 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG--CLHK 241
           GN L  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+VV+     L  
Sbjct: 183 GNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSLLT 242

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               + V + GG L I W D   V MTG A   + G++ +
Sbjct: 243 AGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282


>gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
 gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
          Length = 283

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 7/277 (2%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V++ +    D +T+             FDQ++L+      +VD   RI
Sbjct: 6   FTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++V+MG+P 
Sbjct: 66  FNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNMGKPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP     D+++    H+  V  L       V+MGNPHA+  VED +    +A +G
Sbjct: 126 FTSSEIPFVPVPDEVEDALTHMVMVG-LETVQVSCVNMGNPHAVIVVED-VQTAPVAHWG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VVA   L     
Sbjct: 184 EAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGVRLGLLAE 243

Query: 245 AVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V VK  + GG L I W     V MTG  +  +EG+L
Sbjct: 244 GVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280


>gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
 gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
          Length = 276

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/283 (36%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F+KM G+GN  +VID       +T + I  L+   + HF    DQ++L+   +  +VD
Sbjct: 3   IRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLA---DRHFGVGCDQVLLVEIPEQPNVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDGSEV++CGNG RC   F+  R    ++    ET  GI+  +   D  +SVD
Sbjct: 60  FRYRIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  + IP       +       G V  +       VSMGNPHA+  V DD+    
Sbjct: 120 MGVPRLLPEKIPFVADQQAVTYPLDVAGQVCSIS-----AVSMGNPHAVMLV-DDVKSAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+  HP F   VN    +V S + ++LR +ERG G T ACG+ ACA+VV     
Sbjct: 174 VGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLR 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              N  V V + GG L I W    H V MTG A   + G++ +
Sbjct: 234 GLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276


>gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
 gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
          Length = 278

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 22/286 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVD 61
           M+ F KM G+GN  +VI      +      +  L+ +    F  I    L++       D
Sbjct: 1   MMKFTKMHGLGNDFIVI----AGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVAD 56

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSIS 117
             +RIIN DGSE + CGN +RC  +++       ++  T ET+      V  E  DG + 
Sbjct: 57  FRMRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQ 116

Query: 118 ---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVED 173
              VDMG PIL+   +P       +D DR    P+        F  VSMGNPH + +V D
Sbjct: 117 QVRVDMGAPILNGLQVPTT-----VDEDRVIEHPIEVDGREFRFTAVSMGNPHCVIYV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D  ++DLA++G  L  HPMF   +N+    V S E  ++R WERG G T ACG+ ACA+V
Sbjct: 171 DAANFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATV 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           V+S     T+R   V + GG L IEW++ +NHV+MTG A + + G+
Sbjct: 231 VSSVLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGE 276


>gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
          Length = 274

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 274

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  ++ID    + ++TS+ I  LS       FDQ++++    D ++D   RI
Sbjct: 3   FTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHCRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG+EV  CGNGMRCV +F  L     +++    T    ++     D  +SV+MG PI
Sbjct: 63  YNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGAPI 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D KLIP   S  +  +      P   +      VVSMGNPH I  VE  + +  + S G
Sbjct: 123 FDPKLIPFYIS--QYQKTYILFLPTQIILCG---VVSMGNPHCIILVEK-IENIQVTSLG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHK 241
           + L  H  F E VN+S  ++ +  ++ LR +ERGVG T ACG+AACA+V   +  G L++
Sbjct: 177 SALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLLYE 236

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +   V+V + GG + + W   +N ++MTG     ++G +++
Sbjct: 237 S---VNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274


>gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
 gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
          Length = 274

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 140/277 (50%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    +D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G +V     D ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD++  ++A
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------GAVSMGNPHCVVQV-DDIHTANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V + + + LR  ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V + GG LLIEW    H ++MTG A   ++G
Sbjct: 234 LDNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDG 270


>gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193]
 gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193]
          Length = 292

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/273 (35%), Positives = 133/273 (48%), Gaps = 16/273 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     IT      ++       FDQ+ LI   +    DA +  
Sbjct: 27  FMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALI---EQGKGDAHLTF 83

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RC+ R L     +      T RG L A +  +G  SV+MG P LD
Sbjct: 84  FNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQLD 143

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPL    D ++       P+       P    MGNPH  FFVED      L  FG  
Sbjct: 144 WRDIPLREETDTLEL------PIE----GGPTATGMGNPHCTFFVEDAGL-IPLTDFGPR 192

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
              HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     T R V
Sbjct: 193 YEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRRV 252

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + + GG L I+W D+  V+MTG     + G  
Sbjct: 253 QIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTF 284


>gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
 gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
          Length = 277

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 143/281 (50%), Gaps = 24/281 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           S + F KM G+GN  +V+D R     +T     AL+   N H    FDQ+ LI + +   
Sbjct: 7   SGLPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALA---NRHTGVGFDQLALITNTKTGV 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             AF    N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+
Sbjct: 64  HLAFF---NADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178
           MG P LDW  +PLAR  D ++           L ++  P    MGNPH  FFV DD    
Sbjct: 121 MGAPQLDWAEVPLAREMDTLE-----------LPMKGAPTATGMGNPHCTFFV-DDAMQI 168

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+A  G     H +F +  N+  A +T  + + +R WERGVG+T A GS++CA  VA+  
Sbjct: 169 DVAKLGAEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAAR 228

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              T R V + + GG L I+W D+  V+MTG  +  + G L
Sbjct: 229 RGLTGRKVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTL 268


>gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 276

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 151/280 (53%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+  +    FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL ++  + +     +G  + LF+      SMGNPH +  V DD+   ++A 
Sbjct: 123 PEFEPANIPL-KANKQENTYILRVGE-STLFIG---AASMGNPHCVMEV-DDVDTANVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ KH  FSEGVN+   ++ +   + LR +ERG G T ACGS ACA+V       K 
Sbjct: 177 IGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           ++ V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
 gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
          Length = 274

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 141/283 (49%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120

Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           P+ +   IP +A  F+K            +  LR          VSMGNPH +  VED +
Sbjct: 121 PVWEPNKIPFIANKFEK------------NYILRTTVQTVLCGAVSMGNPHCVVQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              ++   G LL  H  F E VN    +V + + + LR +ERG G T ACGS ACA+V  
Sbjct: 168 QTANVEQLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG A   ++G
Sbjct: 228 GIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270


>gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
 gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
          Length = 274

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VS+GNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSIGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893]
 gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893]
          Length = 327

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 151/299 (50%), Gaps = 20/299 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           Q  M++F KM G+GN  +V+D       +  + I  L+  +    FDQ++++       V
Sbjct: 14  QGPMLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDV 73

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    +K    +T +G++  +  R G ++V
Sbjct: 74  DFRYRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P L+   IP A    K   D + +   G    L       VSMGNPH +  V DD+
Sbjct: 134 DMGVPELNPPAIPFAADRRK---DVYTVELGGDTVELS-----AVSMGNPHGVLLV-DDV 184

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G  L  HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA
Sbjct: 185 DTAPVGEYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVA 244

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            GCL     NR V V++ GG L+IEW  +   V M G     +EG+L +   +  ++ +
Sbjct: 245 -GCLRGLLDNR-VDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPADQPPRRRK 301


>gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
 gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++F K +G+GN  +++D R     + S  +A+           D ++      D S D 
Sbjct: 12  IMEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDDQS-DY 70

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISV 118
            +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++ +   +G + V
Sbjct: 71  TMRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKV 130

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P L  K IP  L +  +K+      +G  +     +   VSMGNPH I FVE+ + 
Sbjct: 131 DMGNPFLLAKEIPTTLTKGEEKVINQFLEVGGQSW----SVTCVSMGNPHCITFVEN-VA 185

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G +   H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA 
Sbjct: 186 TIPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAG 245

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
                 +R  +V++ GG L IEW + +N ++MTG A+  + G
Sbjct: 246 VLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTG 287


>gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
 gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
          Length = 269

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 133/263 (50%), Gaps = 16/263 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     IT      ++       FDQ+ +I   +    DA +  
Sbjct: 3   FMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVI---EPGKGDAHLVF 59

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RC+ R L     +      T RG L A++  DG  SV+MG P L 
Sbjct: 60  YNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQLL 119

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA   D ++       P+       P    MGNPH  FFV D      LA FG  
Sbjct: 120 WHEIPLAEEMDTLEL------PIE----GGPTATGMGNPHCTFFVAD-AEAIPLAEFGAR 168

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
              HP++ +  NL +A++T  + + +R WERGVG+T A GS++CA+ VA+     T R V
Sbjct: 169 YEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGRKV 228

Query: 247 SVKMLGGGLLIEWHDNNHVFMTG 269
            + + GG + I+W ++  V+MTG
Sbjct: 229 QIDLDGGTIWIDWREDG-VWMTG 250


>gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
          Length = 276

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+  +    FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL ++  + +     +G  + LF+ +    SMGNPH +  V DD+   ++A 
Sbjct: 123 PEFEPANIPL-KANKQENTYILRVGE-STLFIGS---ASMGNPHCVMEV-DDVDTANVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ KH  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       K 
Sbjct: 177 IGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
            + V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 237 GKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
 gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
          Length = 280

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 22/288 (7%)

Query: 8   FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDD-NTHF----DQIMLIHDFQDASVD 61
           F K  G+GN  +++D   C  + +  +    L+    + HF    D ++L+      S D
Sbjct: 3   FTKAHGLGNDFILVD---CFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLL--LPSPSAD 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115
             +RI N DGSE + CGN +RCV ++L  R  +K      ET+ G+++ +    E R   
Sbjct: 58  VSMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRL 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEP L+   IP+     ++  +    G   +        VSMGNPH + FV+D L
Sbjct: 118 VRVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRIT----AVSMGNPHCVIFVQD-L 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G L+  HP F    N+   +V + E + +R WERG G T ACG+ ACA+VVA
Sbjct: 173 DAVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                 T R V+V +  G L IEW +  HV+M+G A++ + G+   +T
Sbjct: 233 GVLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280


>gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
          Length = 278

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 146/279 (52%), Gaps = 16/279 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + +  +     D +    FDQ+  I D + A  
Sbjct: 6   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 64  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 123

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+   M+ D     P+       P  V MGNPH +FFVED +   DL
Sbjct: 124 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-VEAVDL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 173 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T R V ++M GG L ++W D   V+++G   + +EG L
Sbjct: 233 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 270


>gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 277

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 154/284 (54%), Gaps = 19/284 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K+ G+GN  +V++     + + +D         + +F    D ++L+H   DA+ D  
Sbjct: 3   FVKVHGLGNDFVVVN--AMTETLPADLPELARRVCHRYFGIGADGLVLLHK-SDAA-DLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           ++IIN DGSE + CGN +RCV ++   +  +K+     ET+ GI    L+ +      I 
Sbjct: 59  MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP+  S  ++  +  ++G  N  F      VSMGNPH + FV D+   
Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVG--NETF--KVTAVSMGNPHCLIFV-DEAVS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + ++  G  +  H +F    N+    V +   + ++ WERG G T ACG+ ACA+VVA+ 
Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T R V+V + GG LLIEW DNNHV+MTG A++ + G   +
Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277


>gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191]
 gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191]
          Length = 274

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/282 (37%), Positives = 151/282 (53%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62
           ++F K +G+GN  ++ID       I  D +NAL     D +       LI  F  AS D 
Sbjct: 1   MEFVKYQGLGNDFILIDCV----KIKIDGLNALGKKLCDRHFGIGADGLIAVFPSASADY 56

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121
            IRIIN DG+E + CGNG+RC +RF+   +K ++  TFET+ G +  +   +  + VDMG
Sbjct: 57  KIRIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMG 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV----VSMGNPHAIFFVEDDLY 176
            P L    IPL  S    D D   +  PV    L    +    VSMGNPH + FVED + 
Sbjct: 117 APKLTAAQIPLNIS----DSDGRAVDIPVK---LEGGKIKGTGVSMGNPHFVIFVED-IK 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+A  G  +  +  F +  N+   +V +   L ++ WERGVG+T ACG+ ACAS+VA 
Sbjct: 169 KTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277
              +KT R   V++ GG L +EW D+   VFMTG A + + G
Sbjct: 229 VLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270


>gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 274

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K+    T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  VED +   ++ 
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------SAVSMGNPHCVVQVED-IQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V + GG L IEW    H ++MTG A   ++G
Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270


>gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
 gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
          Length = 277

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 22/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+ +GN  +VID       ++SD I  LS        DQ++L    Q    D   R+
Sbjct: 6   FTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDIRYRV 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG+RC+ RFL  +  +++     ET  G+ +     DG+I+V+MG P+
Sbjct: 66  FNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNMGPPV 125

Query: 125 LDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           L+ + IP   +         ++  R  IG            VSMGNPHA+  V DD+   
Sbjct: 126 LEPERIPFRPTKQASEYALALEDKRIMIG-----------AVSMGNPHAVLQV-DDIDSA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + +FG L+ +H  F + VN+   +V S + + LR +ERG G T ACG+ ACA+VV+   
Sbjct: 174 PIDTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  V V + GG L+I W   +  V+MTG A   +EG++ +
Sbjct: 234 RGLLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277


>gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
 gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
          Length = 283

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 148/286 (51%), Gaps = 25/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D I   A  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                 IP     D+ D    +       I PV+         V++GNPHA+  V DD+ 
Sbjct: 125 KFMPSEIPFVPVSDEGDDACIYGVHLESGIQPVS--------CVNIGNPHAVIVV-DDVE 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA 
Sbjct: 176 CAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAG 235

Query: 237 ---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              G L +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 236 IRLGLLDE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
 gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
          Length = 277

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 25/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V+D      +   + +  +  D   HF    D I+++        DA 
Sbjct: 3   FVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCD--RHFGIGADGIIIV--LPSDIADAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI+N DGSE + CGNG+RC  +++  +  +K++  + ET+ GI+  +   +G     + 
Sbjct: 59  MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDD 174
           VDMG+P  +   IP      ++      +          P+ +   SMG PH + FV DD
Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVD-------SQPYAITSMSMGVPHTVIFV-DD 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+   G  + KHP+F +  N++   V +   + +RTWERG G T ACG+ +CAS V
Sbjct: 171 VDEVDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAV 230

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A+    +T RAV+V ++ G L I W +++ VFMTG A K ++G ++
Sbjct: 231 AAAITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276


>gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
          Length = 274

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V        I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
 gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
          Length = 290

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 139/277 (50%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG+GN  +V+D  G   N   D         + H+    DQI+L+        D  
Sbjct: 15  FTKMEGLGNDFVVLD--GVRRNFLLDP-ETCQRIAHRHYGIGCDQILLVEPASSPDCDFR 71

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC   F+       ++S   ET  G L  + + DG+++VDMG
Sbjct: 72  YRIFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMG 131

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P LD   IP  R+    +  R  +G  +H+ L     V MGNPHA+  VED +    +A
Sbjct: 132 VPRLDPADIPF-RAPAAANNYRLDLG-QDHIEL---AAVGMGNPHALLRVED-VRGAPVA 185

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  HP F E  N+    + S  +L LRTWERG G T ACGS ACA+VVA      
Sbjct: 186 EIGPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGA 245

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               V V++ GG L I W     H+ MTG A+  ++G
Sbjct: 246 LRERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDG 282


>gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
 gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
          Length = 274

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  +F+T +    +K  +    +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
 gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
          Length = 310

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 18/283 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T + +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEVQ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDMG
Sbjct: 62  YRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +P  +   IP         ++ + +     PV        +V +MGNPHA+  V DD+  
Sbjct: 122 KPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL------YVANMGNPHAVIKV-DDVLT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
            ++   G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V   V
Sbjct: 175 AEVEKLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             G L +    +  ++ GG L I W +   V+MTG A   +EG
Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEG 276


>gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
 gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
          Length = 277

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 147/287 (51%), Gaps = 22/287 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+      +  + I  L+       FDQ++++   +D  +D  
Sbjct: 2   LLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC  RF L  R+  ++    ET  G L      DG +SVDMG
Sbjct: 62  YRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDMG 121

Query: 122 EPILDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +P    + +P     D+      +D  +  IG           V S+GNPHA+  V DD+
Sbjct: 122 KPRFAPQDLPFEADGDRPLHDLEVDGQQISIG-----------VASLGNPHAVLRV-DDV 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A+ G  +  HP F   VN    +V S   + LR +ERGVG T ACG+ ACA+V  
Sbjct: 170 TTAPVATLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVAC 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                     V+V + GG L I+W D   ++ MTG A++ +EG++ I
Sbjct: 230 GIRQGLLESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276


>gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999]
          Length = 276

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 143/279 (51%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F KM G+GN  +V+D    +   + + I  L+  +    FDQ++L+    D   D  
Sbjct: 2   LVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +   +  T  G ++    +DG ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +P+     +   + + I   +  F      VS+GNPH +  V DD+  YD+ 
Sbjct: 122 RPRFAPDDVPMKA---QKQENTYIIREADQTFFCG--AVSLGNPHCVMVV-DDIDTYDVL 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F + VN+   ++    ++ LR +ERGVG T ACGS ACA+V       K
Sbjct: 176 GVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQGK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKL 279
               V+V + GG L I W  ++H   MTG A+  ++GK+
Sbjct: 236 LGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274


>gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 274

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 138/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  VED +   ++ 
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTVLC------SAVSMGNPHCVVQVED-IQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V + GG L IEW    H ++MTG A   ++G
Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDG 270


>gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
 gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
          Length = 274

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 142/276 (51%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+  +    FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G ++ +   D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      +  L      VVSMGNPH +  VED + H ++  
Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVED-IQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +  V V + GG L+IEW    H ++MTGEA   ++G
Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDG 270


>gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 281

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 22/290 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + + F KMEGIGN  + ID    +  +T + I  +S   N +F    D ++ I + +   
Sbjct: 2   AALKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKIS---NRNFGIGSDGVIFIRNSKQG- 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENR 112
            D  + + N DGS  + CGNG+RCV +++        K+   ET  G+L     +   N+
Sbjct: 58  -DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNK 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +SV+MG+PIL    IP+    ++   D+ F I   N  F      VSMGNPH + FV
Sbjct: 117 VDFVSVNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNLKFT----AVSMGNPHCVIFV 172

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD   + +   G L+ +HP+F + +N+    V   +    RTWERG G T ACG+ ACA
Sbjct: 173 -DDCDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACA 231

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             VA     K+ + V + + GG L I+W ++ +V MTG AK+ + G++++
Sbjct: 232 VTVAGNLTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281


>gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 280

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 155/289 (53%), Gaps = 24/289 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M++  KM G+GN  +V+          SD    L    N HF    D ++ I   ++A  
Sbjct: 1   MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLC---NRHFGIGADGLVYILPSKEA-- 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETI-----RGILVAKEN 111
           D  +RIIN DGSE + CGN +RCV +++        +    T +TI     R  +  K+ 
Sbjct: 56  DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDG 115

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +  ++ VDMGEPIL+   IP   + + + +    +      F      VSMGNPH + +V
Sbjct: 116 KVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVSMGNPHCVIYV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD    +L  +G LL  HP+F + +N+  A V S + + +  WERG G T ACG+ ACA
Sbjct: 172 -DDAVTMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACA 230

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           ++VAS   + T+R  ++ + GG L IEW++ +NHV+MTG A + ++G+L
Sbjct: 231 TLVASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 279


>gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV   GNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
 gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
          Length = 280

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 144/285 (50%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + FAK  G+GN  +++D R  G        A+     +     D ++        S D  
Sbjct: 3   LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDS-DYV 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC+ +FL+      +  +   T  G++V      G ++VDMG
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121

Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLY 176
              L    IP  L  + D++      +G         P+    VSMGNPH I FVED + 
Sbjct: 122 PAYLKPVEIPTTLTGTGDRVVEADLEVG-------DRPWKVTTVSMGNPHCITFVED-VA 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              LA  G L   HP+F +  N     V   + L +R WERG G T ACG+ ACA++VA+
Sbjct: 174 AVPLAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +++R  +V++ GG L IEW ++ H+FMTG A K + G +++
Sbjct: 234 VLTGRSDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMEL 278


>gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
 gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
          Length = 279

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 145/279 (51%), Gaps = 16/279 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + +  +     D +    FDQ+  I D + A  
Sbjct: 7   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 65  DCALDFWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+   M+ D     P+       P  V MGNPH +FFVED     DL
Sbjct: 125 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-AEAVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 174 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T R V ++M GG L ++W D   V+++G   + +EG L
Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 271


>gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
 gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
          Length = 279

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 145/279 (51%), Gaps = 16/279 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + +  +     D +    FDQ+  I D + A  
Sbjct: 7   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 65  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+   M+ D     P+       P  V MGNPH +FFVED     DL
Sbjct: 125 GAPQLLWSEIPLARA---METDSL---PLEG----GPAAVGMGNPHCVFFVED-AEAVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 174 AGRGASVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T R V ++M GG L ++W D   V+++G   + +EG L
Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 271


>gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
 gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
          Length = 282

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 158/289 (54%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + AL+    D N     D ++L+     A V  
Sbjct: 3   FTKMHGLGNSYIYVDL--FKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPVK- 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116
            +R+ N DGSE ++CGNG+RCV +F      +K ++F  ET+ G++ A  + +G    ++
Sbjct: 60  -MRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118

Query: 117 SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +V+MG+P L  + +P L  S +K+  + F +             VSMGNPH +FFVED +
Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELT----AVSMGNPHGVFFVED-I 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++ K   F E +N+    V S   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 174 NQAPVDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVA 233

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           S     +N+  +V+V +LGG L IEW ++  V MTG A+   EG  + K
Sbjct: 234 SILNGHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFERK 282


>gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 276

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DPHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA  VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 291

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 141/276 (51%), Gaps = 12/276 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+  +GN  ++I+    +      A+ A         D ++++   Q A  D  +R
Sbjct: 1   MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI---LVAKENRDGSISVDM 120
           I N DGSE ++CGNG+RC+V+++       ++  T ET  G+    ++    D  I   M
Sbjct: 59  IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118

Query: 121 GEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           GEPIL+   IP+     +  +       +   VN       F VSMGNPHAI F+E DL 
Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTLAF-VSMGNPHAIEFIESDLE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + L   G  + KH MF    N  IARV     +++R WERGVG T ACGS ACA VVAS
Sbjct: 178 AFPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVVVAS 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
             +  T   V +K+ GG L  EW +   V++TG A+
Sbjct: 238 WIMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQ 273


>gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
 gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
          Length = 274

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/282 (37%), Positives = 145/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T ACGS A A+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15]
          Length = 304

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 18/289 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           Q  M+ F KM G+GN  +V+D       +  + I  L+  +    FDQ++++       V
Sbjct: 8   QGPMLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDV 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    +K    +T +G++  +  R+G + V
Sbjct: 68  DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI---GPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +MG P  +   IP A    K   D + +   G    L       +SMGNPH +  VED +
Sbjct: 128 NMGVPEFNPPAIPFAADRRK---DVYTVDVDGQTVELS-----ALSMGNPHGVLLVED-V 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G  L +HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA
Sbjct: 179 DQAPVETLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVA 238

Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
            GCL     A V V++ GG L+IEW  +   V M G A   +EG+L + 
Sbjct: 239 -GCLRGLLDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286


>gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304]
 gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579]
 gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149]
 gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33]
          Length = 283

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13]
          Length = 284

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 151/278 (54%), Gaps = 19/278 (6%)

Query: 7   DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++M   +   + +++ A+   +       D ++LI   + A V   
Sbjct: 5   QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEVAPVK-- 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++      ++RK+F  ET+ G++ A+   +     S++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAGKVTSVT 122

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L  K IP L    + +  + F +    +        VSMGNPH IF++ DD+ 
Sbjct: 123 VDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEIT----TVSMGNPHVIFYL-DDIK 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K P F EGVN+    V + + L  R WERG G+T ACG+ ACA+VVAS
Sbjct: 178 DAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGACAAVVAS 237

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
              +KT  N+   V + GG L I W  +  V M G A+
Sbjct: 238 VLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAE 275


>gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis
           alpha710]
 gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190]
 gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902]
          Length = 283

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 RFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
 gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
          Length = 278

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 148/283 (52%), Gaps = 14/283 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           S ++ F KM G+GN  +V+D  G   N+  + D I  L+  +    FDQ++L+    D  
Sbjct: 2   SILIQFTKMHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPD 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++
Sbjct: 60  LDFHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L+   IP   +  K+++    +             VSMGNPH +  VED +  
Sbjct: 120 VNMGIPALEPGKIPF--TAKKVEKTYLLMASSGTYLCG---AVSMGNPHCVIEVED-VAA 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV   
Sbjct: 174 TDVDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              K +R V V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 234 LQGKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276


>gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
 gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
          Length = 276

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DG+EV+ CGNG RC  RF+  RMK    +   +  T  G L     +DG ++V+
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IPL  S  ++    + I    H        VSMGNPH +  V DD+    
Sbjct: 120 MGHPNFEPSKIPLKASKRELT---YIIRAEEHTVFSG--AVSMGNPHCVIEV-DDITTAQ 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     
Sbjct: 174 VDVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            K + AV V + GG L I W    H V MTG A+  ++G++ +
Sbjct: 234 SKLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
 gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
          Length = 276

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 145/284 (51%), Gaps = 16/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  I  D I  L+  +    FDQ++++    D  +D  
Sbjct: 2   LVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DG+EV+ CGNG RC  RF+  RMK    R      T  G +     +DG +SV+
Sbjct: 62  YRIFNSDGTEVEQCGNGARCFARFV--RMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG+P L+   IP    F    R+  +I    +H        VSMGNPH +  V DD+   
Sbjct: 120 MGQPKLEPHTIP----FKAAKRENTYIFRAQDHTVFCG--AVSMGNPHCVVEV-DDITTA 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL  H  F +  N+   ++ S E + LR WERG G T ACG+ ACA+VV    
Sbjct: 173 PVNVLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGIL 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             K    V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 233 QKKLAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276


>gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945]
 gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136]
          Length = 283

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 145/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
 gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
          Length = 283

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 145/280 (51%), Gaps = 13/280 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  +VID      N T + +      D      FDQ++++   +   VD   
Sbjct: 6   FTKMHGLGNDFMVID--AVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEGVDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +K    ET +G++  K + +G ++V+MG+
Sbjct: 64  RIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGK 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +  
Sbjct: 124 PKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITV-DDVECAPVRE 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239
            G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L
Sbjct: 182 TGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLL 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 242 DE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
          Length = 277

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 143/277 (51%), Gaps = 13/277 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D      ++T + I  LS       F+Q++++    D S+D   RI
Sbjct: 3   FSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHCRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV  CGNG+RCV RF+  +    +++    T  G +      D  ISV+MGEPI
Sbjct: 63  YNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGEPI 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            +   IP    F +  ++     P   +      VVS+GNPH I  VE  +    L   G
Sbjct: 123 FEPDKIPFI--FPQYQKNYILFLPTQTILCG---VVSIGNPHCIVLVE-TIESVSLNILG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHK 241
             L  H  F +  N+S  R+   E+++LR +ERGVG T ACGSAACA+V   +  G L +
Sbjct: 177 PALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLLIR 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             R V V +LGG L + W    + ++M G     ++G
Sbjct: 237 EERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDG 273


>gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 278

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 147/288 (51%), Gaps = 24/288 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDAF 63
           + F+KM G+GN  +VID      +++ D +  L+        DQ++L+    D A+ D  
Sbjct: 3   IQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC   F+  R    +     ET  GI+  +   DG ++VDMG
Sbjct: 63  YRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMG 122

Query: 122 EPILDWKLIPLA-----RSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            P L    IP        S+  +++ + + IG            VSMGNPHA+  V D++
Sbjct: 123 PPRLKPWQIPFEAESAMTSYPLEVEGETYEIG-----------AVSMGNPHAVLRV-DNV 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A  G L+  HP F   VN+   +V S   + LR +ERGVG T ACG+ ACA+VV+
Sbjct: 171 QTAPVARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVS 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
                  +  V+V + GG L+I W   +   V MTG A + + G +DI
Sbjct: 231 GRIQGLLDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278


>gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
 gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
          Length = 278

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 64  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  D + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++
Sbjct: 124 EPNFDPQSVP----FRATKAEKTYIFRAAEHTVLCG--VVSMGNPHCVLQV-DDVSVANV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G +L  H  F E  N+   +V S E++ LR +ERG G T ACGS ACA+V       
Sbjct: 177 ALLGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQE 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             +  V+V++ GG LLI W    H ++MTG A   ++G
Sbjct: 237 LLDEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDG 274


>gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336]
 gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336]
          Length = 274

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/276 (34%), Positives = 140/276 (50%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+  +    FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      +  L      VVSMGNPH +  VED + H ++  
Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVED-IQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V + GG L+IEW    H ++MTGEA   ++G
Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDG 270


>gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
 gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
          Length = 276

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/279 (38%), Positives = 144/279 (51%), Gaps = 16/279 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + +  +     D +    FDQ+  I D + A  
Sbjct: 4   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRDQEGA-- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R      T RG L A+   DG ++V+M
Sbjct: 62  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+   M+ D     P+       P  V MGNPH I+FVED     DL
Sbjct: 122 GAPQLLWSEIPLARA---METDSL---PLEG----TPSAVGMGNPHCIYFVED-AEAVDL 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 171 AGRGAAVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T R V ++M GG L ++W D   V+++G   + +EG L
Sbjct: 231 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHL 268


>gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
          Length = 279

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 145/283 (51%), Gaps = 18/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K +G GN  ++++  G  + +  D         + H+    D ++L+   Q A  D  
Sbjct: 5   FTKWQGCGNDFVLVN--GFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           +RI N DG+E + CGNG+RC    + +        FT ET  GILV +    GS    + 
Sbjct: 61  MRIFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVR 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+ + IP+   F         I      F      VSMGNPH + FVED    
Sbjct: 121 VDMGEPILEGERIPVL-GFGASRVIEQPIEAEGETFSMT--CVSMGNPHCVIFVED-AQD 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  FG LL +H  F +  N+  A +     + +R WERG  +T ACG+ +CA++VA+ 
Sbjct: 177 VPMEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAA 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +T R   V++ GG L IEW +N+HV+MTG A+K + G+ +
Sbjct: 237 LTGRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279


>gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 287

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 137/288 (47%), Gaps = 15/288 (5%)

Query: 4   SMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN   VID +    D   +             FDQ++L+        D 
Sbjct: 2   AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++VDM
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121

Query: 121 GEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           G+P L    IP       + D +  D    G    + L     V+MGNPHA+  V DD  
Sbjct: 122 GKPRLRPSEIPFLPAEGAAEDALRHDIAANGAAVSVGL-----VNMGNPHAVLTV-DDTD 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV-- 234
              +A+ G  L  HP F E  N+   +V     + LR +ERGVG T ACG+ ACA+VV  
Sbjct: 176 AAPVATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHG 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               L      V V + GG L I W +   V MTG A+  ++G +  +
Sbjct: 236 VRLGLLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVISYQ 283


>gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
 gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
          Length = 274

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 145/281 (51%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D        + D I  L+  +    FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  L     +K     T +G +V   N D ++ V+MGE
Sbjct: 61  RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120

Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P +A  F+K    R  I  V         VVSMGNPH +  VED +   ++ 
Sbjct: 121 PIWEPAKVPFIANKFEKNYILRTDIQTVLC------GVVSMGNPHCVLQVED-VKTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F    N+   +V + + + LR +ERG G T ACG+ ACA+V        
Sbjct: 174 QLGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V++ GG L+IEW    + ++MTG+A   ++G + +
Sbjct: 234 LDNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274


>gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305]
 gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305]
          Length = 274

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 140/283 (49%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   IP  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQIPFTANKFEK------------NYILRTSLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 QTAPVNELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L+IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGLLDSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDG 270


>gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568]
 gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399]
          Length = 283

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355]
 gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196]
          Length = 283

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
 gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
          Length = 278

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 11/276 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA-SVDAFIRI 66
           F K  G+GN  ++ID R     I +        D N       +I         D  +RI
Sbjct: 5   FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSE + CGNG+RC+ +F+       +  +   T  GI+V +   DG ++VDMG+P 
Sbjct: 65  FNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPR 124

Query: 125 LDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           L    IP  LA + DK+      +G  +         VSMGNPH I FVED +   DLA 
Sbjct: 125 LLASEIPTTLANADDKVVDQLLEVGGKSWFVT----CVSMGNPHCITFVED-VTAIDLAK 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     +P+F E  N    +V S + + +R WERG G T ACG+ ACASVVA       
Sbjct: 180 IGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNN 239

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            R V+V++ GG L IEW   +  ++MTG A+K + G
Sbjct: 240 ERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTG 275


>gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
 gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
          Length = 276

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DG EV+ CGNG RC  RF+  RMK    +   +  T  G L     +DG ++V+
Sbjct: 62  YRIFNADGHEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IPL  +  ++    + I    H        VSMGNPH +  V DD+    
Sbjct: 120 MGHPNFEPSKIPLKATKRELT---YIIRAEEHTVFSG--AVSMGNPHCVMEV-DDIETAQ 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +++ G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     
Sbjct: 174 VSTLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +K    V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 234 NKLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           WUE 2594]
          Length = 283

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAQVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
 gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
          Length = 287

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 9/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64
           ++F K  G+GN  ++ID R   + I +        D +       +I     D + D  +
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
           RI N DGSE + CGNG+RC+ +F+T    +     ++   T  G++  +   DG + VDM
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP   S + +      +     +       VSMGNPH I FV DD+    L
Sbjct: 123 GLPRLLAAEIPTTLSENNLKVIDVPLEVAGQVLSVT--CVSMGNPHCITFV-DDVASVPL 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA     
Sbjct: 180 TEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLTQ 239

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L
Sbjct: 240 RCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279


>gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
 gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
          Length = 281

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 19/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  ++ID R   D + S  +     D   HF    D ++ +        D
Sbjct: 3   IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDR--HFGIGADGVIFVLP-GTPQTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+ +F+     +    K++  +T+ G++  +   +  ++
Sbjct: 60  YQMRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVT 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L    IP  L  + +K+      +G  + L       VSMGNPH I FVE+ +
Sbjct: 120 VDMGPPQLQAAQIPTTLVTATEKVINQPLSVGGKSWLVT----CVSMGNPHCITFVEN-V 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G     H  F +  N     V   + L +R WERG G+T ACG+ ACA+VVA
Sbjct: 175 DEIPLEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277
               H+++R  +V++ GG L I W + + HV+MTG AK+ + G
Sbjct: 235 GLLTHRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277


>gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640]
 gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06]
          Length = 283

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/280 (37%), Positives = 145/280 (51%), Gaps = 13/280 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDD--NTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  +VID      N T  DA  A   D      FDQ++++   +   VD   
Sbjct: 6   FTKMHGLGNDFMVID--AVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K    ET +G++  K + +G ++V+MG+
Sbjct: 64  RIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGK 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +  
Sbjct: 124 PKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRE 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239
            G L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L
Sbjct: 182 TGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLL 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 242 DE-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 276

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DG+EV+ CGNG RC  RF+  RMK    +   +  T  G L     +DG ++V+
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IPL  S  ++    + I    H        VSMGNPH +  V DD+    
Sbjct: 120 MGHPNFEPSKIPLKASKRELT---YIIRTQEHTVFSG--AVSMGNPHCVLEV-DDVTTAQ 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     
Sbjct: 174 VDILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +K +  V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 234 NKLSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2]
          Length = 276

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + D I  L+  +    FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IPL  +     ++  +I  VN   LF      VSMGNPH +  VED +    +
Sbjct: 123 PEFEPAKIPLKAN----KQENTYILRVNDKTLFYG---AVSMGNPHCVMEVED-VDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ ++  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 KEIGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K ++ V V + GG L I W   ++V  MTG A   ++G +++
Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276


>gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
 gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
          Length = 278

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 151/286 (52%), Gaps = 25/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61
           F KMEG+GN  + I+   C      +         + HF    D ++LI   D  D ++D
Sbjct: 3   FTKMEGLGNDYVYIN---CFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKADFTMD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
            +    N DGS  + CGNG+RCV +++       + S + ET+ GI     V K+ +   
Sbjct: 60  MY----NADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDM 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG PIL    +P+    +++  ++  +  V++        VSMGNPHA+ FV DD 
Sbjct: 116 VTVDMGAPILKADQVPVRSDKEQVIDEKITVAGVDYHMT----CVSMGNPHAVMFV-DDT 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H+ L   G L   H +F   VN    +V    ++ +R WERG G T ACG+ ACA+ VA
Sbjct: 171 EHFPLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVA 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
                KT+  V+VK+LGG L+I +  +NN V+MTG A+  ++G+ D
Sbjct: 231 CVLNGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276


>gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013]
          Length = 301

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 24  FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 82

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 83  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 143 RFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 201 GSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 261 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298


>gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           8013]
          Length = 283

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202]
 gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202]
          Length = 274

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 140/283 (49%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   IP  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQIPFTANKFEK------------NYILRTSLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 KTAPVNELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L+IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGLLDSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDG 270


>gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
 gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
          Length = 281

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 146/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R      ITS+ A+     +     D ++     Q+ + D  
Sbjct: 1   MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQEGT-DYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ +FL        +  +   T+ G+++ +   DG + VDM
Sbjct: 60  MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119

Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P L    IP  LA +  K+      I       L     VSMGNPH I FVED     
Sbjct: 120 GMPQLSAAQIPTVLAEADQKVINTPIEIADK----LWEVTCVSMGNPHCITFVED-ADAI 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G L   H +F +  N    +V   + L +R WERG G T ACG+ ACASVVA   
Sbjct: 175 PLETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             K++R  +V++ GG L IEW + +  V+MTG A++ + GKL
Sbjct: 235 TQKSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKL 276


>gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39]
          Length = 295

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64
           ++F K  G+GN  ++ID R   + I +        D +       +I     D + D  +
Sbjct: 11  IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
           RI N DGSE + CGNG+RC+ +F+     +     ++   T  G++  +   DG + VDM
Sbjct: 71  RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177
           G P L    IP   S      +   +  V       P+    VSMGNPH I FV DD+  
Sbjct: 131 GLPRLLAAEIPTTLS-----ENSLKVIDVPLQVAGQPWSVTCVSMGNPHCITFV-DDVAS 184

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 185 VPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGV 244

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
              + +R V+V++ GG L IEW   +  ++MTG A++ ++G+L
Sbjct: 245 LTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQL 287


>gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125]
 gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125]
          Length = 286

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 26/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGC------HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           F KM G+GN  + +D   C       + + + A+     +     D ++LI     A V 
Sbjct: 3   FTKMHGLGNSYIYVD---CFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPVK 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDG--- 114
             +R+ N DGSE ++CGNG+RCV +F      +K  SF  ET+ G++ A    N +G   
Sbjct: 60  --MRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVD 117

Query: 115 SISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           +++V+MGEP L    IP L     ++  + F IG   +        VSMGNPHAI F+ D
Sbjct: 118 TVTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRLT----AVSMGNPHAIMFI-D 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    +   G LL KH  F + VN+   +V S   +  R WERG G+T ACG+ ACA+V
Sbjct: 173 TIEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAV 232

Query: 234 VAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VAS      +  + V+V +LGG L I W +N  V MTG A+   EG
Sbjct: 233 VASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEG 278


>gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
          Length = 278

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/278 (37%), Positives = 143/278 (51%), Gaps = 15/278 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           +S + F KM G GN  +VID RG    +++    AL        FDQ+  I D + A  D
Sbjct: 7   TSGLGFMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHEGA--D 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RCV  ++   + R +    T RG L A    DG +SV+MG
Sbjct: 65  FALDFWNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPLAR           + P +      P  V MGNPH IFFVED     DLA
Sbjct: 125 APQLLWSEIPLARD----------VVPDSLPLAGAPAAVGMGNPHCIFFVED-AEAVDLA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +   P+F E  N+  A + + + L LR WERG G+T ACGS ACA+ VA+     
Sbjct: 174 GQGAAVETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T R V ++M GG L ++W ++  V+++G     +EG+L
Sbjct: 234 TGRQVVLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRL 270


>gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385]
          Length = 301

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 24  FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 82

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 83  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 143 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 201 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 261 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298


>gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
 gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
          Length = 283

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 149/283 (52%), Gaps = 17/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  +V++  G  +++      A    D       D I+L+        D  +
Sbjct: 6   FTKMHGLGNDFIVVN--GFKEDVRIIFKKAEKICDRHVGIGADGILLV--LPSDKCDLKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118
           RIIN DGSE   CGNG+RC  R+  SR  + + S T ET+ G++    + K++R  S+ V
Sbjct: 62  RIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVRV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG   L  K IP+A + ++   D   I   + +F      VSMGNPH + FV DD+  +
Sbjct: 122 DMGCYSLQKKDIPVAGNPNEEAVD-LEISVDDRVFKFTG--VSMGNPHCVIFV-DDVESF 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  FG ++ +HP+F +  N+        + L +R WERG GLT ACG+ ACAS VA+  
Sbjct: 178 PVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAYK 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                  V+V + GG L IE   N  V+MTG A + + G +D+
Sbjct: 238 KGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDL 280


>gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
 gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
          Length = 283

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
 gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
          Length = 290

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 156/292 (53%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++    D +T    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116
            +RI N DGSE ++CGNG+RCV ++      ++ +SF  ET+ G++ A+   EN +  S+
Sbjct: 63  -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSV 121

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++DMGEP L    IP+     +++  + F I    +        VSMGNPH IF+V DD+
Sbjct: 122 TIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT----AVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++ K   F EGVN+    V S   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           S    KT R V   V + GG L I W  +  V MTG A+    G    + G+
Sbjct: 237 SVLNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQ 288


>gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
 gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
          Length = 283

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 47/300 (15%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---------NTHFDQIMLIH 53
           ++++ F+KM+G+GN  +VID  G  + IT      LST++            FDQ++++ 
Sbjct: 2   TNLLKFSKMQGLGNDFMVID--GTQETIT------LSTEEIRFWANRYFGVGFDQLLMVE 53

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111
           +     VD   RI N DGSEVQ CGNG RC  +F+  +    +     ET  G++V    
Sbjct: 54  NSAQGDVDFRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYIT 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFD----------KMDRDRFHIGPVNHLFLRNPFVVS 161
             G + V+MG P      +P A  FD           +D +RF IG            VS
Sbjct: 114 DQGWVRVNMGAP----NFLPEALPFDMPLESEQYELDVDGERFEIG-----------AVS 158

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+  V D L    +A  G  +  H +F E VN+  A     + + LR +ERG   
Sbjct: 159 MGNPHAVLRVAD-LGAAPVAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAE 217

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA++V    L + +  V+V + GG L IEW+   ++ V+MTG A   +EG++
Sbjct: 218 TLACGTGACAAMVVLRNLGEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277


>gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
 gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
          Length = 282

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 17/282 (6%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID  R   D   +             FDQ++++   Q   VD   RI
Sbjct: 6   FSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFGYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC V+F+T +    ++    +T +GI+  + N DG ++V+MG+P 
Sbjct: 66  FNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMGQPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-----PFVVSMGNPHAIFFVEDDLYHYD 179
              + +P         R    +G V+++ +++       +V+MGNPHA+ +V  ++    
Sbjct: 126 FAPEDVPFVL------RSGEQVGAVSYIVVKDLDSAEMSLVNMGNPHAVMWV-GNVDDAP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + S+G  L  H  F + VN+   +V     + LR +ERG G T ACG+ ACA+VVA   L
Sbjct: 179 VESWGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRL 238

Query: 240 H--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +   V V + GG L I W + + V M G A   + G+L
Sbjct: 239 GAVASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGEL 280


>gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
 gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 12/275 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN  +V+D R              +  D   FDQ++++    DA  DA +R+ N D
Sbjct: 1   MNGAGNAFIVLDRRDASGPAAYGESGIAALLDVHPFDQLIVLDPSSDA--DADLRVWNRD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G EV +CGNG R     L     +   +F +  G + A+   DG+  VD+G   LDW+ I
Sbjct: 59  GGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWRDI 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+   D M  D F +   +   L  P  VSMGNPH +F V DD+    LA  G  +   
Sbjct: 119 PLSLPMDTMRLD-FGVNLPDGGRLEGPGAVSMGNPHVVFAV-DDVLALPLAEIGPCIEHD 176

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK---TNRAVS 247
           P+F + VN   A+V   + + L+ +ERG GLT ACG+ ACA++VA   LH+    NR   
Sbjct: 177 PLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVA---LHRQGLVNREAV 233

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           ++  GG L + W    HV ++G    E E  LD++
Sbjct: 234 IEADGGKLPVRWDTEGHVHLSGPVVLERE--LDLR 266


>gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
 gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
          Length = 276

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 146/285 (51%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + D I  L+ D NT   FDQ++++    D   D  
Sbjct: 3   IQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLA-DRNTGVGFDQLLVVEPPYDPESDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N D SEV  CGNG RC  RF+  RMK    +      T  G +V K + D  ++V+
Sbjct: 62  YRIFNADSSEVAQCGNGARCFARFV--RMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177
           MGEPI     IP    F     ++ +I  V    L   FV  VSMGNPH +  V D++  
Sbjct: 120 MGEPIWAPAKIP----FRANAEEKTYILRVEDTTL---FVGAVSMGNPHCVTVV-DNVDT 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+   G L+  H  F E VN    ++ S   + LR +ERG G T ACGS ACA+V    
Sbjct: 172 FDVEGLGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGI 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                + +V+V + GG L I W    H ++MTG A   ++G++ +
Sbjct: 232 QQGLLDESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276


>gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
 gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
          Length = 284

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFI 64
           ++F K +G+GN  ++ID R   + + +        D N       +I      S  D  +
Sbjct: 3   IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTSNTDYTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRDG 114
           RI N D SE Q CGNG+RC+ +F+     R           S+  +T+ G++  +   DG
Sbjct: 63  RIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILADG 122

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMG+P L    IP   +  K D    ++             VSMGNPH I FVED 
Sbjct: 123 QVKVDMGQPRLLAVEIP--TTLTKADEKVVNVPLSVAEQSWKVTCVSMGNPHCITFVED- 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    LA  G     HP F E  N    +V   + L +R WERG G T ACG+ ACA VV
Sbjct: 180 VAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACAVVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           A       +R+V+V++ GG L+IEW  +  ++M+G A++ + G+
Sbjct: 240 AGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQ 283


>gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca]
          Length = 286

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFI 64
           ++F K  G+GN  ++ID R   + I +        D +       +I     D + D  +
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
           RI N DGSE + CGNG+RC+ +F+     +     ++   T  G++  +   DG + VDM
Sbjct: 63  RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177
           G P L    IP       +  +   +  V       P+    VSMGNPH I FV DD+  
Sbjct: 123 GLPRLLAAEIP-----TTLSENSLKVIDVPLQVAGQPWSVTCVSMGNPHCITFV-DDVAS 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 VPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
              + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L
Sbjct: 237 LTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279


>gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
 gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
          Length = 283

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAV-SQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+T +    +K    ET +G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G L+  H  F E VN+   +V     + LR +ERGVG T ACG+ ACA+V A    G L 
Sbjct: 183 GPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + +   + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280


>gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/282 (37%), Positives = 144/282 (51%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
           + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1   MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV   GNG RC  RF+T +    +K  +  T +G +V     D  I 
Sbjct: 56  LDFHYRIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIR 115

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+ 
Sbjct: 116 VNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV-DDIQ 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    ++ + E + LR +ERG G T A GS ACA+V   
Sbjct: 169 TANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                 N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 229 IMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 270


>gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 277

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 151/285 (52%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++    H    S+    +S   + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYVNCFQEHIENPSEVSRRIS---DRHFGIGSDGLILIKSSEKA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD-GSIS 117
           + + N DGS+   CGNGMRCV ++     LT + +    T   I+ + +  EN+    + 
Sbjct: 58  MEMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP+L+ K IP+    +K+    F++G   +        VSMGNPHA+ +V D++ +
Sbjct: 118 VNMGEPVLETKAIPMIYEGEKVISQPFNVGQDIYEIT----AVSMGNPHAVVYV-DNVKN 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS 
Sbjct: 173 LPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 233 LNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
 gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
          Length = 301

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 24  FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 82

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 83  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 142

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 143 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 200

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 201 GSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 260

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 261 E-GKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298


>gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3]
 gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3]
          Length = 269

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  +V+D  G   N+  + D I  L+  +    FDQ++L+    D  +D   RI 
Sbjct: 1   MHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+MG P+L
Sbjct: 59  NADGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPML 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +   IP   +  K+++    +             VSMGNPH +  V DD+ + D+ + G+
Sbjct: 119 EPSKIPF--NAKKVEKTYLLMASTGTYLCG---AVSMGNPHCVIDV-DDVANTDVDTIGS 172

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K  R 
Sbjct: 173 ELTQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERN 232

Query: 246 VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           V V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 233 VRVDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267


>gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 249

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 15/239 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETI---- 102
           L++       D  +RIIN DGSE + CGN +RCV +++        +    T +TI    
Sbjct: 15  LVYILPSKESDFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGI 74

Query: 103 -RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            R  +  K+ +  ++ VDMGEPIL+   IP   + + + +    +      F      VS
Sbjct: 75  QRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVS 130

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH + +V DD    +L  +G LL  HP+F + +N+  A V S + + +R WERG G 
Sbjct: 131 MGNPHCVIYV-DDAVTMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMRVWERGAGP 189

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA++VAS   + T+R  ++ + GG L IEW++ +NHV+MTG A + ++G+L
Sbjct: 190 TLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 248


>gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
 gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
          Length = 274

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  D + +P    F  +  +R +I     H  L    VVSMGNPH +  V DD+   ++
Sbjct: 120 EPNFDPQTVP----FKAIKAERTYIFRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V       
Sbjct: 173 ALLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQE 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 233 LLSEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7]
 gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7]
          Length = 277

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 153/286 (53%), Gaps = 23/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  + +D          + I+   +D   HF    D ++LI   + A  D  
Sbjct: 3   FTKMHGLGNDYIYVDATSQKIE-NPNEISRFVSD--RHFGIGSDGLVLILPSEIA--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV +F+  +    + + T ET+ GI    +  + ++   + 
Sbjct: 58  MRMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVK 117

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEPIL  + IP L+     +D +   I   ++ +  N   VSMGNPHAI ++E+ + 
Sbjct: 118 VDMGEPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VS 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS
Sbjct: 172 EFPLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVAS 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                  R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 232 VLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
          Length = 283

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    D   A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
 gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
          Length = 276

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    H ++T + I  L        FDQ++L+     +  D   
Sbjct: 3   LKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +    + +   ET +G++V +   DG+++VDMG 
Sbjct: 63  RIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP   + + +       G    +      VVSMGNPHA+  V D +  + +A 
Sbjct: 123 PRFKPVEIPFVAAEEALTYPLDAAGRQCDIS-----VVSMGNPHAVQVVAD-VDTFPVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E VN    ++ S E + LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 LGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W      V MTG A   + G++ +
Sbjct: 237 DHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276


>gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
 gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
          Length = 276

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DG+EV+ CGNG RC  RF+  RMK    +   T  T  G L     +DG ++V+
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFV--RMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IPL  +  ++    + I    H        VSMGNPH +  V DD+    
Sbjct: 120 MGHPNFEPSKIPLKATKRELT---YIIRTEEHTVFSG--AVSMGNPHCVLEV-DDITTAQ 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     
Sbjct: 174 VDILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +K    V V + GG L I W+   H V MTG A+  ++G++ +
Sbjct: 234 NKLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276


>gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa]
 gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 13/283 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFIRI 66
           F K  G+GN  +++D R   +   +    A   D N       +I      +  D  +RI
Sbjct: 3   FVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPGINGTDYTMRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSE + CGNG+RC  RF+        K+ SF+  T  G++V +   DG + VDMGE
Sbjct: 63  FNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVDMGE 122

Query: 123 PILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           P+L    +P   + +K D   +    +  V      N   VSMGNPH + F +  +   +
Sbjct: 123 PVLKAADVPTKLAANKNDAVVKSELVVDGVTW----NVTCVSMGNPHCVTFGDLQVDSLN 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA+VVA+   
Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               R  +V + GG L IEW  ++NHV+MTG A+  ++G + +
Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281


>gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 274

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180
           P+ + + +P    F     ++ +I        R  F  VVSMGNPH +  V DD+   ++
Sbjct: 121 PVFEPQQVP----FRAAKPEKTYILRAEE---RTVFCGVVSMGNPHCVLQV-DDVLTAEV 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G +L  H  F E VN+   ++ S ES+ LR +ERG G T ACGS ACA+V       
Sbjct: 173 EVLGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                V V++ GG L I W    H ++MTG A   ++G
Sbjct: 233 LLAEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDG 270


>gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
 gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
          Length = 286

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 24/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G GN  +VI+    +  +TS  I  L+  +    FDQ+++I     A  +   
Sbjct: 7   IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVDM 120
           RI N DGSEV  CGNG RC   +L  RMK+ S     T ET  G++V    +DG ISVDM
Sbjct: 67  RIFNADGSEVSQCGNGARCFFHYL--RMKKLSSSNEITVETQSGMIVLSYKKDGLISVDM 124

Query: 121 GEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           G P+ D+K IP   +   +     D   +   P+           SMGNPHA+  +   L
Sbjct: 125 GVPVYDYKQIPFISTNTTLPTVTVDDKSYEFYPI-----------SMGNPHAVIKLAS-L 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL   G +L K   F + VN+   +V    +L L+ +ERG G+T ACGS ACA+ V 
Sbjct: 173 QGVDLVKIGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVV 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +         VSV + GG L I       V + G A+  ++G+L+
Sbjct: 233 AIQKRWAQNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277


>gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
 gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
          Length = 276

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 22/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +VID       +T+  +  ++        DQ++L+      ++D   
Sbjct: 3   IAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  R    + +   +T  GI+  +   DG I+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDMGV 122

Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P    + IP     +      ++D  +  IG           VVS+GNPH +  V   + 
Sbjct: 123 PRFAPQQIPFKVDHEADYYSLELDGQQLEIG-----------VVSLGNPHCVLRVPA-VD 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+VV  
Sbjct: 171 AAPVAHWGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIG 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V + GG L I W  D   V+M+G A+  +EG  D+
Sbjct: 231 KRRGWLSGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276


>gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium]
          Length = 270

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 17/282 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D    + + +++ I AL+       FDQ+++I       VD  
Sbjct: 1   MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
             I N DGSEV+ CGNG RC  RF+  +    +   + ET  G++    N D S+ VDMG
Sbjct: 61  YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120

Query: 122 EPILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           EP+ +   +PL    + +    + + +G           V S GNPH +  V DD+   D
Sbjct: 121 EPVFNPSDVPLIAPEESLYYSIEGYEVG-----------VFSTGNPHCVMIV-DDVEGVD 168

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + +    + +  +     N+   ++ S   ++LR +ERG G T ACGS ACA+V+    +
Sbjct: 169 VETIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRI 228

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +  V+  + GG  LIE++   HVF++G A+  +EG +D+
Sbjct: 229 GQLDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270


>gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 277

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++    H    S+    +S   + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYVNCFQEHIENPSEVSRRIS---DRHFGIGSDGLILIKSSEKA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD-GSIS 117
           + + N DGS+   CGNGMRCV ++     LT + +    T   I+ + +  EN+    + 
Sbjct: 58  MEMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP+L+ K IP+    +K+    F++G   +        VSMGNPHA+ +V D++  
Sbjct: 118 VNMGEPVLETKAIPMIYDGEKVISQPFNVGQDIYEIT----AVSMGNPHAVVYV-DNVKS 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS 
Sbjct: 173 LPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 233 LNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
 gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
          Length = 277

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 152/284 (53%), Gaps = 21/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG GN  + ++     D    D         N HF    D +++I+    A  D  
Sbjct: 3   FTKMEGCGNDYVYVN---GFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKS-FTFETIRGI----LVAKENRDGSIS 117
           + + N DGSE + CGNG+RCV +++  ++M  K+  T ET+ GI    L  ++++  ++ 
Sbjct: 58  MSMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL+   +P+    DK+  +   +    +        VSMGNPHAI FV DD+  
Sbjct: 118 VNMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRIT----CVSMGNPHAITFV-DDIDS 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G +  K  +F E VN    +V S + + +R WERG G T ACG+ ACASVVA  
Sbjct: 173 LDIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
               T   V+VK+LGG L IE++ D N V+MTG A+  + G+ +
Sbjct: 233 LNGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276


>gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
 gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
          Length = 279

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+   + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 1   MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DGSEV  CGNG RC  RF+T +    +K  T  T  G ++     +  + 
Sbjct: 61  QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP +A  F+K    R  I  V         VVSMGNPH +  V DD+ 
Sbjct: 121 VNMGEPIWEPAKIPFVANKFEKNYILRTDIQTVLC------GVVSMGNPHCVVQV-DDIK 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V   
Sbjct: 174 TANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
                 +  V V + GG L IEW      +FMTGEA   ++G
Sbjct: 234 IMQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDG 275


>gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
 gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
          Length = 288

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 146/292 (50%), Gaps = 23/292 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F KM G GN  +V+D  G H   ++T     AL+   N HF    DQI+++       
Sbjct: 3   LQFTKMHGAGNDFIVLD--GIHQKLDLTDAQWRALA---NRHFGIGADQILIVEKSSRDD 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI+N DG EV+ CGNG RC VRF+T R    ++S   E + G++  K   DG ++
Sbjct: 58  VDFRYRIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVT 117

Query: 118 VDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVE 172
           VDMGEP L    +P            +D  +   VN    R  ++  VSMGNPHA+  V 
Sbjct: 118 VDMGEPELTPARVPFIADGLPTRAEAQDTLYGLEVNG---RTEWISPVSMGNPHAVQIV- 173

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+  + +   G ++  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+
Sbjct: 174 DDVEQFPVLQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAA 233

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           VVA       +  V V   GG L I W      V MTG A   +EG +D+ T
Sbjct: 234 VVAGIRRGLLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLST 285


>gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
 gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
          Length = 287

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 140/285 (49%), Gaps = 22/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KME +GN  +V+D      ++T + I  L+        DQ+++       + D   RI
Sbjct: 3   FTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRYRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG+EV+ CGNG+RC+ RFL             ET   I  A+   DG +SVDMG P 
Sbjct: 63  FNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGPPE 122

Query: 125 LDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           L+   IP      +        R    IG            VSMGNPHA+  V DD+   
Sbjct: 123 LEPARIPFQAPVRQEAYRLATSRGEQTIG-----------AVSMGNPHAVLRV-DDMTGA 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A  G  + +HP F   VN+    V + + + LR +ERGVG T ACG+ ACA+VVA   
Sbjct: 171 PVAELGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRL 230

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
               +  V+V++ GG L+I W      V+MTG A+  + G++++ 
Sbjct: 231 RDWLDAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELP 275


>gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
 gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
          Length = 274

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 140/283 (49%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF++ +  + R      T +G +V     + ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120

Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   IP +A  F+K            +  LR         VVSMGNPH +  V DD+
Sbjct: 121 PIWEPAKIPFIANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQV-DDI 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL KH  F E  N+   ++     + LR +ERGVG T ACGS ACA+V  
Sbjct: 168 EQATVHQLGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW      ++MTG A   ++G
Sbjct: 228 GIMQGVLDANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDG 270


>gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 276

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        +++ I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF  L   + R      T RG +V +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P  +   IP  A+  +K    R       H  +     VSMGNPH +  V   +    +
Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--AVSMGNPHCVIEV-PSVADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+VV      
Sbjct: 175 ATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
 gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
          Length = 277

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 142/288 (49%), Gaps = 22/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+      + ++ I  L+       FDQ++L+   +D  +D  
Sbjct: 2   LLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV++CGNG RC  RF+       ++    ET  G L  +   D  I VDMG
Sbjct: 62  YRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDMG 121

Query: 122 EPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            P    +++P     D      ++D + + IG            VSMGNPHA+  V DD+
Sbjct: 122 VPRFAPEVVPFDAPADAPAHCLEVDGETWDIG-----------AVSMGNPHAVLRV-DDV 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A  G L+ +HP F  GVN+   +V S     LR +ERG G T ACG+ ACA+V  
Sbjct: 170 AQAPVARLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAH 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                     V V + GG L + W   +  + MTG A   +EG++ + 
Sbjct: 230 GIRRGWLESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277


>gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 369

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S +  F K +G+GN  +++D R      IT + A+     +     D ++      + +
Sbjct: 81  ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTNGT 140

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF   L +   ++SFT  T  G++V +   DG +
Sbjct: 141 -DYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199

Query: 117 SVDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            VDMGEPIL    +P     +K D   + + +I  V      N   VSMGNPH + F  +
Sbjct: 200 KVDMGEPILKASDVPTRLRENKGDAVVKAKLNIDGVTW----NVTCVSMGNPHCVTFGSN 255

Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           +     +   +LA  G     H +F    N    +V S   L +R WERG G T ACG+ 
Sbjct: 256 ENQDLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTG 315

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           ACA+VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 316 ACATVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369


>gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 279

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F KM+G+GN  +VID        + + I  ++        DQ++L    + +  D   
Sbjct: 3   VRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDM 120
            I N DGS+ + CGNG+RC+ RFL  R      R     ETI G+   +   DG ++VDM
Sbjct: 63  LIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+L+   IP    F    R R +   V    +R    VSMGNPHA+  V DD+    +
Sbjct: 123 GAPVLEPPHIP----FRAPSRAREYELEVEGQVVRL-GAVSMGNPHAVLRV-DDVDSAPV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  H  F   VN+   +V +   + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 177 ETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRLRG 236

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               AV V + GG L+I W  D  HV+MTG A+  +EG++ +
Sbjct: 237 WLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRL 278


>gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
 gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
          Length = 280

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 146/292 (50%), Gaps = 27/292 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD-ASVDA 62
           F KM+  GN  + +D       I+S    A    D  HF    D ++LI    D    D 
Sbjct: 3   FTKMQAAGNDYVYMDT--LKAPISSPEALARRISDR-HFGVGSDGLILICPPSDPGEADF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SI 116
            +R+ N DGSE + CGNG+RCV +++       ++    ET+ G+L  + +  G    ++
Sbjct: 60  RMRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETV 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEP L  K IP++   +        +       + N   VSMGNPHA+ F+   + 
Sbjct: 120 TVDMGEPRLAPKDIPVSGPGEDFINRPLRV----QGRVWNVTAVSMGNPHAVVFMHG-ID 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           + DL+  G     HP+F    N     V     L +R WERG G T ACG+ ACASVVA+
Sbjct: 175 NLDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287
                T R V +K+LGG L IEW +  NHVFMTG       G + + TG+W+
Sbjct: 235 VLTGNTERKVRMKLLGGELDIEWDEATNHVFMTG-------GAVTVFTGEWL 279


>gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 276

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 148/280 (52%), Gaps = 12/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D            I  LS  +    FDQ++++    D  +D  
Sbjct: 2   LLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  +F+  R    ++    ET RG +  +    G ++VDMG
Sbjct: 62  YRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P  + + +P  A   D +    + I   +  +L  P  VS+GNPHA+  V D L   ++
Sbjct: 122 APSFEPQDLPFTAEPCDVL----YSIMAEDTEYLITP--VSVGNPHAVIKV-DQLIDDEV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+  H  F   VN+   +V + + ++LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 AKVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V+  + GG L IEW  + + + MTG A+K +EG++
Sbjct: 235 WLSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQI 274


>gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
 gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 281

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KMEGIGN  + ID       +T + I  +S  +     D ++ I + +    D  + +
Sbjct: 6   FTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMMDM 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISVD 119
            N DGS  + CGNG+RCV +++        K+   ET  GIL     +   N+   +SVD
Sbjct: 64  YNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG+P+L    IP+    ++   D+   IG  N  F      VSMGNPH + FV DD   +
Sbjct: 124 MGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSDEF 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA   
Sbjct: 179 PVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNL 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 239 TRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945]
 gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18]
 gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140]
 gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1]
 gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945]
 gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 283

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    D   A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
 gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
          Length = 279

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 147/298 (49%), Gaps = 45/298 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56
           ++F K  G+GN  ++ID R       S ++  L+ +      + HF    D ++     +
Sbjct: 3   IEFTKYHGLGNDFILIDNR-------SSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGE 55

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENR 112
           + + D  +RI N DGSE + CGNG+RC+  FL         + S+   T+ G++  +   
Sbjct: 56  NGT-DYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLS 114

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSM 162
           DG + VDMG P L    IP              + PV    +  P            V+M
Sbjct: 115 DGLVKVDMGLPRLLAGEIPTT------------LAPVEEKVISVPLEVAGKTWEVTCVNM 162

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPH I FVED +   +L S G     HP F + +N    +V   + L +R WERG G+T
Sbjct: 163 GNPHCITFVED-VAAIELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGIT 221

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            ACG+ ACAS+VA     K +R  +V++ GG L IEW + +  V+MTG A++ + GKL
Sbjct: 222 LACGTGACASLVAGVLTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279


>gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
 gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
          Length = 281

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++F K +G+GN  +++D R     + +   AI           D ++     Q A  D 
Sbjct: 2   VLEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADY 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            +RI N DGSE + CGNG+RC+ RF+          K+++  T+ G++  +   D  + V
Sbjct: 61  TMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRV 120

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMGEPIL    IP  L  S  +       +     +       VSMGNPH I FVED + 
Sbjct: 121 DMGEPILTATDIPTTLKDSNGQAVNQPLEVAGKTWMVT----CVSMGNPHCITFVED-VA 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G     HP F + +N     V   + + +R WERG G+T ACG+ ACASVVA 
Sbjct: 176 AIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAG 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +R  +V++ GG L IEW   +NH++MTG A   ++G++ +
Sbjct: 236 VLTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281


>gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
 gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
          Length = 283

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 143/279 (51%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGN HA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNSHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 282

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 149/300 (49%), Gaps = 39/300 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDF 55
           M    ++F K  G+GN  ++ID R      IT +   A+   D  HF    D ++     
Sbjct: 1   MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPE--KAVEMCDR-HFGIGADGVIFALPG 57

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKE 110
           ++ + D  +RI N DGSE + CGNG+RC+  FL      SR K  ++   T+ G++  + 
Sbjct: 58  ENGT-DYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQL 115

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VV 160
             DG I VDMG P L    IP             +I   +   +  P            V
Sbjct: 116 TPDGQIKVDMGLPRLLAGEIPT------------NIAAADQKVINQPLEVEGKTWEVTCV 163

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           SMGNPH I FVED +    L + G     HP F +  N    +V S + L +R WERG G
Sbjct: 164 SMGNPHCITFVED-VAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAG 222

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +T ACG+ ACAS+VA+    +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 223 ITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282


>gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 274

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG I ++MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTSIQTVLC------GAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            +  V V + GG L+IEW      +FMTG+A   ++G
Sbjct: 234 LDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDG 270


>gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 279

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 15/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +V+D       +  + A+           D +M++      + D  +
Sbjct: 1   MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVV--LPSETADIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDGSISV 118
           R  N DG+E + CGNG+RC  R+L    R+K++ FT ET+ GI+  +    + +  ++ V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYH 177
           DMG P+L    IP+ R F     +R    P+           VSMGNPHA+ FV DD  H
Sbjct: 119 DMGVPVLTGDDIPV-RGFGT---ERVIAAPITVAGRTYKMTCVSMGNPHAVIFV-DDAEH 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     H +F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                +RA  +++ GG + +EW ++ H+FMTG A+  + G
Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTG 273


>gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa]
 gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 142/293 (48%), Gaps = 18/293 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VD 61
           S  + F K  G+GN  +V+D R   +            D N       +I      +  D
Sbjct: 26  SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVNGTD 85

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC  RF+        KR+SFT  T  G++V +   DG + 
Sbjct: 86  YTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQVK 145

Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
           VDMGEP+L    +P   + +K D   +    +  V      N   VSMGNPH + F    
Sbjct: 146 VDMGEPVLKAANVPTKLASNKNDAVVKSELVVDGVTW----NVTCVSMGNPHCVTFGTKG 201

Query: 173 -DDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +DL     +LA  G     H +F    N    +V S   L +R WERG G T ACG+ A
Sbjct: 202 GEDLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGA 261

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA+VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 262 CATVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314


>gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
          Length = 283

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    D   A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP      + D D    G      ++    V+MGNPHA+  V DD+    +   
Sbjct: 125 KFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRET 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLH 240
           G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L 
Sbjct: 183 GSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLD 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 243 E-GKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
          Length = 269

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 35/291 (12%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R    N    AI   +       D ++LI     A  D
Sbjct: 2   TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ ++L       +   T ET+ GI V K + +     +
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVKA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172
           ++VDMG P+    +      FD    ++F            PFV   VSMGNPH + FV 
Sbjct: 120 VTVDMGVPLETGTI-----DFD----NKF------------PFVSTQVSMGNPHLVTFV- 157

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+   DL   G  L +HP+F +  N+  A++T    + +R WERG G+T ACG+ ACA+
Sbjct: 158 DDIRSIDLPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            VA+    +T R V + M GG L I+W +  NHV+MTG A K ++G ++++
Sbjct: 218 AVAAHLTGRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELR 268


>gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 274

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 140/277 (50%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS   N   FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V K + D  ++V+MGE
Sbjct: 61  RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP    F  +  ++ +I     H  L     VSMGNPH +  V DD+    + 
Sbjct: 121 PIFEPSKIP----FKAVKAEKTYIMRAAEHTILCG--AVSMGNPHCVLQV-DDVETALVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 TIGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V + GG L I W   +N +FMTG A   ++G
Sbjct: 234 LDENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDG 270


>gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
 gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
          Length = 276

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 144/281 (51%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D       ++ + I  ++   + HF    DQ++L+   Q    D  
Sbjct: 5   FTKMHGAGNDFVVLDGVRQSVALSPEQIRYIA---DRHFGIGCDQVLLVEKTQRDEADFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++  +   DG I+V+MG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PI D   IP      ++ +    +G  +        VVSMGNPHA+  V DD+    +A
Sbjct: 122 LPIFDPAQIPFVSDSTEVIQP-LQVGNESVQIT----VVSMGNPHAVQVV-DDVETAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F + VN+   +V   E + LR +ERG G T +CG+ ACA+VVA      
Sbjct: 176 TQGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L I W  + + V MTG A   +EG++++
Sbjct: 236 LDNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276


>gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 274

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 16/280 (5%)

Query: 6   VDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +V+D        + N++  A            D ++L+   + A  D
Sbjct: 1   MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVD 119
             +RIIN DGSE + CGN +RCV R+   +    +K    ET+ GI+  +   +  + VD
Sbjct: 59  FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHY 178
           MG PIL  + IP+A     ++ +  +I P+  L  +  F  VSMGNPHA+ FV D L   
Sbjct: 119 MGRPILKPQEIPVA-----VEEEPVNI-PLEVLGQKFYFTAVSMGNPHAVIFV-DSLAKI 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L  +G L+  HP+F    N+    + S   + +  WERG G T ACG+ A A VVA   
Sbjct: 172 ELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRI 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           L      V V + GG L I W     V+MTG A+  ++G+
Sbjct: 232 LGHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGE 271


>gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 281

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 148/283 (52%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KMEGIGN  + ID       +T + I  +S  +     D ++ I + +    D  + +
Sbjct: 6   FTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMMDM 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISVD 119
            N DGS  + CGNG+RCV +++        K+   ET  GIL     +   N+   +SVD
Sbjct: 64  YNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG+P+L    IP+    ++   D+   IG  N  F      VSMGNPH + FV DD   +
Sbjct: 124 MGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSDEF 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA   
Sbjct: 179 PVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGNL 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 239 TGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
 gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
          Length = 284

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+ G+GN  ++++    +G  D+ ++ A            D ++L++D      D  +
Sbjct: 3   FTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYD--SGVADVRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118
           +I+N DGSE + CGN +RCV ++L     +K+     ET+ GI+V +    E    ++ V
Sbjct: 61  KIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAVRV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP ++   IP+     ++  +   +    +L       VSMGNPH I FV  DL   
Sbjct: 121 DMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYLVT----AVSMGNPHCIIFV-PDLEDI 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  HP F +  N+   +V     + +  WERG G T ACG+ ACA  VA   
Sbjct: 176 SLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAGVL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              T R V+V + GG L+IEW +N  ++MTG A + + G+  +
Sbjct: 236 NGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTV 278


>gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
 gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
          Length = 274

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 142/279 (50%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I   +       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V         VVSMGNPH +  VE+ +   ++ 
Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTDIQTVLC------GVVSMGNPHCVLQVEN-IQTANVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +  V V + GG L IEW    + ++MTG+A+  ++G +
Sbjct: 234 LDSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDGAV 272


>gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
 gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
          Length = 328

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 148/298 (49%), Gaps = 20/298 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
             ++ F KM G+GN  +V+D       +  + I  L+       FDQ++++       VD
Sbjct: 33  GGVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVD 92

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+  +    +K    +T  GI+  +  +DG + VD
Sbjct: 93  FRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVD 152

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVEDDL 175
           MG P L+   +P +        D F   PV +L +        VVSMGNPH +    DD+
Sbjct: 153 MGVPRLEPATVPFSA-------DEF--APVYNLDVNGQNIELSVVSMGNPHGVILT-DDV 202

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A+ G LL KH  F    N+   ++     + LR +ERG G T ACG+ ACA+VVA
Sbjct: 203 DSAPVATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVA 262

Query: 236 SGCLHK-TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            GCL    +  V V++ GG L+IEW      V M G     +EG+L +     +++ +
Sbjct: 263 -GCLRGLLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPAEPGMRRRK 319


>gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 18/281 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID RG  D +  S A            D ++L+ D + A  D  +RI
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SISVD 119
           IN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +   N  G    + V+
Sbjct: 61  INSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNPHAIFFVEDDLYH 177
           MG+P    K IP+     + D +   I     +  +   + S  MG PH + FV DD+  
Sbjct: 121 MGKPSFKRKDIPM-----QGDPESDAINTSIEVDGKEYKITSLLMGVPHTVLFV-DDVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW D+  VFMTG A++ + G+
Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGE 275


>gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
 gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
          Length = 282

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 146/287 (50%), Gaps = 18/287 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++ + F KM G+GN  +V D      ++T + I  ++        DQ++++   Q    D
Sbjct: 6   TTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQHPEND 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV++CGNG RC  +F+  +    + +   ET+ G+L    +R G ++VD
Sbjct: 66  FRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQGDVTVD 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175
           MG P+L    IP       ++ D         L L +  +    +SMGNPHA+  V D++
Sbjct: 126 MGVPVLTPAEIPFNADSQAVNYD---------LALADQTISISAISMGNPHAVTLV-DNV 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G L+  H  F   VN     V S ES+ LR +ERGVG T ACG+ ACA+VVA
Sbjct: 176 DTAPIEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                  +  V+  + GG L IEW    H V MTG A   ++G++ I
Sbjct: 236 GHLQGLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282


>gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 274

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270


>gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 407

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 147/293 (50%), Gaps = 21/293 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           S  +DF K +G+GN  ++ID R       S    A   D N     D ++      DAS 
Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           D  +R+ N DGSE + CGNG+RC+ RF++    M  K +   T+ G++  +   DG ++V
Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235

Query: 119 DMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---- 171
           DMG PI +   +P  LA + D K+ R    +      +L N   VSMGNPH I F     
Sbjct: 236 DMGMPIFEPSEVPTTLAATQDGKVVRAEMDVD--GEKWLVN--AVSMGNPHCITFGRAGG 291

Query: 172 EDD-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           E D     L  + L+  G     HP F    N    +V +   + +  WERG G T ACG
Sbjct: 292 EADGPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACG 351

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
           + ACA+VVA     + +R  +V++ GG L IEW +++  + MTG A+  + GK
Sbjct: 352 TGACATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGK 404


>gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
 gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
          Length = 279

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPD 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    ++     T +G ++     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170
           V+MGEPI +   +P  A  F+K            +  LR         VVSMGNPH +  
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED +    +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC
Sbjct: 169 VED-IKTAPVNELGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +V         +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GAVAVGIMQGLLDSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDG 275


>gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
 gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
          Length = 274

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 142/277 (51%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  D + +P   +  K ++          +      VVSMGNPH +  V DD+   ++A
Sbjct: 120 EPNFDPQSVPFRAT--KAEKTYIFRAAEQTVLCG---VVSMGNPHCVLQV-DDVAVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S +++ LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V+V++ GG LLI W    H ++MTG A   ++G
Sbjct: 234 LDEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDG 270


>gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 279

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T  S   ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170
           V+MGEPI +   +P  A  F+K            +  LR         VVSMGNPH +  
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED +    +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC
Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +V         +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275


>gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus]
          Length = 285

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 28/290 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           + +V F+K +G+GN  +++D R   + + +   +A   D       D ++      D  +
Sbjct: 4   TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118
           D  +RIIN DGSE + CGNG+RC+ RFL      K+  +   T+ G ++     DG ++V
Sbjct: 63  DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNPHAI 168
           DMG P L+   +P     +            + + L+ P            VSMGNPHA+
Sbjct: 123 DMGPPELNGPKVPSTLPTND-----------DGVVLKEPIKVDGKDWEVTCVSMGNPHAV 171

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            FV D +   DL + G     HP F   +N    +V +   + +  WERG G+T ACG+ 
Sbjct: 172 VFVPD-VDALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTG 230

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277
           ACA VVAS      +R  +V + GG L IEW +++  V+MTG A+  ++G
Sbjct: 231 ACALVVASVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280


>gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
 gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 140/277 (50%), Gaps = 7/277 (2%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V++ +    D + +             FDQ +++      +VD   RI
Sbjct: 6   FTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+MG+P 
Sbjct: 66  FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP   +  + +    HI  V  L       V+MGNPHA+  V DD+    +  +G
Sbjct: 126 FMPSEIPFVPAHGENEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DDVETAPVEHWG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242
            ++  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     L K 
Sbjct: 184 GVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKA 243

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 244 GAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280


>gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
 gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
          Length = 368

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 14/286 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R     ++ITS   + +    +  F    D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQGQ 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RFL      +  +S+  ET  G ++ +  +DG 
Sbjct: 61  G-DLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  + +P   S D+    R  +         +   V MGNPH +  V DDL
Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEV--TREGLTLSLAAVGMGNPHVVVPV-DDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G  L   P+F    N+   +V S + L++R WERG G T ACG+ ACA++VA
Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
           +  L  ++   +V + GG L I W D    VFMTG A   ++G ++
Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMN 282


>gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
 gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
          Length = 277

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  + +D          + I+   +D +       L+        D  +R+ 
Sbjct: 3   FTKMHGLGNDYIYVDAISQKIE-NPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMF 61

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121
           N DGSE + CGN +RCV +F+  +    + + + ET+ GI V +   +      + VDMG
Sbjct: 62  NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKVDMG 121

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EPIL  + IP L+     +D +   I   ++ +  N   VSMGNPHAI ++E+ +  + L
Sbjct: 122 EPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VEEFPL 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L   H  F +  N+    +    ++ +R WERG G T ACG+ ACA + AS    
Sbjct: 176 EKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVLKG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              R  +VK+LGG L+IEW++ +NH++MTG A   +EG++DI
Sbjct: 236 YVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277


>gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
 gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
          Length = 281

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID       ++ D +  ++        DQ++L+   +  S D   RI
Sbjct: 5   FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  +        S   ET+ G +  +      + VDMG 
Sbjct: 65  YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   +P      + D +  H        L +   VSMGNPHA+ +V D++    +A 
Sbjct: 125 PRFDPSALPF-----EADAEAAHYALDTAGQLLDIGAVSMGNPHAVLWV-DEIQEAPVAE 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN   A+  S   + LR +ERG G T ACG+ ACA+V       K 
Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           +R V+V + GG L I W D++  + MTG+A   +EG +D+ +
Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280


>gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579]
 gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579]
          Length = 288

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L  S     R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGESETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
 gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
          Length = 286

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 150/287 (52%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F K +G GN  +V D RG   + N  ++ I  +    N  F    D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115
               I I N DGSE Q CGNG+RC+V +L    +  +K K +  ET  G+ +AK   D  
Sbjct: 64  YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIND-K 121

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I+V MG PIL+ + IP  + +  + +    F    +   F    + V MGNPH IFFV+D
Sbjct: 122 ITVKMGVPILESQNIPTTIEKKINSIPSHEF----IEKNFKYIGYAVGMGNPHLIFFVQD 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +   +L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  
Sbjct: 178 -IESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIH 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+  L   N    V + GG L I+W  D+  V MTG AK+ + G +
Sbjct: 237 VAAYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283


>gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
 gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
          Length = 280

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 149/290 (51%), Gaps = 22/290 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           ++ + F KM+G GN  + ++      +   D I A       H     D ++LI   + A
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTL---SSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
             D  +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +    +
Sbjct: 59  --DFSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGV 116

Query: 117 ----SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
               +VDMG P+L      +A     M  +     P +    +  FV  MGNPH + FV 
Sbjct: 117 VKDVTVDMGTPLLS-NPGQIATKTGGMLAETI---PADGKEYKGTFVC-MGNPHVVIFV- 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+   DL + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+
Sbjct: 171 DDIKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACAT 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            VA+   HK  R   V+M GG L I W++ + HV+MTG A K +EG++++
Sbjct: 231 AVAAVLNHKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIEM 280


>gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
 gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
          Length = 308

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 22  SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 81

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 82  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 139

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 140 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 194

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 195 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 254

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 255 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305


>gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
 gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
          Length = 302

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 142/289 (49%), Gaps = 16/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       + +     L+   + HF    DQI+ +       +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLA---DRHFGVGADQILSVRPSPAPGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG+EV+ CGNG RC  RF+  R   ++ S   +T+ G++  +   DG ++VD
Sbjct: 60  FEYVIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVD 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIG----PVN-HLFLRNPFVVSMGNPHAIFFVED 173
           MG PI D   +P  A     +D+   H      PV+      N  V+SMGNPHA+  V D
Sbjct: 120 MGAPIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIVAD 179

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    +   G  + +H  F   VN    +V + + + LR WERG G T ACG+ ACA+V
Sbjct: 180 -VDAAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAV 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA   L      V V   GG L IEW +   V MTG A   + G++D+ 
Sbjct: 239 VAGIRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVP 287


>gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
 gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
          Length = 276

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+KM G+GN  +V+D      +++ + +  L+   + HF    DQI+L+       +D  
Sbjct: 5   FSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLA---DRHFGVGCDQILLVEKASQPGIDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+       ++    ET+RGI+  +   DG+++VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + +P    F   D    H+  V    L    VVSMGNPHA+  V D +    + 
Sbjct: 122 IP----RFLPAEIPFLAEDDVIIHLLDVADETLETS-VVSMGNPHAVQVV-DSVDTAPVG 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+ KHP F   VN    ++    ++ LR +ERG G T ACG+ ACA+VVA      
Sbjct: 176 EHGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRGL 235

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L I W  D   V MTG A   + G++++
Sbjct: 236 LDSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276


>gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 274

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T  S   ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270


>gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
 gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
          Length = 281

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 149/288 (51%), Gaps = 21/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K +G+GN  ++ID R   + + +  +     D   HF    D ++     Q A  D
Sbjct: 3   IPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDR--HFGIGADGVIFALPGQ-AETD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI 116
             +RI N DGSE + CGNG+RC+ +F+ +R++      +++   T+ G ++ +   +  +
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAQFI-ARLEANNAIGRTYRIHTLAGTIIPRLEANEQV 118

Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +VDMG P L    IP  L +  +K+      +   + L       VSMGNPH + FV  D
Sbjct: 119 TVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVT----CVSMGNPHCVTFV-GD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    L + G     HP+F +  N+    V + + + +R WERG G+T ACG+ ACA VV
Sbjct: 174 LASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           A+    K +R  +V++ GG L I W   +N V+MTG AK  +EG   I
Sbjct: 234 AALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281


>gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
 gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
          Length = 394

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 146/313 (46%), Gaps = 29/313 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNT---HFDQIMLIHDFQ-D 57
           M+ + K +G+GN  L++D RG  D   ++ ++A     TDD       ++I  + D +  
Sbjct: 1   MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60

Query: 58  ASVDAFI-------------RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFET 101
              D  I             RI N DGSE + CGNG+RC+ RFL      +  + +  ET
Sbjct: 61  IGADGLIVAAPPREGGELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVET 120

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
           + G +V +   DGS+ VDMG+P L  + +P           +  +      F        
Sbjct: 121 LAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESFQVG--AAG 178

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  V D L   DL  FG  L  HP F    N+   +V +   L +R WERG G 
Sbjct: 179 MGNPHVVIPVPD-LEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAGP 237

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           T ACG+ ACA++V    L    R+  + + GG L I W   ++HV+MTG A+  ++    
Sbjct: 238 TLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAV-- 295

Query: 281 IKTGKWIKKNEDD 293
           I    W  +  DD
Sbjct: 296 IAPSLWDPEGVDD 308


>gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 293

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 21/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTH----FDQIMLIHDFQDAS 59
           M+ F KM G+GN  +++D R     I +D ++ A S   +       DQ+++I    +A 
Sbjct: 1   MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS---I 116
            D F++I+N DGS   +CGNG RCV  ++   +       ET   +L A+ +R G    I
Sbjct: 60  -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG   LDW+ +PLA++ D +  D     P   +        SMGNPHA+ FV DD+ 
Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAPALAV------CQSMGNPHAVMFV-DDVA 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G  L    +F +  N+SI +        +R WER VG+T ACGS ACA  VA+
Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
                  R   + M GG ++IEW DN      V MTG       G LD
Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279


>gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 276

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 142/278 (51%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + D +  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP     ++ ++          +F       SMGNPH +  V DD+   D+ +
Sbjct: 123 PIFDPAKIPFRA--NQAEKTYILRAGDQTVFCG---AASMGNPHCVTVV-DDVLTADVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN+   +V S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           +  V+V + GG L I W+ N +++FMTG     ++G++
Sbjct: 237 DEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274


>gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 307

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 20  FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERATRPDVDFR 76

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 77  YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 136

Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +   +P            RD  H   VN    R  ++  VSMGNPHA+  V DD  
Sbjct: 137 APVFEAARLPFVPDGLPTRVEGRDAQHALQVND---RTAWLSTVSMGNPHAVQVV-DDAE 192

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GGGL I W  +   V MTG A   +EG LD+
Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 298


>gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 307

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 20  FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 76

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 77  YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 136

Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +   +P            RD  H   VN    R  ++  VSMGNPHA+  V DD  
Sbjct: 137 APVFEAARLPFVPDGLPTRVEGRDAQHALQVND---RTAWLSTVSMGNPHAVQVV-DDTE 192

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GGGL I W  +   V MTG A   +EG LD+
Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 298


>gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
 gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055]
 gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B]
 gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum]
 gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94]
 gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
          Length = 288

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
 gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
          Length = 274

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  D + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++
Sbjct: 120 EPNFDPQTVP----FRATKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V       
Sbjct: 173 ALLGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQE 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                V V++ GG L I W    H ++MTG A   ++G
Sbjct: 233 LLAEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
 gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
          Length = 292

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 141/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +       +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VD
Sbjct: 60  FEYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNP------FVVSMGNPHAIF 169
           MG P+LD   +P    FD         G V    L    + P        VSMGNPHA+ 
Sbjct: 120 MGRPVLDPARLP----FDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQ 175

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            V DD+    +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ A
Sbjct: 176 LV-DDVDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGA 234

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           CA+VVA   L   +  V V   GG L I W     + VFMTG A   +EG++DI 
Sbjct: 235 CAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289


>gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
 gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
          Length = 287

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 21/287 (7%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           Q   ++F K +G GN  +V+D     D    D         + HF    D +M++     
Sbjct: 5   QGKTMEFTKWQGCGNDFVVVDFL---DREPVDFAALAVRMCDRHFGIGADGLMVV--LPS 59

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----EN 111
            + D  +R  N DG+E + CGNG+RC  R+L    R++++ FT ET+ GI+  +    + 
Sbjct: 60  ETADIRMREFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDG 119

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
           +  ++ VDMG P+L    IP+ R F     +R    P+           VSMGNPHA+ F
Sbjct: 120 KVTAVEVDMGVPVLTGDDIPV-RGFGT---ERVIAVPITVAGEEYKMTCVSMGNPHAVIF 175

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD  H+ LA  G     H +F   +N     V       +R WERG G+T ACG+  C
Sbjct: 176 V-DDAEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTC 234

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           A++ A       +RA  +++ GG + +EW ++ H+FMTG A+  + G
Sbjct: 235 ATLTAGVLTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTG 281


>gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
 gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
          Length = 288

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
 gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
          Length = 277

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  ++ID       IT +    L+   + HF    DQ++++        D  
Sbjct: 5   FTKMHGLGNDFVMIDAISQRVTITPERARQLA---DRHFGVGCDQVLVVETPDSPDADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC   F+  R    +   T ET  G +V     D  ++VDMG
Sbjct: 62  YRIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL    IPLA       +   +  P           VSMGNPHA++ V +D     + 
Sbjct: 122 APILSPADIPLAAP----QQATSYTLPTQGAGDITIGAVSMGNPHAVYCV-NDCKTAPVE 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F + VN    +V S   ++LR +ERG G T ACG+ ACA+VVA      
Sbjct: 177 TLGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V + GG L I W   ++ V MTG A   + G++ I
Sbjct: 237 LENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277


>gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 279

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170
           V+MGEPI +   +P  A  F+K            +  LR         VVSMGNPH +  
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED +    +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC
Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +V         +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275


>gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
 gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
          Length = 282

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 145/285 (50%), Gaps = 30/285 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM G+GN  + I++   H   + +   A+     +     D ++LI      ++  
Sbjct: 1   MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTSCAIK- 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGS 115
            +RI N DGSE ++CGNG+RCV ++      +  K+F+ ET+ G + A     +E R G+
Sbjct: 60  -MRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIF 169
           ++++MG+P L  + IP+    DK         PV    L           VSMGNPHA+ 
Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDK---------PVVGEKLEANGETVQVTAVSMGNPHAVM 169

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVE  +    + S G ++ KH  F + VN     V S   L  R WERG G+T ACG+ A
Sbjct: 170 FVEQ-IEKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGA 228

Query: 230 CASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           CA+VVAS      K    V+V +LGG L I W +N  V M G A+
Sbjct: 229 CAAVVASVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAE 273


>gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
 gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
          Length = 292

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 62  YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMG 121

Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +   +P            RD  H   VN    R  ++  VSMGNPHA+  V DD  
Sbjct: 122 APVFEAARLPFVPDGLPTRVEGRDAQHALQVNG---RTAWLSTVSMGNPHAVQVV-DDTE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GGGL I W  +   V MTG A   +EG LD+
Sbjct: 238 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDL 283


>gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
 gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
          Length = 275

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 151/284 (53%), Gaps = 16/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+
Sbjct: 59  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVN 118

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG PILD   IP  A+ F+K     + +      FL     VSMGNPH +  V DD+   
Sbjct: 119 MGVPILDPAQIPFKAKKFEKT----YLLQSAQQTFLCG--AVSMGNPHVVLEV-DDITQA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A  G  L +H  F +GVN+   +V + + + LR +ERG   T ACGS ACA+ V    
Sbjct: 172 PVADVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQL 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             K    V V + GG L I W  +   ++MTG A++ ++G++ +
Sbjct: 232 QGKLGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275


>gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
 gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
          Length = 288

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/288 (36%), Positives = 146/288 (50%), Gaps = 23/288 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           F KM G GN  +V+D  G H  I  T     AL++    HF    DQI+++       VD
Sbjct: 5   FTKMHGAGNDFVVLD--GIHQQIDLTPAQWRALAS---RHFGVGADQILIVEKPTRPDVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VD
Sbjct: 60  FRYRIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVD 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDR--DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDD 174
           MG P L+   +P  A+         D  +   VN    R  ++  VSMGNPHA+  V DD
Sbjct: 120 MGAPELEPARVPFRAQGLPTHAEGADALYGLEVNG---RTEWISAVSMGNPHAVQVV-DD 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + ++ +   G ++  HP F   VN    +V    ++ LR +ERG G T ACG+ ACA+VV
Sbjct: 176 VENFPVLQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVV 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           A       +  V V   GG L I W      V MTG A   +EG +D+
Sbjct: 236 AGIRRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDL 283


>gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 278

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 30/287 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID RG  D +  S A            D ++L+ D + A  D  +RI
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SISVD 119
           IN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +   N  G    + V+
Sbjct: 61  INSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKVN 120

Query: 120 MGEPILDWKLIPLARSFD--------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           MG+P    K IP+    D        ++D   + I  +            MG PH + FV
Sbjct: 121 MGKPSFKRKDIPMQGEPDSDAINTSIEVDGKEYKITSL-----------LMGVPHTVLFV 169

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+   D+ + G  + +H +F    N++  +V    ++ +RTWERG G T ACG+ +CA
Sbjct: 170 -DDVEKVDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCA 228

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           SV+AS     T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 229 SVIASNLNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGE 275


>gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
 gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
          Length = 290

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 140/283 (49%), Gaps = 22/283 (7%)

Query: 8   FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +++ D      N    A+   + +     D + L+   + A+    +RI
Sbjct: 3   FTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAAFR--VRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----------LVAKENRDGSI 116
            N DGSE + CGN +RC  ++L      K  T ET+  +          L   +    S+
Sbjct: 61  FNPDGSEAELCGNLLRCAGKYLYE----KGHTGETVIPVEMYDKIKVLRLAVTDGVVQSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+  L+P+A    +   +   +      F+     VSMGNPH + FV D+  
Sbjct: 117 EVDMGEPILESDLVPVAGKRRQAVNE--EVTASGEKFVMT--AVSMGNPHCVIFV-DETA 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L ++G  L  HP F +  N+    V S +    R WERG G T ACGS ACA +VA 
Sbjct: 172 AVPLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAG 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               K NR  ++ + GG L IEW D+NHV+MTG A + + G+L
Sbjct: 232 VLSDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGEL 274


>gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 279

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 24/288 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170
           V+MGEPI +   +P  A  F+K            +  LR         VVSMGNPH +  
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED +    +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC
Sbjct: 169 VED-INLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +V         +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275


>gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
 gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
          Length = 280

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 21/278 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           V F KM G+GN  ++ID R     + +     +    + HF    DQ+++I   + A V+
Sbjct: 11  VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIG---DRHFGVGYDQLVVITKSKKADVE 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RCV + +      +  T +T  G+LVA++ ++  ISV+MG
Sbjct: 68  --VVFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMG 125

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P LDW +IPL    D ++       P+      +P  V +GNPH +F V DD+   DL 
Sbjct: 126 HPQLDWDVIPLKEKVDLIEL------PIEG----SPGAVGIGNPHCVFVV-DDVNSVDLI 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S+G+ +  H +F +  N+   ++   +++  RT+ERG G T ACGS ACA  V +     
Sbjct: 175 SWGSKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T R VSV + GG L I W  +  ++MTG     ++G L
Sbjct: 235 TERNVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVL 271


>gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As]
          Length = 287

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           V F KM G GN  +V+D       +++  +  L+   + HF    DQI+L+       VD
Sbjct: 3   VAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLA---DRHFGVGADQILLVEAAPSPEVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VD
Sbjct: 60  FGYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVD 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177
           MG P+ D   +P  A        D +   P++ +       V+SMGNPHA+  V DD+  
Sbjct: 120 MGAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRV-DDVDT 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA G
Sbjct: 179 APVLSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVA-G 237

Query: 238 CLHK-TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
             H     AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 238 LRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284


>gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
 gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
          Length = 282

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 149/286 (52%), Gaps = 23/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++   C +    +         + HF    D +++I+  + A  D  
Sbjct: 3   FTKMQGLGNDYVYVN---CFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  ++ +   + 
Sbjct: 58  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P L   LIP+    +K+  +   + G V H+       VSMGNPH + +V DD+ 
Sbjct: 118 VDMGKPELKSDLIPIISENEKVIDEPIEVDGQVYHMTG-----VSMGNPHTVIYV-DDVK 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           + DL   G     H  F + +N          ++++R WERG G T ACG+ ACA  VAS
Sbjct: 172 NLDLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVAS 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              + T+  V+VK+LGG L IEW    NHVFMTG AK  ++G +DI
Sbjct: 232 ILNNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277


>gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601]
 gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601]
          Length = 292

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 141/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +       +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VD
Sbjct: 60  FEYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNP------FVVSMGNPHAIF 169
           MG P+LD   +P    FD         G V    L    + P        VSMGNPHA+ 
Sbjct: 120 MGRPVLDPARLP----FDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQ 175

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            V DD+    +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ A
Sbjct: 176 LV-DDVDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGA 234

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           CA+VVA   L   +  V V   GG L I W     + VFMTG A   +EG++DI 
Sbjct: 235 CAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289


>gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
 gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
          Length = 274

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  D + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++A
Sbjct: 121 PNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803]
 gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803]
          Length = 288

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L  + IP L        R+ F     NH +      VSMGNPHA+ FVED
Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED 175

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 176 -VEEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 275

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 152/280 (54%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  ++ D I+ L+  +    FDQ+++I    D  +D   
Sbjct: 3   IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +   +++     T +G +  K   DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PIL+   +P    F+    ++ +I  V +H  L    VVS+GNPH +  V DD+ +  + 
Sbjct: 123 PILEPAKVP----FEAQKEEKTYILRVEDHTVLCG--VVSIGNPHCVVLV-DDIDNAPVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F   VN+    + S +   LR WERGVG T ACG+ ACA+ V      K
Sbjct: 176 TLGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            N   ++++ GG L + W     V MTG A   ++G++ I
Sbjct: 236 LNPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275


>gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 334

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 146/301 (48%), Gaps = 25/301 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59
           +++  V F+K  G+GN  ++ID R   +   +   +A+    N       +I   Q  S 
Sbjct: 39  LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98

Query: 60  ------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109
                  D  +RI N DGSE + CGNG+RC+ +FL    + KS    +   T+ G +V  
Sbjct: 99  SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGN 164
            N DG+I+VDMGEP L+   +P       ++ +  H   V      N        V MGN
Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTT-----LEANAEHDSVVEQTLEANGKTWKCTAVGMGN 213

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHAIFFV D     D    G  L  H  F    N+   +V   + L ++ WERG G T A
Sbjct: 214 PHAIFFVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLA 273

Query: 225 CGSAACASVVA---SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           CG+ ACA  VA   +G + + ++ V V + GG L IEW + +N ++MTG A   + G+  
Sbjct: 274 CGTGACALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETK 333

Query: 281 I 281
           +
Sbjct: 334 V 334


>gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 282

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 141/287 (49%), Gaps = 21/287 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  +VID  G +           +  D      FDQ++L+       VD 
Sbjct: 4   LKFTKMHGLGNDFMVID--GINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSELVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV  CGNG RC VRF+T +    +K    ET  G++V +   +G ++V+M
Sbjct: 62  RYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN----PF-VVSMGNPHAIFFVEDDL 175
           G+P      IP      + D D      + H+ L      P   V+MGNPHA+  VED  
Sbjct: 122 GQPRFMPSEIPFVPDSGE-DSDA-----LTHIILVGLESVPVSCVNMGNPHAVIIVEDT- 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G  +  H  F E VN+   ++ +   + LR +ERG G T ACG+ ACA+VVA
Sbjct: 175 ETAPVGQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVA 234

Query: 236 SGCLHKTNRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              L   +   SVK++  GG L I W     V MTG A+  +EG+L 
Sbjct: 235 GVRLGLLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGELQ 281


>gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
 gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
          Length = 275

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +VID    H ++T + I  +S       FDQ++LI    +A+ D  
Sbjct: 1   MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +    +     +T  G L+ + + D  I+V+MG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180
            P      IPL       +  RF+   VN       F  VSMGNPHA+  V D +    +
Sbjct: 121 IPRHAPAEIPLLAE----EESRFYTVLVNET--EKAFGAVSMGNPHAVIQVTD-VKTAPV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  L  H  F E VN+   +V   + + LR +ERG   T ACGS ACA+VV     +
Sbjct: 174 AELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHN 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  VSV + GG L I W      V MTG A   +EG++ +
Sbjct: 234 LLDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275


>gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20]
 gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 274

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270


>gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
 gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
          Length = 290

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  +V+D      ++ +D I  L+       FDQ++L+       VD   
Sbjct: 15  LSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDFRY 74

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VR++   S   ++    +T RGI++ +   +G ++V+MGE
Sbjct: 75  RIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNMGE 134

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     + M     ++  V    L    V SMGNPHA+  VE D+    +  
Sbjct: 135 PRFEPAEVPFIADREAMT----YLLQVADQALEIS-VASMGNPHAVTVVE-DVDTAPVER 188

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V +       
Sbjct: 189 LGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRGLL 248

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
              V V   GG L+I W      V+MTG A+  +EG +DI+ 
Sbjct: 249 QSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIEV 290


>gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
          Length = 274

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 270


>gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820]
 gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820]
          Length = 288

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 285


>gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINIGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR]
 gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR]
          Length = 277

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 11/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  ++I+    ++      +     +  T      L+      + D  +R
Sbjct: 1   MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETADIQMR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGS--ISVD 119
           I N DGSE + CGN +RC  R+L     +K+++   ET+ GI + +  EN  G   + VD
Sbjct: 61  IFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVEVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEP L+   IP+     K+  +     PVN     N   VSMGNPH + FV D+   Y 
Sbjct: 121 MGEPELERGRIPMLGGPGKVVAEPL---PVNG-STYNVTCVSMGNPHCVIFV-DNAEDYP 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A+ G  +  H  F    N+   +V +   + +R WERG G+T ACG+ ACAS VA+   
Sbjct: 176 VAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAHLN 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             T R V V + GG L I W  +NHV+M G A   ++G
Sbjct: 236 GFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKG 273


>gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
 gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
          Length = 282

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 147/283 (51%), Gaps = 23/283 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +D  G   ++      A+   D  HF    D ++LI        DA 
Sbjct: 3   FIKMHGAGNDYVYVD--GFQQDVHRPEELAVRISDR-HFGVGSDGLILI--LPSDCADAR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGIL---VAKENRDGSIS- 117
           +R+ N DGSE Q CGNG+RCV ++L  +   +    T ET+ G+L   V  +  + +IS 
Sbjct: 58  MRMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQ 117

Query: 118 --VDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             V+MG+P L    IP+  +  + D+     I   N  F  +   VSMGNPH + +V DD
Sbjct: 118 VTVNMGQPRLQRGQIPM--TGPQQDQALEVEIRVKNRTFTAS--CVSMGNPHCVVYV-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +  +D+A +G LL  HP+F E +N+    + S   +  RTWERG G T ACG+ A A  V
Sbjct: 173 VEQFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           A     +T R +   + GG L +E+ D+  V MTG A++ + G
Sbjct: 233 AGFLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275


>gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
 gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
          Length = 288

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVDQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
 gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
          Length = 280

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V F KM G+GN  +V+D+      +T   +  L   +    FDQ++++    +  +D  
Sbjct: 2   LVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKS-FTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC  +F+   R+  KS    +T  G +  K + D  + V+MG
Sbjct: 62  YRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180
            PIL    +P  ++  K       + P++    +     +SMGNPH +  V D   +  +
Sbjct: 122 APILAPVDVPF-QADQKATTYAIDV-PLSQGDQQVELSAISMGNPHGVLIV-DSTENAPV 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L  H  F    N+   +V S   ++LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 179 ETLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRG 238

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V+V + GG L IEWH +   V MTG A   +EG++
Sbjct: 239 VLDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQI 278


>gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
 gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
          Length = 274

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 144/289 (49%), Gaps = 32/289 (11%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M     N    AI   +       D ++LI   + A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---------LVAKENRD 113
           RI N DGSE   CGN  RC+ +++  +    +K+ T ET+ GI         L       
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRKLSGPHEEV 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++VDMG P++    + +         D F+ G           V+SMGNPH + FVED
Sbjct: 123 TEVTVDMGCPVIGETALEIEAG------DYFYTG----------TVISMGNPHLVIFVED 166

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            + + +L   G LL  HP+F    N+   +  S + + ++ WERG G+T ACG+ ACA+ 
Sbjct: 167 -ITNINLPVIGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATA 225

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           VAS    KT R   V M GG L I W +++ HV+MTG A K +EG+L+I
Sbjct: 226 VASAVRGKTGRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274


>gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 274

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDG 270


>gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1]
 gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1]
          Length = 288

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    +  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
 gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
          Length = 279

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K +G+GN  ++ID R    +    +   +    N HF    D ++ +    D   D  
Sbjct: 3   FFKYQGLGNDFILIDNR--SSSELLLSSGQILKMCNRHFGIGADGVIFLLS-GDKVSDYG 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           + I N DGSE + CGNG+RC++ F+++        K +  +T+ GI+ A+      + V+
Sbjct: 60  MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177
           MG P+   K IP   S    D+D   I     +  +N  V  V+MGNPH I FVED    
Sbjct: 120 MGTPLFLNKQIPTTLS----DKDNTVINYPLEIEKKNWLVTCVNMGNPHCITFVEDTNL- 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G L   H  F E +N     +     L +R WERG G T ACG+ ACASVVA  
Sbjct: 175 INLEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
             ++  R  +V++ GG LLIEW  D+N V+MTG A++ + G+ +
Sbjct: 235 ITNRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278


>gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99]
 gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99]
          Length = 274

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 21/281 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D   RI 
Sbjct: 1   MHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  +DG+++V+MG P+L
Sbjct: 59  NADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +   IP    F+    ++ ++   +        FL     VSMGNPH +  VED +   D
Sbjct: 119 EPSKIP----FNAKRPEKTYLLQTDTAESKMQTFLCG--AVSMGNPHCVLDVED-IQAAD 171

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 172 VEGIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQ 231

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            K ++ V V + GG L I W  +   ++MTG A+  ++G++
Sbjct: 232 GKLDKRVRVDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQI 272


>gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 288

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FVED
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED 175

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 176 -VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 274

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 137/283 (48%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFFVEDDL 175
           PI +   +P  A  F+K            +  LR         VVSMGNPH +  VED +
Sbjct: 121 PIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQVED-I 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V  
Sbjct: 168 NLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                  +  V V + GG L IEW    H ++M G+A   ++G
Sbjct: 228 GIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDG 270


>gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
 gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
          Length = 281

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 20/288 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K+ G+GN  ++++  G  + +  D I       +  F    D ++L+ D      D  
Sbjct: 3   FTKVHGLGNDFILVNA-GMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLD--SGVADVR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           +RIIN DGSE + CGN +RCV ++L     +++     ET+ GI+V     K  R  ++ 
Sbjct: 60  MRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+ + IP+  +  ++  +   +      F      VSMGNPH + FV D L  
Sbjct: 120 VDMGAPRLERQEIPMLGTPGQVVNEPLQVN--GQTFKIT--AVSMGNPHCVIFVPD-LSV 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  +  HP F    N+   +V S   + +  WERG G T ACG+ ACA V  +G
Sbjct: 175 IPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACA-VATAG 233

Query: 238 CLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
            L+  T R+V+V + GG L IEW DN  ++MTG A++ + G+  +  G
Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281


>gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
 gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
          Length = 281

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 145/286 (50%), Gaps = 15/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  +V++       D    + I     D +       LI  F     D  
Sbjct: 1   MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKADIR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116
            RI+N DGSE + CGNG+RC+ R++  R  + ++    ET+ GI+V +   D +     +
Sbjct: 61  WRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVTGV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP L    IP+             +G      +R    +SMGNPH + +V +D+ 
Sbjct: 121 CVDMGEPRLQRHQIPMVGPEGPAVNQELVVG---DAVVRV-TALSMGNPHCLIYV-NDID 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + + G  +  HP F    N+   +V + + + +R WERG G T ACG+ ACA+VV S
Sbjct: 176 EAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVVGS 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                T+R V+V + GG L IEW  +NN V+MTG A + + G+L +
Sbjct: 236 VLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281


>gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6]
 gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6]
          Length = 277

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 15/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  + +D          + I+   +D +       L+        D  +R+ 
Sbjct: 3   FTKMHGLGNDYIYVDAISQKIE-NPNEISRFVSDRHFGIGSDGLVLILPSDLADFKMRMF 61

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121
           N DGSE + CGN +RCV +F+  +    + + T ET+ GI V +   +      + VDMG
Sbjct: 62  NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKVDMG 121

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EPIL  + IP L+     +D +   I   ++ +  N   VS+GNPHAI ++E+ +  + L
Sbjct: 122 EPILKAETIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSIGNPHAITYIEN-VEEFPL 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS    
Sbjct: 176 EKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVLKG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 236 YVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
 gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
          Length = 278

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 142/283 (50%), Gaps = 18/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F+K +G GN  +++D   C     SD  A      D +       +++       D  +R
Sbjct: 3   FSKWQGCGNDFVLVD---CFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKADFRMR 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK----ENRDGSISVD 119
           I N DGSE + CGNG+RC  R+L      +++ FT ET  GILV +      +   + VD
Sbjct: 60  IFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRVD 119

Query: 120 MGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MGEP+L+ + IP+     +++  +   +    +        VSMGNPH + FVED    +
Sbjct: 120 MGEPVLEGEKIPVTGFGMNRVIEEDIEVKGKTYKMT----CVSMGNPHCVIFVED-AEAF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     HP F    N     V   + + +R WERG  +T ACG+ +CA+ VA   
Sbjct: 175 PIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             +T+R V V++ GG L +EW +  NHVFMTG A+  + G++D
Sbjct: 235 TGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277


>gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
 gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
          Length = 286

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           S+++ F KM G+GN  +V+D  G   N+  + D I  L+  +    FDQ++L+    D  
Sbjct: 10  STLIQFTKMHGLGNDFMVVD--GVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPD 67

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++
Sbjct: 68  LDFHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVT 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P+L+   IP   +  K+++    +             VSMGNPH +    DD+  
Sbjct: 128 VNMGIPVLEPSKIPF--TAKKVEKTYLLLASSGTYLCG---AVSMGNPHCVI-EVDDVAA 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV   
Sbjct: 182 ADVDTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGI 241

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              K +R V V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 242 QQGKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284


>gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1]
 gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1]
          Length = 286

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 14/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + DG ++VDMG+
Sbjct: 63  VIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDMGQ 122

Query: 123 PILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+L+  L+P      + R      +    +G    +++     VSMGNPHA+  V DD+ 
Sbjct: 123 PVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAP---VSMGNPHAVQLV-DDVD 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           H  +A++G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 179 HAPVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                 +  V V   GG L IEW D   V MTG A+  +EG++++ 
Sbjct: 239 IRWGLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283


>gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
 gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
          Length = 275

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 19/279 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDA 58
           QS  + F KM G+GN  +VID R        DA    +  D      FDQ+ +I   ++A
Sbjct: 9   QSIPLPFMKMHGLGNDFVVIDSR--RTGALPDAATVAAIADRHRGVGFDQLAVILPGENA 66

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             DA +   N DGS   +CGN  RCV RFL      ++    T   +L A++  D    V
Sbjct: 67  --DARLVFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P+LDW  IPLA      D D  H+ PV      +P    MGNPH  FFV D     
Sbjct: 125 NMGAPVLDWAGIPLAE-----DVDTLHL-PVPG----DPVATGMGNPHMTFFVPD-AAAV 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL  FG     HP++ +  N+ + +V S + + LR WERG G+T A GS +CA+VVA+  
Sbjct: 174 DLERFGPAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAAR 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              T R V V + GG L I+W ++  V+MTG     ++G
Sbjct: 234 RGLTGRRVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDG 271


>gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 276

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + D I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G ++     D  ++V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I       LF      VSMGNPH +  V DD    D
Sbjct: 122 VPEFEPNKIP----FKAKQTEKTYILRAEEKTLFCG---AVSMGNPHVVTVV-DDTQTAD 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VDTLGPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 234 ELLDEKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQL 274


>gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
 gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
          Length = 285

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 149/293 (50%), Gaps = 30/293 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +++    + +   A  ++   D  HF    D ++ I     A  D  
Sbjct: 3   FTKMHGCGNDYVYVNL--FEEKLDDPARVSIYVSDR-HFGIGSDGLITIGPSDKA--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + 
Sbjct: 58  MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169
           VDMGEPIL    IP+ ++      D + +   P++      H+       VSMGNPHA+ 
Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV DD+  ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  
Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA+V+A     KT+  V V + GG L IE+  + NHVFMTG A + + G++DI
Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
 gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
          Length = 286

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 150/287 (52%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F K +G GN  +VID RG   + N  ++ I  +    N  F    D ++ I + ++ +
Sbjct: 4   ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115
               I I N DGSE Q CGNG+RC+V +L    +   K   +  ET  G+ +AK   D  
Sbjct: 64  YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I+V MG PIL+ + IP  + +  + +    F    +   F    + V MGNPH IFFV+D
Sbjct: 122 ITVKMGVPILECQNIPTTIEKKINSIPSHEF----IEKDFNNMGYAVGMGNPHLIFFVKD 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    L+  G +L K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  
Sbjct: 178 -IESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIH 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+  L   N    V + GG L I+W  D+  V MTG AKK + G +
Sbjct: 237 VAAYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283


>gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2
          Length = 279

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 147/295 (49%), Gaps = 39/295 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           ++F K  G+GN  ++ID R      IT +   A+   D  HF    D ++     ++ + 
Sbjct: 3   IEFTKYHGLGNDFILIDNRASKTPAITPE--KAVEMCDR-HFGIGADGVIFALPGENGT- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGS 115
           D  +RI N DGSE + CGNG+RC+  FL      SR K  ++   T+ G++  +   DG 
Sbjct: 59  DYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQLTPDGQ 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNP 165
           I VDMG P L    IP              +G  +   +  P            VSMGNP
Sbjct: 118 IKVDMGLPRLLAGEIPTT------------LGAADGKVINQPLEVEGQTWEVTCVSMGNP 165

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H I FVED +    L   G     HP F +  N    +V S + L +R WERG G+T AC
Sbjct: 166 HCITFVED-VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLAC 224

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           G+ ACAS+VA+    +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 225 GTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279


>gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
 gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
          Length = 279

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 139/279 (49%), Gaps = 17/279 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G GN  + ++   C +    + I +L+   +D +T      LI        DA +
Sbjct: 3   FTKMHGAGNDYVYVN---CFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKADAQM 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGNG+RCV +++       +++   ET  G+L       GS    + V
Sbjct: 60  RMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVRV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+PIL    IP     D        +G    L +     VSMGNPH I FV++   H+
Sbjct: 120 NMGKPILTSAEIPTLLPGDPPVNAPLEVG-AQTLEVT---CVSMGNPHCITFVDEVNDHW 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  +  HPMF   VN     V S   L +R WERG G T ACG+ ACAS VA   
Sbjct: 176 -VHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             ++ R V + + GG L +EW DN+ VFMTG A + ++G
Sbjct: 235 TGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQG 273


>gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1]
          Length = 285

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 148/293 (50%), Gaps = 30/293 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +++    + +   A  ++   D  HF    D ++ I        D  
Sbjct: 3   FTKMHGCGNDYVYVNL--FEEKLDDPARVSIYVSDR-HFGIGSDGLITIG--PSGKADFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + 
Sbjct: 58  MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169
           VDMGEPIL    IP+ ++      D + +   P++      H+       VSMGNPHA+ 
Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV DD+  ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  
Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA+V+A     KT+  V V + GG L IE+  + NHVFMTG A + + G++DI
Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331]
          Length = 280

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 142/284 (50%), Gaps = 21/284 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID    H + T      L         DQ++++   Q   VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ GI+  K   DG I+V MG P+L  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVL-- 118

Query: 128 KLIPLARSFDKMDRDRFHIG-----PVN----HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              P A  FD  + D   +G     P++     +++    VVSMGNPHA+  VED     
Sbjct: 119 --APAAVPFDASNLDSRAMGEDTLWPLDVQGKQVWIS---VVSMGNPHAVQVVEDSEAAP 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LA  G L+  HP F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA   
Sbjct: 174 VLAE-GPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIR 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               +  V+V+  GG L I W      V MTG A   +EG+++I
Sbjct: 233 RGLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEI 276


>gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
 gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
          Length = 274

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  D + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++
Sbjct: 120 EPNFDPQTVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANV 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V       
Sbjct: 173 ALLGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQE 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 233 LLSEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15]
          Length = 292

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGIATPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 62  YRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDMG 121

Query: 122 EPILDWKLIPLAR---SFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +   +P            RD  H   +N    R  ++  VSMGNPHA+  V DD  
Sbjct: 122 APVFEAARLPFVPDGLPTRVEGRDTQHALQING---RTAWLSTVSMGNPHAVQVV-DDAQ 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 178 AFPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GG L I W  +   V MTG A   +EG LD+
Sbjct: 238 IRRGLLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDL 283


>gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI]
 gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 288

 Score =  148 bits (374), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102]
 gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102]
          Length = 283

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 7/278 (2%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V++ +    D + +             FDQ +++      +VD   RI
Sbjct: 6   FTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+MG+P 
Sbjct: 66  FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP   +  + +    HI  V  L       V+MGNPHA+  V D++    +  +G
Sbjct: 126 FMPSEIPFVPAHGETEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DNVETAPVDHWG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242
           + +  H  F E VN+   ++    S+ LR +ERGVG T ACG+ ACA+VVA     L K 
Sbjct: 184 SAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKA 243

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 244 GAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281


>gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
 gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
          Length = 278

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H     + +  LS       FDQ++++    +  VD  
Sbjct: 2   LLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+       +     ET  GI+     +DG + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD 179
                 +  P    F+    +R+ +  P+N       F  VSMGNPH +  V DD++   
Sbjct: 122 AA----RFSPSDLPFNAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVV-DDIHSEL 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  L  H  F + VN    ++ +   +DLR +ERG G T ACG+ ACA+V  +   
Sbjct: 177 VNQLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKW 236

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  V V + GG L I W     V M G   + ++G+L +
Sbjct: 237 GLVDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278


>gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134]
 gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus]
 gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134]
          Length = 288

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
 gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
          Length = 274

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 150/283 (53%), Gaps = 20/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  +VI+     D  +  A+           D ++++     A  D  +RI 
Sbjct: 3   FTKMHGLGNDFIVIEAVEGVD-YSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMRIF 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMG 121
           N DGSE + CGNG RC  +++  +  + ++  T ET+ G+++ +   EN +  S+ V MG
Sbjct: 60  NADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVYMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            PI +   IP+     K ++ +F   PV      +  +   V +G PH I FV       
Sbjct: 120 SPIFESSKIPV-----KSEKQKFIDEPVKIDGKTYRLSS--VRVGVPHTILFV-SSFEES 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  + K  +F EG N+   +V   E++ +RTWERGVGLT ACGS A AS V S  
Sbjct: 172 FMKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSL 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L +T R+V+V    G LL+EW ++N ++++GE ++ + G+++I
Sbjct: 232 LGRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274


>gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
          Length = 278

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 42/293 (14%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D I+L+ D
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGA------------DGILLVLD 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110
            + A  D  +RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +   
Sbjct: 51  SKLA--DIRMRIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLIL 108

Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNP 165
           N  G    + V+MG+P    K IP+     + D +   I     +  +   + S  MG P
Sbjct: 109 NDYGLVEKVRVNMGKPSFKRKDIPM-----QGDPESDAINTSIEVEGKEYKITSLLMGVP 163

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H + FV DD+   D+ + G  + KH +F    N++  +V    ++ +RTWERG G T AC
Sbjct: 164 HTVLFV-DDVEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFAC 222

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ +CASV+AS     T + V+V +  G L IEW D+  VFMTG A++ + G+
Sbjct: 223 GTGSCASVIASNLNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGE 275


>gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
 gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
          Length = 303

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 148/290 (51%), Gaps = 24/290 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF----DQIMLIHDFQ 56
           M+ F+K +G+GN  L+ID R   D +T   IN     +    + HF    D ++L    +
Sbjct: 4   MLQFSKYQGLGNDFLLIDGR--EDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRD 113
            A  D  ++I N DGS  + CGNG+RC+ RFL      +  + +  ET+ GI+      D
Sbjct: 62  -ADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQED 120

Query: 114 GSISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFF 170
           G I VDMG P LD + IP   +     + +   H+G  + H+       V MGNPH I  
Sbjct: 121 GQICVDMGTPFLDPESIPTTLTIGSAGLPQGECHLGSTSLHVA-----AVGMGNPHLIVP 175

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED L +    ++G  L KH  F    N+   ++ S   L++R WERG G T ACG+ AC
Sbjct: 176 VED-LENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGAC 234

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           AS+VA+  L  ++    V + GG L I W      VFMTG A+  ++G L
Sbjct: 235 ASLVATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVL 284


>gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
 gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
          Length = 283

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 136/286 (47%), Gaps = 24/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V+F K +G+GN  ++ID R      +T D A+     +     D ++      +   D  
Sbjct: 3   VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALP-PEGDTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118
           +RI N DGSE + CGNG+RC+ RFL     +      ++   T+ G +      DG + V
Sbjct: 62  MRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKV 121

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVE 172
           DMG P L  + IP  L    D +      +     PV          VSMGNPH I FV 
Sbjct: 122 DMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWPVT--------CVSMGNPHCITFV- 172

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DDL   D  + G     HP+F + +N    +V   + L +  WERG G T ACG+ ACA 
Sbjct: 173 DDLEAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAV 232

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           +VA     K+    ++++ GG L I W  +   VFMTG A+K + G
Sbjct: 233 LVAGVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTG 278


>gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
 gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 150/291 (51%), Gaps = 28/291 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++   C      +         N HF    D +++I+  + A  D  
Sbjct: 9   FTKMQGLGNDYVYVN---CFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFE 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  K+ +   + 
Sbjct: 64  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVR 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFV 171
           VDMGEP LD + IP+       + DR     +       H+       VSMGNPH + ++
Sbjct: 124 VDMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMT-----GVSMGNPHDVVYI 178

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D++   D+   G     H  F + +N   ARV   +++++R WERG G T ACG+ ACA
Sbjct: 179 -DNVQGLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACA 237

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             VAS     T R V +++LGG L IEW+ ++NHV+MTG A   ++G++++
Sbjct: 238 VAVASILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288


>gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 275

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 15/272 (5%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  + ID  +   D     AI           D ++LI      S    +R+
Sbjct: 3   FTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDKCSFR--MRM 60

Query: 67  INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSISVDM 120
            N DGSE Q CGN +RCV +++      ++ + T ET+ G+    L    ++   + V+M
Sbjct: 61  FNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+PIL  K IP+    +K+  +         +       VSMGNPH + FVE  +   D+
Sbjct: 121 GKPILLAKDIPVIWEKEKLIYETIDFSSEQWILT----AVSMGNPHVVIFVEK-VSRLDV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HPMF E +N+    + SL    +R WERG G T ACG+ ACA++VAS    
Sbjct: 176 KRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVLNG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEA 271
           K NR  ++ +LGG L +EW +   HVFMTG+A
Sbjct: 236 KLNRKATISLLGGDLELEWDEKTEHVFMTGDA 267


>gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
 gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
          Length = 274

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 135/277 (48%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  D + +P    F     +R +I     H  L    VVSMGNPH +  V DD+    + 
Sbjct: 121 PNFDPQAVP----FRATKEERTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V++ GG L I W    N +FMTG A   ++G
Sbjct: 234 LSEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDG 270


>gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
 gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
          Length = 295

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      N+T   + AL+   + HF    DQ++L+     A VD
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VD
Sbjct: 60  FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVD 119

Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ D + +P A +  +        + P++     R    VSMGNPHA+  V DD+  
Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVV-DDVEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
              + +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 239 RRGRLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286


>gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169]
 gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1]
 gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1]
 gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1]
 gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7]
 gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8]
 gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72]
 gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1]
 gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E]
          Length = 299

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 23/304 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDMG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRD-RFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +P  +   IP   ++  K+ R  R  +   PV        +V ++GNPHAI    DD+  
Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPVQL------YVANIGNPHAII-KVDDVLD 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
            D+   G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV   +
Sbjct: 175 ADVDRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGI 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-----KLDIKTGKWIKK 289
             G L +    +  ++ GG L I W D   + MTG     +EG      L    G  +  
Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDP 293

Query: 290 NEDD 293
           N DD
Sbjct: 294 NADD 297


>gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264]
 gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264]
          Length = 288

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114]
 gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114]
          Length = 283

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 138/277 (49%), Gaps = 7/277 (2%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V++ +    D + +             FDQ +++      +VD   RI
Sbjct: 6   FTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+MG+P 
Sbjct: 66  FNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNMGKPR 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP   +  +      HI  V  L       V+MGNPHA+  V DD+    +  +G
Sbjct: 126 FMPSEIPFVPAHGENKDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DDVETAPVEHWG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKT 242
             +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     L K 
Sbjct: 184 GAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLLKE 243

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 244 GAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGEL 280


>gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
 gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
          Length = 288

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 23/293 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S   F KM G+GN  + ++M     R     I ++ ++ ++T      D ++LI     A
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVA 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112
            V   +R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    +++
Sbjct: 60  PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDK 117

Query: 113 DGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                +DMG P L  + IP L        R+ F     NH +      VSMGNPHA+ FV
Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+ +  L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA
Sbjct: 174 -DDVENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232

Query: 232 SVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +VVA+    K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285


>gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
 gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
          Length = 283

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 7/280 (2%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V++ +    D + +             FDQ +++      +VD   
Sbjct: 4   LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+MG+
Sbjct: 64  RIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVTVNMGK 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP   +  + +    HI  V  L       V+MGNPHA+  V D++    +  
Sbjct: 124 PRFMPSEIPFVPAHGENEDALTHIVLVG-LESVPVSCVNMGNPHAVILV-DNVETAPVEH 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLH 240
           +G  +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     L 
Sbjct: 182 WGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNGLL 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           K    V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 242 KAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281


>gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42]
 gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42]
          Length = 315

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 145/300 (48%), Gaps = 36/300 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L+   + HF    DQI+++     A +D
Sbjct: 26  IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLA---DRHFGVGADQILIVRPSPGAGID 82

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++VD
Sbjct: 83  FEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVD 142

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PF--------------VVSMGN 164
           MG P L+   +P          D   + PV+    +  P               VVSMGN
Sbjct: 143 MGRPELEPARVPF---------DTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGN 193

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+  V DD+    +A  G L+  HP F + VN    ++ +   + LR +ERG G T A
Sbjct: 194 PHAVQLV-DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLA 252

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           CG+ ACA+VVA   L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 253 CGTGACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312


>gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
 gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
          Length = 279

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  ++ID R     + +    A+   D  HF    D ++     Q+   D
Sbjct: 3   IEFTKYHGLGNDFILIDNRSSLTPVITPQ-QAVKWCDR-HFGIGADGVIFALPGQN-DTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSI 116
             +RI N DGSE + CGNG+RC+  FLT     SR K   +   T+ G++  +   DG +
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTK-DYYRIHTLAGVITPQLTHDGQV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L  + IP   +F   D    ++         +   VSMGNPH I F+ED + 
Sbjct: 119 KVDMGLPRLLAQEIP--TTFAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIED-VA 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G     HP F + +NL    + +   L +R WERG G+T ACG+ ACA +VA 
Sbjct: 176 AIPLEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAG 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               K +R  ++++ GG L IEW + +  ++MTG A++ + GK 
Sbjct: 236 VLNDKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279


>gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1]
          Length = 299

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 23/304 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDMG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRD-RFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +P  +   IP   ++  K+ R  R  +   PV        +V ++GNPHAI    DD+  
Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPVQL------YVANIGNPHAII-KVDDVLD 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
            D+   G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV   +
Sbjct: 175 ADVDRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGI 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-----KLDIKTGKWIKK 289
             G L +    +  ++ GG L I W D   + MTG     +EG      L    G  +  
Sbjct: 235 REGWLDE-GVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDP 293

Query: 290 NEDD 293
           N DD
Sbjct: 294 NADD 297


>gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
 gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
          Length = 275

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 145/279 (51%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+G+GN  +VID       ++  AI  L+  +    FDQ++L+    D  +D   
Sbjct: 3   IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  L    +++     T +G +  K  +DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP      K +   + +    H  +    VVSMGNPH +  V DD+    + +
Sbjct: 123 PIFDPHKIPFVA---KKEEKTYILRVQEHTVICG--VVSMGNPHCVVLV-DDIDSAPVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F   VN+S   + S +   LR WERGVG T ACG+ ACA+ V      K 
Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               ++++ GG L   W     V MTG A+  ++G++ I
Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275


>gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 274

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++A
Sbjct: 121 PNFEPQSVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi]
 gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi]
          Length = 262

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 17/266 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 8   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQNGC--DQVIVITNSSLA--DCFMHI 61

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E + + IL   +  D SI V+MG+P+L
Sbjct: 62  YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+      + D  H+ P+    L++P  V++GNPH +FFV D +    L S G 
Sbjct: 122 KWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S    + T +
Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270
             SV + GG LLIEW +N  VFMTG+
Sbjct: 235 QTSVNLPGGKLLIEWANN--VFMTGD 258


>gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
 gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
          Length = 278

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 42/293 (14%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D I+L+ D
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGA------------DGILLVLD 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110
            + A  D  +RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +   
Sbjct: 51  SKLA--DIRMRIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLIL 108

Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNP 165
           N  G    + V+MG+P    K IP+     + D +   I     +  +   + S  MG P
Sbjct: 109 NDYGLVEKVRVNMGKPSFKRKDIPM-----QGDPESDAINTPIEVEGKEYKITSLLMGVP 163

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H + FV DD+   D+ + G  + KH +F    N++  +V    ++ +RTWERG G T AC
Sbjct: 164 HTVLFV-DDVEKVDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFAC 222

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ +CASV+A+     T R  +V +  G L IEW D++ VFMTG A++ + G+
Sbjct: 223 GTGSCASVIAANLNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGE 275


>gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815]
 gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815]
          Length = 286

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 145/285 (50%), Gaps = 16/285 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      N+T   + AL+   N HF    DQ++++       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGYTQPLNLTETQVRALA---NRHFGVGADQLLVVEKPTVDGVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT-SRMK-RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  SR+  ++S   +  +G++      +G + VDMG
Sbjct: 62  YRIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            P+ +   +P   S  +  R   D  +   VN    R   VVSMGNPHA+  V DD+  +
Sbjct: 122 APVFEPVQVPFDASGVEARREGNDTLYALEVNGE-TRWVSVVSMGNPHAVQVV-DDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++  HP F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
               +  V V   GG L I W+    + + M G A   +EG++++
Sbjct: 240 RGLLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIEL 284


>gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894]
 gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894]
          Length = 274

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PVFEPSLVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   +V + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
              V V + GG L I W    N +FMTG A   ++G
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDG 270


>gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 263

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/266 (39%), Positives = 150/266 (56%), Gaps = 17/266 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 9   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQNGC--DQVIVITNSSLA--DCFMHI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E + + IL   +  D SI V+MG+P+L
Sbjct: 63  YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+      + D  H+ P+    L++P  V++GNPH +FFV D +    L S G 
Sbjct: 123 KWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S    + T +
Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270
             SV + GG LLIEW +N  VFMTG+
Sbjct: 236 QTSVNLPGGKLLIEWANN--VFMTGD 259


>gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
 gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
          Length = 292

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIA---DRHFGVGADQLLLVERSTRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 62  YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMG 121

Query: 122 EPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +      +P          D  H   +N    R  ++  VSMGNPHA+  V DD  
Sbjct: 122 APVFEAARLPFLPEGLPTRTQGDDTQHALQING---RTEWLSTVSMGNPHAVQIV-DDTE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GG L I W  D   V MTG A   +EG LD+
Sbjct: 238 IRRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDL 283


>gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98]
          Length = 288

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 146/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF--DQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   H      A+ A    + NT    D ++LI   + A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI-- 116
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  I  
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVT 119

Query: 117 --SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    +P L        R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LVKIDMGAPRLTRAELPMLGEGETPFIREDFLFHNQRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACASV
Sbjct: 175 DVEKAPLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +   V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYEYK 285


>gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 259

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 149/263 (56%), Gaps = 17/263 (6%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           +M G GN  ++ID R    +I +   N     +    DQI++I +   ++ D F+ I N 
Sbjct: 8   RMYGTGNNFVIIDSR----SINNLNWNYREIANQNGCDQIIVITN--SSAADCFMHIYNA 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWK 128
           DG EV+ CGN  RCV   + S    +  T E + + IL   +    SI V+MG+P+  W 
Sbjct: 62  DGGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWH 121

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL+   D +     H+ P+    L++P  V++GNPH +FFV D++    L S G  L 
Sbjct: 122 EIPLSAKCDPL-----HL-PIELEMLKDPVAVNIGNPHMVFFV-DNISEIPLQSLGPKLE 174

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNRAVS 247
           KH +F + VN++IA+V     + LR WERG G+TA+CGSAACA+++AS    +   R  S
Sbjct: 175 KHTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTS 234

Query: 248 VKMLGGGLLIEWHDNNHVFMTGE 270
           V + GG LLIEW DN  +FMTG+
Sbjct: 235 VNLPGGKLLIEWPDN--IFMTGD 255


>gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246]
          Length = 280

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 145/298 (48%), Gaps = 38/298 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G+GN  + +D         +D         + HF    D ++LI   + A  D
Sbjct: 1   MQFTKMHGLGNDYVYVDC--VRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--D 56

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGS 115
           A +R+ N DGSE + CGNG+RCV +F+  R    +     ET RG+L      +  +   
Sbjct: 57  ARMRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAER 116

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL---RNPF---VVSMGNPHAIF 169
           + V+MGEPIL+   IP                PVN   +     P+    VSMGNPHA+ 
Sbjct: 117 VRVNMGEPILESAKIPTTLPGAP---------PVNAKLVCAAPTPWEVTCVSMGNPHAVI 167

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  DD+   +L   G  L   P F   +N+   +V S   + +RTWERG G+T ACG+ A
Sbjct: 168 YC-DDVAKVELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGA 226

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
           C+  VA    H+T R +   + GG L +EW + +N V+MTG A        ++ TG+W
Sbjct: 227 CSVCVAGVLTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPAT-------EVFTGEW 277


>gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
 gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
          Length = 286

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           ++F K +G GN  +VID RG   + N  S+ I  +    N  F    D ++ I +  + +
Sbjct: 4   INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115
               I I N DGSE Q CGNG+RC+V +L    +   K   +  ET  G+ +AK   D  
Sbjct: 64  YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I+V MG PIL+ + IP  + +  + +    F    +   F    + V MGNPH IFFV+D
Sbjct: 122 ITVKMGVPILESQNIPTTIEKKINSIPSHEF----IEKNFNNMGYAVGMGNPHLIFFVKD 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    L   G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  
Sbjct: 178 -IESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIH 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+  L   N    V + GG L I+W  D+  V MTG AKK + G +
Sbjct: 237 VAAYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283


>gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
 gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
          Length = 288

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 153/293 (52%), Gaps = 23/293 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S   F KM G+GN  + ++M     R     I ++ ++ ++T      D ++LI     A
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVA 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112
            V   +R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    +++
Sbjct: 60  PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDK 117

Query: 113 DGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                +DMG P L  + IP L        R+ F     NH +      VSMGNPHA+ FV
Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA
Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232

Query: 232 SVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +VVA+    K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285


>gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 279

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 135/279 (48%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDAFI 64
           + F K  G+GN +++I  R  +  + S   +    D +       +I       + D  +
Sbjct: 3   IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPGIGNTDYTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDM 120
           RI+N DGSE Q CGNG+RC+ R +          K+++  T  G++  +   +G + VDM
Sbjct: 63  RILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP              +     L+L     VSMGNPH I FVED     DL
Sbjct: 123 GTPYLFAHEIPTTLGNPNETVINKPLAVAGKLWLVT--CVSMGNPHCITFVEDA-SAIDL 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G     H MF E +N     V   + L +R WERG G T ACG+ ACASVVA     
Sbjct: 180 AVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLTE 239

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
              R  +V++ GG L+IEW + +N ++MTG+A+  + G 
Sbjct: 240 NCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGS 278


>gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703]
          Length = 274

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+   ++A
Sbjct: 121 PNFEPQSVP----FRAAKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 234 LGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 270


>gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 288

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
 gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
          Length = 276

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 152/287 (52%), Gaps = 26/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  ++ID         SD I +LS       FDQ++++    D ++D   RI
Sbjct: 3   FSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHCRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRF-----LTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
            N DGSEV  CGNG+RCV RF     LT++  +K  + T+  +  +L ++      ISV+
Sbjct: 63  YNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSE-----FISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178
           MGEPI D   IP    F    +  + +   N   L    VVS+GNPH +  VE  DL   
Sbjct: 118 MGEPIFDPIKIPF---FSTQYQKMYVLFVPNFTILCG--VVSIGNPHCVILVEQVDL--V 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VA 235
            +   G++L  H  F +  N+S  ++ S  ++ LR +ERG G T ACGSAACA+V   + 
Sbjct: 171 PVTVLGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQ 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            G L K N +V V + GG L I W    + ++M G A   ++G +++
Sbjct: 231 QGLLKK-NISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276


>gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
 gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
          Length = 276

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM+G+GN  +V+D       +    I  L+  +    FDQ++++   Q    D  
Sbjct: 2   IMPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSE   CGNG R V +++  +    ++     T    + A    +G +++DMG
Sbjct: 62  FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L+   IPL R  +K        G +++        VSMGNPH +  V D++    + 
Sbjct: 122 KPRLEPAQIPL-RFAEKQTLYSIDAGGISYKV----GAVSMGNPHCVLKV-DNVEKAPVQ 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L++H  F    N    ++   +++ LR +ERGVG T ACG+ ACA+VV +     
Sbjct: 176 TVGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           T+  V V + GG L I W  + + VFM+G AK  +EG+++I
Sbjct: 236 TDDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276


>gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
 gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
          Length = 281

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 143/292 (48%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G GN  + +D+      + +  +    +D +T    D ++LI     A  DA +R
Sbjct: 3   FTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DARMR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVD 119
           + N DGSE + CGNG+RCV +++      +++  T ET  G+L  +    + R   + V+
Sbjct: 61  MFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVRVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+PIL+   IP   + D        +G            VSMGNPH I FV D L    
Sbjct: 121 MGQPILESAKIPTTLAGDPPVEADLQVGDQTLKVT----CVSMGNPHCITFV-DKLSDEW 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + KH +F   VN     V S   L++R WERG G T ACG+ ACA  VA    
Sbjct: 176 VHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGVLS 235

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            +  R V++ +LGG L +EW  +   VFMTG A       +++ +G+W   N
Sbjct: 236 GRCERKVTIHLLGGDLELEWSEETGEVFMTGPA-------VEVYSGEWTGGN 280


>gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
 gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
          Length = 266

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 28/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ++ +R   DN    ++           D ++LI     A  D  +
Sbjct: 3   IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           RI N DGSE + CGN  RC+ ++L       +     ET+ GI +       +N   S++
Sbjct: 61  RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P  D   + L   +                       VSMGNPH + FV D++  
Sbjct: 121 VDMGIPT-DIHEVALGEGY----------------IASKGIAVSMGNPHLVIFV-DEINK 162

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  L  HP+F + VN+   +V +   + +R WERG G+T ACG+ ACA+ VAS 
Sbjct: 163 IKLEEVGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASA 222

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  R  S+ M GG L IEW  +NH++MTG A K ++GK++I
Sbjct: 223 FTDRCGRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266


>gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629]
          Length = 285

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 30/293 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +++    + +   A  ++   D  HF    D ++ I     A  D  
Sbjct: 3   FTKMHGCGNDYVYVNL--FEEKLGDPARVSIYVSDR-HFGIGSDGLITIGPSDKA--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + 
Sbjct: 58  MRIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI--GPVN------HLFLRNPFVVSMGNPHAIF 169
           VDMGEPIL    IP+ ++      D + +   P++      H+       VSMGNPHA+ 
Sbjct: 118 VDMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTC-----VSMGNPHAVV 172

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV DD+  ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  
Sbjct: 173 FV-DDVAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGT 231

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA+V+A     KT+  V V + GG L IE+    NHVFMTG A + + G++DI
Sbjct: 232 CATVMACILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284


>gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16]
 gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16]
          Length = 288

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 147/291 (50%), Gaps = 25/291 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F KM G GN  +V+D  G H  I  T     AL++    HF    DQI+++       
Sbjct: 3   LQFTKMHGAGNDFVVLD--GIHQQIDLTPAQWRALAS---RHFGVGADQILIVEKPSRPD 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++
Sbjct: 58  VDFRYRIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF--VVSMGNPHAIFFV 171
           VDMG P L+   +P  R+     R    D  +   VN    R  +  VVSMGNPHA+  V
Sbjct: 118 VDMGAPELEPARVPF-RAEGLPTRAEGADTLYGLEVNG---RTEWISVVSMGNPHAVQVV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+ ++ +   G ++  H  F   VN    +V    ++ LR +ERG G T ACG+ ACA
Sbjct: 174 -DDVENFPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           +VVA       +  V V   GG L I W      V MTG A   +EG +D+
Sbjct: 233 AVVAGIRRGLLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDL 283


>gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 279

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 139/288 (48%), Gaps = 24/288 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAIFF 170
           V+MG PI +   +P  A  F+K            +  LR         VVSMGNPH +  
Sbjct: 121 VNMGGPIWEPAQVPFTANKFEK------------NYILRTDLQTVLCGVVSMGNPHCVLQ 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED +    +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC
Sbjct: 169 VED-INLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +V         +  V V + GG L IEW    H ++MTG+A   ++G
Sbjct: 228 GAVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDG 275


>gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424]
 gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424]
          Length = 281

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  ++ID R   + + S  +     D   HF    D ++ +     +  D
Sbjct: 3   IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDR--HFGIGADGVIFVLP-GTSQTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+ +F+    K     KS+  +T+ G++  +      ++
Sbjct: 60  YQMRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVT 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L    IP  L    +K+      +   + L       VSMGNPH I FVED +
Sbjct: 120 VDMGLPRLLGSEIPTTLVSRTEKVIDQPIEVAGQSWLVT----CVSMGNPHCITFVED-V 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G     H  F +  N     V   + L +R WERG G+T ACG+ ACASVVA
Sbjct: 175 KSIALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                K++R  +V++ GG L I W + + HV+MTG AK+ + G  ++
Sbjct: 235 GVLTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYEM 281


>gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
 gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
          Length = 276

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 28/290 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           ++ F KM+G+GN  +V+D+     N+ ++ +  L+   + HF    DQ++++       V
Sbjct: 2   LLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLA---DRHFGIGCDQLLVVETPMQPDV 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DG+EV+ CGNG RC  +F+  +    +     ET  GI+      D  I V
Sbjct: 59  DFRYRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRV 118

Query: 119 DMGEPILDWKLIPLARSFDK------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +MG+P+L+   IP   S         +D +   I             VS+GNPHAI  VE
Sbjct: 119 NMGKPLLEPADIPFTASKRANTYTLLVDDEEVSIS-----------AVSVGNPHAIITVE 167

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +    ++  G  +  H  F + VN+   +V S + ++LR +ERG G T ACGS ACA+
Sbjct: 168 D-IDTAPVSILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAA 226

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +V+       ++ ++  + GG L +EWH   H V MTG A   +EG++ +
Sbjct: 227 MVSGQLQGLLDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276


>gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
 gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
          Length = 274

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 148/284 (52%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           RI N DGSEV  CGNG RC  RF     LT++ + K  T ++ R  L   +N D  + V+
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVST-QSGRMTLHVMDNED--VCVN 117

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MGEP  + + +P  A+  +K     + I  +    L    VVSMGNPH +  VED +   
Sbjct: 118 MGEPEFEPQKVPFRAQKVEKT----YIIRAMERTVLCG--VVSMGNPHCVIQVED-IKTA 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++ S G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V     
Sbjct: 171 EVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGIS 230

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
               +R V V + GG L IEW    N ++MTG A   ++G + +
Sbjct: 231 QGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
 gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
          Length = 274

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 142/278 (51%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ +I   + H  L    VVSMGNPH +  V DD+    + 
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQV-DDVETAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E  N+   ++   +++ LR +ERG G T ACGS ACA+ VA G L  
Sbjct: 174 TLGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAA-VAVGILQG 232

Query: 242 TNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +  A V V + GG L I+W    H +FMTG A   ++G
Sbjct: 233 SLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270


>gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 286

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 17/284 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F+KM G+GN  ++I+ M      +TS+ I  LS       FDQ++L+ + ++ +
Sbjct: 8   KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N +G+EV  CGNG RC   F  L    K+++    T    L+     +G++ 
Sbjct: 68  IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P    K I      + ++     I  VN +   N  +VS+GNPH I +V ++L  
Sbjct: 128 VDMGVPCFKLKNI---FGENIIENSLHSIKFVNKII--NYDLVSIGNPHCIIYV-NNLKK 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
           Y +   G  L+ H +F EG+N++   V S   + LR +ERGVG T ACGS ACASV   +
Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             G L      V V +L G L I W   +  ++MTG A   ++G
Sbjct: 242 QQGLLF---NEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDG 282


>gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
          Length = 317

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 17/289 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           ++ ++ F K  G+GN  +++D R   +   +    A   D N       +I      +  
Sbjct: 23  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 82

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +   + SFT  T  G++V +   DG + 
Sbjct: 83  DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 142

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE----- 172
           VDMG PIL  + +P   S +K +        V      N   VSMGNPH I F +     
Sbjct: 143 VDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPN 201

Query: 173 ---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              DDL   +L   G     H MF    N     V S   L +R WERG G T ACG+ A
Sbjct: 202 LKVDDL---NLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGA 258

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           CA VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G
Sbjct: 259 CALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 307


>gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
 gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
          Length = 323

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 145/289 (50%), Gaps = 22/289 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF----DQIMLIHDFQ 56
           M+ F+K +G+GN  ++ID R     ++   IN     +    + HF    D ++L    +
Sbjct: 1   MLQFSKYQGLGNDFVLIDGR--EGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR 58

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRD 113
            A  D  ++I N DGS  + CGNG+RC+ RFL      +  + +  ET+ GI+      D
Sbjct: 59  -ADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQED 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           G I VDMG P LD + IP   +     + +   H+G  +     N   V MGNPH I  V
Sbjct: 118 GQICVDMGSPFLDPESIPTTLTIGSAGLPQGECHLGGTS----LNVAAVGMGNPHVIVPV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           ED L       +G +L KH  F    N+   ++ S   L++R WERG G T ACG+ ACA
Sbjct: 174 ED-LESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           S+VA+  L  ++    V + GG L I W      VFMTG A+  ++G L
Sbjct: 233 SLVAACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVL 281


>gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
 gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 148/284 (52%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           RI N DGSEV  CGNG RC  RF     LT++ + K  T ++ R  L   +N D  + V+
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVST-QSGRMTLHVMDNED--VCVN 117

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MGEP  + + +P  A+  +K     + I  +    L    VVSMGNPH +  VED +   
Sbjct: 118 MGEPEFEPQKVPFRAQKVEKT----YIIRAMERTVLCG--VVSMGNPHCVIQVED-IKTA 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++ S G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V     
Sbjct: 171 EVESLGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGIS 230

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
               +R V V + GG L IEW    N ++MTG A   ++G + +
Sbjct: 231 QGLLDRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
 gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
          Length = 286

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 25/291 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K +G+GN  L+ID R   + + +        D   HF    D ++ +      S D
Sbjct: 3   LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCD--RHFGVGADGVIFLLRGTGES-D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGSI 116
             +R+ N DGS  Q CGNG+RC+ +F+ +   R +     +  +T+ G++V +   DG +
Sbjct: 60  YRMRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQV 119

Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +VDMG+P L  + IP  LA +  K+      +G    L       VSMGNPH + FVED 
Sbjct: 120 TVDMGKPRLLAQQIPTTLAAADQKVVDVPLTVGDRQWLVT----CVSMGNPHCVTFVED- 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DLA  G     HP F +  N    +V   + L +R WERG G+T ACG+ ACA++V
Sbjct: 175 VAALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLV 234

Query: 235 A---SGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           A   +GCL         +V++ GG L I W   + H++MTG A   + G L
Sbjct: 235 AAVLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285


>gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2]
 gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2]
          Length = 277

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 144/282 (51%), Gaps = 15/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  + +D          + I+   +D +       L+        D  +R+ 
Sbjct: 3   FTKMHGLGNDYIYVDAISQKIE-NPNEISKFVSDRHFGIGSDGLVLILPSDVADFKMRMF 61

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121
           N DGSE + CGN +RCV +F+  +    + + T ET+ GI V +   +      + VDMG
Sbjct: 62  NSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKVDMG 121

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EPIL  + IP L+     +D +   I   ++ +  N   VSMGNPHAI ++E+ +  + L
Sbjct: 122 EPILKAEEIPVLSEKHPVIDEE---ITAKDYCY--NFTCVSMGNPHAITYIEN-VDEFPL 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA + AS    
Sbjct: 176 EKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              R  +VK+LGG L IEW++ + H++MTG A   +EG++DI
Sbjct: 236 YVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277


>gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
 gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
          Length = 293

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 140/289 (48%), Gaps = 20/289 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDAS-VD 61
           F KM GIGN  + I      D    D  +AL+    + HF    D ++L+   +  S  D
Sbjct: 5   FVKMHGIGNDYIYIS---GFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEAD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS---------RMKRKSFTFETIRGILVAKENR 112
           A +R+ N DGSE   CGNG+RCV +FL           R+K K     ++   +    +R
Sbjct: 62  AVMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDR 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
              + V+MG PIL    IP     D        +             VSMGNPH + FVE
Sbjct: 122 VRRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE 181

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +   DL   G LL +H  F + VN+ +A+V + +   +RTWERG G+T ACG+ ACA 
Sbjct: 182 D-VASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAV 240

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
           +VA     +T RA  + + GG L +EW  D   V MTG A   +EG  D
Sbjct: 241 LVAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289


>gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803]
 gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803]
          Length = 368

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 148/289 (51%), Gaps = 20/289 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHF----DQIMLIHDF 55
           M+ F+K +G+GN  ++++ R   D   S++I +  +D      +  F    D ++L    
Sbjct: 1   MLQFSKYQGLGNDFILVEGR---DGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPP 57

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENR 112
           Q    +  +RI N DGSE + CGNG+RC+ RFL         +S++ ET  G+++ +  +
Sbjct: 58  QGQG-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQ 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           DG I VDMG P L  +++P   S D     R  +         +   V MGNPH +  V 
Sbjct: 117 DGQIRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVS--REGLTLSLAAVGMGNPHVVVPV- 173

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DDL      + G  L   P+F    N+   +V   + L++R WERG G T ACG+ ACA+
Sbjct: 174 DDLEAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACAT 233

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
           +VA+  +  ++   +V + GG L I W D    VFMTG A   ++G ++
Sbjct: 234 LVAAVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMN 282


>gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
          Length = 279

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 144/285 (50%), Gaps = 22/285 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F KMEGIGN  +  D  G + ++ +D    +    N H     D +++I      + 
Sbjct: 1   MLKFLKMEGIGNDYVYFD--GINQDVPTDE-TFIKKVSNRHIGIGSDGVIII--LPSETC 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG--- 114
           D  +R+ N DGSE + CGNG+RC  +F+  +    + +   ET+ GI   + N  DG   
Sbjct: 56  DFRMRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVT 115

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           S+ VDMGEPI     IP+  S  +M      I    +        VSMGNPH I +V  D
Sbjct: 116 SVCVDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTYYCT----AVSMGNPHVIQYV--D 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              +D+ + G       +F E VN    +V   E L +R WERG G T ACG+ ACA + 
Sbjct: 170 TLDFDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMY 229

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           AS   +K +  V V++LGG L IE  D   +FMTG A+  +EG L
Sbjct: 230 ASYLNNKCDEKVDVELLGGHLQIELRDKK-IFMTGPARTTFEGTL 273


>gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
 gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
          Length = 278

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 136/287 (47%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDAFI 64
           F KM+G+GN  +V D  G    +  DA  A    D       DQI+L+   +    D   
Sbjct: 5   FTKMQGLGNDFVVFD--GVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +    +      T  G +      DG + VDMG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDMGA 122

Query: 123 PILDWKLIPLARSFDKMD-------RDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           P      IP +   +  D        DR   IG            +SMGNPHA+  V DD
Sbjct: 123 PAFTPARIPFSVETETADATYPLEIEDRTLTIG-----------ALSMGNPHAVLIV-DD 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A+ G L+  HP F   VN    ++    ++ LR  ERG G T ACG+ ACA+VV
Sbjct: 171 VESAPVATLGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVV 230

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           +     + +  V V + GG L+IEW    H V+MTG A   +EG+++
Sbjct: 231 SGRRRGRLDERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277


>gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 80  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVV 139

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P  A   D     R  + P++     R    VSMGNPHA+  V DD+ 
Sbjct: 140 DMGAPVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana]
 gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana]
 gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana]
          Length = 362

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 142/292 (48%), Gaps = 23/292 (7%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           ++ ++ F K  G+GN  +++D R   +   +    A   D N       +I      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 133

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +   + SFT  T  G++V +   DG + 
Sbjct: 134 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 193

Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
           VDMG PIL  + +P   S +K +        +  V+     N   VSMGNPH I F +  
Sbjct: 194 VDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW----NVTCVSMGNPHCITFGKKG 249

Query: 173 ------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
                 DDL   +L   G     H MF    N     V S   L +R WERG G T ACG
Sbjct: 250 GPNLKVDDL---NLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACG 306

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           + ACA VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G
Sbjct: 307 TGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 358


>gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
 gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
          Length = 279

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 150/283 (53%), Gaps = 19/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K  G GN  ++++  G  + I   A  A+   D  HF    D ++++   Q A  D
Sbjct: 1   MQFTKWHGQGNDFVIVN--GFQEKIEDYAQAAVKICDR-HFGIGADGLVIVGPSQVA--D 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
             +RI N DGSE + CGN  RCV R++       +   T ET+ G     L+ +     +
Sbjct: 56  FRMRIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRT 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEP L    IP+     + D +  ++  + +    +   VSMGNPH I FV DD+
Sbjct: 116 VRVDMGEPRLKRAQIPM---IGEPDSEAINVPLIVNDKTYDITCVSMGNPHCIIFV-DDV 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +LA+ G L+  HP F    N+   +V +   + +R WERG G+T ACG+ A A++VA
Sbjct: 172 DEINLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVA 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           +    KT R  ++ + GG L++EW ++NHV+M+G A + + G+
Sbjct: 232 AVLNGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGE 274


>gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
 gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
          Length = 276

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 138/283 (48%), Gaps = 22/283 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V+F KM+G GN  +VID       +T+  I  ++       FDQ+++I   ++ SVD   
Sbjct: 3   VNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHF 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+ RF+ +     R+     T+  +L  K   DG +SV MG 
Sbjct: 63  RIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKMGV 122

Query: 123 PILDWKLIP-----LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P  +   IP     +A  +D  +D     +G           VV++GNPHAI  VE  + 
Sbjct: 123 PRFEPTEIPFIASGVANFYDIAVDNQIVKLG-----------VVNIGNPHAIIPVER-IN 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G  L+ H  F EG N+   +V   +++ LR +ERG G T ACGS ACA+V   
Sbjct: 171 AEEVGKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVG 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
                    V V   GG L I+W      V MTG A   + G+
Sbjct: 231 RRCGLLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGE 273


>gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
 gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
          Length = 271

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------KSFTFETIRGILVAKENRD 113
           D  +RI N DGSE + CGNG+RC+ +F+    +        KS+   T+ GI+  +   D
Sbjct: 42  DYSMRIYNSDGSEPEMCGNGIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPD 101

Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           G ++VDMGEPIL  + IP  L +   K+  +   +   N         VSMGNPH I FV
Sbjct: 102 GQVTVDMGEPILTAREIPTTLGQPDGKVIDETLTVAGENWQVT----CVSMGNPHCITFV 157

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    LA  G     H  F   +N     V   + L ++ WERG G T ACG+  CA
Sbjct: 158 -DDVEAVPLADIGPRFEHHEAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCA 216

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            VVA+    K +R  +V++ GG L IEW +NN V+MTG A   + G + +
Sbjct: 217 LVVAAVLNGKCDRQTTVELPGGNLEIEWANNNRVYMTGPATLVFSGDVAV 266


>gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
 gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
          Length = 287

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 144/288 (50%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      N+T   + AL+   + HF    DQ++L+     A VD
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VD
Sbjct: 60  FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119

Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ D + +P A +  +        + P++     R   VVSMGNPHA+  V  D+  
Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVV-GDVEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + + + G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
                +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 239 RRGLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286


>gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
 gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
          Length = 279

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/286 (35%), Positives = 147/286 (51%), Gaps = 21/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  ++ID R C          A+   D  HF    D ++     Q  + D
Sbjct: 3   IEFTKYHGLGNDFILIDNR-CDLTPLITPEMAIRMCDR-HFGIGADGVIFALPGQKGT-D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSI 116
             +RI N DGSE + CGNG+RC+  FLT     SR K   +   T+ G++  +   DG +
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSK-DYYLIHTLAGVIRPQLTDDGQV 118

Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            VDMG P L  + IP  LA    K+      IG  N  +  +   VSMGNPH I FVED 
Sbjct: 119 RVDMGSPRLLAQEIPTTLAPGNSKIINLPLEIG--NQTW--HITCVSMGNPHCITFVED- 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L   G     HP+F +  N    +V +   L +R WERG G+T ACG+ ACAS+V
Sbjct: 174 VASIPLEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           A    +  +R   +++ GG L IEW + +  ++MTG A++ + GK+
Sbjct: 234 AGVLNNLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279


>gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
 gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
          Length = 284

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 21/292 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  ++ID +G   + +  A++          D +MLI     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLI--LPSAKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+   DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVN----HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+ +   IP+A   D    +   I   P+N     L L    +VSMGNPHAI F    + 
Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLS---LVSMGNPHAIHFCTKSVE 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + L   G L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+
Sbjct: 176 EFPLGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAA 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
             L    + V +K+ GG L +EW  +N V++TG+A+        I TG+W+K
Sbjct: 236 QILGYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEI-------IYTGEWLK 280


>gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
 gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
          Length = 292

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 144/300 (48%), Gaps = 36/300 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +     A +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLA---DRHFGVGADQILTVRPSPGAGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++VD
Sbjct: 60  FEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PF--------------VVSMGN 164
           MG P L+   +P          D   + PV+    +  P               VVSMGN
Sbjct: 120 MGRPELEPARVPF---------DTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGN 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+  V DD+    +A  G L+  HP F + VN    ++ +   + LR +ERG G T A
Sbjct: 171 PHAVQLV-DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLA 229

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           CG+ ACA+VVA   L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 230 CGTGACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289


>gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
 gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
          Length = 288

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 23/293 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S   F KM G+GN  + ++M     R     + ++ ++ ++T      D ++LI     A
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNINTGIGA--DGMILICPSDVA 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112
            V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +++
Sbjct: 60  PVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDK 117

Query: 113 DGSISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                +DMG P L  + IP+    D    R+ F     NH +      VSMGNPHA+ FV
Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGDTPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA
Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +VVA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 362

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 142/293 (48%), Gaps = 25/293 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           ++ ++ F K  G+GN  +++D R   +   +    A   D N       +I      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGT 133

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +   + SFT  T  G++V +   DG + 
Sbjct: 134 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 193

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR----NPFVVSMGNPHAIFFVE- 172
           VDMG PIL  + +P      K+  ++        L +     N   VSMGNPH I F + 
Sbjct: 194 VDMGTPILKAQDVPT-----KLPGNKGEAVVQAELVVDGESWNVTCVSMGNPHCITFGKK 248

Query: 173 -------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
                  DDL   +L   G    +H MF    N     V S   L +R WERG G T AC
Sbjct: 249 GGPNLKVDDL---NLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLAC 305

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           G+ ACA VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G
Sbjct: 306 GTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 358


>gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
 gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
          Length = 288

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 21/292 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+   G L    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKLEH-GKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 276

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+     + ++          LF       SMGNPH +  V D++   D+ +
Sbjct: 123 PIFEPNKIPMKAK--QAEKTYILRAGDQTLFCG---AASMGNPHCVTVV-DNVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W  +   +FMTG A   ++G+ ++
Sbjct: 237 DENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276


>gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
 gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
          Length = 277

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 21/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++   C      D         + HF    D ++LI     +  D  
Sbjct: 3   FTKMHGIGNDYVYVN---CFKETVEDPEKTAILVSDRHFGIGSDGLILIK--PSSVADGK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS+   CGNG+RCV +++       + S + ET  GI    L  +  +  ++ 
Sbjct: 58  MEMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P+L    IP     + +  +      VN    R    VSMGNPHA+ +VED + H
Sbjct: 118 VNMGSPVLQAAAIPAVSEKETVIDEPV---TVNGREWRLT-CVSMGNPHAVTYVED-VKH 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     HPMF + VN   A V    ++++R WERG G T ACG+ ACA+ VAS 
Sbjct: 173 LDIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               T   V+VK+LGG L I W    N+V+MTG A   ++G++
Sbjct: 233 LNGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEI 275


>gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
 gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
          Length = 288

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGN HA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNSHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
 gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
          Length = 279

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K +G GN  +++D     D    D         + HF    D +M++   + A  D
Sbjct: 1   MEFTKWQGCGNDFVIVDFL---DREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--D 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDGS 115
             +R  N DG+E + CGNG+RC  R L    R++R+ FT ETI G +V +         +
Sbjct: 56  IRMREFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTA 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEP+L    IP+ R F         I   +  +      VSMGNPH + FV DD 
Sbjct: 116 VEVDMGEPVLAGDAIPV-RGFGMEPVIAQPITVEDRTYAMT--CVSMGNPHCVIFV-DDA 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + LA  G     HP F   +N     V   +   +R WERG G+T ACG+  CA++ A
Sbjct: 172 EGFPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAA 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                  +RA  +++ GG + + WH + H+FMTG A+  + G
Sbjct: 232 GVLCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAG 273


>gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 278

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 38/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D I+L+ D
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGA------------DGILLVLD 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107
            + A  D  +RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+     V
Sbjct: 51  SKLA--DIRMRIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFV 108

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            +      + V+MG+P    + IP+ +   K D     I    + +     +  MG PH 
Sbjct: 109 NEYGLVDKVKVNMGKPSFKREDIPM-QGDPKSDAINTSIVVDGNEYRITSLL--MGVPHT 165

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I FV DDL   D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+
Sbjct: 166 ILFV-DDLEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +CASV+A+       R  SV +  G L IEW D+  VFMTG A++ + G+
Sbjct: 225 GSCASVIAANLNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGE 275


>gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301]
 gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301]
          Length = 276

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 141/283 (49%), Gaps = 22/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+G GN  +VI+       +T++ I  L+       FDQ++L+   + A  D   RI
Sbjct: 7   FTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV  CGNG RC VRF+  +    +   + ET  GI+  K   +G ++V+MG P 
Sbjct: 65  FNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGAPR 124

Query: 125 LDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           L    +P      A S+     D+        + +     VSMGNPHA+  V DD+    
Sbjct: 125 LSPSEVPFIADAAANSYVLEVADQ-------QITIS---AVSMGNPHAVQIV-DDVEIAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G+ +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VVA   L
Sbjct: 174 VVALGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQL 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +    V V   GG L I W   N+ V MTG A   + G ++I
Sbjct: 234 GRLQSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276


>gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
 gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
          Length = 276

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGG 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+     + ++          LF       SMGNPH +  V D++   D+ +
Sbjct: 123 PIFEPSKIPMKAK--QAEKTYILRAGEQTLFCG---AASMGNPHCVTVV-DNVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W  +   +FMTG A   ++G+ 
Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
 gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 141/296 (47%), Gaps = 42/296 (14%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHF--DQIMLIHDF 55
           +   +   KM G+GN  L +D  G  + +  D    A+    +D N     D ++L+   
Sbjct: 4   ERRPIRLTKMHGLGNNYLFLD--GLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPP 61

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
           +D      +RI N DGSE + CGNG+RC+ R +  R   +   F  ET  G +  + + D
Sbjct: 62  RDPGARFRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLD 121

Query: 114 G----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV--------- 160
           G     ++VDMG P L+  +IP+A             GP     +  P  V         
Sbjct: 122 GHRVTGVTVDMGVPRLERGMIPMA-------------GPAGEQAVEVPLEVEAGGERSVF 168

Query: 161 -----SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
                SMGNPH + FV DDL   DL   G     HP F + VN    RV + E + +R W
Sbjct: 169 TVTALSMGNPHCVVFV-DDLEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVW 227

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           ERG G T ACG+ ACA  VA     +T R V+V++ GG L +EW  + HV+MTG A
Sbjct: 228 ERGSGPTLACGTGACAVAVAGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPA 283


>gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 297

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 142/297 (47%), Gaps = 23/297 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +       +
Sbjct: 2   QIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLA---DRHFGVGADQILTVRPSPADGI 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG EV+ CGNG RC  R++  +    R +   +T+ G++  +   DG ++V
Sbjct: 59  DFEYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTV 118

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF----------LRNPFVVSMGNPHA 167
           DMG P  D   +P  A   +   R      P++             + +  VVSMGNPHA
Sbjct: 119 DMGRPRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHA 178

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  VED +    +A  G L+ +H  F + VN    ++     + LR +ERG G T ACG+
Sbjct: 179 VQLVED-VDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGT 237

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282
            ACA+V A   L   +  V V+  GG L I W    +  VFMTG A   +EG++DI 
Sbjct: 238 GACAAVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294


>gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 269

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 21/277 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V+D R     +      ALS   N H     DQ+++I + ++ + D  
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P
Sbjct: 61  MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  IPLA + D +        PV    L+ P  V+MGNPH +F V+D          
Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           GN++    +F E +N++I  VT  + L +RTWERG GLT ACG+ ACA+ VA+      +
Sbjct: 168 GNMIEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVS 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
 gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
          Length = 299

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      N+T   + AL+   + HF    DQ++L+     A VD  
Sbjct: 5   FTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVAGVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  +    ++S   +  +G +      +G + VDMG
Sbjct: 62  YRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMG 121

Query: 122 EPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ D + +P A +           + P++ +   R   VVSMGNPHA+  V DD+  + 
Sbjct: 122 TPVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAFP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A    
Sbjct: 181 VLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRR 240

Query: 240 HKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
              +  V V   GG L I W     +  + M G A   +EG++++ 
Sbjct: 241 GLLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286


>gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49]
          Length = 289

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 19/290 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+  R    R+S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175
           DMG P+     +P  A   +     R  + P++ +  R  ++  VSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFAPAQVPFDAAGLEGRAEGRDTLWPLD-VGGRTRWITTVSMGNPHAVQVV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                  +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287


>gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804]
 gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii]
          Length = 304

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 19/289 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F KM G GN  +V+D      +IT +   AL+   + HF    DQI+L+        D 
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQAIDITPERARALA---DRHFGIGADQILLVEPPTHPEADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDM
Sbjct: 67  RYRIFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDM 126

Query: 121 GEPILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           G    D   +P         A+  D + +      P           V++ NPHA+  V 
Sbjct: 127 GVTRFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQV- 185

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+    +A+ G L+ +HP F+  VN    +V    S+ LR +ERG G T ACG+ ACA+
Sbjct: 186 DDVDAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAA 245

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           V A       +  V V   GG L ++W +  H+ MTG A   + G++DI
Sbjct: 246 VAAGIRRGLLDSPVRVHTRGGTLTVDW-NGEHLRMTGPATSVFTGQVDI 293


>gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
 gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
          Length = 289

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T+  + AL++    HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175
           DMG P+   + +P  A   D     R  + P+  +  R  ++  VSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFAPEQVPFDASGLDGRSEGRDTLWPL-EVGGRTRWISTVSMGNPHAVQVV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
                  +  V+V   GG L I W     ++  + M G A   +EG++D+ 
Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLP 288


>gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu]
          Length = 289

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALA---NRHFGVGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+  +    ++S   E ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVV 119

Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ +   +P   +        R  + P++     R    VSMGNPHA+  V DD  
Sbjct: 120 DMGAPVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y + + G L+ +H  F++ VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 RYPVLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 239 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDL 287


>gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 276

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 142/287 (49%), Gaps = 22/287 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V F KM+GIGN  +V+D       +    I+ L+  +    FDQ+++I   Q    D  
Sbjct: 2   IVPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSE   CGNG R V +++  +    ++     T    +      +G I+++MG
Sbjct: 62  FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINMG 121

Query: 122 EPILDWKLIPL--ARSFDKMDRD----RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +P L+ + IPL  A+  +    D    R+ IG            VSMGNPH +  VED +
Sbjct: 122 KPRLEPEKIPLRFAQQSETYMIDAEGIRYKIG-----------AVSMGNPHCVLQVED-I 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G +L+ H  F    N+   +V     + LR +ERGVG T ACG+ ACA+VVA
Sbjct: 170 DKAAVGKVGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVA 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                  +  V V + GG L I W    + V+MTG AK  +EG++D+
Sbjct: 230 GRLQKILDEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276


>gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
 gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
          Length = 289

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T+  + AL++    HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175
           DMG P+   + +P  A   D     R  + P+  +  R  ++  VSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFAPEQVPFDASGLDGRTEGRDTLWPL-EIGGRTRWISTVSMGNPHAVQVV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAYPVLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
                  +  V+V   GG L I W     ++  + M G A   +EG++D+ 
Sbjct: 238 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLP 288


>gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 286

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 149/289 (51%), Gaps = 22/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           F K  G GN  ++ID R    +    SD    +    +  F    D ++ I +  D +  
Sbjct: 6   FEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILE-PDRNNY 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSIS 117
           A + I N DGSE Q CGNG+RC+V++L +  K       +  ET  GI +A+ N +G I+
Sbjct: 65  AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGEIT 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVEDD 174
           V MG+PIL+ K IP      K+D     I         F +  + V MGNPH IFF++D 
Sbjct: 124 VKMGKPILETKSIP-----TKIDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQD- 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L+  G +  KH +F E  N+  +++ + +++++R WERG G T ACG+ ACA  V
Sbjct: 178 ITKISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHV 237

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           A+  L   N    + + GG L+I W    + + MTG AKK + G   +K
Sbjct: 238 AAYKLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286


>gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 304

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 158/303 (52%), Gaps = 40/303 (13%)

Query: 1   MQSSMV---DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH 53
           +Q  MV    F KM+G GN  + ++   C +   +D         +  F    D ++LI 
Sbjct: 20  LQKGMVANMKFTKMQGCGNDYVYVN---CFEETINDPNGVAKKVSDRRFGIGSDGLILIK 76

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LV 107
             + A  D  + + N DGS+ + CGNG+RCV +++      ++ S   ET+ G+    L+
Sbjct: 77  PSEIA--DFTMHMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALI 134

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKM--------DRDRFHIGPVNHLFLRNPFV 159
               +   ++VDMGEP LD KLIP+A   +++        DR+ +  G            
Sbjct: 135 VDGGKVTEVTVDMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG------------ 182

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VS+GNPHA+ F+ED    + + ++G L  +HP+F E +N    ++   +++++R WERG 
Sbjct: 183 VSVGNPHAVTFIEDT-NSFPIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGS 241

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
             T ACG+ A  SV A+     T   V+V MLGG ++I +  + N +FMTG A   ++G+
Sbjct: 242 AETHACGTGATCSVYAAILNGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGE 301

Query: 279 LDI 281
           +++
Sbjct: 302 IEL 304


>gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 309

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 142/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    R+S   + ++G++      +G + V
Sbjct: 80  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVV 139

Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P   S  D        + P++     R    VSMGNPHA+  V DD+ 
Sbjct: 140 DMGAPVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 259 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
 gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
          Length = 288

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+  V D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
 gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
          Length = 276

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 14/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  +     +      T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I  V     R  F  VVSMGNPH +  V DDL    +
Sbjct: 123 PEFEPSKIP----FRAKQTEKTYIMRVGE---RTIFCGVVSMGNPHCVTVV-DDLDLTGV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 ETLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   ++MTG     ++G++
Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
 gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
          Length = 290

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 145/289 (50%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++   C +    +         + HF    D ++LI     A  D  
Sbjct: 11  FTKMHGIGNDYVYVN---CFEESIKNPAEVSKFVSDRHFGIGSDGLILIS--PSAKADFR 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + I N DGS+ + CGNG+RCV +++       +   + ET+ GI    L  +  +  ++ 
Sbjct: 66  MNIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVATVE 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG PIL+ K IP+A   + +      + G   H+       VSMGNPHAI F+ D++ 
Sbjct: 126 VNMGAPILEPKKIPVAVENNPVVDVPVEVKGKTYHMTC-----VSMGNPHAIIFM-DNVK 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+ + G     HP+F +  N     V    ++++R WERG   T ACG+ ACA+ VA 
Sbjct: 180 ELDIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTVAC 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTG 284
              +KT   V+V +LGG L I W    N V+MTG A   ++G++ +  G
Sbjct: 240 ILNNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288


>gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110]
 gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110]
          Length = 294

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 144/293 (49%), Gaps = 20/293 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS-- 59
           + F KM+G GN  +V+D       +T+     L+   + HF    DQI+ +      +  
Sbjct: 3   IRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLA---DRHFGVGADQILTVRPPSKGAAE 59

Query: 60  -VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
            VD    I N DG EV+ CGNG RC +RF+       + +   ET+ GI+  +   DG +
Sbjct: 60  GVDFQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRV 119

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG PI +   +P      D      +H     +G      + +  V+SMGNPHA+  
Sbjct: 120 TVDMGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQV 179

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D++    +A  G L+  HP F++ VN    +V     + LR +ERG G T ACG+ AC
Sbjct: 180 V-DNVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGAC 238

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
           A+VVA   L    R V V+  GG L I W    H V MTG A   +EG +++ 
Sbjct: 239 AAVVAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVP 291


>gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
 gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
          Length = 296

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64
           F KM+G GN  +V+D     + +T          D       DQ++++    +  +D   
Sbjct: 5   FTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDFTY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI+N DGSEV+ CGNG RC VR++      K+ +    T  G++  +   DG ++VDMG 
Sbjct: 63  RIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDMGA 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIF----FVEDDLY 176
           P+ +   +P  A      + + F + P++         VVSMGNPHA+     F    + 
Sbjct: 123 PVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGGVD 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+ +H  F + VN    +V S   + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 183 EAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVVAG 242

Query: 237 GCLH--KTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282
             L   +    V V   GG L IEW    +  V+MTG A+  + G++D+ 
Sbjct: 243 IRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLP 292


>gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
 gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
          Length = 286

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 148/287 (51%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F K +G GN  ++ID RG   + N  ++ I  +    N  F    D ++ I +  + +
Sbjct: 4   ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115
               I I N DGSE Q CGNG+RC+V +L    +   +   +  ET  G+ +AK   D  
Sbjct: 64  YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I+V MG PIL+ + IP  + +  + +    F    +   F    + V MGNPH IFFV+D
Sbjct: 122 ITVKMGVPILEGQNIPTTIEKKINSIPSHEF----IEKDFSNMGYAVGMGNPHLIFFVKD 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  
Sbjct: 178 -IESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIH 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+  L   N    V + GG L I+W  D+  V MTG AKK + G +
Sbjct: 237 VAAYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283


>gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
 gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
          Length = 309

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 142/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 80  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 139

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P  A   D     R  + P++     R    VSMGNPHA+  V DD  
Sbjct: 140 DMGAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAG 258

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
 gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/275 (36%), Positives = 140/275 (50%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T     AL+       FDQ+ +I   Q    DA +
Sbjct: 24  LPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVISQGQR---DAHL 80

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +      T RG L A +  +G  +V+MG+P 
Sbjct: 81  TFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAVNMGQPQ 140

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L+W+ IPLA + D ++       P+       P    MGNPH  FFVED      L  FG
Sbjct: 141 LEWQDIPLAEAMDTVEL------PIEG----GPSATGMGNPHCTFFVED-AEAIPLEQFG 189

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +  VT  + L +R WERGVG T A GS++CA+ VA+     T R
Sbjct: 190 PRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAARRGLTGR 249

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG L I+W ++  V+MTG     ++G L
Sbjct: 250 KVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVL 283


>gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 269

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V+D R     +      ALS   N H     DQ+++I + ++ + D  
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P
Sbjct: 61  MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  IPLA + D +        PV    L+ P  V+MGNPH +F V+D          
Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           GN++    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +
Sbjct: 168 GNMIEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVS 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
 gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
          Length = 286

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F K +G GN  +VID RG   + N  ++ I  +    N  F    D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGS 115
               I I N DGSE Q CGNG+RC+V +L    +   K   +  ET  G+ +AK   D  
Sbjct: 64  YAKMI-IFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I+V MG PIL+ + IP  +    + +    F    +   F    + V MGNPH IFFV+D
Sbjct: 122 ITVKMGVPILESQNIPTKIENKINSIPSHEF----IQKNFKYIGYAVGMGNPHLIFFVQD 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L    L+  G +   + +F E  N+   ++ + +++ ++ WERGVG T ACG+ ACA  
Sbjct: 178 IL-SIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIH 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+  L   N    V + GG L I+W  D+  V MTG AK+ + G +
Sbjct: 237 VAAYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283


>gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
 gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
          Length = 274

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 135/277 (48%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  D + +P    F     ++ +I     H  L    +VSMGNPH +  V DD+    +A
Sbjct: 121 PNFDPQAVP----FRATKAEKTYIMRAAEHTVLCG--IVSMGNPHCVLQV-DDVNTAKVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V++ GG L I W    + +FMTG A   ++G
Sbjct: 234 LSEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDG 270


>gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307]
 gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307]
          Length = 357

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 137/285 (48%), Gaps = 14/285 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R      +  D    L         D ++L    Q    D  ++
Sbjct: 19  FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDMGE 122
           I+N DGSE + CGNG+RC  RFL       S T    ET  G+++ +      ++VDMGE
Sbjct: 78  ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137

Query: 123 PILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P L+   IP  LA      D +   +  ++         V MGNPHA+  V DDL   D 
Sbjct: 138 PFLEPASIPTNLAAGTPLPDGE-LQVAGISLQVA----AVGMGNPHAVVQV-DDLESLDF 191

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L +HP F    N+   +V + + L +R WERG G T ACG+ ACA+VVA+    
Sbjct: 192 DRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRG 251

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
              R  +V++ GG L I+W   NH+ M G A   +EG L    G 
Sbjct: 252 ACARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVLPAAGGS 296


>gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
 gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
          Length = 366

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R     D+I+      +S   +  F    D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115
             +  +RI+N DGSE + CGNG+RC+ R+L         + +  ET+ G++  +   D  
Sbjct: 60  EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFV 171
           + VDMG P L  + IP       M  D     P   L L +  +    V MGNPH +  V
Sbjct: 120 LRVDMGPPFLTPEAIPTT----VMPEDGL---PQGVLLLEDEQIRVASVGMGNPHVVVPV 172

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DDL      ++G  L  HP F    N+   +V S E L++R WERG G T ACG+ ACA
Sbjct: 173 -DDLASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACA 231

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           ++VA+  L   +    V + GG L+IEW D +  V MTG A+  ++G
Sbjct: 232 TLVAAVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDG 278


>gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
 gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
          Length = 288

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 146/281 (51%), Gaps = 19/281 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+  V D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           VA+    K  R   ++V + GG L+I W +  +V M G A+
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAE 275


>gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568]
 gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568]
          Length = 274

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +    +   + +    H  L    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFDPQTVPFRAT---KEEKTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           +  V V++ GG L I W    + +FMTG A   ++G
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDG 270


>gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083]
 gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083]
          Length = 273

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 14/232 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V D R     +T   + A++       +DQ++ I +   A ++  +
Sbjct: 9   LPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTADIE--L 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+  +  +R  ++  +  T RG+L A +   G I V+MG+P+
Sbjct: 67  VFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMGQPM 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW  +PLAR  D ++       P+       P   SMGNPH  FFV +D+   +L +FG
Sbjct: 127 TDWHEVPLAREMDTLEL------PIEG----KPTATSMGNPHCTFFV-NDVDAINLEAFG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +  HP+F E  N+ IA++     + +R WERGVG+T A GS++CA  VA+
Sbjct: 176 PTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAA 227


>gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 302

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L    + HF    DQI+ +       +D
Sbjct: 16  IQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLG---DRHFGVGADQILTVRPSPAEGID 72

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG+EV+ CGNG RC  RF+  +    +     +T++G++      DG ++VD
Sbjct: 73  FEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTVD 132

Query: 120 MGEPILDWKLIPL---ARSFDKMDR-DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVED 173
           MG P+ +   IP      S   M     + + PV         V  VSMGNPHA+  V D
Sbjct: 133 MGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLVAD 192

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    +A+ G  +  +P F++GVN+   +V S   + LR +ERGVG T ACG+ ACA+V
Sbjct: 193 -VDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAAV 251

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           VA   L   +  V V+  GG L I W      VFMTG A   + G++++ 
Sbjct: 252 VAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELP 301


>gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1]
 gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1]
          Length = 276

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + D I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPDLIRRLA-DRHTGVGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    + S +  T +G +V K   +  ++V+MG+P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   IP    F    +++ +I     + LF      VSMGNPH +  V D     D+ 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYILRAGEHTLFCG---AVSMGNPHVVTVV-DSTEEADVD 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V        
Sbjct: 176 RLGPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKL 279
            +  V+V + GG L I W    H   MTG A   ++G++
Sbjct: 236 LDENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQI 274


>gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3]
 gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3]
          Length = 288

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    +G ++
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VAS    K  R   + V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VASILNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
 gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
          Length = 280

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 22/290 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           ++ + F KM+G GN  + ++      +   D I A       H     D ++LI   + A
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTL---SSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
             D  +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +    +
Sbjct: 59  --DFSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGV 116

Query: 117 ----SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
               +VDMG P+L        ++   +       G       +  FV  MGNPH + FV 
Sbjct: 117 VKDVTVDMGTPLLSNPGQIATKTGGMLAETILADGKE----YKGTFVC-MGNPHVVIFV- 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+   DL + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+
Sbjct: 171 DDIKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACAT 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            VA+   HK  R   V+M GG L I W + + HV+MTG A K +EG++++
Sbjct: 231 AVAAVLNHKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIEM 280


>gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
 gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
          Length = 279

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 25/290 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           +++F KM GIGN  + +D   C        DA+       + H+    D I+LI     A
Sbjct: 2   ILNFTKMHGIGNDYIYVD---CFKEKFTVEDAMKYSPILSHRHYSIGADGIILIMPSDKA 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENR 112
            V   +R+ N DGSE + CGNG+RCV ++   +   K      ET+RGIL AK    +N 
Sbjct: 59  DVQ--MRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNE 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
             S+ ++M  PIL+   IP       +D++     P+        F  VSMGNPH + FV
Sbjct: 117 ADSVEINMDSPILEGLKIPTT-----IDKNVIIDEPITFNGKTYYFTCVSMGNPHTVIFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+ + D+A  GN +  + +F    N+    V +   +  RTWERG G T ACG+ A A
Sbjct: 172 -DDVSNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASA 230

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             VA     +T+  +   +LGG L++ + +NN VFM GEA+  +EG + +
Sbjct: 231 VCVAGFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279


>gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114]
 gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114]
          Length = 276

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G ++ K   D  I+V+MGE
Sbjct: 65  FNADGSEVEQCGNGARCFARFV--RMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +   IP    F     ++ ++  V+   L +   VSMGNPH +  V DD+  YD+  
Sbjct: 123 PVFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHCVT-VVDDVDAYDVDK 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G L+  H  F E VN    ++ S   + LR +ERG G T ACGS AC +V         
Sbjct: 177 YGQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 237 GEEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
 gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
          Length = 276

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  LV+D    +  ++ + I   +  +    FDQ++++    D  +D  
Sbjct: 2   LVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
            RI N DGSEV  CGNG RC  +F+  RMK    +      T  G +     RDG+ISV 
Sbjct: 62  YRIYNADGSEVGQCGNGARCFAKFV--RMKGLCNKHKIKVSTSTGKMNLHIERDGNISVT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  P  + K IP      +     + +   +   L     VSMGNPH +  V D +   D
Sbjct: 120 MPVPQFEPKKIPFTA---QKTEGTYILRSESETVLCG--AVSMGNPHCVVTV-DSVAEAD 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + S G  L+ H  F E  N+    + S   + LR +ERG   T ACGS ACA+VV     
Sbjct: 174 VESLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            K  + V+V++ GG L I W    H V M+G A   ++G++ I
Sbjct: 234 KKLAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276


>gi|255636095|gb|ACU18392.1| unknown [Glycine max]
          Length = 359

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           +S  + FAK  G+GN  ++ID R   +   S        D N       +I      S  
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGT 130

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++ 
Sbjct: 131 DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVR 190

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           VDMGEPIL    +P     +K    +  +    G + H+       VSMGNPH + F  +
Sbjct: 191 VDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVT-----CVSMGNPHCVTFSRE 245

Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ 
Sbjct: 246 GSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTG 305

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           ACA+VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 306 ACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
 gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
          Length = 280

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 150/288 (52%), Gaps = 18/288 (6%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI   +    D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDM     D  L+  +R  +  D         V+    +  FV  MGNPH + F+ DD
Sbjct: 120 VTVDM-----DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + + +L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ V
Sbjct: 173 IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           A+   HKT R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 233 AAYLNHKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max]
          Length = 359

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 141/294 (47%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           +S  + FAK  G+GN  ++ID R   +   S        D N       +I      S  
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGISGT 130

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++ 
Sbjct: 131 DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNVR 190

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           VDMGEPIL    +P     +K    +  +    G + H+       VSMGNPH + F  +
Sbjct: 191 VDMGEPILKXXDVPTKLHANKDNAVVKSELVVDGVIWHVT-----CVSMGNPHCVTFSRE 245

Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ 
Sbjct: 246 GSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTG 305

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           ACA+VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 306 ACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
          Length = 387

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T+  + AL++    HF    DQ++L+        
Sbjct: 101 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALAS---RHFGIGADQLLLVEKPTVDGA 157

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 158 DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 217

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175
           DMG P+   + +P  A   D     R  + P+  +  R  ++  VSMGNPHA+  V DD 
Sbjct: 218 DMGAPVFAPEQVPFDASGLDGRSEGRDTLWPLE-VGGRTRWISTVSMGNPHAVQVV-DDA 275

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 276 EAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAA 335

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                  +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 336 GIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387


>gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012]
 gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 280

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 269

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 21/277 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V+D R     +      ALS   N H     DQ+++I + ++ + D  
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALS---NRHTGIGCDQLIIIGNGKNQA-DVS 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P
Sbjct: 61  MEIWNADGSEVEACGNATRCVPVFLG-----RDVIISTAAGLLDARLSDEGA-CVDMGRP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  IPLA + D +        PV    L+ P  V+MGNPH +F V+D          
Sbjct: 115 RLSWDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHVVFVVDDVDAVD-FGRL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           GN++    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +
Sbjct: 168 GNIIEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLIS 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 228 GKTQIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 280

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 277


>gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12]
 gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12]
          Length = 287

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 143/288 (49%), Gaps = 17/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           V F KM G GN  +V+D       + +  +  L+   + HF    DQI+L+       VD
Sbjct: 3   VAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLA---DRHFGVGADQILLVEAAPSPEVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VD
Sbjct: 60  FGYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVD 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
           MG P+ D   +P  A        D +   P++ L     +V  +SMGNPHA+  V DD+ 
Sbjct: 120 MGAPVFDLPRVPFEAHGLRPRQVDGWEQWPLD-LAGATAWVSVLSMGNPHAVQRV-DDVD 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA 
Sbjct: 178 TAPVLRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVA- 236

Query: 237 GCLHK-TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
           G  H     AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 237 GLRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284


>gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18]
          Length = 275

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 4/265 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +D  KM+G+GN  ++ D R    ++T D I  +S   N   DQ++ I +  D + +  + 
Sbjct: 4   LDAYKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDN--DKNNNTSLT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG E+ +CGNG RC    L      K  +  T  GIL A+      + ++MG+P  
Sbjct: 62  FYNSDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQPNF 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL++  D  +  +  I   +   +   F +S+GNPH IFFVED    ++L   G 
Sbjct: 122 KWGKIPLSKEMDNKNL-KIKINSTDDKEIEGGFSLSVGNPHIIFFVED-FNKFNLKEIGP 179

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H  F E  N+++A + + + + ++ WERG GLT ACG+AACA+ VA   L    R 
Sbjct: 180 KIENHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNERY 239

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGE 270
           V ++   G L I+W+ +N+++MTG+
Sbjct: 240 VDIEFQEGLLNIDWNADNNIYMTGK 264


>gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
 gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
          Length = 274

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 141/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ +I   + H  L    VVSMGNPH +  VED +    + 
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVED-VETAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F +  N+   +V   +++ LR +ERG G T ACGS ACA+ VA G L  
Sbjct: 174 TLGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAA-VAVGILQG 232

Query: 242 TNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              A V V + GG L I+W    H +FMTG A   ++G
Sbjct: 233 LLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270


>gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
 gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
          Length = 292

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 135/286 (47%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIA---DRHFGVGADQLLLVERSTRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 62  YRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLY 176
            P+ +   +P      +    R       H    N        VSMGNPHA+  V DD  
Sbjct: 122 APVFEAARLPF---LPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIV-DDTE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 178 AFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V   GG L I W      V MTG A   +EG LD+
Sbjct: 238 IRRGVLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDL 283


>gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 275

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G+GN  +V+D      N+    I  L+   + HF    DQ++L+    +   D
Sbjct: 3   LKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLA---DRHFGIGCDQLLLVEK-AEGQAD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC VR++      +      ET+ G++  +   +G+I+V+
Sbjct: 59  FRYRIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVN 118

Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG+PI + + IP +A       +      PV    L      SMGNPHA+  V  D+   
Sbjct: 119 MGKPIFEPERIPFIADQCALTYQLELPDSPVTICAL------SMGNPHAVRVV-TDIARA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A+ G L+ +H  F   VN+   +V     + LR +ERG G T ACG+ ACA+VVA   
Sbjct: 172 PVATEGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGIT 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           L   +R V V   GG L I W      V+MTG A   +EG++++
Sbjct: 232 LGLLDRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275


>gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 274

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 138/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ +I   + H  L    VVSMGNPH +  VED +    + 
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVED-VETAKVD 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V        
Sbjct: 174 TLGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            + +V V + GG L I+W    H +FMTG A   ++G
Sbjct: 234 LSASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDG 270


>gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
 gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
          Length = 294

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 22/294 (7%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFV 171
           DMG P+     +P       A   D     R  + P++     R    VSMGNPHA+  V
Sbjct: 120 DMGAPVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV 179

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+  Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA
Sbjct: 180 -DDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACA 238

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
           +V A       +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 239 AVAAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDL 292


>gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
 gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
          Length = 288

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 17/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F KM G GN  +V+D  G H   ++T++   AL++    HF    DQ++++       
Sbjct: 3   LQFTKMHGAGNDFVVLD--GIHQKLDLTTEQWRALAS---RHFGVGADQMLIVEKPTRED 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++
Sbjct: 58  VDFRYRIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDL 175
           VDMG P L+   +P       +      I     +  R  ++  VSMGNPHA+  V DD+
Sbjct: 118 VDMGAPELEPARVPFRPDGLPVRTQGEDIAYGLEINGRTAWISPVSMGNPHAVQVV-DDV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            ++ +   G L+  H  F   VN    +V    +  LR +ERG G T ACG+ ACA+VVA
Sbjct: 177 ENFPVLQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                  +  V V   GG L I W      V MTG A   +EG +D+
Sbjct: 237 GIRRGLLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDL 283


>gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
 gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
          Length = 278

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 144/284 (50%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  ++ID R  H +     +       + HF    D ++     Q+ + D
Sbjct: 3   IEFTKYHGLGNDFILIDNR--HQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQNGT-D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             +RI N DGSE + CGNG+RC+ +F   L     +  +  +T+ G++  +   DG + V
Sbjct: 60  YTMRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P L    IP   + +  DR      +      +L     VSMGNPH I FVED + 
Sbjct: 120 DMGIPRLLAAEIP--TTLESPDRKVVELPLEVAGQSWLVT--CVSMGNPHCITFVED-VS 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G L   H +F +  N    ++   + + +R WERG G+T ACG+ ACASVVA 
Sbjct: 175 AIALETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               K +R  +V++ GG L IEW   +  ++MTG A + + GK+
Sbjct: 235 VLAGKCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278


>gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032]
 gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032]
          Length = 274

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PVFEPSLVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   ++ + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
              V V + GG L I W    N +FMTG A   ++G
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDG 270


>gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 278

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 11/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM G+GN  ++++  G        A+     D         L+     A+ D  +R
Sbjct: 1   MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSAAADLRMR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---SISVDM 120
           + N DGSE + CGN +RCV  +   R  + +     ET+ G++  +   DG   ++ VDM
Sbjct: 61  VFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+   IP+      +  +    G  + +       VSMGNPH + F   DL     
Sbjct: 121 GRPRLERAEIPMRGPAGPVVGEVLDAGERSFMVT----AVSMGNPHCVVF-GADLDDAGF 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G LL  HP F    N+    V S   + +R WERGVG T ACG+ ACA  VA     
Sbjct: 176 RKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVLTG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
           +T R V V++ GG LLIEW D+   V+M+G A++ ++GK
Sbjct: 236 RTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274


>gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
 gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
          Length = 279

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K  G+GN  +++D R     + +    A+   D  HF    D ++     ++ + D
Sbjct: 3   IEFTKYHGLGNDFILVDNRASSLPVLTPE-QAIQLCDR-HFGIGADGVIFALPGENGA-D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+ RF+         + S+   T+ G++  +   DG + 
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVK 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L    IP  L  +  K+      +             VSMGNPH I FV  D+
Sbjct: 120 VDMGLPRLLAGEIPTTLGTAETKVINQPLEVAGQTWEVT----CVSMGNPHCITFV-SDV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G     HP F + +N    +V S + + +R WERG G+T ACG+ ACAS+VA
Sbjct: 175 AAIPLEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                  +R  +V++ GG L IEW + +  ++MTG A+K + G+L
Sbjct: 235 GVLTGNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279


>gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 274

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 8/262 (3%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM+G+GN  ++ID R  +  ++ D I  +   +    DQ+++I   ++  +DA +   N 
Sbjct: 7   KMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELEFYNS 64

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGEPILDW 127
           DGS   +CGNG RCV  FL+    +K  T  T  G+L  K N  GS  +  ++G P  +W
Sbjct: 65  DGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVL--KSNILGSNLVETEIGTPKTNW 122

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPL+++ D  + +   I   N+        V++GNPH +FFV+D + ++DL   G  +
Sbjct: 123 NEIPLSKNLDTKNLN-IKILSKNNTEHIGGAAVNVGNPHIVFFVKD-IENFDLKKIGPEI 180

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H +F E  N+++A+V +   + ++ WERG GLT ACG+AACAS +A        +   
Sbjct: 181 ENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKKTD 240

Query: 248 VKMLGGGLLIEWHDNNHVFMTG 269
           ++   G L I     N V M G
Sbjct: 241 IEFKLGKLSIFIDAKNSVHMKG 262


>gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
 gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
          Length = 290

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 153/301 (50%), Gaps = 41/301 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++    D +T    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      +  ++F  ET+ G++ A+    +    S+
Sbjct: 63  -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVADGEVTSV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPH 166
           +VDMGEP L+   IP+             +GP     +  PF           VSMGNPH
Sbjct: 122 TVDMGEPRLERSAIPM-------------LGPEAERVVAEPFAIAGGEYEITAVSMGNPH 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            IF+V DD+    + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG
Sbjct: 169 VIFYV-DDIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACG 227

Query: 227 SAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           + ACA+VVAS    KT R     V + GG L I W  +  V MTG A+    G    + G
Sbjct: 228 TGACAAVVASVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGG 287

Query: 285 K 285
           +
Sbjct: 288 R 288


>gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 262

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 147/266 (55%), Gaps = 17/266 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID R  ++       N     D +  DQ+++I      + D F+ I
Sbjct: 8   NFIKMHGTGNNFVIIDSRSTNN----LDWNHRQIADQSSCDQVIIIT--MSNAADCFMHI 61

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS  + CGN  RCV   + S    +    E T + IL   +  D SI V+MG+P+L
Sbjct: 62  YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +     H+ P+    L++P  V++GNPH +FFV D++    L + G 
Sbjct: 122 KWHEIPLSTECDTL-----HL-PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL-HKTNR 244
            L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS    +   +
Sbjct: 175 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVAQ 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGE 270
             SV + GG LLIEW +N  VFMTG+
Sbjct: 235 QTSVNLPGGKLLIEWANN--VFMTGD 258


>gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 278

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 149/291 (51%), Gaps = 38/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D ++L+ D
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLD 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110
            + A  D  +RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+  +   
Sbjct: 51  SKLA--DIRMRIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFI 108

Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           N  G    + V+MG+P    K IP+ +   K D     I    + +     +  MG PH 
Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPM-QGDPKSDAINTSIVVDGNEYRITSLL--MGVPHT 165

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I FV DDL   D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+
Sbjct: 166 ILFV-DDLEKVDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +CASV+A+     T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 225 GSCASVIAANLNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGE 275


>gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
 gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
          Length = 284

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D  R   +N    +    +       D ++LI     A  D  +
Sbjct: 5   IKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE + CGN  RC+ ++L       +   T +T+ GI + K +  G    +++V
Sbjct: 63  RIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDTVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P  D  +    +    M      I  + +        VSMGNPH + FV +D+   
Sbjct: 123 DMGIP-SDEPVNYDGKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDITKA 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL+S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 237 TGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
 gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
          Length = 277

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 138/285 (48%), Gaps = 24/285 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VID      ++T + +  L+   + HF    DQ++++ +     VD  
Sbjct: 5   FTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLA---DRHFGIGCDQLLVVEEATRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+  +    ++    ET  GI+  +   DG ++VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P+L+   +P     D +         V  L +    V    VSMGNPHA+  V D    
Sbjct: 122 VPVLEPARVPFVSDSDAI---------VQPLDVGGETVAITAVSMGNPHAVQVVADVDAA 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
              A  G L+ +HP F   VN    +V     + LR +ERG G T ACG+ ACA+VV   
Sbjct: 173 PVAAQ-GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVI 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                   V V+  GG L I W      V MTG A   + G++D+
Sbjct: 232 LRELAQSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDV 276


>gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 278

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 147/291 (50%), Gaps = 38/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D ++L+ +
Sbjct: 3   FSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLN 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107
              A  D  +RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+     V
Sbjct: 51  SDIA--DIRMRIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFV 108

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            +      + V+MG+P    K IP+    +    +   +   N   + +   + MG PH 
Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRITS---LLMGVPHT 165

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I FV DD+   D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+
Sbjct: 166 ILFV-DDVEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +CASV+A+     T R  +V +  G L I+W D++ VFMTG A++ + G+
Sbjct: 225 GSCASVIAANLNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGE 275


>gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
 gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
          Length = 278

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RFL  +    +K     T  G +  +   D  + V+MGE
Sbjct: 65  RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+   + IP   +        + +    H  L    VVS+GNPH +  VED +   ++A 
Sbjct: 125 PVFTPRQIPFCAT---TTEKTYILRTAGHTTLCG--VVSIGNPHCVLQVED-VATANVAL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F +  N+   ++   ++++LR  ERGVG T ACGS ACA+V         
Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           ++ V VK+ GG L I+W    H ++MTG A   ++G + +
Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278


>gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
 gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
          Length = 269

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 147/288 (51%), Gaps = 35/288 (12%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ +R         AI   +       D ++LI     A  D  +
Sbjct: 5   IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G    +++V
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P+            D +D D              PF+   VSMGNPH + FV DD+
Sbjct: 123 DMGVPL----------ETDTIDFDG-----------EFPFLSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 309

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 142/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 80  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVV 139

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P  A   D        + P++     R    VSMGNPHA+  V DD+ 
Sbjct: 140 DMGAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVE 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 199 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 258

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 259 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
 gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
          Length = 281

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 22/288 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           M+  M  F KM+G+GN  + ++   C      D         + HF    D ++LI+  +
Sbjct: 1   MEKKM-KFTKMQGLGNDYVYVN---CFKEKIEDPSALAVRISDRHFGVGSDGLILINPSK 56

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKE 110
            A  D  + + N DGS  + CGNG+RCV +++       +++ + ET+ GI       + 
Sbjct: 57  VA--DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIEN 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            +   + VDMG PIL    IP+    ++   +   +    +        +SMGNPHAI +
Sbjct: 115 GKVAKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYRMT----CISMGNPHAIVY 170

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+ +  +   G L  KH  F   VN    +V    ++++R WERG G T ACG+ AC
Sbjct: 171 V-DDVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGAC 229

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           A+ VA      T   V+VK+LGG L IEW  + N VFMTG AK  ++G
Sbjct: 230 ATAVACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDG 277


>gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
 gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
          Length = 290

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 41/301 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++    D +T    D ++LI   + A +  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPLK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      ++ ++F  ET+ G++ A+    +    S+
Sbjct: 63  -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPH 166
           +VDMGEP L+   IP+             +GP     +  PF           VSMGNPH
Sbjct: 122 TVDMGEPRLERSAIPM-------------VGPKAERVVAEPFTIAGGEYEMTAVSMGNPH 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            IF+V DD+    + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG
Sbjct: 169 VIFYV-DDIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACG 227

Query: 227 SAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           + ACA+VVAS    KT R     V + GG L I W  +  V MTG A+    G    + G
Sbjct: 228 TGACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGG 287

Query: 285 K 285
           +
Sbjct: 288 R 288


>gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
 gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
          Length = 280

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 277


>gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9]
 gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum
           SS9]
          Length = 276

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   +  AI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  +     +      T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I  V     R  F   VSMGNPH +  V DDL   D+
Sbjct: 123 PEFEPSKIP----FRAKQTEKTYIMRVGE---RTIFCGTVSMGNPHCVTVV-DDLELTDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 DTLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   ++MTG     ++G++
Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
 gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
          Length = 289

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVV 119

Query: 119 DMGEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P   S  D     R  + P++     R    VSMGNPHA+  V DD+ 
Sbjct: 120 DMGAPVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 239 IRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 287


>gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
 gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
          Length = 279

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 38/293 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           FAKM G GN  + ++   C +    D         N +F    D ++LI   + A  D  
Sbjct: 3   FAKMHGAGNDYVYVN---CFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRDG--SI 116
           +R+ N DGSE + CGNG+RCV ++      +++K  T ET  GIL  +    +RD    +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERV 117

Query: 117 SVDMGEPILDWKLIPLARSFDK---------MDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            V+MG+P L    IP+  S ++         +DR  FHI             VSMGNPH 
Sbjct: 118 RVNMGKPRLTRGEIPMTGSPEEQVINAELKVLDRT-FHIT-----------CVSMGNPHC 165

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I FV D++  + +A +G ++   PMF    N+    + S   +  RTWERG G T ACG+
Sbjct: 166 IIFV-DNVDEFPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGT 224

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + A  VA     +T R +   +LGG L +EW ++  V+MTG A + +EG  D
Sbjct: 225 GSSAVTVACVLNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFD 277


>gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
 gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
          Length = 276

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      ++T++ +  L+   + HF    DQI+L+    DAS D
Sbjct: 3   LKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLA---DRHFGVGCDQILLVEKAHDASAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC VRF+  +    +     ET  G++  +   DG + V+
Sbjct: 60  FRYRIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+ D   IP   S   ++  +  +     L +    +VSMGNPHA+  V DD+    
Sbjct: 120 MGAPVFDAARIPF--SGGTIEVMQPLVVADQTLMVS---IVSMGNPHAVQVV-DDVERAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+  H  F + VN    ++   + + LR +ERG G T +CG+ ACA+VV+    
Sbjct: 174 VEVLGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRR 233

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              +  VSV   GG L I W  +   V MTG A   + G++++
Sbjct: 234 GLLDSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276


>gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 263

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/268 (38%), Positives = 148/268 (55%), Gaps = 21/268 (7%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID R  ++       N     D +  DQ+++I      + D F+ I
Sbjct: 9   NFIKMHGTGNNFVIIDSRSTNN----LDWNHRQIADQSSCDQVIIIT--MSNAADCFMHI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS  + CGN  RCV   + S    +    E T + IL   +  D SI V+MG+P+L
Sbjct: 63  YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +     H+ P+    L++P  V++GNPH +FFV D++    L + G 
Sbjct: 123 KWHEIPLSTECDTL-----HL-PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKT 242
            L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS   G L   
Sbjct: 176 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSL--V 233

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
            +  SV + GG LLIEW +N  VFMTG+
Sbjct: 234 AQQTSVNLPGGKLLIEWANN--VFMTGD 259


>gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42]
 gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42]
          Length = 284

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 17/276 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + +   A+   S       D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D  I    +V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVAV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP L  K +P+  + D+   D   +     L   +   VSMGNPH +F V D +   
Sbjct: 124 DMGEPRLTKKELPMLGNEDERTIDETFVFGETEL---SGTAVSMGNPHIVFPVAD-INQA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236
            L + G ++ K P F EGVN+      S + L  R WERG G+T ACG+ ACA+ VAS  
Sbjct: 180 PLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASVL 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
             + + NR ++V + GG L+I W DN HV MTG A+
Sbjct: 240 NGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAE 275


>gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
 gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
          Length = 370

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 145/287 (50%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      ++T+  + AL+   N HF    DQ++L+       VD
Sbjct: 62  LKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALA---NRHFGVGADQLLLVEKPTVEGVD 118

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VD
Sbjct: 119 FRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIVD 178

Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ D +L+P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD   
Sbjct: 179 MGTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEA 237

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 238 FPVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAGI 297

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W        + M G A   +EG++++
Sbjct: 298 RRGLLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL 344


>gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
 gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
          Length = 280

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVD 61
           S + F+KM G+GN  +V+D    +   + + I  L+ D NT   FDQ++++    D  +D
Sbjct: 5   SYMQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLA-DRNTGIGFDQLLVVEAPYDPDLD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  I V+
Sbjct: 64  FHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVN 123

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MGEP  + + +P  A   +K     + I  V    L    VV+MGNPH +  VED +   
Sbjct: 124 MGEPDFEPQRVPFRANKAEKT----YIIRAVERTVLCG--VVAMGNPHCVIQVED-VNTA 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G  L  H  F E VN+   ++ +   + LR +ERG G T ACGS ACA+V     
Sbjct: 177 DVEVLGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQ 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  VSV + GG L I W      +FMTG A   ++G + +
Sbjct: 237 QDLLDNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280


>gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
 gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
          Length = 268

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    +G ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586]
 gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586]
          Length = 276

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G +V     +  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    
Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQI 274


>gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 287

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 145/289 (50%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + I+  G  + I S    A    D  HF    D ++LI     A+ D  
Sbjct: 7   FTKMQGIGNDYVYIN--GFQERIDSPGELARKISDR-HFGIGSDGLVLI--LPSATADVR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV +++       +   T ET  G+    L+ +  +    +
Sbjct: 62  MRMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGAT 121

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE--D 173
           VDMGEP L    IP L  +     + RF   PV+ +  L     VSMGNPHA+ F++  D
Sbjct: 122 VDMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKGID 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL   DL   G     HP+F +  N   A V S   + +R WERG G T ACG+ ACA  
Sbjct: 182 DL---DLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVA 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VA        R V V++ GG L I W + +NHV+MTG A   + G+  I
Sbjct: 239 VACVLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287


>gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
 gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
          Length = 372

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMR-GCHD-NITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           M+ F+K +G+GN  ++I+ R G  D +ITS     +    +  F    D I+L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +S++ ET  G+++     DG 
Sbjct: 61  G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P+L    +P   +  +    +  +  +N   L+    V MGNPH +  V D L
Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGELT-INGDLLKV-AAVGMGNPHVVVPVPD-L 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L   P F    N+   +V   ++LD+R WERG G T ACG+ ACA++VA
Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           +  L  +     V + GG L I W D    VFMTG A+  ++G
Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDG 279


>gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
          Length = 274

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 146/289 (50%), Gaps = 32/289 (11%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M     N    AI   +       D ++LI   + A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRDGS---- 115
           RI N DGSE   CGN  RC+ +++  +    +K+ T ET  GI    +      GS    
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSREEV 122

Query: 116 --ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++VDMG P++    + +           F+ G V          VSMGNPH + FVED
Sbjct: 123 IEVTVDMGCPVVGEAALEIEAG------GYFYTGTV----------VSMGNPHLVIFVED 166

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            + + +L + G LL  HP+F    N+   +V +++ + ++ WERG G+T ACG+ ACA+ 
Sbjct: 167 -IANINLPAIGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGACATA 225

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           VA     KT R   V M GG L I W +++ HV+MTG A K +EG+L+I
Sbjct: 226 VAGVIRRKTGRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274


>gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 280

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQISEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHAI FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEDETPFIRENFLYN--NHRYAFT--AVSMGNPHAIIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +   V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYEYK 277


>gi|255645761|gb|ACU23373.1| unknown [Glycine max]
          Length = 359

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 142/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +   S   A+     +     D ++ +    + +
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPGINGT 130

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N D SE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++
Sbjct: 131 -DYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEP+L    +P     +K D        V    + +   VSMGNPH + F  +   
Sbjct: 190 RVDMGEPVLKALDVPTKLPANK-DNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           +V A+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 305

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 144/308 (46%), Gaps = 39/308 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   + HF    DQI+ +       VD
Sbjct: 3   IRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLA---DRHFGVGADQILSVRAAPGPGVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC VR++  R    ++    +   G++   E  DG ++VD
Sbjct: 60  FEYVIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPF-------------------- 158
           MG P+ +   IP    FD         G    HL+   P                     
Sbjct: 120 MGAPVFELPRIP----FDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVN 175

Query: 159 --VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
             V+SMGNPHA+  V D +    +A  G L+  HP F + VN    ++    ++ LR +E
Sbjct: 176 VAVLSMGNPHAVQLVAD-VEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYE 234

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKE 274
           RGVG T ACG+ ACA+VVA   L   +  V V   GG L IEW   + + VFMTG A   
Sbjct: 235 RGVGETLACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTV 294

Query: 275 WEGKLDIK 282
           +EG+ +I 
Sbjct: 295 FEGETEIP 302


>gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 285

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 30/293 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61
           F KM GIGN  + ++   C +   S+         + HF    D ++LI   D  D  +D
Sbjct: 3   FTKMHGIGNDYVYVN---CFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIADCEMD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDG 114
            +    N DGS+   CGNG+RCV ++      + + S +  T  GI      + K+ +  
Sbjct: 60  MY----NLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVA 115

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVED 173
            + V+MG PIL  + IP+  + +++  +  H+ G   H+       VSMGNPHAI ++ D
Sbjct: 116 LVKVNMGAPILTSRQIPVVSTKEQVINEPLHVDGETYHIT-----AVSMGNPHAIVYM-D 169

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L + D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  
Sbjct: 170 ALKNLDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVA 229

Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
           VAS    L   ++ V+VK+LGG L I W+   N V+MTG A   ++G++D+ +
Sbjct: 230 VASTLNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSS 282


>gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
 gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
          Length = 284

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D  R   +N    +    +       D ++LI     A  D  +
Sbjct: 5   IKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE + CGN  RC+ ++L       +   T +T+ GI + K +  G    +++V
Sbjct: 63  RIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDTVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P  D  +    +    M      I  + +        VSMGNPH + FV +D+   
Sbjct: 123 DMGIP-SDEPVNYDGKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDITKV 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL+S G  L  HP+F +  N+  A+V     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 237 TGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 274

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ +I   + H  L    VVSMGNPH +  VE D+    + 
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V        
Sbjct: 174 TLGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V + GG L I+W    H +FMTG A   ++G
Sbjct: 234 LSANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDG 270


>gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
 gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
          Length = 368

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 33/294 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIH 53
           M+ F+K +G+GN  L+++ R           +A+S  D     +I           +++ 
Sbjct: 1   MLQFSKYQGLGNDFLIVEGR------QGQLPDAISNPDPAWVRRICDRRFGVGGDGLILA 54

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKE 110
               A  +  +RI+N DGSE + CGNG+RC+ R+L         + +  ET+ G++  + 
Sbjct: 55  LPAQADGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPEL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPH 166
             DG + VDMG P L  + IP       M  D     P   L L    +    V MGNPH
Sbjct: 115 MADGQLRVDMGPPFLSSEGIPTT----LMPEDGL---PQGVLLLEGEQLKVAAVGMGNPH 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +  V DDL      ++G  L  HP F    N+   +V + E L++R WERG G T ACG
Sbjct: 168 VVVPV-DDLASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACG 226

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           + ACA++VA+  L   +    V + GG L+IEW D    V MTG A+  ++G L
Sbjct: 227 TGACATLVAAVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVL 280


>gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 280

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FVED +    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFVED-VEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
 gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
          Length = 308

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      N+    I  L+  +    FDQ++LI       +D   
Sbjct: 32  IKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGIDFNY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F    +   +   T  T    +  + N D S+ V+MG 
Sbjct: 92  RIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVEMGI 151

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IPL+      +        + H        +S+GNPHA+  V+D +    + +
Sbjct: 152 PQLNPAAIPLSAEHQAAEYQL----ELQHGQTATMHAISVGNPHAVLLVKD-VETAPVPT 206

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ ++ HP F    N+   ++ + + + LR +ERG G T ACGS A A+V      H+ 
Sbjct: 207 LGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLYHRL 266

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ++ V+V + GG L+I+W D    + +TG A   +EG+L 
Sbjct: 267 DKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQLS 305


>gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 279

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 148/290 (51%), Gaps = 35/290 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++     + + S +  A    D  HF    D ++LI   + A  D  
Sbjct: 5   FTKMQGLGNDYVYVNC--LKEKVESPSEMARRVSDR-HFGVGSDGLILICPSECA--DFE 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +++ N DGS  + CGNG+RCV +++       +   + ET+ GI    L  +E +   + 
Sbjct: 60  MKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVK 119

Query: 118 VDMGEPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           VDMG PI   + IP+    D        +D D + +             VSMGNPHA+ +
Sbjct: 120 VDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM-----------TCVSMGNPHAVVY 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + DD+ + ++   G     HP F   VN   ARV   E++++R WERG G T ACG+ AC
Sbjct: 169 L-DDIQNMEIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGAC 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           A  VAS     T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 228 AVAVASMVNGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277


>gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 281

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 21/284 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K +G+GN  ++ID R   + + +  I     D   HF    D ++     Q A+ D
Sbjct: 3   IPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDR--HFGIGADGVIFALPGQ-AATD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI 116
             +RI N DGSE + CGNG+RC+ +F+ +R++      +++   T+ G ++ +   +  +
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAQFI-ARLEANNTIGRTYRIHTLAGTIIPRLEANEQV 118

Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +VDMG P L    IP  L +  +K+      +   + L       VSMGNPH + FV DD
Sbjct: 119 TVDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLIT----CVSMGNPHCVTFV-DD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    L + G     HP+F +  N+    V   + + +R WERG G+T ACG+ ACA VV
Sbjct: 174 LASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           A+    K +R  +V++ GG L I W D +N V+MTG AK  +EG
Sbjct: 234 AAVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277


>gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R]
          Length = 272

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 35/288 (12%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ +R         AI   +       D ++LI     A  D  +
Sbjct: 8   IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G    +++V
Sbjct: 66  RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P L+   I     F                    PF+   VSMGNPH + FV DD+
Sbjct: 126 DMGVP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 163

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 164 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 223

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 224 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 271


>gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
 gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
          Length = 285

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 146/288 (50%), Gaps = 21/288 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
            S + F K +G+GN  +++D R      +T +   AL    N  F    D ++ +   Q+
Sbjct: 2   PSRLSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALC---NRRFGVGADGVIFLLPGQE 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDG 114
            + D  +R+ N DGSE + CGNG+RC+ RFL       +  ++   T+ G +V +   DG
Sbjct: 59  GA-DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDG 117

Query: 115 SISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            ++VDMG P L    IP  LA+  +K+ R    +G            VSMGNPH + F+E
Sbjct: 118 LVTVDMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGREWAVT----AVSMGNPHCVVFLE 173

Query: 173 D--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +   L   DL   G L   HP F E  N   A+V     L LR WERG G+T ACG+ AC
Sbjct: 174 EGGSLEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGAC 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           A++VA+    +     +V++ GG L I W  D  HV+MTG A   + G
Sbjct: 234 AALVAAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSG 281


>gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
 gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
          Length = 269

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 35/288 (12%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ +R         AI   +       D ++LI     A  D  +
Sbjct: 5   IQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G    +++V
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P L+   I     F                    PF+   VSMGNPH + FV DD+
Sbjct: 123 DMGIP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
 gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
          Length = 284

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 149/290 (51%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +ML+     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLL--LPSAKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178
           P+ +   IP+A   D        I   P+N +  R   V  VSMGNPHAI F    +  +
Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G+L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  
Sbjct: 178 LLGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           L    + V +K+ GG L +EW  ++ V++TG+A+        I TG+W+K
Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280


>gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
 gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
          Length = 275

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 17/281 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  +VID    + +++ D        D      FDQ++++    ++  D   
Sbjct: 5   FTKMHGLGNDFIVID--AINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRY 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+      ++ +   ET  GI++     +G +SVDMG 
Sbjct: 62  RIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDMGI 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLA 181
           P  D   IP    F   +R   +   VN   +     VSMGNPHA+  V D DL    + 
Sbjct: 122 PRFDPARIP----FITQERALTYPLNVNDREIEIS-AVSMGNPHAVQIVPDIDLA--PVT 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VV+      
Sbjct: 175 SEGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRGL 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V V M GG L I W  ++  V+MTG A   +EG +D+
Sbjct: 235 LDSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275


>gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
 gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
          Length = 274

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +++D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  D + +P    F     ++ +I     H  L    VVSMGNPH +  V DD+    + 
Sbjct: 121 PNFDPQTVP----FRAAKAEKTYIMRAAEHTVLAG--VVSMGNPHCVLQV-DDVKTAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQEL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V++ GG L I W      +FMTG A   ++G
Sbjct: 234 LSEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDG 270


>gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
 gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
          Length = 323

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 148/293 (50%), Gaps = 24/293 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQ-----IMLIHDFQDAS 59
           ++FAK EG+GN  ++ID R      +T +    L    N +F       I  +   QD  
Sbjct: 39  IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLC---NRNFGVGGDGVIFALKAPQD-- 93

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118
            D  +RI N DGSE + CGNG+RC  +FL    +  KS+   T+ G +V + N D +I+V
Sbjct: 94  YDFTMRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNPD-TITV 152

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPILD   +P   + +       ++ H+      +  +   VSMGNPHAI FV+D  
Sbjct: 153 DMGEPILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKIS--AVSMGNPHAIIFVDDLE 210

Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              D A  G  L      F    N+   +V S   L ++ WERG G T ACG+  CA VV
Sbjct: 211 KDIDFAVDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVV 270

Query: 235 ASGCLHKTNRA----VSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           A+   +K  R     V V + GG L IEW  +NN ++MTG A   ++G   +K
Sbjct: 271 AAIRANKIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGTALLK 323


>gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
 gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
          Length = 288

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE ++CGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++
Sbjct: 62  K--MRMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV D
Sbjct: 120 LVKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
 gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
          Length = 277

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 23/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  + ++   C      +   A     + HF    D +++I   + A  D  
Sbjct: 3   FTKMHGLGNDYVYVN---CFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       + + + ET+ G+    L  K+ +   I 
Sbjct: 58  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG P L  + IP+    D +  +   + G +  +       VSMGNPHA+ FV DD+ 
Sbjct: 118 VDMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMT-----GVSMGNPHAVIFV-DDVK 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +L + G     H  F + VN   ARV   E++++R WERG G T ACG+ ACA  VA 
Sbjct: 172 GLELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVAC 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                T   V+V++LGG LLIEW  + + V+MTG A   ++G++ I
Sbjct: 232 ILNGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277


>gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
 gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
          Length = 300

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      N+T + + AL+   + HF    DQ++L+       VD
Sbjct: 16  LKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALA---DRHFGVGADQLLLVEKPTVDGVD 72

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  +    ++S   +   G +      +G + VD
Sbjct: 73  FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLVD 132

Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ + + +P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD+  
Sbjct: 133 MGSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 191

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 192 FPVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGI 251

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W  N     + M G A   ++G++++
Sbjct: 252 RRGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIEL 298


>gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
 gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
          Length = 280

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
 gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
          Length = 280

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 149/288 (51%), Gaps = 18/288 (6%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI   +    D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDM     D  L+  +R  +  D         V+    +  FV  MGNPH + F+ DD
Sbjct: 120 VTVDM-----DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + + +L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ V
Sbjct: 173 IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           A+   HK  R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 233 AAYLNHKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
 gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
          Length = 279

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 149/282 (52%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ FAKM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFAKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVN 118

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P+LD   IP  A+  +K    +         FL     +SMGNPH +  VE D+ H 
Sbjct: 119 MGVPVLDPSKIPFNAKRVEKTYLLQTSSSHAMETFLCG--AISMGNPHCVLEVE-DIEHA 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G LL ++  F +GVN+   +V     + LR +ERG   T ACG+ ACA+      
Sbjct: 176 EVERIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             K N+ V V + GG L I W  + N ++MTG A+  ++G++
Sbjct: 236 QGKLNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277


>gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 268

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    +G ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
 gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
          Length = 268

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    DG ++   +DMG P L    IP L  S     R+ F     NH +      
Sbjct: 86  IVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + + ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
 gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
          Length = 284

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 152/288 (52%), Gaps = 41/288 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M    + I    ++ L+   ++ NT    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVNM--FEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSIS-- 117
            +RI N DGSE ++CGNG+RCV +++     +  +SF  ET+ G++ A+ E  +G+++  
Sbjct: 63  -MRIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNV 121

Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGNPH 166
            +DMG+P L    IP+             +GP     +  PF           VSMGNPH
Sbjct: 122 TIDMGKPRLKRSEIPM-------------VGPEAERVVAEPFEVDGQLYEITAVSMGNPH 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            IF+V DD+    + S G ++ K   F EGVN+    V +   L  R WERG G+T ACG
Sbjct: 169 VIFYV-DDINQAAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACG 227

Query: 227 SAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           + ACA+VVAS    KT  N+   V + GG L I W D  +V MTG A+
Sbjct: 228 TGACAAVVASVLNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAE 275


>gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 289

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 140/290 (48%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+       V
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGV 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P  A   D        + P++     R    V+MGNPHA+  V DD  
Sbjct: 120 DMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A 
Sbjct: 179 AYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
                 +  V+V   GG L I W     +   + M G A   +EG++D+ 
Sbjct: 239 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLP 288


>gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
 gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
          Length = 276

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 137/285 (48%), Gaps = 24/285 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  ++ID       IT +    L+   + HF    DQ++++    +   D  
Sbjct: 5   FTKMHGLGNDFVMIDAISQKVTITPERARKLA---DRHFGVGCDQVLVVESPDNPDADFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC   F+  R    +     ET  G+L      D  ++V+MG
Sbjct: 62  YRIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P+L    IP             H  P   L L N  +    VSMGNPHA+  V D+L  
Sbjct: 122 VPVLAPAQIPFVTP---------HEQPEYPLQLDNMEITISAVSMGNPHAVTLV-DNLAS 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + + + G  +  H  F   VN     + S + + LR +ERGVG T ACG+ ACA+VV+  
Sbjct: 172 FPVKTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGI 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                +  V+V + GG L I W      V MTG AK  + G++ +
Sbjct: 232 VRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276


>gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 309

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 140/290 (48%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++L+       V
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGV 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 80  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 139

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+     +P  A   D        + P++     R    V+MGNPHA+  V DD  
Sbjct: 140 DMGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAE 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A 
Sbjct: 199 AYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAG 258

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
                 +  V+V   GG L I W     +   + M G A   +EG++D+ 
Sbjct: 259 IRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLP 308


>gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293]
 gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293]
          Length = 268

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    +G ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
 gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
          Length = 268

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    +G ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 278

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 10/278 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D 
Sbjct: 3   QMMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+M
Sbjct: 63  HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  D   +P     +K ++          +      VVSMGNPH +  V DD+    +
Sbjct: 123 GEPNFDPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVQTAAV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V       
Sbjct: 177 ETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQG 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                V V++ GG L I W    H ++MTG A   ++G
Sbjct: 237 LLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDG 274


>gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
 gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
          Length = 276

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 142/286 (49%), Gaps = 22/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID      ++T + I  L        FDQ++L+   ++A  D   
Sbjct: 3   LKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  +F+  +    +     ET RG++  +   DG   VDMG 
Sbjct: 63  RIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDMGV 122

Query: 123 PILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P      +P      A ++   +   R  IG           + SMGNPHA+  V DD+ 
Sbjct: 123 PRFRPADLPFLADAEALTYSLPLPEGRCEIG-----------IASMGNPHAVQRV-DDVD 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G  +  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VV  
Sbjct: 171 AAPVAEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCG 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG ++IEW  + + V MTG A   ++G++++
Sbjct: 231 IRQGLLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276


>gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora]
 gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora]
          Length = 376

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 147/289 (50%), Gaps = 22/289 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALSTDDNTHF----DQIMLIHDF 55
           M+ F+K  G+GN  L+ID R    N        + +  L    + HF    D +++I   
Sbjct: 1   MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLC---DRHFGVGADGVIIILS- 56

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENR 112
                D  +RI N DG+E Q CGNG+RC+ +FL      M    +  ET+ GI+V++   
Sbjct: 57  PTLEGDWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKE 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFV 171
           +  I VDMG PIL    IP   S   + +D   IG +  +    +     MGNPH +  V
Sbjct: 117 NDMIYVDMGIPILSPHDIPTRLS---VGQDNIAIGLIETNGITWSVAAAGMGNPHIVIPV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D     D+  FG LL +H  F    N+   +V     L LRTWERGVG+T ACG+ ACA
Sbjct: 174 KD-AEDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +++ +  L  +++   + + GG LL+ W   +NH+ + G AK  ++G L
Sbjct: 233 ALIVAHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVL 281


>gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 276

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 144/284 (50%), Gaps = 26/284 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + D I  L+ D NT   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFVVVDCITQNVFFSPDLIRRLA-DRNTGIGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DG EV+ CGNG RC  RF+  RMK    +   +  T +G ++     D  ++V+MG
Sbjct: 64  IFNSDGGEVEQCGNGARCFARFV--RMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F    R++ +I       LF      VS+GNPH +  VE+ L    
Sbjct: 122 VPEFEPSKIP----FKAKQREKTYILRAQDKTLFCG---AVSLGNPHVVTVVEE-LSDAL 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236
           +   G +L  H  F E VN    +V S   + LR +ERG G T ACG+ ACA+V   +A 
Sbjct: 174 IDEIGPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQ 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           G L   +  V+V + GG L I W  D   ++MTG A   ++G+L
Sbjct: 234 GLL---DENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQL 274


>gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
 gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
          Length = 300

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   + HF    DQI+ +       +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLA---DRHFGVGADQILTVRPSPAEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC +RF+       +     +T+ G++  +   DG ++VD
Sbjct: 60  FQYVIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVD 119

Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG PI +   +P       A+     ++    +G      + +  V+SMGNPHA+  V D
Sbjct: 120 MGAPIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVV-D 178

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           ++    +A  G  +  HP F + VN    +V     + LR +ERG G T ACG+ ACA+V
Sbjct: 179 NVDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAV 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           VA   L      V V+  GG L IEW  +   V MTG A   +EG +D+ 
Sbjct: 239 VAGIRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288


>gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
 gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
          Length = 278

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 140/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  +SV+MG
Sbjct: 64  YRIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  + + IP    F  +  ++ +I     H  L    VVSMGNPH +  V DD+   ++
Sbjct: 124 EPNFEPQAIP----FKAIKAEKTYILRAAEHTVLCG--VVSMGNPHCVLQV-DDVSAANV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V       
Sbjct: 177 ELLGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQA 236

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
             +  V V++ GG L I W      ++MTG A   ++G
Sbjct: 237 LLDEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDG 274


>gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis]
          Length = 303

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 144/293 (49%), Gaps = 19/293 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           ++ V FAK +G+GN  +++D R   + + +        D N     D ++     ++ + 
Sbjct: 16  AAAVKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSENGT- 74

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE---TIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC+ RF+    + +    +   T+ G++      DG + 
Sbjct: 75  DYSMRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVC 134

Query: 118 VDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           VDMGEPIL    +P      + +   + +  +     L       VSMGNPHAI F   D
Sbjct: 135 VDMGEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKEWLMT----CVSMGNPHAITFGLAD 190

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +   DL   G     +P+F    N     V S   + +  WERG G T ACG+ A
Sbjct: 191 GSSIKVDSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGA 250

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA+VVA      T+R+  V + GG L IEW + +NH++MTG A+  + G +D+
Sbjct: 251 CATVVAGVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303


>gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573]
 gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573]
          Length = 276

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 141/281 (50%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + +    T +G +V     +  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    
Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 274


>gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
 gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
          Length = 285

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 24/293 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  + ++   C +    +         + HF    D ++ IH    
Sbjct: 4   RSDSMKFTKMHGCGNDYVYVN---CFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDK 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111
           A  D  + + N DG+E   CGNG+RC+ +++       + + T ET  GI    L  ++ 
Sbjct: 61  A--DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDG 118

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +   ++VDM  P+L+   IP+    +K   D+  I       +     VSMGNPH + FV
Sbjct: 119 KVTWVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGREYRIT---CVSMGNPHGVVFV 175

Query: 172 E--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  DDL   D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ A
Sbjct: 176 DSVDDL---DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGA 232

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           CAS  AS    KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 233 CASAYASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285


>gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341]
 gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341]
          Length = 276

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 141/281 (50%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + +    T +G +V     +  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I  V    LF      VSMGNPH +  VED +    
Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVVED-IRTAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 234 GLLDEQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQI 274


>gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
 gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
          Length = 274

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 155/287 (54%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VI+     +N+    +     D   HF    D ++++        D  
Sbjct: 3   FTKMHGLGNDFIVIE---ALENVDYSELAVKLCD--RHFGIGADGLLVVE--PSGIADIR 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117
           +RI N DGSE + CGNG RC  +++  R  +K++  T ET+ G+++     K  +  S+ 
Sbjct: 56  MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVK 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174
           V MG PI +   IP+     K D+ +F   PV     ++      + +G PH I FVE  
Sbjct: 116 VYMGNPIFETSKIPI-----KTDKQKFINEPVKIDGKVYKLTS--IRVGVPHTIVFVES- 167

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    +   G+ + K  +FS+G N+   +V   E++ +RTWERGVGLT ACGS ACAS V
Sbjct: 168 LDENMIKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAV 227

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS  L KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 228 ASAVLGKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 274

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  +VI+ R   D  +  AI           D ++++        D  +RI 
Sbjct: 3   FTKMHGLGNDFIVIEARENVD-YSELAIKLCDRHFGIGADGLLVVE--PSGIADIRMRIF 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMG 121
           N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +   EN +  S+ V MG
Sbjct: 60  NADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            PI +   IP+     K D+ +F   PV     +     + +G PH I FV+  L    +
Sbjct: 120 SPIFEANKIPV-----KTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKS-LDENMI 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L 
Sbjct: 174 KELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           KT R V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 234 KTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274


>gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
 gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
          Length = 274

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 140/278 (50%), Gaps = 14/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDM 120
           RI N DGSEV  CGNG RC  RF+  RMK    ++     T  G +V     D S+ V+M
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFV--RMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  D + + L R+  ++++          +      VVSMGNPH +  V D + +  +
Sbjct: 119 GEPNFDPQQV-LFRA-ARVEKTYIMRAAEQTVLCG---VVSMGNPHCVIAV-DSVDNAPV 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G +L  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V       
Sbjct: 173 ATLGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +    V V++ GG L I W    H ++MTG A   ++G
Sbjct: 233 QLAEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDG 270


>gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
 gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
          Length = 275

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDGS+ V+
Sbjct: 59  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+ D   IP      K+++      PV          +SMGNPH +  V DD+    
Sbjct: 119 MGVPVTDPSNIPFKAK--KVEKTYLLQTPVQTFLCG---AISMGNPHCVIEV-DDIDTVA 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  FS+GVN+   ++ +   + LR +ERG G T ACG+ ACA+       
Sbjct: 173 VDEIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K +R V V + GG L I+W  +   ++MTG A+  ++G++ +
Sbjct: 233 DKLSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275


>gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
 gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
          Length = 276

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 22/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F KM+G+GN  +VID      ++T+  +  ++        DQ++L+       VD   
Sbjct: 3   VAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    ++    +T  G++      D  ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDMGV 122

Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P      IP     +      + D+ R  IG            VSMGNPH +  V   + 
Sbjct: 123 PRFAPDEIPFKADHEADSYLLEFDKQRVEIG-----------AVSMGNPHCVLRVAA-ID 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A +G +L +HP F + VN+    V S   + LR +ERG G T ACG+ ACA++V  
Sbjct: 171 AAPIACWGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMVIG 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V + GG L I W  +   V+MTG A+  +EG +++
Sbjct: 231 RRRGWLSEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276


>gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
 gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
          Length = 290

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 139/277 (50%), Gaps = 8/277 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  +V+D      N+ S+ I A++        DQ++L+ +      D   RI N 
Sbjct: 1   MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL-- 125
           DGSEV++CGNG RC V+F+  +    R     E   G +    N D +++VDMG P    
Sbjct: 61  DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120

Query: 126 -DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D        SF   ++ +    P+++  +    +VSM NPHA+  V D +Y   ++S G
Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIVPD-VYTAPVSSQG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F+  +N    ++ S   ++LR +ERG G T ACG+ ACA+VV+         
Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V V M GG + I + D   V M G A   +EG +DI
Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDI 275


>gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603]
 gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603]
          Length = 280

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 23/286 (8%)

Query: 11  MEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M     R     I ++ ++ ++T      D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGA--DGMILICPSDVAPVK--MR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVD 119
           + N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    +++     +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKID 116

Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L  + IP L        R+ F     NH +      VSMGNPHA+ FV DD+   
Sbjct: 117 MGAPRLTREEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 232 NGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 277


>gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
 gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
          Length = 278

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 146/291 (50%), Gaps = 38/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F+KM G+GN  +VID RG             CH +I   A            D ++L+ +
Sbjct: 3   FSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGA------------DGLLLVLN 50

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----V 107
              A  D  +RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+     V
Sbjct: 51  SDIA--DIRMRIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFV 108

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            +      + V+MG+P    K IP+    +    +   +   N   + +   + MG PH 
Sbjct: 109 NEYGLVDKVKVNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRITS---LLMGVPHT 165

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I FV DD+   D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+
Sbjct: 166 ILFV-DDVEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGT 224

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +CASV+AS     T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 225 GSCASVIASNLNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGE 275


>gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208]
          Length = 284

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 144/277 (51%), Gaps = 19/277 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + +   A+   S       D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D  I    +V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVAV 123

Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L  K +P L    ++   + F  G        +   VSMGNPH +F V D +  
Sbjct: 124 DMGEPRLTKKELPMLGNEEERTINETFVFGETE----LSGTAVSMGNPHIVFPVAD-ISQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
              + + NR ++V + GG L+I W DN HV MTG A+
Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAE 275


>gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
 gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
          Length = 276

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVD 61
           ++ F+KM G+GN  +V+D  G    +  +A       D      FDQ++L+    D  +D
Sbjct: 2   LIQFSKMHGLGNDFVVVD--GVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEVQ CGNG RC  RF  L     +      T+ G +V +   +  ++V+
Sbjct: 60  FHYRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IP    F  +  ++ ++  V    +    VVSMGNPH +  V   +    
Sbjct: 120 MGVPEFEPAKIP----FRALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEVPS-VKDAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  L     F E +N+    V S   ++LR +ERG G T ACG+ ACA+VV     
Sbjct: 174 VETLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K    V V + GG L I W+   + V+MTG A+  ++G++++
Sbjct: 234 EKLKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276


>gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 268

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    +G ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603]
 gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603]
          Length = 276

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + +    T +G +V     +  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I       LF      VSMGNPH +  V DD+    
Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRTAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQI 274


>gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
 gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
          Length = 280

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
 gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
          Length = 289

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 29/282 (10%)

Query: 8   FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVD 61
           F KM G+GN  + ++M + C   +T + ++ ++    N H     D ++LI     A V 
Sbjct: 11  FTKMHGLGNSYIYVNMFKEC---LTEEELSYIAKRVSNVHTGIGSDGLILICPSDVAPVK 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115
             +RI N DGSE ++CGNG+RCV ++      ++ + F  ET+ G++ A+    + +  S
Sbjct: 68  --MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFVEDGKVNS 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVE 172
           + ++MG+P L    IP+    D +        P+    H +      VSMGNPHA+F+V 
Sbjct: 126 VEINMGKPRLSRVEIPMIGKEDDIVVSE----PIEFEGHTYYMTG--VSMGNPHAVFYV- 178

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +    + S G ++ K   F EG+N+    V +   L  R WERG G+T ACG+ ACA+
Sbjct: 179 DQIEDAPVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGTGACAA 238

Query: 233 VVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           VVAS    KT  N    V + GG L I W +N  V M G A+
Sbjct: 239 VVASVLNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAE 280


>gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72]
 gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72]
          Length = 277

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 136/288 (47%), Gaps = 24/288 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G+GN  +VID      ++T   + A++   + HF    DQ++++       VD
Sbjct: 3   IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIA---DRHFGVGCDQLLVVEPPGSDEVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++      DG +SVD
Sbjct: 60  FRYRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175
           MG P L    IP     D           V  L L    V    VSMGNPHA+  V D +
Sbjct: 120 MGVPELSPARIPFVSDSDAW---------VQPLQLAEDTVAITAVSMGNPHAVQVVAD-V 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A  G  +  HP F   VN    +V     + LR +ERG G T ACG+ ACA+VVA
Sbjct: 170 DTAPVARQGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVA 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                     V V+  GG L I W      V MTG A   +EG+L++ 
Sbjct: 230 GIGRGLLVSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277


>gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ]
 gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ]
          Length = 278

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 32/291 (10%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  + +D  +   DN    AI   + +     D ++LI     A  D  +R+
Sbjct: 3   FTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRMRM 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVD 119
            N DGSE + CGNG+RCV ++      + +   T ET  GIL  +     EN+   + V+
Sbjct: 61  FNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVRVN 120

Query: 120 MGEPILDWKLIPL---------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           MG P L  + IP+         A     +D+  F I             VSMGNPH I +
Sbjct: 121 MGPPRLSREEIPMNGTPAAQVVAEELTVLDKT-FKI-----------TCVSMGNPHCIIY 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+ ++ +A++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A 
Sbjct: 169 V-DDVDNFPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGAS 227

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A  VA    + T+R +   + GG L +EW +N  VFMTG A + + G++ +
Sbjct: 228 AVCVAGVLNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278


>gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
 gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
          Length = 305

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 29/300 (9%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  + +D  +   DN +  AI+          D ++LI +   A  D F+ +
Sbjct: 9   FTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA--DFFMEM 66

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG--ILVAKENRDGSIS---VD 119
            N DGS+ Q CGNG+RCV +F+       + + T +T+ G  IL  K   DG +    V+
Sbjct: 67  YNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETARVN 126

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---------------VSMGN 164
           MG PIL+   IP+     K +     I  +    ++ P V               VSMGN
Sbjct: 127 MGAPILEAAQIPVDTKGLK-EYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTAVSMGN 185

Query: 165 PHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PHAI +++ D+    +++   G     H  F E +N    +V    +L++R WERG G T
Sbjct: 186 PHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWERGSGET 245

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            ACG+ ACAS+VA+      +   ++ +LGG L I W  D N V++ G AK  + G++DI
Sbjct: 246 LACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVDI 305


>gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
 gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
          Length = 276

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 142/281 (50%), Gaps = 15/281 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      N T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  VRF+T +    +++   ET+ GI+  +   +G I+VDMG PIL+ 
Sbjct: 61  DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120

Query: 128 KLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLA 181
           + +P    FD  D          + P++     N   VVSMGNPHA+  V D +    + 
Sbjct: 121 EDVP----FDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVAD-VEEAPVR 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VVA      
Sbjct: 176 EDGVLIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V+  GG L+I W   ++ V MTG A   +EG+++I
Sbjct: 236 LVSPVKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276


>gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241]
 gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241]
          Length = 239

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 14/228 (6%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117
           +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   
Sbjct: 14  MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAK 73

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+ 
Sbjct: 74  IDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVE 128

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS
Sbjct: 129 QAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVAS 188

Query: 237 GCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 189 ILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 236


>gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
 gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
          Length = 261

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 11/236 (4%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103
           FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF  L     ++  +  T  
Sbjct: 29  FDQMLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDISVSTQT 88

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSM 162
           G ++   N D ++ V+MGEP  D + +P    F     ++ +I     H  L    VVSM
Sbjct: 89  GRMILSVNEDETVCVNMGEPNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG--VVSM 142

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPH +  V DD+   ++A  G +L  H  F E  N+   +V S E + LR +ERG G T
Sbjct: 143 GNPHCVMQV-DDVSVANVALLGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGET 201

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            ACGS ACA+V            V V++ GG L I W    H ++MTG A   ++G
Sbjct: 202 QACGSGACAAVAVGIQQELLGEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDG 257


>gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
 gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
          Length = 269

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 35/288 (12%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ +R         AI   +       D ++LI     A  D  +
Sbjct: 5   IQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G    +++V
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P L+   I     F                    PF+   VSMGNPH + FV DD+
Sbjct: 123 DMGVP-LETGTIDFDGEF--------------------PFLSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++    ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RTVNLSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5]
          Length = 284

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 145/294 (49%), Gaps = 37/294 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++   C +    D         + HF    D ++LI   + A  D  
Sbjct: 3   FTKMHGIGNDYVYVN---CFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS+   CGNG+RCV +++     + + S +  T  GI    L  ++ +   + 
Sbjct: 58  MDMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           V+MG PIL  K IP+    +++       D   +H+             VSMGNPHAI +
Sbjct: 118 VNMGSPILTAKEIPVVAETEQVIDAPITVDGKEYHM-----------TAVSMGNPHAIIY 166

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+   DL   G     H  F + VN    +V    ++ +R WERG G T ACG+ AC
Sbjct: 167 V-DDVNSLDLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGAC 225

Query: 231 ASVVASGCLHKTN--RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A  VAS    K +  + V+V++LGG L I W  D N V+MTG A   ++G++D+
Sbjct: 226 AVTVASILNDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279


>gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1]
 gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1]
          Length = 239

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 14/228 (6%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117
           +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   
Sbjct: 14  MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAK 73

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+ 
Sbjct: 74  IDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVE 128

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS
Sbjct: 129 QAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVAS 188

Query: 237 GCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 189 ILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 236


>gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688]
 gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688]
          Length = 277

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM+GIGN  +VID      ++T D I A+S   + HF    DQ++++         
Sbjct: 4   LEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAIS---DRHFGVGCDQLLIVEHATTPEAA 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V+F+  +   +++    ET RG++  +   +G ++V+
Sbjct: 61  FRYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      +P    F+       +   + H  +    + SMGNPHA+  V D++    
Sbjct: 121 MGPP----SFLPADLPFEAETIQSLYPLQLAHETVEV-AIASMGNPHAVQLV-DNVDTAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  +  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+   L
Sbjct: 175 VAEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 V V   GG L I W   ++ V+MTG A   + G + +
Sbjct: 235 GHLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277


>gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
 gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
          Length = 276

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 16/279 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V        
Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            +  V V + GG L I W   +  ++MTG A   ++G++
Sbjct: 236 LDEQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQI 274


>gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
 gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
          Length = 289

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++++        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALA---DRHFGIGADQLLVVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+T R    ++S   + ++G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ +   +P  A   D        + P++     R    VSMGNPHA+  V DD  
Sbjct: 120 DMGAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y + + G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AYPVLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW---HDNNHVF-MTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W   HD      M G A   +EG++++
Sbjct: 239 IRRGLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287


>gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 268

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    DG ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FVED +    L + G +L  H MF E VN+    + + E ++ R WERG 
Sbjct: 142 VSMGNPHAVIFVED-VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
 gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
          Length = 280

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
 gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
          Length = 274

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 131/283 (46%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  D + +P            F      +L+L           VVSMGNPH +  V D +
Sbjct: 121 PNFDPQQVP------------FRANKAENLYLMRVAEQTIMCGVVSMGNPHCVLQV-DSV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G +L  H  F E VN+    V S E + LR +ERG G T ACGS ACA+V  
Sbjct: 168 KTAAVESLGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                     V V + GG L I W    H ++MTG A   ++G
Sbjct: 228 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDG 270


>gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
 gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
          Length = 276

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 141/290 (48%), Gaps = 28/290 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G GN  +V+D+      +    I  L+        DQ++++       VD  
Sbjct: 2   LLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+       ++  + ET  GI+  +   +  + VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDMG 121

Query: 122 EPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            PIL+ + IP      A S+  +++ +   IG            +SMGNPH++  V DD+
Sbjct: 122 APILEPQKIPFDAPEEATSYPLQVEENVLEIG-----------ALSMGNPHSVCRV-DDV 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV- 234
              ++   G L+  HP F +  N    ++ S   + LR +ERGVG T ACG+ ACA+VV 
Sbjct: 170 DSINIEHLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVY 229

Query: 235 --ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             + G L  T   V+V + GG L I W      V MTG     +EG + I
Sbjct: 230 GLSRGWLRDT---VTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276


>gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
 gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
          Length = 296

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 143/293 (48%), Gaps = 22/293 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   N HF    DQI+ +       VD
Sbjct: 7   IRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLA---NRHFGVGADQILTVRPAPSEGVD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC  R++  R    +     +T+ G++  + + +G ++VD
Sbjct: 64  FEYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRVTVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171
           MG P LD   +P   S + +  +         L L  P          VSMGNPHA+  V
Sbjct: 124 MGAPQLDPVKVPF--STEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQLV 181

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    +   G L+  H  F + VN    ++ +   ++LR +ERG G T ACG+ ACA
Sbjct: 182 -DDVNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGACA 240

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           +VVA       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293


>gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
 gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
          Length = 287

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      N++   + AL+   + HF    DQ++L+       VD
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALA---DRHFGVGADQLLLVEKPTVEGVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  +    ++S   +  +G +      +G + VD
Sbjct: 60  FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ + + +P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD+  
Sbjct: 120 MGAPVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W    ++  + M G A   ++G++++
Sbjct: 239 RRGLLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIEL 285


>gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
 gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
          Length = 290

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 14/285 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + S    F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 12  LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117
            D   RI N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+
Sbjct: 72  SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDL 175
           V+MG P  +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+
Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDI 183

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V  
Sbjct: 184 RTAAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAV 243

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                  +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 244 GILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288


>gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5]
          Length = 124

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 91/123 (73%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121

Query: 123 PIL 125
           P+ 
Sbjct: 122 PVF 124


>gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
 gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
          Length = 287

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 139/288 (48%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V++      N+T +    L+        DQI+L+    +  VD   
Sbjct: 3   LKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R   +F+T     ++     ET  GI+     +DGS++VDMG 
Sbjct: 63  RIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDMGN 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-------PF-VVSMGNPHAIFFVEDD 174
           P+ +   IP       +  D      + +L L         P  VVSMGNPHA+  V DD
Sbjct: 123 PVFETSRIPFLTK--GLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  H  F E VN     +    S+ LR +ERG   T ACG+ ACA+VV
Sbjct: 180 VNRAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +       +  V+VK  GG L I W    H V M+G A   + G++++
Sbjct: 240 SGIRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287


>gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
 gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
          Length = 282

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 149/282 (52%), Gaps = 9/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN  +VID    H +  +  I   +       FDQ++L+        + 
Sbjct: 2   AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +   + +     T +G++V     +G ++VDM
Sbjct: 62  GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L    IP + +  +     +H   ++    R    V+MGNPHA+  V DD++   +
Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASARFS-CVNMGNPHAVLVV-DDVHCAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---SG 237
           A +G  L +HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ VA   +G
Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L +   AV V + GG L IEW  +NHV M+G A   +EG +
Sbjct: 240 LLARQG-AVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTV 280


>gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
 gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
          Length = 276

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V        
Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 236 LDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274


>gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4]
          Length = 276

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V        
Sbjct: 176 TLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 236 LDEQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274


>gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073]
 gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1]
          Length = 275

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K+++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
          Length = 278

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 141/285 (49%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++   C      +         + HF    D ++LI   Q A  D  
Sbjct: 3   FTKMHGIGNDYVYVN---CFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS+   CGNG+RCV +++     + + +    T  GI    L  +  +   + 
Sbjct: 58  MDMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL+   IP+     +       +    + F      VSMGNPHA+ ++ DD+ +
Sbjct: 118 VNMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYL-DDVDN 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G    KHP+F + VN    +V   ++L +R WERG G T ACG+ ACA  V+S 
Sbjct: 173 LDIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             + T   V+VK+LGG L I W    N V+MTG A   ++G++ +
Sbjct: 233 LNNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITL 277


>gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
 gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
          Length = 282

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 17/284 (5%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR 65
           M G GN  +V+D        +T   + AL+   N HF    DQ++L+        D   R
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGADFKYR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P
Sbjct: 58  IFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAP 117

Query: 124 ILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     +P  A   D     R  + P++     R    VSMGNPHA+  V DD+  Y + 
Sbjct: 118 VFAPAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVL 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A      
Sbjct: 177 EEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
            +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 237 LDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 280


>gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385]
 gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385]
          Length = 290

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 10/283 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + S    F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 12  LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117
            D   RI N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+
Sbjct: 72  SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P  +   IP      K     + +    H        VSMGNPH +  V DD+  
Sbjct: 132 VNMGVPEFEPNKIPFRA---KQSEKTYILRAGEHTLFCG--AVSMGNPHVVTVV-DDIRT 185

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V    
Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288


>gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
 gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
          Length = 284

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 153/279 (54%), Gaps = 23/279 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M    + I    +++L+   ++ NT    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVNM--FEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116
            +RI N DGSE ++CGNG+RCV ++      +K +SF  ET+ G++ A+   +     ++
Sbjct: 63  -MRIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNV 121

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++DMG+P L    IP+     +++  + F +    +        VSMGNPH IF+V DD+
Sbjct: 122 TIDMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEIT----AVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 TTAPVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           S    KT  N+   V + GG L+I W D  +V MTG A+
Sbjct: 237 SVLNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAE 275


>gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 278

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 139/279 (49%), Gaps = 8/279 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN   V+D          + I  L   +    FDQ++++       +D  
Sbjct: 2   LLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N +GSEV+ CGNG RC  +F+  +    +     ET +G +      DG ++VDMG
Sbjct: 62  YRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +P   +  + D    ++     + L     VS+GNPHA+  V D L    ++
Sbjct: 122 APSFAPADLPFDATEKQDDLYTLNLEGYGSVELTP---VSVGNPHAVIRV-DRLTDEIVS 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G L+  H  F   VN+    V S + ++LR +ER VG T ACG+  CA++VA      
Sbjct: 178 TVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQGW 237

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            N  V+  +LGG L IEW  + + + MTG A K +EG++
Sbjct: 238 LNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQI 276


>gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
 gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
          Length = 278

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 143/287 (49%), Gaps = 24/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C +    +         + HF    D ++ IH    A  D  
Sbjct: 3   FTKMHGCGNDYVYVN---CFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DG+E   CGNG+RC+ +++       + + T ET  GI    L  ++ +   ++
Sbjct: 58  MAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVN 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDL 175
           VDM  P+L+   IP+    +K   D+  I       +     VSMGNPH + FV+  DDL
Sbjct: 118 VDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGREYRIT---CVSMGNPHGVVFVDSVDDL 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ ACAS  A
Sbjct: 175 ---DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYA 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           S    KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 232 SYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278


>gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
 gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
          Length = 276

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 140/281 (49%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLA-DRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + +    T +G +V     +  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I       LF      VSMGNPH +  V DD+    
Sbjct: 122 VPEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRTAA 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 234 GLLDEQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQI 274


>gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
 gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
          Length = 284

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 149/289 (51%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  ++++     D   S     L      HF    D ++++   +    D
Sbjct: 3   LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLC---RRHFSIGADGLIIVLPPESVEHD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---VAKENRDGS- 115
             +RI N DGSE + CGNG+RC   +L   +   R     ET+ GI+   +   N D S 
Sbjct: 60  FRMRIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSL 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG P    + IP+    D++D  +     + +  L N   VSMGNPH I FVED +
Sbjct: 120 IKVNMGRPHFKSEEIPVNIE-DELDYVKNFPLKIGNKKL-NINCVSMGNPHTIIFVED-V 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               ++++G  +  +P+F +  N+   ++ S + + +R WERG G+T ACG+ ACASVVA
Sbjct: 177 NQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                     V+V + GG L IEW + + VFMTG A+  + GK+ I+ G
Sbjct: 237 GIKNGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284


>gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555]
 gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016]
 gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555]
 gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 274

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 22/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +VID R   +              N HF    D ++++ +   AS+   
Sbjct: 3   FTKMHGTGNDFIVIDDR--ENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASIK-- 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++   + +K K    ET  GI    +  K  +   I+
Sbjct: 59  MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG P    + +P+    + ++++   I   N++       + MG PH + F    L  
Sbjct: 119 IDMGMPSFAPRKVPVEFKEEVIEKE-VKIKNKNYIIT----TLFMGVPHTVIF--GKLED 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+A  G  + K+P+F++G N++   + + + + ++TWERG G T ACG+ +CA VVA+ 
Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  T + V V + GG LL+E  D+N VFMTG A   ++G+ DI
Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274


>gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 277

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 148/286 (51%), Gaps = 24/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V++    +  +  D +     D   HF    D ++++        D  
Sbjct: 3   FTKMTGLGNDFIVLENLE-NKELEYDVLARKLCD--RHFGIGGDGLLIVE--PSGIADIK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RIIN DGSE + CGNG RC  +++     + +   + ET+ GI    L+ + +    + 
Sbjct: 58  MRIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDDL 175
           V MG PI    LIP+     K D+++F I     +  R   V S+  G PH + FV D +
Sbjct: 118 VYMGNPIFRPDLIPV-----KTDKNQF-IEETIKIDGRAYTVTSLLIGVPHTVIFV-DSI 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VA
Sbjct: 171 DENMIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVA 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S    +T R V V    G L IEW  +N++++TG+A+K + G +DI
Sbjct: 231 SALTDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276


>gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617]
          Length = 282

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + IP            F      +++L           VVSMGNPH +  V D++
Sbjct: 129 PNFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQV-DNV 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V  
Sbjct: 176 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                     V V + GG L I W    H +FMTG A   ++G
Sbjct: 236 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 278


>gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223]
 gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223]
          Length = 290

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   RI
Sbjct: 19  FSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 78

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + +    T +G +V     +  I+V+MG 
Sbjct: 79  FNADGSEVEQCGNGARCFARFV--RMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGV 136

Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I       LF      VSMGNPH +  V DD+    +
Sbjct: 137 PEFEPSKIP----FRAKQSEKTYILRAGEQTLFCG---AVSMGNPHVVTVV-DDIRAAAV 188

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V       
Sbjct: 189 ETLGPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQG 248

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W      ++MTG A   ++G++
Sbjct: 249 LLDEQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 288


>gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
 gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
          Length = 276

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I     N LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDNTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG     ++G+L
Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299]
 gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299]
          Length = 331

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 26/294 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV----DAF 63
           F K +G+GN  +++D R   +   S    A   D N       +I       V    D  
Sbjct: 44  FYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDYS 103

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +R+ N DG+E + CGNG+RC+  F+        K++   T+ G++  +   DG +SVDMG
Sbjct: 104 MRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDMG 163

Query: 122 EPILDWKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
           EP LD   +P   +F+        R +  +     L       VSMGNPH + F ++   
Sbjct: 164 EPTLDPPKVPC--TFEATQDGAAVRAKMEVDGETWLVT----AVSMGNPHCVTFGKEGEC 217

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +  + L+ +G +  KHP F    N     V +   + +  WERG G T ACG+ 
Sbjct: 218 DEEGIKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTG 277

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           ACA+VVA+    +T R  +V++ GG L IEW + +N V MTG A+  ++G + +
Sbjct: 278 ACATVVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331


>gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis]
          Length = 375

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 143/290 (49%), Gaps = 19/290 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDAS 59
           +  ++ F K  G+GN  +++D R   +   S   AI     +     D ++      + +
Sbjct: 87  KKDVLHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVNGT 146

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC+  F   L +  + +S+   T  G++V K   DG +
Sbjct: 147 -DYSMRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKV 205

Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            VDMG+PIL    IP     R    + +    +     +++     VSMGNPH + F   
Sbjct: 206 MVDMGQPILTAANIPTKLPKREDGAVVKAELPVD--GKIWIVT--CVSMGNPHCVTFSRK 261

Query: 174 DLYHYDLASF-----GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           D    D+ S      G L   H MF    N    ++ S   L +R WERG G T ACG+ 
Sbjct: 262 DCEVLDVNSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAG 321

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           ACA VVA+    ++ R   V + GG L IEW++ +NHV+MTG A+K + G
Sbjct: 322 ACALVVAAVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371


>gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
 gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
          Length = 278

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G+GN  +VID  G   ++  D        D  HF    DQI+L+    D +  
Sbjct: 3   LEFTKMHGLGNDFVVID--GTRQDVRLDEATLRQLADR-HFGIGCDQILLVEPPGDPTQA 59

Query: 62  AF-IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
            F  RI N DGSEV+ CGNG RC  RF+  +   + +    ET+ G +V     D  + V
Sbjct: 60  LFRYRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P+   + IPL    +    D + +    H        VSMGNPHA+  V DD+   
Sbjct: 120 NMGQPVFTPEQIPLVAEHEA---DAYTLDVQGHAITLG--AVSMGNPHAVLLV-DDVASA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F   VN+  A +     +DLR +ERGVG T ACGS A A++     
Sbjct: 174 PVTEVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRR 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDI 281
            +  +  V V + GG L++ W+      V++TG A   + G +D+
Sbjct: 234 RNLVDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278


>gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
 gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
          Length = 282

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 14/282 (4%)

Query: 8   FAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           F KM G+GN  +VID     +      + +D I  L   +    FDQ++++   + A  D
Sbjct: 5   FTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSADAD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI+N DGSEV  CGNG RC  RF+  +    ++    ET  G +      D  ++VD
Sbjct: 65  FRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVTVD 124

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      IP+     K + D + +  V+         V +GNPH    VE+ + +  
Sbjct: 125 MGAPRWAPDAIPMTA---KAEADSYFL--VSGTQAWEVGAVGLGNPHCTLLVEN-VDNAP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + S G LL  H  F E VN+   ++ S   + LR +ERG G T ACGS ACA+VV     
Sbjct: 179 VESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQRR 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + AV+V + GG L + +     + MTG A   ++G ++I
Sbjct: 239 GWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280


>gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 246

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 30/236 (12%)

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDG 114
            D  +RI N DGSE + CGNG+RC+  FL      SR K  ++   T+ G++  +   DG
Sbjct: 25  TDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNK-DTYRIHTLAGVITPQLTPDG 83

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF----------VVSMGN 164
            I VDMG P L    IP              +G  +   +  P            VSMGN
Sbjct: 84  QIKVDMGLPRLLAGEIPTT------------LGAADGKVINQPLEVEGQTWEVTCVSMGN 131

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH I FVED +    L   G     HP F +  N    +V S + L +R WERG G+T A
Sbjct: 132 PHCITFVED-VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLA 190

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CG+ ACAS+VA+    +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 191 CGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 246


>gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
 gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
          Length = 268

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+   +DG ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + + ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
 gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 141/293 (48%), Gaps = 22/293 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   N HF    DQI+ +       VD
Sbjct: 7   IRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLA---NRHFGVGADQILTVRPAPAEGVD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G ++VD
Sbjct: 64  FEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171
           MG P LD   +P     D +  +         L L  P          VSMGNPHA+  V
Sbjct: 124 MGAPQLDPAKVPFTN--DGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV 181

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ ACA
Sbjct: 182 -DDVDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGACA 240

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDIK 282
           +VVA       ++ V V   GG L IEW    H  V MTG A+  +EG++DI 
Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
 gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
          Length = 287

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 144/287 (50%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      N+T   + AL+   + HF    DQ++L+       VD
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALA---DRHFGVGADQLLLVEKPTVDGVD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  +    ++S   +  +G +      +G + VD
Sbjct: 60  FRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119

Query: 120 MGEPILDWKLIPLA-RSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ + + +P A +  +        + P++ +   R   VVSMGNPHA+  V DD+  
Sbjct: 120 MGLPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W  N     + M G A   ++G++++
Sbjct: 239 RRGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285


>gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
          Length = 289

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+  R      S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P   S  +  R   D     PVN    R   VVSMGNPHA+  V+D  
Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIVDDAK 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               LA  G  + +HP F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 179 AAPVLAD-GPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289


>gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44]
 gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44]
          Length = 296

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 142/293 (48%), Gaps = 22/293 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   N HF    DQI+ +       VD
Sbjct: 7   IRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLA---NRHFGVGADQILTVRPAPAEGVD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G ++VD
Sbjct: 64  FEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIFFV 171
           MG P LD   +P   + D +  +         L L  P          VSMGNPHA+  V
Sbjct: 124 MGAPQLDPAKVPF--TTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV 181

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ ACA
Sbjct: 182 -DDVDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGACA 240

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKLDIK 282
           +VVA       ++ V V   GG L IEW    H  V MTG A+  +EG++DI 
Sbjct: 241 AVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 268

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ G
Sbjct: 28  DGMILICPSDVAPVK--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAG 85

Query: 105 ILVAKEN-RDGSIS---VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+    DG ++   +DMG P L    IP L        R+ F     NH +      
Sbjct: 86  IVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--A 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + + + ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli]
 gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli]
          Length = 276

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 13/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
            +F KM  +GN  +++D        ++  I   +       FDQ++LI   +  S   + 
Sbjct: 3   TEFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQSKHFYY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123
           RI N +G+EV  CGNG  CV R+L  + + K+     T+   L       G ++ ++G P
Sbjct: 63  RIFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTANLGLP 122

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           I D + IP       ++  +  I P+   F R +  V+S+GNPH +  V + L    L  
Sbjct: 123 IFDPEKIPF------INPSKAPIHPLETPFGRFDCCVLSLGNPHCVIQV-NCLEKAPLED 175

Query: 183 FGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            G  L +HP   F +G NL + ++   + +DLR +ERGVG T ACGS ACA+V+A   L+
Sbjct: 176 LGLYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIAGRLLN 235

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           +  + V V + GG L + W  +++ VF+ G     + G +D
Sbjct: 236 RLTKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276


>gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3]
          Length = 284

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 145/276 (52%), Gaps = 17/276 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + +   A+   S       D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D  I    +V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVAV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP L  K +P+  + D+   +   +     L   +   VSMGNPH +F V D +   
Sbjct: 124 DMGEPRLTKKELPMLGNEDERTINETFVFGETEL---SGTAVSMGNPHIVFPVAD-ISQA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236
            L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS  
Sbjct: 180 PLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASVL 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
             + + NR ++V + GG L+I W DN HV MTG A+
Sbjct: 240 NGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAE 275


>gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163]
          Length = 274

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + IP            F      +++L           VVSMGNPH +  V D++
Sbjct: 121 PNFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQV-DNV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V  
Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                     V V + GG L I W    H +FMTG A   ++G
Sbjct: 228 GIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 270


>gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
 gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
          Length = 276

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I     N LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDNTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG     ++G+L
Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
 gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
          Length = 285

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 134/283 (47%), Gaps = 19/283 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M G GN  +V+D      + T +   A++   + HF    DQ++L+       VD   RI
Sbjct: 1   MHGAGNDFVVLDGIETPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFRYRI 57

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG P+
Sbjct: 58  FNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPV 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLYHYD 179
            +   +P     D +   R       H    N        VSMGNPHA+  V DD   + 
Sbjct: 118 FEAARLPFVP--DGLP-TRVEGADTQHALQINGRTEWLSTVSMGNPHAVQVV-DDAEAFP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA    
Sbjct: 174 VLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRR 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              +  V V   GG L I W  +   V MTG A   +EG LD+
Sbjct: 234 GLLDSPVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDL 276


>gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
 gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
          Length = 274

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     ++ +I  V    +    VVSMGNPH +  VE ++    + +
Sbjct: 121 PNFEPQQVP----FRAAKSEKTYILRVAERTVMC-GVVSMGNPHCVIQVE-NVDTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++ +  ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
              V+V++ GG L I W    N +FMTG A   ++G
Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDG 270


>gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676]
 gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676]
          Length = 280

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
 gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
          Length = 272

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 137/283 (48%), Gaps = 37/283 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDAS 59
           MV F KMEG GN  + ++     + +  + + AL+    + HF    D +++I    +  
Sbjct: 1   MVRFTKMEGAGNDYIYVN--NLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD---- 113
            D   R+ N DGSE + CGNGMRC  R+   R    R+    +T  G +V +   D    
Sbjct: 59  YDFRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGS 118

Query: 114 -GSISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              + VD+G P +  D ++    R +           PV         VV  G PH + F
Sbjct: 119 FAGVRVDLGPPRILGDRRIAAEGREY-----------PVT--------VVDTGVPHIVIF 159

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+   DLA  G  L +HP F   VN++ A       L  RTWERG GLT ACG+ A 
Sbjct: 160 V-DDVDAVDLAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGAS 218

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAK 272
           A +VA+    +T RA  V+M GG L +EW +   HVF+TG A+
Sbjct: 219 AVLVAACLKGRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAE 261


>gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 280

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
 gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
          Length = 290

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 8/236 (3%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
           +I+       D  +RI N DGSE + CGNG+RC  +F+ ++  + + SF+ ET  GIL  
Sbjct: 49  IIYVLPSLDADFKMRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFP 108

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHA 167
           +  ++G++ VDMG P L+   IP+     K+  D   +I   N  +  N   VSMGNPH 
Sbjct: 109 EILKNGNVCVDMGIPNLNSDDIPVKGFSKKVVIDELLNISHENTAYRIN--CVSMGNPHC 166

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + F  D +   ++ + G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+
Sbjct: 167 VIFT-DKIDSINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGT 225

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
            +CA+VVA+   +  N    V + GG L I W  +  NHVFMTG A+K ++G +++
Sbjct: 226 GSCAAVVAATLNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEV 281


>gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 274

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VI+     +N+    + A   D   HF    D ++++        D  
Sbjct: 3   FTKMHGLGNDFIVIE---ALENVDYSELAAKLCD--RHFGIGADGLLVVE--PSGIADIR 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117
           +RI N DGSE + CGNG RC  +++  R  +K++    ET+ G+++     K  +  S+ 
Sbjct: 56  MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVK 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174
           V MG PI +   IP+     K D+ +F   PV     ++      + +G PH I FVE  
Sbjct: 116 VYMGNPIFETSKIPI-----KTDKQKFINEPVKIDGKVYKLTS--IRVGVPHTIVFVES- 167

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    +   G+ + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS V
Sbjct: 168 LDENMIKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAV 227

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS  L KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 228 ASAVLGKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4]
          Length = 277

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +++    + + + A  ++   D  HF    D ++ I     A  D  
Sbjct: 3   FTKMHGCGNDYVYVNLF--EEKVENPAEVSIKVSDR-HFGIGSDGLITIGPSDKA--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSIS 117
           + I N DGSE + CGNG+RCV +++           T ET  G    IL  +  +   + 
Sbjct: 58  MHIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPI     IP+    DK+  +   +G        N   VSMGNPHA+ FV DD   
Sbjct: 118 VDMGEPIHTPAEIPVVADGDKVIDEPIEVGGKT----WNMTCVSMGNPHAVVFV-DDTAS 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L ++G L   H  F +  N    ++ S    ++R WERG   T ACG+  CA V+A  
Sbjct: 173 FPLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              KT   V V + GG L IE+  ++NHVFMTG A + + G++++
Sbjct: 233 LNGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277


>gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1]
          Length = 274

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      V  +       VSMGNPH +  V DD+   ++A 
Sbjct: 121 PIWEPNKIPF--TANKFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DDIETANVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274


>gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
 gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
          Length = 283

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/284 (36%), Positives = 141/284 (49%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K EG+GN  ++ID R   + + S    A   D   HF    D ++ +   +  + D
Sbjct: 8   LSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCD--RHFGVGADGVIFLLSAETGA-D 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             +RI N DGSE Q CGNG+RC+  F   L        +  ET  G+L      DG + V
Sbjct: 65  FRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRV 124

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P L    IP  LA +  K       +G V+         V+MGNPHA+ FV D+L 
Sbjct: 125 DMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVT----CVNMGNPHAVVFV-DELA 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG L  +   F E VN   A V S   L ++ WERG G T ACG+ ACA +VA+
Sbjct: 180 TVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAA 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                ++   +V++ GG + I W    NH+ MTG A+K + G L
Sbjct: 240 VLNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL 283


>gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017]
          Length = 275

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas
           arsenicoxydans]
          Length = 283

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 15/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +VID      + T      L+        DQ++++   Q A VD   
Sbjct: 3   IKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDMG 
Sbjct: 63  RIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGA 122

Query: 123 PILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           PIL  + +P      L ++          I    H       V+SMGNPHA+  V  D  
Sbjct: 123 PILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWI----SVLSMGNPHAVQVVA-DAD 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           H  +   G L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+ 
Sbjct: 178 HAPVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                    + V+  GG L I W  DN+ V +TG A   +EG++++
Sbjct: 238 IRRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283


>gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
 gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
          Length = 282

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 17/284 (5%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR 65
           M G GN  +V+D        +T   + AL+   N HF    DQ++L+        D   R
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALA---NRHFGIGADQLLLVEKPTVDGADFKYR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P
Sbjct: 58  IFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAP 117

Query: 124 ILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     +P  A   D     R  + P++     R    VSMGNPHA+  V DD+  Y + 
Sbjct: 118 VFAPAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVL 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A      
Sbjct: 177 EEGPLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
            +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 237 LDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDL 280


>gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 267

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 132/278 (47%), Gaps = 20/278 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASV 60
           ++ F KM   G+  ++ID RG  D IT+     L    N H    F+Q+ +++D ++A+ 
Sbjct: 2   LLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLG---NRHTGIGFNQLAVVYDCEEAA- 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A I   N +G+ + +CG+  R V   L     + S    T RG+L         +SVDM
Sbjct: 58  -ARISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L+W  +PL+ + D +        PV      +P   SMGNPH  FFV DD+   D+
Sbjct: 117 GEPSLEWTAVPLSDAMDTLTL------PVEG----SPAACSMGNPHCTFFV-DDIAAVDV 165

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  L  HP+F    N+   +V     + LR WERG G+    GS  C +VV      
Sbjct: 166 AGLGPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRG 225

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  V V+  GG + ++W     V +TG  +   +G 
Sbjct: 226 LLDATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGS 263


>gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
 gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
          Length = 298

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 139/301 (46%), Gaps = 38/301 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDA 58
           +Q   +DF K  G+GN  +++D R       S  DAI     +     D ++        
Sbjct: 7   LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQG 66

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RF   L   ++ +S+   T+ G ++ +   DG 
Sbjct: 67  -CDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV----------SMG 163
           ++VDMG P L    +P                PVN     ++ P VV          SMG
Sbjct: 126 VAVDMGPPTLKGAEVPTKL-------------PVNADGAVVKQPLVVDGKTWLVTCVSMG 172

Query: 164 NPHAIFFVEDD------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
           NPH + F E D      +    L   G L   H +F    N    +V S   L +R WER
Sbjct: 173 NPHCVTFGEQDAKGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWER 232

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWE 276
           G G T ACG+ ACA VVA+    +  R   V + GG L IEW + NNHV+MTG AK  + 
Sbjct: 233 GAGPTLACGTGACAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFS 292

Query: 277 G 277
           G
Sbjct: 293 G 293


>gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
 gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
          Length = 274

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L    VVSMGNPH +  V D++    +  
Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--VVSMGNPHCVLQV-DNVDTAPVEE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H +FMTG A   ++G
Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDG 270


>gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
 gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
          Length = 276

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 139/280 (49%), Gaps = 14/280 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+  +    FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DG+EV+ CGNG RC  RF+  RMK    R +    T +G +  K   D  I+V+MGE
Sbjct: 65  FNSDGTEVEQCGNGARCFARFV--RMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP   +  + ++          LF      VSMGNPH +  V DD+ +YD+  
Sbjct: 123 PQFEPNKIPFKAT--QAEKTYLLRAEDKTLFCG---AVSMGNPHCVT-VVDDVDNYDVDK 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G L+  H  F E VN     + S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 YGPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 237 EEDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
 gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
          Length = 280

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 151/285 (52%), Gaps = 26/285 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F KMEGIGN  + ID  G H ++  +  + ++   + HF    D +++I   Q++ +
Sbjct: 1   MLKFTKMEGIGNDYIYID--GIHQDVPMNP-HFITKISDRHFGIGSDGVIVI---QESEI 54

Query: 61  DAF-IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRD 113
             F +R+ N DGSE + CGNG+RC  +F+      K+     ET+ GI    L+   N+ 
Sbjct: 55  CDFKMRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKV 114

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + V+MG+PIL  K IP     ++M  +   + G V +L       +SMGNPH + ++ 
Sbjct: 115 QYVRVNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLT-----SLSMGNPHTVIYM- 168

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +   +++   G    KH +F E VN     V + + L +R WERG G T ACG+ ACA 
Sbjct: 169 -NHLDFNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAV 227

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           + AS      +  V V++LGG L I + +N  ++M+G A   +EG
Sbjct: 228 MYASYINGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEG 271


>gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206]
 gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3]
 gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206]
          Length = 275

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K+++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
 gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
          Length = 280

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 143/274 (52%), Gaps = 19/274 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           K  R   ++V + GG L+I W +  +V M G A+
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAE 267


>gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
 gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
          Length = 275

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTATVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271


>gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004]
 gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038]
 gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 274

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 142/277 (51%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  + + +P   +  K ++  + +    H  L    VVSMGNPH +  V DD+   ++A
Sbjct: 120 EPDFEPQTVPFRAA--KAEKT-YILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            N  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 234 LNENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDG 270


>gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
 gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
          Length = 286

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 141/281 (50%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           F K  G GN  ++ID R     +   S+ I  +    +  F    D ++ I +  + +  
Sbjct: 6   FEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILE-PNGNNH 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117
           A + I N DGSE Q CGNG+RC+V++L +  K       +  ET  G+ +A+ N DG IS
Sbjct: 65  ARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYN-DGQIS 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+PI+D K IP      +     F     N  F    + V MGNPH IFFVED +  
Sbjct: 124 VKMGKPIIDIKSIPTNIDKKQNFLPAFLFKESN--FEYEGYAVGMGNPHLIFFVED-ITK 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L+  G +   H +F E  N+  +++ + +++ +  WERG G T ACG+ ACA  VA+ 
Sbjct: 181 ISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVAAF 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            L   N    + + GG L I W      + M+G AKK + G
Sbjct: 241 NLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSG 281


>gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 274

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 144/283 (50%), Gaps = 18/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D+   +  ++   I  L+       FDQ++ +    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS------FTFETIRGILVAKENRDGSISV 118
           RI N DGSEV  CGNG RC+  F+  RMK+ +       + +T R +L   EN    + V
Sbjct: 61  RIFNADGSEVTQCGNGARCLAHFV--RMKKLTNKREIYISTQTSRMVLTIIENN--MVRV 116

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P  +   IP      ++++        N++F     +VS+GNPH I  V +++   
Sbjct: 117 NMGVPKFELPQIPF--DMHQIEKKEILYLAKNYIFGG---IVSIGNPHCIMIV-NNVDSA 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            ++  G +L  H  FSE  N+   +V + E + LR +ERGVG T ACGS ACA+V     
Sbjct: 171 QVSIIGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIR 230

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           L      V V + GG L+I W      ++MTG A   ++G ++
Sbjct: 231 LGLLAEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273


>gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905]
          Length = 274

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 277

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 144/290 (49%), Gaps = 26/290 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++   C   +  D +       + HF    D ++LI   + A  D  
Sbjct: 3   FTKMHGIGNDYVYVN---CFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--DCK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE Q CGNG+RCV +++   + +++   T ET+ GI    L  K  R  S  
Sbjct: 58  MRIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCSAR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L    IP+  +  ++  D   +   N  F      VSMGNPH + FV DDL  
Sbjct: 118 VNMGRPKLMRPEIPMVGAETQV-VDEMLVLNENTSFRVT--CVSMGNPHCVIFV-DDLKQ 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  +  H +F E  N+   +V     + + TWERG G+T ACG+ A A  VA  
Sbjct: 174 LHIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             + T R +   + GG L +EW ++ +V+MTG A        ++ TG+W+
Sbjct: 234 LNNLTERKLLAHLPGGDLELEWVEDENVYMTGAAA-------EVFTGEWL 276


>gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
          Length = 283

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 147/290 (50%), Gaps = 24/290 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           + ++ F KM G GN  + +D      G  + ++ +  +AL T   +  D ++LI   +  
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE-WSALHTGIGS--DGLVLIG--RSG 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
             D  +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L  ++N+
Sbjct: 57  KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNK 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
             +++VDMG P  +         +D  +       P+    +R     VSMGNPH + FV
Sbjct: 117 VDTVTVDMGIPACE------PTCYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV 170

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            +D+   DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA
Sbjct: 171 -NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACA 229

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           + VA+    ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 230 TAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 288

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 16/281 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           S + F KM+G+GN  +V D      ++  + +  ++   + HF    DQI+L+       
Sbjct: 2   SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIA---DRHFGIGCDQILLVEAAASPD 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSF-TFETIRGILVAKENRDGSIS 117
            D   RI N DG+EV  CGNG RC   F+  +++  K   T ET  G L+     +G+I+
Sbjct: 59  CDFRYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P    +L+P    F   +    ++       LR    V MGNPHA+  V      
Sbjct: 119 VHMGVP----RLVPADVPFRADEESPEYLLSAGKHTLRI-AAVGMGNPHAVLRVAS-AAE 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A+ G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA  
Sbjct: 173 APVATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              + + AV+V + GG L IEW    H V MTG A+  ++G
Sbjct: 233 RWDELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDG 273


>gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 277

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 147/290 (50%), Gaps = 35/290 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++     + + S +  A    D  HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGLGNDYVYVNCL--KEKVESPSEMARRVSDR-HFGVGSDGLILICPSECA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +++ N DGS  + CGNG+RCV +++       +   + ET+ GI    L  +E +   + 
Sbjct: 58  MKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVK 117

Query: 118 VDMGEPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           VDMG PI   + IP+    D        +D D + +             +SMGNPHA+ +
Sbjct: 118 VDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM-----------TCISMGNPHAVVY 166

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + DD+ + ++   G     HP F   VN   A V   E++++R WERG G T ACG+ AC
Sbjct: 167 L-DDIQNMEIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGAC 225

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           A  VAS     T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 226 AVAVASMVNGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275


>gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
 gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
          Length = 292

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 36/300 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +       +D
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLA---DRHFGVGADQILTVRPSPAEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC  R++  +    + +   +T+ G++  +   DG ++VD
Sbjct: 60  FEYVIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPF--------------VVSMGN 164
           MG P  D   +P          D   + PV   L  + P               VVSMGN
Sbjct: 120 MGRPEFDAARVPF---------DAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGN 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+  V+ D+    +A  G L+  HP F   VN    ++     + LR +ERG G T A
Sbjct: 171 PHAVQLVQ-DVDTAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLA 229

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282
           CG+ ACA+V A   L   +  V V+  GG L I W   + + VFMTG A   ++G++++ 
Sbjct: 230 CGTGACAAVAAGIRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289


>gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 297

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 16/281 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           S + F KM+G+GN  +V D      ++  + +  ++   + HF    DQI+L+       
Sbjct: 11  SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIA---DRHFGIGCDQILLVEAAASPD 67

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSF-TFETIRGILVAKENRDGSIS 117
            D   RI N DG+EV  CGNG RC   F+  +++  K   T ET  G L+     +G+I+
Sbjct: 68  CDFRYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNIT 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P    +L+P    F   +    ++       LR    V MGNPHA+  V      
Sbjct: 128 VHMGVP----RLVPADVPFRADEESPEYLLSAGKHTLRI-AAVGMGNPHAVLRVAS-AAE 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A+ G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA  
Sbjct: 182 APVATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGI 241

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              + + AV+V + GG L IEW    H V MTG A+  ++G
Sbjct: 242 RWDELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDG 282


>gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
 gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
          Length = 274

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + IP            F      +++L           VVSMGNPH +  V D++
Sbjct: 121 PNFEPQQIP------------FRANKAENIYLMRAAEQTVMCGVVSMGNPHCVLQV-DNV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V  
Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                     V V + GG L I W    H ++MTG A   ++G
Sbjct: 228 GIQQASLAEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDG 270


>gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895]
 gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895]
          Length = 275

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNIDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271


>gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
 gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
          Length = 276

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 144/281 (51%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVYFSQELIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G ++     D  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F    +++ +I  V    LF      VSMGNPH +  V DD+   +
Sbjct: 122 VPEFEPNKIP----FRAKQKEKTYIMRVGEKTLFCG---AVSMGNPHVVT-VVDDVDSAE 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V      
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 234 GLLDENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274


>gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 173

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 99/162 (61%)

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   
Sbjct: 2   VYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDT 61

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YDL   G LL  HP+F E  N+SIA+VT  +++ LR WERG GLT ACG+AACA+ VA+ 
Sbjct: 62  YDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAAS 121

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L    R+  + + GG L IEW  ++HV MTG    E EG  
Sbjct: 122 RLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSF 163


>gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 264

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 141/269 (52%), Gaps = 21/269 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G GN  ++ID R  ++       N     D    DQ+++I      + + F+ 
Sbjct: 9   IPFVKMHGTGNSFVIIDSRSANN----LDWNYRQIADQGSCDQVIIIT--MSNAANCFMH 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-ILVAKENRDGSISVDMGEPI 124
           I N DGS  + CGN  RCV   +      +  T E I   IL   +  D SI V+MG+P+
Sbjct: 63  IYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPL 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPL+   D +        P+    L+ P  V++GNPH +FFV D++    L + G
Sbjct: 123 LKWNEIPLSCECDPLYL------PIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHK 241
             L  H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS    CL  
Sbjct: 176 PKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCL-- 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
             +  SV + GG LLIEW  N  + MTG+
Sbjct: 234 ATKQTSVHLPGGHLLIEWSKN--ILMTGD 260


>gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 242

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 13/226 (5%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGI 105
           DQ+++I +   A  D F+ I N DGS+ + CGN  RCV   L S    +  T E + + I
Sbjct: 24  DQVIVITNSSLA--DCFMHIYNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRI 81

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           L   +  D SI V+MG+P+L W  IPL+      + D  H+ P+    L++P  V++GNP
Sbjct: 82  LECFKVGDKSIKVNMGKPLLKWHKIPLST-----ECDTLHL-PIELEMLKDPVAVNIGNP 135

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H +FFV D +    L S G  L  H +F + +N+SIA+V     + LR WERG G+TA+C
Sbjct: 136 HIVFFV-DSVNEIPLQSLGPKLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASC 194

Query: 226 GSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
           GSAACA++V S    + T +  SV + GG LLIEW +N  VFMTG+
Sbjct: 195 GSAACAALVTSTLRGYLTVQQTSVNLPGGKLLIEWANN--VFMTGD 238


>gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
 gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
          Length = 278

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/290 (36%), Positives = 148/290 (51%), Gaps = 30/290 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           + F+KM G+GN  +V+D  G   N+  S  +     D +T   FDQ++L+    D  +D 
Sbjct: 5   LQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             RI N DGSEV  CGNG RC  RF     LT++ K K  T ++ R  L   EN D  + 
Sbjct: 63  HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMTLTINENDD--VC 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDL 175
           V+MGEP  + + +P    F  +  ++ +I        R  F  VVSMGNPH +  V D++
Sbjct: 120 VNMGEPDFEPQNVP----FRAVKAEKTYIIRAQE---RTVFAGVVSMGNPHCVVQV-DNV 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233
              ++   G  L  H  F E  N+    V S + + LR +ERG G T ACGS ACA+V  
Sbjct: 172 QTAEVEVLGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAV 231

Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            V  G L   NR V V + GG L I W    + ++MTG A   ++G + I
Sbjct: 232 GVGQGLL--ANR-VRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278


>gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2]
 gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2]
          Length = 283

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 143/291 (49%), Gaps = 25/291 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KMEG+GN  +++D R       +    +               +I      + D  
Sbjct: 3   LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETADVG 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116
            +I N DGSE + CGNGMRC  + +  +  + ++ FT ET+ G     IL++   +  +I
Sbjct: 63  FKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVEAI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFV----VSMGNPHAIFFV 171
            VDMGEPIL+   IP      K +R R     VN  + ++   V    VSMGNPHA+ FV
Sbjct: 123 CVDMGEPILEPDRIPF-----KCNRQR----AVNEQIQVKGETVSITAVSMGNPHAVIFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+   DL + G  +  H +F    N+    V + + L +R WERG G T ACG+ A A
Sbjct: 174 -DDVKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            +VA+     T     V + GG L I W   +NH+F TG A   + G++ I
Sbjct: 233 VLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283


>gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
 gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
          Length = 288

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 140/293 (47%), Gaps = 26/293 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D       +T + + AL+   + HF    DQ++L+        D
Sbjct: 3   LPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALA---DRHFGVGADQVLLVERPTLDGAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC VRF+  +    + +   +   G+L      +G + VD
Sbjct: 60  FRYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-------LRNPFVVSMGNPHAIFFVE 172
           MG P+ +   +P    FD    D    G  + LF        R   VVSMGNPHA+  V 
Sbjct: 120 MGSPVFEPARVP----FDAAGLDARREG-ADTLFPLEVGGTTRWISVVSMGNPHAVQVV- 173

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+  + +A  G L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+
Sbjct: 174 DDVETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAA 233

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDI 281
           V A       +  V+V+  GG L I W         + M G A   +EG  ++
Sbjct: 234 VAAGIRRGLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFEL 286


>gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens]
 gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens]
          Length = 277

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T + I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           SV+MG P L    IPL       DR        +N+    N   +S+GNPHA+  VE+ +
Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-I 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   
Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +   +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933]
 gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15]
 gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1]
 gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3]
 gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101]
 gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520]
 gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482]
 gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120]
 gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263]
 gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489]
 gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007]
 gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509]
 gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2]
 gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1]
 gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3]
 gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253]
 gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167]
 gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227]
 gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9]
          Length = 275

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073]
 gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972]
          Length = 274

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K+++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
 gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
          Length = 277

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  + ++   C                + HF    D +++I+  + A  D  
Sbjct: 3   FTKMHGLGNDYVYVN---CFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  K+ +   + 
Sbjct: 58  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P L  + IP+    +++  +   +G + +        VSMGNPH + +V+D L  
Sbjct: 118 VDMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVKD-LEG 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G     H  F + VN    +V   +++++R WERG G T ACG+ ACA  VAS 
Sbjct: 173 VKIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               T   V+VK+LGG LLIEW  +   V+MTG A   ++G++ I
Sbjct: 233 LNGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277


>gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
 gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
          Length = 277

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T + I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           SV+MG P L    IPL       DR        +N+    N   +S+GNPHA+  VE+ +
Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   
Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +   +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
 gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
          Length = 278

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 144/288 (50%), Gaps = 26/288 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           + F+KM G+GN  +V+D  G   N+  S  +     D +T   FDQ++L+    D  +D 
Sbjct: 5   MQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             RI N DGSEV  CGNG RC  RF     LT++ K K  T ++ R  L   EN D  + 
Sbjct: 63  HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMTLTINENDD--VC 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE  +  
Sbjct: 120 VNMGEPEFEPQKVP----FRAVKEEKTYIIRAQERTVLC-GVVSMGNPHCVVQVES-VQT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---V 234
            ++   G  L  H  F E  N+    + S E + LR +ERG G T ACGS ACA+V   +
Sbjct: 174 AEVEVLGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGI 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             G L K    V V + GG L I W      ++MTG A   ++G + I
Sbjct: 234 GQGLLSKR---VRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278


>gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF)
           (SP:P08885) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 275

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271


>gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205]
          Length = 341

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 138/293 (47%), Gaps = 30/293 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M  F+K +G+GN  L++D R   D      +T + +  L           +++    +  
Sbjct: 1   MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPPNGG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSI 116
            +  +RI N DG+E + CGNG+RC+ RFL         +++  +T+ G +V +   DG+I
Sbjct: 61  GELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGTI 120

Query: 117 SVDMGEPILDWKLIP---------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            VDMG P L    IP         L     ++D +RF +               MGNPH 
Sbjct: 121 RVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERFAVA-----------AAGMGNPHV 169

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  V D +   DL  FG+ L  HP F    N+    V S   L +R WERG G T ACG+
Sbjct: 170 VVPV-DSVDEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGT 228

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            ACA++VA   L  + R   + + GG L I W   N  VFM G A+  ++G +
Sbjct: 229 GACATLVACHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281


>gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 275

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158]
          Length = 274

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 131/283 (46%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + IP            F      +++L           VVSMGNPH +  V D++
Sbjct: 121 PGFEPQQIP------------FRANKAENIYLMRAVEQTVMCGVVSMGNPHCVIQV-DNV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V  
Sbjct: 168 KTAAVETLGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAV 227

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                     V V + GG L I W    H +FMTG A   ++G
Sbjct: 228 GIQQGLLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDG 270


>gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786]
          Length = 293

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 141/289 (48%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALA---DRHFGIGADQLLLVEKPTVEGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G+++     +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ +   +P  A   +        + P++ +   R   VVSMGNPHA+  V DD  
Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               + +  V+V   GG L I W     +N  + M G A   +EG +D+
Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287


>gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297]
 gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297]
          Length = 274

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 11/274 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID       ++++ I   +       FDQ++L+        D   RI
Sbjct: 5   FTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDFRYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV++CGNG RC  RF+     ++  +   ET  G L  +   +G ++VDMG P 
Sbjct: 65  FNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDMGRPR 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                IP       +  D+  +  +N L    +   +++GNPH +  V DD+   D+   
Sbjct: 125 TRPDKIPF------LADDKAALYDINVLDETLSISAINVGNPHCVTRV-DDVLTADVERL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H  F + VN    ++    ++ LR +ERGVG T ACG+ ACA+VVA       +
Sbjct: 178 GPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNGWLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             VSV + GG L I W    ++ MTG A + +EG
Sbjct: 238 HTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEG 271


>gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 277

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 23/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T + I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           SV+MG P L    IPL       DR        +N+    N   +S+GNPHA+  VE+ +
Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   
Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAI 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +   +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
 gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
          Length = 290

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 152/302 (50%), Gaps = 41/302 (13%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVD 61
            F KM G+GN  + +D+    + +  + + A++    D +T    D ++LI   + A + 
Sbjct: 5   SFTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPLK 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115
             +RI N DGSE ++CGNG+RCV ++      ++ ++F  ET+ G++ A+    +    S
Sbjct: 63  --MRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTS 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNP 165
           ++VDMGEP L+   IP+             +GP     +  PF           VSMGNP
Sbjct: 121 VTVDMGEPRLERSAIPM-------------VGPKAERVVAEPFAIAGGEYEMTAVSMGNP 167

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H IF+V DD+    +   G L+ K   F EGVN+    V +   L  R WERG G+T AC
Sbjct: 168 HVIFYV-DDIQKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQAC 226

Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           G+ ACA+VVAS    KT R     V + GG L I W  +  V MTG A+    G    + 
Sbjct: 227 GTGACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRG 286

Query: 284 GK 285
           G+
Sbjct: 287 GR 288


>gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
 gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
          Length = 274

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTATVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 270


>gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147]
          Length = 293

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 140/289 (48%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALA---DRHFGIGADQLLLVEKPTVEGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ +   +P  A   +        + P++ +   R   VVSMGNPHA+  V DD  
Sbjct: 120 DMGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               + +  V+V   GG L I W     +N  + M G A   +EG +D+
Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287


>gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
 gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
          Length = 265

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM    N  ++ID R    +   D             DQ++ I D  D S D  I 
Sbjct: 1   MNFIKMHSNANDFVIIDRRN-TGDAAIDYAAIAHRKTGVGCDQVVTI-DRSDGSTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +       +VA++   G I V++G P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+AR  D +        P++      P  V+MGNPH +FFV   +    L   G 
Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    MF +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + M GG LL EW ++    ++    + + G L
Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265


>gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
 gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
          Length = 280

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 147/285 (51%), Gaps = 21/285 (7%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---G 237
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+   G
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            L    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KLEH-GKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
 gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
          Length = 284

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++        R   + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178
           P+ +   IP+A   D    +   I   P+N +  R   V  VSMGNPHAI F    +  +
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  
Sbjct: 178 PLGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           L    + V +K+ GG L +EW  ++ V++TG+A+        I TG+W+K
Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280


>gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
 gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
          Length = 286

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 8/236 (3%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
           +I+       D  +RI N DGSE + CGNG+RC  +F+ ++  + + SF+ ET  GIL  
Sbjct: 45  VIYVLPSLDADFKMRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFP 104

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHA 167
           +  ++G++ VDMG P L+   IP+     K+  D   +I   N  +  N   VSMGNPH 
Sbjct: 105 EILKNGNVCVDMGIPNLNSDDIPVKGFSKKVIIDELLNISHENKAYRIN--CVSMGNPHC 162

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + F  D +   ++ + G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+
Sbjct: 163 VIFT-DKIDGINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGT 221

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
            +CA+VVA+   +  N    V + GG L I W  +  NHVFMTG A+K ++G +++
Sbjct: 222 GSCAAVVAAILNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEV 277


>gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
 gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
          Length = 292

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 138/292 (47%), Gaps = 18/292 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            + F KM+G GN  +V+D       +T      L+   + HF    DQI+ +       +
Sbjct: 2   QIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLA---DRHFGVGADQILTVRPSPAEGI 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG EV+ CGNG RC  R++  +    R +   +T+ G++  +   DG ++V
Sbjct: 59  DFEYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTV 118

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRD-----RFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           DMG P  D   +P  A       R         +G      + +  VVSMGNPHA+  V 
Sbjct: 119 DMGRPRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLV- 177

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    +A  G L+  H  F + VN    ++     + LR +ERG G T ACG+ ACA+
Sbjct: 178 GDVDAAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAA 237

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282
           V A   L   +  V V+  GG L I W    +  VFMTG A   +EG++DI 
Sbjct: 238 VAAGIRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289


>gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 275

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 271


>gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 277

 Score =  139 bits (349), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 145/286 (50%), Gaps = 24/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V +     DN   D         + HF    D ++++        D  
Sbjct: 3   FTKMNGLGNDFIVFENL---DNEEYDYDILARKLCDRHFGIGADGLLIVE--PSGIADIK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RIIN DGSE + CGNG RC  +++     +K+   + ET+ GI    L+ K++    + 
Sbjct: 58  MRIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDDL 175
           V MG PI    +IP+     K D+  F I     +  R   V S+  G PH I FV + +
Sbjct: 118 VHMGSPIFRTDMIPV-----KTDKKSF-IEETIKIDGRTYIVTSLLVGVPHTIIFV-NSI 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VA
Sbjct: 171 DKNMILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVA 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S    KT R V V    G L IEW  +N++++TG A++ + G++ I
Sbjct: 231 SALTEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276


>gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
 gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
          Length = 277

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 142/284 (50%), Gaps = 21/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG+GN  + +D  G + ++  D    +    + HF    D +++I        D  
Sbjct: 5   FTKMEGLGNDYIYVD--GINQDVCMDK-EFIKKISDRHFGIGSDGMIVI--LPSDKYDFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE + CGNG+RC  +F+       +     ET  G+ + +   DG       
Sbjct: 60  MRMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGAK 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+PIL    IP   + + M      I    +    N   +SMGNPH + FV DDL  
Sbjct: 120 VDMGKPILTCSDIPCNYNQETMIDQTIVIDDYKY----NLTSISMGNPHTVTFV-DDLET 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL   G     H MF EGVN     V +   + +R WERG G T ACG+ ACA++ AS 
Sbjct: 175 LDLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYASY 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + T   V+V++LGG L IE+  N+ + M+G A   +EG +++
Sbjct: 235 LNNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277


>gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
 gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
          Length = 380

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 22/290 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R      NI     N +    +  F    D ++L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +++  ET+ G++V +   DG 
Sbjct: 61  E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFV 171
           I VDMG+P L+   +P       + + R  + P   + L+   +    V MGNPH +  V
Sbjct: 120 IRVDMGKPFLNSDQVPT-----NLPQGRSGL-PQGEIDLQGSTLQLAAVGMGNPHVVVPV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D L      ++G+ L    +F    N+    V    +L++R WERG G T ACG+ ACA
Sbjct: 174 QD-LKSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ++VA+  L  +    +VK+ GG L I W D    VFMTG A   ++G L+
Sbjct: 233 TLVAASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLN 282


>gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
 gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
          Length = 276

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H ++    +  L  D NT   FDQ++++       VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGVGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G +  L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQLVELA-----AVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863]
          Length = 275

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
          Length = 285

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 145/285 (50%), Gaps = 10/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           ++   + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  
Sbjct: 7   IKEGNMQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPD 66

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I 
Sbjct: 67  LDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIR 126

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPI +   IP   + +K +++      V  +       VSMGNPH +  V D++  
Sbjct: 127 VNMGEPIWEPNKIPF--TANKFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DNIET 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++A  G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+     
Sbjct: 181 ANVAELGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGI 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 241 MQGLLDNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285


>gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
 gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
          Length = 289

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  + + P F + VN    +V S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289


>gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51]
 gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51]
          Length = 285

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 14/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+    + +
Sbjct: 125 FEPNKIP----FRAKQSEKTYILRVGEHTLFCG---AVSMGNPHVVTVV-DDIRTAAVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           +  V V + GG L I W      ++MTG A   ++G 
Sbjct: 237 DEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGP 273


>gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris]
 gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris]
          Length = 277

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 142/285 (49%), Gaps = 23/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T   I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           SV+MG P L    IPL       DR        +N+    N   +S+GNPHA+  VE+ +
Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISIGNPHAVLLVEN-I 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   
Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +   +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
 gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
          Length = 283

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 146/290 (50%), Gaps = 24/290 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           + ++ F KM G GN  + +D      G  + ++ +  +AL T   +  D ++LI   +  
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE-WSALHTGIGS--DGLVLIG--RSG 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
             D  +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L  + N+
Sbjct: 57  KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNK 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
             +++VDMG P  +         +D  +       P+    +R     VSMGNPH + FV
Sbjct: 117 VDTVTVDMGIPACE------PACYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV 170

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            +D+   DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA
Sbjct: 171 -NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACA 229

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           + VA+    ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 230 TAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454]
 gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 14/286 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64
           F KM G GN  +V+D  G  + I+ + A+     D N     DQ++L+       VD   
Sbjct: 46  FTKMHGAGNDFVVLD--GVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVDFKY 103

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  T   + ++   +   G++      +G + VDMG 
Sbjct: 104 RIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVDMGA 163

Query: 123 PILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+L    +P   S     RD    + P++ H   +   VVSMGNPHA+  V DD     +
Sbjct: 164 PVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIV-DDADAAPV 222

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  H  F   VN    ++ S   + LR +ERG G T ACGS ACA+VV      
Sbjct: 223 NRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGIRRG 282

Query: 241 KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
             +  V V+  GG L I W    + +  V M G A   +EGK+D+ 
Sbjct: 283 VLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328


>gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1]
 gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 142/283 (50%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      +++      ++        DQ++++   +   VD   
Sbjct: 3   IKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   DG I+VDMG 
Sbjct: 63  RIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDMGA 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDL 180
           PIL    +P  +      +     + P++         VVSMGNPHA+  VED      +
Sbjct: 123 PILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDS-EAAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G L+ +H  F + VN    +V     ++LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
             +  V+V+  GG L I W      V MTG A   +EG++++ 
Sbjct: 242 LLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284


>gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60]
          Length = 274

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + FAKM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQLLVVEPPYDPDLDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    R+     T  G +      D  ++V+MG
Sbjct: 60  YRIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   IP    F     ++ +I  V    +     VSMGNPH +  VED +    + 
Sbjct: 120 EPQFEPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-VSRAQVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E VN+   +V   + + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V + GG L I W      + MTG A   ++G
Sbjct: 234 LDEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDG 270


>gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
 gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
          Length = 280

 Score =  138 bits (348), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 141/296 (47%), Gaps = 33/296 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM GIGN  + +++      + +  +  + ++       D ++LI   +    DA ++
Sbjct: 3   FTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DARMQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISV 118
           + N DGSE + CGNG+RCV +++      K+     ET RG+L  +       +   + V
Sbjct: 61  MFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERVRV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAIFFVED 173
           +MG PIL    IP A   D          PVN   +      +   VSMGNPH + FV D
Sbjct: 121 NMGTPILKSADIPTALPGDP---------PVNQPLVVGDKTISVTCVSMGNPHCVTFV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +L    +   G  +  H  F   VN   A+V S   + LR WERG G T ACG+ ACA++
Sbjct: 171 ELTDAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATL 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           VA     +T+    + + GG L IEW D   VFMTG A        ++ TG+W  +
Sbjct: 231 VAGVLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPAT-------EVFTGEWFPE 279


>gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 274

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++  + +  V    L    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVPF--RANKAEKT-YIMRAVEQTILCG--VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 270


>gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
 gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
          Length = 277

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 142/285 (49%), Gaps = 23/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T   I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           SV+MG P L    IPL       DR        +N+    N   +S+GNPHA+  VE+ +
Sbjct: 117 SVNMGVPRLAPGEIPLL-----ADRQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-I 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   
Sbjct: 171 DTAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAI 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +   +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 231 ARLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
 gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
          Length = 274

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 139/279 (49%), Gaps = 12/279 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +     + I  L+       FDQ++L+    D  +D   RI
Sbjct: 3   FSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHYRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I V+MGEPI
Sbjct: 63  FNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGEPI 122

Query: 125 LDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +   IP  A  F+K    R  I  V          VSMGNPH +  VE D+   ++A  
Sbjct: 123 WEPAKIPFNANKFEKNYILRTDIQTVLC------GAVSMGNPHCVIQVE-DIKTANVAQL 175

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+          +
Sbjct: 176 GPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLLD 235

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 236 SPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274


>gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
          Length = 289

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116]
 gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116]
          Length = 276

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     R S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG A   ++G+L
Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH]
          Length = 289

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D         +DA + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P   S     R   D     PVN    R   VVSMGNPHA+  V DD+
Sbjct: 120 DMGAPVFEPARVPFDTSGLGGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627]
 gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627]
          Length = 274

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+    +  FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
 gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
          Length = 281

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 150/284 (52%), Gaps = 14/284 (4%)

Query: 5   MVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           M++F KM G+GN  +V+D+   R   D +T   I  L+       FDQ++++      + 
Sbjct: 1   MLEFTKMHGLGNDFMVVDLITQRAYFDTLT---IQRLADRHFGIGFDQLLIVEPPDLPTA 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  K   +G + V
Sbjct: 58  DFKYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRV 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P    +LIP    F   + D  +   +N+  L    VV+MGNPHA+  V D L   
Sbjct: 118 NMGYPKFAPELIP----FVTEETDPLYALELNNNQLLKIDVVNMGNPHAVTIVPDVLTA- 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++AS G  +  H  F E VN+   ++ + + + LR +ERG G T ACG+ ACA+ V+   
Sbjct: 173 EVASIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMR 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                  V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 233 RGLLAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276


>gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T]
 gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T]
          Length = 277

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 133/281 (47%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VID      ++T   + A++   + HF    DQ++++       VD  
Sbjct: 5   FTKMHGLGNDFVVIDATRAPVDLTPARVKAIA---DRHFGVGCDQLLVVEPAARPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+  +    +     ET  GI+  +   DG ++VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    +P     D + +    +G            VSMGNPHA+  V D +    + 
Sbjct: 122 VPELAPAKVPFVSDSDAVVQP-LQVGGDTVAIT----AVSMGNPHAVQVVAD-VDAAPVV 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  + +H  F   VN    +V     + LR +ERG G T ACG+ ACA+VVA      
Sbjct: 176 EQGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               V V   GG L I W      V MTG A   +EG++++
Sbjct: 236 LETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMEL 276


>gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047]
          Length = 261

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 9/237 (3%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103
           FDQ++++   Q    D   RI N DGSEV+ CGNG RC   F+  +    +K    ET  
Sbjct: 29  FDQLLVVEPPQSPKADFRYRIFNADGSEVEQCGNGARCFALFVRDKKLTNKKHLIVETKG 88

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G++      +  ++VDMG P L    IP    F+  ++   +I  +N   L +   VSMG
Sbjct: 89  GVIELHVTNNNEVTVDMGVPTLQPSKIP----FEAKEQAISYIIDINGQPL-DISAVSMG 143

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPH +  VED +   D+ + G L+  H  F +  N    ++ S   + LR +ERG G T 
Sbjct: 144 NPHGVTLVED-VKTADVETLGPLVEGHSRFPQRTNAGFMQIISPSEIRLRVYERGAGETL 202

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           ACG+ ACA+VVA         +V+V + GG L I W  +   V MTG  KK +EG++
Sbjct: 203 ACGTGACAAVVAGRLRGLLEESVTVHLPGGSLNIVWPGEGQPVKMTGPCKKVFEGRI 259


>gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74]
 gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70]
 gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671]
 gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71]
 gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71]
 gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6]
 gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218]
 gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227]
 gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304]
          Length = 274

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica]
          Length = 278

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D NT   FDQ++++    D  +D  
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLA-DRNTGIGFDQLLVVEAPYDPDLDFH 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MG
Sbjct: 64  YRIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   IP    F  +  ++ +I  V    +    VVSMGNPH +  V D +   ++ 
Sbjct: 124 EPEFEPHNIP----FRALRAEKTYILRVIEKTVLCS-VVSMGNPHCVIQVAD-VETAEVE 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V        
Sbjct: 178 ILGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQL 237

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V V + GG L I W    N ++MTG A   ++G + +
Sbjct: 238 LDSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278


>gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98]
 gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14]
 gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9]
 gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210]
 gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894]
 gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177]
 gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112]
 gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215]
 gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
 gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
          Length = 289

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
 gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
          Length = 279

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 23/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           + F KM G GN  + I+   C        DAI       + H+    D I+LI     A 
Sbjct: 3   LSFTKMHGTGNDYIYIN---CFKEKFTVEDAIKYSPILSHRHYSIGADGIILIMPSDKAD 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113
           V   +R+ N DGSE + CGNG+RCV ++   R   K      ET+RGIL A    K+   
Sbjct: 60  VQ--MRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            ++ + M  PIL+   IP       +  +        + F      VSMGNPHA+ FV +
Sbjct: 118 DTVEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYFT----AVSMGNPHAVIFV-N 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL++ D++S G+ +  + +F    N+    + +   +  RTWERG G T ACG+ A A  
Sbjct: 173 DLHNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVC 232

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           VA     +T+  +   +LGG L++ + +N++VFM GEA+  +EG + +
Sbjct: 233 VAGFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279


>gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
          Length = 269

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 150/278 (53%), Gaps = 16/278 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  +VI+ R   D  +  AI           D ++++        D  +RI N D
Sbjct: 1   MHGLGNDFIVIEARENVD-YSELAIKLCDRHFGIGADGLLVVE--PSGIADIRMRIFNAD 57

Query: 71  GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISVDMGEPI 124
           GSE + CGNG RC  +++  R  +K++    ET+ G+++ +   EN +  S+ V MG PI
Sbjct: 58  GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +   IP+     K D+ +F   PV     +     + +G PH I FV+  L    +   
Sbjct: 118 FEANKIPV-----KTDKQKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKS-LDENMIKEL 171

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L KT 
Sbjct: 172 GPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTE 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 232 RNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269


>gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
 gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
          Length = 354

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 138/291 (47%), Gaps = 31/291 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIML 51
           M+ F+K +G+GN  L+++ R        D ++   +D + ++             D ++L
Sbjct: 1   MLQFSKYQGLGNDFLILEGR-------QDQLDVAISDPDPNWVRRICDRRFGVGGDGVIL 53

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVA 108
               Q A  D  +RI N DG+E + CGNG+RC+ R+L           +  ET  G++  
Sbjct: 54  ALPPQ-ADGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRP 112

Query: 109 KENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           +   +G + VDMG P L+   IP        + R    I  V      N   V MGNPH 
Sbjct: 113 ELMTNGQLRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDGVPL----NVASVGMGNPHV 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  V DDL       +G  L  HP+F    N+   +V S   L++R WERG G T ACG+
Sbjct: 169 VVPV-DDLSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGT 227

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            ACA++VA+  L   +    V + GG LLI W      V MTG A+  ++G
Sbjct: 228 GACATLVAAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDG 278


>gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
 gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
          Length = 244

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 16/228 (7%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGS 115
           D  +RI N DGSE + CGNG+RC+  FLT     SR K   +   T+ GI+  +   DG 
Sbjct: 24  DYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSK-DYYLIHTLAGIIRPQLTDDGQ 82

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE 172
           + VDMG P L  + IP  L     K+      IG    H+       VSMGNPH I FVE
Sbjct: 83  VKVDMGSPRLLAQEIPTTLVPGDSKVINLPLEIGKQTWHIT-----CVSMGNPHCITFVE 137

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +    +   G     HP+F +  N    +V +   L +R WERG G+T ACG+ ACAS
Sbjct: 138 D-VASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHLKMRVWERGAGITLACGTGACAS 196

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +VA    +  +R  ++++ GG L I+W + +  ++MTG A++ + GK+
Sbjct: 197 LVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTGPAERVFTGKI 244


>gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 32  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 92  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D+K   L+   + +D + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 152 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 205

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 206 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
 gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
          Length = 288

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 143/290 (49%), Gaps = 24/290 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D       +T + + AL+   + HF    DQ++L+       VD  
Sbjct: 5   FTKMQGAGNDFVVLDGTAGDLGLTPERVRALA---DRHFGIGADQLLLVERPSLDGVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  +    + +   +   G++      +G + VDMG
Sbjct: 62  YRIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDMG 121

Query: 122 EPILDWKLIP-----LARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDL 175
            P+ +   +P     LA   D  D     + P+  +   R   VVSMGNPHA+  V DD 
Sbjct: 122 SPVFEPARVPFDVAGLAGRRDGADT----VYPLEVNGATRWISVVSMGNPHAVQLV-DDA 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G ++ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 177 EAFAVLEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                  +  V+V+  GG L I W         ++M G A   ++G +++
Sbjct: 237 GIRRGLLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIEL 286


>gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
 gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
          Length = 280

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M   +   +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPVK--MRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE ++CGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D+K   L+   + +D + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
 gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
          Length = 276

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 131/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 2   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 122 EPNFEPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVETAAVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 176 TLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               V V++ GG L I W      ++MTG A   ++G
Sbjct: 236 LAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDG 272


>gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 275

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       F+Q++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271


>gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
          Length = 289

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 139/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D         +DA + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P   S     R   D     PVN    R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 238 GIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
 gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
          Length = 269

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 35/291 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172
           ++VDMG P               ++ +    G       + PF    VSMGNPH + FVE
Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+   +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 -DITRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            VA+     T R   V M GG + IEW++ + H+ MTG A K ++G+++ K
Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIEDK 268


>gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2]
 gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
 gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1]
 gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
          Length = 276

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 143/288 (49%), Gaps = 24/288 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H ++    +  L  D NT   FDQ++++       VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGVGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P L    IP      A S++ +++  R  +             VSMGNPH +  VE+ 
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----------AVSMGNPHGVLRVEN- 168

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ V
Sbjct: 169 VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A          V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 229 AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 281

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F     +  +   + +    N  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFIAEQPEALYTLELANDQNINIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
 gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
          Length = 289

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDDA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
 gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
          Length = 275

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 16/280 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V   +  G 
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           L +T   V V++ GG L I W      +FMTG A   ++G
Sbjct: 235 LAET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 271


>gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a]
 gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a]
          Length = 274

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K+++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKVEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
 gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
          Length = 275

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 21/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  + I+   C      D      T  + H+    D ++LI   + +  D  
Sbjct: 3   FTKMHGLGNDYVCIN---CFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + I N DGS    CGNG+RC+ +++       +++ + ET  GI    L  ++ +     
Sbjct: 58  MEIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAM 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+   IP+    D +  D   +   N+        +SMGNPHA+ F+E+ +  
Sbjct: 118 VDMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLEE-ING 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  L  HP F E  N+    VT+ + +++R WERGVG T ACG+ ACA+VVAS 
Sbjct: 173 ISLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
               T+  V VK+LGG L + W    NHVF+ G A K ++G L
Sbjct: 233 LNDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275


>gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct]
          Length = 277

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H ++    +  L  D NT   FDQ++++       VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGIGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G    L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
 gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
          Length = 280

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 151/284 (53%), Gaps = 15/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC  RF+ ++    ++     T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLY 176
           MG P+L+   IP   +  KM++  + +   N       F+   VSMGNPH +  VE D+ 
Sbjct: 119 MGIPVLEPGRIPF--NAKKMEKT-YLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIE 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+   G LL +H  F +GVN+   ++ +   + LR +ERG   T ACG+ ACA+ V  
Sbjct: 175 AADVEGIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
               K +  V V + GG L I W  +   ++MTG A+  ++G++
Sbjct: 235 QLQGKLDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278


>gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 276

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
 gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
          Length = 276

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H ++    +  L  D NT   FDQ++++       VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVK-LWGDRNTGIGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G    L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
 gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
          Length = 278

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           + F+KM G+GN  +V+D  G   N+  S  +     D +T   FDQ++L+    D  +D 
Sbjct: 5   MQFSKMHGLGNDFMVVD--GVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF  L     ++     T  G +    N +  + V+M
Sbjct: 63  HYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE  ++  ++
Sbjct: 123 GEPDFEPQRVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVIQVES-IHTAEV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H  F E  N+    + S + + LR +ERG G T ACGS ACA+V       
Sbjct: 177 EVLGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQG 236

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              + V V + GG L I W    + ++MTG A   ++G + +
Sbjct: 237 LLAKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278


>gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
 gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
          Length = 268

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 35/291 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172
           ++VDMG P               ++ +    G       + PF    VSMGNPH + FVE
Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+   +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 -DITQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            VA+     T R   V M GG + IEW + + H+ MTG A K ++G+++ K
Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268


>gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
          Length = 274

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 153/287 (53%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VI+     +N+    +     D   HF    D ++++        D  
Sbjct: 3   FTKMHGLGNDFIVIE---ALENVDYSELAIKLCD--RHFGIGADGLLVVE--PSGIADIR 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSIS 117
           +RI N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +   EN +  S+ 
Sbjct: 56  MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVK 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174
           V MG PI +   IP+     K D+ +F   PV     ++      V  G PH I FVE  
Sbjct: 116 VYMGNPIFEASKIPI-----KSDKQKFINEPVKIDGKVYKLTSLRV--GVPHTIVFVES- 167

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS V
Sbjct: 168 LDENMIKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAV 227

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS  L KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 228 ASAVLGKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 276

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RLVPEEIPFQTAEQAKSYSLDVDGQSVEL-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
 gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
          Length = 284

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 15/288 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +++ F K  G+GN  ++ID R      +I S   + + +    H+    D I+LI     
Sbjct: 2   TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILP-PV 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114
           A  D  ++I N DGSE + CGNG+RC++R++    +     SF  ET+ G  +     +G
Sbjct: 61  AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAG-KIQINIEEG 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +I VDMG PI   + IP     ++    +  I  ++  FL +    SMGNPHAI  V   
Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFLVS--ACSMGNPHAIIEVPT- 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  L  +G  L  HP+F +  N+   +V S   +++  WERG G T ACG+ ACA + 
Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               L K N  + VK+ GG L I W      +FM G+AK  + G  +I
Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284


>gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
 gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
          Length = 266

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 26/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM+G GN  + ++    +     + +    +  +T      L+        D  +R
Sbjct: 3   IEFTKMQGAGNDYIYVNTL-IYPLPNPEELAVAWSRPHTGIGSDGLVLIGSSGKADFSMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119
           I N DGSE + CGN  RC+ +++      ++   T +T+ GI    L  ++ +  +++VD
Sbjct: 62  IFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAVTVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   + L   +                  R    VSMGNPH + FV DD+   D
Sbjct: 122 MGIP-AEIHPVDLGEGYP----------------YREGIAVSMGNPHLVIFV-DDMEQVD 163

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G +L +HP+F + VN+  A+V +   + +R WERG G+T ACG+ ACA+ VAS   
Sbjct: 164 LPRVGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVASAYT 223

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           H+      + M GG L I W  +   +FMTG A+K ++G + +
Sbjct: 224 HRCPGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266


>gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
 gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
          Length = 311

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   N HF    DQ++++        
Sbjct: 25  LSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALA---NRHFGIGADQLLVVEKPTVDGA 81

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + V
Sbjct: 82  DFKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVV 141

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ +   +   A   +     R  + P++     R    VSMGNPHA+  V DD  
Sbjct: 142 DMGAPVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAE 200

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            Y +   G L+ +H  F + VN    ++ S   + LR +ER  G T ACG+ ACA+V A 
Sbjct: 201 AYPVLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAG 260

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V   GG L I W     +   + M G A+  +EG++D+
Sbjct: 261 IRRGLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDL 309


>gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
 gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
          Length = 295

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +++D       ++      L+   + HF    DQI+ +       +D
Sbjct: 6   IRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLA---DRHFGVGADQILTVRPSPGEGID 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC VRF+  +    + +   +T+ GI+      DG ++V+
Sbjct: 63  FEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVTVN 122

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPV---NHLFLRNPFV--VSMGNPHAIFFVED 173
           MG P+ + + IP             +   P+    H      FV  VSMGNPHA+  V D
Sbjct: 123 MGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV-D 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    +   G L+  HP F   VN    +V S   + LR +ERG G T ACG+ ACA+V
Sbjct: 182 DVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACAAV 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           VA   L   +  V V   GG L IEW    +  V MTG A   +E ++++ 
Sbjct: 242 VAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292


>gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 275

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           EP  +    P   +F     ++ +I        L    VVSMGNPH +  V D++    +
Sbjct: 121 EPNFE----PAQVTFRANKAEKTYIMRAAEQTILCG--VVSMGNPHCVIQV-DNVDTAAV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V       
Sbjct: 174 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
                V V++ GG L I W    H ++MTG A   ++G
Sbjct: 234 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 271


>gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
 gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
          Length = 287

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 140/289 (48%), Gaps = 17/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V D      ++T++    ++        DQI+++   Q+ + D   
Sbjct: 3   LKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R   RF+T  +   R     ET  GI+  +  ++G+++V+MG+
Sbjct: 63  RIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNMGK 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSMGNPHAIFFVED 173
           P      IP  A            I P   L L  P         +VSMGNPHA+  VE+
Sbjct: 123 PEFSPDRIPFDASGLKGKPAGDDMIWP---LALELPKGLQTIEVSLVSMGNPHAVQIVEN 179

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            +    +   G L+  H  F    N     + +  S+ LR +ERG G T ACG+ ACA+V
Sbjct: 180 -VDKAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAV 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           VA       +  V+VK  GG L I W+ N H V MTG A   + G++D+
Sbjct: 239 VAGIRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287


>gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 285

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASV 60
           +  + F K +G+GN  +++D R       S  +A+   +       D ++ +   Q+ + 
Sbjct: 2   TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGA- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +R+ N DGSE + CGNG+RC+ RFL       +  ++   T+ G +V +   DG ++
Sbjct: 61  DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L  K IP  L    +K+ R    +             VSMGNPH + F+E++ 
Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGREWRVT----AVSMGNPHCVVFLEEEG 176

Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              +L  A+ G L   HP F E  N    +V S   L LR WERG G T ACG+ ACA +
Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           VA+    +     +V++ GG L I W     HV+MTG A   + G
Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSG 281


>gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 274

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DNVETAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDG 270


>gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
 gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
          Length = 278

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 28/290 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G+GN  +VI+      ++T      +    + HF    DQ++++   ++   D
Sbjct: 3   LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG-D 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC  RF+   +   + +   ET RGI+      +G +SV+
Sbjct: 62  FRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVSVN 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDL 175
           MG P  +   IP  ++  +M        PV  L + +  +    VS+GNPHA+  + D  
Sbjct: 122 MGVPQFEPAEIPF-QAAQRM--------PVYPLQIGDKTIEISAVSIGNPHAVQIIPD-- 170

Query: 176 YHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
              DLA     G  +  HP+F E VN    ++     + LR +ERG G T ACG+ ACA+
Sbjct: 171 --IDLAPVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAA 228

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           VV        +  V V M GG L I W   +  V+MTG A   +EG +D+
Sbjct: 229 VVCGILRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278


>gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2]
 gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 269

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 35/291 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172
           ++VDMG P               ++ +    G       + PF    VSMGNPH + FVE
Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+   +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 -DITRINLPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            VA+     T R   V M GG + IEW + + H+ MTG A K ++G+++ K
Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268


>gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933]
 gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024]
 gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B]
 gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412]
 gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W]
 gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110]
 gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82]
 gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1]
 gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042]
 gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412]
 gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034]
 gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W]
 gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146]
 gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407]
 gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W]
 gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1]
 gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431]
 gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112]
 gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83]
 gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212]
 gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327]
 gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B]
 gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89]
 gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687]
 gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14]
 gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010]
 gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68]
 gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180]
 gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1]
 gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11]
 gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252]
 gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125]
 gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044]
 gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86]
 gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74]
 gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88]
          Length = 274

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
 gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
          Length = 284

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 32/294 (10%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIMLIH 53
           +F+K +G+GN  ++ D R       S+ ++ L + +  +F             D I+LI 
Sbjct: 4   NFSKYQGLGNDFIIFDAR-------SNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILI- 55

Query: 54  DFQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVA 108
              +++   F+R  I N DGSE + CGNG+RC++ FL    +    +    ET  G+++ 
Sbjct: 56  --LESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILT 113

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + + +I V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I
Sbjct: 114 SIDCNENIKVNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMI 171

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            FV +D+       +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ 
Sbjct: 172 VFV-NDIEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTG 230

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           ACA +V +  L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 231 ACACLVVTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
 gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
          Length = 275

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           M+ F KM G+GN  +V+D  G   N+  + + I  L+  +    FDQ++L+    D  +D
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG+++V+
Sbjct: 59  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVN 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+++   IP      K ++      P+          +SMGNPH +  VE D+   +
Sbjct: 119 MGVPVIEPSQIPFKAK--KSEKTYLLQTPMQTYLCG---AISMGNPHCVIQVE-DVQTVN 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ L +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+       
Sbjct: 173 VDEIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQ 232

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            K ++ V V + GG L+I W  +   ++MTG A+  ++G++ +
Sbjct: 233 DKLDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275


>gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
 gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
          Length = 284

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH-DNITS-DAINALSTDDNTHF----DQIMLIHDFQDASV 60
           +F+K +G+GN  ++ D R  + D++ S +  N +    N +F    D I+LI    +++ 
Sbjct: 4   NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILI---LESNN 60

Query: 61  DAFIR--IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGS 115
             F+R  I N DGSE + CGNG+RC++ FL    +    +    ET  G+++   + + +
Sbjct: 61  KCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNEN 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I FV +D+
Sbjct: 121 IKVNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDI 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ ACA +V 
Sbjct: 178 EGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 238 TSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 274

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 270


>gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
 gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
          Length = 276

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   D+ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S + + LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           + +V V + GG L I W      +FMTG A   ++G+L
Sbjct: 237 DESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274


>gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
 gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
          Length = 281

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 134/279 (48%), Gaps = 7/279 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +V+D  G    ++ + I  L         DQI++I       VD   RI
Sbjct: 5   FTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDFRYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N  G EV+ CGNG RC VR++       + +   ET+  +L      DG + VDM  P+
Sbjct: 65  FNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDMNRPV 124

Query: 125 LDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            D   +P  A        + F + P+    +    V+SMGNPHA+  V D       A  
Sbjct: 125 FDLARVPFDASGLTPRLVNGFELWPLADAGVEVA-VLSMGNPHAVMRVADVDAAPVAAV- 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  H  F   VN    +V S   + LR +ER  G T ACG+ ACA+VVA   L   +
Sbjct: 183 GPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRLGWLD 242

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           R V V   GG LLIEW D++  V MTG A   +EG++++
Sbjct: 243 RRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281


>gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
 gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
          Length = 274

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R+     T  G +    + D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   IP    F     ++ +I  V    +     VSMGNPH +  VED +    +A 
Sbjct: 121 PQFDPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-VSQAQVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           +  V V++ GG L I W      + M G A   ++G
Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDG 270


>gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01]
 gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01]
          Length = 276

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG A   ++G+L
Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101]
 gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101]
          Length = 274

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
 gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
          Length = 276

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + D I  L+ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G +V     D  ++V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           EP  +   IP    F     ++ +I   +   LF      VSMGNPH +  V DD+   D
Sbjct: 122 EPEFEPGKIP----FKAKQTEKTYILRADDKTLFCG---AVSMGNPHVVT-VVDDVTTAD 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G LL  H  F E VN    +V   + ++LR +ERG G T ACGS AC +V      
Sbjct: 174 VDTLGPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  V V + GG L I W      ++MTG A   ++G+L
Sbjct: 234 GLLDEKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQL 274


>gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1]
          Length = 276

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP       +       G ++ +       VSMGNPHA+  V DD++   + 
Sbjct: 122 PPRFIPAEIPFVADAQALSYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVHTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
 gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
          Length = 292

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 144/289 (49%), Gaps = 27/289 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
            S + F KM+G+GN  + ++  G  + I + +  A+    N +F    D ++LI+  + A
Sbjct: 13  ESRMKFTKMQGLGNDYVYVN--GFEERIENPSEMAVKVS-NRNFGVGSDGLILINPSEKA 69

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
             D  + + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  ++ +
Sbjct: 70  --DFEMEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGK 127

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIF 169
              + VDMG PIL    IP+         D      V  L     +    VSMGNPHA+ 
Sbjct: 128 VVLVRVDMGSPILTPAQIPVIA-------DEAEAVAVPILVDETEYQMTCVSMGNPHAVI 180

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           F+ DD+ H ++   G     H  F   VN    +V    +  +R WERG G T ACG+ A
Sbjct: 181 FM-DDIEHLEIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGA 239

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           CA  VA      T   V+VK+LGG LLIEW  + N ++MTG A+  ++G
Sbjct: 240 CAVAVACILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDG 288


>gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
 gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
          Length = 278

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 42/293 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V++      + T D I+AL+  +    FDQ++L+   + ++ D   RI
Sbjct: 6   FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----------DGS- 115
            N DGSEV+ CGNG RC+ +++     R +  F+  R  +V  + R          +GS 
Sbjct: 66  FNADGSEVEHCGNGARCLGKYI-----RDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSE 120

Query: 116 -ISVDMG----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              V MG     P    +   LA+    +    F  G           +VSMGNPHA+  
Sbjct: 121 LFRVQMGVPDFSPFTTLQTSALAQPL-SLAAGHFECG-----------IVSMGNPHAVIC 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+    + + G+ L +HP+F + VN+   ++ + E + LR +ERGVG T ACG+ AC
Sbjct: 169 V-DDVETAAVTAIGSALQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGAC 227

Query: 231 ASV---VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           A+V   +A G L +T   V V + GG L+I+W  +   +FMTG A   + G++
Sbjct: 228 AAVSVGIARGDLAQT---VHVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277


>gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 276

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNVPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638]
 gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638]
          Length = 274

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F  +  ++ +I   +   +    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFEPSAVP----FRAIKAEKTYIMRASEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H +FMTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDG 270


>gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
 gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
          Length = 276

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       ++      G ++ +       VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFTPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276


>gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v]
          Length = 274

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4]
 gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4]
          Length = 271

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 18/280 (6%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI   +    D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKADFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      ++VDM   
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDM--- 115

Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             D  L+  +R  +  D         V+    +  FV  MGNPH + F+ DD+ + +L +
Sbjct: 116 --DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DDIKNVNLPA 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK 
Sbjct: 172 IGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKA 231

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 232 GRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25]
          Length = 276

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 137/278 (49%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   D+ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGEKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG     ++G+L
Sbjct: 237 DENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14]
          Length = 276

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 138/284 (48%), Gaps = 23/284 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C +    D         + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYVN---CFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       +   T ET+ GI    L  +  +   + 
Sbjct: 58  MAMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVR 117

Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG PIL    IP+    DK +D      G   H+       VSMGNPHA+ +V DD+ 
Sbjct: 118 VDMGSPILTPAEIPVVAEGDKAVDEPILVDGKEYHMTC-----VSMGNPHAVVYV-DDVN 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           +  +   G     H  F   VN    +V    ++ +R WERG   T ACG+ ACA  V+ 
Sbjct: 172 NLPIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSC 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                T   V+VK+LGG L I+W  + N V+MTG A   ++G+L
Sbjct: 232 ILNGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGEL 275


>gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Mississippi]
          Length = 268

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R   + +  D             DQ++ I D  D   D  I 
Sbjct: 4   VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 62  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW ++    +     + + G L
Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 268


>gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
 gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
          Length = 276

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 132/282 (46%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  ++ID       +    I  ++        DQ++L+      S D   
Sbjct: 3   VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDM 120
           RI N DGSE   CGNG RC  RF+  R    +++           L  ++N D  + VDM
Sbjct: 63  RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHD--VEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IPL R  + ++ D    G    +       VSMGNPHAI  V D + +  L
Sbjct: 121 GPPNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRV-DAVDNGSL 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  H  F EG N     +   +++ LR +ERGVG T ACGS ACA+VV    + 
Sbjct: 175 ERLGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V+V++ GG L I W  DN+ V MTG     +EG + +
Sbjct: 235 WLDDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276


>gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 278

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 18/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDA 62
           + F KM  +GN  + +D       + +D + +L+   +D         LI      S D 
Sbjct: 1   MQFFKMHALGNNYVFVDT--ARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSADV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGS 115
            +RI N DGSE +SCGNG+RCV R+   R  +    F+ ET  G++ A+     E R   
Sbjct: 59  GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +++DMGE     + +P  R  D+ +  R   G   +       +VSMGNPH +  V+   
Sbjct: 119 VTIDMGEARFGTEAVPY-RGADRGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G ++  HP F E VN+    V + + +D R +ERG G+T ACG+ ACASV A
Sbjct: 174 DVD-VERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                     V+V +LGG L IE  D+ HV+MTGEA    EG
Sbjct: 233 LAKKGLVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEG 274


>gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
 gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
          Length = 283

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 137/284 (48%), Gaps = 21/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEGIGN  +  D  G +  I  D    +   D  HF    D +++I        D  
Sbjct: 11  FTKMEGIGNDYIYFD--GINQEIPMDKEFIMKISDR-HFGIGSDGMIVI--LPSDQYDFK 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE   CGNG+RC  +F+       +     ET  G+   +   DG       
Sbjct: 66  MRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV D L  
Sbjct: 126 VNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVSD-LDT 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A  
Sbjct: 181 LDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACY 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             H T+  V+V++LGG L IE+ D   + M+G A   + G ++I
Sbjct: 241 LNHYTDSKVTVELLGGCLEIEYVDET-IMMSGPAANVFNGTIEI 283


>gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
 gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195]
 gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
          Length = 284

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/282 (34%), Positives = 148/282 (52%), Gaps = 19/282 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + ++  AI   S       D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISV 118
           RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+   EN +   ++V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L    +P+    ++    +    G V          VSMGNPH +F + D +  
Sbjct: 124 DMGEPRLTKSELPMLDGGEEHTINETMAFGEVE----LTGTAVSMGNPHIVFPIAD-IEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              + K N+ ++V + GG L+I W DN HV MTG A+   EG
Sbjct: 239 LNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEG 280


>gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
 gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
          Length = 261

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 123/241 (51%), Gaps = 17/241 (7%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101
           FDQ++++    D   D   RI N DGSEV+ CGNG RC  RF+  RMK    + S +  T
Sbjct: 29  FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSLSVST 86

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFV 159
            +G ++     D  + V+MG P  +   IP    F     ++ +I  V+   LF      
Sbjct: 87  KKGKIILSIEEDDQVCVNMGVPEFEPSKIP----FRAKQAEKTYIMRVDEQTLFCG---A 139

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPH +  VED +   ++   G LL  H  F E VN    +V + + ++LR +ERG 
Sbjct: 140 VSMGNPHVVTVVED-IATAEVERIGPLLESHERFPERVNAGFMQVVNRQQINLRVYERGA 198

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           G T ACGS ACA+V         +  V+V + GG L I W      ++MTG A   ++G+
Sbjct: 199 GETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRLEISWQGPGQPLYMTGPATHVFDGQ 258

Query: 279 L 279
           L
Sbjct: 259 L 259


>gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 284

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   
Sbjct: 11  IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RCV    FL   + ++     T +  +  K   D +I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + I +++   K+  + F +  +N     +  +VS+GNPH +  VE  + +  +  
Sbjct: 131 PSFKLEEISISK---KIVLNNFSVKLINKNLKCS--LVSIGNPHCVIKVES-INNAPVKK 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +  
Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V +LGG L+I+W   N+ ++M G A   ++G + I
Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284


>gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
 gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
          Length = 278

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 147/291 (50%), Gaps = 23/291 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALS-TDDNTHFDQIMLIHDFQD 57
           M+ +M  F+KM G+GN  +V+D  G   N+  + + I+ L+       FDQ++L+    D
Sbjct: 1   MERNM-QFSKMHGLGNDFMVVD--GVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYD 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENR 112
             +D   RI N DGSEV  CGNG RC  RF     LT++ K K  T ++ R +L   EN 
Sbjct: 58  PDLDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVST-QSGRMVLTINEND 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           D  + V+MGEP  + + +P    F  +  ++ + I  +    L    VVSMGNPH +  V
Sbjct: 117 D--VCVNMGEPEFEPQKVP----FRAIKAEKTYIIRALERTVLCG--VVSMGNPHCVIQV 168

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E  +   ++   G +L  H  F E  N+    + S   + LR +ERG G T ACGS ACA
Sbjct: 169 E-SVKTAEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACA 227

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +V            V V + GG L I W+     ++MTG A   ++G + +
Sbjct: 228 AVAIGIQQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278


>gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75]
 gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75]
          Length = 274

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
 gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
          Length = 277

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R   + +  D             DQ++ I D  D   D  I 
Sbjct: 13  VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 70

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 71  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW ++    +     + + G L
Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 277


>gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 276

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP       ++      G ++ +       VSMGNPHA+  V DD+    + 
Sbjct: 122 PPRFIPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVQTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
 gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
          Length = 282

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 141/286 (49%), Gaps = 21/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C     DN    AI   + +     D ++LI     A  D  
Sbjct: 3   FTKMHGAGNDYVYVN---CFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSIS-- 117
           +R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +     DG I   
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKV 117

Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175
            V+MG P L    IP+A    +    +    P+N L    N   VSMGNPH + FV DD+
Sbjct: 118 RVNMGVPRLKRAEIPMA---GEPADGQIVSQPLNILHTTFNITCVSMGNPHCVIFV-DDV 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA
Sbjct: 174 ESFQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 T + +   + GG L +EW D+  ++MTG A + + G++D+
Sbjct: 234 GALNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDL 279


>gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D+K   L+   + +D + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLINENLICN--LVSIGNPHCIIKVQS-IKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 287

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 13  LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 72

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 73  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 132

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP       ++      G ++ +       VSMGNPHA+  V DD+    + 
Sbjct: 133 PPRFIPAEIPFVADAQALNYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVQTAPVH 186

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 187 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 246

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 247 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287


>gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 276

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/287 (36%), Positives = 146/287 (50%), Gaps = 22/287 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           G P L  + IP      A+S+  +D D    G    L       VSMGNPHA+  V DD+
Sbjct: 121 GPPRLVPEEIPFQAAEQAKSY-SLDAD----GQTVELA-----AVSMGNPHAVLRV-DDI 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            +  + + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA
Sbjct: 170 NNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVA 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +      +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 230 AISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14]
 gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14]
          Length = 276

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+     + ++          LF       SMGNPH +  V DD+   D+ +
Sbjct: 123 PIFEPNKIPMKAK--QAEKTYILRAGEQTLFCG---AASMGNPHCVT-VVDDVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W  +   +FMTG A   ++G+ 
Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666]
 gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666]
          Length = 299

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 143/295 (48%), Gaps = 24/295 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           ++ F KM+G GN  +++D      N+++     L+   + HF    DQI+ +       +
Sbjct: 10  LIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLA---DRHFGVGADQILSVRPSPGEGI 66

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG EV+ CGNG RC VRF+  +    + +   +T+ G++  +   DG ++V
Sbjct: 67  DFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTV 126

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF--------VVSMGNPHAIF 169
           DMG P+ +   IP  A          +   P   L L +          V+SMGNPHA+ 
Sbjct: 127 DMGAPVFELARIPFDAAGLTAQPAGSWEKWP---LTLEDKALSATVSIAVLSMGNPHAVQ 183

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            V DD+    +   G L+  H  F + VN    +V S   + LR +ERG G T ACG+ A
Sbjct: 184 LV-DDVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGTGA 242

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           CA+VVA       +  V V+  GG L IEW    +  V MTG A   +E ++++ 
Sbjct: 243 CAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVP 297


>gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
 gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
          Length = 276

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG A   ++G+L
Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
 gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
          Length = 274

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVLQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDG 270


>gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937]
 gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937]
          Length = 274

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 132/277 (47%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F     ++ +I     H  L     VSMGNPH +  V D++    + 
Sbjct: 121 PNFEPQQVP----FRAAKPEKTYILRAAEHTVLCG--AVSMGNPHCVIQV-DNVDTAPVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 TLGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H +FMTG A   ++G
Sbjct: 234 LAADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDG 270


>gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
 gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
          Length = 281

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 149/281 (53%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F     +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFIAEQPEALYTLELANDRNISIDVVNMGNPHAVTIVPDVLTA-DVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            + +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12]
          Length = 275

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/277 (32%), Positives = 132/277 (47%), Gaps = 10/277 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHWLIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 271


>gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4]
          Length = 289

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D         +DA + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P   S     R   D     PVN    R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGA-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 238 GIRRGQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
 gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
          Length = 274

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ+++I    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVS+GNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSIGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 275

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 16/280 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS+V  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P     +K ++          +      VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGC 238
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V   +  G 
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           L +T   V V++ GG L I W      +FMTG A   ++G
Sbjct: 235 LAET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 271


>gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91]
 gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
 gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
          Length = 289

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  +   P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1]
 gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1]
          Length = 284

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++            + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHY 178
           P+ +   IP+A   D    +   I   P+N +  R   V  VSMGNPHAI F    +  +
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLN-INNRRVLVSLVSMGNPHAIHFCTKPVEEF 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  
Sbjct: 178 PLGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQI 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           L    + V +K+ GG L +EW  ++ V++TG+A+        I TG+W+K
Sbjct: 238 LGYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEI-------IYTGEWLK 280


>gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12]
 gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12]
          Length = 280

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 27/291 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDA 58
           M+ F KM G+GN  +V+D  G   N+  + + I  L+   N H    FDQ++L+    D 
Sbjct: 1   MIHFTKMHGLGNDFMVVD--GVTQNVFFSPEQIKRLA---NRHFGIGFDQLLLVEPPYDP 55

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
            +D   RI N DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  RDG++
Sbjct: 56  DLDFHYRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNV 115

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFF 170
           +V+MG PIL+   IP    F+    ++ ++   +        FL     VS+GNPH +  
Sbjct: 116 TVNMGIPILEPSKIP----FNAKRAEKTYLLQTDTAESKMQTFLCG--AVSLGNPHCVLD 169

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VE D+   D+   G LL +H  F +GVN+   +V +   + LR +ERG   T ACG+ AC
Sbjct: 170 VE-DVQATDVEGIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGAC 228

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           A+ V      K +  V V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 229 AAAVVGQLQGKLDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279


>gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A]
          Length = 271

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 39/290 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R    +    AI           D ++LI     A  D
Sbjct: 2   TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119

Query: 116 ISVDMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           ++VDMG P     +DW K  P   +                        VSMGNPH + F
Sbjct: 120 VTVDMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTF 156

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + DD+   +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ AC
Sbjct: 157 I-DDITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGAC 215

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           A+ VA+       R   V M GG + IEW + + H+ MTG A K ++G++
Sbjct: 216 ATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
 gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
          Length = 272

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 19/280 (6%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  + ++      D+  S AI           D +++I    D   D  +R+ N 
Sbjct: 1   MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDDC--DFKMRMFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGSISVDMGE 122
           DGSE + CGN  RC+ +F+  +    +   T ET+ G+      + ++    +++VDMGE
Sbjct: 59  DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           PI +  LIP       +++      PV  N     N   VSMGNPHA+ F    +   DL
Sbjct: 119 PIFESGLIPTT-----INKPSIINEPVTFNSEIKYNITCVSMGNPHAVIFTTG-IDKLDL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G +     +F    N     V S + + +R WERG G T ACG+ ACASVVA+    
Sbjct: 173 NKIGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            T R  +V++LGG L IEW + +N V++TG A   +EG +
Sbjct: 233 HTGRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272


>gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 32  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 92  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D+K   L+   + +D + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 152 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAPVNI 205

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 206 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329]
          Length = 276

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 138/278 (49%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   D+ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRAGDKTLFCG---AVSMGNPHVVT-VVDDVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V + + + LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           + +V V + GG L I W      +FMTG A   ++G+L
Sbjct: 237 DESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274


>gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
 gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 30/289 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH--DFQDASVD 61
           F KM GIGN  + ++   C +   S+         + HF    D ++LI   D  D  +D
Sbjct: 3   FTKMHGIGNDYVYVN---CFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVADCEMD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDG 114
            +    N DGS+   CGNG+RCV ++      + + + +  T  GI      +  + +  
Sbjct: 60  MY----NLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVA 115

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVED 173
            + V+MG PIL  + IP+  + +++  +  ++ G   H+       VSMGNPHAI ++ D
Sbjct: 116 LVKVNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTYHIT-----AVSMGNPHAIVYM-D 169

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL + D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  
Sbjct: 170 DLRNLDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVA 229

Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           VAS    L   ++ V+VK+LGG L I W+   N V+MTG A   ++G++
Sbjct: 230 VASTLNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEI 278


>gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D+K   L+   + +D + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 P--DFKFYNLSSLQNVLDNN-FSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
 gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
          Length = 275

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 141/280 (50%), Gaps = 9/280 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN  +VID    +  +  + I   +       FDQ++L+    D  +D  
Sbjct: 2   LLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++V+MG
Sbjct: 62  YRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP+ +   +P      +     + +   +   L    V+ +GNPH +    DD+    +A
Sbjct: 122 EPMFEPASVPFKA---QKPEHTYVLRVADETVLCG--VMGLGNPHCVIET-DDVNTAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +A+H  F E VN+   ++ S + + LR +ERGVG T ACGS ACA+ V      K
Sbjct: 176 SLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQDK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             R V V + GG L I W     V MTG A   ++G++ I
Sbjct: 236 LERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQMVI 275


>gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 277

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G + + T  AI           D ++++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSNTCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVDM 120
           IN DGSE + CGNG+RC  ++      + + +FT ET+ G+    L  +      ++VDM
Sbjct: 61  INSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G+P  + K IP+  + DK +D D      VN   +    V+ +G PH   FV DD+    
Sbjct: 121 GKPFFNSKDIPMNVTMDKVIDVDL----DVNGETVTVSSVL-LGVPHTEVFV-DDITKAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS V S   
Sbjct: 175 VTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHKK 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
 gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
          Length = 288

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 154/289 (53%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M    + I  + ++ ++   ++ NT    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++  
Sbjct: 63  -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121

Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    +P L        R+ F     NH ++     VSMGNPHA+ FV DD+
Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYS--NHRYVFTG--VSMGNPHAVIFV-DDV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
 gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
          Length = 276

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 140/280 (50%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + S    T +G +V K   +  I+V+MG 
Sbjct: 65  FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I    V+ LF      VSMGNPH +  V DD+   D+
Sbjct: 123 PEFEPGKIP----FKAKQPEKTYILRTDVHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V       
Sbjct: 175 ETLGPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                V V++ GG L I W      +FMTG A   ++G+L
Sbjct: 235 LLAENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQL 274


>gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
 gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
          Length = 323

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 143/295 (48%), Gaps = 21/295 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VD 61
           +S + F+K +G+GN  ++ID R   + + +        D N       +I         D
Sbjct: 34  ASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPPVGDTD 93

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGNG+RC+ +F+    +   + +   T+ G++  +   DG + VD
Sbjct: 94  LTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVRVD 153

Query: 120 MGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF----- 170
           MGEPIL+   +P   +  +    + +D    G    +       VSMGNPHA+ +     
Sbjct: 154 MGEPILEGAKVPTTLAPTQGSTVVQQDLIVDGKTYKVS-----CVSMGNPHAVIYSCDGD 208

Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            ++ D    DLA  G    ++ +F    N     V +   + +  WERG G T ACG+ A
Sbjct: 209 TIKIDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGA 268

Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           CA VVA     + +R     V + GG L IEW+ ++NH++MTG A+  + G L +
Sbjct: 269 CALVVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323


>gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1]
 gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1]
          Length = 276

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       +       G ++ +       VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQLHSIA-----AVSMGNPHAVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276


>gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
 gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
          Length = 388

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 143/286 (50%), Gaps = 14/286 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQD 57
           +++ F+K +G+GN  L++D R   D      +  + +  +         D ++L     +
Sbjct: 7   AVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALP-PE 65

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDG 114
              +  +RI N DGSE + CGNG+RC+ RFL         +++  ET+ G +V +   DG
Sbjct: 66  GDGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLADG 125

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMGEP L  + +P   +       +  +      F        MGNPH +    ++
Sbjct: 126 MVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAA--AAGMGNPH-LVIPVEE 182

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL  FG LL +HP F    N+   +    + L +R WERG G T ACG+ ACA++V
Sbjct: 183 VEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATLV 242

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A   L  + R+  + + GG L I+W   +NH+FMTG A+  ++G L
Sbjct: 243 ACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288


>gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
 gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
          Length = 288

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 154/289 (53%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M    + I  + ++ ++   ++ NT    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++  
Sbjct: 63  -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121

Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    +P L        R+ F     NH ++     VSMGNPHA+ FV DD+
Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYS--NHRYVFTG--VSMGNPHAVIFV-DDV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
 gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
          Length = 276

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 140/280 (50%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G +V     D  ++V+MG 
Sbjct: 65  FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I   +   LF      VSMGNPH +  V DD+   D+
Sbjct: 123 PEFEPNKIP----FKAKQTEKTYILRADEKTLFCG---AVSMGNPHVVT-VVDDVNTTDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W      +FMTG A   ++G+L
Sbjct: 235 LLDENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQL 274


>gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
 gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
          Length = 269

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 35/291 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       I   A  A+  +  +T      LI        D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVD--ATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172
           ++VDMG P               ++ +    G       + PF    VSMGNPH + FVE
Sbjct: 120 VTVDMGSP---------------LETEEIQWGG------KYPFRSTKVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+   +L   G  L  HP+F +  N+  A++ + +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 -DITRINLPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            VA+     T R   V M GG + IEW + + H+ MTG A K ++G+++ K
Sbjct: 218 AVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIEDK 268


>gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7]
 gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7]
          Length = 277

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 21/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEGIGN  +  D  G +  I  D    +   D  HF    D +++I        D  
Sbjct: 5   FTKMEGIGNDYIYFD--GINQEIPMDKEFIMKISDR-HFGIGSDGMIVI--LPSDQYDFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE   CGNG+RC  +F+       +     ET  G+   +   DG       
Sbjct: 60  MRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV D L  
Sbjct: 120 VNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVSD-LDT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A  
Sbjct: 175 LDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACY 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             H T+  V+V++LGG L IE+ D   + M+G A   + G + I
Sbjct: 235 LNHYTDSKVTVELLGGCLEIEYVDET-IMMSGPAANVFNGTIKI 277


>gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7]
          Length = 276

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A    +      FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  + 
Sbjct: 122 PP----RFVPEEIPFEAAEQATCYTVDVDGQSIEM-AAVSMGNPHAVLRV-DDINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 274

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 16/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCL 239
            G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V   +  G L
Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +T   V V++ GG L I W      +FMTG A   ++G
Sbjct: 235 AET---VRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 270


>gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
 gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
          Length = 289

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 140/292 (47%), Gaps = 19/292 (6%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           + F KM G GN  +V+D        +T   + AL+   + HF    DQ++L+        
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALA---DRHFGIGADQLLLVEKPTVDGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       + S   E    ++      +G + V
Sbjct: 60  DFKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVV 119

Query: 119 DMGEPILDWKLIPL-ARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P+ +   +P  A   D  +   D     PVN +  R   VVSMGNPHA+  V DD 
Sbjct: 120 DMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGV-TRWISVVSMGNPHAVQIV-DDA 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A
Sbjct: 178 EAFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKT 283
                + +  V+V   GG L I W+    +   + M G A   +EG +++  
Sbjct: 238 GIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
 gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
          Length = 355

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 17/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMR-GCHDNITSDA-INALSTDDNTHF----DQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R G  D   ++   N +    +  F    D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E + CGNG+RC+ R+L           +  ET  G++  +   +G 
Sbjct: 60  DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119

Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + VDMG P L+   IP        + R    I  V      N   V MGNPH +  VED 
Sbjct: 120 LRVDMGAPFLESASIPTTLEPLAGLPRGALEIDGVPL----NVASVGMGNPHVVVPVED- 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L       +G  L  HP+F    N+   +V + + L++R WERG G T ACG+ ACA++V
Sbjct: 175 LSRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           A+  L   +    V + GG LLI W   +  V MTG A+  ++G
Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDG 278


>gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121]
 gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121]
          Length = 269

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 135/275 (49%), Gaps = 14/275 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68
           M G+GN  +V+D          D I  L  D +T   FDQ++++    +  +D   RI N
Sbjct: 1   MHGLGNDFVVVDAVSRKVYFNKDMIARLG-DRHTGIGFDQLLVVEPPTNPDMDFRYRIFN 59

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           CDG+EV+ CGNG RC   F+  +  +       ET  G +  +   +G ++VDMG P  +
Sbjct: 60  CDGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFE 119

Query: 127 WKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
              +P    F       F+  PV    +   P  VS+GNPHA+  V D+L    +   G 
Sbjct: 120 PADLP----FTGTANGAFYDIPVAGESYPITP--VSVGNPHAVHKV-DELSDEYVERIGE 172

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H +F   VN+   ++ S   ++LR +ERGVG T ACG+  CA+VVA          
Sbjct: 173 AIESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAK 232

Query: 246 VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           V   +LGG L IEW  +   + MTG   K +EG++
Sbjct: 233 VKANLLGGELTIEWQGEGQPILMTGPTAKVFEGQI 267


>gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens]
          Length = 311

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 137/289 (47%), Gaps = 20/289 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65
           F+K +G+GN  L++D R       S A  A   D N     D ++ +   ++ + D  + 
Sbjct: 27  FSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGENGA-DFKMT 85

Query: 66  IINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGILVAKENRDGSISV 118
           I N D SE + CGNG+RC+ R+L             + FT  T  G +V     DG I+V
Sbjct: 86  IYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLITV 145

Query: 119 DMGEPILDWKLIPLARSFDKMDR---DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEP L    +P A +    DR        G   +        VSMGNPH++ FV DD 
Sbjct: 146 DMGEPELAGPKVPCALAPTDGDRVVDAALEAGGATYAVT----AVSMGNPHSVAFV-DDA 200

Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              DL   G  +  +   F E VN     V     +++  WERG G+T ACG+ ACA  V
Sbjct: 201 KAVDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGV 260

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           A     +T+R   V + GG L IEW + +N V+MTG A+  + G   + 
Sbjct: 261 AGVLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGSAPLP 309


>gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
 gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
          Length = 283

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 27/291 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  + ++          + I  L +D   HF    D ++LI   + A  DA 
Sbjct: 3   FTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDR--HFGIGGDGLILITPSEVA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDG---SIS 117
           +R+ N DGSE + CGNG+RCV +++      K+++   ET  G+L  + E  +G    + 
Sbjct: 59  MRMFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL+ K IP     + +   +  I   +     +   VSMGNPH + FVE     
Sbjct: 119 VNMGQPILEGKKIPTIFDSNPVVNQKIEIAGQSF----DVTCVSMGNPHCVIFVEKATDE 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  + +   F   VN+    V S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 175 LVL-KIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287
              +T R +   +LGG L +EW++ +N V+ TG       G  ++ TG+W+
Sbjct: 234 LTGRTKRKILNHLLGGDLQLEWNEADNCVYKTG-------GATEVFTGEWM 277


>gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
 gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
          Length = 279

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 141/288 (48%), Gaps = 23/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF----DQIMLIHDFQDAS 59
           ++F KM GIGN  + ID   C        DA        + H+    D I+LI   + A 
Sbjct: 3   LNFTKMHGIGNDYIYID---CFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113
            D  +R+ N DGSE + CGNG+RCV ++       K      ET+RG+L A    K +  
Sbjct: 59  -DVTMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S+ ++M  PIL+   IP       +  +        + F      VSMGNPH + FV D
Sbjct: 118 DSVEINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYFT----CVSMGNPHCVIFV-D 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ +  +   G+ +  +PMF    N+   +V +   +  RTWERG   T ACG+ A A  
Sbjct: 173 DVKNMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVC 232

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           VA     +T+  +   +LGG L++ + DNN VFM GEA+  + G +++
Sbjct: 233 VAGFISKRTDNIILNHLLGGDLILTYKDNN-VFMKGEARYAYRGYVEL 279


>gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto
           Rico]
          Length = 265

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 131/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R   + +  D             DQ++ I D  D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW ++    +     + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 265


>gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
 gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
          Length = 271

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 144/280 (51%), Gaps = 18/280 (6%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI   +    D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIG--KSTKADFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      ++VDM   
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDM--- 115

Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             D  L+  +R  +  D         V+    +  FV  MGNPH + F+ DD+ + +L +
Sbjct: 116 --DLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVC-MGNPHLVIFI-DDIKNVNLPA 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F +  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK 
Sbjct: 172 IGPKLENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKA 231

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 232 GRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
 gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
          Length = 280

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 148/281 (52%), Gaps = 16/281 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +DF KM G+GN  + I D  G   + T+ A    +       D +++I D + A  D  +
Sbjct: 1   MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  +  +++K FT ET  GI+     V  +N+   I+
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG P  +   IP+  +  ++  +   +   N         + MG PH + +V DD+  
Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGENWKVTS----LLMGVPHTVTYV-DDVDT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G L  KH  F +  N++ A+     ++ +RTWERG G T ACG+ +C+  VAS 
Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
              +T R V +++  G L IE+  ++ +V+MTG A   + G
Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTG 274


>gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 282

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 146/282 (51%), Gaps = 21/282 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++  G  + I + +  A+   D  HF    D ++LI+  + A  D  
Sbjct: 3   FTKMQGLGNDYVYVN--GFTERIENPSEVAVKVSDR-HFGIGSDGLILINPSKVA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNGMRCV +++       +     ET+ GI    L  +  +   + 
Sbjct: 58  MEMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P L   LIP+    + +  +   +    +        VSMGNPH + ++ DD+ H
Sbjct: 118 VDMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYM-DDIEH 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N   A V   +++ +R WERG G T ACG+ ACA  V+S 
Sbjct: 173 LDIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
               T   V+V++LGG LLI+W  + + V+MTG A+  ++G+
Sbjct: 233 LNGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGE 274


>gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 15/281 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      + T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDMG PIL  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120

Query: 128 KLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           + +P      L ++          I    H       V+SMGNPHA+  V  D  H  + 
Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGETHWI----SVLSMGNPHAVQVVA-DADHAPVR 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+      
Sbjct: 176 EDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               + V+  GG L I W  DN+ V +TG A   +EG++++
Sbjct: 236 LASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276


>gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 274

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 152/287 (52%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VI+     +N+    +     D   HF    D ++++        D  
Sbjct: 3   FTKMHGLGNDFIVIE---ALENVDYSELAIKLCD--RHFGIGADGLLVVE--PSGIADIR 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSIS 117
           +RI N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +   EN +  S+ 
Sbjct: 56  MRIFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVK 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDD 174
           V M  PI +   IP+     K D+ +F   PV     ++      V  G PH I FVE  
Sbjct: 116 VYMSNPIFEASKIPI-----KSDKQKFINEPVKIDGKVYKLTSLRV--GVPHTIVFVES- 167

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS V
Sbjct: 168 LDENMIKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAV 227

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS  L KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 228 ASAVLGKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR]
 gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR]
          Length = 275

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 145/279 (51%), Gaps = 11/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F+KM G+GN  +V+D    +  +  D I   + D +T   FDQ++L+    D  +D 
Sbjct: 2   LLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWA-DRHTGIGFDQMLLVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++VDM
Sbjct: 61  HYRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP+ +    P A  F     ++ ++  V    +    V+ +GNPH +  V D++    +
Sbjct: 121 GEPLFE----PAAVPFKAQKAEQTYVLRVKEETVLC-GVLGLGNPHCVIAV-DNVDTTPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  LA H  F E VN+   +  S + + LR +ERGVG T ACGS ACA+ VA     
Sbjct: 175 ETLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             N  V V + GG L+I W     V MTG A+  ++G++
Sbjct: 235 LLNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273


>gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
 gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
          Length = 271

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 39/290 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R    +    AI           D ++LI     A  D
Sbjct: 2   TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119

Query: 116 ISVDMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           ++VDMG P     +DW K  P   +                        VSMGNPH + F
Sbjct: 120 VTVDMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTF 156

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + DD+   +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ AC
Sbjct: 157 I-DDITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGAC 215

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           A+ VA+       R   V M GG + +EW + + H+ MTG A K ++G++
Sbjct: 216 ATAVAAFINGLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265


>gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22]
 gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22]
          Length = 271

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 137/287 (47%), Gaps = 39/287 (13%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D  R    +    AI           D ++LI     A  D  +
Sbjct: 5   IKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +++V
Sbjct: 63  RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVSTVTV 122

Query: 119 DMGEPI----LDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           DMG P     +DW K  P   +                        VSMGNPH + F+ D
Sbjct: 123 DMGSPQETGEIDWGKKYPFQST-----------------------KVSMGNPHLVTFI-D 158

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ 
Sbjct: 159 DITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATA 218

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           VA+       R   V M GG + IEW + + H+ MTG A K ++G++
Sbjct: 219 VAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
 gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
          Length = 274

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 22/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP------FVVSMGNPHAIFFVEDDLY 176
           P  + + +P    F  +  ++ +I       LR         VVSMGNPH +  VE ++ 
Sbjct: 121 PNFEPQQVP----FRAVKPEKTYI-------LRAAERTVLCGVVSMGNPHCVLQVE-NVD 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V   
Sbjct: 169 SASVEELGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
                    V V++ GG L I W      +FMTG A   ++G
Sbjct: 229 IQQGLLAADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDG 270


>gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
 gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
          Length = 284

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 151/281 (53%), Gaps = 24/281 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60
           + F KM GIGN  + +D+     N   D    L+    N H     D +++I   + A  
Sbjct: 3   IAFTKMHGIGNSYIYLDLF--QHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDG 114
           D  +R+ N DGSE  +CGNG+RCV +++  R  ++++  T ET  GI++A+    +NR  
Sbjct: 59  DCGMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVI 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMG+P+L  K IP+  + +++  +     P   L +   F   +GNP+A+FFV + 
Sbjct: 119 EVIVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLVTALF---LGNPNAVFFV-NA 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L + G++ A    F    N+    +   ++L    WERG G+T ACG+ ACA+VV
Sbjct: 175 IEQAPLRTLGDI-ANDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVV 233

Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           A+   G   K    V V++ GG L+I W DN+H++M G A+
Sbjct: 234 AAILNGFCQKGEEIV-VQLSGGDLVIRWADNDHIWMRGPAE 273


>gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
 gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
          Length = 281

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 17/283 (6%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+GIGN  + I+ M     N    A++   +D +       LI        D  +++
Sbjct: 5   FYKMQGIGNDYVYINAMETKVPN--PSALSKTVSDRHFGIGSDGLILLLPSTVADVRMQM 62

Query: 67  INCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDM 120
            N DGSE + CGNG+RCV  + +     K +S T ET+ GI    L  ++ +  S+ VDM
Sbjct: 63  FNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSVCVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P ++ + IP+  +  +M      +    +    +   VSMGNPHA+ F  D +   +L
Sbjct: 123 GSPSMEIEKIPVRYTERRMVEAPLTVNGTTY----SVTCVSMGNPHAVIFT-DGIDEMEL 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G     H +F E VN           L +R WERG G T ACG+ ACA VVA+    
Sbjct: 178 EKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAACLTK 237

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  R   V V + GG L I W DN+ V+MTG A+  + G ++I
Sbjct: 238 RCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279


>gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 282

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 144/291 (49%), Gaps = 31/291 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F KM G+GN  +VID      +  S  I A + D +T   FDQ++L+        D  
Sbjct: 4   LKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWA-DRHTGIGFDQLLLVERPTSEQADFR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++V+MG
Sbjct: 63  YRIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMG 122

Query: 122 EPILDWKLIPL---------ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +P      IP             +D ++D     +G VN           MGNPHA+  V
Sbjct: 123 QPRFRPSEIPFLPLENTSGETLQYDVRLDGGNVTVGCVN-----------MGNPHAVLTV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E+      +A  G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA
Sbjct: 172 ENT-ESAAVAELGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACA 230

Query: 232 SVVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + V    +G L +    + V + GG LLI W     VFMTG A+  +EG+L
Sbjct: 231 AAVYGVRAGWLDE-GEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280


>gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E]
 gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 274

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +     + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG I V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120

Query: 123 PILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P+ +   IP +A  F+K    R  I  V          VSMGNPH    V DD+   ++ 
Sbjct: 121 PVWEPAKIPFIANKFEKNYILRTDIQTVLC------GAVSMGNPHCTLVV-DDVETANVT 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+         
Sbjct: 174 ELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274


>gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400]
          Length = 282

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 143/289 (49%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C +    +         N +F    D ++LI     A  D  
Sbjct: 3   FTKMHGAGNDYVYVN---CFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116
           +R+ N DGSE + CGNG+RCV ++      + +K  T ET  G+L  +     + R   +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLR-NPFVVSMGNPHAIFFVEDD 174
            V+MG+P L    IP+         D   +G P+N L    N   VSMGNPH + FV DD
Sbjct: 118 RVNMGKPRLTRAEIPMLGD----PGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFV-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + ++ +  +G L+  H MF    N+   ++ S   +  RTWERG G T ACG+ A A  V
Sbjct: 173 VENFQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           A      T + +   + GG L +EW ++  ++MTG A + + G++++ T
Sbjct: 233 AGALNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGT 281


>gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 276

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  +P F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 274

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 140/260 (53%), Gaps = 4/260 (1%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA +   N 
Sbjct: 7   KMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVEFFNS 64

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P ++W+ 
Sbjct: 65  DGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKVNWQE 124

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL++  D  D  +  I   N+        +++GNPH IFFV DD+  +DL + G  +  
Sbjct: 125 IPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGPKIEN 182

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   +   ++
Sbjct: 183 HPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTDIE 242

Query: 250 MLGGGLLIEWHDNNHVFMTG 269
            + G L I   + N + M G
Sbjct: 243 FVLGSLTISIDERNSIHMKG 262


>gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
 gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
          Length = 284

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 19/277 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           +R+ N DGSE ++CGNG+RCV ++      +  + F  ET+ G++ A  +  G+    ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG PIL  + IP+   S D++  +    G      L+    VSMGNPH +F+V +D+ 
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER---LKGT-AVSMGNPHVVFYV-NDIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S
Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237

Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEA 271
               KT +     V + GG L I W +  +V MTG A
Sbjct: 238 VLNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPA 274


>gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
 gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
          Length = 280

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 140/293 (47%), Gaps = 33/293 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S+  F+KM G+GN  +V++      +     I AL+       FDQ+++I    DA+ D 
Sbjct: 2   SIRSFSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDY 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR------------MKRKSFTFETIRGILVAKE 110
             RI N DGSEV+ CGNG RC  ++L               +KR S T      I     
Sbjct: 62  AYRIYNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSIT------IAYVGT 115

Query: 111 NRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHA 167
           + DGS    VDMGEP  D+        F     +R +  PV+         +VSMGNPHA
Sbjct: 116 DSDGSEQYRVDMGEP--DFT------PFTPAQTERLY-QPVSAAGETLEMGIVSMGNPHA 166

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  V DD+    +A+ G  L +HP+F   VN    ++     + LR +ERG G T ACG+
Sbjct: 167 VCVV-DDVATAPVAAVGAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGT 225

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            ACA+V         +R V V++  G L I+W      ++MTG A   + G+L
Sbjct: 226 GACAAVAVGIMRGLLDREVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278


>gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
 gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
          Length = 282

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 144/286 (50%), Gaps = 18/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +++         +++ +       + HF    D ++L+   + A  D  
Sbjct: 3   FYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--DLK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117
           +RI N DGSE + CGNG+RC  +       + +     ET+ GI+V +    ++++  I 
Sbjct: 61  MRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSLIR 120

Query: 118 VDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           V+MG P L  + IP+      D +   R  I   N     N   VSMGNPH + F++ D+
Sbjct: 121 VNMGTPNLKPESIPILGFEGKDSVINQRIQI---NDKTFLNVTCVSMGNPHCVIFMDYDI 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            ++ +      +     F +  N+  ARV S   ++LR WERGVG T ACG+ ACA+ VA
Sbjct: 178 KNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATAVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +     TN  V++ + GG L IE+  NN VFMT  A   +EG ++I
Sbjct: 238 AKLNGFTNGNVNIHLPGGILHIEYETNN-VFMTATATLVFEGIIEI 282


>gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642]
          Length = 276

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 144/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPEEIPFEAAEQASCYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 276

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 144/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   + +   VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPEEIPFEAAEQATCYTVDVDGQHV-DMAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
 gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
          Length = 288

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 153/289 (52%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M    + I  + ++ ++   ++ NT    D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVNM--FEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPVK- 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS-- 117
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++  
Sbjct: 63  -MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLA 121

Query: 118 -VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    +P L        R+ F     NH +      VSMGNPHA+ FV DD+
Sbjct: 122 KIDMGAPRLTRAELPMLGEGETPFIREDFLYN--NHRYAFT--AVSMGNPHAVIFV-DDV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 237 AVLNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
 gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
          Length = 277

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 140/278 (50%), Gaps = 13/278 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  +V++      +  + A N          D ++ +     A V   +RI 
Sbjct: 3   FVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRADVQ--MRIF 60

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDMG 121
           N DGSE + CGN +RCV ++   R  ++R+    ET+ G+    L    +R   ++VDMG
Sbjct: 61  NADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EPIL+   IP+A +       R         F      VSMGNPHA+ FV DD+   D+ 
Sbjct: 121 EPILEPGRIPVALAEGGTPSGRVEAAGREWAFT----AVSMGNPHAVIFV-DDVEGTDVR 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ +  + +F   VN+          + +R WERG G T ACG+ ACA+VVA     +
Sbjct: 176 GVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALEGR 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + R V V + GG L IEW ++  V+MTG A + + G++
Sbjct: 236 SGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273


>gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
 gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
          Length = 289

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 146/285 (51%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + ++   C      +         N +F    D +++I+    A  D  
Sbjct: 15  FTKMQGLGNDYVYVN---CFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA--DFE 69

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++      +++  + ET+ GI    L  ++ +   + 
Sbjct: 70  MEMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKVKLVK 129

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L  + IP+    +++  +  ++    +        VSMGNPHA+ +VED +  
Sbjct: 130 VDMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVED-VKG 184

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G     H  F   VN    +V    ++++R WERG G T ACG+ ACA  VA  
Sbjct: 185 LDIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVAVACI 244

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               T   V+VK+LGG L IEW  + + ++MTG A+  ++G++++
Sbjct: 245 LNGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289


>gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
          Length = 295

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 133/270 (49%), Gaps = 17/270 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIH----DFQDASVDA 62
           F KM G+ N  +++D R         D +   ST+     +Q++ I     + + A   A
Sbjct: 19  FVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAYA 78

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DG EV +CGN  RC+   L    + +    ET  G+L  +      ISV +G 
Sbjct: 79  TMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLGP 138

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             ++W+ +P +R  D +     HI P+    L +   + +GNPH +FFV D L H D+  
Sbjct: 139 ISVNWQQLPTSREVDTL-----HI-PLKSGPLSDGVALYIGNPHVVFFV-DRLVHDDIPL 191

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCL 239
           F   +   P+F EGVN+ +A V    S+ L  WER   LT ACG+ AC +  A+   G +
Sbjct: 192 FAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGFV 251

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           + T   V V +  G L IE  +++ V MTG
Sbjct: 252 NSTK--VKVYLPAGELQIELIEHDMVVMTG 279


>gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 277

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G + + T  AI           D ++++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSNTCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVDM 120
           IN DGSE + CGNG+RC  ++      + + +FT ET+ G+    L  +      ++VDM
Sbjct: 61  INSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G+P  + K IP+  + DK +D D      VN   +    V+ +G PH   FV DD+    
Sbjct: 121 GKPFFNSKDIPMNVTMDKVIDVDL----DVNGETVTVSSVL-LGVPHTEVFV-DDITKAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS + S   
Sbjct: 175 VTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHEK 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146]
 gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146]
          Length = 274

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 131/277 (47%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + FAKM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQLLVVEPPYDPDLDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    R+     T    +      D  ++V+MG
Sbjct: 60  YRIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   IP    F     ++ +I  V    +     VSMGNPH +  VED +    + 
Sbjct: 120 EPQFEPGRIP----FKAAKAEKTYILRVAQQTVLC-GAVSMGNPHCVLQVED-ISRAQVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LLGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  V V + GG L I W      + MTG A   ++G
Sbjct: 234 LDEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDG 270


>gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b]
 gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b]
          Length = 274

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P  R+    +     +     +F      VSMGNPH +  VE ++    + +
Sbjct: 121 PNFEPQHVPF-RANKAENLYLLRVAEQTVMF----GAVSMGNPHCVIQVE-NVKTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V + GG L I W      +FMTG A   ++G
Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDG 270


>gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
 gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
          Length = 261

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 126/241 (52%), Gaps = 13/241 (5%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101
           FDQ++++    D   D   RI N DGSEV+ CGNG RC  RF+  RMK    + S +  T
Sbjct: 29  FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKTSISVST 86

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            +G ++ K   D  I+V+MGEP+ +   IP    F     ++ ++  V+   L +   VS
Sbjct: 87  KKGKMILKVEDDDQITVNMGEPVFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVS 141

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  V DD+  YD+  +G L+  H  F E VN    ++ S   + LR +ERG G 
Sbjct: 142 MGNPHCVT-VVDDVDAYDVDKYGPLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGE 200

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           T ACGS AC +V            V V + GG L I W  +   +FMTG A   ++G+L 
Sbjct: 201 TQACGSGACGAVAVGIMQELLGEEVKVSLPGGDLYIVWQGSGKPLFMTGPATHVYDGQLS 260

Query: 281 I 281
           I
Sbjct: 261 I 261


>gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82]
          Length = 274

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC   F  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 270


>gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
 gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
          Length = 279

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  +VID    + ++++  I  L+        DQ++++        D   
Sbjct: 3   VRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS-FTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGNG RC  RF+   R+  K     +   G++      DG I  +MG 
Sbjct: 63  HIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI     +P    FD       +   V+   L    V+SMGNPHA+  VE+ +    +AS
Sbjct: 123 PIFTPSAVP----FDTDKEQLEYTLTVSDTSLAM-GVLSMGNPHAVIIVEN-VQTAPVAS 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F++ VN+   ++ S + + LR +ERG G T ACG+ ACA+VV     +  
Sbjct: 177 LGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKNLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           N AV+V + GG L I W  N    +++G     +EG +++
Sbjct: 237 NNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276


>gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 271

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 141/287 (49%), Gaps = 27/287 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASV 60
           +++F KM G+GN  +++D         ++ I  L+   N H    FDQ++L+      +V
Sbjct: 2   LINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLA---NRHLGIGFDQLLLVETSNTKNV 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG EV+ CGNG RC   F++ +          ET  GI+    N D ++ V
Sbjct: 59  DFRYVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRV 118

Query: 119 DMGEPILD----WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           DMG+P  +      L+P   ++ +++   F +G            VS+GNPH +  VED 
Sbjct: 119 DMGKPSFNPADILLLVPQQSTYYQIEG--FDLG-----------AVSIGNPHCVMLVED- 164

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D++S    + +  +     N+   ++ +   ++LR +ERG G T ACGS ACA+VV
Sbjct: 165 VNTVDVSSIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVV 224

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                      V   + GG  LIE+    HVF++G  +  +EGK++I
Sbjct: 225 YGVEQGLLKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271


>gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 274

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 139/260 (53%), Gaps = 4/260 (1%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA I   N 
Sbjct: 7   KMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIEFFNS 64

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P ++W+ 
Sbjct: 65  DGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKVNWQE 124

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL++  D  D  +  I   N+        +++GNPH IFFV DD+  +DL + G  +  
Sbjct: 125 IPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGPKIEN 182

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   +   ++
Sbjct: 183 HPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKTTDIE 242

Query: 250 MLGGGLLIEWHDNNHVFMTG 269
              G L I   + N + M G
Sbjct: 243 FALGSLTISIDERNSIHMKG 262


>gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103]
 gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103]
 gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355]
          Length = 282

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 129/276 (46%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P  R+    +     +     +F      VSMGNPH +  VE       +  
Sbjct: 129 PNFEPQQVPF-RANKAENLYLLRVAEQTVMF----GAVSMGNPHCVIQVEST-KTAQVEL 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    + S E + LR +ERG G T ACGS ACA+V         
Sbjct: 183 LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 242

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           ++ V V + GG L I W      ++MTG A   ++G
Sbjct: 243 SQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDG 278


>gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
 gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
          Length = 281

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 135/283 (47%), Gaps = 17/283 (6%)

Query: 8   FAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           F KM G+GN  +VID     +      + +D I  L+       FDQ++++   Q    D
Sbjct: 5   FTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GDAD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI+N DGSEV  CGNG RC  RF+  +    +KS   ET  G +      D  I+VD
Sbjct: 64  FRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQITVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178
           MG P      IP+     K + D + +  V+     +   V +GNPH    VE+ D    
Sbjct: 124 MGAPRWAPDAIPMTA---KAEADNYFL--VSGTQAWDVGAVGLGNPHCTLLVENVDTAPV 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D  + G LL  H  F E  N+   ++ S   + LR +ERG G T ACGS ACA+VV    
Sbjct: 179 D--TVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQR 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V + GG L + +     + MTG A   ++G ++I
Sbjct: 237 RDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEI 279


>gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
 gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
          Length = 284

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 145/277 (52%), Gaps = 19/277 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           +R+ N DGSE ++CGNG+RCV ++      +  + F  ET+ G++ A  +  G+    ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG PIL  + IP+   S D++  +    G      L+    VSMGNPH +F+V +++ 
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER---LKGT-AVSMGNPHVVFYV-NNIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S
Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237

Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEA 271
               KT + V   V + GG L I W +  +V MTG A
Sbjct: 238 VLNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPA 274


>gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont]
          Length = 274

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 130/277 (46%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  D + +PL A   + +   R  +     +F      VSMGNPH +  VE  +    + 
Sbjct: 121 PNFDPQQVPLRANKAENLYLQR--VAEQTVMF----GAVSMGNPHCVIQVE-SVKTAAVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 TLGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGI 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               V V + GG L I W      +FMTG A   ++G
Sbjct: 234 LAVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDG 270


>gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
 gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
          Length = 270

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 35/286 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D            AI           D ++LI +   A  D  +
Sbjct: 5   IKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE   CGNG RCV +++       +   T +T+ GI + K + +G    +++V
Sbjct: 63  RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVTAVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P+                      G V H   + PF    VSMGNPH + FV DD+
Sbjct: 123 DMGSPL--------------------ETGEV-HFEDKYPFRSTRVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  H +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TQINLPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +     T R   + M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 221 AFINELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIE 266


>gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
 gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
          Length = 282

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 32/292 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  + +D       H    + A +A  T   +  D ++LI     A  D 
Sbjct: 5   IKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGS--DGLVLIGSSDKA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE + CGN  RC+ ++L       +     +T+ GI    L   + +  S+
Sbjct: 61  SMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNSV 120

Query: 117 SVDMGEPI-----LDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG P       D K   P+     ++D +R+ +G            VSMGNPH + F
Sbjct: 121 TVDMGIPADEPADYDGKGAKPMKEQPIEVDGERY-VGTT----------VSMGNPHLVIF 169

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V +D+   DL   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ AC
Sbjct: 170 V-NDIEAIDLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGAC 228

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A+ VA+    +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 229 ATAVAAFLTGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
 gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
          Length = 281

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   + +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
 gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
          Length = 278

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + +D   C      +  +      N +F    D ++LI     A V   
Sbjct: 3   FTKMHGAGNDYVYVD---CFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHVR-- 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116
           +R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +      N+   +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175
            V+MG+P L    IP++   D     R    P+N L    N    SMGNPH + FV DD+
Sbjct: 118 RVNMGKPRLTRGEIPMSGPADA----RVVSEPLNILHTTFNITCASMGNPHCVIFV-DDV 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            ++ +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA
Sbjct: 173 DNFQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 T++ +   + GG L +EW ++  ++MTG A + + G++ I
Sbjct: 233 GALNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278


>gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 276

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
 gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
          Length = 360

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 136/299 (45%), Gaps = 42/299 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIH 53
           M+ F+K +G+GN  ++++ R      +     A+   D     ++           +++ 
Sbjct: 1   MLQFSKYQGLGNDFILLEGR------SGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVA 54

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKE 110
               A+ +  +RI N DGSE + CGNG+RC+ RFL         +++  ET  G+++   
Sbjct: 55  LPPAAAGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFD---------KMDRDRFHIGPVNHLFLRNPFVVS 161
             DG I VDMG P L  + +P A             ++D  R  +               
Sbjct: 115 LADGQIQVDMGRPFLQPEQVPTALPVGAAGLPQGEVELDGRRLALA-----------AAG 163

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  V DDL       +G  L   P+F    N+   +V S   L +R WERG G 
Sbjct: 164 MGNPHVVVTV-DDLDQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGP 222

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA++VA+  L        V + GG L I W D +  + MTG A+  ++G L
Sbjct: 223 TLACGTGACATLVAAHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281


>gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 251

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 138/264 (52%), Gaps = 21/264 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN  ++ID R  ++       N     D    DQ+++I      + + F+ I N D
Sbjct: 1   MHGTGNSFVIIDSRSANN----LDWNYRQIADQGSCDQVIIIT--MSNAANCFMHIYNAD 54

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-ILVAKENRDGSISVDMGEPILDWKL 129
           GS  + CGN  RCV   +      +  T E I   IL   +  D SI V+MG+P+L W  
Sbjct: 55  GSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWNE 114

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D +        P+    L+ P  V++GNPH +FFV D++    L + G  L  
Sbjct: 115 IPLSCECDPLYL------PIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLGPKLEN 167

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTNRAV 246
           H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS    CL    +  
Sbjct: 168 HELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCL--ATKQT 225

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGE 270
           SV + GG LLIEW  N  + MTG+
Sbjct: 226 SVHLPGGHLLIEWSKN--ILMTGD 247


>gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 276

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 143/283 (50%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G P    + IP  ++  +  R    + G    L       VSMGNPHA+  V DD+ +  
Sbjct: 121 GPPRFAPEDIPF-QAAQQATRYSVEVDGQTVELA-----AVSMGNPHAVLRV-DDINNAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+   
Sbjct: 174 VHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQ 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 234 GWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
 gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
          Length = 273

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 140/285 (49%), Gaps = 25/285 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62
           F KM+G GN  +VID R   DN        L     N HF    D I+++   + A +  
Sbjct: 3   FIKMQGTGNDFVVIDDR---DNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQIKM 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116
            I  IN DGS    CGNG+RC  +++   + +K      ET  GI    L  +  +   +
Sbjct: 60  II--INSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           ++DMG P  D K IP+  S D++ +    I    +        + MG PH + F   DL 
Sbjct: 118 TIDMGTPSFDPKKIPV-NSCDEVVKKELKINEKTYSITS----MFMGVPHTVIF--GDLE 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            YD+   G  + K+ +F EG N++   V + + + ++TWERG G T ACG+  CA  VAS
Sbjct: 171 KYDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVAS 229

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L  T   V   + GG L IE  D N VFMTG A+  ++G+ DI
Sbjct: 230 NKLGFTEGKVKAHVPGGILFIEVKD-NKVFMTGPAEVSFKGEYDI 273


>gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 276

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAPEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5]
          Length = 276

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
          Length = 281

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 147/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F     +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVAEQPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V     + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N]
 gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N]
          Length = 298

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 15/284 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F KM G GN  +V+D      ++T +   AL    + HF    DQI+L+        D 
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQTIDMTPERARALG---DRHFGVGADQILLVEPATRPDADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    +     E + G++V  E  D  ++V+M
Sbjct: 67  RYRIFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEM 126

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G    D   +P      +  +  +D  ++ P+    +     V++ NPHA+  V D +  
Sbjct: 127 GTTRFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIELS-AVAISNPHAVQVVAD-VDQ 184

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             ++  G  +  HP F+  VN    ++    ++ LR +ERG G T ACG+ ACA+V A  
Sbjct: 185 APVSEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGI 244

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +  V V+  GG L I W +   + MTG A+  + G++DI
Sbjct: 245 RRGLLDSPVRVQTRGGALTIAW-NGEQLRMTGPAESVFSGQVDI 287


>gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 276

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WLDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
 gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
          Length = 281

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 21/287 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G GN  + +D    +     + ++   +  +T      L+   +    D  +R
Sbjct: 5   IKFTKMHGAGNDYIYVDTT-QYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKADFSMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSISV 118
           I N DGSE   CGN  RC+ ++L      K+   T +T+ GI      VA + +  +++V
Sbjct: 64  IFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVNTVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDL 175
           DMG P  +    P+  ++D          P+  L     +V   VSMGNPH + FV +D+
Sbjct: 124 DMGIPADE----PV--NYDGNGAKPMKEQPI--LIEGKRYVGTTVSMGNPHIVIFV-NDI 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DLA+ G  +  HP+F   +N+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 175 TDTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATAVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +    +  R   + M GG + I+W   + HV MTG A K +EG++++
Sbjct: 235 AFLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281


>gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Virginia]
          Length = 265

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 130/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R   + +  D             DQ++ I D  D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTI-DRSDGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P+       P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKV------PLLVPKYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW ++    +     + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSGVTESFRGVL 265


>gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056]
 gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058]
 gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059]
 gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
 gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
          Length = 281

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   + +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVAEEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
 gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
          Length = 291

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 138/290 (47%), Gaps = 17/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G GN  +V+D       +++     L+   + HF    DQI+ +       +D
Sbjct: 3   IPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLA---DRHFGVGADQILTVRPSPAPGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG+EV+ CGNG RC  RF+  +    + +   +T  G++  + N DG ++V+
Sbjct: 60  FEYLIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVN 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPV-----NHLFLRNPFVVSMGNPHAIFFVED 173
           MG P+ +   IP  A          +   P+      H       VVSMGNPHA+  V D
Sbjct: 120 MGAPVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVV-D 178

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    +   G L+  H  F + VN    ++     + LR +ERG G T ACGS ACA+V
Sbjct: 179 DVDTAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAV 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           VA   L   +  V V+  GG L I W      V MTG A   + G++++ 
Sbjct: 239 VAGIRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288


>gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 284

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V++ +      IT +   AL+        DQI+L+        D   RI N
Sbjct: 1   MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DG EV+ CGNG RC VRF+  +    +     E    +L  K + DG + VDMG PI D
Sbjct: 61  ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120

Query: 127 WKLIPL-ARSFDKMDR--DRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181
             LIP  A     M    +  +  P++     +  V  +SMGNPHA+  V  D+    + 
Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVV-GDVDSAPVL 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ + +HP F   VN+   +V +   + LR +ERG G T ACG+ ACA VV+      
Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L I W        + V MTG A   +EG+ +I
Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284


>gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 276

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPDEIPFEAAEQAISYTVDVDGQNIEM-AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
 gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
          Length = 279

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 141/283 (49%), Gaps = 12/283 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++M+ F KM+G GN  +VID      ++++D I  L+       FDQ++L+     A  D
Sbjct: 2   ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVES--SAVAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV  CGNG RC VRF+  +   +++  + ET  GI+  K    G ++V+
Sbjct: 60  FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      IP    F        +   VN     N   VSMGNPHA+  V DD+    
Sbjct: 120 MGAPRFKPDAIP----FVAASAATHYALEVNDQAF-NIAAVSMGNPHAVLTV-DDVETAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +  HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ V     
Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + +  V V   GG L I W   +  V MTG A   + G++D+
Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDL 276


>gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218]
          Length = 276

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 146/284 (51%), Gaps = 26/284 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F+KM G+GN  +V+D    +   + + I  ++ D +T   FDQ++++    D   D   R
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRMA-DRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMG 121
           I N DGSEV+ CGNG RC  RF+  RMK    + S +  T +G +V     D  I+V+MG
Sbjct: 64  IFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P  +   IP    F     ++ +I  V    LF      VSMGNPH +  V DD+   +
Sbjct: 122 VPEFEPSKIP----FRAKQAEKTYIMRVEEQTLFCG---AVSMGNPHVVT-VVDDVTTAN 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236
           + + G LL  H  F E VN    +V +   ++LR +ERG G T ACGS AC +V   V  
Sbjct: 174 VETLGPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQ 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           G L  T   V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 234 GLLDDT---VTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQL 274


>gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 276

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/288 (35%), Positives = 142/288 (49%), Gaps = 24/288 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPTNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPL-----ARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P    + IP      A S+  ++D     +             VSMGNPHA+  V DD
Sbjct: 121 GPPRFAPQEIPFQAAEQASSYSVELDGQTVELA-----------AVSMGNPHAVLRV-DD 168

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  +   G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ V
Sbjct: 169 INNAPVHELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAV 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           A+      +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 229 AAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
 gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
          Length = 284

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 19/282 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + +   A+   S       D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGSI---SV 118
           RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A+ +  DG +   +V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVTV 123

Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L    +P L    ++   +    G      L+    VSMGNPH +F +ED +  
Sbjct: 124 DMGEPRLTKAELPMLGGGEEQTINETMTFGEAE---LKGT-AVSMGNPHIVFPIED-IEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              + K +  ++V + GG L+I W +N HV MTG A+   EG
Sbjct: 239 LNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEG 280


>gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354]
          Length = 269

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 17/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  +++D R     ++ +  I AL+       FDQ++++    +A  D  
Sbjct: 3   LPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--DLA 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DG EV++CGN  R V     + +  +  +  T  G L  +   + + +  MG  
Sbjct: 61  MRIHNADGGEVEACGNATRAV-----AVLHGQPASIATAGGTLRVRPGENMAEAA-MGRA 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W+ IPLA + D  +       P+    L  P  V++GNPH +FFV DD     L + 
Sbjct: 115 RFHWQDIPLAYAMDTREM------PLGWDMLERPSAVNVGNPHIVFFV-DDARAVPLETL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+   +      +
Sbjct: 168 GPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGLVD 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             V V + GG L I   +   + M G A + + G  ++
Sbjct: 228 AEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFEL 265


>gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
 gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
          Length = 274

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 10/276 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
              V V++ GG L I W      +FMTG A   ++G
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDG 270


>gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
 gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
          Length = 269

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    I+V
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++ H 
Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDHV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
 gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
          Length = 288

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 32/298 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-----DQIMLIHDFQDASVDA 62
           F KM G+GN+ + ++     + +  + + ALS + +  F     D ++LI     A  D 
Sbjct: 3   FTKMHGLGNQYIFVNQ--FEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA------KENRDG 114
            +RI N DGSE ++CGNG+RCV ++      + + S T ET+ GI+ A      + N   
Sbjct: 59  QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118

Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            ++VDMG P L+ K IPL       + ++   +    H        VSMGNPHA+FFV +
Sbjct: 119 RVTVDMGVPRLEPKEIPLLGTEKTPVIKEGIEVDNARHEMT----AVSMGNPHAVFFV-N 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            + +  L + G  + KHP F + VN+   +  S   +  R WERG G+T ACG+ ACA+V
Sbjct: 174 SIENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAV 233

Query: 234 VASGC--LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           VA+      K    V V + GG L I W  ++ V+MTG A+        I  G++++K
Sbjct: 234 VAAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAET-------ICIGEYVRK 284


>gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
 gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
          Length = 268

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 145/285 (50%), Gaps = 28/285 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  + ++ M+    N    +I           D ++LI D   A  D  +
Sbjct: 3   IEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE + CGN  RC+ ++L       +     +T+ GI    L  KE +  S+ V
Sbjct: 61  RIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESVRV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P  D   + L  ++                  R    VSMGNPH + FV D +   
Sbjct: 121 DMGIPA-DIHWVDLGDAYP----------------FRKGVAVSMGNPHLVIFV-DKMEEV 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LA  G +L +HP+F + VN+  A+V + E++ +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 163 ALAEVGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAAAF 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
             +     +V M GG L I+W  +  H++MTG A K ++G +++K
Sbjct: 223 SGQCGSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELK 267


>gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
 gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
          Length = 276

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 139/280 (49%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + S    T +G +V K   +  I+V+MG 
Sbjct: 65  FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I     + LF      VSMGNPH +  V DD+   D+
Sbjct: 123 PEFEPSKIP----FKAKQPEKTYILRTDAHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                V V++ GG L I W      ++MTG A   ++G+L
Sbjct: 235 LLAENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQL 274


>gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae]
          Length = 269

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 133/274 (48%), Gaps = 16/274 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF  L     ++     T  G L      +  + V+MG P  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P    F     ++ +I       +    VVS+GNPH +  VED +   ++A  G +L
Sbjct: 121 NKVP----FKAQKSEKTYIIRTQQQTILCG-VVSIGNPHCVLQVED-IDTAEVALLGPML 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHKTNR 244
            KH  F E  N+   +V   E + LR  ERGVG T ACGS ACA+V   +  G L K+  
Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKS-- 232

Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            V V + GG L I W+   H +FMTG A   ++G
Sbjct: 233 -VRVDLPGGMLKIRWNGLGHPLFMTGPATHVYDG 265


>gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
 gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
          Length = 284

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 147/285 (51%), Gaps = 19/285 (6%)

Query: 7   DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++    +   + ++  AI   S       D ++LI     A V   
Sbjct: 5   QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPVK-- 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSI---S 117
           +RI N DGSE ++CGNG+RCV +++     +   +F  ET+ G++ A  + +DG +   +
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P  + + +P L         +    G        N   VSMGNPH +F++ED + 
Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFGTTT----LNGTAVSMGNPHIVFYLED-IE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++
Sbjct: 178 KAPLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 K    ++V + GG L+I W DN HV MTG A+   +G  
Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTF 282


>gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
 gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
          Length = 306

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 134/296 (45%), Gaps = 18/296 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFD-----QIMLIHDFQDAS 59
           + F KMEG GN  + +D       +    I  L+    + H+       ++++      S
Sbjct: 11  IAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILPPTSPDS 70

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS-- 115
            D  +R+ N DGSE + CGN  RCV RF    +   R     ET+ GI + +   D    
Sbjct: 71  ADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRVDDAGGC 130

Query: 116 ---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHAIFF 170
              + VDMG P L  + IP+       D +   IG    +  R      VSMGNPHA+ F
Sbjct: 131 PSRVCVDMGTPELARQRIPVCPD-TASDPESPCIGQPIRVLDREWTMTCVSMGNPHAVVF 189

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+   DL   G     HP F    N    ++     + +R WERG G T ACG+ AC
Sbjct: 190 V-DDVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLACGTGAC 248

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
           A  VA      T R V+V++ GG L I W +   H+ MTG A+  + G+     G+
Sbjct: 249 AVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQGQ 304


>gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
 gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
          Length = 274

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ + I  +    L    VVSMGNPH +  VED +   ++ 
Sbjct: 121 PDFEPQHVP----FRAIKAEKTYIIRAIERTVLCG--VVSMGNPHCVIQVED-VDTAEVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E  N+   ++ +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 ILGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDL 233

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            N  V V + GG L I W      ++M G A   +EG + +
Sbjct: 234 LNSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274


>gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
 gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
          Length = 318

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 139/289 (48%), Gaps = 23/289 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAFIRI 66
           F+K +G+GN  +++D R   + + +        D N       +I         D  +RI
Sbjct: 34  FSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPPVGDTDLTMRI 93

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSE + CGNG+RC+ +F++       + +   T+ G++  +   DG + VDMG PI
Sbjct: 94  FNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQVRVDMGTPI 153

Query: 125 LDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF------VEDD 174
           L+   +P   +  +    + +D    G    +       VSMGNPHA+ +      ++ D
Sbjct: 154 LEGPKVPTTLAPTQGSTVVQQDLVVEGKTYKVT-----CVSMGNPHAVIYSCDGEPIKID 208

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               +LA+ G    ++ +F    N     V S   + +  WERG G T ACG+ ACA VV
Sbjct: 209 DLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGACALVV 268

Query: 235 ASGCLH---KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           A G L      N+   V + GG L IEW   +NH++MTG A+  + G+L
Sbjct: 269 A-GILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316


>gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 264

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 128/276 (46%), Gaps = 16/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM   G+  ++ID RG  + IT +   AL        F+Q++++ D  D++  A +
Sbjct: 3   LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS + +CG+  R     L       S   +T RG+       D S+SV+MG P 
Sbjct: 61  TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            DW+ IPLAR  D +           HL L   P   SMGNPH  FFV DDL   D+A+ 
Sbjct: 121 FDWQSIPLARELDSL-----------HLPLPGTPAACSMGNPHCSFFV-DDLAPLDIATL 168

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F    N+   +V   +++ LR WER   +    GS +CA+ V        +
Sbjct: 169 GPQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLD 228

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             V V   GG + + W     V + G   + + G L
Sbjct: 229 SPVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264


>gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
 gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
          Length = 267

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R         AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +K  T +T  GI V K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172
           ++VDMG P L+ + +     F                    PF    VSMGNPH + FVE
Sbjct: 120 VTVDMGSP-LETEAVDFGDQF--------------------PFQSTRVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +   +L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 D-ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            VA+       R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 276

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SV+M
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F   D        V    L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPP----RFIPAEIPF-VADAQAPSYPLVVDGQLYSIAAVSMGNPHAVLRV-DDVSTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b]
          Length = 277

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 142/284 (50%), Gaps = 21/284 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVD 61
           + F KM G+GN  +V+D       +T + I  L+   N H    FDQ +LI   Q   +D
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLA---NRHTGIGFDQCLLIESSQTEGID 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSI 116
              RI N DG EV  CGNG RC+  F     LT++ K    T  T+  +++   N D S+
Sbjct: 60  FNYRIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLII---NEDNSV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV+MG P L    IPL       +        +N+    N   +S+GNPHA+  VE+ + 
Sbjct: 117 SVNMGVPRLAPGEIPLLADRQSPEYSL----KLNNGNTVNLHAISVGNPHAVLLVEN-ID 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + S G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +
Sbjct: 172 TAPVNSLGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +  +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 232 RLFYNLSDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 259

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 127/258 (49%), Gaps = 11/258 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P  + + +P    F  +  ++ +I   + H  L    VVSMGNPH +  VE D+    + 
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F E  N+   ++    ++ LR +ERG G T ACGS ACA+V        
Sbjct: 174 TLGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGL 233

Query: 242 TNRAVSVKMLGGGLLIEW 259
            +  V V + GG L I+W
Sbjct: 234 LSANVRVSLPGGELDIQW 251


>gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
 gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
          Length = 277

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 20/284 (7%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G + + T  AI           D ++++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIV--VPSDTCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120
           IN DGSE + CGNG+RC  ++      + +++FT ET+ GI+      +  +    +VDM
Sbjct: 61  INSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+P  + K +P+    DK+   D D      VN   +    V+ +G PH   +VED +  
Sbjct: 121 GKPFFNSKDVPMNVDMDKVIDVDID------VNGETVTVSSVL-LGVPHTEVYVED-ITK 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S 
Sbjct: 173 APVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSF 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T R V V++  G L I + ++  V MTG A++ +E +L I
Sbjct: 233 EKGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276


>gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4]
 gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4]
          Length = 276

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 133/278 (47%), Gaps = 14/278 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC  RF  L     + S +  T +G +      DG ++V+MG P 
Sbjct: 65  FNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVPE 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F    +++ +I       LF      VSMGNPH +  V DD+   ++ +
Sbjct: 125 FEPNKIP----FKAKQKEKTYIMRTGEKTLFCG---AVSMGNPHVVT-VVDDVDTAEVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N    ++    ++ LR +ERG G T ACGS AC +V         
Sbjct: 177 LGPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FM G A   ++G+L
Sbjct: 237 DENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQL 274


>gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 274

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F  +  ++ +I  V    +    VVSMGNPH +  V D +   ++  
Sbjct: 121 PEFEPHHVP----FRALRAEKTYILRVAERTVLCG-VVSMGNPHCVIQVPD-VETAEVDI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      ++MTG A   ++G + +
Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274


>gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900]
          Length = 281

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   + +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
 gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
          Length = 281

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 147/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   +    +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVAEEPKALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20]
 gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20]
          Length = 282

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 32/292 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  + +D       H    + A +A  T   +  D ++LI     A  D 
Sbjct: 5   IKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGS--DGLVLIGSSDKA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L   + +  S+
Sbjct: 61  SMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNSV 120

Query: 117 SVDMGEPI-----LDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG P       D K   P+     ++D +R+ +G            VSMGNPH + F
Sbjct: 121 TVDMGIPADEPADYDGKGAKPMKEQPIEVDGERY-VGTT----------VSMGNPHLVIF 169

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V +D+    L   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ AC
Sbjct: 170 V-NDIEAIGLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGAC 228

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A+ VA+    +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 229 ATAVAAFLTGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
 gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
          Length = 276

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +IT   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +L+P    F   ++   +   V    + +   VSMGNPHA+  V +D+ +  + 
Sbjct: 122 AP----RLVPADIPFQASEQAASYALDVEGQSV-DIAAVSMGNPHAVLRV-NDINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276


>gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166]
          Length = 276

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/282 (35%), Positives = 138/282 (48%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+   H +I    A           FDQ++++   Q+  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120
            RI N DGSEV+ CGNG RC  RF+  +   +KRK    ET  GI+      DG I VDM
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRK-IKVETKGGIIELDIRPDGQIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +       G    L       VSMGNPHA+  V D +    +
Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAVSMGNPHAVLRV-DSVERAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
 gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
          Length = 290

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 148/295 (50%), Gaps = 22/295 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVID-MRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           M +  + F KM  +GN  ++ID  RG    +    + +  +  D N       +I   + 
Sbjct: 1   MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKIC-DRNFGVGGDGVIFVSKS 59

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111
            ++D   RI N DGSE + CGNG+RC  +++  +  +++K    ET+ G     L  K N
Sbjct: 60  DNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKNN 119

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIF 169
              SI VDMG      + IP+        +D+  I  V  L  +   +  V++GNPH + 
Sbjct: 120 LVESIKVDMGLATFKSEKIPVK------TKDKTFINKVCKLNDKKIKLSAVNVGNPHTVI 173

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV++    Y     G ++  HP+F E  N++  +V +   + + TWERGVG+T ACG+ A
Sbjct: 174 FVDEVSRDY-AEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGA 232

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281
            AS +    L K N+ V+V + GG L IE ++ N+    FM G+A   +EG L +
Sbjct: 233 VASTIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGILSM 287


>gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
 gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
          Length = 283

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 146/290 (50%), Gaps = 28/290 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM GIGN  + +D  G    +   +A +   +D +       L+        D  +
Sbjct: 3   INFTKMHGIGNDYVYVD--GFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIADFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN  RC+ +F+  T    +K+ + ET+ GI    L  ++ +   + V
Sbjct: 61  RMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYVEV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVED-D 174
           DMG+ IL  + IP+       D++ F   P+   N ++      VSMGNPH + + ED D
Sbjct: 121 DMGKAILSPQDIPVIS-----DQETFINTPISIDNEIYYGT--CVSMGNPHVVVYCEDVD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    L S G     +P+F E +N    ++    ++ +R WERG G T ACG+ ACA  V
Sbjct: 174 LLS--LESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACA--V 229

Query: 235 ASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A  C+     K N  ++VK+ GG L I + ++  V M G A K ++G ++
Sbjct: 230 AVSCVLNGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279


>gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
 gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
          Length = 281

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 148/282 (52%), Gaps = 10/282 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  ++       FDQ++++      +VD  
Sbjct: 2   LLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R   K+     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNMG 121

Query: 122 EPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P      IP +   F+ +    + +   N   L+   VV+MGNPHA+  V D L   D+
Sbjct: 122 YPKFMPHEIPFVTEEFEAL----YTLELANEQSLKID-VVNMGNPHAVTIVPDVLTA-DV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  H  F + VN    ++   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 ATMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 236 LLANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277


>gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 281

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   + +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera]
          Length = 307

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 142/293 (48%), Gaps = 17/293 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           +S  + F K  G+GN  +++D R   +   +        D N       +I      +  
Sbjct: 19  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGINGT 78

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +   ++SFT  T  G++V +   DG + 
Sbjct: 79  DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKVK 138

Query: 118 VDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
           VDMG+PIL    +P     +K   + +   ++  V+     N   VSMGNPH + F    
Sbjct: 139 VDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSW----NVTCVSMGNPHCVTFGTKG 194

Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ A
Sbjct: 195 GQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGA 254

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 255 CAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307


>gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357]
          Length = 269

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 127/271 (46%), Gaps = 10/271 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGEP  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P     +K ++          +      VVSMGNPH +  V DD+    + + G +L
Sbjct: 121 SAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVETLGPVL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V            V 
Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           V++ GG L I W    H ++MTG A   ++G
Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 265


>gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 370

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 142/293 (48%), Gaps = 17/293 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS-V 60
           +S  + F K  G+GN  +++D R   +   +        D N       +I      +  
Sbjct: 82  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGINGT 141

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +   ++SFT  T  G++V +   DG + 
Sbjct: 142 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKVK 201

Query: 118 VDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
           VDMG+PIL    +P     +K   + +   ++  V+     N   VSMGNPH + F    
Sbjct: 202 VDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSW----NVTCVSMGNPHCVTFGTKG 257

Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ A
Sbjct: 258 GQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGA 317

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           CA VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 318 CAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370


>gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32]
 gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32]
          Length = 276

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 139/280 (49%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI
Sbjct: 5   FSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  RMK    + S    T +G +V K   +  I+V+MG 
Sbjct: 65  FNADGSEVEQCGNGARCFARFV--RMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   IP    F     ++ +I    V+ LF      VSMGNPH +  V DD+   D+
Sbjct: 123 PEFEPGKIP----FKAKQPEKTYILRTDVHTLFCG---AVSMGNPHVVT-VVDDVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                V V++ GG L I W      + MTG A   ++G+L
Sbjct: 235 LLAENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQL 274


>gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
 gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
          Length = 276

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 141/277 (50%), Gaps = 11/277 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID    + N++   I A+    NT   FDQ +L+   Q   +D   R
Sbjct: 5   FTKMHGLGNDFIVIDGINQNINLSPQQI-AIMAQRNTGIGFDQCLLVESSQQEGIDFNYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV  CGNG RC+  F+       +   T  T    +    N D S+ VDMG P
Sbjct: 64  IFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L  + IPL    ++ D+    +     ++L     +S+GNPHA+  V + L+   + S 
Sbjct: 124 KLAPRDIPLLTQ-EQSDQYVLELSNNESIYLH---ALSVGNPHAVLLVPE-LHRAPVLSL 178

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  ++ HP F E VN+   ++ + + + LR +ERG G T ACGS A A+       +K +
Sbjct: 179 GKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYYKMD 238

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           + + V + GG LLI+W + N  + +TG A   +EG L
Sbjct: 239 KHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275


>gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
 gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
          Length = 284

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + ++  AI   S       D ++LI     A V   +
Sbjct: 6   FTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118
           RI N DGSE ++CGNG+RCV +++     +   +F  ET+ G++ A    +++    ++V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVTV 123

Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P  + + +P L         +    G        N   VSMGNPH +F++ED +  
Sbjct: 124 DMGKPRFEKEAMPMLGEPASTTINEPLDFGTTT----LNGTAVSMGNPHIVFYLED-IEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++ 
Sbjct: 179 APLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                K    ++V + GG L+I W DN HV MTG A+   +G  
Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTF 282


>gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 276

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIELA----AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WER  G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101]
          Length = 395

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 14/277 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           + F+K +G+GN  L++D R   D      +T + +  L         D ++L     +  
Sbjct: 16  LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            +  +RI N DG+E + CGNG+RC+ RFL  R      +++  +T+ G +V +   DG+I
Sbjct: 76  -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L    +P           +  +     +F        MGNPH +  V   + 
Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVFAVA--AAGMGNPHVVIPVPL-VE 191

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG LL  HP F    N+   +V S + L +R WERG G T ACG+ ACA++V+ 
Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAK 272
             L   +R   + + GG L I W   +  VFM G A+
Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAE 288


>gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
 gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
          Length = 275

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 146/301 (48%), Gaps = 58/301 (19%)

Query: 5   MVDFAKMEGIGNKILV-------------IDMRGCHDNITSDAINALSTDDNTHFDQIML 51
           M+ F K  GIGN  ++             + M+ CH N    A            D +M+
Sbjct: 1   MLKFEKYHGIGNDFIIFREEEVAGLDYSELAMKVCHRNFGIGA------------DGMMV 48

Query: 52  IHDFQDASVDAFIRII--NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-IL 106
               + A     IR+I  N DGSE   CGNG+RC   F+ +   +++     ET+ G +L
Sbjct: 49  AAKSEKAD----IRMIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNML 104

Query: 107 VAKENRDGSI--SVDMGEPILDWKLIPLA--------RSFDKMDRDRFHIGPVNHLFLRN 156
           +  E +DG     V+MG PI +   IP++        R  +  DR+      ++ LF   
Sbjct: 105 IKTEEKDGRYLARVNMGMPIFETDSIPMSVSEKDYIERKIESYDREF----SISALF--- 157

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
                MG  H++ FV DDL   D+  +G  L  +P+F    N++ A+  S + +D++TWE
Sbjct: 158 -----MGTTHSVTFV-DDLETLDIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWE 211

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RG G T ACG+ ACA VV      + ++ V V + GG L IE  D+  VFMTGE++K  E
Sbjct: 212 RGAGYTFACGTGACAVVVIGNLTGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAE 270

Query: 277 G 277
           G
Sbjct: 271 G 271


>gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
 gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
          Length = 303

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 137/295 (46%), Gaps = 32/295 (10%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F KM G GN  +V+D      ++T +   AL    + HF    DQI+L+        D 
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQTIDMTPERARALG---DRHFGIGADQILLVERATRPDADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E   GILV  +  D  ++VDM
Sbjct: 67  RYRIFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDM 126

Query: 121 GEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPF---------VVSMGNPH 166
           G    +   +P     LA      D        +  L L  P           V++ NPH
Sbjct: 127 GSTRFEPSALPFDTAGLASRVQGQDT-------LWELELDAPAGLPRTVALSAVAISNPH 179

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           A+  V DD+    +A  G L+  HP F   VN    ++    ++ LR +ERG G T ACG
Sbjct: 180 AVQVV-DDVDTAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACG 238

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + ACA+V A       +  V V+  GG L + W+    + MTG A+  + G++DI
Sbjct: 239 TGACAAVAAGIRRGLLDSPVRVQARGGVLTVAWN-GEQLRMTGPAESVFTGQVDI 292


>gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
 gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
          Length = 277

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG+GN  + ++     + I   +  A+   D  HF    D ++LI     A  D F
Sbjct: 3   FTKMEGLGNDYVYVNC--LEEQIADPSKTAIEVSDR-HFGIGSDGLILIKPSDKA--DFF 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           + + N DGS+ + CGNG+RCV +F+       +   T +T+ GI     N +     S+ 
Sbjct: 58  MEMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P     LIP+    D +    F  G   +        VSMGNPH I ++ DD+ +
Sbjct: 118 VNMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRIT----CVSMGNPHCITYM-DDIKN 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++   G +     +F + VN     V   ++L +R WERG G T ACG+ ACA  VAS 
Sbjct: 173 LEIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
                N +V+VK+LGG L I W  + + V+M G A   + G+
Sbjct: 233 LNGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGE 274


>gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54]
          Length = 297

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 137/295 (46%), Gaps = 32/295 (10%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F KM G GN  +V+D       +T +   AL    + HF    DQI+L+        D 
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQAIEMTPERARALG---DRHFGIGADQILLVERATRPDADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDM
Sbjct: 61  RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDM 120

Query: 121 GEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPF---------VVSMGNPH 166
           G    D   +P     LA   +  D        +  L L  P           V++ NPH
Sbjct: 121 GSTRFDPAALPFDTAGLASRTEGQDT-------LWQLELDVPAGLPRSVALSAVAISNPH 173

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           A+  V D++    +A  G L+  HP F+  VN    ++    S+ LR  ERG G T ACG
Sbjct: 174 AVQVV-DNVDTAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACG 232

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + ACA+V A       +  V V+  GG L I W +   + +TG A+  + G++DI
Sbjct: 233 TGACAAVAAGIRRGLLDSPVRVQTRGGVLTIAW-NGEQLRLTGPAESVFTGQVDI 286


>gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18]
 gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18]
          Length = 276

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 26/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + ++   C +    D         N +F    D ++LI   + A  D  
Sbjct: 3   FTKMQGAGNDYVYVN---CFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV-----AKENRDGSI 116
           +R+ N DGSE + CGNG+RCV ++      +  K  T ET  GIL       ++++   +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVED 173
            V+MG P L  K IP+  + D+   +     P+N   L + F     SMGNPH + FV D
Sbjct: 118 RVNMGPPRLTRKEIPMLGNPDEKVINE----PLN--ILHSTFHITCASMGNPHCVIFV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+  + +  +G ++  H MF    N+   +V S   +  RTWERG G T ACG+ + A  
Sbjct: 171 DVDKFPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVT 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            A      T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 231 AACVLNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276


>gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
          Length = 271

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 23/285 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D         +  I  L+       FDQ++++       VD  
Sbjct: 2   LINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
             I N +GSEV+ CGNG RC  RF+  +    S   T +T   I+    N D ++ VDMG
Sbjct: 62  YVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDMG 121

Query: 122 EPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +P  +   IPL   +  +    + F +G            +S+GNPH +  V+ D+   D
Sbjct: 122 KPSFNPADIPLLVPQQSEYYQIEGFDLG-----------AISIGNPHCVMLVK-DVNTID 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VAS 236
           + +    + +  +     N+   ++ +   ++LR +ERG   T ACGS ACA+V   V  
Sbjct: 170 VNTIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQ 229

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           G L K    V V + GG  LIE+    H+F++G A+  +EG+++I
Sbjct: 230 GLLKKN---VVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271


>gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays]
 gi|194688384|gb|ACF78276.1| unknown [Zea mays]
 gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays]
 gi|219888355|gb|ACL54552.1| unknown [Zea mays]
          Length = 352

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQ---IMLIHDFQDASVDAFI 64
           F K +G+GN  +++D R       +    A   D N        I ++    DA  D  +
Sbjct: 70  FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNDA--DYTM 127

Query: 65  RIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           RI N DGSE + CGNG+RC  RF   L +     SFT  T  G ++ +   DG + VDMG
Sbjct: 128 RIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDMG 187

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-- 179
           EPIL    IP      K ++              +   VSMGNPH + F  ++L      
Sbjct: 188 EPILSGADIPTKLVATK-NKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQID 246

Query: 180 ---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA+
Sbjct: 247 DLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAA 306

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               +  R   V + GG L IEW  D+NHV+MTG A+  + G +
Sbjct: 307 VLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350


>gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
 gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
          Length = 269

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 139/278 (50%), Gaps = 20/278 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68
           M G+GN  +V+D    +   + D I  L+ D +T   FDQ++++    D   D   RI N
Sbjct: 1   MHGLGNDFMVVDCITQNIFFSPDLIRRLA-DRHTGVGFDQLLVVEAPYDPETDFHYRIFN 59

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            DGSEV+ CGNG RC  RF+  RMK    + S +  T +G +V     D  ++V+MG P 
Sbjct: 60  ADGSEVEQCGNGARCFARFV--RMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPE 117

Query: 125 LDWKLIPLARSFDKMDRDRFHI--GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   IP    F     ++ +I       LF      VSMGNPH +  V DD+   D+ +
Sbjct: 118 FEPNKIP----FKAKQTEKTYILRAEDKTLFCG---AVSMGNPHVVT-VVDDVATADVET 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         
Sbjct: 170 LGPLLESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLL 229

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V+V + GG L I W      +FMTG A   ++G+L
Sbjct: 230 DEHVTVHLPGGDLKISWKGPGKPLFMTGPATHVFDGQL 267


>gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
 gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
          Length = 276

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 138/282 (48%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D NT   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRNTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       +       G V+ +       VSMGNPH++  V DD+    +
Sbjct: 121 GPPRFVPADIPFIADEQALSYPLEVDGQVHQIA-----AVSMGNPHSVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V++ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276


>gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
 gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 139/289 (48%), Gaps = 35/289 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R         AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +K  T +T  GI V K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVE 172
           ++VD+G P L+ + +     F                    PF    VSMGNPH + FVE
Sbjct: 120 VTVDIGSP-LETEAVDFGDQF--------------------PFQSTRVSMGNPHLVTFVE 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +   +L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+
Sbjct: 159 D-ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            VA+       R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21]
 gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21]
          Length = 292

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 144/297 (48%), Gaps = 24/297 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           + ++V F+KM G+GN  +VID         D              +   D ++ +    +
Sbjct: 3   ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI------LVAK 109
              D   RI N DGSE + CGNG+RC  +++     ++ K    ET+ GI      ++  
Sbjct: 63  EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAI 168
           E R  S SVDMG P      IP+     K +++ F    ++ +    N   V++GNPHA+
Sbjct: 123 EVR--SSSVDMGIPTFKSVEIPM-----KTEKEEFLDAELDVNGTTVNLTAVNVGNPHAV 175

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            F E+ +   DL   G  +  HP F E  N+    V +   +++ TWERG G T ACG+ 
Sbjct: 176 IFTEN-IEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTG 234

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIK 282
           A ASV+A   L K +  V V + GG LLI   E  +   +FM GEA   ++G ++++
Sbjct: 235 ATASVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291


>gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 269

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   RI N 
Sbjct: 1   MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           +G+EV+ CGNG RCV    FL   + ++     T +  +  K   D +I V+M EP    
Sbjct: 61  NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + I +++   K+  + F +  +N        +VS+GNPH +  VE  + +  +   G LL
Sbjct: 121 EEISISK---KIVLNNFSVKLINKNL--KCSLVSIGNPHCVIKVES-INNAPVKKIGELL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +     V 
Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V +LGG L+I+W   N+ ++M G A   ++G + I
Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269


>gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13]
          Length = 279

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C +   +  + ++   +D       D ++LI   Q A  D  
Sbjct: 3   FTKMQGIGNDYIYVN---CFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE   CGNG RC+ +++       +   T ET  GI   + +  G    S++
Sbjct: 58  MRIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+ IL  + IP+        ++ F   PV     L     VS+GNPHA+ F  D + 
Sbjct: 118 VDMGKAILTPREIPVESD----SQEPFVAKPVQVGDRLERLTCVSVGNPHAVVFC-DRVE 172

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G L   H +F + VN    RV    +L +R WERG G T ACG+ ACA+ VA+
Sbjct: 173 DLDLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAA 232

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                      + VK+ GG L I +  +  V MTG A++ ++G++++
Sbjct: 233 VLNGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279


>gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
 gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
          Length = 278

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + ++   C +    D         N +F    D ++LI   + A  D  
Sbjct: 3   FTKMQGAGNDYVYVN---CFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116
           +R+ N DGSE + CGNG+RCV ++      + +   T ET  GIL  +   D       +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175
            V+MG P L  K IP+         +R    P+N L    N    SMGNPH + FV DD+
Sbjct: 118 RVNMGPPRLTRKEIPMLGE----PEERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDV 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A
Sbjct: 173 DTFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 T + +   + GG L +EW ++ +++MTG A + + G++D+
Sbjct: 233 CVLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278


>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
            L2-63]
          Length = 1350

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 146/292 (50%), Gaps = 26/292 (8%)

Query: 5    MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            M+ F KM+GIGN  +          I++    A+   D  HF    D I+L+   + A  
Sbjct: 1070 MLKFTKMQGIGNDYIYCST--FDQEISNPEALAVRLSDR-HFGIGGDGIILVCPSKVA-- 1124

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGS 115
            DA +++ N DGSE + CGNG+RCV +FL         ++   T ET+ GI   K    G 
Sbjct: 1125 DAKMKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGG 1184

Query: 116  ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                + VDMG+ ILD K IP+A   DK+      I   N+    N   VSMGNPH + F+
Sbjct: 1185 KVNRLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFM 1240

Query: 172  EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--A 229
             DD+ + D+ + G       +F E VN     V    ++ +R WERG G T ACG+   A
Sbjct: 1241 -DDIDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACA 1299

Query: 230  CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             A         K    + +K+ GG L+I + D   V+MTG A+K +EG++++
Sbjct: 1300 VAVAACENGFCKKGEDIKIKLKGGDLIINYTDET-VYMTGNAEKVFEGEVEV 1350


>gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
 gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
          Length = 276

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 137/282 (48%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+   H +I    A           FDQ++++   Q+  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120
            RI N DGSEV+ CGNG RC  RF+  +   +KRK    ET  GI+      DG I VDM
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRK-IKVETKGGIIELDIRPDGQIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +       G    L        SMGNPHA+  V D +    +
Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAASMGNPHAVLRV-DSVERAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 321

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 17/278 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K  G+GN  +VID R      +SD I  +    N H     DQ+++    +       
Sbjct: 49  FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVC---NRHVGIGGDQLLVFEAPESPEASVR 105

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DG E ++C N  RC    +    +R     ET+ G + AK   D  +S+ +G  
Sbjct: 106 LRIYNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNA 165

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPLA S +     +   GP     L +P  +++GNPH ++FV+ +L   D+A+ 
Sbjct: 166 KWDWPEIPLAGSLESAGA-QLESGP-----LVSPIAINIGNPHLVYFVQ-NLGGLDIAAL 218

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS--GCLHK 241
            + + K     E  N+ +A VT  +S+ L  +ER   LT ACGS ACA+V+A+    L  
Sbjct: 219 ADPVQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLIS 278

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +++ V+V   GG L +E  D     +TG     ++G +
Sbjct: 279 SDK-VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315


>gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 279

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 15/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +V++        +   I  L         D ++L+    + +  AF+  
Sbjct: 3   FLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFMDY 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120
            N DG+  Q CGNGMRC+ +++T R  +K+  FT  +  G     L+ +   + +I VDM
Sbjct: 61  YNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G  +   + IP+    +++    F    V + +       SMGNPH +     D     +
Sbjct: 121 GNVVFSAQKIPVISKKEEVIGAHFDWDGVTYSY----GCASMGNPHMVVLT-GDFDQTPI 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G    KH MF E  N+S A V     + + TWERG G T ACG+  CA+V     L 
Sbjct: 176 EAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHRLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K + AV  ++ GG L +E  D +HV+MTG A+  +EG +D++
Sbjct: 236 KVDTAVEAQLSGGILSVEL-DGSHVWMTGPAQTVYEGSVDVE 276


>gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
 gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
          Length = 269

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    I+V
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++   
Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 278

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 133/277 (48%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63
           F+KM  +GN  ++ID    + ++ S+ I  L+   N H    FDQ++L+       +D  
Sbjct: 3   FSKMCSLGNDFVIIDAVTQNVHLRSEFICRLA---NRHTGIGFDQLLLLEPPNSPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC+ RF  L     +K+    T    +         I V+MG
Sbjct: 60  YRIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP    + IP  RS  K  +  + +       L    +VSMGNPH I  VE  L    + 
Sbjct: 120 EPDFFPQTIPF-RS--KTIKKIYELDVAEQKLLCG--IVSMGNPHCIIQVEK-LDSDQIK 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  HP F EG N+   ++   + + LR +ERG G T ACGS ACA+V        
Sbjct: 174 LIGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  V V+  GG L I W    H ++MTG A   ++G
Sbjct: 234 LDEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDG 270


>gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619]
 gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619]
          Length = 276

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 139/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       ++      G ++ +       VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADEQALNYPLEVDGELHSIA-----AVSMGNPHAVLRV-DDIRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HGLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276


>gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 267

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 130/276 (47%), Gaps = 16/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAF 63
           ++F KM   G+  +++D R   + +TS A+     D N    F+Q+ ++ D  DA  DA 
Sbjct: 3   LNFQKMHANGDDFVIVDSRNSANPVTS-AMAQRMGDRNLGVGFNQLAVLLDCDDA--DAR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS +  CG+  R     L       S    T RG+L  +    G ISVDMG P
Sbjct: 60  VMFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +  W  IPLA++ D        + P+      +P   SMGNPH  +FV DD    D+A+ 
Sbjct: 120 LFGWSDIPLAQALDT------AVLPLAG----SPAACSMGNPHCTYFV-DDPATVDIATI 168

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  + +F    N+   ++     + LR WERG G+    GS +C +VV        +
Sbjct: 169 GPAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLD 228

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R V V+  GG + ++W     VF+ G  +  + G +
Sbjct: 229 RTVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTM 264


>gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
 gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
          Length = 281

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 150/287 (52%), Gaps = 23/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAF 63
           V F KM+G GN  + +D +     +    AI   +       D ++LI    D    D  
Sbjct: 7   VHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADYS 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRD--GS 115
           +RI N DGSE   CGN  RC+ ++L  +   ++ +   ET+ GI + K    +N++   S
Sbjct: 67  MRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVKS 126

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDM EP L+     +  S  + D  +F               V MGNPH + FV DD+
Sbjct: 127 VTVDMLEPKLENPEQFIGPSVLEADGRKFE-----------GTYVCMGNPHFVTFV-DDI 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+A +G +L +   F +  N+  A+VT  + +  R WERG G+T ACG+ ACA+ VA
Sbjct: 175 DTIDIAHYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +   ++T R  S+ M GG L IE+ + ++HV+MTG A   +EG++++
Sbjct: 235 AALTNRTGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281


>gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470]
 gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470]
          Length = 283

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 138/290 (47%), Gaps = 19/290 (6%)

Query: 1   MQSSMVDFAKMEGIGNKI-----LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF 55
           MQ   + F K +  GN       + +D+R     +    ++  + +     D I+ +   
Sbjct: 4   MQEGFMHFTKWQACGNDFVFVNAMTMDIR----PVVKKCVSICNRNFGIGADGIIFVLPS 59

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + A++   +RI N DGSE + CGNG+R   ++      + +  F+ ET  GIL  +   D
Sbjct: 60  EKATLQ--MRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPD 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G + VDMG P L+   IP+    D M  +R      N L       VSMGNPH + F  D
Sbjct: 118 GKVRVDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFT-D 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L   G+ L     F    N+  A++     L +R WERG G+T ACG+  CA+V
Sbjct: 174 DIDRISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATV 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281
           VA+           V + GG L I W  ++  HVFMTG A+K +EG+  I
Sbjct: 234 VAAILNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283


>gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
 gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
          Length = 269

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    I+V
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEITV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++   
Sbjct: 123 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQA 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 166 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565]
 gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565]
          Length = 276

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF  L   + R      T RG +V +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P  +   IP  A+  +K    R       H  +    VVSMGNPH +  V   +    +
Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--VVSMGNPHCVIEV-PSVADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ +H  F E VN+    + +   + LR +ERG G T ACG+ ACA+ V      
Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276


>gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
 gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
          Length = 284

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 5/281 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            ++F KM G+GN  +V+D+      + +  I  L+       FDQ++L+       VD  
Sbjct: 2   FLEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP     D+     + +   +   + N  VV+MGNPHA+  V D L   D+A
Sbjct: 122 PPKFLPDEIPFVTQVDEDIEGLYSLELADDKSI-NIDVVNMGNPHAVTIVPDVLTA-DVA 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 180 GIGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 240 LASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
 gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
          Length = 283

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 129/270 (47%), Gaps = 17/270 (6%)

Query: 8   FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD----A 62
           F KM G+ N  +++D R G       D +           +Q++ I    D   +    A
Sbjct: 7   FIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAYA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DG EV +CGN  RC+   L           ET  G+L  +      ISV  G 
Sbjct: 67  AMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFGP 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +DW+ IPL+R  D +     H+ PV    L++   + +GNPHA+FFV D L  +D+A 
Sbjct: 127 ISMDWRRIPLSREVDTL-----HL-PVQSGPLKDGLALDIGNPHAVFFV-DCLELFDMAH 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK- 241
              ++   P+F EG+N+  A V    +L L  WER   LT ACG+ AC +  A+  L + 
Sbjct: 180 HAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAA--LKRG 237

Query: 242 --TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
             T+  ++V +  G L IE  + +   MTG
Sbjct: 238 LVTSTRIAVHLPAGLLKIEIANGDMAVMTG 267


>gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 289

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 147/299 (49%), Gaps = 37/299 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------- 55
           + M+ F+KM G+GN  +VID           A   +  D    F + +    F       
Sbjct: 2   TRMILFSKMHGLGNDYVVID---------ESAQECIPEDKKPEFVREVCTRGFSVGADGV 52

Query: 56  ---QDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-LV 107
              Q AS +  IR  I N DGSE + CGNG+RC  +F+   + ++++    ET+ GI  V
Sbjct: 53  IFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTV 112

Query: 108 AKENRDGSI---SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
             E  DG++    VDMG        IP+    ++ +DR      PV    ++    +S+G
Sbjct: 113 ELEVEDGAVVSSRVDMGTATFKTDQIPMDVEEYEFIDR----FLPVEGEDIKLT-ALSVG 167

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHAI FV DD    DL   G  +  HP+F E +N+    V S   + + TWERG G T 
Sbjct: 168 NPHAIIFV-DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTM 226

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279
           ACG+ A ASV+A   L K + +V V + GG L I+ + D   +  +M G+A   ++G L
Sbjct: 227 ACGTGATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285


>gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13]
 gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13]
          Length = 286

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 136/284 (47%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 22  IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 79

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    ++V
Sbjct: 80  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 139

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++   
Sbjct: 140 DMGMPAVGEIALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 182

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 183 DLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 242

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 243 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286


>gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
 gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
          Length = 278

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 24/285 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + ++   C +   +D         N +F    D ++LI      + D  
Sbjct: 3   FTKMQGAGNDYVYVN---CFEETVADPRQVAIQVSNRNFGIGSDGLILI--MPSTTADVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSIS-- 117
           +R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +     DG I+  
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKV 117

Query: 118 -VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHAIFFVEDD 174
            V+MG P L    IP+     + D     +G    +  R  N    SMGNPH + FV DD
Sbjct: 118 RVNMGPPRLARSEIPM-----RGDAAPQVVGEQLTILDRTFNITCASMGNPHCVIFV-DD 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +  + ++++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   
Sbjct: 172 VAGFPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTA 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A      T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 232 ACVLNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276


>gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
 gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
          Length = 364

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 137/294 (46%), Gaps = 33/294 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD---NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R        +  D +      D       D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQGQ 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RFL         K +  ET  G++  +   DG 
Sbjct: 61  G-DLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119

Query: 116 ISVDMGEPILDWKLIP--------LAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           + VDMG P L+   IP        LAR S D  DR    +             V MGNPH
Sbjct: 120 LRVDMGAPFLEPSSIPTTLPLVDGLARGSADLADR-ALEVA-----------AVGMGNPH 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +  VED L      ++G  L  H +F    N+   +V +   L++R WERG G T ACG
Sbjct: 168 VVVPVED-LNAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACG 226

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           + ACA++VA+  L   +    V + GG L I W   +  V MTG A   ++G L
Sbjct: 227 TGACATLVAAVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVL 280


>gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 286

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 146/297 (49%), Gaps = 37/297 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF--------- 55
           M+ F+KM G+GN  +VID           A   +  D    F + +    F         
Sbjct: 1   MILFSKMHGLGNDYVVID---------ESAQECIPEDKKPEFVREVCTRGFSVGADGVIF 51

Query: 56  -QDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-LVAK 109
            Q AS +  IR  I N DGSE + CGNG+RC  +F+   + ++++    ET+ GI  V  
Sbjct: 52  VQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVEL 111

Query: 110 ENRDGSI---SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           E  DG++    VDMG        IP+    ++ +DR      PV    ++    +S+GNP
Sbjct: 112 EVEDGAVVSSRVDMGTATFKTDQIPMDVEEYEFIDR----FLPVEGEDIKLT-ALSVGNP 166

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HAI FV DD    DL   G  +  HP+F E +N+    V S   + + TWERG G T AC
Sbjct: 167 HAIIFV-DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMAC 225

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279
           G+ A ASV+A   L K + +V V + GG L I+ + D   +  +M G+A   ++G L
Sbjct: 226 GTGATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282


>gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
          Length = 278

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 18/280 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM  +GN  + +D       + +D + +L+   +D         LI      S D  +
Sbjct: 3   FFKMHALGNNYVFVDT--ARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSADVGM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           RI N DGSE +SCGNG+RCV R+   R  +    F+ ET  G++ A+     + R   ++
Sbjct: 61  RIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRLVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG+P    + +   R  D+ +  R   G   +       +VSMGNPH +  V+     
Sbjct: 121 IDMGKPRFGTEAVTY-RGSDQGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVDDV 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  +  HP F + VN+    V + + +D R +ERG G+T ACG+ ACASV A  
Sbjct: 176 D-VERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALA 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                   V+V +LGG L IE  D+ HV+MTGEA    EG
Sbjct: 235 KKGFVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEG 274


>gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 279

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 23/291 (7%)

Query: 8   FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  + I D  G + + +  A+           D +++I   + A  D  +RI
Sbjct: 3   FVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSI---SVD 119
           IN DGSE + CGNG+RC  +++     M +  FT ET+ GI+  K     DG +   +++
Sbjct: 61  INADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVTIN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+P  + + IP+      +  +   +    +        + MG PH + +V+D +   D
Sbjct: 121 MGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRITS----LLMGVPHTMIYVKD-VEQVD 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F +  N++  +     ++ + TWERG G T ACG+ +CA  V S   
Sbjct: 176 LPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSFLN 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKK 289
             T R V V++  G L I++ + + +V+MTG A   +       TG+W +K
Sbjct: 236 GFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSY-------TGEWEEK 279


>gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5]
          Length = 278

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 27/286 (9%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64
           DF KM   G+  +++D+RG  +NI +  I     D N    F++++++ D +DA+    +
Sbjct: 4   DFQKMHANGDDFVIVDLRG-QENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAATQ--L 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMG 121
              N DGS + +CG+  R V   L       +R+    +T RG+L      DG ISVDMG
Sbjct: 61  TFWNSDGSMLDACGSATRGVAWKLAGNRLFFRRR----QTNRGLLTCFGELDGRISVDMG 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P+L W+ +P+A+  D +        P+       P   SMGNPH  FF+ED L   D  
Sbjct: 117 KPLLHWRDVPIAQEADTLKL------PLPGA----PSACSMGNPHCTFFIED-LEAVDAK 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G     HP+F +  N+   +V S   + LR WERG G+    GS +C +VV       
Sbjct: 166 MRGLEFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGL 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE----WEGKLDIKT 283
              +V V+  GG + + W     VF+TG         W G+L  K+
Sbjct: 226 LTSSVDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGTWIGELSQKS 271


>gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 269

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 32/283 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + I+   C +              + HF    D ++LI        D  
Sbjct: 3   FTKMQGTGNDYVYIN---CFEETVERPEELAVKVSDRHFGIGSDGLILI--CPSGQADCR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           +++ N DGSE + CGNG+RCV +F+     +++K F  ET  GI   K   +G     I+
Sbjct: 58  MKMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGGKAALIT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P +    +P     D   R    IG            +SMGNPHAI+++ D++  
Sbjct: 118 VDMGIPEVTGD-VPEPIVVD--GRSYEFIG------------ISMGNPHAIYYM-DEIDD 161

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     H  F E  N    +V     L +R WERG G T ACG+ A AS VAS 
Sbjct: 162 LDLEAIGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASV 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
              +T   V V++ GG L I W  ++ HV+MTG A + ++G+ 
Sbjct: 222 LSGRTENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEF 264


>gi|238009464|gb|ACR35767.1| unknown [Zea mays]
          Length = 350

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 138/284 (48%), Gaps = 18/284 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R       +    A   D N     D ++ +    + + D  +R
Sbjct: 71  FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 129

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG + VDMGE
Sbjct: 130 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 189

Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           PIL    IP   LA     + +    + G   H+       VSMGNPH + F  ++L   
Sbjct: 190 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVD 244

Query: 179 DL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           DL  +  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA+
Sbjct: 245 DLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAA 304

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               +  R   V + GG L IEW  D+NHV+MTG A+  + G +
Sbjct: 305 VLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348


>gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 279

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 17/281 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+K +G GN  +++D    H+ +    +     D +       L+      + D  +R  
Sbjct: 3   FSKWQGCGNDFVIVDFLD-HEPVDFAVLAREMCDRHFGVGADGLMAACPSETADVRMREF 61

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---VDMG 121
           N DG+E + CGNG+RC  R+L     + +  FT ET+ G +V +   +DG++S   VDMG
Sbjct: 62  NPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDL 180
            P+L+   IP+A        +R    P+           VSMGNPH + FV DD   + L
Sbjct: 122 IPVLEGARIPVA----GFGTERVVAQPITVAGKEYAMTCVSMGNPHCVVFV-DDADGFPL 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G     H  F   +N     V       +R WERG G+T ACG+  CA++ A     
Sbjct: 177 KQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGVLND 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK----EWEG 277
             +R  ++++ GG + + W ++ H+ MTG A++    EW G
Sbjct: 237 VLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEWPG 277


>gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 276

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLIVEAPSNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F+  ++   +   V+   + +   VSMGNPHA+  V +D+ +  +
Sbjct: 121 GAP----RLVPADIPFEATEQAVSYALDVDGKTV-DIAAVSMGNPHAVLRV-NDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HEWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276


>gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
 gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
          Length = 280

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 26/291 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + I+     +   +D         + HF    D ++ I    +   DA+
Sbjct: 3   FTKMQGAGNDYVYINCFA--EQFPADPAEVARQMSDRHFGVGGDGVIYICP-SNQGADAW 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVA----KENRDGSIS 117
           +R+ N DGSE + CGNG+RCV +F+     + +     +T  GIL      K  +   + 
Sbjct: 60  MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PI++   IP     +         G  +         VSMGNPH + FV +    
Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFEVTS----VSMGNPHCVVFVPEATDE 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  +   PMF   VN+    V S   L  RTWERG G T ACG+ A A  VA  
Sbjct: 176 LVLG-IGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWI 287
              +T R V++ +LGG L +EW++ +N ++ TG A       +++ +G+W+
Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPA-------VEVFSGEWV 278


>gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6]
 gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6]
          Length = 297

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 39/302 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---------DQIMLIHDFQDA 58
           F KM+G GN  +V+D         + A  ALS  D             DQI+++      
Sbjct: 5   FTKMQGAGNDFVVLD--------ATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTP 56

Query: 59  SVDAFIRIINC-DGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENR 112
            VD   RI N   G EV+ CGNG RC  RF     L+ +++ K    ET+  ++      
Sbjct: 57  GVDFRYRIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVK---VETVNSLIELHVEA 113

Query: 113 DGSISVDMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNP----FVVSM 162
           DG ++VDM +PI +  LIP       AR  +    + F + P+       P     V+SM
Sbjct: 114 DGRVTVDMNQPIFEHALIPFDSAGLSARPHNGHG-NGFELWPLQLPGASLPSVDVAVLSM 172

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPHA+  V D +    +A  G  +  H  F   VN    +V S   + LR +ERG G T
Sbjct: 173 GNPHAVQRVHD-VDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGET 231

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ACG+ ACA+VVA   L   +  V V+  GG L I W    H V MTG A+  + G +D+
Sbjct: 232 LACGTGACAAVVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDL 291

Query: 282 KT 283
            T
Sbjct: 292 PT 293


>gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
          Length = 281

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 8   FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G GN  +V+D+R G      + A            DQI+ I   + A   A   I
Sbjct: 9   FSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAVAAYGI 68

Query: 67  INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGS    CGNG RCV  +L      + +SF  ++  GI   +   DG  +VDMG P 
Sbjct: 69  WNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVDMGAPR 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +PLA    +       +     +F      VSMGNPHA+  V  D+   D+A  G
Sbjct: 129 FAPAQVPLAGFGAEAAEYTLELDGRRVVF----GAVSMGNPHAVIEV-GDIDAVDVAGTG 183

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L     F + VN+  A+V +   + LR +ERGVG T ACGS ACA+V +     +  R
Sbjct: 184 RALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRRGRIAR 243

Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
             +V + GG L I W  ++  + M G A   +EG+
Sbjct: 244 EATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGE 278


>gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000]
 gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 292

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 139/286 (48%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      + T +   A++   + HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGIATPIDFTPEQWRAIA---DRHFGVGADQLLLVERSTRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG
Sbjct: 62  YRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDMG 121

Query: 122 EPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLY 176
            P+ +      +P A       RD  H   +N    R  ++  VSMGNPHA+  V DD  
Sbjct: 122 APVFEAARLPFVPDALPTRVEGRDTQHALQING---RTAWLSTVSMGNPHAVQVV-DDAE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+ VA 
Sbjct: 178 AFPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAG 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GG L I W  +   V MTG A   +EG LD+
Sbjct: 238 IRRGLLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDL 283


>gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
 gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
          Length = 297

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 138/292 (47%), Gaps = 26/292 (8%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F KM G GN  +V+D       +T +   AL    + HF    DQI+++     A  D 
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQTIEMTPERARALG---DRHFGIGADQILVVERPTVADADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     +   GILV  E  D  ++VDM
Sbjct: 61  RYRIFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNP---------FVVSMGNPHAIF 169
           G      +  P A  FD         G   +  L L  P           V++ NPHA+ 
Sbjct: 121 GST----RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQ 176

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            V D++    +A  G L+  HP F+  VN    +V    ++ LR +ERG G T ACG+ A
Sbjct: 177 VV-DNVDTAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGA 235

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CA+V A          V V+  GG L + W + + + MTG A+  + G++DI
Sbjct: 236 CAAVAAGIRRGLLESPVRVQTRGGVLTVAW-NGDQLRMTGPAESVFTGQVDI 286


>gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 284

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 142/281 (50%), Gaps = 5/281 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++       VD  
Sbjct: 2   FLEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP     D+     + +   +   + N  VV+MGNPHA+  V D L   D+A
Sbjct: 122 PPKFLPDEIPFVTQVDEDIEGLYSLELADDKSI-NIDVVNMGNPHAVTIVPDVLTA-DVA 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 180 GIGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 240 LANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 273

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    N+            N HF    D I+ + +  D      
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGNLIGKEKELAQKLCNRHFSIGADGILFVRE-SDTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117
           + IIN DGS    CGNG+RC  +++   S +K      ET  G+  A  + +G     I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++MGEPI + + I   +    +K+ R+       N  +    F   MG PH I F   +L
Sbjct: 120 INMGEPIFEGEKISNEKEKIINKIIREN------NKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L  T ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYTGKSTEVMLPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
 gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 144/296 (48%), Gaps = 28/296 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASV 60
           ++F KM G+GN  +VI+     + I  D     S        +   D ++ +    D   
Sbjct: 3   LNFTKMHGLGNDYIVINEFDG-EKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKY 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----S 115
           D   RI N DGSE + CGNG+RC  +F+  R M++     ET+ G+ V++ N +     S
Sbjct: 62  DIRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKS 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAI 168
           I V MG P  + K IP+     K + D F    +    L+N         VV++GNPHA+
Sbjct: 122 IKVFMGAPTFELKDIPMVVE-GKSENDVFLDEEIE---LKNALLNSVKLSVVNVGNPHAV 177

Query: 169 FFVEDD-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            F++D+          L   G  +  H +F E +N+    + + + + + TWERG G T 
Sbjct: 178 IFMKDNNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTT 237

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           ACG+   +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++G+L
Sbjct: 238 ACGTGTTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292


>gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 277

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 140/284 (49%), Gaps = 20/284 (7%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G   + T  AI           D + ++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120
           IN DGSE + CGN +RC  ++        +++FT ET+ G++      +  I    +VDM
Sbjct: 61  INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+P    + IP+    DK+   D D      VN   +    V+ +G PH   F+ DD+  
Sbjct: 121 GKPFFKSQDIPMNVDMDKVIDVDLD------VNGETVTVSSVL-LGVPHTEVFI-DDITK 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S 
Sbjct: 173 APVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSF 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T R V V++  G L I + ++  V MTG A++ +E +L I
Sbjct: 233 EKGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276


>gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 284

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 145/282 (51%), Gaps = 19/282 (6%)

Query: 8   FAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    +   + ++  A+   S       D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---EN-RDGSISV 118
           RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+   EN +   ++V
Sbjct: 64  RIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVAV 123

Query: 119 DMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L    +P+    ++    +    G            VSMGNPH +F +  D+  
Sbjct: 124 DMGEPRLTKAELPMLGGGEEYTISETMTFGEAE----LTGTAVSMGNPHIVFPI-ADIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G ++ K P F EGVN+      +   L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              + + N+ ++V + GG L+I W  N HV MTG A+   EG
Sbjct: 239 LNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEG 280


>gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2]
          Length = 274

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 143/275 (52%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + ++ I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYP---- 116

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P    F     +  +   + +    +  VV+MGNPHA+  V D L   D+A  G  +
Sbjct: 117 KFLPNEIPFVAEQPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB]
 gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB]
          Length = 274

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 30/286 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + +P            F      +L+L            VSMGNPH +  VE  +
Sbjct: 121 PNFEPQQVP------------FRANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SV 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233
               +   G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V  
Sbjct: 168 KTAQVELLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVAC 227

Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  G L      V V + GG L I W      ++MTG A   ++G
Sbjct: 228 GIQQGILAPN---VRVDLPGGTLHISWKGAGQPLYMTGPATHVYDG 270


>gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 276

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF  L   + R      T RG +  +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P  +   IP  A+  +K    R       H  +    VVSMGNPH +  V   +    +
Sbjct: 122 VPQFEPGKIPFRAQKAEKTYLLRAQ----EHTVMCG--VVSMGNPHCVIEV-PSVADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+ V      
Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF]
 gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii]
          Length = 281

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K +P    F   + +  +   + +    +  VV+MGNPHA+  V D L   D+A
Sbjct: 122 YP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E +N    +V   + + LR +ER VG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
 gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
          Length = 277

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 132/276 (47%), Gaps = 5/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN   V+D+R     +TS+ I A S       FDQ++++       VD   
Sbjct: 3   IRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DGSEV+ CGNG RCV RF      +  F  ET RG+L      D  + V MG P 
Sbjct: 63  RIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGIPT 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP       ++ +   + P     ++    +++GNPHA+ +V        +   G
Sbjct: 123 FKPSEIPFVADDAALNYN-LPLYPDQASQIKV-GALAIGNPHAVVWVSSTAA-APVEELG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            +L  HP F   VN+  A       ++LR +ERGVG T ACG+ ACA+ +          
Sbjct: 180 PILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGLVS 239

Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            VSV + GG L I+W      V MTG A   ++G+L
Sbjct: 240 PVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGEL 275


>gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
 gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
          Length = 276

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSI 116
           D  +R+ N DGSE   CGNG+RCV +++  +   +R S   ET  G+  L      DG++
Sbjct: 50  DFQMRMFNADGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTV 109

Query: 117 S---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           S   VDMG+  L  K IP+   +D        +    +L       VSMGNPHA+ F  D
Sbjct: 110 SSVRVDMGKASLKAKDIPVETDYDDFISQPMLVRGEVYLVT----CVSMGNPHAVVFC-D 164

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ +  LA  G L  +H  F EGVN    ++   ++L +R WERG G T ACG+ ACASV
Sbjct: 165 DVDNLPLAEIGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASV 224

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+        +  V+V++LGG L I  H +  V M G A   ++G +++
Sbjct: 225 AAAIVNENCDFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIEL 274


>gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
 gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
          Length = 282

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 130/286 (45%), Gaps = 30/286 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDL 175
           P  + + +P            F      +L+L            VSMGNPH +  VE  +
Sbjct: 129 PNFEPQQVP------------FRANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SV 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233
               +   G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V  
Sbjct: 176 KTAQVELLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVAC 235

Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            +  G L      V V + GG L I W      ++MTG A   ++G
Sbjct: 236 GIQQGVLAPK---VRVDLPGGTLHISWKGAGQPLYMTGPATHVYDG 278


>gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425]
 gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425]
          Length = 280

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 30/291 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHF----DQIMLIHDFQ 56
           + F K +G+GN  ++ID R       ++A   L+ +      + HF    D ++ +    
Sbjct: 3   LQFTKYQGLGNDFILIDNR-------NEATPLLTPEQAVDICDRHFGVGADGVIFLLP-A 54

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKEN 111
               D  +RI N DGSE + CGNG+RC+ RF       +      +   T+ G +  +  
Sbjct: 55  TGETDYTMRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVR 114

Query: 112 RDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            DG ++VDMG+P L    IP  L  + +K+      +G  +         VSMGNPH I 
Sbjct: 115 SDGQVTVDMGQPRLLAGEIPTTLKPAAEKVIAQPLQVGGRSWSVT----CVSMGNPHCIT 170

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVE+ +   DL + G     HP F + +N     V   + L +R WERG G+T ACG+ A
Sbjct: 171 FVEN-VAAIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGA 229

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           CA++VA+     +    +V++ GG L IEW      V MTG A++ ++G L
Sbjct: 230 CAALVAAVLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280


>gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 269

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 135/287 (47%), Gaps = 34/287 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + +D   C      +         N HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGLGNDYVYVD---CFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQ 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI--LVAKENRDGSI- 116
           + + N DGS    CGNG+RCV ++          RK  T ET  GI  L  KE    ++ 
Sbjct: 58  MDMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQ 117

Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +VDMG P    +   +  S +   ++   IG            +SMGNPHA+ FV DD 
Sbjct: 118 LTVDMGRP---EQTSEIPESIEVDGKEYQFIG------------ISMGNPHAVLFV-DDT 161

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VA
Sbjct: 162 AAVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVA 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           S     T+  V V++LGG L IEW  + + V+MTG A + + G++ I
Sbjct: 222 SILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAI 268


>gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10]
 gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1]
          Length = 269

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 135/287 (47%), Gaps = 34/287 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G+GN  + +D   C      +         N HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGLGNDYVYVD---CFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQ 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI--LVAKENRDGSI- 116
           + + N DGS    CGNG+RCV ++          RK  T ET  GI  L  KE    ++ 
Sbjct: 58  MDMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQ 117

Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +VDMG P    +   +  S +   ++   IG            +SMGNPHA+ FV DD 
Sbjct: 118 LTVDMGRP---EQTSEIPESIEVDGKEYQFIG------------ISMGNPHAVLFV-DDT 161

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VA
Sbjct: 162 AAVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVA 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           S     T+  V V++LGG L IEW  + + V+MTG A + + G++ I
Sbjct: 222 SILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAI 268


>gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
 gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
          Length = 276

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +VID+   H +I          D +T   FDQ++++       VD 
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWG-DRHTGIGFDQLLIVEPPSRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMK-RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF L  R+  +K    ET  G++      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+ + IP       +D      G    L       +SMGNPHA+  VE+ +    +
Sbjct: 121 GPPRLEPREIPFQAENAALDYQVEVDGCEVELA-----ALSMGNPHAVLRVEN-VESAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W   +  V MTG A + +EG++ +
Sbjct: 235 WMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276


>gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
 gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
          Length = 281

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++      +VD  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP      +   D   I   N+  L    VV+MGNPHA+  V D +   D+A
Sbjct: 122 YPKFLPQEIPFIADAPEALYD---IALANNEQLTID-VVNMGNPHAVTIVPD-VITADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F + VN    ++   +   LR +ERGVG T ACG+ ACA+ ++      
Sbjct: 177 RLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +V +++ GG L IEW + + V+MTG     +EG++D+
Sbjct: 237 LDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDL 276


>gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 276

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D NT   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRNTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F    +   +   V+   ++    VSMGNPHA+  V DD+    +
Sbjct: 121 GAP----RLVPADIPFQAPAQADSYTLDVDGRQVQL-AAVSMGNPHAVLRV-DDINSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14]
 gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14]
          Length = 287

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 37/300 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD- 57
           S+ + F KM+G GN  + ++         S A    S     HF    D ++LI    D 
Sbjct: 2   SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWS---KYHFKIGSDGLVLIGRPSDP 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----EN 111
           A  D  + I N DGSE   CGN  RC+ ++L  +    ++    ET+ G+ + K    +N
Sbjct: 59  AKADYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDN 118

Query: 112 RDG------SISVDMGEPILDWKL---IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           ++       S++VDM EP L+ K      + ++    DR            + N   VSM
Sbjct: 119 KETGKTEVESVTVDMLEPQLEEKAQYNAEVGKNIQIEDR------------IFNGTFVSM 166

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPH + FV +D+   D+A +G+ L  HP F +  N+  A V +   +  R WERG G+T
Sbjct: 167 GNPHYVIFV-NDIDTIDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGIT 225

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ACG+ ACA+ VA+    +  R   + M GG L IEW  +NNH++MTG A   +EG++++
Sbjct: 226 LACGTGACATAVAAALTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIEL 285


>gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
 gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
          Length = 276

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    A           FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K+   ET  G++  +   DG + V+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+   +P       +       G    L       +SMGNPHA+  V D++    + 
Sbjct: 122 APRLEPAQVPFQAEQAALTYRVDVEGQSVELA-----ALSMGNPHAVLRV-DNVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
 gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
          Length = 269

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 135/284 (47%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    ++V
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++   
Sbjct: 123 DMGMPAVGEMALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 166 GLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2]
 gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 283

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 24/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C +   ++         + HF    D ++ I     A  D  
Sbjct: 3   FTKMHGCGNDYVYVN---CLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGSE   CGNG+RC+ +++       + + T ET  GI    L  ++ +   + 
Sbjct: 58  MAMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDM  PI     IP    +D +D   D+  I         N   +SMGNPH + FV D +
Sbjct: 118 VDMEAPITKASQIPAI--YDDLDEVIDQPVIVDGKEY---NITCISMGNPHGVVFV-DSV 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+   G     HPMF + VN     +   +++ +R WERG G T ACG+ ACAS  A
Sbjct: 172 ADIDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYA 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           S    KT + V V +LGG L IE+  + + +FMTG A   ++G++D+
Sbjct: 232 SYLNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278


>gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 223

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +P    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPP----RFVPEEIPFEAAEQAISYTVDVDGQNIEMA-AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ A
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223


>gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
 gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
          Length = 279

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 148/285 (51%), Gaps = 20/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  ++++     + +  D         +  F    D ++L+   + A +   
Sbjct: 3   FVKMHGLGNDFVLVN--AMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQARLR-- 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGSIS 117
           +RI N DGSE + CGNG+RC  R++  T   + +    ET+ GI    L+ +  R   + 
Sbjct: 59  MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+ + IP+A +   +  +      VN    R    VSMGNPH +FFVED +  
Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIE---VNGETWRG-TCVSMGNPHCVFFVED-VTG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++  HP+F    N+   +V + E L +R WERG G T ACG+ ACA+ VA  
Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              ++NR V+V +  G L IEW   +NHV+MTG A + + G   +
Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPL 278


>gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315]
 gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315]
          Length = 270

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 125/277 (45%), Gaps = 18/277 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG  HD    +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 3   IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVISDGDDAA- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I V+M
Sbjct: 62  -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ IP A + D +                 P   SMGNPH  FFV DD    D+
Sbjct: 121 GAPRLGWQDIPFAEAADTLALP----------LPGTPAACSMGNPHCTFFV-DDPDTLDV 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP+F +  N+   RV     + LR WERG G+    GS +C +VV      
Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +  V V   GG + + W     VF++G     + G
Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSG 266


>gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
 gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
          Length = 282

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 22/244 (9%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGI 105
           D ++ I      + D   RI N DGSE + CGNG+RC  +++  R +K+     ET  G+
Sbjct: 39  DGVIFIQKPSSNNYDVKFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGL 98

Query: 106 LV----AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-- 159
            V     +++R   I V MG+P    K IP+    ++   +R          L+NP++  
Sbjct: 99  RVCELEVEDDRVKKIRVYMGKPSFKCKDIPVKSEKEEFINERAE--------LKNPYLKE 150

Query: 160 -----VSMGNPHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR 213
                VS+GNPHAI FV+D +     L   G+ +   P+F E +N+   +V + + + + 
Sbjct: 151 VNITAVSVGNPHAIIFVDDLEKIREHLDVIGSEIENLPIFPERINVHFVKVLNDKEIKIL 210

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           TWERGVG T ACG+ A AS V S  L  T   V V + GG L IE  D+   +M G+A  
Sbjct: 211 TWERGVGYTMACGTGATASAVVSNRLGFTKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVM 269

Query: 274 EWEG 277
            ++G
Sbjct: 270 VYDG 273


>gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana)
           tropicalis]
          Length = 289

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 28/293 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIR- 65
           M+G GN  +V+D       +++     L+   + H     DQI+ +      +V A I  
Sbjct: 1   MQGAGNDFIVLDETQGRLGLSAAQYRFLA---DRHLGVGADQILSVRAPTPQAVAAGIDF 57

Query: 66  ---IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  RF+  +    + S   +T  G++  +   DG +SVDM
Sbjct: 58  EYVIHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDM 117

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFH--------IGPVNHLFLRNPFVVSMGNPHAIFFV 171
           G P    + +P  A       R +          I P  H+ +    + SMGNPHA+  V
Sbjct: 118 GLPRFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIA---IASMGNPHAVLLV 174

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    +A++G L+  H  F   VN    ++     + LR +ERG G T ACG+ ACA
Sbjct: 175 -DDVDTAPVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACA 233

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIK 282
           +VV+   L   +  V V   GG L I W    ++ VF+TG A   +EG++++ 
Sbjct: 234 AVVSGIRLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286


>gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
 gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
          Length = 272

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 56/301 (18%)

Query: 3   SSMVDFAKMEGIGN---------------KILVIDMRGCHDNITSDAINALSTDDNTHFD 47
           + ++ F KM G GN               + L ++    H  I SD +  + + D   F 
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKADFS 61

Query: 48  QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105
                           +RI N DGSE + CGN  RC+ ++L       + + T +T+ GI
Sbjct: 62  ----------------MRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGI 105

Query: 106 LVAK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            + K    + +  +++VDMG P  D K  P+  +  K                     VS
Sbjct: 106 KILKLHVEDGKVNTVTVDMGRP-ADMKEQPIEANGQKF----------------TGTTVS 148

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH + FVED +   +L S G  L  HP+F + +N+  A+V     + +R WERG G+
Sbjct: 149 MGNPHLVIFVED-IKDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGI 207

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           T ACG+ ACA+ VA+    K+ R   + M GG L IEW +  +HV+MTG A + ++G++ 
Sbjct: 208 TQACGTGACATAVAAALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVI 267

Query: 281 I 281
           I
Sbjct: 268 I 268


>gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
 gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
          Length = 302

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 38/301 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF-------------DQIMLI 52
           ++F KM G+GN  +VI+          D I  +  +D   F             D ++ +
Sbjct: 8   LEFTKMHGLGNDYIVIN--------EFDGI-KIKEEDKEEFSRKICKRGFSIGADGVIYV 58

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN 111
               +   D   RI N DGSE + CGNG+RC  +++  R +K+     ET  G+ V++ +
Sbjct: 59  QKPTNDKYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMD 118

Query: 112 RDG----SISVDMGEPILDWKLIPLARSFDKMDRDRF---HIGPVNHLFLRNPF-VVSMG 163
            +      I V MG P    K IP+ +   K + D F    I   N L       VV++G
Sbjct: 119 IENDIVKKIKVYMGAPTFQLKDIPM-KVEGKSENDEFLNEAIKLNNDLIDEIKLSVVNVG 177

Query: 164 NPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           NPHA+ FVED     D    +L + G  +  H +F E +N+    V +   + + TWERG
Sbjct: 178 NPHAVIFVEDNNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERG 237

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            G T ACG+   +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++GK
Sbjct: 238 AGYTTACGTGTTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGK 296

Query: 279 L 279
           L
Sbjct: 297 L 297


>gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383]
 gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 266

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 18/275 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHDFQDASVDA 62
           + F KM   G+   ++D+RG    I  D   A    D      F+Q+ ++ D  DA+  A
Sbjct: 3   IGFHKMHANGDDFAIVDLRGATHAI--DGRLARQMGDRKRGIGFNQLAVVSDCDDAA--A 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS + +CG+  R V   L       S    T RG LV     +  ISV+MG 
Sbjct: 59  RVAFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGT 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+  W+ +PLA + D +                 P   +MGNPH  FFV DDL   D+A+
Sbjct: 119 PLTGWRDVPLAEALDTLALP----------LPGAPAACNMGNPHCTFFV-DDLRAIDVAA 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP+F +  N+   +V     + LR WERG G+    GS +C +VV        
Sbjct: 168 LGPAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLL 227

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +  V V+  GG + ++W     V ++G     + G
Sbjct: 228 DDIVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSG 262


>gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
 gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
          Length = 281

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G+GN  +VID       +  + I   +   N HF    DQ++++   + A   
Sbjct: 3   IHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWA---NRHFGIGFDQLLIVEPPKTADTL 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC  R++  +     K     T  G +V   N  G ++VD
Sbjct: 60  FTYRIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVD 119

Query: 120 MGEPILDWKLIPL-----ARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           MG P+     IP      A S+     D   + I             VSMGNPHA+  VE
Sbjct: 120 MGRPMFTPTNIPFITECEATSYPLTLDDGSEWVID-----------AVSMGNPHAVLEVE 168

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            ++    ++  G ++  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+
Sbjct: 169 -NVDTAPVSHLGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAA 227

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279
           VV+    ++ +    V + GG L + W     + V MTG A+  +EG++
Sbjct: 228 VVSGIRRNRLDSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQI 276


>gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7]
          Length = 269

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 135/284 (47%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++ M    DN    +I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI--LVAKENRD--GSISV 118
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI  L  K  R+    ++V
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    + +    +                +    V+SMGNPH + FV D++   
Sbjct: 123 DMGMPAVGEMALEVEAGGE----------------IYTGTVISMGNPHLVIFV-DEMDQV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA   
Sbjct: 166 GLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVV 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 226 RGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays]
 gi|194704094|gb|ACF86131.1| unknown [Zea mays]
 gi|223948299|gb|ACN28233.1| unknown [Zea mays]
          Length = 353

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 137/287 (47%), Gaps = 21/287 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R       +    A   D N     D ++ +    + + D  +R
Sbjct: 71  FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 129

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG + VDMGE
Sbjct: 130 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 189

Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-- 176
           PIL    IP   LA     + +    + G   H+       VSMGNPH + F  ++L   
Sbjct: 190 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVL 244

Query: 177 ---HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                 L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA V
Sbjct: 245 QVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVV 304

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+    +  R   V + GG L IEW  D+NHV+MTG A+  + G +
Sbjct: 305 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351


>gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
 gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
          Length = 277

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G   + T  AI           D + ++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120
           IN DGSE + CGN +RC  ++        +++FT ET+ G++      +  I    +VDM
Sbjct: 61  INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G+P    + IP+  + DK +D D    G    +       V +G PH   F+ DD+    
Sbjct: 121 GKPFFKAQDIPMNVNMDKVIDVDLDINGETVTVS-----SVLLGVPHTEVFI-DDITKAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS + S   
Sbjct: 175 VTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFEK 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             T R V V++  G L I + ++  V MTG A++ +E +L I
Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276


>gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
 gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
          Length = 278

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 28/289 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C     DN    AI   + +     D ++LI     A  D  
Sbjct: 3   FTKMHGAGNDYVYVN---CFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116
           +R+ N DGSE + CGNG+RCV ++      + +K  + ET  GIL  +      N+   +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKV 117

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVE 172
            V+MG P L    IP+   +  K+  +  +I       L   F     SMGNPH + FV 
Sbjct: 118 RVNMGRPRLTRSEIPMTGEAGAKVINEPLNI-------LHTTFHITCASMGNPHCVIFV- 169

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+ ++ +  +G ++  H +F    N+   ++ S   +  RTWERG G T ACG+ A A 
Sbjct: 170 DDVENFQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAV 229

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            VA      T + +   + GG L +EW ++  ++MTG A + + G+++I
Sbjct: 230 CVAGALNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278


>gi|194700330|gb|ACF84249.1| unknown [Zea mays]
          Length = 308

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 137/287 (47%), Gaps = 21/287 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R       +    A   D N     D ++ +    + + D  +R
Sbjct: 26  FVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGA-DYTMR 84

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG + VDMGE
Sbjct: 85  IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGE 144

Query: 123 PILDWKLIP---LARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-- 176
           PIL    IP   LA     + +    + G   H+       VSMGNPH + F  ++L   
Sbjct: 145 PILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVT-----CVSMGNPHCVTFGANELKVL 199

Query: 177 ---HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                 L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA V
Sbjct: 200 QVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVV 259

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           VA+    +  R   V + GG L IEW  D+NHV+MTG A+  + G +
Sbjct: 260 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306


>gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
 gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
          Length = 273

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ +   +++  DA 
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESGTDAQ 57

Query: 64  IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115
           I+  IIN DGS    CGNG+RC  +++   S +K      ET  G+  A    +E++   
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L  T ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613]
          Length = 273

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ +   +++  DA 
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESDTDAQ 57

Query: 64  IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115
           I+  IIN DGS    CGNG+RC  +++   S +K      ET  G+  A    +E++   
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L  T ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
 gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group]
          Length = 354

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 134/285 (47%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R       +    A   D N     D ++ +    + + D  +R
Sbjct: 72  FVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGA-DYTMR 130

Query: 66  IINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF   L +     SF   T  G+++ +   DG + VDMG+
Sbjct: 131 IFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQ 190

Query: 123 PILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--Y 176
           PIL    IP      K    +  D    G    +       VSMGNPH + F   +L   
Sbjct: 191 PILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT-----CVSMGNPHCVTFGTKELKVL 245

Query: 177 HYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           H D   L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA V
Sbjct: 246 HVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVV 305

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           VA+    +  R   V + GG L IEW  D+NH++MTG A+  + G
Sbjct: 306 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 350


>gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21]
 gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21]
          Length = 278

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + ++   C +    D         N +F    D ++LI   + A  D  
Sbjct: 3   FTKMQGAGNDYVYVN---CFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSI 116
           +R+ N DGSE + CGNG+RCV ++      + +   T ET  GIL  +       +   +
Sbjct: 58  MRMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175
            V+MG P L  K IP+         +R    P+N L    N    SMGNPH + FV DD+
Sbjct: 118 RVNMGPPRLTRKEIPMLGE----PEERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDV 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A
Sbjct: 173 DSFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 T + +   + GG L +EW ++ +++MTG A + + G++ +
Sbjct: 233 CVLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278


>gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
 gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
          Length = 273

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ +   +++  DA 
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFV---RESDTDAQ 57

Query: 64  IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115
           I+  IIN DGS    CGNG+RC  +++   S +K      ET  G+  A    +E++   
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L  T ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065]
          Length = 273

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 138/284 (48%), Gaps = 23/284 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ + +  D      
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFVRE-SDTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++   S +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI----SNEKEKIINKSIRENNKEYFITAF--HMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
 gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
          Length = 277

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 138/282 (48%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
             KM G+GN  IL  D +G   + T  AI           D + ++      + D  +RI
Sbjct: 3   LTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAIL--VPSETCDVRMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI----SVDM 120
           IN DGSE + CGN +RC  ++        +++FT ET+ G++      +  I    +VDM
Sbjct: 61  INSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G+P    + IP+  + DK +D D    G    +       V +G PH   F+ DD+    
Sbjct: 121 GKPFFKAQDIPMNVNMDKVIDVDLNVNGETVTVS-----SVLLGVPHTEVFI-DDITKAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS   S   
Sbjct: 175 VTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFEK 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             T R V V++  G L I + ++  V MTG A++ +E +L I
Sbjct: 235 GLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPI 276


>gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
 gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
          Length = 302

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 147/301 (48%), Gaps = 39/301 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHF--DQIMLIHDFQDASVD 61
           ++F KM G  N  L ID   C  N       ++   +D +T    D I+LI   + A  D
Sbjct: 12  INFTKMHGCKNDYLYID---CTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSKAA--D 66

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFT-----FETIRGILVAKEN 111
             +RI N DGSE + CGNG+RCV +F     LT + + +  T      E   GI+   EN
Sbjct: 67  FRMRIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGII--PEN 124

Query: 112 R---------DGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           R         +G++   +VDMG PI+    IP+  + ++   +  +I   +  F      
Sbjct: 125 RIKVLQLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKDWYFT----C 180

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD    DL   G     + +F    N    +V S   L++R WERG 
Sbjct: 181 VSMGNPHAVTFV-DDTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGS 239

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
           G T ACG+ ACAS  A+   +     V+V +LGG L+I++     H+FMTG  +  + G 
Sbjct: 240 GETLACGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGS 299

Query: 279 L 279
           +
Sbjct: 300 I 300


>gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272]
          Length = 279

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103
           FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF  L     ++     T  
Sbjct: 47  FDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTAN 106

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G +V     D  + V+MGEP  +   +P     +K ++          +      VVSMG
Sbjct: 107 GRMVLTVTDDDLVRVNMGEPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMG 161

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPH +  V DD+    + + G +L  H  F E  N+   +V   E + LR +ERG G T 
Sbjct: 162 NPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQ 220

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           ACGS ACA+V         +  V V++ GG L I W    H ++MTG A   ++G
Sbjct: 221 ACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 275


>gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 141/297 (47%), Gaps = 29/297 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA--FIR 65
           F KM G+GN  ++  M+    N    A            D +++    ++++++A   +R
Sbjct: 3   FEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQMR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----------LVAKENRD 113
           I N DGSE + CGN +RC+ ++L  T     K     T  GI          L+ + N  
Sbjct: 61  IYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEINLS 120

Query: 114 GSI-------SVDMGEPILDWKLIPLARSFDKMD--RDRFHIGPVNHLFLRNPFVVSMGN 164
           G +        V+M +P+L    IPLA   D+ D  R R    P    +L     VS G 
Sbjct: 121 GMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYGIYYLTE---VSTGP 177

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV++ L    L   G ++ KH +F  G N+   +V S   L ++ WERG G T A
Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
           CG+ ACA VVA+      N    V++ GG L I W +N   ++M G A+  + G+L+
Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294


>gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 286

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 146/280 (52%), Gaps = 26/280 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K  G+GN  +V+D       +T D I  +    + H+    D I++ ++   A  D  
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFELTQDLIKKIC---DVHYGIGSDGILVKYNSDVA--DFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115
           +RI N DGSE +  GNG+R   +FL     + ++ FT ET  GI+ AK   +NR G    
Sbjct: 62  LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKI 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG+ I + K IP+    ++   ++  +G            VS+GNPH +  ++++L
Sbjct: 122 ITVDMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEF----EVSCVSVGNPHCVI-IKENL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C   VA
Sbjct: 177 DEEEIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCG--VA 234

Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           S  + K  T+R + +KM+GG L I   ++ ++ MTGE ++
Sbjct: 235 SVLVKKGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQE 274


>gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
 gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
          Length = 301

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 138/290 (47%), Gaps = 42/290 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHF--DQIMLIHDFQDASVD 61
             KM G+GN  L +D  G    +  D    A+    +D N     D ++L+   ++A   
Sbjct: 17  LTKMHGLGNNYLFLD--GLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET----IRGILVAKENRDGS 115
             +RI N DGSE + CGNG+RC+ R +  R   + + FT ET    IR  L  +     +
Sbjct: 75  FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV--------------S 161
           ++VDMG P L+   IP+A             GP     +  P  V              S
Sbjct: 135 VTVDMGVPRLERGAIPMA-------------GPAGERAVEVPLEVEAAGERRTFTVTALS 181

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +    DD+   DLA  G     HP F + VN    +V S + + +R WERG G 
Sbjct: 182 MGNPHCVV-FVDDVAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGP 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           T ACG+ ACA  VA     +T R V+V++ GG L I W ++ HV+MTG A
Sbjct: 241 TLACGTGACAVAVAGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPA 290


>gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic;
           Short=DAP epimerase; Flags: Precursor
 gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group]
          Length = 357

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 134/285 (47%), Gaps = 21/285 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R       +    A   D N     D ++ +    + + D  +R
Sbjct: 75  FVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGA-DYTMR 133

Query: 66  IINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF   L +     SF   T  G+++ +   DG + VDMG+
Sbjct: 134 IFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQ 193

Query: 123 PILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--Y 176
           PIL    IP      K    +  D    G    +       VSMGNPH + F   +L   
Sbjct: 194 PILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT-----CVSMGNPHCVTFGTKELKVL 248

Query: 177 HYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           H D   L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA V
Sbjct: 249 HVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVV 308

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           VA+    +  R   V + GG L IEW  D+NH++MTG A+  + G
Sbjct: 309 VAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 353


>gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
 gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
          Length = 268

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 16/245 (6%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           D ++LI   + A V   +R+ N DGSE +SCGNG+RCV ++      +    FT ET+ G
Sbjct: 28  DGMILICPSEVAPVK--MRMFNSDGSEGKSCGNGLRCVAKYAYEHKLVAETVFTIETLAG 85

Query: 105 ILVAKENRDGSI----SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           I+ A+   +  I     +DMG P L    +P L        R+ F     NH ++     
Sbjct: 86  IVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGETPFIREDFLYN--NHRYVFTG-- 141

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHA+ FV DD+    L + G +L  H MF E VN+    + +   ++ R WERG 
Sbjct: 142 VSMGNPHAVIFV-DDVEEAPLTTLGPVLETHEMFPERVNVEFIEIVNGNEMNFRVWERGS 200

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I W +  +V M G A+    G
Sbjct: 201 GITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDLMIAWAEEGNVLMKGPAEVICRG 260

Query: 278 KLDIK 282
             + K
Sbjct: 261 VYEYK 265


>gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
 gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
          Length = 298

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 116/240 (48%), Gaps = 36/240 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC+ RF   L   ++ +S+   T+ G ++ +   DG ++
Sbjct: 67  DYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVA 126

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV----------SMGNP 165
           VDMG P L    +P                PVN     ++ P VV          SMGNP
Sbjct: 127 VDMGPPTLKGAEVPTKL-------------PVNADGAVVKQPLVVDGRTWLVTCVSMGNP 173

Query: 166 HAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           H + F E D       +    L   G L   H +F    N    +V S   L +R WERG
Sbjct: 174 HCVTFGEQDAKGVIKHVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERG 233

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            G T ACG+ ACA VVA+    +  R   V + GG L IEW + NNHV+MTG AK  + G
Sbjct: 234 AGPTLACGTGACAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293


>gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2]
          Length = 274

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 142/275 (51%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + +  I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP---- 116

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K +P    F   +    +   + +    +  VV+MGNPHA+  V D L   D+A  G  +
Sbjct: 117 KFLPNEIPFVAEEPKALYTLELANDQNISIDVVNMGNPHAVTIVPDVLT-ADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
 gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
          Length = 276

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    A           FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  +   DG + V+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + +P       ++      G    L       +SMGNPHA+  V D+     + 
Sbjct: 122 APRLQPEQVPFQAEQAALNYRVDVDGQSVELA-----ALSMGNPHAVLRV-DNTDDAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 271

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 16/278 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M+G+GN  +V+D       +T  A+  L+   + HF    DQ++L+     + +D   RI
Sbjct: 1   MQGLGNDFVVLDGVRQSIELTESAVRQLA---DRHFGIGCDQLLLVEKSDRSDIDFRYRI 57

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC VRF+  +    +     ET +GI++ +   +G ++VDMG P+
Sbjct: 58  FNADGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPV 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D   IP       +       G V  +       +SMGNPHA+  VE+ +    + + G
Sbjct: 118 FDPSEIPFDSDQPALTYPLDLDGNVVEIS-----AISMGNPHAVQVVEN-IETAPVETQG 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H  F   VN    +V     + LR +ERG G T ACG+ ACA+ VA       + 
Sbjct: 172 PLIEHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDH 231

Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            V+V   GG L+I+W    H V MTG A   + G++++
Sbjct: 232 TVTVSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIEL 269


>gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
 gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
          Length = 281

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      +    I  L+  +    FDQ++++      S D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  +F+  R    +     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP      +   D   +     L +    VV+MGNPHA+  V D +   D+A
Sbjct: 122 YPKFLPQEIPFVADAPESLYD-IDLAGGEKLTID---VVNMGNPHAVTIVPD-VIAADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F   VN    ++   +   LR +ERGVG T ACG+ ACA+ ++      
Sbjct: 177 RIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  V +++ GG L IEW + + V+MTG     +EG+LD++
Sbjct: 237 LSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277


>gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
 gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
          Length = 279

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 136/283 (48%), Gaps = 21/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+K +G GN  +++D    H+ +    +     D +       L+      + D  +R  
Sbjct: 3   FSKWQGCGNDFVIVDFLD-HEPVDFAVLAREMCDRHFGVGADGLMAACPSETADVRMREF 61

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---VDMG 121
           N DG+E + CGNG+RC  R+L  +  + +  FT ET+ G +V     +DG++S   VDMG
Sbjct: 62  NPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLYHY 178
            P+L+   IP+A    +      H+     +     +    VSMGNPH + FV DD   +
Sbjct: 122 IPVLEGARIPVAGFGTE------HVVAQPIMVAGKEYAMTCVSMGNPHCVVFV-DDADGF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G     H  F   +N     V       +R WERG G+T ACG+  CA++ A   
Sbjct: 175 PLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK----EWEG 277
            +  +R  ++++ GG + + W ++ H+ MTG A++    EW G
Sbjct: 235 NNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEWPG 277


>gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 270

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 141/298 (47%), Gaps = 56/298 (18%)

Query: 3   SSMVDFAKMEGIGN---------------KILVIDMRGCHDNITSDAINALSTDDNTHFD 47
           + ++ F KM G GN               + L ++    H  I SD +  + + D   F 
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKADFS 61

Query: 48  QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105
                           +RI N DGSE + CGN  RC+ ++L       + + T +T+ GI
Sbjct: 62  ----------------MRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGI 105

Query: 106 LVAK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            + K    + +  +++VDMG P  D K  P+  +  K                     +S
Sbjct: 106 KILKLHVEDGKVNTVTVDMGRP-ADMKEQPIEANGQKF----------------TGTTLS 148

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH + FVED +   +L S G  L  HP+F + +N+  A+V     + +R WERG G+
Sbjct: 149 MGNPHLVIFVED-IKDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGI 207

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           T ACG+ ACA+ VA+    K+ R   + M GG L IEW +  +HV+MTG A + ++G+
Sbjct: 208 TQACGTGACATAVAAALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265


>gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822]
 gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis]
          Length = 303

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 139/294 (47%), Gaps = 26/294 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M +F KM G GN  +V+D  G   +I      A +  D  HF    DQI+L+     A  
Sbjct: 8   MWNFTKMHGAGNDFVVLD--GVRQDIAMTPERARALADR-HFGIGADQILLVEPATQADA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++V
Sbjct: 65  DFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPF---------VVSMGNPHA 167
           DMG    D   +P    FD         G   V +L +  P           V++ NPHA
Sbjct: 125 DMGSTRFDPPSLP----FDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHA 180

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  V DD+    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+
Sbjct: 181 VQVV-DDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGT 239

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            ACA+V A       +  V V   GG L ++W +   + MTG A   + G++DI
Sbjct: 240 GACAAVAAGVRRGLLDSPVRVHTRGGMLTVDW-NGERLRMTGPAISVFSGQVDI 292


>gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G]
          Length = 279

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103
           FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF  L     ++     T  
Sbjct: 47  FDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTAN 106

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G +V     D  + V+MGEP  +   +P     +K ++          +      VVSMG
Sbjct: 107 GRMVLTVTDDDLVRVNMGEPNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMG 161

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPH +  V DD+    + + G +L  H  F E  N+   +V   E + LR +ERG G T 
Sbjct: 162 NPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQ 220

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           ACGS ACA+V            V V++ GG L I W    H ++MTG A   ++G
Sbjct: 221 ACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDG 275


>gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 288

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 26/280 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K  G+GN  +VID       IT D I  +    + H+    D I++   +  +  D  
Sbjct: 6   FVKSHGLGNDYIVIDSENITFEITQDFIKKIC---DVHYGIGSDGILV--KYPSSVADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115
           +RI N DGSE +  GNG+R   +FL       ++ FT ET  G++ AK   +N+ G    
Sbjct: 61  LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKV 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG+ I +   IP+     +   ++  +G   +        VS+GNPH +  ++ +L
Sbjct: 121 ITVDMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEY----EVNCVSVGNPHCVI-IKKEL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC--ASV 233
              ++ ++G+L+  HP+F   +N+   +  S +  ++  WERG G T A GS++C  ASV
Sbjct: 176 NEEEIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASV 235

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +    L K +  +++KM+GG L I    + ++ MTGE ++
Sbjct: 236 LVKKGLAKND--ITIKMIGGELKITVDKDWNIRMTGEVQE 273


>gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 277

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 20/282 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C      +         + H+    D +++I+    A  D  
Sbjct: 3   FTKMQGIGNDYVYVN---CLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  ++ +   + 
Sbjct: 58  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  
Sbjct: 118 VDMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRMT----CVSMGNPHAVVFIDQDVKE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA  
Sbjct: 174 FPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
               T   V+VK+LGG L I+W  + N V+MTG A+  ++G+
Sbjct: 234 LNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275


>gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 274

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 4/260 (1%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           KM+G+GN  ++ID R  + N++ D I  +   D    DQ++ I +      DA +   N 
Sbjct: 7   KMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKN--SGKKDAELEFYNS 64

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGNG RCV   L+     K     T  G L +K   +  +  ++G    +W  
Sbjct: 65  DGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKTNWDE 124

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL +  +  + +   I   N+  +     +++GNPH +FF+ DD+  YDL   G  +  
Sbjct: 125 IPLKKDLNTKNLNIKIISKNNNEHIGGT-SINVGNPHVVFFI-DDIEDYDLKKIGPEIEN 182

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           H  F E  N+++A+V +   + ++ WERG GLT ACG+AACA+VVA+     T++   V+
Sbjct: 183 HNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQADVE 242

Query: 250 MLGGGLLIEWHDNNHVFMTG 269
              G L I    +N + M G
Sbjct: 243 FALGKLTISIDKDNSIHMKG 262


>gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
 gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
          Length = 276

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 16/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F+K  G+GN  ++++      N   D   +     + HF    D ++ +     ++ +
Sbjct: 1   MQFSKWHGLGNDFVIVEP---EKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPLGGSAFE 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVD 119
             +RI N DG+E + CGN  RCV  ++          FE  T  GI+  K   +GS+ VD
Sbjct: 58  --MRIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVD 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEP L    IP+A        +   I      F  +   VSMGNPHA+ FV D +   +
Sbjct: 116 MGEPHLLRGEIPVAGD-PASGAENLAIELPGRQF--SAVGVSMGNPHAVIFVPD-INAVE 171

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L  +G  +  H +F    N+    V S   + +R WERG G+T ACG+ +CA+ VA    
Sbjct: 172 LEKWGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVT 231

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
            +T R ++V + GG L I++  N NHV+MTG A + + G+
Sbjct: 232 GRTARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQ 271


>gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
          Length = 286

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 150/283 (53%), Gaps = 19/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+ G+GN  + ++     ++++   +  L+   +D N       LI        D  +
Sbjct: 3   FTKLHGLGNDYVYVNC--FEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERADFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSIS 117
           R+ N DGSE ++CGNG+RCV +++      ++ +FT ET+ G +     +  + R   ++
Sbjct: 61  RVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMGEP  +   IP+    ++  R+    +G            VSMGNPHAI FV D++ 
Sbjct: 121 IDMGEPRFERAAIPMTGIPEEQVREEGIEVGGTAFTMT----AVSMGNPHAILFV-DEVK 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G ++  H  F E  N+   ++ + E +  R WERG G+T ACG+ ACA+ VA+
Sbjct: 176 EEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAVAA 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
               KT R V+V + GG L IEW + +N V+MTG A + + G+
Sbjct: 236 HLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGE 278


>gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 288

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+  GN  + ID    H NIT+    A    D  HF    D ++LI        D  
Sbjct: 7   FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I 
Sbjct: 62  MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174
            D+GEP L+ K+IP+  + D+     F   PV    L   F    VS GNPH   FV D 
Sbjct: 122 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 173

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +   D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +V
Sbjct: 174 VADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           VA     +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281


>gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 284

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+  GN  + ID    H NIT+    A    D  HF    D ++LI        D  
Sbjct: 3   FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I 
Sbjct: 58  MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174
            D+GEP L+ K+IP+  + D+     F   PV    L   F    VS GNPH   FV D 
Sbjct: 118 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 169

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +   D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +V
Sbjct: 170 VADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 229

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           VA     +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 230 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205]
 gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205]
          Length = 284

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH--DFQDASVDA 62
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++   DF DA  D 
Sbjct: 3   LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP      +     + +G  ++  + N  VV+MGNPHA+  V D L   D+
Sbjct: 121 GPPKFLPAEIPFLTDEHEDTEGLYKLGLADNKSI-NIDVVNMGNPHAVTIVPDVLT-ADV 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F   VN    ++   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 179 AGIGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 238

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                V V++ GG L I W + + V+MTG     ++ +LD++
Sbjct: 239 LLANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280


>gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 284

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 140/288 (48%), Gaps = 28/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+  GN  + ID    H NIT+    A    D  HF    D ++LI        D  
Sbjct: 3   FTKMQAFGNDYVYID--AIHQNITNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I 
Sbjct: 58  MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174
            D+GEP L+ K+IP+  + D+     F   PV    L   F    VS GNPH   FV D 
Sbjct: 118 ADIGEPRLNTKVIPVNTNLDQ-----FVEQPVE--VLDKTFHITAVSWGNPHCAMFV-DS 169

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +   D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +V
Sbjct: 170 VADLDVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAV 229

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           VA     +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 230 VAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS]
          Length = 303

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 139/294 (47%), Gaps = 26/294 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M +F KM G GN  +V+D  G   +I      A +  D  HF    DQI+L+     A  
Sbjct: 8   MWNFTKMHGAGNDFVVLD--GVRQDIAMTPERARALADR-HFGIGADQILLVEPATRADA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++V
Sbjct: 65  DFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPF---------VVSMGNPHA 167
           DMG    D   +P    FD         G   V +L +  P           V++ NPHA
Sbjct: 125 DMGSTRFDPPSLP----FDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHA 180

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  V DD+    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+
Sbjct: 181 VQVV-DDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGT 239

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            ACA+V A       +  V V   GG L ++W +   + MTG A   + G++DI
Sbjct: 240 GACAAVAAGVRRGLLDSPVRVHTRGGMLTVDW-NGERLRMTGPAISVFSGQVDI 292


>gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
 gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
          Length = 277

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 141/282 (50%), Gaps = 20/282 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C      +         + H+    D +++I+    A  D  
Sbjct: 3   FTKMQGIGNDYVYVN---CLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  ++ +   + 
Sbjct: 58  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  
Sbjct: 118 VDMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRMT----CVSMGNPHAVVFIDQDVKE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA  
Sbjct: 174 FPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
               T   V+VK+LGG L I+W  + N V+MTG A+  ++G+
Sbjct: 234 LNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275


>gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 270

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 143/286 (50%), Gaps = 33/286 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + I+   C + I            + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYIN---CFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS---IS 117
           +R+ N DGSE Q CGNG+RCV +++     +++  F  ET  GI   K    DG    I+
Sbjct: 58  MRMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRIT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P +  + +P     + M+ +   IG            +SMGNPHAI+++ D +  
Sbjct: 118 VDMGVPEVTSQ-VPEPIWVNGMEYE--FIG------------ISMGNPHAIYYM-DFIDG 161

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     H  F E  N    +V +   + +R WERG G T ACG+ A AS VAS 
Sbjct: 162 LDLEAIGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASA 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
              +T   V V++ GG L I W    + HVFMTG A + +EG+ DI
Sbjct: 222 LSGRTAHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267


>gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
          Length = 273

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ +   +++  DA 
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSIGADGILFV---RESDTDAQ 57

Query: 64  IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA----KENRDGS 115
           I+  IIN DGS    CGNG+RC  +++   S +K      ET  G+  A    +E++   
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIMNKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L    ++  V + GG L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYIGKSTEVILPGGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 284

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           DQI+L+ +      D   RI N DG EV+ CGNG RC VRF+       +     E    
Sbjct: 39  DQILLVENATRPDADFRYRIFNADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHT 98

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPL-ARSFDKMD--RDRFHIGPVNHLFLRNPFV-- 159
           +L  K + DG + VDMG PI + + IP  A     +   ++  ++  +NH    +  V  
Sbjct: 99  VLTLKSHPDGQVEVDMGAPIFEHRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSV 158

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           +SMGNPHA+  V  D+    +   G  + +   F + VN    +V +   + LR +ERG 
Sbjct: 159 LSMGNPHAVQVV-GDVDSAPVLEEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGA 217

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKE 274
           G T ACG+ ACA+VV+       +  V V   GG L+I W   +      V MTG A   
Sbjct: 218 GETLACGTGACAAVVSGIRRGLLDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTV 277

Query: 275 WEGKLDI 281
           +EG+ +I
Sbjct: 278 FEGETEI 284


>gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
          Length = 280

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 150/296 (50%), Gaps = 38/296 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           M++ M +F KM+G GN  + +D   C      D         + HF    D ++LI   +
Sbjct: 1   METDM-EFTKMQGTGNDYVYVD---CFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSR 56

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAK-E 110
            A  D  + + N DGS+   CGNG+RCV ++     L  R KR + T ET+ GI   + E
Sbjct: 57  TA--DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKR-TITVETLAGIKTLELE 113

Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
             DG   S++VDMGE  L  +L P   + D  +  RF +G            +++GNPHA
Sbjct: 114 IEDGKAVSVTVDMGEAALTSRL-PEDITVDGKEY-RF-VG------------INVGNPHA 158

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           I++V D +   DL   G     H  F+ + VN     V   + L++R WERG G T ACG
Sbjct: 159 IYYV-DQVDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACG 217

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           + A ASV+AS  +  T     V + GG L+I +  ++ H+FMTG A + + G +DI
Sbjct: 218 TGATASVMASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDI 273


>gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 307

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 143/285 (50%), Gaps = 15/285 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D      N+T+  + AL+   N HF    DQ++L+       VD  
Sbjct: 5   FTKMHGAGNDFVVLDGYTQPVNLTTAQVRALA---NRHFGVGADQLLLVEKPTVEGVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDMG
Sbjct: 62  YRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRF-HIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ D +L+P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD   + 
Sbjct: 122 TPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEAFP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+  A    
Sbjct: 181 VLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIRR 240

Query: 240 HKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281
              +  V V   GG L I W        + M G A   +EG++++
Sbjct: 241 GLLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIEL 285


>gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
 gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
          Length = 279

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 13/275 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D      ++ S+ I  L+       FDQ++++    +  VD   RI
Sbjct: 10  FTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDFNYRI 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123
            N DG EV+ CGNG RC  RF+  +   ++      T  GI+  + N  G  + VDMG P
Sbjct: 70  FNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGII--QLNLQGDFVQVDMGVP 127

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K IP + + D++    FH   V    L    VV+MGNPHA+  V  ++    +A  
Sbjct: 128 KTSPKEIPFSAATDEI----FHFLKVGDQTLTIS-VVNMGNPHAVLQV-SNVETAPVAQI 181

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G ++  HP F   VN+    V S   + LR +ERG G T ACG+ ACA+ VA       +
Sbjct: 182 GPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAGLLD 241

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
             V V++ GG L I+W      V M G A K +EG
Sbjct: 242 SPVKVELAGGELQIQWAGIATSVIMEGPATKVYEG 276


>gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 295

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 18/270 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG  HD    +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 29  IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVISDGDDAAA 88

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
               R  N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 89  RVAFR--NPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P LDW+ +P++ + D +      + P+       P   SMGNPH  FFV DD+   D+
Sbjct: 147 GAPRLDWQDVPVSEAVDTL------VLPLPGA----PAACSMGNPHCTFFV-DDVAALDI 195

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
             +  V V   GG + ++W     VF++G 
Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGP 285


>gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
 gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
          Length = 289

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 137/290 (47%), Gaps = 23/290 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM+G GN  L ++   C D +  +   I+A  +  +       LI        D  +R
Sbjct: 3   FTKMQGCGNDYLYVN---CMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKADFRMR 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG---SISVD 119
           + N D SE   CGNG RC+ +F+  +   ++   T ET+ GI  +A +  DG   S +VD
Sbjct: 60  MFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATVD 119

Query: 120 MGEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           MG PI D   IP+    +   D+         P   L LR   V SMGNPH + FVED +
Sbjct: 120 MGVPITDPSSIPMTWEKSICLDETITVTVDGAP---LSLRGTGV-SMGNPHFVTFVED-V 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G ++     F E VN+    +     +  R WERG G T ACG+ ACA    
Sbjct: 175 ATAPVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYT 234

Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  L K  R    ++V+ +GG L + +  + H+ M G A   +EG+++I 
Sbjct: 235 AITLGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284


>gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
 gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
          Length = 284

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ID MR    +    AI    +D +       +I   ++ S    +
Sbjct: 5   IEFTKMHGAGNDYIYIDTMRFPIAHPEKLAI--AWSDRHKGIGGDGIILIGKNESGYFTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RI N DGSE + CGNG+RCV ++L        K    +T+ G     +    +N+   ++
Sbjct: 63  RIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVEVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL  K   LA     M      IG  N+   R  FV SMGNPH I F+ + +  
Sbjct: 123 VDMGEPILADKH-QLATPDGSMKDGEVTIGHTNY---RGTFV-SMGNPHFINFI-NGVEE 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+ + G  L +  +F E  N+  A +    S+ +R WERG G+T ACG+ ACA+ VA+ 
Sbjct: 177 YDVQTNGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVAAA 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
              +  R  ++ M GG L I W++N NH++MTG A   + G +++
Sbjct: 237 LTGRAGRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIEL 281


>gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
 gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
          Length = 286

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 143/297 (48%), Gaps = 39/297 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNTHF---DQIMLI 52
           M ++ + F K+EG+ N  LV+D+R     +  + +     +A    D       D ++LI
Sbjct: 5   MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRG-----IL 106
              Q A   A + ++N DGS  + CGNG+RCV   L  R  +R +F  +T  G     + 
Sbjct: 65  GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRPCAVT 124

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
            A  +    + V+MG      + I    + +  D  R  +             V +GNPH
Sbjct: 125 RAPGSASARVRVEMGT-----RRITGEHTLELEDAPRTFV------------AVDVGNPH 167

Query: 167 AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEG-VNLSIARVTSLESLDLRTWERGVGLTAA 224
           AI FV+       LA S G  +  HP+F+    N+  AR  +  S+ L  WERGVG+TAA
Sbjct: 168 AIAFVDASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAA 227

Query: 225 CGSAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA++ A+  +H+      +AV +++ GG L IE  +   + MTG A+  + G
Sbjct: 228 CGTGACATLAAA--IHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRG 282


>gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
 gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
          Length = 274

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 26/288 (9%)

Query: 6   VDFAKMEGIGNKILVI-----DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +DF KM+G GN  +VI     D +G  + +   A N          D I+L+   + +  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEETL---AKNLCHRKFGIGADGILLVR--KSSVA 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRD 113
           D  + IIN DGS    CGNG+RC  R++  +  +K+     ET  GI +A      ++  
Sbjct: 56  DIKMDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEV 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             I+++MG      K IPL+ +   +++D  +I    +        + +G PH I     
Sbjct: 116 LGITINMGNFSFQPKDIPLSINEKIINKD-ININSTEYKITS----MKLGVPHTIVMCNI 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D    D+   G  + KH +FSEG N++   V    ++ ++TWERG G T ACG+ +CASV
Sbjct: 171 D--DVDVTE-GKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASV 227

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           VAS  L        V + GG L IE    + VFMTG A+  +EGK++I
Sbjct: 228 VASNTLGYIGNRCKVIVPGGELFIEVK-GDIVFMTGPAEIVFEGKINI 274


>gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri]
 gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri]
          Length = 327

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 142/307 (46%), Gaps = 47/307 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQ---------IMLIHDFQD 57
           +FAK +G+GN  ++ID R       SDA+   +       D+         I  +     
Sbjct: 36  EFAKYQGLGNDFVLIDNR------ASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPG 89

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDG 114
              D  +R+ N DGSE + CGNG+RC+ RF++       RK +   T+ G++  +   DG
Sbjct: 90  TDEDYSMRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRK-YKVWTLAGLIQPELRADG 148

Query: 115 SISVDMGEPILDWKLIP--LARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFF- 170
            ++VDMG+P+L+   +P  LA + D    R    I     L       VSMGNPH + F 
Sbjct: 149 QVAVDMGKPVLEPANVPTKLAATKDSAAVRCEMDIDGEKWLVT----AVSMGNPHCVTFG 204

Query: 171 ---------------VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
                          VED    + L+++G     H  F    N     V +   + +  W
Sbjct: 205 RAGDGELGADGPGLKVED----FALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVW 260

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274
           ERG G T ACG+ ACA+VVA     + +R   V++ GG L I W + + +V MTG A+  
Sbjct: 261 ERGAGATLACGTGACATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPV 320

Query: 275 WEGKLDI 281
           + G + +
Sbjct: 321 FTGVITV 327


>gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 262

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 17/233 (7%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           D  +R+ N DG+E + CGNG+RC+  F+ +      +++   T+ G++  +   DG ++V
Sbjct: 33  DYAMRMFNSDGTEPEMCGNGIRCLANFVAAIDDADPRAYKVGTLAGLIQPECKPDGQVAV 92

Query: 119 DMGEPILDWKLIP--LARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           DMG P L    +P  LA + D    + +  +     L       VSMGNPH + F  +  
Sbjct: 93  DMGVPTLTPADVPTKLAATEDGAAVKSQMTVDGATWLAT----AVSMGNPHCVTFGREKG 148

Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +   DLA+ G     H  F    N     V   + + +R WERG G T ACG+ 
Sbjct: 149 DEKGLAVDDMDLAAIGPSFESHETFPARTNTEFVEVVRRDYVKMRVWERGAGATLACGTG 208

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ACA+VVA     +T+R  +V++ GG L IEW + ++ V MTG A+  + G++D
Sbjct: 209 ACATVVAGVLEGRTDRKCTVELPGGPLEIEWRESDSRVIMTGPAELVFYGEID 261


>gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268]
 gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268]
          Length = 275

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 140/291 (48%), Gaps = 40/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG+GN  + ++     + + +    A    D  HF    D ++LI     A  DA+
Sbjct: 3   FTKMEGLGNDYVYVN--AFTEKVENPGELARRIADR-HFGVGGDGLILIEPSDKA--DAY 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115
           + + N DGSE   CGNG+RCV +++        +R+    ET  GI    +  K+ +   
Sbjct: 58  MHMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKDGKMEK 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
            +VDMGE  LD +L            +   +  ++  F+     + +GNPHA++F+ED+ 
Sbjct: 118 ATVDMGEVKLDGEL-----------PENIEVRGMSLQFVG----IDVGNPHAVYFLEDNP 162

Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +   DL   G    +HP F + VN    +V S   +  R +ERG G T ACG+ 
Sbjct: 163 ELSVSSVSELDLEKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTG 222

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
           A A+VVA   + +     +V +LGG L I +     H FMTG A++ + G+
Sbjct: 223 ATAAVVAGILMGRLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGE 273


>gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 269

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 18/277 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG  HD    +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 3   IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGNDAA- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 62  -ARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ +PL+ + D +                 P   SMGNPH  FFV DD+   D+
Sbjct: 121 GAPRLGWQDVPLSEAIDTLALP----------LPGAPAACSMGNPHCTFFV-DDVGTIDI 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +  V V   GG ++++W     VF++G     + G
Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSG 266


>gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 246

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 15/254 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCL 239
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V   +  G L
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 240 HKTNRAVSVKMLGG 253
            +    V V++ GG
Sbjct: 235 AEE---VRVELPGG 245


>gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
 gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
          Length = 276

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 22/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +VID      ++T+  +  ++        DQ++L+      ++D   
Sbjct: 3   IAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    +     +T  GI+  +   DG I+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDMGV 122

Query: 123 PILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P      IP     +      ++D  +  IG            VSMGNPH +  V   + 
Sbjct: 123 PRFAPHQIPFKVDQEADYYSLELDGQQVEIG-----------AVSMGNPHCVLRVPA-VD 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+ V  
Sbjct: 171 TAPVAHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIG 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                 +  V+V + GG L I W  D   V+M+G A+  ++G +++
Sbjct: 231 KRRGWLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276


>gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)]
          Length = 281

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 26/292 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I  +  +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLIYFKK-YLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV    FL  ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKM------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           VDMG PI   K IP     +K       ++ ++              VV++GNPH +  V
Sbjct: 122 VDMGTPIFTPKNIPFITKTEKFFYSIIFNKKKYFFS-----------VVTLGNPHCVIQV 170

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            ++L ++ +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA
Sbjct: 171 -NNLKNFPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACA 229

Query: 232 SVVASGCLHK-TNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280
           + VA G  +K  +  V VK+L G L I W+    + ++M+G+A   ++G + 
Sbjct: 230 A-VAIGIRNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280


>gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
 gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
          Length = 284

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +V+D      ++T   +  L+   + HF    DQI+++   +    D
Sbjct: 3   IKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLA---DRHFGIGADQILVVEPAEAGEAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V+F+ ++   ++K    +T++G++  +   DG + V 
Sbjct: 60  FKYRIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVS 119

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177
           MG P  +   +P   +     +   F    V +      F V SMGNPH +  V DD+  
Sbjct: 120 MGTPSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIES 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  +  HP F   VN+   +  +    ++R WERG G T ACG+  CA+   S 
Sbjct: 179 APVKELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
            L   +  +     GG L + W  +   V + G A   ++ ++++ 
Sbjct: 239 ELGVLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284


>gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 286

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 145/280 (51%), Gaps = 26/280 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K  G+GN  +V+D       +T   I  +    + H+    D I++ +D   A  D  
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKIC---DVHYGIGSDGILVKYDSDVA--DFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK---ENRDGS--- 115
           +RI N DGSE +  GNG+R   +FL        + FT ET  GI+ AK   +N+ G    
Sbjct: 62  LRIFNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKI 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG+ I + K IP+    ++   ++  +G  +  F  N   VS+GNPH +  ++++L
Sbjct: 122 ITVDMGKAIFNAKQIPINTDKEEFISEKITVG--DKEFEVN--CVSVGNPHCVI-IKENL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C   VA
Sbjct: 177 DEEEIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCG--VA 234

Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           S  + K   +R + +KM+GG L I   ++ ++ MTGE ++
Sbjct: 235 SVLVKKGLADREIKIKMIGGELKISIDEDWNIKMTGEVQE 274


>gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
 gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
          Length = 289

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/290 (36%), Positives = 148/290 (51%), Gaps = 31/290 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++  G  + + +    A    D  HF    D ++LI        D  
Sbjct: 7   FTKMQGIGNDYVYVN--GFEERVDNPGELAKRISDR-HFGVGSDGLVLI--LPSGVADLR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV------AKENRDGS 115
           +R+ N DGSE + CGN  RCV ++      + +     ET  GI +      A E R   
Sbjct: 62  MRMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVR--G 119

Query: 116 ISVDMGEPILDWKLIP--LARSF-DKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFF 170
            +VDMGEP+L   LIP  LA +  +  D  RF   PV  +  R   V  VSMGNPHA+ F
Sbjct: 120 ATVDMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVE-VGGRTYAVTAVSMGNPHAVVF 178

Query: 171 VE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           ++  DDL   DL   G L   HP+F +  N     V S   + +R WERG G T ACG+ 
Sbjct: 179 MQGIDDL---DLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTG 235

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           ACA+ VAS     T R++ V++ GG L I+W   ++HV+MTG A   ++G
Sbjct: 236 ACAAAVASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDG 285


>gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
 gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
          Length = 276

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I       +  D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAK-MWGDRHTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +L+P    F   ++   +   V+   + +   VSMGNPHA+  V D +    +
Sbjct: 121 GAP----RLVPADIPFQAPEQALSYQVDVDGTPV-DLAAVSMGNPHAVLRVSD-INTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276


>gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836]
          Length = 279

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 150/286 (52%), Gaps = 23/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN    I M G    I   +  A+    N +F    D ++LI   +++  D
Sbjct: 4   LKFTKMHGAGND--YIYMNGFIQEIEDPSALAIRLS-NRNFGIGSDGLVLILPSENS--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
             +++ N DGSE + CGN  RCV +++       +K    ET  G+    L+  + +   
Sbjct: 59  FRMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARK 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMGEPILD   IP+     K+D++     P++    +     VSMGNPHA+ F    
Sbjct: 119 VTVDMGEPILDPVQIPV-----KVDKEPVLNFPLDIDGKIWEISCVSMGNPHAVVFT-TG 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL   G    KHP+F    N     V   ++L++R WERG G T ACG+ ACA+ V
Sbjct: 173 IKELDLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A+      +R +++ ++GG L IEW + NNHV+MTGEA   +EG++
Sbjct: 233 AAILNGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278


>gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
          Length = 241

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 126/239 (52%), Gaps = 9/239 (3%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103
           FDQ++L+    +  VD   RI N DGSEV+ CGNG RC  RF+  +    +K    ET  
Sbjct: 9   FDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKG 68

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           GI+  +   DG ISVDMG P    +L+P    F   ++ + +   V+   +     VSMG
Sbjct: 69  GIIELEIRSDGQISVDMGPP----RLVPEEIPFQAAEQAKSYSLDVDGQTVEL-AAVSMG 123

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+  V DD+ +  + + G  +  +P F   VN+    V   +   LR WERG G T 
Sbjct: 124 NPHAVLRV-DDINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQ 182

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           ACG+ ACA+ VA+      +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 183 ACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 241


>gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
 gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
          Length = 288

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 136/287 (47%), Gaps = 28/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V D  G +  +T          D  HF    DQI+++       VD  
Sbjct: 16  FTKMHGLGNDFVVFD--GVNQTVTLTPERCRRIADR-HFGVGCDQILVVEKPTRPDVDFR 72

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+       + +   ET  G++  +   DG ++VDMG
Sbjct: 73  YRIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDMG 132

Query: 122 EPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            P      +P     +      K+ + R  I            VVSMGNPHA+  V +DL
Sbjct: 133 APRFAPAEVPFVAEAEALTYPLKIGQHRLDIA-----------VVSMGNPHAVLRV-NDL 180

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G ++  H  F + VN    +V +   + LR +ERG G T ACG+ ACA+ V+
Sbjct: 181 DSAPVDILGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVS 240

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                     VSV   GG L+IEW      V MTG A+  +EG+L++
Sbjct: 241 GIRQGALASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287


>gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens]
 gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 276

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 134/282 (47%), Gaps = 12/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++++    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLIVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+M
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP       +       G    L       VSMGNPHA+  V D +    +
Sbjct: 121 GAPRLVPADIPFQAPAQALSYQVDVDGATVELA-----AVSMGNPHAVLRVAD-INSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 269

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 127/278 (45%), Gaps = 20/278 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDN---ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG  HD    +  D +  +        F+Q+ +I D  DA  
Sbjct: 3   IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGDDAV- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 62  -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHYD 179
           G P L W+ +P++ + D +            L L   P   SMGNPH  FFV DDL   D
Sbjct: 121 GAPRLGWQDVPVSEAVDTL-----------ALPLPGAPAACSMGNPHCTFFV-DDLRAID 168

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A+ G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V     
Sbjct: 169 VATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRR 228

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              +  V V   GG + ++W     VF++G     + G
Sbjct: 229 GLLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSG 266


>gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
 gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
          Length = 269

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG 104
           DQ++L+        D   RI N DGSE   CGNG RC  RF+  R      +   E    
Sbjct: 38  DQVLLVEPPGQPEADFRYRIFNADGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSS 97

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           ++  +   +  + VDMG P+     IP  R+    + +    G    +      V+SMGN
Sbjct: 98  LMTLRLRENHEVEVDMGAPLFTPADIPFRRAETAPEYELTAAGETLRVG-----VLSMGN 152

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+  V +D+    L   G  +  H  F E  N     V     + LR +ERGVG T A
Sbjct: 153 PHAVLRV-NDVNDGSLERLGEAIRSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEA 211

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           CGS ACA+VV    +   +  V+V++ GG L I+W  D++ V MTG     +EG + +
Sbjct: 212 CGSGACAAVVYGRRMGWLDDRVTVELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269


>gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 290

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 144/294 (48%), Gaps = 26/294 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-----FDQIMLIHDFQD 57
           + MV F+KM G+GN  +VID     + I  D       +  T       D ++ +   Q 
Sbjct: 2   TRMVMFSKMHGLGNDYVVID-ESTQECIPEDKKPEFVREVCTRGFSVGADGVIFV---QP 57

Query: 58  ASVDAFIR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN-- 111
           A+ D  IR  I N DGSE + CGNG+RC  +F+   + ++++    ET+ GI   +    
Sbjct: 58  AAGDGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIG 117

Query: 112 RDGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
            DGS+    VDMG        IP+     +   DRF   PV    ++    +S+GNPHA+
Sbjct: 118 DDGSVVSSRVDMGTATFKTDQIPMDVGECEF-IDRFL--PVEGEDIKLT-ALSVGNPHAV 173

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            FV DD    DL   G  +  HP+F E +N+    V     + + TWERG G T ACG+ 
Sbjct: 174 IFV-DDTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTG 232

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           A ASV+A   L K + +V V + GG L I+ +        +M G+A   ++G L
Sbjct: 233 ATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286


>gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 281

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 20/289 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I  +  +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLIYSKK-YLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV    FL  ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDD 174
           VDMG PI   K IP      K ++  + I     +F +  +   VV++GNPH +  V ++
Sbjct: 122 VDMGTPIFTPKNIPFI---TKTEKFFYSI-----IFNKKKYFFSVVTLGNPHCVIQV-NN 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L ++ +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA+ V
Sbjct: 173 LKNFPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAA-V 231

Query: 235 ASGCLHK-TNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280
           A G  +K  +  V VK+L G L I W+    + ++M+G+A   ++G + 
Sbjct: 232 AIGIRNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280


>gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
 gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
          Length = 273

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 141/286 (49%), Gaps = 27/286 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ +   +++  DA 
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFV---RESDTDAQ 57

Query: 64  IR--IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS---- 115
           I+  IIN DGS    CGNG+RC  +++   S +K      ET  G+  A  + +G     
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L  T ++  V +  G L IE  +N+ VFM G A   + G++D+
Sbjct: 229 SNLLGYTGKSTEVILPEGKLFIEIKENS-VFMKGPADICFRGEIDV 273


>gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT]
 gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT]
          Length = 274

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 34/292 (11%)

Query: 6   VDFAKMEGIGNKILVI-----DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +DF KM+G GN  +VI     D +G  D++     +          D I+L+   + +  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRF---GIGADGILLVR--KSSVA 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRD 113
           D  + IIN DGS    CGNG+RC  R++  +  +K+     ET  GI +A      E+  
Sbjct: 56  DIKMDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEV 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIF 169
             I+++MG    +   IPL+ +   +++D  +I      +  + L  P  V M N H + 
Sbjct: 116 LGITINMGNFSFEPVDIPLSVNEKIINKD-VNINNKEYKITSMKLGVPHTVVMCNIHDVD 174

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            VE           G  + K+ +FSEG N++   +   +++ ++TWERG G T ACG+ +
Sbjct: 175 VVE-----------GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGS 223

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CASVVAS  L        V + GG L IE  D + VFMTG A+  +EGK+++
Sbjct: 224 CASVVASNTLGYVGNKCKVIVPGGELFIELKD-DVVFMTGPAEIVFEGKINL 274


>gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 276

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 141/288 (48%), Gaps = 30/288 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +V+D  G   ++   A       D  HF    DQI+L+       +D  
Sbjct: 5   FVKMHGLGNDFVVLD--GVRQSVVLTAPQLRHLADR-HFGIGCDQILLVEPASQPGIDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VRF+  +    ++    ET+ G++  +   DG+++VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P+     IP   + + +         V  L + +  +    V MGNPHA+  V D    
Sbjct: 122 VPVFASAQIPFVAATEDL---------VQTLRVADEDIAITAVGMGNPHAVQVVAD---- 168

Query: 178 YDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
            DLA     G L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ V
Sbjct: 169 VDLAPVERQGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAV 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           A       +  V V   GG L I W+ +   V MTG A   ++G++++
Sbjct: 229 AGIARGLLDSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276


>gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 271

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 112/236 (47%), Gaps = 30/236 (12%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC  RF   L +     SF   T  G+++ +   DG + 
Sbjct: 43  DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVK 102

Query: 118 VDMGEPILDWKLIPLARSFDK----------MDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           VDMG+PIL    IP      K          +D   + +             VSMGNPH 
Sbjct: 103 VDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQV-----------TCVSMGNPHC 151

Query: 168 IFFVEDDL--YHYD---LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           + F   +L   H D   L+  G     H MF    N     V S   L +R WERG G T
Sbjct: 152 VTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGAT 211

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
            ACG+ ACA VVA+    +  R   V + GG L IEW  D+NH++MTG A+  + G
Sbjct: 212 LACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 267


>gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf]
 gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf]
          Length = 273

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 137/284 (48%), Gaps = 23/284 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G GN  +V+D R    ++            N HF    D I+ + +  D      
Sbjct: 3   FTKMTGTGNDFIVLDDR--KGSLIGKEKELAQKLCNRHFSVGADGILFVRE-SDTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117
           + IIN DGS    CGNG+RC  +++   S +K      ET  G+  A  + +G     I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V +  G L IE  +N+ +FM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKENS-IFMKGPADICFRGEIDV 273


>gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23]
 gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23]
          Length = 267

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 137/287 (47%), Gaps = 34/287 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G GN  + +D    +  +  + +I           D ++LI        D 
Sbjct: 2   SKIHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116
            +RI N DGSE   CGN  RC+ ++L  R           T+ G+ V   +  DG   S+
Sbjct: 62  TMRIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEIRLLTLSGVKVLSLHVTDGFVESV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVED 173
           +VDMGEP+L+             +  +F       L  RNP     VSMGNPH + F +D
Sbjct: 122 TVDMGEPVLE-------------NESQF-------LPSRNPGHGTFVSMGNPHYVIFTDD 161

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                 +   G  L  HP F +  N+  ARV +   +  R WERG G+T ACG+ ACA+ 
Sbjct: 162 V---DQVGEAGPALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATA 218

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           VA+    K +R   + M GG L IEW + +NHV+MTG A+   +G++
Sbjct: 219 VAAALTGKASRTSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEI 265


>gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
 gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
          Length = 274

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 139/279 (49%), Gaps = 12/279 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID    +  IT+  +  L+ D  T    DQ+++I       +D   R
Sbjct: 3   FTKMHGLGNDFVVIDAVTQNVRITASMVRRLA-DRKTGIGCDQVLVIEPPSAVDIDFNYR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I NCDG+EV+ CGNG RC+ RF+  R    +KS   +T   ++         ++VDMG P
Sbjct: 62  IFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGVP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LD   IP    F   +    +   VN    R    VSMGNPHA+  V D +    +A  
Sbjct: 122 ELDPPAIP----FQATEAASLYDIDVNGQVQRIA-AVSMGNPHAVLTVAD-INTATVAEL 175

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H  F   VN+   ++     + LR +ERGVG T ACGS ACA+ VA+      +
Sbjct: 176 GAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELVD 235

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             V+V +  G L I+W    + + M+G AK  + G++ I
Sbjct: 236 SPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274


>gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
 gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
          Length = 277

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 25/286 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM G+GN  +VID      +++ + +  L+   + H     DQI+LI    +   D  
Sbjct: 5   FTKMHGLGNDFIVIDAVNQQISLSPEQLRRLA---DRHLGVGCDQILLIEK-AEGDADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC VR++       ++    ET+ G+++ +   DG ++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P  D   IP                P   L L +  V    VSMGNPHA+  V  DL +
Sbjct: 121 VPKFDPVEIPFIAE---------QRAPTYSLSLDDRQVEISSVSMGNPHAVQVV-SDLDN 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++ KH  F + VN    +V     + LR +ERG G T ACG+ ACA+ VA  
Sbjct: 171 APVLTEGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGI 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                   V V    G L I W  +N  V+MTG A   ++G+++++
Sbjct: 231 QRGLLESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276


>gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
 gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
          Length = 326

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 149/330 (45%), Gaps = 78/330 (23%)

Query: 8   FAKMEGIGNKILVIDMR--------GCHDNITSDAI-NALSTDD-NTHFDQIM-LIHDFQ 56
           F K  G+GN  LV+D+R        G    + S A+  AL         D IM ++    
Sbjct: 3   FGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPALG 62

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENR 112
           D   DA +R++N DGSE + CGNG+RCVV++L  R      R++   ET  G+L  + +R
Sbjct: 63  DG--DARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAHR 120

Query: 113 ------DGSI------SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-- 158
                 DG I      +VDMG P L+   IP+              GP     +  P   
Sbjct: 121 SDTALGDGGIAAIEQVTVDMGRPRLERAQIPMH-------------GPAEERCISEPLAI 167

Query: 159 --------VVSMGNPHAIFFVEDDLYHYDLASFGNL----LAKHPMFSEGVNLSIARVTS 206
                    VSMGNPHAI FV  D++  +  +   L    L +HP F    N+ +A +  
Sbjct: 168 AGRPLDITAVSMGNPHAIAFV--DVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRR 225

Query: 207 LES---------------LDLRTWERGVGLTAACGSAACASVVASGCL---HKTNRAVSV 248
                             ++L  WERG G+T ACG+ ACA+ VA+ CL    +   A++V
Sbjct: 226 APQSAADDDGDSADSPTVIELVVWERGCGITLACGTGACATAVAA-CLTGRARPGEAITV 284

Query: 249 KMLGGGLLIE-WHDNNHVFMTGEAKKEWEG 277
            +LGG L I    + + V M G A   ++G
Sbjct: 285 HLLGGPLAITVGAELDSVRMRGPATHVFDG 314


>gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
 gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
          Length = 261

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 121/241 (50%), Gaps = 17/241 (7%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFET 101
           FDQ++++    D   D   RI N DGSEV+ CGNG RC  RF+  RMK    + S +  T
Sbjct: 29  FDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV--RMKGLTNKYSVSVST 86

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV 159
            +G +V     D  ++V+MG P  +   IP    F     ++ +I       LF      
Sbjct: 87  KKGKMVLSIEEDDQVTVNMGVPEFEPSKIP----FKAKQTEKTYILRTEDKTLFCG---A 139

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPH +  V DD+   D+ + G LL  H  F E VN    +V +   ++LR +ERG 
Sbjct: 140 VSMGNPHVVT-VVDDVATADVDTLGPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGA 198

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           G T ACGS AC +V         +  V V + GG L I+W      ++MTG A   ++G+
Sbjct: 199 GETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSLNIQWQGVGKPLYMTGPATHVFDGQ 258

Query: 279 L 279
           L
Sbjct: 259 L 259


>gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36]
 gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36]
          Length = 269

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 138/276 (50%), Gaps = 12/276 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFIRIIN 68
           M G+GN  +V+D    +    +D I  L+ D NT   FDQ++++    D  +D   RI N
Sbjct: 1   MHGLGNDFMVVDCVTQNVFFNNDNIRRLA-DRNTGIGFDQLLVVEAPYDPDLDFHYRIYN 59

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DGSEV+ CGNG RC   F+  +    +      T  G +  +   DG ++V+MG P L 
Sbjct: 60  ADGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELA 119

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              IP   +  K ++        + +F      V++GNPH +  V DD+    LA  G+ 
Sbjct: 120 PDKIPFRAT--KQEKTYILRALDSTVFCG---AVAIGNPHCVTIV-DDIETAPLADLGHA 173

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +A H  F   VN    +V S +   LR +ERGVG T ACG+ ACA+ V      K  + V
Sbjct: 174 IAHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDV 233

Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +++ GG L I W      VFMTG A   ++G+++I
Sbjct: 234 CIELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269


>gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVPF--RANKAEKTYIMRAAEQTILCG---VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224


>gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1]
          Length = 292

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 20/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM GIGN  + ++   C +   S+   ++ + +D         L+        D  +R
Sbjct: 3   FTKMHGIGNDYIYVN---CFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKADFRMR 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119
           I N DGSE   CGN  RC+ +++  +    ++  T ET  GI    L A      +++VD
Sbjct: 60  IFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178
           MG+ +L  K IP+       D DRF   PV       +   VSMGNPHA+ FV  D    
Sbjct: 120 MGKAVLVPKDIPV-----NSDLDRFISQPVEADGRTWSVTCVSMGNPHAVIFV-GDTDSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236
           DL   G     H +F + +N    +V    +L +R WERG G T ACG+ ACAS VA+  
Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +   +  + + + GG L I +  +  V M G A+   +G++
Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEV 276


>gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
 gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
          Length = 281

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 141/299 (47%), Gaps = 39/299 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           S+M+ F KM G GN  + ++       +      A       HF    D ++LI    D 
Sbjct: 2   STMIHFTKMHGAGNDYIYVNTL---SEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDT 58

Query: 59  S-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KE 110
           S  D  + I N DGSE   CGN  RC+ ++L  +    +K    ET+ GI +        
Sbjct: 59  SQADFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDAN 118

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL------RNPFVVSMGN 164
           N   S++VDM EP  +     +   F             NH  L      +    VSMGN
Sbjct: 119 NHVASVTVDMLEPQFN-----VPEQFTG-----------NHPSLSAIPGAQEGIFVSMGN 162

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH + FV DD++  DL   G  L     F +  N+  A++T+  +L  R WERG G+T A
Sbjct: 163 PHYVIFV-DDIHAIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMA 221

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           CG+ ACA+  A+    +T R V++ M GG L +EW  DNNH++++G A   +EG + + 
Sbjct: 222 CGTGACATATAAIQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALP 280


>gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 273

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 21/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---DQIMLIHDFQDASVDAFI 64
           F KM+G GN  +VID R  +  +  +   A    D       D I+L+ +   A +   I
Sbjct: 3   FTKMQGTGNDFIVIDDRK-NSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQIKMII 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRD-GSISV 118
             +N DGS    CGNG+RC  +++     +K +S T ET  G+   ++  EN     +++
Sbjct: 62  --MNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVTI 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P  + + IP AR  +++   R  +    +    N   + MG PH I F    L  Y
Sbjct: 120 NMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLEDY 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +CASV+A+  
Sbjct: 173 NVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAANK 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L  T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 232 LSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273


>gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
 gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
          Length = 273

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 23/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G GN  +V+D R     +            N HF    D I+ + +  + +  
Sbjct: 1   MEFTKMTGNGNDFIVLDDR--KGELIGKEKELAQKLCNRHFSIGADGILFVRE-SNTNAQ 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGS 115
             + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   
Sbjct: 58  IQMVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKY 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+++MGEPI + + I    S +K       I   N  +    F   MG PH I F   +L
Sbjct: 118 ITINMGEPIFEGEKI----SNEKEKIINKSIRENNKEYSITAF--HMGVPHTIIF--GNL 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+   G  +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A
Sbjct: 170 DEYDIEE-GKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIA 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  L  T ++  V + GG L IE  +   +FM G A   + G++D+
Sbjct: 229 ANLLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273


>gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
 gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
          Length = 307

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 142/313 (45%), Gaps = 47/313 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHF----DQIMLIHDFQDASVDA 62
           F KM G GN  + +D  G  + I     + ++    + HF    D ++ I+   D S+D 
Sbjct: 3   FTKMHGCGNDYVYVD--GSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-------------LTSRMKRKSFTFETIRGILVAK 109
            + + N DGS  + CGNG+RCV ++             + S  K+K    E      +  
Sbjct: 61  EMEMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVIVSAGKKKYINLE------IGT 114

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFD-KMDRD------RFHIGPVNHLFLRNPFV--- 159
           +N   S+ VDMG PIL    +P+A   D   DR       R  +  +  + +  P +   
Sbjct: 115 DNLVFSVKVDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDG 174

Query: 160 -------VSMGNPHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL 210
                  VSMGNPHA+ F+ +D  L  +++   G     + +F    N    +V    ++
Sbjct: 175 KEWKITCVSMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNV 234

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMT 268
            +R WERG G T ACG+  CA+ VA      T+  V+V +LGG +   W  N  + V M 
Sbjct: 235 HMRVWERGTGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIME 294

Query: 269 GEAKKEWEGKLDI 281
           G A   + G++D+
Sbjct: 295 GPATTVFTGEIDL 307


>gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 261

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 129/256 (50%), Gaps = 10/256 (3%)

Query: 30  ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
           +TS  I  LS       FDQ++L+        D   RI N +G+EV+ CGNG RC   FL
Sbjct: 12  LTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQCGNGARCFGLFL 71

Query: 89  TSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
             +                L  +   +  I V+M EP  D+K   L+   + +D + F I
Sbjct: 72  LLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEP--DFKFYNLSSLQNVLDNN-FSI 128

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
             +N   + N  +VS+GNPH I  V+  + +  +   GN + K+P+F EGVN+S   + +
Sbjct: 129 KLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNIIGNNIEKNPIFPEGVNVSFMEILN 185

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHV 265
            + + LR +ER VG T ACGSAACA+V         +  V V++LGG L+I W      +
Sbjct: 186 KKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKLIIIWKGFGTPL 245

Query: 266 FMTGEAKKEWEGKLDI 281
           +M G AK  ++G + I
Sbjct: 246 YMVGPAKHVYDGYIYI 261


>gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
 gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
          Length = 275

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 134/279 (48%), Gaps = 9/279 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID+     N+    I  ++        DQ++L+        D   RI N 
Sbjct: 1   MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGNG RC  RF+  +    ++    ET  G +     +DG I+ ++G PI D 
Sbjct: 61  DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP  +  D  D   + +    +        +SMGNPHA+  V D +    +++ G L+
Sbjct: 121 TQIPF-QPEDSEDNAEYGLTVAGNTHRIG--ALSMGNPHAVLTV-DSVADAPVSTLGPLI 176

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP F E VN+    + S   + LR +ERGVG T ACGS ACA+ V        + AV+
Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236

Query: 248 VKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIKTG 284
           V + GG L + W   DN+ V++ G     +EG + ++ G
Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275


>gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
 gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
          Length = 280

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 143/286 (50%), Gaps = 33/286 (11%)

Query: 8   FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+G+GN  + ++  G   DN+   A+           D ++ I   + A  D  +RI
Sbjct: 3   FTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGMRI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR-MKRKS--FTFETIRGI----LVAKENRDGSISVD 119
            N DGSE   CGNG+RC+ +++  + + RK+   T ET  G+    L  ++    S+ VD
Sbjct: 61  FNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVLVD 120

Query: 120 MGEPILDW--KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    KL+   R++  +                    VS+GNPHA+ F    +  
Sbjct: 121 MGRPELSPPVKLMAAGRTWQAVP-------------------VSVGNPHAVVFC-GGVDA 160

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +LA  G  L +HP F + VN+  A+      L +R WERG G T ACG+ ACA++ A+ 
Sbjct: 161 LNLAELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAA 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
                +R  +V + GG L + W  +N H++MTG A   +EG++ ++
Sbjct: 221 RAGLVSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLE 266


>gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 279

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 128/292 (43%), Gaps = 31/292 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60
           + F KM+G  N  + +D   C  +   + I ALS      HF    D I+ I   Q A  
Sbjct: 3   LSFTKMQGCANDYIYLD---CRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +RI N DGSE + CGNG+RCV  +L T  + +++   +T+ G+        G   V+
Sbjct: 60  DGMMRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVE 119

Query: 120 MGE--------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           MG         P ++    PL      +D   +H+             +S+GNPH +  V
Sbjct: 120 MGAYSAMPASLPAVNMGEEPLVDKELTVDGKTWHV-----------TCISVGNPHCVTVV 168

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           ED +    L   G     H  F E +N    +V     L +R WERG G T ACG+  CA
Sbjct: 169 ED-VDSLKLEEIGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCA 227

Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +V A   L        + V++ GG L I       + MTG A+   EG  ++
Sbjct: 228 TVAALTELGICPAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279


>gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153]
          Length = 217

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 110/216 (50%), Gaps = 22/216 (10%)

Query: 76  SCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
            CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P      IP  
Sbjct: 9   QCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFMPSEIPFV 68

Query: 134 RSFDKMDRDRFH-------IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
               + D    +       I PV+         V+MGNPHA+  V DD+    +   G+L
Sbjct: 69  PESGEGDDACIYGVHLESGIQPVS--------CVNMGNPHAVIVV-DDVECAPVRETGSL 119

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS---GCLHKTN 243
           +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA    G L +  
Sbjct: 120 IEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDE-G 178

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 179 KTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214


>gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661]
 gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 295

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 124/250 (49%), Gaps = 22/250 (8%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGI 105
           D ++ I        D   RI N DGSE + CGNG+RC  +++  R MK+     ET  G+
Sbjct: 46  DGVIFIQKPTSDEYDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGL 105

Query: 106 LVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--- 158
            V++   +G     I V MG P    K IP+     K D D F  G    L L+NP+   
Sbjct: 106 RVSEMEIEGDEVKKIKVYMGVPKFKLKDIPMVVDGYKED-DEFLNG---ELKLKNPYLPK 161

Query: 159 ----VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
               VV++GNPHA+ FVED     D     L   G  +  H  F E +N+   +V +   
Sbjct: 162 VKLSVVNVGNPHAVIFVEDNNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNE 221

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           + + TWERG G T ACG+   ASV+ +  L KTN  V   + GG L IE  D+  V+M G
Sbjct: 222 IRIVTWERGAGYTTACGTGTTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIG 280

Query: 270 EAKKEWEGKL 279
           +A   ++ KL
Sbjct: 281 DAVMVYDAKL 290


>gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286]
          Length = 280

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 147/284 (51%), Gaps = 23/284 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN    I M G    I + +  A+    N HF    D ++LI        D  
Sbjct: 6   FTKMQGAGND--YIYMNGFTQQIDNPSELAVRLS-NRHFGIGSDGLVLI--LPSDICDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG---SIS 117
           +++ N DGSE + CGN  RCV +++       +K  T ET  G+  +  ++ D     ++
Sbjct: 61  MQMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEPIL   LIP+  + + +      I G +  +       VSMGNPHA+ F++  + 
Sbjct: 121 VDMGEPILAPTLIPVRVAEEPVLEYPLDIDGKIWKIS-----CVSMGNPHAVVFMKG-IK 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G     +P+F    N     V    +L++R WERG G T ACG+ ACA+ VA+
Sbjct: 175 DLDLPVLGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              +  +R +++ +LGG L IEW   NNHV+MTGEA   +EG+L
Sbjct: 235 VLNNHCDRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278


>gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 285

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 142/292 (48%), Gaps = 22/292 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
            ++ F K +G+GN  ++ID R     +NI ++  + +    N  +    D I+L+ +  +
Sbjct: 2   QIIKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQN-SE 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114
              +  ++I N DGS  + CGNG+RC++++L +  +     +F  ET+ G L        
Sbjct: 61  RGANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGD 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFF 170
            I V+MG P  + K IP   S + ++       P   + ++N     + + MGNPH +  
Sbjct: 121 HIRVNMGSPSFEPKAIPTTLSPNNLNI------PEGTVTIKNENITMYGIGMGNPHMVII 174

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           ++  +    L   G        F    N+    V ++  + ++ WERG G T ACG+ AC
Sbjct: 175 LKS-IEDLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGAC 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           A +  +  L  TN    V + GG L I+W + ++ ++MTG A+  + G+L I
Sbjct: 234 ACLAVTSLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285


>gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
 gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
          Length = 286

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+KM GIGN   +ID         +D   A     + HF    D ++ +     A  D  
Sbjct: 8   FSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117
            R+ N DGSE + CGNG+RC   F+  +  +K++  T ET   I+ I +  EN +  +  
Sbjct: 66  YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG        IP+A      D D F   P+  L    N   +S+GNPHAI FV D++ 
Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++ 
Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
             L   +  V + + GG L    ++       FM G A+  ++G++
Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEI 285


>gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 269

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 135/285 (47%), Gaps = 34/285 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C +    D  +      + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYVN---CFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQ 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DG+    CGNG+RCV ++      + +   + ET  GI    +  +  +  +++
Sbjct: 58  MDMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDD 174
           VDMG+P+   +L            +   I   ++ F+     +SMGNPHA+ F    E+ 
Sbjct: 118 VDMGKPVQTSELF-----------EELEIKGKSYRFIG----ISMGNPHAVVFEDEFEEP 162

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL   G     H  F +  N    RV     + +R WERG G T ACG+ ACA  V
Sbjct: 163 IETLDLEKIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAV 222

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
           A+     T+  V V++LGG L I W  + + V+MTG A + + G+
Sbjct: 223 AAILAGCTDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGE 267


>gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
          Length = 286

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+KM GIGN   +ID         +D   A     + HF    D ++ +     A  D  
Sbjct: 8   FSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117
            R+ N DGSE + CGNG+RC   F+  +  +K++  T ET   I+ I +  EN +  +  
Sbjct: 66  YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG        IP+A      D D F   P+  L    N   +S+GNPHAI FV D++ 
Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++ 
Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239

Query: 237 GCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKL 279
             L   +  V + + GG L   + E  +    FM G A+  ++G++
Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEI 285


>gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
 gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
          Length = 275

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 139/284 (48%), Gaps = 20/284 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F KM+G+GN  +VID    H  +  D   AL    + H+    DQI+L+       V
Sbjct: 1   MLRFTKMQGLGNDFVVID--AIHQTVNLDE-AALRRLADRHYGIGCDQILLVEPPASDEV 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DG EV  CGNG RC  RF+  +  + R     ET  G +V      G + V
Sbjct: 58  DFRYRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRV 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYH 177
           +MG P      +PL       DR+R  +  VN   +   F  VS+GNPHA+  V  D+  
Sbjct: 118 EMGVPRHAPAEVPLL-----ADRER-SVYTVNVEGVDWQFGAVSVGNPHAVITVA-DVDE 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A  G +L +H +F E  N+   +V  L    LR +ERG G T ACGS ACA+ V  G
Sbjct: 171 APVARVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVV-G 229

Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            L  T    V + + GG L I W      V+++G A   +EG++
Sbjct: 230 ILQGTLESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273


>gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 240

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 7/239 (2%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103
           FDQ++++        D   RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  
Sbjct: 3   FDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKA 62

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           GI+  +  ++G + V+MG P    K +P    F   + +  +   + +    +  VV+MG
Sbjct: 63  GIVKPELGQNGWVRVNMGYP----KFLPNEIPFVADEPEALYTLELANDQNISIDVVNMG 118

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+  V D L   D+A  G  +  H  F E VN    +V   + + LR +ERGVG T 
Sbjct: 119 NPHAVTIVPDVLTA-DVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETL 177

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           ACG+ ACA+ V+         +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 178 ACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236


>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
 gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
          Length = 1351

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 150/296 (50%), Gaps = 28/296 (9%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQ 56
            + + + F KM G GN  +  +   C D +  +    AL+  D  HF    D ++L+   +
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFN---CFDRMIDNPEGFALNLSDR-HFGVGGDGVILV--CR 1121

Query: 57   DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD- 113
                D  +R+ N DGSE + CGNG+RCV +F+     + R   T ET+ GI+  K +R  
Sbjct: 1122 SKVADGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHY 1181

Query: 114  GSI---SVDMGEPILDWKLIPLARSFDKMDR--DR-FHIGPVNHLFLRNPFVVSMGNPHA 167
            G +   +VDMG  IL+ + IP     D+  R  DR   I    H        VSMGNPH 
Sbjct: 1182 GEVNGATVDMGAAILEPERIPCTLPADENGRVVDREVEIAGEKHRVT----CVSMGNPHC 1237

Query: 168  IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
            I F+ +++   ++   G      P+F E VN    +V    +L +R WERG G T ACG+
Sbjct: 1238 IVFM-NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGT 1296

Query: 228  AACASVVASGC--LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ACA+VVA+        N  V+V + GG L I + ++  V+MTGEA   +EG + +
Sbjct: 1297 GACAAVVAAVLNGYCPMNEEVTVMLRGGNLTIRYTEDT-VYMTGEAVTVFEGDIRV 1351


>gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
 gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
          Length = 283

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 38/293 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+  GN  + ID    H  + +    A    D  HF    D ++LI        D  
Sbjct: 3   FTKMQAFGNDYVYID--AIHQELKNLPELARFVSDR-HFAIGSDGMVLICPSDKG--DFR 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKS-FTFETIRGI----LVAKENRDGSIS 117
           +R+ N DG+E + CGN +R V +++   R+  K+    ET+ G+    L   +    +I 
Sbjct: 58  MRMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIR 117

Query: 118 VDMGEPILDWKLIPLARSFDK--------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            D+GEP L  K+IP+    D         +DR  FHI             VS GNPH   
Sbjct: 118 ADIGEPRLSTKVIPINTEMDTFVDQPVQVLDR-TFHIT-----------AVSWGNPHCAM 165

Query: 170 FVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           FV D +   D+  +G  +     +F    N++     S + L +R WERG G T  CG+ 
Sbjct: 166 FV-DSVAELDVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTG 224

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
              +VV +    K +R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 225 CATAVVTAILTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
          Length = 285

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 139/285 (48%), Gaps = 11/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +VID      N+T      L+        DQI+++     A +D   
Sbjct: 3   IKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  VRF+T +    +      T+ G++V +   DGSI+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDMGA 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           P+     +P      D +      + P+   +   + +  V+SMGNPHA+  V D +   
Sbjct: 123 PVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMS--VLSMGNPHAVQIV-DAVETA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LA  G  +  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+ VA   
Sbjct: 180 GLALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
             + +  V V+  GG L I W    +HV ++G A   +EG++ + 
Sbjct: 240 RGQLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284


>gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 186

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 11/196 (5%)

Query: 87  FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
            L   + + +    T RG+L    + D ++SVDMG+P+L+W+ IPL     +MD     I
Sbjct: 1   MLMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLT---GEMDTTALPI 57

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                    NP   SMGNPH  FFVED L   D+A+ G ++  +P+F    N+   +V  
Sbjct: 58  S-------GNPTACSMGNPHCTFFVED-LASVDVAAIGPMIEANPLFRNRTNVHFVQVID 109

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
              + LR WERG G+    GS  C +VV        +  V V+  GG + ++W     VF
Sbjct: 110 RGRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVF 169

Query: 267 MTGEAKKEWEGKLDIK 282
           +TG  K  + GK+ I+
Sbjct: 170 LTGSVKTVFSGKIAIQ 185


>gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
 gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
          Length = 278

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 13/276 (4%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D +    +    +A            DQ++ +    +   DA +RI
Sbjct: 5   FIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMRI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DGS  + CGN MRCV  +L   R    +   ET+ GI+  +     +I+VDMG P  
Sbjct: 64  YNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQW 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + IPL +  + +D     +G  ++        +SMGNPH +  V D    ++LA  G 
Sbjct: 124 AGRAIPLDQDGEMIDAP-LEVGGQSYRMT----ALSMGNPHGVVRVAD-AEGFELAKVGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TN 243
           L+  H +F   +N  + +V S   + +R WERG G+T ACG+ ACA+ VA  C+ +    
Sbjct: 178 LVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVA--CMRQGWVE 235

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           R  +V + GG L I W +++ V M+G A + + G+L
Sbjct: 236 RDCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271


>gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
 gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
          Length = 290

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 136/284 (47%), Gaps = 22/284 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M G GN  +V+D       +T +   AL+   + HF    DQI+L+        D   RI
Sbjct: 1   MHGAGNDFVVLDGVRQSIELTPERARALA---DRHFGIGADQILLVDAPLHPEADFRYRI 57

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV+ CGNG RC VRF+  +   +R     E   GI+      DG++SV+MG+  
Sbjct: 58  FNADGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQ-- 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYH 177
              +  P A  FD  D             L  P        +V++ NPHA+  V DD+  
Sbjct: 116 --TRFEPQALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLV-DDVQT 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ VA  
Sbjct: 173 APVGTIGPLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGI 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W DN+ + M+G A   + G++DI
Sbjct: 233 RRGLLDSPVLVHTRGGPLTITWSDNS-LRMSGPAVTVFAGQVDI 275


>gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
 gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
          Length = 292

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 38/296 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM+G GN  +VID       + +  I A+      HF    D ++L+   +  S D
Sbjct: 1   MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMC---RPHFGIGADGLILVEPSE--SCD 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG---ILVAKENRD-G 114
             +   N DGS  + CGNG+RC+ ++          K F  ET  G   + V +  R   
Sbjct: 56  VRMNYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVS 115

Query: 115 SISVDMGE--------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           +I V MG         P++  K   L       DR+  +               SMGNPH
Sbjct: 116 TIRVSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTY------------GCASMGNPH 163

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
               VE+ +  + +   G    KHPMF    N+S A V S +S+ + TWERGVG T ACG
Sbjct: 164 MAVLVEN-VDSFPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACG 222

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  CA+V     +      V   + GG L+IE  D + VFMTG AK  + G  +++
Sbjct: 223 TGTCATVAVLHRMGLVGNKVHACLSGGDLVIEL-DGSAVFMTGPAKVVFRGTYEMQ 277


>gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
 gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
          Length = 277

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F K+ GIGN  + ID R  +DNI ++     A  A     +   D ++++ +   A V+ 
Sbjct: 3   FWKLHGIGNDFVAIDGR--YDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVADVE- 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116
            +   N DGS    CGNG+RC V+F+     +++  F   T+ GI   K N +DG   SI
Sbjct: 60  -MVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVED 173
            V+MG+     K +P++   +K    +  +       L   + V+   MG PH + FV D
Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITV-------LDREYTVTSILMGVPHTVIFV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +L   ++  +G  + KH +F +  N++  ++   +++ ++T+ERG G T  CG+   A V
Sbjct: 171 ELSMEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACV 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + S  L K  ++V+V   GG + I+  +N   +MTG A K  EG L++
Sbjct: 231 MVSNYLGKVGKSVNVISEGGSVRIDL-ENGFAYMTGPAVKICEGNLEV 277


>gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061]
 gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC
           35061]
          Length = 286

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 22/286 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+KM GIGN   +I+         +D   A     + HF    D ++ +     A  D  
Sbjct: 8   FSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--DIG 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI-S 117
            R+ N DGSE + CGNG+RC   F+  +  +K++  T ET   I+ I +  EN +  +  
Sbjct: 66  YRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVLFK 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG        IP+A      D D F   P+  L    N   +S+GNPHAI FV D++ 
Sbjct: 126 VDMGTSTFKTPEIPMAS-----DMDEFLDSPLEVLDTTFNTTAISVGNPHAIIFV-DNID 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++ 
Sbjct: 180 EIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAISG 239

Query: 237 GCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKL 279
             L   +  V + + GG L   + E  +    FM G A+  ++G++
Sbjct: 240 FKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEI 285


>gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4]
 gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4]
          Length = 279

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 13/278 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G+GN  +V+  R    +    A            D ++ I   ++A  D  +RI 
Sbjct: 3   FVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSEEA--DITMRIF 60

Query: 68  NCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDMG 121
           N DGSE + CGN +RCV +  + T  +  +     T  GI    L  K+ +  S +VDMG
Sbjct: 61  NADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EPIL+   IP+     K+  +       + L LR    +S GNPH + FV   +    + 
Sbjct: 121 EPILERSAIPMQGPPGKVVNEPLIFE--DGLVLRV-TALSFGNPHCVLFV-PAVEEAPVE 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HP F    N+    V     + +R WERGVG T ACGS ACA+ VAS     
Sbjct: 177 ELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILNGY 236

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
           T R + V + GG L I W  ++ HV++ G A   ++G+
Sbjct: 237 TAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGE 274


>gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
 gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
          Length = 295

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+          +  N         F    D ++ I        D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +++  R MK+     ET  G+ V++   +G     I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169
            V MG P    K IP+     K D D F  G    L L+NP+       VV++GNPHA+ 
Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKED-DEFLNG---ELKLKNPYLPKVKLSVVNVGNPHAVI 176

Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           FVED     D     L   G  +  H  F E +N+   +V +   + + TWERG G T A
Sbjct: 177 FVEDNGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   ASV+ +  L KT+  V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 237 CGTGTTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290


>gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
 gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
          Length = 295

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI   D     +N   +    +     +   D ++ I      + D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK-ENRDGS---I 116
              RI N DGSE + CGNG+RC  +++  R MK+     ET  G+ +++ E  +G    I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169
            V MG P    K IP+     K + + F  G +N   L NP        VV++GNPHA+ 
Sbjct: 121 KVYMGVPKFKLKDIPMILE-GKDNEEEFLNGELN---LNNPILPKVRLSVVNVGNPHAVI 176

Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           FVED     D    +L   G  +  H  F E +N+   +V +   + + TWERG G T A
Sbjct: 177 FVEDNNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTA 236

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   ASVV +  L KT+  V   + GG L IE  D+  V+M G+A   ++GKL
Sbjct: 237 CGTGTTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290


>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1351

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 32/298 (10%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQ 56
            + + + F KM G GN  +  +   C D +  +    AL+  D  HF    D ++L+   +
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFN---CFDRMIDNPEGFALNLSDR-HFGIGGDGVILV--CR 1121

Query: 57   DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD- 113
                D  +R+ N DGSE + CGNG+RCV +F+     + R   T ET+ GI+  K +R  
Sbjct: 1122 SKVADGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHY 1181

Query: 114  GSI---SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
            G +   +VDMG  ILD   IP     D+    ++R+   I    H    N   VSMGNPH
Sbjct: 1182 GEVNGATVDMGAAILDPVKIPCTLPADENGMVVNRE-VDIAGEKH----NVTCVSMGNPH 1236

Query: 167  AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
             I F+ +++   ++   G      P+F E VN    +V    +L +R WERG G T ACG
Sbjct: 1237 CIVFM-NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACG 1295

Query: 227  SAACASVVA---SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + ACA+VVA   +G   K +  V+V + GG L I + D   V+MTGEA   +EG + +
Sbjct: 1296 TGACAAVVAAVLNGYCPK-DEEVTVMLRGGNLTIRYTDET-VYMTGEAVTVFEGDIRV 1351


>gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
 gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
          Length = 267

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 39/288 (13%)

Query: 8   FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60
           F KM+G GN  + +D   C  + I + +  A+   D  HF    D ++LI   D  D  +
Sbjct: 3   FVKMQGAGNDYVYVD---CFKEKIKNPSEIAIKVSDR-HFGVGSDGLILICPSDIADVKM 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS-- 115
           D +    N DGS    CGNG RCV ++      +K ++FT ET  GI   K E +DG   
Sbjct: 59  DMY----NADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGIKYIKVEPKDGKAE 114

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
            I+V+MG+ ++  +             ++  I      F+     V +GNPHA+++++  
Sbjct: 115 YINVNMGKAVITSEF-----------PEKILINGEEKEFIG----VDIGNPHAVYYIDSL 159

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           + L + DL   G    KH  FS+ VN     +   +++ +R WERG G T ACG+ ACAS
Sbjct: 160 EKLQNMDLNRVGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACAS 219

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             A+      + +V V +LGG L I   +N+ ++M G+A+  + G+++
Sbjct: 220 AFATMKKGACDTSVRVHLLGGDLDISL-ENDEIYMRGKAEYVFTGEIN 266


>gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4]
          Length = 264

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 36/285 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C +    D         + HF    D ++LI   + A  D  
Sbjct: 3   FTKMQGIGNDYVYVN---CFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQ 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS    CGNG+RCV ++      + +     ET  GI    +  K+ + G ++
Sbjct: 58  MDMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVT 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175
           VDMG P                      IG P+        F  VSMGNPHA+ F+ D +
Sbjct: 118 VDMGRP-----------------EQTSEIGEPITVAGKEYRFTGVSMGNPHAVVFM-DGI 159

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              ++   G     H  F +  N     +     +++R WERG G T ACG+ ACA+ VA
Sbjct: 160 KDMEIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVA 219

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                 T+  V V +LGG LLI W  + + VFMTG A + + G++
Sbjct: 220 CILNGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264


>gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 284

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 28/229 (12%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRD 113
            VD  +RI N DGSE   CGN  RCV +++ +R        K F   T  G++      D
Sbjct: 76  GVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFNLHTKSGLVRPALLDD 135

Query: 114 GSISVDMGEPILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G + VDMG P          R+F    K+  D +               VSMGNPHA+ F
Sbjct: 136 GRVCVDMGLP----------RTFLGSIKLTADCYDF---------TAETVSMGNPHAVIF 176

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD+    L ++G++L     F +  N+  A+V +   + +R WERG G+T ACG+ +C
Sbjct: 177 V-DDIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERGCGVTMACGTGSC 235

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A++VA+    +      V + GG L I+  ++  V MTG A++ ++G +
Sbjct: 236 ATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGTI 284


>gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 136/292 (46%), Gaps = 20/292 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G GN  + +D   C   +  +  AI+   +          LI   +    D  
Sbjct: 3   IEFTKMHGAGNDYVYVD---CTKEMLPNPGAISEYVSHRRFGIGSDGLICVCKSDVADFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N D SE + CGNG+RCV +F+  +    + + T ET+ G+    +V +        
Sbjct: 60  MRMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAK 119

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDR----DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           VDMG+P+     IP+    +  +D+    +  H          N   +SMGNPH + FV 
Sbjct: 120 VDMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFV- 178

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+   +L   G     H +F EGVN    +V    ++  R WERG G T ACG+ A A 
Sbjct: 179 DDVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAV 238

Query: 233 VVASGCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            VA   L+K  +    ++V   GG L +    N+HV + G A   ++G +DI
Sbjct: 239 TVACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDI 290


>gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13]
 gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13]
          Length = 272

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 136/282 (48%), Gaps = 18/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-DAF 63
           + F KM+ IGN  +VI+      +++   I  L+       FDQ+++I    + +  D  
Sbjct: 3   IPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFDYK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC   ++       +   T ET+ G +   ++ D  I+VDMG
Sbjct: 63  YRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTKD-DELIAVDMG 121

Query: 122 EPILDWKLIPLARSFDKM-DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              +  K  P +  FD   D+    I  +          + +GNPH +FFV D +   D 
Sbjct: 122 TYSIGMKNEP-SLFFDIFSDKKTEEIQGI---------YIDVGNPHIVFFV-DSVKDVDA 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +    +F   VN+    + +   + L  +ERG GLT  CGS ACA+ +A+  L 
Sbjct: 171 VRTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHLK 230

Query: 241 KTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           K   + V V M GG +  +   +NH+ + G+A   +EG +++
Sbjct: 231 KVEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272


>gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
 gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
          Length = 269

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 12/276 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +  ++ D I  L+       FDQ++++    D   D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF  L     +      T  G LV   + +  ++V+MG P  + 
Sbjct: 61  DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFE- 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              P +  F     ++ ++ P +    L     VSMGNPH +  VED +    + S G L
Sbjct: 120 ---PASLPFRANKVEKTYLLPTDVQTVLAG--AVSMGNPHCVIRVED-IDSAPVESVGPL 173

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L +H  F +GVN+   +V +   + LR +ERG G T ACG+ ACA+ V           V
Sbjct: 174 LERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRV 233

Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            V + GG L I W  +   V+MTG A   ++G++++
Sbjct: 234 RVDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269


>gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
 gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 131/283 (46%), Gaps = 20/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV------ 60
             KM G GN  +VID       ++      L+        DQI+++       V      
Sbjct: 5   LTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAAAGPE 64

Query: 61  --DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
             D   RIIN DG EV+ CGNG RC VRF+  +    R      T  GI+  +   DG +
Sbjct: 65  GLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLPDGGV 124

Query: 117 SVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNPHAIF 169
            V+MGEP  D   +P + R      + +  + P+        +F R   +VSMGNPHA+ 
Sbjct: 125 EVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNPHAVQ 184

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            VED +    + + G L+  HP F   VN    +V S   + LR +ERG G T ACG+ A
Sbjct: 185 VVED-VKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLACGTGA 243

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA 271
           CA+ VA       +  V V+ LGG L I W    + VF+ G A
Sbjct: 244 CAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPA 286


>gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
 gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
          Length = 297

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 139/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+     +   +  +  A        +   D ++ +        D
Sbjct: 3   MEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDEYD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +++  R MK+     ET  G+ V++   +G     I
Sbjct: 63  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVKKI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169
            V MG P    K IP+       D D F  G    L L+NP+       VV++GNPHA+ 
Sbjct: 123 KVYMGVPKFKLKDIPMVVDGYSED-DEFLNG---ELELKNPYLPKVKLSVVNVGNPHAVI 178

Query: 170 FVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           FVED     D     L   G  +  H  F E +N+   +V +   + + TWERG G T A
Sbjct: 179 FVEDNGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTA 238

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   ASV+ +  L KT   V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 239 CGTGTTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292


>gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
 gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
          Length = 274

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 26/279 (9%)

Query: 6   VDFAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           ++F KM+G+GN  I++ID         ++    +    N  F    D +++I     A  
Sbjct: 1   MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKIC---NRRFGIGADGLVIIRKSNIA-- 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRD 113
           DA + IIN DGS    CGN +RC  ++L     +++   + ET  GI      +  +N+ 
Sbjct: 56  DAKMVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKV 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S+ V+MG+   D K IPL    + +  +   I    +        + MG PH I    +
Sbjct: 116 ESVKVNMGKGSFDGKDIPLNNK-NSLINEVIKIKEKEYKLT----ALLMGVPHTILINNN 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D   YD+   G  + K+ +F EG N++  +V  + +++++TWERG G T ACG+  CASV
Sbjct: 171 D--EYDVIE-GKDIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASV 227

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           VA   L   +  V+V+ LGG L +E   NN V+M G A+
Sbjct: 228 VALKKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAE 265


>gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6]
          Length = 279

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 132/300 (44%), Gaps = 47/300 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60
           + F KM+G  N  + +D   C ++   + I ALS D    HF    D I+ I     A  
Sbjct: 3   LSFTKMQGCANDYIYLD---CRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGI-LVAKENRD----- 113
           D  +RI N DGSE Q CGNG+RCV  +L T    +++   +T  G   + ++ R      
Sbjct: 60  DGRMRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVE 119

Query: 114 -GSIS--------VDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            G  S        V+MGE P++D  L    R++                       +S+G
Sbjct: 120 MGGYSAMAAALPAVNMGEGPLVDCPLTVEGRTWRVA-------------------CISVG 160

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPH +  V DD+    L   G    KHP F E +N    +V     L +R WERG G T 
Sbjct: 161 NPHCVTVV-DDVDSLKLEDIGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETW 219

Query: 224 ACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           ACG+  CA+V A   L        V V++ GG L+I       + MTG A    EG  ++
Sbjct: 220 ACGTGTCATVAALTELGVCPAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279


>gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 279

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 137/287 (47%), Gaps = 27/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM GIGN  +  +   C +    +         + HF    D I+LI   + A  DA 
Sbjct: 3   FWKMHGIGNDYIYFN---CFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +RCV ++L      ++ +   ET+ GI    L  +      + 
Sbjct: 58  MRMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVE 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG PIL+   IP+    D +      I  V +    N   VSMGNPH +    DD+  
Sbjct: 118 VDMGAPILEPAKIPVDLEGDVIINHELXIEEVAY----NITCVSMGNPHCVV-FVDDVDD 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G L   + +F + VN    +  +  +  +R WERG G T ACG+ ACA  VA  
Sbjct: 173 IELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACA--VAVA 230

Query: 238 CL----HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           C+     K N  +++ + GG L I + D   +FMTG A K + G ++
Sbjct: 231 CVLNGYAKKNEDITIILKGGELKIRYTDET-IFMTGTATKAFSGDVE 276


>gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 138/294 (46%), Gaps = 28/294 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M G GN  + +D   C      +A        + HF    D ++LI     A  D F+ +
Sbjct: 1   MHGAGNDYVYVD---CTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEM 55

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG------SISV 118
            N DGS  Q CGNG+RCV +++       +K    +T+ GI   + N D       S+ V
Sbjct: 56  YNSDGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRV 115

Query: 119 DMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL---RNPFV--VSMGNPHAIFF 170
           +MG PIL    IP+    +  + + +D      V+       R+  V  VSMGNPH + F
Sbjct: 116 NMGSPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVF 175

Query: 171 VEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           ++DD    ++ +   G L   H +F E  N    +V    +L +R WERG G T ACG+ 
Sbjct: 176 MDDDFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTG 235

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            CAS+VA+           + +LGG L I W+   N V+M G A   ++G +DI
Sbjct: 236 CCASLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDI 289


>gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
 gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
          Length = 268

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 140/279 (50%), Gaps = 19/279 (6%)

Query: 11  MEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M+G GN  +VID R G  +   S+ A            D I+LI   + +  D  + IIN
Sbjct: 1   MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122
            DGS    CGNG+RC  R++     + + +   ET  GI +A     +N    I+++MGE
Sbjct: 59  ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L+ + IP A   +K+   + +I    ++       + +G PH +   + D    D+  
Sbjct: 119 FSLNPEDIP-ANCKEKIMNKKIYINDKEYIINS----MKLGVPHTVVMCKTD--DIDIEE 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + K+ +F+EG N++   +   +++ ++TWERG G T ACG+ +CAS   S  L   
Sbjct: 172 -GKYIEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYV 230

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                V + GG L+ E+ D N VFMTG A+  ++G+ ++
Sbjct: 231 GNKAKVFVPGGELITEFKD-NKVFMTGPAEIVFKGEFNL 268


>gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
 gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
          Length = 293

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 116/254 (45%), Gaps = 39/254 (15%)

Query: 61  DAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRD 113
           D  + I N DGS+ ++  CGNG+RC+ RF+     R     +S+   T  G ++     D
Sbjct: 42  DYTMHIYNPDGSQPEANMCGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKED 101

Query: 114 GSISVDMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G + VDMG PIL+   IP  L   FD  + +    +     L       VSMGNPH + F
Sbjct: 102 GQVLVDMGIPILNGNRIPTLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTF 157

Query: 171 VED------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG---- 220
            E+      DL    L   G L   H  F +  N     V SL  L +R WERG G    
Sbjct: 158 GEEHEEHLFDLSTLPLEKIGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLE 217

Query: 221 --------------LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHV 265
                         +T ACG+ ACA+ VA+    +  +   V + GG L +EW   ++HV
Sbjct: 218 IEALSKELVFFFAGITLACGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHV 277

Query: 266 FMTGEAKKEWEGKL 279
           +M+G A+  + G L
Sbjct: 278 YMSGPAEHVFTGTL 291


>gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
 gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
          Length = 293

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 116/254 (45%), Gaps = 39/254 (15%)

Query: 61  DAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRD 113
           D  + I N DGS+ ++  CGNG+RC+ RF+     R     +S+   T  G ++     D
Sbjct: 42  DYTMHIYNPDGSQPEANMCGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKED 101

Query: 114 GSISVDMGEPILDWKLIP--LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G + VDMG PIL+   IP  L   FD  + +    +     L       VSMGNPH + F
Sbjct: 102 GQVLVDMGIPILNGNRIPTLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTF 157

Query: 171 VED------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG---- 220
            E+      DL    L   G L   H  F +  N     V SL  L +R WERG G    
Sbjct: 158 GEEHEEHLFDLSTLPLEKIGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLE 217

Query: 221 --------------LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHV 265
                         +T ACG+ ACA+ VA+    +  +   V + GG L +EW   ++HV
Sbjct: 218 IEALSKELVFFFAGITLACGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHV 277

Query: 266 FMTGEAKKEWEGKL 279
           +M+G A+  + G L
Sbjct: 278 YMSGPAEHVFTGTL 291


>gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
 gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
          Length = 283

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 23/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF----DQIMLIHDFQDASV 60
           + F KM G GN  ++I      D       N L+ +  + HF    D +M++ +   +  
Sbjct: 3   IKFKKMHGTGNDFIMIYYE---DYPFEQHFNQLAKEVCHRHFGIGADGLMIVKE--SSVA 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D  ++  N DGSE   CGNG+RC  +F+     +K++ FT ET+ G+    +   E +  
Sbjct: 58  DVQMKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVS 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
           S+ V+MG+ +LD K IP+     +   ++  I    +        V +G PH I F+E  
Sbjct: 118 SVRVNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI----STVLLGVPHTIIFMETL 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL    +   G ++  H +F E  N++ A++ +  ++ +RTWERG G T ACG+   +  
Sbjct: 174 DLDR--VKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVC 231

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +  L      V V++ GG L IE      ++M G AK   +G
Sbjct: 232 GIANHLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKG 275


>gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
 gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
          Length = 268

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 28/284 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM+G GN  + ++    +     +A+    +  +T      L+      + D  +R
Sbjct: 3   IEFTKMQGAGNDYIYVNTLK-YPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETGDFSMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSISV 118
           I N DGSE   CGN  RCV +++       +K    ET+ GI      +  EN D S++V
Sbjct: 62  IFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVD-SVTV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P  D + + L   +                  R    V+MGNPH + F  D +   
Sbjct: 121 DMGAP-CDIRTVDLGNGY----------------LFREGTAVNMGNPHLVIFTHD-VSAI 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL S G  +  HP+F   VN+  A+V    ++ +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 163 DLLSEGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAAAF 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +      + M GG L IE+   N+ + MTG A K ++G +++
Sbjct: 223 TGRGKGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTINM 266


>gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 135/288 (46%), Gaps = 35/288 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + +D   C      +         + HF    D ++LI        D  
Sbjct: 5   FTKMQGIGNDYVYVD---CFKEQVKEPGKVSRFISDRHFGIGADGLILI--CPSGKADCR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115
           + + N DGS+   CGNG+RCV ++          R++ T ET+ GI    L  K+ +  S
Sbjct: 60  MEMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVS 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMGE  L   L P     D  D  RF +G            + +GNPHA++++ D +
Sbjct: 120 ITVDMGEGTLTSDL-PEDIQVDGKDY-RF-VG------------IDVGNPHAVYYM-DGI 163

Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              DL   G     H  F+ + VN     V   + L++R WERG G T ACG+ A ASV+
Sbjct: 164 DRLDLEKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVL 223

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           AS  +   +    V + GG L+I        +FMTG A + + G +DI
Sbjct: 224 ASILMGYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDI 271


>gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 216

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 102/216 (47%), Gaps = 9/216 (4%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 3   RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 62

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P     +K ++          +      VVSMGNPH +  V D++    + +
Sbjct: 63  PNFEPAQVPF--RANKAEKTYIMRAAEQTILC---GVVSMGNPHCVIQV-DNVDTAAVET 116

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 117 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 176

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
              V V++ GG L I W    H ++MTG A   ++G
Sbjct: 177 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDG 212


>gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
 gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
          Length = 273

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 19/282 (6%)

Query: 8   FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           F KM+G GN  +VID R G  +   S+    +         D I+L+   + +  D  + 
Sbjct: 3   FTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIKME 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDGSISVD 119
           IIN DGS    CGNG+RC  R++  +  + +     ET  GI +A     +N    I+++
Sbjct: 61  IINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGITIN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGE  L+ + IP A   +K+   + +I   N  ++ N   + +G PH +   +  +   D
Sbjct: 121 MGEFSLNPEDIP-ANCKEKIMNKKIYIN--NKEYIINS--MKLGVPHTVVMCK--INDID 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K+ +F EG N++   V   +++ ++TWERG G T ACG+ +CAS   S  L
Sbjct: 174 IQE-GKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISNIL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 V V + GG L+ E  D N VFMTG A+  + G++++
Sbjct: 233 GYVGDKVKVLVPGGELITELKD-NKVFMTGPAEIVFTGEINL 273


>gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105]
 gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105]
          Length = 291

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 144/294 (48%), Gaps = 25/294 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDA 58
           S+++ F KM G GN  +V+D      +++   I  L+   + HF    DQ++++   + A
Sbjct: 4   SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLA---DRHFGVGADQVLVVESSELA 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
             D   RI N DG EVQ CGNG RC  +++  +    +   T ET+ GI+  +  +   +
Sbjct: 61  --DFKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWV 118

Query: 117 SVDMGEPILDWKLIPL------ARSFDKMDRDRFHI--GP-VNHLFLRNPFVVSMGNPHA 167
            V+MG   L+ + +P       +R    + + R  +  GP +  L++    V SMGNPH 
Sbjct: 119 KVNMGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVG---VASMGNPHV 175

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  ++    +  +   G  L  HP F E VN+    +     + LR +ERGVG T ACG+
Sbjct: 176 VILLDQPASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGT 235

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279
            ACA+ V    +      V V   GG L IEW    ++ V MTG A+  +EG+ 
Sbjct: 236 GACAAAVVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEF 289


>gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
 gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
          Length = 277

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 31/290 (10%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+ GIGN  + ID R         +S A+   +   +   D ++++ +   A ++  +
Sbjct: 3   FWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVADIE--M 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117
              N DGS    CGNG+RC  RF+     +  + F  +T+ GI     N        +I 
Sbjct: 61  VYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVINIK 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVEDD 174
           VDMGE       IP+A   +K   ++ HI       L   F ++   MG PH I FV++ 
Sbjct: 121 VDMGEGSFKTSDIPMATDKEKFIEEKVHI-------LDRDFTMTSMLMGVPHTIVFVDE- 172

Query: 175 LYHYDLA---SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +DL     +G  +    +F E  N++  +V    ++++ TWERG G T  CG+   A
Sbjct: 173 ---FDLEMIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTA 229

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + V    L KT ++++V   GG + I+  D   VFMTG A K  EG L++
Sbjct: 230 AAVVCNYLEKTEKSMNVTSKGGTVKIDIGD--KVFMTGPAVKICEGYLEV 277


>gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 268

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           ++F KM G GN  + ++    +  +  +      +  +T    D ++LI   +    D  
Sbjct: 3   IEFTKMHGAGNDYIYVNTL-KYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DFS 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSI 116
           +RI N DGSE   CGN  RCV ++L       +K    ET+ GI      +  EN D S+
Sbjct: 60  MRIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVD-SV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P                 RD   +   N    R    V+MGNPH + F  D + 
Sbjct: 119 TVDMGAP-----------------RDIRTVDLGNGYLFREGTTVNMGNPHLVIFTHD-VS 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL S G  +  HP+F   VN+  A++    ++ +R WERG G+T ACG+ ACA+ VA+
Sbjct: 161 AIDLLSEGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAA 220

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +      + M GG L IE+   N+ + MTG A K ++G +++
Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTINM 266


>gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
 gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
          Length = 283

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 30/290 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +     S   + HF    D ++++   +  + 
Sbjct: 1   MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIIL---KYVAS 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114
             F+   N DGS+   CGNG+RC   +L +   ++   F  +T+ G L  K N D     
Sbjct: 58  MPFMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117

Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIF 169
            S  V+MG+P+ + K + +    ++  R++ +I      ++++F        MG  H++ 
Sbjct: 118 FSARVNMGKPVFNVKEL-INTEKEQFLREKINIDGKEIEISYIF--------MGTDHSVI 168

Query: 170 FVEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           FV +D   Y++  FG  +  +  +F + VN++  +V + E +++ TWERG G T ACG+ 
Sbjct: 169 FV-NDFNDYNIDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTG 227

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           A AS V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 228 ATASAVLAKTFGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 225

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 15/222 (6%)

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---LVAKENRD-GSISVD 119
           I+N DGS    CGNG+RC  +++     +K +S T ET  G+   ++  EN     ++++
Sbjct: 13  IMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVTIN 72

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  + + IP AR  +++   R  +    +    N   + MG PH I F    L  Y+
Sbjct: 73  MGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLEDYN 125

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +CASV+A+  L
Sbjct: 126 VEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAANKL 184

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 185 SLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225


>gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
 gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
          Length = 326

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 26/245 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQDA 58
           VD  K+ G  N+  ++D       +T D + +L+   TD N       D ++LI      
Sbjct: 3   VDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTNHK 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             D  +R+IN DGSE   CGNG+R V R+L+ + K+  F  ET+   L  K+      + 
Sbjct: 63  ETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKK------AE 116

Query: 119 DMGEPILDWK--LIPLARSFDKM----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           ++G+ I  ++  + P++ + + +    + ++F    ++ L     F  V++ NPH I FV
Sbjct: 117 ELGKDIQTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRFSAVAVPNPHLISFV 176

Query: 172 E-DDLYHY---DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + + LY     DLA++ N   K+P F +GVN+S   V   +SL +RT+ERGVG T ACG+
Sbjct: 177 DHETLYSSQFEDLATYLN--GKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGT 234

Query: 228 AACAS 232
           A  AS
Sbjct: 235 AMAAS 239


>gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3]
          Length = 279

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 126/290 (43%), Gaps = 27/290 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASV 60
           + F KM+G  N  + +D   C  +   + I ALS      HF    D I+ I     A  
Sbjct: 3   LSFTKMQGCANDYIYLD---CRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           DA +RI N DGSE + CGNG+RCV  +L T  M +     +T+ G+       +G   V+
Sbjct: 60  DAMMRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVE 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVED 173
           MG          +A +   ++      GP+  L L           +S+GNPH +  V  
Sbjct: 120 MG------AYTAMAAALPAVNMGE---GPLVDLPLEVEENLWRVTCISVGNPHCVTIV-P 169

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           ++    L   G     H  F E +N    +V     L +R WERG G T ACG+  CA+V
Sbjct: 170 EVDSLKLEQIGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATV 229

Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A   L        V V++ GG L I       + MTG A+   EG  ++
Sbjct: 230 AALTELGICPAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279


>gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
 gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580]
 gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
          Length = 285

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 19/286 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCH--DNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++    H  + + SD A+   S       D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPVK--M 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118
           RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+    E +  S +V
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSATV 123

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L    +P+      +   ++   G            VSMGNPH +F++ DD+  
Sbjct: 124 DMGEPRLLKSDMPMRGEQGSETINEKMIFGGRE----MKGTAVSMGNPHIVFYL-DDIEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
             L + G L+ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+ V+S 
Sbjct: 179 APLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSSV 238

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                K +  ++V + GG L+I W ++  V MTG A+   EG+  I
Sbjct: 239 LNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFI 284


>gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
 gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
          Length = 280

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 39/293 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---------- 55
           ++F KM G GN  +V+D    H+ +  +       +    F + +    F          
Sbjct: 5   LEFTKMHGNGNDFVVVDE--FHEEVVPE-------EHKPQFVRAVCKPRFGVGADGAIFV 55

Query: 56  QDASV-DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN-R 112
           Q +SV DA  R  N DGSE   CGNG+RC  R++       + F  ET+ GI   + + +
Sbjct: 56  QPSSVADAKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVK 115

Query: 113 DGS--ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLR--NPFVVSMGNPHA 167
           DG   + VDMG+P+ +   IP A  +FD +  D F       LF R  + + V+ G PHA
Sbjct: 116 DGEYWVRVDMGKPVFEPAKIPAAGGTFDGVWHDTF------ELFGRKVDVYAVNTGVPHA 169

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACG 226
           + FV  D   +D+      +  +  F EG N++ AR+ S   +++RT+ERGV   T +CG
Sbjct: 170 VVFV--DSLDFDILE-ARKIRYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCG 226

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + + A V  +  L        VK  GG L IE  D    FMTG+A + ++G L
Sbjct: 227 TGSVAVVAVASKLGLIEPEAIVKTKGGVLRIEVRDT--AFMTGKATRVFDGVL 277


>gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1222

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 132/296 (44%), Gaps = 44/296 (14%)

Query: 1    MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59
            M ++ + FAKM G+GN  +V+D           ++  L +         +L+ +   AS 
Sbjct: 948  MAATTIRFAKMHGLGNDFVVVDS-------VRQSLPPLGS-------SWLLVIEPPPASG 993

Query: 60   ----VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENR 112
                +D   RI N DGSEV  CGNG RC+  ++      ++       T    L      
Sbjct: 994  PELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTP 1053

Query: 113  DGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV-----VSMGN 164
            DG+I+V+MG P  D   +PL   AR+             V HL L +        VSMGN
Sbjct: 1054 DGAITVNMGCPKFDPAQVPLLAPARA------------DVYHLALESGATICCGAVSMGN 1101

Query: 165  PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
            PH +  V DD+    +   G  L  H    E  N+   ++    S+ LR +ERG G T A
Sbjct: 1102 PHLVTLV-DDVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRA 1160

Query: 225  CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            CGS ACA+V       +    V+V + GG L I W   +  ++MTG A   +EG L
Sbjct: 1161 CGSGACAAVAVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEGLL 1216


>gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07]
 gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07]
          Length = 285

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 28/291 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDAS 59
           ++ F K+ GIGN  + ID R   D I      AL+        +   D ++++ D + A 
Sbjct: 9   LMKFWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVAD 66

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD- 113
           V+      N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K    NR+ 
Sbjct: 67  VEMVYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREI 124

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFF 170
            SI V+MG+     K +P+  + ++  ++   +       L + F V+   MG PH +  
Sbjct: 125 NSIRVNMGKGSFIAKDVPVLTNKERFVQESIKV-------LDSEFKVTSMLMGVPHTVVI 177

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D+L   D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   
Sbjct: 178 V-DELDVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMT 236

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS +    L+    +V+V   GG + I+  D    +MTG A K  EG L++
Sbjct: 237 ASAIVCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 285


>gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
 gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
          Length = 278

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 25/276 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62
           F KM G GN  +V++     + +  D ++AL+ D          DQ +++   + A  + 
Sbjct: 6   FTKMHGCGNDFIVVNT--FRETVPED-LSALAQDMCQRRFAVGADQFIILGSAESADANF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
            + I+N DGS+V+ CGN +RC   +      ++      ET+ GI  A    DG++ + +
Sbjct: 63  RMDILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAV 122

Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             P   I+D  L      F        +  P+          VS+GNPHA+ +V D++  
Sbjct: 123 AVPSTTIVDVGLDSEHPLFGTPLSAEQYTFPMT--------AVSVGNPHAVTYV-DEIDL 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G L   H +F    N+   +V     +++R WERG G T ACGS ACA  VAS 
Sbjct: 174 LNLEKIGPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVAS- 232

Query: 238 CLHKTNRA-VSVKMLGGGLLIEWHDNNH-VFMTGEA 271
            LH   ++ + V + GG L IEW      V+M+G A
Sbjct: 233 VLHGVAKSPMKVSLKGGDLEIEWEGRGKPVYMSGSA 268


>gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63]
          Length = 276

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 142/288 (49%), Gaps = 28/288 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62
           F K+ GIGN  + ID R   D I      AL+        +   D ++++ D + A V+ 
Sbjct: 3   FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVE- 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K    NR+  SI
Sbjct: 60  -MVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNPHAIFFVED 173
            V+MG+     K +P+  + ++  ++   +       L + F V+   MG PH +  V D
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKV-------LDSEFKVTSMLMGVPHTVVIV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +L   D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS 
Sbjct: 171 ELDVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASA 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +    L+    +V+V   GG + I+  D    +MTG A K  EG L++
Sbjct: 231 IVCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 276


>gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
 gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
          Length = 289

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 34/295 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63
           F KMEG+GN  + ++   C +    D         + H     D ++LI     A  D  
Sbjct: 3   FTKMEGLGNDYVYVN---CFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFS 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++      + +  + ET+ GI     ++ + R   ++
Sbjct: 58  MAVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVT 117

Query: 118 VDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG P +    + +  +  +KM  +R  +      F+R    VSMGNPHA+ +++    
Sbjct: 118 VDMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIR----VSMGNPHAVVWLDG--- 170

Query: 177 HYDLA---------SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
             D+A         S G L+ KH  F  G N+   RV   + + +R WERG G T ACG+
Sbjct: 171 -LDVACVTDGEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGT 229

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
            ACA+  A    + TN  V+V++ GG L IE+  N     MTG A+K ++G++DI
Sbjct: 230 GACAAAAACMAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDI 284


>gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10]
          Length = 340

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 27/282 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 7   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVNDPVR 66

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 67  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 126

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     A  FD +  DR   G    L+    F  +++ NPH I FV
Sbjct: 127 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLISFV 182

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 183 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 242

Query: 230 CASVVASGCLHKTNRA-----VSVKMLGGGL--LIEWHDNNH 264
            A+ +A  CL K   A     ++V   GG +  ++ + +NN+
Sbjct: 243 SATSLAF-CLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNY 283


>gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 273

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 25/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G GN  + I+   C      D  N      N HF    D ++++   +++S  
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS-- 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
           A + IIN DGS    CGN +RC  +++     + +  F  ET  GI    L+ K+     
Sbjct: 56  AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEY 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG+P  +   IPL  + D++      IG   +    N   + MG PH I F +   
Sbjct: 116 VKVYMGKPSFNGSDIPL-NNLDELIDQEIAIGKEKY----NMTSLLMGVPHTIIFEKHKE 170

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           Y       G  + K  +F +G N+   +V     + + TWERG G T ACG+  CASVV 
Sbjct: 171 YE---VQEGENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVV 227

Query: 236 SGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           +  L + +   + VK  GG L++E  ++  V+M+G A+
Sbjct: 228 AKKLGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAE 264


>gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 336

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 134/268 (50%), Gaps = 23/268 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  NK  ++D       +T   + AL+   T+  T      D ++++++   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENR--DG 114
             V A +R+IN DGSE   CGNG+R V R++  +  + SF  ET++  L VAK +   DG
Sbjct: 61  PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIETMKADLKVAKHDEFADG 120

Query: 115 --SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
             + + ++   + D   +P    FD +  +R     V  L  +  F  +++ NPH I F+
Sbjct: 121 VPAYAAEISPVLFDKHDLP----FDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E  +    L   G  L  K+P +S+GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            A+ +A    H      ++ ++V   GG
Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGG 264


>gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
 gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
          Length = 279

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 125/286 (43%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM+G  N  + +D R     + +D           HF    D I+ I        D
Sbjct: 3   LSFTKMQGCANDYIYLDCRA--SGVPADIAALAQRLSARHFSVGADGIICICAPVTPGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSI--SV 118
             +RI N DGSE Q CGNG+RCV  +L T  +++     +T  G  V +  R G+    V
Sbjct: 61  GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSG--VKRITRQGAQLWQV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +MG     +  +P       M  D     P+     +     +S+GNPH +  VED +  
Sbjct: 119 EMG----TYSTLPADLPAIHMGEDPLVDQPLTVEGKVWKVTCISVGNPHCVTVVED-VDS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A  
Sbjct: 174 LKLEAIGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALT 233

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L      + + V++ GG L+I       + MTG A   +EG  ++
Sbjct: 234 ELGICPAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279


>gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 328

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 23/281 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  + +   F  ET+   L  ++  D +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETMYADLAVRQADDFAEG 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+
Sbjct: 121 V----PAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
            AS +A    H       + +SV   GG +    H  +H +
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277


>gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
 gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
          Length = 271

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 31/290 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           V F KM+G GN  + ++    +     + ++   +  +T    D ++LI   ++   D  
Sbjct: 3   VKFTKMQGAGNDYIYVNTF-LYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DFS 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGSI 116
           +RI N DGSE   CGN  RC+ +++      ++     ET  GI      V  E    S+
Sbjct: 60  MRIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVESV 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P     + P+    D  +   +  G            VSMGNPH + FV D + 
Sbjct: 120 TVDMGIPT---GITPV----DLGEGYGYSQG----------IAVSMGNPHLVIFV-DQVS 161

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L+  G LL  HP+F + VN+  A+V     + +R WERG G+T ACG+ ACA+ VA+
Sbjct: 162 DVRLSEVGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVAA 221

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
               +  R   V M GG L ++W++ + H+ M G A K ++G+++ +  K
Sbjct: 222 AFTGRCGRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIEYEPSK 271


>gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 136/278 (48%), Gaps = 25/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G GN  + I+   C      D  N      + HF    D ++++   + +S  
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS-- 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
           A + IIN DGS    CGN +RC  +++     + +  F+ ET  GI    L+ K+     
Sbjct: 56  AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEY 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG+P  +   IPL  + D++      IG   +    N   + MG PH I F  ++ 
Sbjct: 116 VKVYMGKPSFNGSDIPL-NNLDELIDQEVAIGKEKY----NMTSLLMGVPHTIIF--ENH 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y++   G  + K  +F +G N+   +V +   + + TWERG G T ACG+  CASVV 
Sbjct: 169 KEYEVQE-GENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVV 227

Query: 236 SGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           +  L + +   + VK  GG L++E  ++  V+M+G A+
Sbjct: 228 AKKLGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAE 264


>gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
 gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
          Length = 270

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 142/273 (52%), Gaps = 12/273 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIIN 68
           KM+G+GN  L+ID R    +++ + I  LS  +    FDQ++ + +   A  DA I+  N
Sbjct: 7   KMDGLGNDFLIIDNRNQKISLSPEQILKLSNRERGIGFDQLIYMENSTQA--DAEIKYFN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG    +CGNG RC+   L     + + TF+    + +  +N D  I+V M +P +   
Sbjct: 65  SDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIMPKPKIKLS 124

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IP+    + +  + F I  +N   L+   ++++GNPH +FF  + +   +L   G ++ 
Sbjct: 125 EIPVT---NDVQNNPFLI-EINSKKLKG-HLINVGNPHIVFF--EKISDEELKKIGPIIE 177

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
               F + +N++ A + + +++D+  WERG G T ACG+AACA+   +  L  T   V++
Sbjct: 178 NLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLKLTKNPVNI 237

Query: 249 KMLGGGLLIEWHDNNHVFMTGEA--KKEWEGKL 279
               G LLI+ + +  + MTG    KKE E  L
Sbjct: 238 HFQKGHLLIKINSDKTMMMTGPVSEKKEIEVNL 270


>gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
 gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
          Length = 285

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K  G+GN  ++ D +    N   D         +  F    D I+++    +    
Sbjct: 4   LKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEV--- 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSI- 116
            F+   N DGS+   CGNG+RC   +L   S +    FT +TI G  IL    +  G+  
Sbjct: 61  PFMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTFF 120

Query: 117 -SVDMGEPILDWKLIPLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             V+MG+P+ +       +     D+D F      ++   +   F+  MG  H++ F  D
Sbjct: 121 ARVNMGKPVFN------VKELINTDKDNFINEKITIDGEEIEISFIF-MGTDHSMIF-SD 172

Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DL   D+   G  +     +F + VN +   +    ++ + TWERG GLT ACG+ A AS
Sbjct: 173 DLSKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATAS 232

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
            V +  L KT+  V+V++ GG L+IE+ ++    FMTG ++K  EG
Sbjct: 233 AVLTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEG 278


>gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris]
          Length = 284

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 136/285 (47%), Gaps = 15/285 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           + +  + F KM G GN  +V+D+R  +     DA  A    D  HF    DQI+ I   +
Sbjct: 5   VHTGRLRFTKMHGAGNDFVVLDLR--NGTPPPDASLAARLADR-HFGVGCDQILTIETPR 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DG 114
            A   A  RI N DGS  Q CGNG RCV  +L      +   F         +  R   G
Sbjct: 62  SAEAVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAG 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + SV MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   
Sbjct: 122 TYSVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL ++  F E VN+  A+V     + LR +ERGVG T ACGS ACA+ V
Sbjct: 177 VDAAPVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAV 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                 +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 237 VLMHRGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGE 281


>gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
          Length = 273

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM G GN  + I+   C      D  N      + HF    D ++++   +++S  
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCE---IKDECNLAKKVCDRHFGIGADGLVIVRKSENSS-- 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
           A + IIN DGS    CGN +RC  +++     + +  F  ET  GI    L+ ++++   
Sbjct: 56  AKMVIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEY 115

Query: 116 ISVDMGEPIL---DWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           I V MG+P     D  L  L    DK   +D++++++  +            MG PH I 
Sbjct: 116 IKVYMGKPSFNGRDISLNNLEELIDKEVVIDKEKYNMTSL-----------LMGVPHTII 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           F  D  Y       G  + K  +F EG N+   +V     + + TWERG G T ACG+  
Sbjct: 165 FERDKEYE---VQEGEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGC 221

Query: 230 CASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           CASVV +  L   N   + VK  GG L+IE  ++  V+M+G A+
Sbjct: 222 CASVVVAKKLGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAE 264


>gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
 gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
          Length = 283

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 146/291 (50%), Gaps = 32/291 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F K +G GN  +++  R   +    +     S   + HF    D ++++   +  + 
Sbjct: 1   MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIIL---KYVAS 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114
             F+   N DGS+   CGNG+RC   +L +   ++   F  +T+ G L+ + N D     
Sbjct: 58  MPFMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117

Query: 115 -SISVDMGEPILDWK-LIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAI 168
            S  V+MG+P+ + K LI   +  ++  R++ ++      ++++F        MG  H++
Sbjct: 118 FSARVNMGKPVFNVKDLINTEK--EQFLREKINVDGTEIEISYIF--------MGTDHSV 167

Query: 169 FFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
            FV +D   Y++  FG  +  +  +F + VN++  +V   + +++ TWERG G T ACG+
Sbjct: 168 IFV-NDFNDYNIDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGT 226

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
              AS V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 227 GVTASAVLAKTFGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26]
 gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932]
 gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55]
 gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34]
 gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79]
 gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291]
 gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58]
 gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291]
          Length = 276

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 26/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62
           F K+ GIGN  + ID R   D I      AL+        +   D ++++ D + A V+ 
Sbjct: 3   FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVEM 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116
                N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K    NR+  SI
Sbjct: 61  VYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDD 174
            V+MG+     K +P+       +++RF +     +  R   V SM  G PH +  V D+
Sbjct: 119 RVNMGKGSFIAKDVPVL-----TNKERF-VQESIKVLDRELKVTSMLMGVPHTVVIV-DE 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L   D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +
Sbjct: 172 LDVDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAI 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               L+    +V+V   GG + I+  D    +MTG A K  EG L++
Sbjct: 232 VCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGVLEV 276


>gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630]
 gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42]
 gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255]
 gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile]
          Length = 276

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 26/287 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62
           F K+ GIGN  + ID R   D I      AL+        +   D ++++ D + A V+ 
Sbjct: 3   FWKLHGIGNDFIAIDGR--FDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVADVEM 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRD-GSI 116
                N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K    NR+  SI
Sbjct: 61  VYY--NSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM--GNPHAIFFVEDD 174
            V+MG+     K +P+       +++RF +     +  R   V SM  G PH +  V D+
Sbjct: 119 RVNMGKGSFIAKDVPVL-----TNKERF-VQESIKVLDRELKVTSMLMGVPHTVVIV-DE 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L   D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +
Sbjct: 172 LDVDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAI 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               L+    +V+V   GG + I+  D    +MTG A K  EG L++
Sbjct: 232 VCNLLNMVESSVNVTSQGGTVKIDVGD--FSYMTGPAVKICEGILEV 276


>gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum]
          Length = 290

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 27/284 (9%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64
           DF K  G+GN  +V  M      +T + I  L  D N     D I+L+     AS    +
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIR-LVCDRNFGVGSDGILLL---TRASEPFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL------TSRMKRKSFTFETIRGILVAK-----ENRD 113
           RI N DGSE +  GNG+R   +FL      T+R+    F  +T+ G++ A+      NR 
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRL----FRIQTLGGMVTAEVYPDASNRV 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + VDMG+  +D   + LA     +  +   + P   L L+    +S+GNPH +FF E+
Sbjct: 116 DRVKVDMGKATVDPVSVGLANREKPLVEELLELAP--DLRLKG-TAISVGNPHFVFFREE 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L    +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+ 
Sbjct: 173 -LDEKFMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAA 231

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             S  L K    V V+M GG L IE      + M G   +   G
Sbjct: 232 TVSVMLGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSG 275


>gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
 gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
          Length = 283

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 124/284 (43%), Gaps = 16/284 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  +V+D      N T   I AL+        DQ++L+   +        RI N 
Sbjct: 1   MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            G EV+ CGNG RC+ RF             FET++G +  +   DG + VDMG P L  
Sbjct: 61  TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120

Query: 128 KLIPLARSFD-KMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIFFVEDDLYHYD 179
             +P A   D +M +   H   V  +F   P         V MGNPHA  FV D +  + 
Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFC-PPLSCDIEFTAVGMGNPHATIFV-DGVDSFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +      L    +F E VN+         +  +R +ERG G T ACG+   A+ +ASGCL
Sbjct: 179 VEPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAA-MASGCL 237

Query: 240 HK-TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  V     GG +   W      +++ G A+  + G + +
Sbjct: 238 RGFFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISL 281


>gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
 gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
          Length = 331

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 35/254 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           V   K  G GN  L+ID       +T D     A++    D     D ++ + + Q A  
Sbjct: 3   VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFVSESQQA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +R+ N DGSE   CGNG+RCV R+++ +  +     ET++  L A++          
Sbjct: 61  DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARK---------- 110

Query: 121 GEPILDWKLIPLAR------SFD------KMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167
            EP+LD   IP  R      SFD       +D++     PV  L     F  V++ NPH 
Sbjct: 111 AEPLLDG--IPTFRVEISPVSFDLNKLPMHIDKEVLINEPVKALSEDLSFTAVAVPNPHL 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           I FVE++ +  D     +     P  +F +GVN+S A+      L +RT+ERGVG T AC
Sbjct: 169 IAFVENEGFRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNAC 228

Query: 226 GSAACASVVASGCL 239
           G+A  AS + + CL
Sbjct: 229 GTAMSASSLVA-CL 241


>gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 328

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+
Sbjct: 121 V----PAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
            AS +A    H       + +SV   GG +    H  +H +
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277


>gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 276

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 135/291 (46%), Gaps = 40/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  + +D   C                + HF    D ++LI   +    DA+
Sbjct: 3   FTKMQGCGNDYIYVD---CFSERVERPEELAREISDRHFGVGGDGLILIE--RSGRADAY 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENRDGS 115
           + + N DGSE   CGNG+RC  ++L        +R+    +T  GI    L+ ++ +   
Sbjct: 58  MHMFNQDGSEGNMCGNGIRCTAKYLYEHGLIPKERREVLIDTKSGIRKLSLLLEDGKVKE 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           ++VDMGE  L  +L            +R  +  +   F+     + +GNPHA++F+ED+ 
Sbjct: 118 VTVDMGEARLTSELP-----------ERITVSGLPLSFI----GIDVGNPHAVYFLEDNP 162

Query: 175 ------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                     DL+  G    +H  F E VN     V S   L+ R +ERG G T ACG+ 
Sbjct: 163 ALKERGFSALDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTG 222

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           A A+V A     K +  V + +LGG L I +   + H +MTG A++ + G+
Sbjct: 223 ATAAVAAGILSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGE 273


>gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
 gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
          Length = 296

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 16/276 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  + +D   C D +  +   I+   +          LI        D  +R
Sbjct: 5   FTKMHGCGNDYVYVD---CMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKADFRMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVD 119
           + N D SE + CGNG RC+ +++  +   ++ + T ET+ GI    +  ++ +     VD
Sbjct: 62  MFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLAEVD 121

Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG+ ++    +P+    +  +D+     GP    F      VSMGNPH + FVED +   
Sbjct: 122 MGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVED-VETA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA---SVVA 235
            + + G ++   P+F E  N+   ++     +  R WERG G T ACG+ ACA   + V 
Sbjct: 181 PVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYTCVT 240

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            G   K    + V+  GG L +   + + + + G A
Sbjct: 241 LGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPA 276


>gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
 gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
          Length = 1355

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/293 (31%), Positives = 140/293 (47%), Gaps = 27/293 (9%)

Query: 7    DFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            +F KM G GN  +  D   C  HD    +A++   +D   H+    D ++L+     A  
Sbjct: 1072 NFTKMHGCGNDYIYFD---CFQHDINNPEALSVRLSD--RHYGIGGDGVILVCPSDVA-- 1124

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI----LVAKENR 112
            D  +R+ N DGSE + CGNG+RCV +FL         ++  T ET+ GI     +  + +
Sbjct: 1125 DGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYNDRK 1184

Query: 113  DGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
              ++ VDMG+  L   LIP+ A        DR    P     +      VSMGNPH + F
Sbjct: 1185 VCAMKVDMGKAELTPALIPVDASKLPDPKADRIVNAPYTVDGVEYHVTCVSMGNPHCVVF 1244

Query: 171  VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSA 228
             ++D+   D+   G       +F E VN    RV    +L +R WERG G T     G+ 
Sbjct: 1245 -KNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETWACGTGAC 1303

Query: 229  ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A A         K +  ++VK++GG L+I + D+  V+MTG A   +EG ++I
Sbjct: 1304 AAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDDT-VYMTGNAVTVYEGVVEI 1355


>gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
 gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
          Length = 350

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 135/292 (46%), Gaps = 22/292 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-----FDQIMLIHDFQDASV 60
           V F KM G+GN  ++++  GCH   +SD I++ + + +        DQ ++   ++  S 
Sbjct: 5   VPFVKMHGLGNDFVIVN--GCHMPKSSD-IHSFAKEISDRELGVGCDQFII---YRQDSD 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + I N DGS  ++CGN  RC+ R L      K+   +    ++  K     +I VDM
Sbjct: 59  KINMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   +P +     +  +R+ I P      +    V + NPH + F +  L   D+
Sbjct: 119 GPPSFESSWMPDSTDLCSL-AERYMIEP------KEMICVDVANPHLVIFSK--LSKKDM 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              GN   K  +F +GVN++ AR+     ++L  WERG G T ACGS A A+  A+  L 
Sbjct: 170 GMIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLS 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
                  +    G L ++   N+ V M+G A   + G+L  +  K   +  D
Sbjct: 229 FFGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGELLKRAAKLSNEKAD 279


>gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
 gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
          Length = 335

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 23/281 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQD---- 57
           M    K+ G  N   ++D       +T D +  L+   TD               D    
Sbjct: 2   MTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLARQLTDPQDGLLGGADGLLVVDRPTR 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++  +    
Sbjct: 62  PGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQAGE---- 117

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +  DR    PV  L     F  +++ NPH I FV
Sbjct: 118 LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFV 177

Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             +     L    G+ L   +P FS+GVN++ A++   + L +RT+ERGVG T ACG+  
Sbjct: 178 NQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFTNACGTGM 237

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
            A+ +A   LH      + AV+V   GG +    H  +H +
Sbjct: 238 SATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRY 278


>gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 328

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +  
Sbjct: 61  PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     +  FD +  DR     V  L     F  +++ NPH I F+
Sbjct: 121 V----PAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+G+N++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
            AS +A    H       + +SV   GG +    H  +H +
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277


>gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091]
 gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091]
          Length = 292

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 16/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM---LIHDFQDASVDA 62
           ++F KM  +GN  +VI+     + I  +A N LS D  T    +    +I   +    D 
Sbjct: 5   IEFTKMHALGNDYIVINETET-EVIPEEAKNKLSNDICTRRFSVGSDGVIFACKSDKSDV 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
             RI N DGSE + CGNG+RC+ +++     +K+++   ET+  I    L  +++   SI
Sbjct: 64  RFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVKSI 123

Query: 117 SVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++DMG+     + IP +A S +  +     I       + +   VS+GNPHA+ F + ++
Sbjct: 124 AIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKIIMSS--VSVGNPHAVSFTDINI 181

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL  +G  +  H  F E VN+    + S   +++ TWERG G T ACG+   + V+ 
Sbjct: 182 DDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVLL 241

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDI 281
              +   N  V   + GG L I   D+N      M G+A   ++ ++ +
Sbjct: 242 GYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTV 290


>gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1]
 gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1]
          Length = 289

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 140/283 (49%), Gaps = 21/283 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K  G+GN+ +V+D      ++TS++I  +    + HF    D ++L         D  
Sbjct: 6   FVKSHGLGNEYIVLDDENIDFSLTSESIKTIC---DVHFGIGSDGVLL--KVHSEKADFG 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK--ENRDGS---I 116
           +RI N DGSE +  GNG+R   ++L       ++ FT ET  G++ A+  E  +G    I
Sbjct: 61  LRIFNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VD+G+     + IP++   D+   ++  +   +  F  N   VS+GNPH +  V D L 
Sbjct: 121 TVDIGKATFKTEDIPVSIEKDECIGEKIVVD--DREFEIN--CVSVGNPHCVIIV-DKLD 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +  +G L+  H +F    N+   +  S + +++R WERG G T A G+++ A     
Sbjct: 176 DEIVKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVM 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T+R V+V M GG L I   +  ++ MTGE ++   G L
Sbjct: 236 VKRGITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVL 278


>gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG']
          Length = 290

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 19/280 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAFI 64
           DF K  G+GN  +V  M      +T + I  L  D N     D I+L+     AS    +
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIR-LVCDRNFGVGSDGILLL---TRASEPFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK-----ENRDGSIS 117
           RI N DGSE +  GNG+R   +FL        + F  ET+ G++ A+      NR   + 
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVK 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+  +D + + LA        +   + P   L ++    +S+GNPH +FF E+ L  
Sbjct: 120 VDMGKATVDPRSVGLANPDKPFVEELLELAP--DLRIKG-TAISVGNPHFVFFREE-LDE 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+   S 
Sbjct: 176 KFMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSV 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            L K    V V+M GG L I+      + M G   +   G
Sbjct: 236 MLGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSG 275


>gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
 gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
          Length = 280

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 138/290 (47%), Gaps = 32/290 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  ++++            I   +       FDQ++++ +   +  D + +I
Sbjct: 7   FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSRFDFYCQI 66

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR----GILVAKENRDGSISVDMGE 122
            N DG+E   CGNG RC+ +++   + +K   F  IR     ++ + ++R   I+V+MG 
Sbjct: 67  FNSDGTESFQCGNGFRCLAKYIYVNINKKP--FHIIRTKKHTVITSIKDRGKEITVNMGT 124

Query: 123 P-ILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P  +  K++ +      R     +++  H   VN           +GN H +F ++D   
Sbjct: 125 PRFISKKVLTVFQKEWLRQLLTFEKEYNHFEMVN-----------IGNSHLVFIIQDSK- 172

Query: 177 HYDLASFGNL----LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             ++     L    L  + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACAS
Sbjct: 173 --EIVRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACAS 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V         N  V V    G L + W   ++ +FMTG A   ++G + I
Sbjct: 231 VAFGIKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280


>gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 275

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 19/279 (6%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+G GN  + V D     ++  S A+           D ++++   Q A  +A + I
Sbjct: 3   FYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVA--EAKMII 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120
           IN DGS    CGN +RC  +++     + +  F+ ET  G+    ++ ++ +   + V M
Sbjct: 61  INADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKVYM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P    + IPL+   D +D +    G            V +G PH I F   D   Y +
Sbjct: 121 GKPSYRAEDIPLSHGEDFIDSEITCNGKT-----YKATTVLVGVPHTIIFENTD--EYVV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L KH +F+EG N++  ++     + + TWERG G T ACG+   ASVV +  L 
Sbjct: 174 NEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKKLG 233

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             N  + + VK  GG L+IE + ++ V+M G A+  +EG
Sbjct: 234 LVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEG 271


>gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73]
 gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas
           albilineans]
          Length = 286

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 15/284 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           + + + F KM+G GN  +V+D+R    +   DA  A+   D  HF    DQI+ I   ++
Sbjct: 8   RGARLRFTKMQGAGNDFVVLDLR--DGSSPPDAALAVRLADR-HFGIGCDQILTIEPARN 64

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115
           A+  A  RI N DGS    CGNG RCV  +L          F  E+  G    +   D  
Sbjct: 65  AAALASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQ 124

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P    + +PL    D +D    ++ P++   +R    VSMGNPHA+  V   +
Sbjct: 125 FAVAMGVPRFAPEDVPLIGFPDALDE---YLLPMHGESVRF-GAVSMGNPHAVLEV-GLV 179

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL +H  F + VN+   +V   + L LR +ERGVG T ACGS ACA+   
Sbjct: 180 DAAPVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAV 239

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
                + +R V V + GG L ++W H    + M+G A   ++G+
Sbjct: 240 LMQRGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGE 283


>gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 328

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 23/281 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MNKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAEG 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+
Sbjct: 121 V----PAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
            AS +A    H       + +SV   GG +    H  +H +
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGY 277


>gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
          Length = 270

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 132/285 (46%), Gaps = 35/285 (12%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62
           + F KM G GN  + ID R G  D I    +   +   N     D +MLI +   A  D 
Sbjct: 3   IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  NCDGSE + CGNG RC  RF   + +  +  TFET+ GI+ A+     ++ V + 
Sbjct: 61  KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120

Query: 122 EPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            P     D+++        ++D  +  I  VN            G PHA+ F  +D+ + 
Sbjct: 121 TPFDEKSDYQI--------ELDEKKLDISSVN-----------TGVPHAVMFC-NDIENI 160

Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSA--ACASVV 234
           D+   G+ +  H  F   G N +   +     L +RT+ERGV G T ACG+   ACA   
Sbjct: 161 DIMKLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               L K+   V  K   G +L  + +N  V++ GEA+  ++G+L
Sbjct: 221 VKKGLTKS--PVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGEL 263


>gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila]
 gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila
           SB210]
          Length = 310

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 37/308 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNTHF--DQIMLIH---- 53
           ++ F K  G+GN  ++ID R      C +      I A   D +     D +M +     
Sbjct: 2   ILHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENESE 61

Query: 54  -DFQDA-SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVA 108
            D QD    D   +I N DG E Q CGNG+RC  R++  +     +K     T  G+L  
Sbjct: 62  KDKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLEC 121

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFD------------KMDRDRFHIGPVNHLFLRN 156
           +E   G    ++G+   +   IP A  F+            K++++  H   ++HL    
Sbjct: 122 EELSLGLYRTNIGKATAEISKIP-ANPFNSDAESVVINQPLKINQN-LHQQNLSHLSEET 179

Query: 157 PFV--VSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLR 213
            +V  V++GNPH + +V DD+   ++   G  L ++  +F + VN+   ++    +L +R
Sbjct: 180 HYVTFVNVGNPHCVIYV-DDVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMR 238

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKML-GGGLLIEWHDNNHVF-MTGEA 271
            +ERG G T ACG+ ACASV A G L+K N   S  +L GG L I  +  ++   + G A
Sbjct: 239 VYERGCGETMACGTGACASVFA-GILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPA 297

Query: 272 KKEWEGKL 279
            K +EG +
Sbjct: 298 AKVFEGSI 305


>gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
 gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
          Length = 334

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 22/253 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170
           V    P    ++ P+     A  FD +  DR      P  +  LR    +++ NPH I F
Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFS-SIAVPNPHLISF 175

Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHK 241
             A+ +A  CL K
Sbjct: 236 MSATSLAF-CLTK 247


>gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
 gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
          Length = 334

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 132/268 (49%), Gaps = 23/268 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       +T + + + +   +D  T      D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ +  + SF  +T+   L  ++++D + +
Sbjct: 61  EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKDFAPN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  FD +  DR     +  ++    F  +++ NPH I F+
Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L + G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            A+ +A    H      +  +SV   GG
Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGG 264


>gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
 gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
          Length = 276

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 132/284 (46%), Gaps = 23/284 (8%)

Query: 5   MVDFAKMEGIGNKILVIDM---RGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
           M++F K+ G GN  +VID        +N  +D A+           D I+ I     A  
Sbjct: 1   MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYISGSDKA-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--- 115
           D  +R++  D SE + CGNG+RC+V++      +     T ETI  +   K  +D     
Sbjct: 59  DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118

Query: 116 ISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + V+MG+P+     IP    S D       H  PV+        VV+ G PHA+ FVE+ 
Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHDYPVS--------VVNTGVPHAVIFVEN- 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              +++ +    +     F  G N++  R+ S + + +RT+ERGV   T +CG+ + AS 
Sbjct: 170 -LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASA 228

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             S  L K N  V V   GG L IE      ++M G A+  ++G
Sbjct: 229 YISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKG 272


>gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
          Length = 329

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 23/280 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-------FDQIMLIHDFQD 57
           M +  K+ G  N   ++D       +T D + AL+    +         D +++++    
Sbjct: 1   MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R   + F  +T+   L  ++  D    
Sbjct: 61  EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           +  G P    ++ P+     A  +D +  DR     V  L     F  +++ NPH I FV
Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++ +  +L   G  L  ++P FS+GVN++   +     + ++T+ERGVG T ACG+   
Sbjct: 177 DENGFK-ELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF 266
           A+ +A   +H       + ++V   GG +    H  NH +
Sbjct: 236 ATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRY 275


>gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 164

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 120 MGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP L        R+ F     NH +      VSMGNPHA+ FV DD+   
Sbjct: 1   MGAPRLTRAEIPMLGEGETPFIRENFLYN--NHRYAFT--AVSMGNPHAVIFV-DDVEQA 55

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS  
Sbjct: 56  PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 115

Query: 239 LHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 116 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 161


>gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
 gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
          Length = 278

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 28/280 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT---HF----DQIMLIHDFQDASV 60
           F+KM+  GN  ++++       +   ++N   T       HF    D +M       A +
Sbjct: 3   FSKMQAAGNDFILVN------GMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKADI 56

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRD 113
             +    N DGS  + CGNG+RC  +F+     +K++ F+ ET  GI   K     E   
Sbjct: 57  KMYYY--NSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNI 114

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + VDMG+     K IP     + +  +   I     +F      V MG PH   FVE+
Sbjct: 115 EYLEVDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVFSS----VLMGVPHTTIFVEN 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS- 232
               YD+   G+L+ K+ +F E  N++ A++ + +++ ++TWERG G T  CG+  CA+ 
Sbjct: 171 -FDEYDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATA 229

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +A          + +   GG L IE  +N  + M+G+A+
Sbjct: 230 ALAYKLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAE 269


>gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
 gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
          Length = 299

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 30/227 (13%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  Q CGNG+R  VR+L        K     T  G+     N DG+I+ D+
Sbjct: 78  FMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLNDDGTITADL 137

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L       A    + D    H  P  H        V MGNPHA+ FV+D      L
Sbjct: 138 GEPALPGP----AGIVVEAD---GHQWPATH--------VDMGNPHAVVFVDD------L 176

Query: 181 ASFGNLL-----AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              G L+     +    F  GVN+         ++ +R  ERG G T +CG+  CA  VA
Sbjct: 177 REPGPLVDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCAVTVA 236

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    +  R V+  V +LGG + + W  +NHV +TG A     G+ D
Sbjct: 237 SARAARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFD 283


>gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 306

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 128/297 (43%), Gaps = 41/297 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAI-----NALSTDDNTHFDQIMLIHDFQDA 58
           M  F K + +GN  +VID R    +    DA+     N     D   +  I  +H    A
Sbjct: 1   MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPVH----A 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDG 114
           S    +RI N DGSE +  GNG+R     + +R     + FT  T+ G    +  +   G
Sbjct: 57  SRPVQLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAG 116

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----------SMGN 164
            +SV MGEP  +   +P+             +G +  L +  P +V          ++GN
Sbjct: 117 VVSVGMGEPCFEAAAVPM-------------LG-ITGLAVEQPLLVDGRQLTVTALNLGN 162

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+   E        A  G L+A+H  F    N+   RV    ++ +  WERG G T A
Sbjct: 163 PHAVVLTEHPTRELACA-LGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLA 221

Query: 225 CGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            GS+ CA+   +  L +  T   ++V+M GG + +    +  V MTG A+    G L
Sbjct: 222 SGSSGCAATAVAHRLGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278


>gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
 gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
          Length = 330

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 25/282 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  NK  ++D       ++   + AL+   T+  T      D +++I D   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 +++IN DGS    CGNG+R V R+L+ +  +  F  ET+   L      D    
Sbjct: 61  PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHREADLADN 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
             + SV++       + +P    FD +  D      V        F  +S+ NPH I FV
Sbjct: 121 VPTFSVEISPVTFAKETLP----FDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176

Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +++  H   L   G +L   +P F +GVN+S A++    +L +RT+ERGVG T ACG+  
Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKTNRA-----VSVKMLGGGLLIEWHDNNHVF 266
            A+ +A  CL+    A     +SV   GG +    H  +  F
Sbjct: 237 SATSLAF-CLNHPEMADFDELISVYNPGGMVKTRVHSRDDTF 277


>gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
 gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
          Length = 324

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 139/290 (47%), Gaps = 29/290 (10%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDASVDAFI 64
           K  G GN  ++ID     D  T +   +LS   +D       D ++ I + +    DA +
Sbjct: 7   KCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNSEHC--DARM 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG--- 121
           R+ N DG+E + CGNG+RCV R+   ++ +K    ET++  L  ++  D  +  DM    
Sbjct: 65  RMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTED--LYPDMKTYE 122

Query: 122 ---EPI-LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176
              EP+ LD   +PL ++      DR    P+  L     F  +S+ NPH +  V +D+ 
Sbjct: 123 VAIEPVSLDPVSLPL-KTVHAPHIDR----PIPALSDNLSFTALSVPNPHVVTKV-NDVP 176

Query: 177 HYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           H D  S G L      +F  GVN+S  +  +   + ++T+ERGVGLT ACG+A  AS + 
Sbjct: 177 HRDAESIGRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAMSASSLV 236

Query: 236 S--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD 280
           S     +  N  ++V   GG +    H  + V+   + G A  E+   L+
Sbjct: 237 SVLNAGNDLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLE 286


>gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c]
 gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c]
          Length = 284

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 139/279 (49%), Gaps = 19/279 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D+R   D      +  ++   + HF    DQ++ I   +   V A 
Sbjct: 12  FTKMQGAGNDFVVLDLR---DGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDM 120
            RI N DGS  Q CGNG RCV  +L     +  + F  ++ ++  LV    +D   +V+M
Sbjct: 69  YRIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKD-EYAVEM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179
           G P+ + + IPL+   +       ++  +    LR    VSMGNPHA+  VE DL     
Sbjct: 128 GLPVFEPERIPLSGFPNACGE---YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V     
Sbjct: 182 VERIGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQR 241

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  R V V + GG L ++W      V ++G AK  ++G
Sbjct: 242 GRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDG 280


>gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
 gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
          Length = 329

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56
           MV   K+ G  N+  ++D       +  + + AL+   TD         D +++I H   
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           D ++ + +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L    +R+ S+
Sbjct: 61  DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
           +   G P    ++ P+     +  FD +D D      V        F  +++ NPH I F
Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175

Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +++ + D L   G  L + +P F++GVN+S A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VSEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271
             A+ +A  CL+          +SV   GG +    HD++   H+ + G A
Sbjct: 236 MSATSLAF-CLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285


>gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
 gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
          Length = 271

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 129/285 (45%), Gaps = 26/285 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           S + F K    GN  LVI+ R       S A    + +     D I  +    D S   F
Sbjct: 2   SGIGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLDRRADGSF--F 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVD 119
           +R+ N DGSE +  GNG RCV  +L +   R+     T  GI    L+ ++  +  I   
Sbjct: 60  LRLFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESA 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P    +++P A            I  VN +      +V++GNPH + F + + +   
Sbjct: 120 MGVP----RVMPRA----------IEIAGVNGVI--EGAMVNVGNPHYVIFPDSEDFSSH 163

Query: 180 LASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             S+  L AK    P+F  G N+   RV + + ++ R +ERG G T + G+  CAS  A+
Sbjct: 164 GMSWQELGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAA 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             L    R ++    GG   + W D+ + + +TG A+   +G+++
Sbjct: 224 MTLRAVARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268


>gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 284

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115
               A   I NCDGS  + CGNG RCV  +L      + + F  ++       +    G 
Sbjct: 63  EGAVAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGR 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGIPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
                +  R V V + GG L I W  D+  V M+G A      EW G
Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284


>gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32]
 gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463]
          Length = 334

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 22/253 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170
           V    P    ++ P+     A  FD +   R      P  +  LR    +++ NPH I F
Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFS-SIAVPNPHLISF 175

Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHK 241
             A+ +A  CL K
Sbjct: 236 MSATSLAF-CLTK 247


>gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 329

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56
           MV   K+ G  N+  ++D       +  + + AL+   TD         D +++I H   
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           D ++ + +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L    +R+ S+
Sbjct: 61  DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
           +   G P    ++ P+     +  FD +D D      V        F  +++ NPH I F
Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175

Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +++ + D L   G  L + +P F++GVN+S A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VSEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271
             A+ +A  CL+          +SV   GG +    HD++   H+ + G A
Sbjct: 236 MSATSLAF-CLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285


>gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
 gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%)

Query: 8   FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53
           F+KM G GN  +VI+               + CH      A            D I+++ 
Sbjct: 3   FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILV 107
             ++ + D  + IIN DGS    CGNG+RC  +++  +   K    + + G       L 
Sbjct: 51  --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            ++++  SI+V+MG      K IP A   +++   +  +G  N         + MG PH 
Sbjct: 109 IEKDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I F E++ Y  +   FG  + K+ +F +G N++  +V    ++++RTWERG G T ACG+
Sbjct: 164 IIF-EEEKYPIE---FGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             CASV+A+  L   ++ V V + GG L +   D+  V M G A
Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262


>gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
 gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
          Length = 329

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 30/291 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56
           MV   K+ G  N+  ++D       +  + + AL+   TD         D +++I H   
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           D ++ + +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L    +R+ S+
Sbjct: 61  DGTLGS-MQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAV--HRETSL 117

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
           +   G P    ++ P+     +  FD +D D      V        F  +++ NPH I F
Sbjct: 118 AP--GVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISF 175

Query: 171 VEDDLYHYD-LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +++ + D L   G  L + +P F++GVN+S A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VSEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271
             A+ +A  CL+          +SV   GG +    HD++   H+ + G A
Sbjct: 236 MSATSLAF-CLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNA 285


>gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
 gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
          Length = 355

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 22/253 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 22  MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 81

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 82  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 141

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFF 170
           V    P    ++ P+     A  FD +   R      P  +  LR    +++ NPH I F
Sbjct: 142 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFS-SIAVPNPHLISF 196

Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+ 
Sbjct: 197 VNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTG 256

Query: 229 ACASVVASGCLHK 241
             A+ +A  CL K
Sbjct: 257 MSATSLAF-CLTK 268


>gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 171

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 113 DGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           D  I V+MGEPI +   IP  A  F+K    R  I  V          VSMGNPH +  V
Sbjct: 8   DNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLC------GAVSMGNPHCVVQV 61

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+   ++   G+LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA
Sbjct: 62  -DDIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACA 120

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           +V         N  V V + GG L+IEW+   H ++MTGEA   ++G
Sbjct: 121 AVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 167


>gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
 gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
          Length = 280

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 143/288 (49%), Gaps = 27/288 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHF----DQIMLIH--DFQDA 58
           V F KM+G GN  +V+      D    + ++ L+    + HF    D +++++     D 
Sbjct: 3   VQFKKMQGTGNDFIVVKY---DDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIADI 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
            +D +    N DGS    CGNG+RC  +F+     ++ K F+ ET+ GI    ++ ++  
Sbjct: 60  RMDYY----NSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGT 115

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             S+ V+MG+   D + IP+          +  +G  + +       VSMG PH I F E
Sbjct: 116 VKSVEVNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFIIT----AVSMGVPHVIIFTE 171

Query: 173 D-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL    +  FG L+ KH +F +  N++       +++ +RTWERG G T ACG+ + +
Sbjct: 172 KLDLEQ--IKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTS 229

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +V  +  L   N  V+V++ GG + I+  ++ ++FM G A+    G+ 
Sbjct: 230 AVAVANKLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277


>gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 284

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 133/287 (46%), Gaps = 19/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115
               A   I NCDGS  + CGNG RCV  +L      +   F     +   A E+ DG  
Sbjct: 63  EGAVAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDR 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGIPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
                +  R V V + GG L I W  D+  V M+G A      EW G
Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284


>gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
 gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
          Length = 283

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 138/283 (48%), Gaps = 15/283 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQ-DAS 59
           S+ + F+KM G GN  +VID+R      T + + A   D +T    DQI+ I   + D S
Sbjct: 6   STALRFSKMHGAGNDFVVIDLRDGTAPPTPE-LAARLADRHTGVGCDQILTIEAPRADGS 64

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSI 116
           V ++ RI N DGS  + CGNG RC+  +L      +   F  I   L + E +   DG  
Sbjct: 65  VASY-RIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVF-VIDSPLASHEVKVLGDGQF 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V MG P  +   +PL   F    R+ + + P+    +R    VSMGNPHA+  V   + 
Sbjct: 123 AVTMGVPAFEPSNVPLV-GF-AHPREEYLL-PLQGESVRF-AAVSMGNPHAVIEV-GLID 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL +H  F   VN+  A+V   +   LR +ERGVG T ACGS ACA+ V  
Sbjct: 178 AAPVERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTL 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
               +  R   + + GG L I+W  D   V M G     +EG+
Sbjct: 238 MQRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
 gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
          Length = 270

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 117/269 (43%), Gaps = 18/269 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  +++  R      N++  A N          DQ ++  ++ +      
Sbjct: 5   INFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNNVYT--- 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T    +  L+        ISV++G  
Sbjct: 62  MIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVGNV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +   +P         RDR       ++  L+    V +GNPH I F    L   D   
Sbjct: 122 SFNETWMP--------SRDRIWAFAERYMLDLKETMCVDIGNPHLIIF--SKLEPQDQKI 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L    +F +GVN++ A V     + L  WERG GLT ACGS AC S  A   L   
Sbjct: 172 IGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFV 230

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +   +V    G L+++  D N + M GEA
Sbjct: 231 HSPSTVVFKYGNLIMQEEDGN-IIMQGEA 258


>gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018]
          Length = 333

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 26/298 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  ++ID    + N+  +     AI A +       D I+ +   +    
Sbjct: 14  INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQ--KSDIC 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115
           DA +RI N DGSE + CGNG+RCV R++   + ++S   ET++     K   D      +
Sbjct: 72  DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--D 173
           + +D+    LD K +PL    +K+  D+  I  ++  F  +   VS+ NPH I  V   D
Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDK--IPELSDEF--DFTAVSITNPHLIAIVNNID 187

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                ++   GN  +   +  +GVN+S  +V    ++ ++T+ERGVGLT +CG+A  AS 
Sbjct: 188 SDKLVEIGKKGN--STKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASS 245

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKTGK 285
           + S    K   + A++V   GG +    H     N  V   G A   +EG +++   K
Sbjct: 246 IVSCIGEKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRK 303


>gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
 gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
          Length = 300

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 43/305 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAF 63
           F KM G GN  + ++   C +    +         + H     D ++L+   + A  D  
Sbjct: 3   FTKMHGCGNDYVYVN---CFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCE 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + I N DGS+ + CGNG+RCV +F+  +  + +   T +T  G+    L     +   + 
Sbjct: 58  MDIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVR 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHAIFFVED- 173
           V+MG+  +    +P+       D +     P+   +  F      VSMGNPHA+ F ++ 
Sbjct: 118 VNMGKAEIVASKVPVI-----ADTELAVGAPITVKDQAFTYT--AVSMGNPHAVVFTDEN 170

Query: 174 --------------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
                         DL    +   G     HP F + +N     V    ++++R WERG 
Sbjct: 171 PALANAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGS 230

Query: 220 GLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWE 276
           G T ACG+ ACA+ VAS    K  R   V+VK+LGG L+IEW +  N V+MTG A   +E
Sbjct: 231 GETMACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFE 290

Query: 277 GKLDI 281
           G+LD+
Sbjct: 291 GELDL 295


>gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
 gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
          Length = 270

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 32/285 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF--DQIMLIHDFQDA 58
           S ++F KM G+GN  ++++ R   D ++S  ++ L+    D +T    DQ ++  +  D 
Sbjct: 3   SKINFVKMHGLGNDFVIVNKR---DLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHND- 58

Query: 59  SVDAFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               F  +I  N DGS  + CGN  RC+ + +     +K  T       L+     + +I
Sbjct: 59  ----FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNI 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV++G    +   +P   S DK+    + +     + L+    V +GNPH + F    L 
Sbjct: 115 SVNVGSVSFNEAWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLE 165

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D    G  L    +F++GVN++ A V     + L  WERGVG T ACGS AC S  A 
Sbjct: 166 PQDQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAG 224

Query: 237 ---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              G +H    A S+ +   G+L    +N ++ M G AK   +G+
Sbjct: 225 LKLGFIH----APSMVVFKHGILTMKEENGNIIMQGSAKLVAQGE 265


>gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
 gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 141/295 (47%), Gaps = 43/295 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+GIGN  + ++   C +   +D         + HF    D ++LI      + D  
Sbjct: 9   FTKMQGIGNDYVYVN---CFEETVADPAAVARFVSDRHFGIGSDGLILIG--PSGTADCR 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK---ENRDGS- 115
           + + N DGS    CGNG+RCV ++          R+S T ET+ G+   +   E ++G  
Sbjct: 64  MDMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIEFTVEEKNGRF 123

Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               ++VDMGE  L  +L P   + D   RD   +G            +S+GNPHA++F+
Sbjct: 124 TARLLTVDMGEARLTSEL-PEPINVDG--RDYSFVG------------ISVGNPHAVYFM 168

Query: 172 E--DDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           +  DDL    L   G     HP F  + VN    ++     + +R WERG G T ACG+ 
Sbjct: 169 DSIDDLR---LDRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTG 225

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           A AS  A+  +  T   V V++ GG L I    ++ H+FMTG A + + G +DI 
Sbjct: 226 ATASAAAAILMGYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIP 280


>gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 284

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 134/287 (46%), Gaps = 19/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R       +D    L+   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLA---DRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
               A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G 
Sbjct: 63  EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGR 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGMPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
                +  R V V + GG L I W  D+  V M+G A      EW G
Sbjct: 238 LMQRGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWNG 284


>gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
 gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
          Length = 281

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 138/290 (47%), Gaps = 22/290 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F K +G GN  ++++ +   +    D     S     HF    D ++++    +   
Sbjct: 1   MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLILKYVANM-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRDGS 115
             F+   N DGS+   CGNG+RC   +L +    +  +FT +T+ G   I    EN    
Sbjct: 59  -PFMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             V+MGEP+ D K +        ++++RF     +          + MG  H++ FV +D
Sbjct: 118 AKVNMGEPVFDVKKLI------NIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-ND 170

Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              Y++   G+ +  +  +F + VN++  +V    ++++ TWERG G T ACG+ A AS 
Sbjct: 171 FSDYNIDDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASA 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           V +         ++V + GG L+I++    +  +MTG ++K  EG+   K
Sbjct: 231 VLARIYGYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQYIFK 280


>gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
 gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
          Length = 270

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 24/274 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ +L  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHND---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +G    +   +P   S DK+    +R+ I       L+    V +GNPH + F    L  
Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKETICVDIGNPHVVIF--SKLEP 166

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D    G  L    +F++GVN++ A V     + L  WERGVGLT ACGS AC S  A+G
Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGS-FAAG 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             H    + S  +   G L    +N ++ M G A
Sbjct: 225 LKHGFIHSPSTIVFKHGNLTMKEENGNIIMQGAA 258


>gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
 gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
          Length = 299

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 31/285 (10%)

Query: 8   FAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           FAK+ G GN  +++D            +  AI           D ++ +   Q +  D  
Sbjct: 23  FAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--DLG 80

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL-VAKENRDGSI--SVD 119
           +R+   DGSE + CGNG+RC+ ++   S    +SF  ET+ GI+ +    RDGS    VD
Sbjct: 81  MRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWARVD 140

Query: 120 MGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLY 176
           MG P  +   IP   S D MD     F +  VN            G PHA+ FV+D D+ 
Sbjct: 141 MGVPRFNRPSIPACGSGDLMDEQMGEFRVCAVN-----------TGVPHAVIFVDDLDID 189

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            Y+ A     +    +F EG N+   ++ S  SL +RT+ERGV G T +CG+ A AS   
Sbjct: 190 IYEAAP---PIRHCSVFPEGANVDFVKLGS--SLQIRTFERGVEGETFSCGTGAVASASV 244

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +  +      V V+  GG L+I + + +  FM G A   +  ++D
Sbjct: 245 ARRMGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288


>gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
          Length = 335

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A +   T+  T +    D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116
            +    + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VAK++   S 
Sbjct: 61  TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLAS- 117

Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169
               G P    ++ P++ +     F  +  DR    + P  H  L+    V++ NPH I 
Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172

Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           FV +++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+
Sbjct: 173 FVSKEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232

Query: 228 AACASVVASGCLHKTNRA 245
              A+ +A    H    A
Sbjct: 233 GMSATTLAFILTHPQEAA 250


>gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
 gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
          Length = 287

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 24/293 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  ++F KM+G GN  +  +   C +   S+         + HF    D I+LI   + 
Sbjct: 6   RSEGMEFTKMQGCGNDYIYFN---CMEQELSEPGPLSVRLSDRHFGIGGDGIVLI--CRS 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI--LVAKENR 112
              DA +R+ N DGSE + CGN +RCV ++L+       +     ET+ G+  LV  + R
Sbjct: 61  DIADAKMRMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQR 120

Query: 113 DG--SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            G  S++VDMG   +    +P+     ++      IG  ++    N   VSMGNPH +  
Sbjct: 121 SGVRSVTVDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVL 176

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSA 228
             DD+   ++   G       +F E VN    ++T   +L +R WERG G T     G+ 
Sbjct: 177 C-DDVEGLEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGAC 235

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A A       L      + V++ GG LLI++ D   V MTG A K ++G + +
Sbjct: 236 AAAVAAVENGLCAKGEDIIVRLNGGNLLIKYTDKT-VTMTGTADKVFDGTIKL 287


>gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 259

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 40/284 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+ +GN  + ++     + I + ++ A    D  HF    D ++LI DF + + D  
Sbjct: 3   FTKMQALGNDYIYVN--AMEEKIENPSVLAQKLSDR-HFGVGGDGLILI-DFSEKA-DVK 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK---ENRDGSISV 118
           +R+ N DG+E + CGNG+RCV +++     +K K+   ET  GI+  K   +    +I  
Sbjct: 58  MRMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILA 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P +  +   +    ++   D                 +SMGNPH + +V+D     
Sbjct: 118 DMGQPSIGEENKKIVMGEEEYTAD----------------YISMGNPHLVVYVDDP---- 157

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                  +  K     E VN+    V +   + +R  ERG G T ACG+ ACA+ V+   
Sbjct: 158 -----KRIQMKEWQEYEKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSCMK 212

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  V V+M GG L +EW  D+NH+F  GEAK  +EG++DI
Sbjct: 213 KQYVDNYVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256


>gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 346

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 68  RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 124

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
               A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G 
Sbjct: 125 EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGR 184

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  D   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 185 YAVAMGMPQFDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRV 239

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 240 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 299

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
                +  R V V + GG L I W  D+  V M+G A      EW G
Sbjct: 300 LMQRCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 346


>gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12]
 gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 278

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 33/293 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDF 55
           ++S  + F KME  GN  ++ D R    N     IN L+    + HF    D I+     
Sbjct: 7   LRSKKMKFWKMEAAGNDFVIFDGR----NRKIREINKLAKKLCDRHFGIGADGILFCE-- 60

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVA 108
             +  D  +   N DGS  + CGNG+RC+ R++     + + + T ET  G+      V 
Sbjct: 61  SSSIADMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVD 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           ++N+  S+ V MG+   +W+         +   +R  I     +F R    V++G PH  
Sbjct: 121 EKNQVSSVQVKMGKA--EWE--------KEFQEERVEIEGREFVFYR----VTVGVPHIA 166

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             VED +   +L  +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C + 
Sbjct: 167 ILVEDFMKDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTG 226

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +  V    L K +        GG + +E  D + V + G+A   + G +D+
Sbjct: 227 CSSCGVILQHLQKISGEAHFYTEGGDVFVEVKD-DVVMIYGKANFVFAGDIDV 278


>gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
          Length = 278

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 128/274 (46%), Gaps = 16/274 (5%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM+  GN  ++++ M     N    A            D +M   +   A +   +  
Sbjct: 3   FSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKADIK--MNY 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD--GSIS---VD 119
            N DGS  + CGNG+RC  +F+     +K+  F+ ET  GI   K +    G+I    VD
Sbjct: 61  YNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLKVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M +     K +P     + +  +   IG    +F      V MG PH   FVED    YD
Sbjct: 121 MEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIFSS----VLMGVPHTTIFVED-FDEYD 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGC 238
           +   G+L+ K  +F E  N++ A+VT+ +++ ++TWERG G T  CG+  CA+  +A   
Sbjct: 176 VNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAHKL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
                  + +   GG L IE  ++  + M+G+A+
Sbjct: 236 GKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAE 269


>gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 260

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 112/270 (41%), Gaps = 27/270 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + FAK    GN  LVID     DN +  +       +    D +  I    +A ++A  R
Sbjct: 4   IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILPTSEADIEA--R 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI----LVAKENRDGSISVDMG 121
           +IN DGSE +  GNG RCV   ++           T  G+    L             MG
Sbjct: 62  LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P +  +L    R  +                      +S GNPH + FVE+  +     
Sbjct: 122 KPEIAGELTVKTRHHETTG-----------------IQLSTGNPHFVIFVEE--FEEGWQ 162

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
              + +A+ P F  G N+   +V    SLD+R +ERGVG T + G+ +CAS VA+    K
Sbjct: 163 VLADSVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGK 222

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
               V V   GG   +EW  +  + +TG A
Sbjct: 223 CESPVRVATPGGAQTVEW--SGEITLTGPA 250


>gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 284

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 132/287 (45%), Gaps = 19/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
               A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G 
Sbjct: 63  EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGR 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  D   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGMPQFDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
                +  R V V + GG L I W  D+  V M+G A      EW G
Sbjct: 238 LMQRCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 284


>gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
 gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
          Length = 285

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 142/283 (50%), Gaps = 17/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           ++F K  G+GN  +V D    +  +T   +  L  D N     D I+++    +      
Sbjct: 1   MEFIKSHGLGNDYIVFDKEKINFPLTEKNVR-LICDRNYGIGSDGILILEKINNQEFK-- 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-----ILVAKENRDGSI 116
           +RI N DGSE +  GNG+R + +++        K F   T+ G     I+  ++ R  SI
Sbjct: 58  VRIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSI 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+       IP+  S  ++  +   I   N   ++    +S+GNPH +FFV D++ 
Sbjct: 118 EVEMGKITFKSSEIPVLGSEREIIDEELKI---NDETIKVT-CLSIGNPHCVFFV-DEIN 172

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + S G  +  HPMF   +N+ + +V S + +++R WERG G T A GS++CA+  AS
Sbjct: 173 EEKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASAS 232

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 N  V V M GG L ++ + +  V + G A++ ++G+L
Sbjct: 233 YKKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGEL 275


>gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
          Length = 289

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 20/286 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F K  G+GN  + +D +     +T+  I A+   +     D I+ +   ++A  D  +R
Sbjct: 4   SFFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA--DFGLR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE---NRDGSI---S 117
           I N DGSE +  GNG+R    FL  T + KR+SF+ ET +G LV  E   +R+G +   +
Sbjct: 62  IFNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVET-KGGLVHVELTLDRNGQVNGAT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE--DD 174
           VDMG      + +P       +      + P+  +     F  VS+GNPH + F +    
Sbjct: 121 VDMGRASFRPRDLPCT-----IKAPELIMQPIKAVGQSLRFTGVSVGNPHCVVFRDRGGS 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               DL   G  L  HP F +  N+ +A  T   ++ +  WERG G T A GS+ACA   
Sbjct: 176 WTREDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSACAVAS 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A   L      V V   GG L I       + + G   + ++G+  
Sbjct: 236 AGVRLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRFS 281


>gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
 gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
          Length = 272

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 44/284 (15%)

Query: 8   FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53
           F+KM G GN  +VI+               + CH      A            D I+++ 
Sbjct: 3   FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108
             ++ + D  + IIN DGS    CGNG+RC  +++  +   K       T + ++ I + 
Sbjct: 51  --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108

Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            EN +  SI+V+MG      K IP A   +++   +  +G  N         + MG PH 
Sbjct: 109 IENDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I F E++ Y  +    G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+
Sbjct: 164 IIF-EEEKYPIEC---GREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             CASV+A+  L   ++ V V + GG L +   D+  V M G A
Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262


>gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
 gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
          Length = 335

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + AL     D  T      D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET++  L    + D    
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     A  FD++  +R     V        F  +++ NPH I FV
Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 172 ED-DLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D +L    L   G  L  ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK 241
            A+ +A    H 
Sbjct: 237 SATTLAFALTHP 248


>gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
 gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
          Length = 335

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + AL     D  T      D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET++  L    + D    
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     A  FD++  +R     V        F  +++ NPH I FV
Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 172 ED-DLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D +L    L   G  L  ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK 241
            A+ +A    H 
Sbjct: 237 SATTLAFALTHP 248


>gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
 gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
          Length = 272

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 44/284 (15%)

Query: 8   FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53
           F+KM G GN  +VI+               + CH      A            D I+++ 
Sbjct: 3   FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108
             ++ + D  + IIN DGS    CGNG+RC  +++  +   K       T + ++ I + 
Sbjct: 51  --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108

Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            EN +  SI+V+MG      K IP A   +++   +  +G  N         + MG PH 
Sbjct: 109 IENDKVKSINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I F E++ Y  +    G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+
Sbjct: 164 IIF-EEEKYPIEC---GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             CASV+A+  L   ++ V V + GG L +   D+  V M G A
Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262


>gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
 gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
          Length = 283

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 131/301 (43%), Gaps = 51/301 (16%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K +G+GN  +V+D RG  ++I + A +    D         ++         A + + N 
Sbjct: 9   KYQGLGNDFVVLDRRGSGEDIDA-ATSRWMCDRRLGIGGDGVLALLPSERGIARMVVHNA 67

Query: 70  DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN--RDGSISVDM----- 120
           DGS  + CGNG+RC V+FL   S         ET  G+L    +    G ++VD+     
Sbjct: 68  DGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGPA 127

Query: 121 ------------GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                       G+P LD  L+P                   H  LR  + VSMGNPH +
Sbjct: 128 RLVAPNLPSGATGQPFLD-ALVP------------------GHPPLRA-YAVSMGNPHMV 167

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D    D +  G LL  HP F +  N+   RV S + L +  WERG GLT ACG+ 
Sbjct: 168 LL---DQPLEDASRLGPLLEHHPSFPDRTNVEFVRVDS-DGLTVVVWERGCGLTQACGTG 223

Query: 229 ACASVVASGCLHKTNRA---VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284
           ACAS VA+  L K   A   + V + GG L I    D + + + G     +EG +   +G
Sbjct: 224 ACASAVAA-VLAKRLPADAWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSG 282

Query: 285 K 285
           +
Sbjct: 283 R 283


>gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
 gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
          Length = 283

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 13/282 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           S  + F+KM G GN  +VID+R      T + + A   D +T    DQI+ I   +    
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTVPPTPE-LAARLADRHTGVGCDQILTIEAPRAEGS 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSIS 117
            A  RI N DGS  + CGNG RC+  +L      +   F  I   L + + +   DG  +
Sbjct: 65  VASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAF-VIDSPLASHQVKVLGDGHYA 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P  +   +PL   F    R+ + + P+    +R    VSMGNPHA+  V   +  
Sbjct: 124 VTMGVPAFEPANVPLV-GFAH-PREEYLL-PLQGETVRF-AAVSMGNPHAVIEV-GLIDA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+LL +H  F   VN+  A+V +     LR +ERGVG T ACGS ACA+ V   
Sbjct: 179 APVERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLM 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
              +  R   + + GG L I+W  D   V M G     +EG+
Sbjct: 239 QRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 284

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 17/278 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D+R   D         ++   + HF    DQ++ I   +   V A 
Sbjct: 12  FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG
Sbjct: 69  YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 128

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-DL 180
            P+ + + IPL+   + +     ++  +    LR    VSMGNPHA+  VE DL     +
Sbjct: 129 LPVFEPERIPLSGFPNALGE---YVLSLQGEVLRC-GAVSMGNPHAV--VEIDLIDVAPV 182

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      
Sbjct: 183 ERIGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRG 242

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
           +  R V V + GG L ++W      V ++G A+  ++G
Sbjct: 243 RVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280


>gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 278

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 40/295 (13%)

Query: 8   FAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  + +D  R   DN    A+           D ++LI     A  D  +R+
Sbjct: 3   FVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRMRM 60

Query: 67  INCDGSEVQSCGNGMRCVVRFL---------------TSRMKRKSFTFETIRGILVAKEN 111
            N DGSE   CGN +RCV ++                 S +KR   T   ++G +     
Sbjct: 61  FNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELT--VVKGAV----- 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRF---HIGPVNHLFLRNPFVVSMGNPHAI 168
               + VDMG      K +P        D D F    +   N  F  N  V+SMGNPH +
Sbjct: 114 --ECVGVDMGRADFAVKNVPFV-----CDEDEFIASELRADNRTF--NATVLSMGNPHCV 164

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            FV DD+  +++  +G  +  +P+F E VN+    +   +++ +R WERG G T ACG+ 
Sbjct: 165 VFV-DDVDAFNVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTG 223

Query: 229 ACASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           ACASV A+        +  + V++LGG L ++   +  + M G A + + G  ++
Sbjct: 224 ACASVAAAARNTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278


>gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
 gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
          Length = 335

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 25/258 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +++  + A +   T+  T +    D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116
            +    + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VAK++   S 
Sbjct: 61  TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLAS- 117

Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169
               G P    ++ P++ +     F  +  DR    + P  H  L+    V++ NPH I 
Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172

Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           FV +++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+
Sbjct: 173 FVSKEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232

Query: 228 AACASVVASGCLHKTNRA 245
              A+ +A    H    A
Sbjct: 233 GMSATTLAFILTHPQEAA 250


>gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
 gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
          Length = 326

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +AS+ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
 gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
          Length = 334

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-----I 116
           A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++  + +      
Sbjct: 65  AQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQATELAPGVLAF 124

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175
           +V++     D   +P    FD +  DR    PV  L     F  +++ NPH I FV    
Sbjct: 125 AVEISPVRFDKTALP----FDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFVSQQT 180

Query: 176 YHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
               L    G  L   +P FS+GVN++ A++   + L +RT+ERGVG T ACG+   A+ 
Sbjct: 181 IEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACGTGMSATS 240

Query: 234 VASGCLHKTNRA 245
           +A   LH  + A
Sbjct: 241 LAFALLHPASAA 252


>gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 284

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 132/284 (46%), Gaps = 15/284 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115
               A   I N DGS  + CGNG RCV  +L      +   F     +   A E  DG  
Sbjct: 63  DGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDR 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 238 LMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
 gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
          Length = 341

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 27/285 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTH-----FDQIMLIHDFQDA 58
           ++  K+ G GN   ++D       I+   +  L+    D  H      D I+ +      
Sbjct: 16  MELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLPETRG 75

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            V   +R+IN DGSE   CGNG+R V R+L+ +  +KSF   T+   L  ++  +    +
Sbjct: 76  DVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANE----L 131

Query: 119 DMGEPILDWKLIPLARSFDKMD----RDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE- 172
             G      ++ P++ S D +     ++  H   +  L     F  V++ NPH I FV+ 
Sbjct: 132 APGVKTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKFSAVAVPNPHLISFVDH 191

Query: 173 DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + L   DL    + L   ++ +F +GVN+S   + S + + +RT+ERGVG T ACG+A  
Sbjct: 192 ETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACGTAMS 251

Query: 231 ASVVASGCLHKTN-----RAVSVKMLGGGL--LIEWHDNNHVFMT 268
           AS +    L KT+     + +SVK  GG +  ++   ++ + FM+
Sbjct: 252 ASSLMY-VLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMS 295


>gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101]
 gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101]
          Length = 272

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%)

Query: 8   FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53
           F+KM G GN  +VI+               + CH      A            D I+++ 
Sbjct: 3   FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108
             ++ + D  + IIN DGS    CGNG+RC  +++  +   K       T + ++ I + 
Sbjct: 51  --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108

Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            EN +  +I+V+MG      K IP A   +++   +  +G  N         + MG PH 
Sbjct: 109 IENDKVKTINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I F E++ Y  +    G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+
Sbjct: 164 IIF-EEEKYPIEC---GKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             CASV+A+  L   ++ V V + GG L +   D+  V M G A
Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262


>gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 204

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 15/208 (7%)

Query: 76  SCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
            CGNG RC  RF  L     ++     T  G +V     D  + V+MGEP  +   +P  
Sbjct: 2   QCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF- 60

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
              +K ++          +      VVSMGNPH +  V D++    + + G +L  H  F
Sbjct: 61  -RANKAEKTYIMRAAEQTILC---GVVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERF 115

Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV---VASGCLHKTNRAVSVKM 250
            E  N+   +V   E + LR +ERG G T ACGS ACA+V   +  G L +    V V++
Sbjct: 116 PERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEE---VRVEL 172

Query: 251 LGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
            GG L I W    H ++MTG A   ++G
Sbjct: 173 PGGRLDIAWKGPGHPLYMTGPAAHIYDG 200


>gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 270

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 124/274 (45%), Gaps = 24/274 (8%)

Query: 4   SMVDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S ++F KM G+GN  +++   D+   HD ++  A N          DQ ++  +  D   
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSHD-LSQLAKNMADRHTGIGCDQFIIYEEHDD--- 58

Query: 61  DAFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             F  +I  N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV
Sbjct: 59  --FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISV 116

Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++G    +   +P         RDR +       + L+    V +GNPH + F +  L  
Sbjct: 117 NVGSVSFNEAWMP--------SRDRIWEFAERYMIDLKETICVDIGNPHLVIFSK--LEP 166

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D    G  L    +F++GVN++ A V     + L  WE+GVGLT ACGS AC S  A  
Sbjct: 167 QDQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGL 225

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            L   +   +V    G L ++  +N ++ M G A
Sbjct: 226 KLGFIHSPSTVVFKHGNLTMK-EENGNIIMQGAA 258


>gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137]
 gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012]
          Length = 326

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017]
 gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027]
 gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467]
          Length = 326

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   V     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
 gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
          Length = 271

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 135/285 (47%), Gaps = 32/285 (11%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R    +D    D I  +     +   D ++LI +     VD 
Sbjct: 3   IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIEN--SDKVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG-SISVDM 120
             +  N DGS  + CGNG RC  RF   + +  K   FETI GI+ A E  DG ++ V +
Sbjct: 61  KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEA-EIMDGFNVKVQL 119

Query: 121 GEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            EP    +D+++  L         ++  +  +N            G PH +  V+DD+Y 
Sbjct: 120 TEPFDEKIDYEIEVLG--------EKLTVSSIN-----------TGVPHVVVEVKDDIYS 160

Query: 178 YDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           +D+  +G  +  H ++   G N++  +      L +RT+ERGV   T ACG+ + A+ + 
Sbjct: 161 FDVVKYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSII 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +      N  V ++   G +L  + ++  VF+ GEA+  + G L+
Sbjct: 221 AVKKGIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLN 265


>gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 284

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 134/285 (47%), Gaps = 17/285 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114
               A   I N DGS  + CGNG RCV  +L      + + F  ++      A E  DG 
Sbjct: 63  DGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGD 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   
Sbjct: 122 RYAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V
Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAV 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                 +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
 gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
          Length = 272

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%)

Query: 8   FAKMEGIGNKILVID--------------MRGCHDNITSDAINALSTDDNTHFDQIMLIH 53
           F+KM G GN  +VI+               + CH      A            D I+++ 
Sbjct: 3   FSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGA------------DGILIVR 50

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVA 108
             ++ + D  + IIN DGS    CGNG+RC  +++  +   K       T + ++ I + 
Sbjct: 51  --KNENCDIEMVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLE 108

Query: 109 KEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            EN +  +I+V+MG      K IP A   +++   +  +G  N         + MG PH 
Sbjct: 109 IENDKVKTINVNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEITS----LLMGVPHT 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           I F E++ Y  +    G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+
Sbjct: 164 IIF-EEEKYPIEC---GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGT 219

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             CASV+A+  L   ++ V V + GG L +   D+  V M G A
Sbjct: 220 GNCASVIAANKLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNA 262


>gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG]
 gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG]
          Length = 326

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      +  +
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +AS+ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E]
 gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii]
 gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22]
          Length = 270

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 120/268 (44%), Gaps = 16/268 (5%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      N++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYEENNDFYT--- 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN +RC+ + +     +++ T    +  L+        ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNVGNV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P   S DK+    +       L L+    V +GNPH I F    L   D    
Sbjct: 122 SFNETWMP---SRDKI----WKFAERYMLDLKEMLCVDIGNPHLIIF--SKLEPQDKTII 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS ACAS  A   L   +
Sbjct: 173 GQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLGFVH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
              +V    G L++   D N + M G A
Sbjct: 232 SPSTVVFEYGNLIMREEDGN-IIMQGAA 258


>gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
 gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
          Length = 333

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 23/268 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T++ + + +   TD         D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D    
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +  +R     V  L+    F  +++ NPH I FV
Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFV 176

Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             ++L    L   G  L + +P FS+GVN++   +     L ++T+ERGVG T ACG+  
Sbjct: 177 SMEELNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            A+ +A    H      N  +SV   GG
Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGG 264


>gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 267

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 132/286 (46%), Gaps = 33/286 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62
           F KME  GN  ++ D R    N     IN L+    + HF    D I+       +  D 
Sbjct: 3   FWKMEAAGNDFVIFDGR----NRKIREINKLAKKLCDRHFGIGADGILFCE--SSSIADM 56

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-----LVAKENRDGS 115
            +   N DGS  + CGNG+RC+ R++     + + + T ET  G+      V ++N+  S
Sbjct: 57  KMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQVSS 116

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG+   +W+         +   +R  I     +F R    V++G PH    VED +
Sbjct: 117 VQVKMGKA--EWE--------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVEDFM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L  +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C +   +  V 
Sbjct: 163 KDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVI 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L K +        GG + +E  D + V + G+A   + G +D+
Sbjct: 223 LQHLQKISGEAHFYTEGGDVFVEVKD-DVVMIYGKANFVFAGDIDV 267


>gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
 gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
          Length = 326

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G         P     +R    V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +AS+ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIASYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
 gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
          Length = 269

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 123/282 (43%), Gaps = 28/282 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R   +  N++  A N          DQ ++  +  +    
Sbjct: 3   SKINFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNN---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     +K  T       L+ +   +  ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHY 178
           +G    +   +P         RD+       ++  L+    V +GNPH + F    L   
Sbjct: 118 VGAVSFNETWMP--------SRDKIWAFAARYMIDLKETICVDVGNPHLVIF--SKLESQ 167

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236
           D    G  L    +F+ GVN++ A +     ++L  WERGVGLT ACGS AC S  A   
Sbjct: 168 DQKIVGETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLK 226

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            G +H  +  V       G L    +N ++ M G A    EG
Sbjct: 227 RGFIHSPSTVV----FKHGSLNMKEENGNIIMQGSATLIAEG 264


>gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B]
 gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A]
          Length = 326

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNTGGMVKTVVHETS 272


>gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
 gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
          Length = 326

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
 gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
          Length = 275

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 25/282 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D+R   D         ++   + HF    DQ++ I   +   V A 
Sbjct: 3   FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG
Sbjct: 60  YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P+ + + IPL+   + +            L L+   +    VSMGNPHA+  VE DL  
Sbjct: 120 LPVFEPERIPLSGFPNALGE--------YVLSLQGEVLCCGAVSMGNPHAV--VEVDLID 169

Query: 178 Y-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V  
Sbjct: 170 VAPVERIGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVL 229

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               +  R V V + GG L ++W      V ++G A+  ++G
Sbjct: 230 MQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 271


>gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 284

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 25/282 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D+R   D         ++   + HF    DQ++ I   +   V A 
Sbjct: 12  FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAA 68

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG
Sbjct: 69  YRIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMG 128

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDDLYH 177
            P+ + + IPL+   + +            L L+   +    VSMGNPHA+  VE DL  
Sbjct: 129 LPVFEPERIPLSGFPNALGE--------YVLSLQGEVLCCGAVSMGNPHAV--VEVDLID 178

Query: 178 Y-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V  
Sbjct: 179 VAPVERIGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVL 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               +  R V V + GG L ++W      V ++G A+  ++G
Sbjct: 239 MQRGRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280


>gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000]
          Length = 326

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---KITVKNAGGMVKTVVHETS 272


>gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76]
 gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031]
 gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302]
 gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342]
 gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF]
          Length = 326

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346]
          Length = 326

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G         P     +R    V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
 gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
          Length = 326

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046]
          Length = 320

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 22/207 (10%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI---- 116
           DA +R+IN DGSE   CGNG+RCV R++  ++       ET+   L  K  R+ SI    
Sbjct: 57  DAKMRVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVK--REASIFEQL 114

Query: 117 ---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAI---- 168
              SV++  PI  ++L+ L    +   + R  I P   + +  PF  +S+ NPH I    
Sbjct: 115 PTYSVEIS-PI-SFELVSLPMKVENRQQLRHEIIPAFSMDI--PFTAISVPNPHLIGIVD 170

Query: 169 -FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
             ++E+ L+   LA++ N  +++    +GVN+S  +  S + + +RT+ERGVG T ACG+
Sbjct: 171 HKYMENTLHQEQLAAYLN--SENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGT 228

Query: 228 AACAS-VVASGCLHKTNRAVSVKMLGG 253
           A  AS ++AS     TN  V+V   GG
Sbjct: 229 AMTASALIASIEGFITNSKVTVYNPGG 255


>gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12]
 gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12]
          Length = 284

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 19/279 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KM+G GN  +V+D+R   D         ++   + HF    DQ++ I   +   V A 
Sbjct: 12  FTKMQGAGNDFVVLDLR---DGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAA 68

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDM 120
            RI N DGS  Q CGNG RCV  +L     +  + F  ++ ++   V    +D   +V+M
Sbjct: 69  YRIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKD-EYAVEM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179
           G P+ + + IPL+  F     +  ++  +    LR    VSMGNPHA+  VE DL     
Sbjct: 128 GLPVFEPERIPLS-GFPNACAE--YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V     
Sbjct: 182 VERIGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQR 241

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            +  R V V + GG L ++W      V ++G A+  ++G
Sbjct: 242 GRVGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 280


>gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
 gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
          Length = 283

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 132/284 (46%), Gaps = 15/284 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAARLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DGS 115
           +   A   I N DGS  + CGNG RCV  +L      +   F         +  R   G+
Sbjct: 63  SEAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGT 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +V MG P  +   IPLA  F    R+ + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YAVAMGVPHFEPTQIPLA-GFAHA-REEYAL-PVHGETVRF-GAVSMGNPHAVIEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V 
Sbjct: 178 DAAPVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGE 281


>gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
 gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
          Length = 335

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 25/258 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A +   T+  T +    D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDAPG 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSI 116
            +    + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VAK++   S 
Sbjct: 61  TA--GKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLAS- 117

Query: 117 SVDMGEPILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIF 169
               G P    ++ P++ +     F  +  DR    + P  H  L+    V++ NPH I 
Sbjct: 118 ----GVPAYSVEISPVSFAAADLPFANLGGDRIVDTVLPAIHPSLKF-TAVAVPNPHLIA 172

Query: 170 FV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           FV +++L   DL   G +L A +P F EGVN++ A +   ++L  RT+ERGVG T ACG+
Sbjct: 173 FVSKEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGT 232

Query: 228 AACASVVASGCLHKTNRA 245
              A+ +A    H    A
Sbjct: 233 GMSATTLAFILTHPQEAA 250


>gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244]
          Length = 326

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G         P     +R    V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIS-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
 gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
          Length = 334

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M++  K+ G  N   ++D       ++   +   +   T+  T      D +++++    
Sbjct: 1   MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           ++    +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +  +D + +
Sbjct: 61  SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  FD + ++R     +  ++    F  +++ NPH I FV
Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            + ++    L   G  L + +P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL--LIEWHDNNH-VFMTGEAKKEWEGKL--- 279
            A+ +A    H      N  +SV   GG +  ++ +  N++ + + G A      KL   
Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++ G +    I+K  +  AY
Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317


>gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141]
          Length = 326

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      +  +
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
 gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
          Length = 287

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 133/288 (46%), Gaps = 42/288 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+KM GIGN   +ID         +D   A     + +F    D ++ +        D  
Sbjct: 9   FSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFV--VPSDVADIG 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            R+ N DGSE + CGNG+RC   F+     +++++ T ET  GI   +      I+V+ G
Sbjct: 67  YRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIE------ITVEDG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---------------VSMGNPH 166
           EP+L +K+         M +  F +  +  +   + FV               V++GNPH
Sbjct: 121 EPVL-FKV--------NMGKSTFKVPEIPMIADTDEFVDGDLDVIDTTFKATCVNVGNPH 171

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           AI FV++      +  +G  +  H +F E +N+    V S     +RTWERG G+T ACG
Sbjct: 172 AILFVDNVDDID-IDKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACG 230

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEA 271
           + A ++ +A   L   ++ V + + GG L  E ++ +     FM G A
Sbjct: 231 TGATSTALAGVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPA 278


>gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043]
 gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312]
 gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645]
 gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630]
          Length = 326

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      +  +
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APSL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF------LRNPF---VVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G V  L       L N      V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLG-VQTLIDEIVPALSNTIRFTAVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
          Length = 284

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114
               A   I N DGS  + CGNG RCV  +L      + + F  ++      A E  DG 
Sbjct: 63  QGAVAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAH-AVERLDGD 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   
Sbjct: 122 RYAVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V
Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAV 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                 +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5]
 gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5]
          Length = 270

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 121/273 (44%), Gaps = 22/273 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHY 178
           +G    +   +P         RD+       ++  L+    V +GNPH I F    L   
Sbjct: 118 VGSVSFNEAWMP--------SRDKVWAFAERYMIDLKETICVDIGNPHLIIF--SKLEPQ 167

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D    G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   
Sbjct: 168 DQKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLK 226

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L   +   ++    G L ++  +N ++ M G A
Sbjct: 227 LGFIHSPSTIVFKHGNLTMK-EENGNIIMQGAA 258


>gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGIGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114
               A   I N DGS  + CGNG RCV  +L      + + F  ++      A E  DG 
Sbjct: 63  EGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGD 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   
Sbjct: 122 RYAVAMGVPQFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+  
Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAA 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                 +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341]
 gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62]
          Length = 326

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 31/221 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++      + ++
Sbjct: 65  NARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQ------APNL 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV 171
            E +  +++     SF+ +     H+G         P     +R    V++ NPH + FV
Sbjct: 119 AEEVATYQVEISPVSFEAVTIP-MHLGVQTLIDEIVPALSKTIRFT-AVAVPNPHLVAFV 176

Query: 172 EDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + +  +      +A++ N   ++P F EG+N+S   +     L +RT+ERGVG T+ACG+
Sbjct: 177 DHETLNGPEFERIATYVN--NENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGT 234

Query: 228 AACAS-----VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A CAS     ++  G  ++    ++VK  GG +    H+ +
Sbjct: 235 AMCASSLLYTLLKDGVFYE---EITVKNAGGMVKTVVHETS 272


>gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a]
 gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia
           K279a]
          Length = 283

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 129/282 (45%), Gaps = 13/282 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           S  + F+KM G GN  +VID+R      T + + A   D +T    DQI+ I   +    
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTAPPTPE-LAAQLADRHTGVGCDQILTIEAPRAEGS 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSIS 117
            A  RI N DGS  + CGNG RC+  +L      +   F  I   L + E     DG  +
Sbjct: 65  VASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRF-VIDSPLASHEVEVLGDGQFA 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P  +   +PL   F     +  ++ P+    +R    VSMGNPHA+  V   +  
Sbjct: 124 VTMGVPAFEPANVPLV-GFAHAREE--YLLPLQGESVRF-AAVSMGNPHAVIEV-GLIDA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G LL +H  F   VN+  A+V       LR  ERGVG T ACGS ACA+ V   
Sbjct: 179 APVERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLM 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
              +  R   + + GG L I+W  D   V M G     +EG+
Sbjct: 239 QRGRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56]
          Length = 138

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR--GIL--VAKENRDGSISV 118
           FI I+N DGS+ Q+CG     + R    R  R        R  GIL  V  E RD  +  
Sbjct: 62  FIDILNSDGSKAQACGK-RHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRD-DLPS 119

Query: 119 DMGEPILDWKLIPLARSF 136
           DMG+P+ DW   P    F
Sbjct: 120 DMGKPVFDWGQDPALGRF 137


>gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
 gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
          Length = 327

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 121/271 (44%), Gaps = 18/271 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62
           ++  K  G GN   +ID      N T +    L+    D +T      ++   +    DA
Sbjct: 3   IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKADA 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GSIS 117
            +R+ N DGSE   CGNG+RCV R++   +  K    ET++  L  K+  D      +  
Sbjct: 63  RMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPTYL 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176
           V++     D K +PL      +D+D      V+ +     F  +++ NPH +  VE +  
Sbjct: 123 VEISPVSFDLKDLPLV-----LDKDTIINEKVSGISEELAFTALAVPNPHFVSIVEKEQI 177

Query: 177 HYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
             DL    +     P   F +GVN+S  +      + +RT+ERGVG T ACG+A  AS +
Sbjct: 178 TSDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSASTL 237

Query: 235 AS--GCLHKTNRAVSVKMLGGGLLIEWHDNN 263
            +    L+K    V V   GG +    H+ N
Sbjct: 238 VTCMNGLNKIEEPVEVYNNGGKVRCVVHEKN 268


>gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519]
 gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii]
          Length = 281

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 135/281 (48%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM+G GN  IL  ++ G + + +  A            D +M     +  S D  +  
Sbjct: 3   FWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACE--KSTSCDIKMVY 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSISVDM 120
            N DGS+   CGNG+RC  +F+     + + SF  E         L+ + +    + V+M
Sbjct: 61  YNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+ KLIP    + +   +   I   +  FL +   V +G PH + F EDD+   +L
Sbjct: 121 GLPTLEPKLIPALTDYTEFINEEIVIE--DRKFLAS--AVLIGVPHLVIF-EDDISLQEL 175

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
             +G+ L ++  +F + +N++  ++    ++ ++T+ERG G T ACG+   +S   +  L
Sbjct: 176 DYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIANKL 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              N  V V   GG + IE      ++MTG A+K  +G++D
Sbjct: 236 GLVNDKVKVSSPGGEVEIEIL-KEKLYMTGPAQKICDGRVD 275


>gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 284

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 134/285 (47%), Gaps = 17/285 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R   D          +   + HF    DQI+ I   + 
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG- 114
               A   I N DGS  + CGNG RCV  +L      + + F  ++      A E  DG 
Sbjct: 63  EGAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAH-AVERLDGD 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             +V MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   
Sbjct: 122 RYAVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GR 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V
Sbjct: 177 VDAAPVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAV 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                 +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 237 VLMQRGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15]
 gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15]
          Length = 266

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 100/217 (46%), Gaps = 21/217 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123
           N DGS    CGNG+RC  R++   +RM  + F  ET+ G   +   +      SVDMG P
Sbjct: 56  NKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVP 115

Query: 124 ILDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
               + I  A+S+  +      IG     +  LFL        G  H + FVE+      
Sbjct: 116 DDSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEI- 165

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGC 238
               G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS  VA   
Sbjct: 166 WKKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKET 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
              +   V V +  G L+I   D   + M G A  EW
Sbjct: 226 GKISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260


>gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980]
 gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980]
          Length = 266

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 119/276 (43%), Gaps = 30/276 (10%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L   +    D ++ +        D    I  N
Sbjct: 5   KYNGCGNDFILLDYT--EDTNYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124
            DGS    CGNG+RC  R++   +RM  + F  ET+ G   +   +      SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              + I  A+S+  +      IG     +  LFL        G  H + FVE+       
Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEV-W 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS  VA    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
             +   V V +  G L+I   D   + M G A  EW
Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260


>gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118]
          Length = 334

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 26/289 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +   T+  T      D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN---RD 113
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L V KEN   +D
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
             + SV++     + + +P    F  +  DR     V  L+    F  +++ NPH I FV
Sbjct: 121 VPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            ++ +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271
            A+ +A    H     T+  + V   GG +  + H DNN   + +TG A
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285


>gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3]
 gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3]
          Length = 318

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 23/246 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114
           D   D   RI N DGSE + CGNG+RC  +++  R   K      ++  G+ +++   + 
Sbjct: 70  DYDADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISEMEFNE 129

Query: 115 S-------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNP-------FV 159
           S       + V MG P    K IP+       D +  ++  PVN   L+          V
Sbjct: 130 SNNEVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEALKLSV 189

Query: 160 VSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRT 214
            ++GNPH +  +++     +    +L   G  +  H  F E +N+    + + + + + T
Sbjct: 190 ANVGNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKEIQIIT 249

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKK 273
           WERG G T ACG+   +SV     L KT   V   + GG L IE  +N N ++M G A+ 
Sbjct: 250 WERGAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMKGGAEI 309

Query: 274 EWEGKL 279
            ++G L
Sbjct: 310 SYDGIL 315


>gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
 gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
          Length = 272

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 32/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSD---AINALSTDD--NTHFDQIMLIHDFQDA 58
           + F K++G GN  ++ID    HD   I  D   A  AL  D       D ++ +     A
Sbjct: 3   IAFTKLQGNGNDFVLIDE---HDGEVIPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGIL---VAKENRDG 114
             D  +R++  D SE   CGNG+RC+ ++   +   ++S + ET  GI+       + + 
Sbjct: 60  --DVRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEF 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           + ++ M  P  +   IP A + +  +  R F +           +  + G PHA+ FV++
Sbjct: 118 TATITMPAPAFERSAIPAAGNGEYKEEIRNFTV-----------YAANTGVPHAVVFVKE 166

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
            +   D+A+ G  +  HP F EG N++       +++ +RT+ERGV G T +CG+ A AS
Sbjct: 167 -IGAVDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATAS 225

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +  L K    V V+  GG L+I + +   V M G A+  + G +
Sbjct: 226 AAVAHHLGKVGDTVRVETKGGPLVIRFGET--VTMEGPAETVFSGVI 270


>gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
 gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
          Length = 334

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 141/289 (48%), Gaps = 26/289 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +   T+  T      D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN---RD 113
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L V KEN   +D
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
             + SV++     + + +P    F  +  DR     V  L+    F  +++ NPH I FV
Sbjct: 121 VPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            ++ +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271
            A+ +A    H     T+  + V   GG +  + H DNN   + +TG A
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285


>gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
 gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
          Length = 269

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 28/277 (10%)

Query: 3   SSMVDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           SS ++F KM G+GN  ++I   D+ G +D ++  A +          DQ  +I++ Q+ S
Sbjct: 2   SSKINFVKMHGLGNDFVIINKKDLTGTYD-LSQLAKSMAKRHLGIGCDQ-FIIYEEQNDS 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            +  I   N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV+
Sbjct: 60  YEMIIY--NIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +G    +   +P   S DK+    +R+ I       L+    V +GNPH + F + +L  
Sbjct: 118 VGGVSFNESWMP---SRDKIWEFAERYMID------LKETICVDVGNPHLVIFSKLELQ- 167

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
            D    G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A  
Sbjct: 168 -DQKIVGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGL 225

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             G +H     V       G LI   +N ++ M G A
Sbjct: 226 KLGFIHSPCEVV----FKHGSLIMKEENGNIIMQGPA 258


>gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
 gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
          Length = 281

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 30/287 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + FAKM G GN  ++ID          +    +    + +F    D ++ +   + A  D
Sbjct: 3   IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGI--LVAKENRDG-SIS 117
           A  R  N DGSE + CGNG+RC  R++       S    ET+ GI  L   +N +G  + 
Sbjct: 61  AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120

Query: 118 VDMGEPILDWKLIPLARSF----DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           VDMG P      IP          K+D   F I           + V+ G PHA+ FVED
Sbjct: 121 VDMGTPKFSKDEIPTKEDVWGKEIKIDNRSFEI-----------YAVNTGVPHAVIFVED 169

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
             + +D+   G  +    +F EG N++  +        +RT+ERGV   T +CG+ + A 
Sbjct: 170 --FDFDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAV 226

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +  L   +  V +   GG L +E+ +    ++ G A +  +GK+
Sbjct: 227 AAVARKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKI 272


>gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246]
 gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246]
          Length = 270

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 30/277 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +    +++  T       L+   N + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +G    +   +P   S DK+    +R+ I       L+    V +GNPH + F    L  
Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKEIICVDIGNPHVVIF--SKLEP 166

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
            D    G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A  
Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGL 225

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             G +H  +  V       G L    +N ++ M G A
Sbjct: 226 KRGFIHSPSTIV----FKHGNLTMKEENGNIIMQGAA 258


>gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
 gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
          Length = 266

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 118/276 (42%), Gaps = 30/276 (10%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L   +    D ++ +        D    I  N
Sbjct: 5   KYNGCGNDFILLDYT--EDTDYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124
            DGS    CGNG+RC  R++   +RM  + F  ET+ G   +          SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPD 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              + I  A+S+  +      IG     +  LFL        G  H + FVE+       
Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENSREEV-W 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS  VA    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
             +   V V +  G L+I   D   + M G A  EW
Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260


>gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
 gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
          Length = 280

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 133/293 (45%), Gaps = 34/293 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQD 57
           + + F KM G GN  +VID     +N   +   A       H       D ++ +     
Sbjct: 2   TKIKFTKMHGNGNDFIVIDE---FENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL-VAKENRDG 114
            S+   +RI N DGSE + CGNG+RC V++      M       ET  GIL V     DG
Sbjct: 59  TSLH--MRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDG 116

Query: 115 S--ISVDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              + V MG+P+ D K IP A   +F       + +  VN            G PHA+ F
Sbjct: 117 KTLVKVSMGKPLFDPKKIPAAGLNNFINKPLHGYEVTAVN-----------TGVPHAVIF 165

Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           V DD+   DL      +      F +G+N++  +     +L +RT+ERGV G T +CG+ 
Sbjct: 166 V-DDVNAVDLMKVAPEIRYDLKTFPKGINVNFVQREG-HNLRVRTYERGVEGETLSCGTG 223

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + AS   +  L  T    +V   GG L I +  ++  +M G A+  +EG++D+
Sbjct: 224 SVASAAVARYLGYTRDETTVYTAGGQLNISFV-SDIAYMEGPAETVYEGEIDV 275


>gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2]
 gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2]
          Length = 270

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 123/272 (45%), Gaps = 20/272 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVD 61
           S ++F KM G+GN  +V++ R    +     +     D +T    DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDD---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +G+   +   +P   S DK+    + +     + L+    V +GNPH + F    L   D
Sbjct: 118 VGKVSFNEVWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQD 168

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L
Sbjct: 169 QKIVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKL 227

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
              +   +V    G L ++  +N ++ M G A
Sbjct: 228 GFIHSPSTVVFKYGSLTMK-EENGNIIMQGAA 258


>gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
 gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
          Length = 333

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 23/268 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV   K+ G  N   ++D     + +  + + + +   TD         D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D    
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +   R     V  L+    F  +++ NPH I FV
Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFV 176

Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             ++L    L   G  L + +P FS+GVN++   +     L ++T+ERGVG T ACG+  
Sbjct: 177 SMEELNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            A+ +A    H      N  +SV   GG
Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGG 264


>gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5]
 gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5]
          Length = 270

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 28/276 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +G    +   +P        +RD+ +       + L+    V +GNPH + F    L   
Sbjct: 118 VGSVSFNEAWMP--------NRDKVWEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQ 167

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-- 236
           D    G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   
Sbjct: 168 DQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLK 226

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            G +H    + S  +   G L    +N ++ M G A
Sbjct: 227 RGFIH----SPSTIVFKHGNLTMKEENGNIIMQGAA 258


>gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
 gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
          Length = 334

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 28/290 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D     +++T   + A +   T+  T      D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSI 116
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L V KE      
Sbjct: 61  KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEE----- 115

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFF 170
           +   G P    ++ P+     A  F  +  +R     V  ++    F  +++ NPH I F
Sbjct: 116 NFAKGVPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINF 175

Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V ++ +    L + G  L   +P F++GVN++ A++     L +RT+ERGVG T ACG+ 
Sbjct: 176 VNQEQIAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEA 271
             A+ +A    H      N  + V   GG +  + H ++  +   +TG A
Sbjct: 236 MSATSLALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNA 285


>gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
          Length = 283

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 132/284 (46%), Gaps = 15/284 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F KM G GN  +V+D+R        DA+ A    D  HF    DQI+ I   + 
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLR--DGTPPPDAVLAARLADR-HFGVGCDQILTIEAPRS 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDG-S 115
               A   I N DGS  + CGNG RCV  +L          F     +   A E  D  +
Sbjct: 63  EDAVAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAET 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            SV MG P  +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +
Sbjct: 123 YSVAMGVPQFEPAQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVLEV-GRV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G LL ++  F   VN+  A+V     + LR +ERGVG T ACGS ACA+   
Sbjct: 178 DAAPVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAV 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
                +  R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 238 LMQRGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGE 281


>gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
 gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
          Length = 270

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%), Gaps = 30/277 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHND---- 58

Query: 62  AFIRII--NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            F  +I  N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV+
Sbjct: 59  -FYEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVN 117

Query: 120 MGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +G    +   +P   S DK+    +R+ I       L+    V +GNPH + F    L  
Sbjct: 118 VGSVSFNEAWMP---SRDKVWEFAERYMID------LKETICVDIGNPHVVIF--SKLEP 166

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS- 236
            D    G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A  
Sbjct: 167 QDQKIVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGL 225

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             G +H  +  V       G L    +N ++ M G A
Sbjct: 226 KRGFIHSPSTIV----FKHGNLTMKEENGNIIMQGAA 258


>gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
 gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
          Length = 266

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 118/276 (42%), Gaps = 30/276 (10%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L   +    D ++ +        D    I  N
Sbjct: 5   KYNGCGNDFILLDYT--EDTDYSQLAASLCAKEKYDTDGLIAV------KTDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPI 124
            DGS    CGNG+RC  R++   +RM  + F  ET+ G   +          SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPD 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              + I  A+S+  +      IG     +  LFL        G  H + FVE+       
Sbjct: 117 DSPEKIKAAQSY-PIKNQEIEIGGEKVTITSLFL--------GTIHTVVFVENAREEV-W 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASGCL 239
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS  VA    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
             +   V V +  G L+I   D   + M G A  EW
Sbjct: 227 KISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260


>gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS]
 gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS]
          Length = 300

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 24/233 (10%)

Query: 55  FQDA-SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKEN 111
           FQ++ +VD  +R+ N DGSE + CGNG+RC+ RF   ++ +     ET++G+  +V ++N
Sbjct: 29  FQNSDNVDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQNLVFIETLKGVSRVVNEKN 88

Query: 112 RDGSISV---DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167
               ++    ++    L+ K IP+   F+ + +      P++ L  +  F  VSM NPH 
Sbjct: 89  IHPGVATYKAELNTISLNTKDIPINVHFESLIKQ-----PLSTLSNKLTFTAVSMPNPHI 143

Query: 168 IFFVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           +  V D++   +L   G    +   +F  GVN++  +V    ++ +RT+ERGVGLT +CG
Sbjct: 144 VAMV-DNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEAAIYVRTYERGVGLTNSCG 202

Query: 227 SA-ACASVVASGCLHKT---NRAVSVKMLGGGLLIEWHDNN----HVFMTGEA 271
           S  + AS+VA  CL +    ++ + V   GG +  E   NN     VF++G A
Sbjct: 203 SGMSSASLVA--CLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHHYSVFLSGNA 253


>gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
 gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
          Length = 334

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 36/294 (12%)

Query: 5   MVDFAKMEGIGNKILVID------------MRGCHDNITSDAINALSTDDNTHFDQIMLI 52
           MV   K+ G  N   ++D            +R     IT+  I  L+  D      ++ I
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADG-----VLAI 55

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN 111
           +        A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L V KEN
Sbjct: 56  NKPVRKGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEN 115

Query: 112 ---RD-GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPH 166
              +D  + SV++     + + +P    F  +  DR     V  L+    F  +++ NPH
Sbjct: 116 DFAKDVPAYSVEISPVRFNKEALP----FTNLGHDRIIDNFVPELYPGLRFTSIAVPNPH 171

Query: 167 AIFFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
            I FV ++ +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T A
Sbjct: 172 LISFVNQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNA 231

Query: 225 CGSAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWH-DNNH--VFMTGEA 271
           CG+   A+ +A    H     T+  + V   GG +  + H DNN   + +TG A
Sbjct: 232 CGTGMSATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNA 285


>gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
 gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
          Length = 305

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 124/295 (42%), Gaps = 34/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM+G GN  + +D R  H  + +DA    +      F    D ++ I   Q +  D
Sbjct: 26  LEFTKMQGAGNDYIYLDCR--HSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDGD 83

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A + + N DGSE   CGNG+RCV  +L +   +K       R        R G      G
Sbjct: 84  ATMVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRAG 143

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------VSMGNPHAIFFV 171
                     + R F     D   +G      L  P V          VSMGNPH + F 
Sbjct: 144 ----------MGR-FSTRAADLPAVGLGAGPLLEVPLVAAGQSWQVSCVSMGNPHCVVFC 192

Query: 172 -EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT----AACG 226
            E       LA +G  +  HP F +G+N+   +  S  SL    WERG G T        
Sbjct: 193 NEAPPAGVQLADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGAC 252

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +AA   V+   C  +T   + V++ GG L +    ++ V +TG A+  ++G +++
Sbjct: 253 AAAVVGVLRGICPRET--PIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305


>gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
 gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
          Length = 284

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 12/269 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K +G+GN  LV+D       +    I AL            +++   +      +R
Sbjct: 7   ITMIKYQGLGNDYLVLDPNKNRVQLQGKKI-ALLCQRGFGLGADGILYGPIEIDGKMGVR 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK--ENRDGSISVDMG 121
           I N DGSE    GNG+R   ++L     +K + F+ +T+ G +  +   NR     V MG
Sbjct: 66  IFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRVKMG 125

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++  + F      H        +++GNPH I F+  +    +LA
Sbjct: 126 KASFISREIPVTGEVREVINESFTF----HNKEYKATCLTVGNPHCIIFM--NQVTPELA 179

Query: 182 -SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA+  L 
Sbjct: 180 KELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLG 239

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
                V+V   GG + I+  D++ ++MTG
Sbjct: 240 LVENRVNVNQPGGMIQIDIKDDDTIYMTG 268


>gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039]
 gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039]
          Length = 266

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L T +    D ++ +       +D    I  N
Sbjct: 5   KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123
            DGS    CGNG+RC  R++  +  M  + F  ET+ G   +   +      SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116

Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                I   +  P+     +++ D+  I     LFL        G  H + FVE+     
Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGDKVTI---TSLFL--------GTIHTVVFVENAREEV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237
                G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS VVA  
Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
               +   V V +  G L+I   D   + M G A  EW
Sbjct: 225 TGKISADQVVVHLEQGDLMISGEDT--IQMAGPAVHEW 260


>gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 270

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 127/278 (45%), Gaps = 19/278 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M G GN  +V+D+R   D          +   + HF    DQI+ I   +     A   I
Sbjct: 1   MHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGI 57

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGS  + CGNG RCV  +L      + + F  ++       +    G  +V MG P 
Sbjct: 58  WNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +    +   G
Sbjct: 118 FDPPQIPLA-GFAHA-RDEYAL-PVHGDTVRF-GAVSMGNPHAVVEV-GRVDAAPVERVG 172

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V      +  R
Sbjct: 173 TLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVER 232

Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEA----KKEWEG 277
            V V + GG L I W  D+  V M+G A      EW G
Sbjct: 233 DVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWNG 270


>gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
 gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
          Length = 286

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 17/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDA 62
           MV+F K  G+GN  +V D    +  +T   I  L  D N     D I+++    +     
Sbjct: 1   MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIR-LICDRNRGVGSDGILVLEKINNQEFK- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-----ILVAKENRDGS 115
            +RI N DGSE +  GNG+R + +++        K F   T+ G     ++  +  R  +
Sbjct: 59  -VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKT 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG+       IP+A    ++  +   I   N   L+    +S+GNPH +FFV D++
Sbjct: 118 IEVEMGKVTFRSSEIPVAGPEREVIDEELKI---NGEILKIT-CLSIGNPHCVFFV-DEI 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G  +  +P+F   +N+ + +V     +++R WERG G T A GS++CA+  A
Sbjct: 173 DEEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +      N  V V M GG L I  + +  V + G  ++ ++G+L
Sbjct: 233 AYRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGEL 276


>gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
 gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
          Length = 287

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 134/302 (44%), Gaps = 47/302 (15%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDF 55
           +++    F KM G GN  +V+D R     I+ +     A  A     +   D ++LI + 
Sbjct: 3   VENERTRFLKMTGSGNDFIVLDNRA--QGISPEQGRELARLACRRKLSVGADGLILIEN- 59

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRD 113
            D  VD   R  N DGSE + CGNG RC  RF  +   + +   +F T+ GI+ A E ++
Sbjct: 60  -DPEVDFRWRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEA-EIKE 117

Query: 114 GSISVDMGEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             + + M  P     D  +    RSF      R H              ++ G PH + F
Sbjct: 118 PRVKIRMTPPHGLEPDLNVEAEQRSF------RLHF-------------INTGVPHVVCF 158

Query: 171 VEDD--LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACG 226
           +E+D  L   ++  +G LL  H  F   G N++ A V     + +RT+ERGV   T ACG
Sbjct: 159 LENDRALEEMNVFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACG 218

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN---------NHVFMTGEAKKEWEG 277
           + + AS + +         V V+   G  L  + DN         + V++ G+AK  +E 
Sbjct: 219 TGSIASALVAAAKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEA 278

Query: 278 KL 279
           +L
Sbjct: 279 EL 280


>gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 268

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 102/220 (46%), Gaps = 19/220 (8%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120
           +RI N DGS+ +  GNG+R + R+L  +  +    F   T  GI+  +   +G  IS+ M
Sbjct: 57  VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVTCQVLDNGQRISIAM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+                +D     + P           VSMGNPH + FV D       
Sbjct: 117 GQAAFANTAAFTV----DVDGTPLQLHP-----------VSMGNPHCVVFV-DQPTETLA 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ +  +F +  N+   RV   ++L+++ WERGVG T + G+++CA+   S  L 
Sbjct: 161 RQLGPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                V+V M GG ++IE  D+ HV M G   +     LD
Sbjct: 221 LVGPRVAVNMAGGVIMIELDDDYHVLMQGPVCRVGLYSLD 260


>gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 332

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 38/298 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINA---LSTDDNTHF----DQIMLIHD 54
           + + F K+ G  N   ++D     +NI+S  DA  A   +   D TH     D I+ +  
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEE--ENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSK 59

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRD 113
             +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL V K +  
Sbjct: 60  SSEAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSL 119

Query: 114 G----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168
           G    +  V++     + K +P+    +K+         V  L     F  VS+ NPH I
Sbjct: 120 GFDIPTYQVEISPVNFNLKSLPMNLPVEKLINQV-----VPELDAELAFSAVSVPNPHLI 174

Query: 169 FFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
            FV+  +   D    LAS+ N   ++P F +GVN+S  +  S +++ +RT+ERGVG T A
Sbjct: 175 AFVDQAVLDSDKQEKLASYLN--GENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNA 232

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CG+A  A  +    L +    + + +        ++D   V +T  AK++ EG+L ++
Sbjct: 233 CGTAMSACSLIKKMLDRDVLEIPLNV--------YNDGGRVQVT--AKEDAEGELSLQ 280


>gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
 gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
          Length = 266

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L T +    D ++ +       +D    I  N
Sbjct: 5   KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123
            DGS    CGNG+RC  R++  +  M  + F  ET+ G   +   +      SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116

Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                I   +  P+     +++ D+  I     LFL        G  H + FVE+     
Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGDKVTI---TSLFL--------GTIHTVVFVENAREEV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237
                G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS VVA  
Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
               +   V V +  G L+I   D   + M G A  EW
Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260


>gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304]
 gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304]
          Length = 280

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 45/296 (15%)

Query: 6   VDFAKMEGIGNKILVID---------------MRG-CHDNITSDAINALSTDDNTHFDQI 49
           + F KM G GN  ++ID               +R  CH N    A            D  
Sbjct: 3   IAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGA------------DGA 50

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVA 108
           + +   Q A  D   R  N DGSE   CGNG+RC  R++       +    ET+ GIL  
Sbjct: 51  LFVQPSQKA--DVRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILEL 108

Query: 109 KENRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           +  R+    + VDMG+P    + IP A++ D    +  H G    ++  N      G PH
Sbjct: 109 EVKRENGWWVKVDMGKPKFGREEIP-AKT-DVWGYEVEHDGRKFRIYAAN-----TGVPH 161

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225
              FV  D   +D+      +    +F EG N++ A+V   +++ +RT+ERGV G T +C
Sbjct: 162 VAVFV--DSLDFDIVPLARKIRYSEIFPEGTNVNFAKVDG-DTITVRTYERGVEGETLSC 218

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           G+ + A    +  L  T   V V   GG L IE  ++   +MTG A + ++G L +
Sbjct: 219 GTGSVAVAAIANRLGLTGSKVDVVTKGGLLKIELTEDT-AYMTGGASRVFDGILRL 273


>gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
 gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
          Length = 266

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 116/276 (42%), Gaps = 27/276 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+I+           A    S + +   D I  +    D S   F+
Sbjct: 1   MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLERRADGSF--FL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDG---SISVDM 120
           R+ N DGSE +  GNG RCV  +L            T  G+   +  + DG    I   M
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179
           G P +  + I L             +G V         +V++GNPH + FV+ DD   + 
Sbjct: 119 GVPRVMRRAIELE-----------GVGVVEGA------MVNVGNPHYVLFVDTDDFGSHG 161

Query: 180 LA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +     G  +A  P+F  G N+   +V S + ++ R +ERG G T + G+  CAS  A+ 
Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAK 272
            L    R+++    GG   + W  N    M TG A+
Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAE 257


>gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8]
 gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8]
          Length = 275

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 18/223 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGIL---VAKENRDGSI 116
           D  +RI+  D SE + CGNG+RC+ ++       +++ T +T  G L   V  E  + ++
Sbjct: 61  DIRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++ MGEP    K IP     +  ++   F +  VN            G PHA+    DDL
Sbjct: 121 TIGMGEPKFKRKDIPATGKGEYHEQIGGFEVHAVN-----------TGVPHAVILT-DDL 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
              DLA+    +  HP F  G N++  + T  +S+ +RT+ERGV   T +CG+ A AS  
Sbjct: 169 GSIDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAA 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               L   N  V V+  GG L I +       M G A   + G
Sbjct: 229 VVHHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSG 271


>gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 151

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           VSMGNPHAI ++ DD+ H D+   G     H  F + VN     V    ++ +R WERG 
Sbjct: 24  VSMGNPHAIVYM-DDIDHLDIEKIGPAFENHVAFPDRVNTEFVEVIDEHTVKMRVWERGS 82

Query: 220 GLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWE 276
           G T ACG+ ACA  VAS        +  V+VK+LGG L I W+   N V+MTG A   ++
Sbjct: 83  GETLACGTGACAVAVASVLNGHVDGDSPVTVKLLGGDLQIFWNRQENLVYMTGPAATVFD 142

Query: 277 GKLDI 281
           G++D+
Sbjct: 143 GEIDV 147


>gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
 gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
          Length = 286

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 28/290 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA----LSTDDNTHF--DQIMLIHDF 55
           ++ ++ F K++G GN  ++ID       +  D + A    L  D       D ++ +   
Sbjct: 11  EAFVIPFVKIQGNGNDFILIDE--TDGEVIPDPMKAEFAALYCDRRFGIGADGVLFLSKS 68

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----E 110
             A++   +RI+  D SE + CGNG+RC+V++   +    ++   ET+ G L  +    E
Sbjct: 69  DKANIR--MRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNE 126

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           N +    +DMG+ + +   IP     + + +   +          + + V+ G PHA+ F
Sbjct: 127 NNEFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIF 176

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
           V D +    +      +  H  F  G N++   +T  + + +RT+ERGV   T +CG+ +
Sbjct: 177 V-DSVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGS 235

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            AS   +  L KT   V V  +GG L+I + + +  FM G A   + G++
Sbjct: 236 TASAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284


>gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis]
          Length = 198

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM G+GN  +V+D    +   + + I  L+ D +T   FDQ++++    D  +D  
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLA-DRHTGVGFDQMLVVEPPYDPELDFH 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MG
Sbjct: 60  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  + + +P   +     +  + +    H  L    VVSMGNPH +  V DD+   ++A
Sbjct: 120 EPDFEPQTVPFRAA---KAQKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIAR 203
             G +L  H  F  G   ++ R
Sbjct: 174 LLGPVLENHERFLSGQISALCR 195


>gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO]
 gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
 gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
          Length = 266

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L T +    D ++ +       +D    I  N
Sbjct: 5   KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDIDGLIAV------KIDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123
            DGS    CGNG+RC  R++  +  M  + F  ET+ G   +   +      SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116

Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                I   +  P+     +++ ++  I     LFL        G  H + FVE+     
Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGEKVTI---TSLFL--------GTIHTVVFVENAREEV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237
                G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS VVA  
Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
               +   V V +  G L+I   D   + M G A  EW
Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260


>gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 335

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 21/219 (9%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122
           + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VA++ +     +  G 
Sbjct: 65  MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119

Query: 123 PILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           P    ++ P++ +     F  +  DR    + P  H  L+    +++ NPH I FV  + 
Sbjct: 120 PAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSPEV 178

Query: 175 LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   A+ 
Sbjct: 179 LAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSATT 238

Query: 234 VASGCLHKTNRA---VSVKMLGGGLL--IEWHDNNHVFM 267
           +A    H    A   V+     GG++  I  HD  H ++
Sbjct: 239 LAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWI 277


>gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
 gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
          Length = 274

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 122/290 (42%), Gaps = 38/290 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA------- 58
           + F K+ G GN  ++ID           A   +  D   HF  +     F          
Sbjct: 3   IPFVKLHGNGNDFILID---------EYAGEKIPDDMKGHFAAVYCDRKFGIGGDGVLFL 53

Query: 59  --SVDAF-IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----E 110
             S D   +R+   D SE + CGNG+RC+ ++   +   +   T +T+ G ++ +    E
Sbjct: 54  LKSNDGIRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDE 113

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           + D    V+M  PI +   IP     D      FH      +     F V+ G PHA+ F
Sbjct: 114 DGDFMAEVEMTPPIYESPGIPAKGKGD------FH----EIINGYEVFAVNTGVPHAVIF 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
           V D L   DL      +     F  G N++   +T   S+ +RT+ERGV   T +CG+ A
Sbjct: 164 VRD-LDSLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            AS   +  L KT   V V+ +GG L I   D    FM G A   + G L
Sbjct: 223 TASAAIAYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGML 270


>gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1
 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 285

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 8/275 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K   +GN  LVI+ +     +T + I  +   +       +L+           +RI 
Sbjct: 3   FYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124
           N DGSE +  GNG+R   R+L     +  K F+ ET  GI+  A ++   ++ V+MG+  
Sbjct: 63  NPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMGKVS 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + IP+     ++ +++  +      F       ++GNPH +  + DD+      +FG
Sbjct: 123 FWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVARNFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            +   +P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L   + 
Sbjct: 178 PIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGLCDS 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + VKM GG +LI+  D+ H+ MT    K  +G+L
Sbjct: 238 KIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 272


>gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC
           100599]
          Length = 280

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 31/287 (10%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  +V+D R G  + +   A   N      +   D  ML+ +   A  D 
Sbjct: 6   IPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNIA--DF 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DGSE + CGNG RC+ RF           +FET+ GI  A+ N++   SV + 
Sbjct: 64  KMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQN---SVKVK 120

Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD- 179
            P +  + + L + ++       +H G V             G PH ++FVE+ +   D 
Sbjct: 121 FPDVPLQALKLNQPYEWDGPSGVYHYGVV-------------GVPHTVWFVENVIAIADD 167

Query: 180 -LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            L  +G ++      F  G N++       ++L +RT+ERGV   T ACGS + A+ + +
Sbjct: 168 QLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAAAIIA 227

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
           G L   +  V++   GG L I  H  ++    V++ G +    EG L
Sbjct: 228 GILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274


>gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii]
 gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii]
          Length = 289

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F +  G+GN  +V+D       +T   I  +  D +       ++        D  +RI 
Sbjct: 5   FFRGHGLGNDYVVMDPTELTFTLTPGKIRGIC-DRHWGLGSDGILALVPSKKADFGLRIY 63

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-----VAKENRDGSISVDM 120
           N DGSE +  GNG+R   R+L  T + K+++FT ET  G++     + +     + +V+M
Sbjct: 64  NPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVEM 123

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE--DDLYH 177
           G        +P   S D++ +      P+        F  VS+GNPH + F +  +    
Sbjct: 124 GRATFQPSALPCTLSVDELIQQ-----PIEAAGRALQFTGVSVGNPHCVIFKQAGETWTR 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L + G +L  HP+F +  N+ +A  T  + + +  WERG G T A GS++CA+  A+ 
Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            L      V+VKM GG L IE   +  + M G   +   G L 
Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGALS 281


>gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
 gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
          Length = 275

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 25/288 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F KM+G GN  + I+     DN   D         + HF    D ++++   + A   
Sbjct: 1   MNFYKMQGAGNDFVFIED---FDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELAH-- 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRD-GS 115
           A + IIN DGS    CGN +RC  +++          F+ ET   I+ I +  EN +   
Sbjct: 56  ARMVIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKY 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG P  +   IPL      ++++   I   +  +     +  +G PH I F  D  
Sbjct: 116 VRVYMGNPSYNGCDIPLNNLESLIEKE---IAVDDKKYKMTTLL--LGVPHTIIFESD-- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             Y++   G+ + K  +FSEG N++  ++     + + TWERG G T ACG+   ASVV 
Sbjct: 169 REYNVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVV 228

Query: 236 SGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  L   N  + + VK  GG L+IE    + V+M G A+  ++G+L +
Sbjct: 229 AKKLGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275


>gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654]
          Length = 156

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 14/151 (9%)

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178
           MG P   W  IPL++  D             HL L  +P  V MGNPHA+FFV DD+   
Sbjct: 1   MGHPQTMWDEIPLSKPMD-----------TAHLPLDCDPMAVGMGNPHAVFFV-DDVGAV 48

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+ + G  +   P+F +  N+  A V S + + +R WERG G+T ACGS ACA+ VA+  
Sbjct: 49  DVEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAE 108

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
              T R V +++ GG L ++W D+  V+MTG
Sbjct: 109 RGLTERKVRMEVDGGWLTLDWRDDG-VWMTG 138


>gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
 gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
          Length = 266

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 121/278 (43%), Gaps = 34/278 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII-N 68
           K  G GN  +++D     D   S    +L T +    D ++ +       +D    I  N
Sbjct: 5   KYNGCGNDFILLDY--AEDTDYSQLAASLCTKEKYDTDGLIAV------KIDPLEMIYYN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSISVDMGEP- 123
            DGS    CGNG+RC  R++  +  M  + F  ET+ G   +   +      SVDMG P 
Sbjct: 57  KDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPD 116

Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                I   +  P+     +++ ++  I     LFL        G  H + FVE+     
Sbjct: 117 DSPEKIKANQTYPIKNQEIEINGEKVTI---TSLFL--------GTIHTVVFVENAREEV 165

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS-VVASG 237
                G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS VVA  
Sbjct: 166 -WRKRGELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKE 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
               +   V V +  G L+I   D   + M G A  EW
Sbjct: 225 TGKISADQVVVHLEQGDLMISGED--AIQMAGPAVHEW 260


>gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
 gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
          Length = 333

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 25/269 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLI-HDFQ 56
           MV   K+ G  N   ++D       +T   + + +   TD         D ++++ H  +
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
             SV A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D   
Sbjct: 61  PGSV-AQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED--- 116

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFF 170
            +  G P    ++ P+     A  FD +  +R     V  L+    F  +++ NPH I F
Sbjct: 117 -LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISF 175

Query: 171 VE-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V  ++L    L   G  L + +  FS+GVN++   +     L ++T+ERGVG T ACG+ 
Sbjct: 176 VSMEELNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTG 235

Query: 229 ACASVVASGCLHKT----NRAVSVKMLGG 253
             A+ +A    H      N  +SV   GG
Sbjct: 236 MSATSLALALTHPDAASFNEPISVYNPGG 264


>gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang]
 gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang]
          Length = 335

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 21/219 (9%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122
           + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VA++ +     +  G 
Sbjct: 65  MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119

Query: 123 PILDWKLIPLARS-----FDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           P    ++ P++ +     F  +  DR    + P  H  L+    +++ NPH I FV  + 
Sbjct: 120 PAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSPEV 178

Query: 175 LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L   DL   G +L AK+P F EGVN++ A     ++L  RT+ERGVG T ACG+   A+ 
Sbjct: 179 LAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMSATT 238

Query: 234 VASGCLHKTNRA---VSVKMLGGGLL--IEWHDNNHVFM 267
           +A    H    A   V+     GG++  I  HD  H ++
Sbjct: 239 LAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWI 277


>gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500]
          Length = 343

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+    V S   +  R W
Sbjct: 212 NATLVSMGNPHCVVHLEN-VQDFPMDYYGEVIETHPIFPDKTNVEFVEVISSNQVRARVW 270

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274
           +RG G T ACG+ ACA VVA     KT+R  +V M GG L +EW +++ +V+ +G +   
Sbjct: 271 QRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHMDGGSLEVEWRNEDEYVYHSGPSTTT 330

Query: 275 WEGKL 279
           ++G +
Sbjct: 331 FQGTV 335


>gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
 gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
          Length = 260

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 132/283 (46%), Gaps = 33/283 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K  G+GN  ++ +     D    + +       +   D ++++   +  + + ++ 
Sbjct: 1   MEFEKYSGLGNDFIITE----KDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGI----LVAKENRDGSISV 118
             N DGS    CGNG+RC   +L +     K      +T+ GI    ++  E  +  +SV
Sbjct: 54  FYNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSV 113

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DM   I   ++    ++ + +DR   +I    + F         G  H + FV+ +  + 
Sbjct: 114 DMNAAINTTEI----KTIEAIDRTFKYI----YTF--------TGTDHVVIFVDKEELNE 157

Query: 179 DLAS-FG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           D  + +G N+     +F +G N++   V + E +D+ T+ERG GLT ACG+ A A    S
Sbjct: 158 DFVTKYGKNIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVS 217

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L KT   V V +LGG L IE  D   +FM G ++  ++G +
Sbjct: 218 NMLGKTGNKVKVNLLGGSLEIEIKDGT-IFMNGISEMIYKGSV 259


>gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
 gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
          Length = 327

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 24/274 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID        T +     AI     D     D I+     +    
Sbjct: 3   IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFT--MKSDKA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115
           DA +R+ N DGSE   CGNG+RCV R++      K    ET++  L  ++  D      +
Sbjct: 61  DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
             V++       + +PL  + + +  ++     +N L     F  +++ NPH I     D
Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEK-----INSLSDSLHFTALAVPNPHLIAVCSKD 175

Query: 175 LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
               DL    +     P  +F +GVN+S  +    ES+ +RT+ERGVG T ACG+A  AS
Sbjct: 176 DIQSDLQKNISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSAS 235

Query: 233 VVASGCLH---KTNRAVSVKMLGGGLLIEWHDNN 263
            + S CL    K  R V V   GG +    H++N
Sbjct: 236 TLVS-CLQGMNKLERPVDVYNNGGKVQCIAHESN 268


>gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
 gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
          Length = 330

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 26/258 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTH--FDQIMLIH 53
           M+ S ++  K+ G GN   ++D     + +T + +  L+      D   H   D ++ + 
Sbjct: 1   MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              + + D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+   
Sbjct: 61  AGHEGT-DGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADK 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNP 165
            +  V    P  D ++ P+  SFD  D    H+G        +  L     F  V++ NP
Sbjct: 120 LAEKV----PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSKAIKFSAVAVPNP 172

Query: 166 HAIFFVE-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H I FV+ + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T
Sbjct: 173 HLIAFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFT 232

Query: 223 AACGSAACASVVASGCLH 240
            ACG+A  AS +    LH
Sbjct: 233 NACGTAMSASSLMYVLLH 250


>gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 335

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 20/194 (10%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122
           + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VA++ +     +  G 
Sbjct: 65  MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFV-E 172
           P    ++ P+  SF   D    ++G         P  H  L+    +++ NPH I FV  
Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSP 176

Query: 173 DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           ++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   A
Sbjct: 177 EELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236

Query: 232 SVVASGCLHKTNRA 245
           + +A    H    A
Sbjct: 237 TTLAFILTHPEEAA 250


>gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 272

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST----DDNTHFDQIMLIHDFQDASVD 61
           V F KM G GN  ++ID R    + T D  N ++       +   D ++LI       VD
Sbjct: 4   VSFWKMSGSGNDFIIIDNRTLFIDKT-DFRNTVAKICKRSMSVGADGVILIE--PSNKVD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
                 N DGS  + CGNG RC  RF     +  K   FE++ GI+ A+     S+ V +
Sbjct: 61  FKWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKL 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  D KL         +D       P+  L L   F V+ G PH    V DD+Y++D+
Sbjct: 121 TRP-SDLKL--------NIDI------PLTDLTLNGSF-VNTGVPHIAIEV-DDIYNFDV 163

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVAS 236
             +G  +  H +FS +G N++  ++   +++ +RT+ERGV    L    GSAA A ++  
Sbjct: 164 KKYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILHK 223

Query: 237 GCLHKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
             + K+   V +   GG  L+I    +++V++ GEA+  ++G L  ++ K+
Sbjct: 224 KSILKS--PVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272


>gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
          Length = 267

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 130/293 (44%), Gaps = 47/293 (16%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62
           F KME  GN  ++ D R     I    INAL+    + HF    D I+   +   A +  
Sbjct: 3   FWKMEAAGNDFVIFDGR----EIEIKDINALAKKLCDRHFGVGADGILFCQESDTADIK- 57

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS- 115
            +   N DGS  + CGNG+RC+ RF+     + ++    ET  G+    L   EN   S 
Sbjct: 58  -MNYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHISQ 116

Query: 116 ISVDMGEPILDWK-------LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           + V+MG+   +W+       L    RSFD               F R    V++G PH  
Sbjct: 117 VKVEMGKA--EWEKGFQEETLEIEGRSFD---------------FYR----VTVGVPHIA 155

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             V++ +   +L  +G +L KHP F    N++  +V + + + ++TWERG G T  C + 
Sbjct: 156 ILVDEFMKDEELNYWGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATG 215

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +  V    L K    V     GG + ++  D + V + G+A   + G +D+
Sbjct: 216 CSSCGVILQRLQKIKGEVHFYTEGGDVFVQTQD-DFVTIYGKANLIFTGDMDV 267


>gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 285

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 10/276 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K   +GN  LVI+ +    ++T + I  +   +       +L+           +RI 
Sbjct: 3   FYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124
           N DGSE +  GNG+R   R+L     +    F+ ET+ G++  A ++   ++ V+MG+  
Sbjct: 63  NPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMGKVS 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA-SF 183
              + IP+     ++ +++  +      F       ++GNPH +  ++D   + D+A +F
Sbjct: 123 FWSRDIPVVGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILLDD--INADVARNF 176

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G +    P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L   +
Sbjct: 177 GPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGLCD 236

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + V+M GG +LI+  D+ H+ MTG   K  +G+L
Sbjct: 237 SEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGEL 272


>gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum]
          Length = 381

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 16/139 (11%)

Query: 159 VVSMGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
           +VSMGNPH + F++D           D+   D++  G  LAKH MF +  N+     T  
Sbjct: 243 LVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTKA 302

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNH- 264
                R WERG G T ACG+ ACA  VA+  + K+   + +S+ M GG LLI+W+ N + 
Sbjct: 303 NHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANENF 362

Query: 265 --VFMTGEAKKEWEGKLDI 281
             VF TG A   +   + I
Sbjct: 363 GKVFKTGPATSVFSSVIKI 381



 Score = 42.4 bits (98), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
           DQ++++ D  +A  D  + I N DGS+   CGNG+RC  +++
Sbjct: 71  DQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYI 112


>gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 270

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 143/291 (49%), Gaps = 39/291 (13%)

Query: 8   FAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60
           F KM+  GN  + +D   C  + I +    A+   D  HF    D ++LI   D  D  +
Sbjct: 3   FIKMQAAGNDYVYVD---CFKEKIENPGEIAIKVSDR-HFGVGSDGLILICPSDIADVKM 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI-LVAKENRDG--- 114
           D +    N DGS    CGNG RCV ++      +K K+FT ET  GI  +  E +DG   
Sbjct: 59  DMY----NADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGIKYIEIEEKDGVAH 114

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
            I+V+MG+  +  +  P   S +  +++   IG            V +GNPHA+++VE  
Sbjct: 115 YINVNMGKAFITSEF-PEKISINGEEKE--FIG------------VDVGNPHAVYYVETL 159

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D+L   +L + G    +H  F + VN     V   +++ +R WERG G T ACG+ ACA+
Sbjct: 160 DELKGMNLEAVGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAA 219

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             A+         V V +LGG L I    N+ ++M G A+  + G+++ ++
Sbjct: 220 AFATMKKGLCENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269


>gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 270

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAFIRI 66
           M G GN  +V+D+R   D          +   + HF    DQI+ I   +     A   I
Sbjct: 1   MHGAGNDFVVLDLR---DGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGI 57

Query: 67  INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123
            N DGS  + CGNG RCV  +L      + + F  ++      A E  DG   +V MG P
Sbjct: 58  WNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSP-ATAHAVERLDGDRYAVAMGVP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IPLA  F    RD + + PV+   +R    VSMGNPHA+  V   +    +   
Sbjct: 117 QFEPTQIPLA-GFAHA-RDEYAL-PVHGETVRF-GAVSMGNPHAVVEV-GRVDAAPVERV 171

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+        +  
Sbjct: 172 GALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVE 231

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           R V V + GG L I W  D   V M+G A   ++G+
Sbjct: 232 RDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 267


>gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
          Length = 309

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 47/315 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRG-------------CHDNITSDA--INALSTDDNTH 45
           M +  V F K  G GN  LV+D                C      D    +A   +++T 
Sbjct: 1   MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60

Query: 46  ---FDQIMLI---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
               D ++ +     F    V   + ++  DGS    CGNG R V  +   R   + F  
Sbjct: 61  RRGADGVLFLSVEERFNPTRV--VMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMI 118

Query: 100 ETIRGILVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
           +T  G   A  N D +  +++MGEP  D   +PLAR    +D       PV  L +    
Sbjct: 119 DTQAGTRRASVNADATAATIEMGEPTFDPARVPLARDEPLIDE------PVEGLTV---T 169

Query: 159 VVSMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--- 209
            V+ G PHA+ FV+      D +   DL +    +    +F EG N+++A V    S   
Sbjct: 170 AVNTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDG 229

Query: 210 ---LDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNH 264
              +D RT+ERGV G T +CG+ A A V A+  L   +   +V +  GG L +   D  H
Sbjct: 230 PALIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGH 289

Query: 265 VFMTGEAKKEWEGKL 279
             +TG   +E+EG L
Sbjct: 290 ATLTGPVAREYEGTL 304


>gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius
           CECT 5713]
          Length = 325

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 18/192 (9%)

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+    +  V 
Sbjct: 61  TDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV- 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNPHAIFFV 171
              P  D ++ P+  SFD  D    H+G        +  L     F  V++ NPH I FV
Sbjct: 120 ---PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFV 173

Query: 172 E-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           + + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T ACG+A
Sbjct: 174 DHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTA 233

Query: 229 ACASVVASGCLH 240
             AS +    LH
Sbjct: 234 MSASSLMYVLLH 245


>gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 325

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 18/192 (9%)

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+    +  V 
Sbjct: 61  TDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV- 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGP-------VNHLFLRNPF-VVSMGNPHAIFFV 171
              P  D ++ P+  SFD  D    H+G        +  L     F  V++ NPH I FV
Sbjct: 120 ---PAFDAEISPV--SFDAQDL-LMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFV 173

Query: 172 E-DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           + + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T ACG+A
Sbjct: 174 DHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTA 233

Query: 229 ACASVVASGCLH 240
             AS +    LH
Sbjct: 234 MSASSLMYVLLH 245


>gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
 gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
          Length = 335

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 20/194 (10%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122
           + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VA++ +     +  G 
Sbjct: 65  MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFVED 173
           P    ++ P+  SF   D    ++G         P  H  L+    +++ NPH I FV  
Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVSP 176

Query: 174 D-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   A
Sbjct: 177 EVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236

Query: 232 SVVASGCLHKTNRA 245
           + +A    H    A
Sbjct: 237 TTLAFILTHPEEAA 250


>gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W]
 gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei
           BD-II]
          Length = 335

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 20/194 (10%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKENRDGSISVDMGE 122
           + ++N DGS  + CGNG+R V R+L+ +  + +F   T    + VA++ +     +  G 
Sbjct: 65  MTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQ-----LAEGV 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG---------PVNHLFLRNPFVVSMGNPHAIFFVED 173
           P    ++ P+  SF   D    ++G         P  H  L+    +++ NPH I FV  
Sbjct: 120 PAYSVEISPV--SFAPQDLPFANLGVDRIVDTFLPAIHPSLKF-TAIAVPNPHLIAFVSP 176

Query: 174 D-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   A
Sbjct: 177 EVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMSA 236

Query: 232 SVVASGCLHKTNRA 245
           + +A    H    A
Sbjct: 237 TTLAFILTHPEEAA 250


>gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514]
 gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514]
          Length = 269

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 31/288 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G GN  +++D R     +  + A+           D IML+        D  
Sbjct: 2   VLEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWA 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGE 122
               N DGS  + CGNG RC  RF+       S FTFET  GI+ A    +  +++ + +
Sbjct: 62  WDFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQGE-RVTIGLTK 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P          R     ++    +G  P++ L        + G PHA+ FV D      L
Sbjct: 121 P----------RDLRLNEQVTLSVGAQPIHSL--------NTGVPHAVLFVPDADKAMVL 162

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            S G  + +H  F+ +G N++  +     ++ +RT+ERGV G T ACG+   AS + S  
Sbjct: 163 -SLGQEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAE 221

Query: 239 LHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281
           L+     + V++ GG LL + + +N   F    +TG A   +EGK+ I
Sbjct: 222 LNGFKSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269


>gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum]
          Length = 285

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 133/301 (44%), Gaps = 56/301 (18%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64
           DF K  G+GN  +V+ + G    +T   +  L  D N     D I+L+      +    +
Sbjct: 4   DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLC-DRNYGIGSDGILLL---GQPTPPFGL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RI N DGSE +  GNG+R   +FL      K  SF  +T  G     + V  + R  ++ 
Sbjct: 59  RIFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----------------VS 161
           VDMG             SF+  D        V  L   NP +                VS
Sbjct: 119 VDMGR-----------YSFNPSD--------VGILGRSNPMIEEVLRLEDGTEIRGSAVS 159

Query: 162 MGNPHAIFFVE---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           +GNPH +FFVE   +D  H      G ++  + +F + +N  + RV     +++R WERG
Sbjct: 160 VGNPHFVFFVEKIDEDFIHEK----GRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERG 215

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            G T A GS++CA+   +  L +    V V M GG L+IE  +N+ + M G  ++   G 
Sbjct: 216 AGYTLASGSSSCAAATIAVHLGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGH 275

Query: 279 L 279
           L
Sbjct: 276 L 276


>gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
 gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
          Length = 264

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 134/285 (47%), Gaps = 32/285 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +VID R    N+  + ++A+ T       D ++LI   + A  D  +
Sbjct: 3   IEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
              N DG     CGNG RC V F   +  R     + FE   G   A+     S+ + M 
Sbjct: 61  NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P              K  RD  H G  +  F      V  G+PHAI +V D+L   D+ 
Sbjct: 121 PP--------------KNFRDDLHAGAWSCHF------VDTGSPHAIAYV-DNLDQMDVF 159

Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           + G  +  +  +F EG N++   VT+ ++L +RT+ERGV   T ACG+   A+ + S  L
Sbjct: 160 TEGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRL 219

Query: 240 HK-TNRAVSVKMLGG-GLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
            K  +  V V +  G  L++ ++D  + +++ G A+  ++G + +
Sbjct: 220 GKVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264


>gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
 gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
          Length = 514

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 380 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498

Query: 275 WEGKL 279
           +EG +
Sbjct: 499 FEGSI 503


>gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism
           HF4000_APKG3D20]
          Length = 280

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 8/279 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH-DFQDASVDAFI 64
           ++F K   +GN  LV+D R   +++   +I  +  D N       ++H  F     D  +
Sbjct: 1   MNFDKYHALGNDYLVLDPRERFESLDERSIIRI-CDRNFGLGSDGILHGPFSSEKADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI+N DGSE +  GNG+R   R+L  + K   + FT ET+ GI+  + + D + I V+MG
Sbjct: 60  RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +      +IP+    +  +     I    +      +  ++GNPH +  + D++    + 
Sbjct: 120 QVSFRSDVIPVKVEGEAREVLNEPIEAAGNSL--KYYAATIGNPHCVIPM-DEVSESFVR 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HPMF    N+ + ++    +L +  WERG G T A GS++ A+   +  +  
Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  ++V M GG + +   D  +V M G A +     LD
Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLD 275


>gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
 gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
          Length = 1411

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 40/316 (12%)

Query: 2    QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS 59
            +   + F KM+  GN  +VI+ M     N    A+      +     D ++LI + + A 
Sbjct: 1100 EKQKITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA- 1158

Query: 60   VDAFIRIINCDGSEVQSCGNGMRCVVRFL--------TSRMKRKS-----FTFET---IR 103
             DA +R  N DG+E +  GN +RCV ++L          +  +K+      T ET   ++
Sbjct: 1159 -DAKMRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVK 1217

Query: 104  GILVAKEN-RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-----P 157
             +++ K+N +  S++VDMG+P+   + IP +     +    F+    N +  +      P
Sbjct: 1218 TLVLYKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAP 1277

Query: 158  FVVS----------MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
             +V+          +GNPH + F    +    +   G L   H +F E  N    RV   
Sbjct: 1278 LIVAGNEYRVTCINVGNPHCVVF-SKFVDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGP 1336

Query: 208  ESLDLRTWERGVGLTAACGSAACASVVAS--GCLHKTNRAVSVKMLGGGLLIEWHDNNHV 265
              L +RTWERG G T ACG+ ACA+ VAS        N+ ++VK+ GG L++++     V
Sbjct: 1337 NELKMRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYTGET-V 1395

Query: 266  FMTGEAKKEWEGKLDI 281
             +TG  K  ++G+++I
Sbjct: 1396 LLTGNTKMCYQGEVEI 1411


>gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
 gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
          Length = 234

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 105/238 (44%), Gaps = 37/238 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F KMEG+GN  + ++   C   +  D      T  + HF    D ++ I   ++   D  
Sbjct: 24  FTKMEGLGNDYIYLN---CLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG--DFT 78

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS----IS 117
           + + N DGS    CGNG+RCV +++   +  ++   T +T  G    + +  G     ++
Sbjct: 79  MEMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVREVT 138

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L     PL    + +                  + V MGNPH + F  +    
Sbjct: 139 VDMGEPKLS---PPLEVQGETV------------------YPVDMGNPHGVIFCPEP-EE 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            DL   G  L + P F    N+    V + + L +R WERG G T ACG+ ACA + A
Sbjct: 177 IDLEVRGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLAA 234


>gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
 gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
          Length = 479

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + L  +G ++  HP+F +  N+    V + + L +R W
Sbjct: 347 NSTLVSMGNPHCVLHLEN-VEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRDLLRVRVW 405

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  A   
Sbjct: 406 QRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFISCPAITV 465

Query: 275 WEGKL 279
           ++G +
Sbjct: 466 FQGTI 470


>gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785]
 gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785]
          Length = 333

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D ++ I+        A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L
Sbjct: 50  DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANL 109

Query: 107 -------VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
                  +AKE +  + +V++     +   +P    F  +  +R     +  ++    F 
Sbjct: 110 RVRKHDNLAKEVK--AFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFT 163

Query: 160 -VSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWE 216
            +++ NPH I F++ +    + L   G  L   +P F +GVN++ A++     L +RT+E
Sbjct: 164 SIAVPNPHLISFMDQNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYE 223

Query: 217 RGVGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266
           RGVG T ACG+   A+ +A  CL        N+++ V   GG +    H  NH +
Sbjct: 224 RGVGFTNACGTGMSATSLAF-CLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTY 277


>gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026]
          Length = 333

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 18/233 (7%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D ++ I+        A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L
Sbjct: 50  DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANL 109

Query: 107 VAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-V 160
             +++ +      + +V++     +   +P    F  +  +R     +  ++    F  +
Sbjct: 110 RVRKHDNLAKGVKAFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFTSI 165

Query: 161 SMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           ++ NPH I F++ +    + L   G  L   +P F +GVN++ A++     L +RT+ERG
Sbjct: 166 AVPNPHLISFMDQNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERG 225

Query: 219 VGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266
           VG T ACG+   A+ +A  CL        N++++V   GG +    H  NH +
Sbjct: 226 VGFTNACGTGMSATSLAF-CLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTY 277


>gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 262

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 42/290 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHF----DQIMLIHDFQDA 58
           ++ F KM   GN  +++D         +  D  +        HF    D ++L+    + 
Sbjct: 2   LIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLL--MPNE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           S DA + I N DGS  + CG+ +RCV   L  +  +K F  +T  G+     N D +I+V
Sbjct: 60  SCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTITV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDL 175
           ++G P +      L  ++  MD            F  +  +V +GN H I +V   +DD 
Sbjct: 120 NLGMPSM------LKSAYQVMD------------FTGD--LVEIGNQHFIVWVNSLKDDP 159

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233
           +      +G+ +  H  F++ VN+  A + +  ++ ++ WE+G G T ACG+ A A+V  
Sbjct: 160 H----LQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFS 215

Query: 234 -VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +A G L   N  V V M GG + I    N ++ ++GE  + ++G  + K
Sbjct: 216 GIAKGLL---NNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYNWK 261


>gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1]
 gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1]
          Length = 330

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 31/297 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID      N +       AI           D I+ + D      
Sbjct: 3   INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLD--SDRC 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI---- 116
           D  +R+ N DGSE   CGNG+RCV R++T    +   T ET++  L  K + + SI    
Sbjct: 61  DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADL--KISSEPSIFAEI 118

Query: 117 ---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
               V++   + + K +P+      +D+       V  +     F  V++ NPH I  VE
Sbjct: 119 PTFKVEISPVLFELKHLPM-----NIDKQTLIDEKVPEISAALTFTAVAVPNPHLISIVE 173

Query: 173 DD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           ++  L +   +   ++   + +F +GVN+S  +    + + +RT+ERGVG T ACG+A  
Sbjct: 174 NEHILSNEQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMS 233

Query: 231 ASVVASGCLHKTN---RAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDI 281
           AS + + CL   N   + + V   GG + +  H N+  F   + G A      KLD+
Sbjct: 234 ASTLVT-CLSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDL 289


>gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
 gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
          Length = 279

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 49/296 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-----DASV 60
           ++F KM G GN  ++ID              ++   DN   + + ++ D +     D ++
Sbjct: 1   MEFVKMHGNGNDFVLID-----------EFESVKVPDNRKSEFVRVVCDRRFGVGGDGAI 49

Query: 61  --------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE 110
                   DA     N DGS  + CGNG+RC  R++  R   K      ET+ G+L    
Sbjct: 50  FVQKSDIADAKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDV 109

Query: 111 NRDGS--ISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             D    I V+MG P    K +P  +       ++D  +F +           + V+ G 
Sbjct: 110 WFDEMWWIRVNMGRPKFG-KDVPALKDVWGEVFEIDGRKFEV-----------YAVNTGV 157

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223
           PHA+  +  D + +D       +    +F EG N++ A+V S  S+ +RT+ERGV   T 
Sbjct: 158 PHAV--IFVDDFDFDFYKVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETL 215

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +CG+ +CA  V    L   ++ V V+  GG L IE +D   ++M G A K +EG+L
Sbjct: 216 SCGTGSCAVAVVGNRLGILDKVVEVQTKGGILKIEVND--EIYMNGTAAKVFEGRL 269


>gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e]
 gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561]
 gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
 gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e]
 gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
          Length = 329

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 32/295 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56
           + + F K+ G  N   ++D  G      SDA  A   +   D  H     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
             D+  P    ++ P+  + + +      ++     V  L     F  VS+ NPH I FV
Sbjct: 120 GFDI--PTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+
Sbjct: 178 DQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGT 235

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A  A  +    L K      + +        ++D   V +T  AKK+  G + ++
Sbjct: 236 AMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGDISLQ 280


>gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum]
          Length = 351

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 217 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335

Query: 275 WEGKL 279
           +EG +
Sbjct: 336 FEGSI 340


>gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 268

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 19/213 (8%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120
           ++I+N DGSE +  GNG+R + R+L  +  +  + F   T  G +  +   DG  IS+ M
Sbjct: 57  VQILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVRCQVLDDGRRISIAM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G            R   ++D  R H+            +VSMGNPH + FV D       
Sbjct: 117 GMATFPEN----ERHSMEVDGMRLHLN-----------LVSMGNPHCVVFV-DQTTEALA 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  + +  +F    N+    V    +L ++ WERGVG T + G+++CA+   S  L 
Sbjct: 161 RKLGPTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
             +  V+V M GG + IE  ++NHV M G   K
Sbjct: 221 FVDDHVTVHMPGGQITIELDEDNHVLMKGPVCK 253


>gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
 gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
          Length = 301

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 119/259 (45%), Gaps = 29/259 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + ++F K+ G GN  + +DM         +   A        +   D ++++     A  
Sbjct: 29  TTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVE--PSAGA 86

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS-V 118
              +R+ N DGSE + CGNG RC+ RF   R +     TFET+ G++ A+   +GS + +
Sbjct: 87  HFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARV--EGSFAEI 144

Query: 119 DMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           D+GE     DW   PL      MD   F          R+ F+  +G PH + F  ++L 
Sbjct: 145 DLGEQSFAPDWIDRPL-----TMDGAAF----------RSCFLW-VGVPHLVLFAPEELS 188

Query: 177 HYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D    G    A   +F +G N++ AR      L   T+ERGV  LT +CG+ + A+ +
Sbjct: 189 RDDCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAAL 248

Query: 235 ASGCLHKTNRAVSVKMLGG 253
           ++G L   +  + V   GG
Sbjct: 249 SAGLLFGMDSPIEVHNPGG 267


>gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304]
 gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304]
          Length = 342

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 37/285 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57
           M+   K++G GN   ++D       +  + ++ L+       T      D I+ +     
Sbjct: 1   MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAV----T 56

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRK----SFTFETIRGILV 107
           AS    I +IN DGS+   CGNG+R V R+L          KR     SF   T+   L 
Sbjct: 57  ASPTPSIHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116

Query: 108 AKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VS 161
            +   +      + SV++     D + +P    F  + R+R     V  L     F  +S
Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLP----FTNLGRNRLINCSVPELLPDLRFTALS 172

Query: 162 MGNPHAIFFVEDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           + NPH + F+  D    DL +S GN L + +P F  GVN++ A +    +L +RT+ERGV
Sbjct: 173 VPNPHVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGV 232

Query: 220 GLTAACGSAACAS----VVASGCLHKTNRAVSVKMLGGGLLIEWH 260
           GLT ACG+   A+    V+    + + N+ ++V   GG +    H
Sbjct: 233 GLTNACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVH 277


>gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067]
          Length = 332

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 38/252 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITS--DAINA---LSTDDNTHF----DQIMLIHD 54
           + + F K+ G  N   ++D     +NI+S  DA  A   +   D TH     D I+ +  
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEE--ENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSK 59

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
             +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  
Sbjct: 60  SSEAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVK--KAS 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMG 163
           S+  D+  P    ++ P+    + +  +     PV  L   N  V           VS+ 
Sbjct: 118 SLGFDI--PTYQVEISPVNFKPESLPMNL----PVEKLI--NQVVPELDAELAFSAVSVP 169

Query: 164 NPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           NPH I FV+  +   D    LAS+ N   ++P F +GVN+S  +  S +++ +RT+ERGV
Sbjct: 170 NPHLIAFVDQAVLDSDKQEKLASYLN--GENPFFPDGVNVSFVKRLSDDAIYVRTFERGV 227

Query: 220 GLTAACGSAACA 231
           G T ACG+A  A
Sbjct: 228 GFTNACGTAMSA 239


>gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 284

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 126/273 (46%), Gaps = 10/273 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + ++ +  +K +G+GN  L++D +     +    I AL            +++   +   
Sbjct: 2   VMANTIIMSKYQGLGNDYLILDPKKNQVQLQGKKI-ALLCQRGFGLGADGVLYGPVEIDG 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK--ENRDGSI 116
              +RI N DGSE    GNG+R   ++L     +  K F  ET+ G +  +   +R    
Sbjct: 61  KLGVRIFNADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATEF 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V++G+P      IP++    ++ ++ F    V H        +++GNPH I F  D++ 
Sbjct: 121 KVNIGKPSFISSDIPVSGEVREVIKENF----VFHGKEYKATCLTVGNPHCIIFT-DNVS 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + + G  +     F E +NL I R     +L++  WERG G T A G+ +CA+  A+
Sbjct: 176 AEAVKNLGPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAAA 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
             L      ++V   GG + I+  ++  ++MTG
Sbjct: 236 YKLGLVESRINVNQPGGMIQIDMEEDETIYMTG 268


>gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
 gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
          Length = 279

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 28/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH------FDQIMLIHDFQDAS 59
           + F K++G GN  ++ID     D +  D   A       H       D ++ +     A 
Sbjct: 3   IQFTKLQGNGNDFILIDE--WDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFT-FETIRGIL---VAKENRDG 114
           +   +RI N DGSE + CGNG+RC  ++ L  R         ET  G+L      EN   
Sbjct: 61  LQ--MRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKT 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I V+MG+P+ D   IP A+   +      H   V+         V+ G PHA+ FV D 
Sbjct: 119 YIKVNMGKPLFDRVKIP-AQGHGEFINVPLHGYEVS--------AVNTGVPHAVVFV-DS 168

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
           L   DL     L+    +F++G N++  +   + +L +RT+ERGV G T +CG+ + A+ 
Sbjct: 169 LEDPDLMDAAPLIRFDKVFAKGANVNFVQ-RDMGNLRVRTYERGVEGETLSCGTGSVAAA 227

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +  L     +  VK  GG L I + +++  +M G A+  ++G+++
Sbjct: 228 AIARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273


>gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch
           sediment']
          Length = 274

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 122/281 (43%), Gaps = 28/281 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM G GN  +VID R  H +I    +               LI     +  D  +RI+
Sbjct: 6   FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVADFRMRIL 65

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVDMGEPIL 125
           N DGSE + CGNG RCV RF     +      FET+ GI+ A    DGS + + +  P  
Sbjct: 66  NADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWV--DGSKVKLQISRP-- 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I L +S +        +    H+       ++ G PH + F   DL    + + G 
Sbjct: 122 --QGIRLHQSIE--------VDGAAHVV----HSINTGVPHVVLF-STDLEAVPVRTLGR 166

Query: 186 LLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +  HP F   G N++ A      +L +RT+ERGV   T ACG+   AS + +  L    
Sbjct: 167 TIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLVA 226

Query: 244 RAVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKL 279
             V V++  G +L      N      VF  GE +  ++G+L
Sbjct: 227 SPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267


>gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
 gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
          Length = 289

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 43/288 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------NTHF----DQIMLIHDFQD 57
           F K+ G GN  +VI       N  +  IN  S  +      + HF    D ++ I   Q+
Sbjct: 13  FTKISGTGNDFIVI-------NDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QN 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
           A  D      N DGS  + CGNG RC  R++ S+  +   SF   T  G++  + +    
Sbjct: 64  APTDIQWHFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRL 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V + +P                 R ++ I  +   +L +   ++ G PHA+  V  D+
Sbjct: 124 IGVQLTKP--------------HDHRSKYTIKTIKTEYLLSS--INTGVPHAVLQV-SDI 166

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             +DL +    +  H M++ G N++I    + +++ +RT+ERGV G T +CG+ + A+ +
Sbjct: 167 ESFDLMNMAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAI 226

Query: 235 ASGCLHKTNRAVSVKML--GGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
            + CL  +  +  V ++  GG L I +    N V MTG+A   + G +
Sbjct: 227 VA-CLDDSEVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTI 273


>gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 328

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 121/250 (48%), Gaps = 34/250 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQ 56
           +++ F K+ G  N   ++D    H    SD   A  A+   D +H     D I+ +    
Sbjct: 2   AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  +  +  S+
Sbjct: 62  KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVR--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165
             D+  P    ++ P+  + + +     ++G V  LF  N  +           VS+ NP
Sbjct: 120 GFDI--PTYQVEISPVKFNPESLP---MYVG-VEKLF--NQVIPELDEELAFSAVSVPNP 171

Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H I FV+  +   D    LASF N  +++P F +GVN+S  +  + +++ +RT+ERGVG 
Sbjct: 172 HLITFVDQTVLDSDKQEKLASFLN--SENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGF 229

Query: 222 TAACGSAACA 231
           T ACG+A  A
Sbjct: 230 TNACGTAMSA 239


>gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712]
          Length = 268

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 42/235 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     +        T  G+     ++DGS++V M
Sbjct: 54  FMDYRNADGSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAM 113

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G  +L    + +    RS+                  RN   V+MGNPHA+ FVE     
Sbjct: 114 GRAVLAEAGVTVTVDGRSWPA----------------RN---VNMGNPHAVAFVE----- 149

Query: 178 YDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DL   GNL  + P     ++ +GVN+          + +R  ERG   T +CG+ ACA 
Sbjct: 150 -DLDHAGNLFTEPPYEPAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAV 208

Query: 233 VVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            VA+      + A        +V +LGG L+I  H +  + MTG A    EG +D
Sbjct: 209 AVATARRDGADPAETGTPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVD 263


>gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 277

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 131/289 (45%), Gaps = 36/289 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMR----GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++F KM G GN  ++ID R        NI S          +   D ++L+   +    
Sbjct: 1   MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVE--RSPRA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D   R  N DGSEV+ CGNG RCV RF   + +  +  +FET+ G L+  E R   + + 
Sbjct: 59  DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAG-LIDAELRGDDVKLR 117

Query: 120 MGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + EP  +   + IP+      +D                   ++ G PH + FVE +L  
Sbjct: 118 LTEPSSLQANQPIPVGDEILTVDS------------------LNTGVPHVVAFVE-ELGG 158

Query: 178 YDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           +D+  +G  L     F   G N +   VTSL SL +RT+ERGV   T ACG+ + AS +A
Sbjct: 159 FDVFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALA 218

Query: 236 SGCLHKTNRAVSVKMLGGGLL---IEWHDN--NHVFMTGEAKKEWEGKL 279
           +         V V +  G  L    E  D    +V+M G  +  +EG+L
Sbjct: 219 AAARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL 267


>gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 267

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 33/286 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHF----DQIMLIHDFQDASVDA 62
           F KME  GN  ++ D R    NI  + I  L+    + HF    D I+     + +  D 
Sbjct: 3   FWKMEAAGNDFVIFDGR----NIKIEDIQDLAKKLCDRHFGVGADGILFCE--ESSQADI 56

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS- 115
            +   N DGS  + CGNG+RC+ RF+     + +   + ET  G+    L   EN   S 
Sbjct: 57  KMNYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHISQ 116

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V+MG+ I  W+         +  ++   I   +  F R    V++G PH    V++ +
Sbjct: 117 VKVEMGKAI--WE--------KEFQKEILEIEGRSFDFYR----VTVGVPHIAILVDEFM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L  +G+LL KH  F    N++  +V + + + ++TWERG G T  C +   +  V 
Sbjct: 163 KDEELNYWGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVI 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L K    V     GG + ++  D + V + G+A   + G +D+
Sbjct: 223 LQRLQKIKGEVHFYTEGGDVFVQTQD-DFVTIYGKANLIFTGDMDV 267


>gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816]
 gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220]
 gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A]
          Length = 329

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 34/248 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58
           + F K+ G  N   ++D    H    SD   A  A+   D  H     D I+ +    + 
Sbjct: 4   IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  
Sbjct: 64  GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167
           D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NPH 
Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173

Query: 168 IFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T 
Sbjct: 174 ITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231

Query: 224 ACGSAACA 231
           ACG+A  A
Sbjct: 232 ACGTAMSA 239


>gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
 gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
          Length = 329

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 34/248 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58
           + F K+ G  N   ++D    H    SD   A  A+   D  H     D I+ +    + 
Sbjct: 4   IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  
Sbjct: 64  GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167
           D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NPH 
Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173

Query: 168 IFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T 
Sbjct: 174 ITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231

Query: 224 ACGSAACA 231
           ACG+A  A
Sbjct: 232 ACGTAMSA 239


>gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
 gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
          Length = 333

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 124/268 (46%), Gaps = 23/268 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +   +   T  +T      D +++++    
Sbjct: 1   MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +   A +R+IN DGSE   CGNG+R V R+L  +  +  F  +T+   L   +  D    
Sbjct: 61  SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMNANLRVSKQAD---- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF------VVSMGNPHAI-FF 170
           +  G P    ++ P++ + +K+  D   +  +   ++   +       +++ NPH I F 
Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176

Query: 171 VEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L + +P F +GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGG 253
            A+ +A    H    + N+ + V   GG
Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGG 264


>gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
 gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
          Length = 274

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 32/227 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS--- 115
           D  +R+   D SE + CGNG+RC+ ++   +   K+K+F+ ET+ G++  +   D     
Sbjct: 70  DIRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDF 129

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             ++DMG  + D      +R  D M                  + V+ G PHA+ FV  +
Sbjct: 130 MATIDMGTAVYDE-----SREIDGM----------------TVYSVNTGVPHAVIFV-GN 167

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
           +    +      +  HP F +G N++  ++T    + +RT+ERGV G T +CG+ + AS 
Sbjct: 168 VDGIAINEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASA 227

Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + +    KT+   V VK +GG L I   D     MTG A   + G++
Sbjct: 228 LIAAKTGKTHGSVVHVKTVGGPLDITVGDIPQ--MTGPAATVFVGEI 272


>gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 268

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 137/289 (47%), Gaps = 37/289 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R    ++T   IN L T       D ++LI     A+    +
Sbjct: 3   ITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIE--PSATFSFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENR-DGSISVD 119
           +  N DG     CGNG RC V F  +         ++TFE       A  NR D  +   
Sbjct: 61  KYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFE-------ANGNRYDAWV--- 110

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +GE  +  K++      + +D +               F ++ G+PHAI ++  DL   D
Sbjct: 111 LGEENVKLKMLAPQGFKENLDLEG-----------EQCFALNTGSPHAIIYI-SDLDAVD 158

Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS- 236
           +   G+ +  +   F +G N++   +TS  SL LRT+ERGV   T ACG+ A A+ + S 
Sbjct: 159 VNKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMSH 218

Query: 237 --GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
             G +  T   V+VK  G  L +E++++ + VF++G AK  +EG   I+
Sbjct: 219 KLGKISSTTVQVTVKS-GDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266


>gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
 gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
          Length = 332

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57
           V   K+ G GN   ++D       ++       AIN    D    +D    ++++   + 
Sbjct: 3   VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
             V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   D    
Sbjct: 63  PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++     D + + +  + D        I P     L+    V++ NPH I FV+
Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 180

Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T ACG+A 
Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            AS +    LH+     N+ + V   GG
Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268


>gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
 gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
          Length = 266

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 35/288 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+K+ G GN  ++ID R    ++T   INAL T       D ++L+        D  +
Sbjct: 3   INFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVE--PSLHCDFTM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  N DG     CGNG RC V F      +  + + F+FE       A+     ++ + M
Sbjct: 61  KYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRLHM 120

Query: 121 GEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
               LD      AR F   M+ + F    VN            G+PH + F  DD+   +
Sbjct: 121 ----LD------ARDFRYHMEIEGFACTFVN-----------TGSPHVVIFA-DDINAIN 158

Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +A  G  + ++   F EG N++   +TS  S+ LRT+ERGV   T ACG+ A A+ + S 
Sbjct: 159 VAEKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIISR 218

Query: 238 CLHKT-NRAVSVKMLGGGLL-IEWHDN-NHVFMTGEAKKEWEGKLDIK 282
            L K    +V V +  G +L + + +N  ++ +TG AK  ++G + I 
Sbjct: 219 KLGKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266


>gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 334

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57
           V   K+ G GN   ++D       ++       AIN    D    +D    ++++   + 
Sbjct: 5   VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 64

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
             V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   D    
Sbjct: 65  PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 124

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++     D + + +  + D        I P     L+    V++ NPH I FV+
Sbjct: 125 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 182

Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T ACG+A 
Sbjct: 183 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 242

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            AS +    LH+     N+ + V   GG
Sbjct: 243 SASSLMYVLLHQESTDFNQEIHVTNPGG 270


>gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
 gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
          Length = 332

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 22/268 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57
           V   K+ G GN   ++D       ++       AIN    D    +D    ++++   + 
Sbjct: 3   VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
             V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   D    
Sbjct: 63  PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++     D + + +  + D        I P     L+    V++ NPH I FV+
Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNPHLIAFVD 180

Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T ACG+A 
Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            AS +    LH+     N+ + V   GG
Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268


>gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 282

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 8/277 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K   +GN  LV+      D   +  I  +           +LI  F     D  +R
Sbjct: 1   MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVLIGPFSSNVADFGLR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMGE 122
           I N D SE +  GNG+R   R L  +  +K K FT ET  G++ A+ + +G  + V+MG+
Sbjct: 61  IFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMGK 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                + IP+     ++  +  ++  +NH++      V++GNPH +   E          
Sbjct: 121 VSFLSQDIPVWGEPREVLLENLNVMSLNHIY----SAVTIGNPHCVILAESPT-EIMAKE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG L+  HP F    N+   +V     + +  WERG G T A GS++CA+   +  L   
Sbjct: 176 FGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGLC 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + ++ V M GG + IE  ++  V M+G       G +
Sbjct: 236 DSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSI 272


>gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 284

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 129/275 (46%), Gaps = 9/275 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K   +GN  LVI+ +     +T + I  +   +       +L+           +RI 
Sbjct: 3   FYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILLGPLASTKAQFALRIF 62

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124
           N DGSE +  GNG+R   R+L     +  K F+ ET  GI+  A ++   ++ V+MG+  
Sbjct: 63  NPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMGKVS 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + IP+     ++ +++  +      F       ++GNPH +  + DD+      +FG
Sbjct: 123 FWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVARNFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            +   +P+F    N+   +V    ++ +  WERG G T A GS++ A+  A   L   + 
Sbjct: 178 PIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSAAAATAHK-LGLCDS 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + VKM GG +LI+  D+ H+ MT    K  +G+L
Sbjct: 237 KIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 271


>gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
 gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
          Length = 278

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 23/290 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+K++  GN  ++++     D +++S A            D +M   + + A  D  +  
Sbjct: 3   FSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKMNY 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISVDM 120
            N DGS  + CGNG+RC  +F+     +++KSF+ ET  GI    L  +      ISVDM
Sbjct: 61  YNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G        +P     + +      +     L + +   V MG PH +  V DD  +YD+
Sbjct: 121 GRADFRATSVPCTLDSEIILEKEIEV-EGQKLKISS---VLMGVPHTVILV-DDYDNYDI 175

Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
              G  +     +F    N++  +V   E++ ++TWERG   T  CG+  C+S V +  L
Sbjct: 176 DRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAHKL 235

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            K    +V +   GG + + + +  +V M G A+        I TG+++K
Sbjct: 236 GKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAET-------ICTGEFLK 278


>gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
 gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
          Length = 326

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHF----DQIMLIHDFQDA 58
           ++  K+ G  N+  ++D       +T   + +L+   TD         D ++L+ + +  
Sbjct: 3   LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113
           +    +R+IN DGSE   CGNG+R V R+L+ +  +     ET+   L  K+  +     
Sbjct: 63  TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122

Query: 114 -------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
                    +S ++ +   +WK      +F  +D++   + P  H        V++ NPH
Sbjct: 123 QTFQVEISPVSFNVAKLPFNWK----DETF--IDQELPELAPGLHF-----STVAVPNPH 171

Query: 167 AIFFVEDDLYH----YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
            I FV+          +LA++ N    +P F +GVN+S       + + +RT+ERGVG T
Sbjct: 172 LISFVDHKTIKSSLLKELATYLN--GANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFT 229

Query: 223 AACGSAACAS 232
            ACG+A  AS
Sbjct: 230 NACGTAMAAS 239


>gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459]
 gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 329

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58
           + F K+ G  N   ++D    H    SD   A  A+   D  H     D I+ +    + 
Sbjct: 4   IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  
Sbjct: 64  GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167
           D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NPH 
Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173

Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           I FV+    D      LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T 
Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231

Query: 224 ACGSAACA 231
           ACG+A  A
Sbjct: 232 ACGTAMSA 239


>gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
          Length = 333

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D ++ I+        A +R+IN DGSE   CGNG+R V R+L  +  + +F  +T+   L
Sbjct: 50  DGVLAINSPTRPQALAQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANL 109

Query: 107 VAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-V 160
             +++ +      + +V++     +   +P    F  +  +R     +  ++    F  +
Sbjct: 110 RVRKHDNLAKGVKAFAVEISPVSFNKSSLP----FQNLGYNRIIDQYLPEIYPGLRFTSI 165

Query: 161 SMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           ++ NPH I F++ +    + L   G  L   +P F +GVN++ A++     L +RT+ERG
Sbjct: 166 AVPNPHLISFMDQNQIKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERG 225

Query: 219 VGLTAACGSAACASVVASGCLHKT-----NRAVSVKMLGGGLLIEWHDNNHVF 266
           VG T ACG+   A+ +A  CL        N+++ V   GG +    H  NH +
Sbjct: 226 VGFTNACGTGMSATSLAF-CLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTY 277


>gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 329

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58
           + F K+ G  N   ++D    H    SD   A  A+   D  H     D I+ +    + 
Sbjct: 4   IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  
Sbjct: 64  GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167
           D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NPH 
Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173

Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           I FV+    D      LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T 
Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231

Query: 224 ACGSAACA 231
           ACG+A  A
Sbjct: 232 ACGTAMSA 239


>gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
 gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
          Length = 329

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 34/248 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTH----FDQIMLIHDFQDA 58
           + F K+ G  N   ++D    H    SD   A  A+   D  H     D I+ +    + 
Sbjct: 4   IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSEV 63

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  
Sbjct: 64  GPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGF 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHA 167
           D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NPH 
Sbjct: 122 DI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHL 173

Query: 168 IFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           I FV+    D      LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T 
Sbjct: 174 ITFVDQAVLDSNKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTN 231

Query: 224 ACGSAACA 231
           ACG+A  A
Sbjct: 232 ACGTAMSA 239


>gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500]
          Length = 428

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 12/135 (8%)

Query: 159 VVSMGNPHAIFFVEDD---------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
           +VSMGNPH + F++D+         L   D++  G  L    +F +  N+    V +   
Sbjct: 293 LVSMGNPHCVIFLKDNQGSIADESQLESMDISYIGRKLESDGLFIDSCNVEFVSVIAQNK 352

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH-DNNHVF 266
           L +R WERG G T ACG+ ACA  VAS    K+  + ++SV+M GG L+I+W+ ++N V+
Sbjct: 353 LKVRVWERGAGETLACGTGACAVAVASILTGKSVISESISVEMPGGELIIDWNKEDNKVY 412

Query: 267 MTGEAKKEWEGKLDI 281
            TG A   +  +++I
Sbjct: 413 KTGPATTVYSSEVNI 427



 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
           DQ++++ D   +  D  + I N DGS+   CGNG+RC  +++T
Sbjct: 110 DQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCFSKYIT 152


>gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378]
          Length = 329

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 44/301 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A   +   D  H     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165
             D+  P    ++ P+  + + +     ++G V  LF  N  V           VS+ NP
Sbjct: 120 GFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDSELAFSAVSVPNP 171

Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG 
Sbjct: 172 HLITFVDQTVLDSDKQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T ACG+A  A  +    L K      + +        ++D   V +T  AKK+  G++ +
Sbjct: 230 TNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGEISL 279

Query: 282 K 282
           +
Sbjct: 280 Q 280


>gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262]
 gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262]
          Length = 329

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 44/301 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A   +   D  H     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165
             D+  P    ++ P+  + + +     ++G V  LF  N  V           VS+ NP
Sbjct: 120 GFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDSELAFSAVSVPNP 171

Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG 
Sbjct: 172 HLITFVDQTVLDSDKQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T ACG+A  A  +    L K      + +        ++D   V +T  AKK+  G++ +
Sbjct: 230 TNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGEISL 279

Query: 282 K 282
           +
Sbjct: 280 Q 280


>gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 295

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 10/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +   + + K   +GN  LVI       ++ ++ +  +           +L+   +  S D
Sbjct: 13  KQKKIKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDGILVGPLESESSD 72

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-SISV 118
             +RI N DGSE +  GNG+R   RFL  +  +    FT ET+ G +V +   +G +++V
Sbjct: 73  FRLRIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVTV 132

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+       IP A    ++ R+   I      +       ++GNPH +   E      
Sbjct: 133 EMGKVSFLSTKIPAAGEEREVLREHMDISGATFEYC----AATVGNPHCVILCEKSTP-- 186

Query: 179 DLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +LA  +G L+   P F    N+    +    ++ +  WERG G T A GS++ A+   + 
Sbjct: 187 ELARCYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAY 246

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            L   N  ++V M GG L I +  +    MTG   +  EG +D
Sbjct: 247 KLGFCNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMD 289


>gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
 gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
          Length = 285

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 16/273 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V   +  G+GN  +V D       +TS+ +  +  D N       ++          +++
Sbjct: 3   VVLERYHGLGNDYVVFDPNKNELELTSENVRMIC-DRNEGLGSDGVLEGPILKEDGMYVK 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121
           + N DGSE ++ GNG+R   ++L   S +++K+F   T  G + +   N DGS + V MG
Sbjct: 62  VWNPDGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178
           +       IP+         +R  +   + +F R  +    VS+GNPH +  + + +   
Sbjct: 122 KLSFWSDDIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKP 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G+       F + +N  I +V   E + +  +ERG G T A G+ ACA+   +  
Sbjct: 174 LVCKIGDYAELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L  TN  V V+M GG L +E  ++ +VFMTG+ 
Sbjct: 234 LGMTNNKVIVQMPGGELQVEIEEDWNVFMTGDV 266


>gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
          Length = 279

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 38/290 (13%)

Query: 8   FAKMEGIGNKILVID---------MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           F K+ G GN  +V D         ++  +  +    I   +       D ++LI    D 
Sbjct: 3   FVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPDDP 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS-I 116
             D   +  N DGS    CGNG RC VRF   + +  +   FET+ G++ A+   +G  +
Sbjct: 63  QNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGKRV 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V + EP           S+ +M         VN   +   F ++ G PH +  V DDL 
Sbjct: 123 KVLLTEP----------HSYREMQIK------VNGTEISGSF-INTGVPHFVMLV-DDLE 164

Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
           ++D+ ++G  +  H  FS  G N++  +  S  S+ +RT+ERGV   T ACG+ A AS +
Sbjct: 165 NFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATASAI 224

Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKL 279
            +   G + K  + V VK  GG  L    D+    VF+ G   K ++G L
Sbjct: 225 VAYQKGLVKK--KPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272


>gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
 gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
          Length = 329

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 21/192 (10%)

Query: 55  FQDASVDA----FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           F  AS++A     +R+ N D SE   CGNG+R V R+L  +   K    ET++  L   +
Sbjct: 55  FVSASINAGAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQ 114

Query: 111 NRDGSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGN 164
                 S+  G P    ++ P+     A  F    +  F+  P+  L     F  V++ N
Sbjct: 115 AE----SLGFGIPTYQVEISPVLFEPEALPFHYNGKAVFN-EPIPELDNELAFSTVAVPN 169

Query: 165 PHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH I FV+ +    D    LAS+ N   ++P F +GVN+S  +  + + + +RT+ERGVG
Sbjct: 170 PHLISFVDQEQLDSDKQETLASYLN--GENPYFPDGVNVSFVKRLAADKIYVRTFERGVG 227

Query: 221 LTAACGSAACAS 232
            T ACG+A  AS
Sbjct: 228 FTNACGTAMSAS 239


>gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99]
          Length = 329

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 27/183 (14%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  D+  P
Sbjct: 69  MRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSLGFDI--P 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVE 172
               ++ P+  + + +     H+G V  LF  N  +           VS+ NPH I FV+
Sbjct: 125 TYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDTELAFSAVSVPNPHLITFVD 178

Query: 173 DDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A
Sbjct: 179 QSVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTA 236

Query: 229 ACA 231
             A
Sbjct: 237 MSA 239


>gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161]
 gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
 gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
          Length = 329

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 40/253 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD------DNTH----FDQIMLIH 53
           + + F K+ G  N   ++D     +N+ ++  +   TD      D  H     D I+ + 
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEE---ENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  + 
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KA 116

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSM 162
            S+  D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+
Sbjct: 117 TSLGFDI--PTYQVEISPVKFASETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSV 168

Query: 163 GNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
            NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERG
Sbjct: 169 PNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERG 226

Query: 219 VGLTAACGSAACA 231
           VG T ACG+A  A
Sbjct: 227 VGFTNACGTAMSA 239


>gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023]
          Length = 329

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 37/251 (14%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D I+ +    +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL
Sbjct: 52  DGILYVTKSNEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 111

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159
             K  +  S+  D+  P    ++ P+  + + +     ++G V  LF  N  +       
Sbjct: 112 DVK--KATSLGFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVIPELDSEL 161

Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
               VS+ NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ 
Sbjct: 162 AFSAVSVPNPHLITFVDQTVLDSDKQATLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 219

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +RT+ERGVG T ACG+A  A  +    L K      + +        ++D   V +T  A
Sbjct: 220 VRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--A 269

Query: 272 KKEWEGKLDIK 282
           KK+  G++ ++
Sbjct: 270 KKDEAGEISLQ 280


>gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 270

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 33/242 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +VID  G  +  +            +   D ++++    ++  D  +
Sbjct: 1   MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVDMGE 122
           R+ N DGSE + CGNG RC+ R+   R +     +FETI GI+ A+   +GS +++DMGE
Sbjct: 59  RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKAR--VEGSFVNLDMGE 116

Query: 123 PIL--DW--KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LY 176
             L   W  + +P+A             G V   FL       +G PH + ++ED   + 
Sbjct: 117 VDLGKGWFGRKVPMAG------------GEVEADFL------IVGVPHLVIYLEDPDKVD 158

Query: 177 HYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             DL  +G  L +   +F EG N++        SL + T+ERGV  LT +CG+ +CAS V
Sbjct: 159 REDLTRWGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAV 218

Query: 235 AS 236
            +
Sbjct: 219 VA 220


>gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003]
          Length = 303

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 37/251 (14%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D I+ +    +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL
Sbjct: 26  DGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 85

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159
             K  +  S+  D+  P    ++ P+  + + +     ++G V  LF  N  V       
Sbjct: 86  DVK--KATSLGFDI--PTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDAEL 135

Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
               VS+ NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ 
Sbjct: 136 AFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 193

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +RT+ERGVG T ACG+A  A  +    L K      + +        ++D   V +T  A
Sbjct: 194 VRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--A 243

Query: 272 KKEWEGKLDIK 282
           KK+  G + ++
Sbjct: 244 KKDEAGDISLQ 254


>gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
          Length = 282

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 121/284 (42%), Gaps = 25/284 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH---FDQIMLIHD--FQDASVDA 62
           F KM+G GN  +VID R     + + A  A +          D I  + +       VD 
Sbjct: 11  FVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGVDF 70

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGNG RC  R      +        T  G + A+    G + V + 
Sbjct: 71  IWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQL- 129

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  D +L     + DK  R  F               V+ G PH + FV DD+   DL 
Sbjct: 130 TPAKDARLDIALPAADKTLRAHF---------------VNTGVPHTVIFV-DDVAKVDLP 173

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  H  F  +G N + A+V   +++ LRT+ERGV   T ACG+ A A+V  S  L
Sbjct: 174 DLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSHKL 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             T   V+V   GG  L    D ++VF+ G A   + G L +++
Sbjct: 234 GLTGPEVNVTTSGGEQLTISVDGDNVFLAGAATVTFTGDLLLES 277


>gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3]
 gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3]
          Length = 302

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 47/296 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFD-----QIMLIHDFQDASVDA 62
           F K  G GN  +++       ++T+D + AL  D  T        +++L     +A+  A
Sbjct: 20  FVKGHGTGNDFVLLPDPDGDLDLTADLVRALC-DRRTGIGGDGVLRVVLCAAVPEAAGLA 78

Query: 63  -----FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DGS  + CGNG R   R+L      +   F   T  G+ + +   DG 
Sbjct: 79  GRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDGD 138

Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P I+D    P+  +    DRD          F      VSMGNPHA+ F  D 
Sbjct: 139 VTVDMGPPRIIDGPGAPVTVA----DRD----------FTAT--AVSMGNPHAVCFAGD- 181

Query: 175 LYHYDLASFGNL-LAKHPMFS-----EGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
               D+A    L L + P FS     +GVN+ I  V     + +R +ERGVG TA+CG+ 
Sbjct: 182 ---LDVAGLRRLDLTRPPSFSPVDFPDGVNVEIV-VDRPAGVAMRVFERGVGETASCGTG 237

Query: 229 ACASVVASGCLHKTNRA-----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           ACA  VA         A     V V + GGGL++ W     V + G A+  ++G L
Sbjct: 238 ACAVAVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQPET-VLLRGPAELVFDGVL 292


>gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
 gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
          Length = 329

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 34/250 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A   +   D  H     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVK--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNP 165
             D+  P    ++ P+  + + +     H+G V  LF  N  +           VS+ NP
Sbjct: 120 GFDI--PTYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNP 171

Query: 166 HAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG 
Sbjct: 172 HLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGF 229

Query: 222 TAACGSAACA 231
           T ACG+A  A
Sbjct: 230 TNACGTAMSA 239


>gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S]
          Length = 329

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 32/295 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTH----FDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A   +   D  H     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVK--KATSL 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDR----DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
             D+  P    ++ P+  + + +      ++     V  L     F  VS+ NPH I FV
Sbjct: 120 GFDI--PTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+
Sbjct: 178 DQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGT 235

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A  A  +    L K      + +        ++D   V +T  AKK+  G + ++
Sbjct: 236 AMSACSLIKKMLDKDTFETPLNV--------YNDGGRVQVT--AKKDEAGDISLQ 280


>gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
 gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
          Length = 293

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 107/238 (44%), Gaps = 33/238 (13%)

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--------FTFET 101
           M  ++ Q A  + F+   N DGS  + CGNG+R    F+T+R   K         F   T
Sbjct: 63  MPGYEDQAAEAEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGT 122

Query: 102 IRGI----LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
             GI    L A       ++VDMG P+      P  R    +D          H   R+ 
Sbjct: 123 RGGIKRVTLRATGENTADVTVDMGIPVF-----PTERGAVTVD---------VHGTPRDA 168

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTW 215
             V MGNPHA+ FV+      D  S   +    P  +++EGVN+  A   +   L +R +
Sbjct: 169 VDVDMGNPHAVVFVDS---TDDAGSLYEMPTVSPTGVYAEGVNVEFAADVAPRHLAMRVY 225

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEA 271
           ERGVG T +CG+ ACA ++A+      +     +V +LGG L      + H+ MTG A
Sbjct: 226 ERGVGETRSCGTGACAVMIAAARRDAADAGTEYTVDVLGGRLRFVERADGHLEMTGPA 283


>gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
 gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
          Length = 356

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 143/336 (42%), Gaps = 72/336 (21%)

Query: 6   VDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDDN-----THFDQIMLIHD 54
           + F+KM G GN  +V +      + G  + IT   +  ++   +       FDQ ++I++
Sbjct: 13  IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72

Query: 55  FQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFT------------- 98
                  A     +IN DG +   CGNG+RC  +++    ++ KS               
Sbjct: 73  NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132

Query: 99  -FETIRGILVA--------KENRDGSISVDMGEPIL----DWKLIPLARSFDK-MDRDRF 144
             ET+ G+++          +     I V+M   ++     +K        +K    ++ 
Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192

Query: 145 HIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLYHYDLASFG--------------- 184
           +I  +  L L         +VSMGNPH + F+E ++   +L+S G               
Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252

Query: 185 -NLLAKHPMFSEGVNLSIARVTSLESLDL---RTWERGVGLTAACGSAAC----ASVVAS 236
              L K P+F +G N+      + +  +    R +ERG G T ACG+ AC    AS++ S
Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEA 271
            C    ++ V+V M GG LLI+W  +   VF TG A
Sbjct: 313 YCTQ--DKEVTVSMPGGDLLIQWSSETGEVFKTGPA 346


>gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
 gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
          Length = 277

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 27/263 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177
            P +         +FD+   +   +  V+++ L +P     G PHA+       E +L  
Sbjct: 122 PPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258
              H+   A V + +LGG L +E
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248


>gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136]
          Length = 274

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 34/293 (11%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++++ F KM G GN  +++D R     ++ ++I  L           +L  +      D 
Sbjct: 2   ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGGDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVDM 120
            +R  N DG E + CGNG RC  RF+         +  FET  G++ A+   D  + ++M
Sbjct: 62  RMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEFFGD-QVEINM 120

Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175
            +P    L+  L+        +D     +  VN            G PHA+ FV+D   L
Sbjct: 121 SQPHSLKLNQGLV--------VDGTPLEVHSVN-----------TGVPHAVVFVDDVNAL 161

Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              ++   G  L  H  F+ +G N + A V S  S+ +RT+ERGV   T ACG+   A  
Sbjct: 162 STAEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACA 221

Query: 234 VASGCLHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281
           +    LH     VSVK+ GG  L + ++    V+    + G A   ++GKL++
Sbjct: 222 LIHHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274


>gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
 gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
          Length = 277

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 27/263 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177
            P +         +FD+   +   +  V+++ L +P     G PHA+       E +L  
Sbjct: 122 PPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258
              H+   A V + +LGG L +E
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248


>gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.]
          Length = 282

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 43/291 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA------INALSTDDNTHFDQIMLIHDFQDAS 59
           + F KM G GN  ++ID R   +N+  D           +   +   D  +LI +    S
Sbjct: 11  IHFFKMSGSGNDFIIIDNR---ENLIEDKGLASFITKVCARRMSVGADGFILIENCD--S 65

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            D   +  N DGS  + CGNG RC   F   +++ +   +F T  GI+ A+   DG + V
Sbjct: 66  ADFKWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVT-DGRVKV 124

Query: 119 DMGEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +M +P     D++ IPL +            GP+    L      + G PH +  + DD+
Sbjct: 125 NMMDPTYCKYDYQ-IPLKK------------GPITVSSL------NTGVPHVV-IITDDI 164

Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              D+   G  +  H  ++  G N++     S  ++ +RT+ERGV G T ACG+ + AS 
Sbjct: 165 EGADVDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASA 224

Query: 234 VASGCLHKTNRAVSVKMLGGGLL-IEWHDNN----HVFMTGEAKKEWEGKL 279
           + + C +K    + V     G+L I +  +N     +++ G+A+  ++G+L
Sbjct: 225 LVAACKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275


>gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 282

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 10/268 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K +G+GN  LV+D       +    I AL            +++   + +    + 
Sbjct: 5   ITMIKYQGLGNDYLVLDPNKNRVQLQGKKI-ALLCQRGFGLGADGVLYGPVEINGKMGVH 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK--ENRDGSISVDMG 121
           I N DGSE    GNG+R   ++L     +K + F+ ET+ G +  +   +R     V+MG
Sbjct: 64  IYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATEFRVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++  + F     ++        +++GNPH I F+ D++      
Sbjct: 124 KASFISREIPVTGEVREVINETFTFNKKDY----KATCLTVGNPHCIIFM-DEVSPEIAK 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA+  L  
Sbjct: 179 DLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLGL 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           T   ++V   GG + I+  D++ ++MTG
Sbjct: 239 TESRINVNQPGGIIQIDIKDDDTIYMTG 266


>gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 287

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 124/283 (43%), Gaps = 13/283 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
            S + F KM G GN  +V+D+R   D  + +   AL+        D ++ I + + A   
Sbjct: 7   PSTLPFTKMHGAGNDFVVLDLRDGPDP-SPELCRALADRHKGVGCDLVLGIREPRSARAV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           A   I   DGS    CGNG RCV    VR   +R  R  F  ++  G          +  
Sbjct: 66  AAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPR--FALDSPSGTHEVDVLDADTFR 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +  P    + IPL     + D     +G    +       VSMGNPHA+  V DD   
Sbjct: 124 VALAVPRFAPESIPLFGHDGEQDLYEADLGDGTRVRF---AAVSMGNPHAVIEV-DDTAT 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A  G  +    +F   VN+  ARV S + + LR  E G G T ACGS ACA+     
Sbjct: 180 APVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVLM 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
              + +R VSV + GG L I W D+   V MTG A   +EG  
Sbjct: 240 RRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282


>gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
 gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
          Length = 279

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 130/291 (44%), Gaps = 43/291 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R      + +   A        +   D + LI     A  D 
Sbjct: 8   IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSI 116
             R  N DGSE + CGNG RCV RF        +RM+     FET+ GI+ A    D + 
Sbjct: 66  KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMR-----FETLAGIVEATVA-DTTA 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           ++ M  P           SF + DR +  +G    LF+ +   V  G PHA+ FV DD+ 
Sbjct: 120 TIKMTSP----------HSF-RFDR-QIEVG--GQLFMVHS--VDTGVPHAVIFV-DDID 162

Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D+   G  L  HP+F+  G N++    T  +   +RT+ERGV   T ACG+   A  +
Sbjct: 163 EVDMVGLGRQLRHHPVFAPMGTNVNFVGRTG-DGFRIRTYERGVEDETMACGTGVVAGAL 221

Query: 235 ASGCLHKTNRAVSVKMLGG-GLLIEWH-----DNNHVFMTGEAKKEWEGKL 279
            +      +  V++   GG  L +++      D + V + G A   + G+L
Sbjct: 222 IAAVKGYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGEL 272


>gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
 gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
          Length = 382

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 3/127 (2%)

Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           +VSMGNPHA+  V DD+    +   G L+A H  F++ VN    +V     + LR +ERG
Sbjct: 255 IVSMGNPHAVQLV-DDVERAPVPEIGPLIANHARFAQRVNAGFMQVVDRGHVRLRVFERG 313

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWE 276
            G T ACGS ACA+V A   L   +  V V M GG + + W     + V MTG A   +E
Sbjct: 314 AGETLACGSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATDSVVMTGPATTVFE 373

Query: 277 GKLDIKT 283
           G++++ +
Sbjct: 374 GQIELPS 380



 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 9/134 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            + F KM+G GN  +V+D       +++     L+   + HF    DQI+ +     A +
Sbjct: 36  QIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLA---DRHFGVGADQILGVRPAPAADI 92

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DGSEV  CGNG RC+ RF+  +    ++    +T  G++  + N DG +SV
Sbjct: 93  DFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSV 152

Query: 119 DMGEPILDWKLIPL 132
           DMG    +   +P 
Sbjct: 153 DMGRAQFEPASLPF 166


>gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
 gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
          Length = 285

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 24/295 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF--DQIMLIHDFQDASVD 61
           MVDF K  G+GN  +VID    + ++  +  N  L    N     D I+     +D  + 
Sbjct: 1   MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRDGSI 116
              +I+N DGSE +  GNG+R    ++     +    F   T  G   I V  +N +  I
Sbjct: 61  --FKILNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTN-LI 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175
            V +G+       IP+     K+D        +  L  +     V++GNPH I     D 
Sbjct: 118 KVSIGQYSFINHKIPV-----KLDCTEVLNQEIELLGKKEIINCVNIGNPHCILI--KDK 170

Query: 176 YHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              DLA   G +L  HP+F    N+   ++    ++ +  WERG G T A G+++CA+  
Sbjct: 171 ISKDLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASC 230

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            +  L   +  V+V+M GG + +E  +   VF+TGE  +  +G   +   ++IKK
Sbjct: 231 TAYILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKG---VFASEFIKK 281


>gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 45/243 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     +        T  G+      +DG ++V M
Sbjct: 71  FMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIAKDGDVTVGM 130

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+ +L    + ++   RS+                  RN   V+MGNPHA+ FV+     
Sbjct: 131 GKALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DLA  G+LLA  P+     + +GVN+          + LR  ERG G T +CG+ ACA 
Sbjct: 167 -DLAHAGDLLAPPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGACAV 225

Query: 233 VVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            VA+         +  T    +V + GG L+I    +  + MTG A    EG+++    +
Sbjct: 226 AVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE---AE 282

Query: 286 WIK 288
           W++
Sbjct: 283 WLE 285


>gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988]
          Length = 329

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 27/183 (14%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R++N DGS    CGNG+R V R+L  +        ET++ IL  K  +  S+  D+  P
Sbjct: 69  MRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVK--KATSLGFDI--P 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVE 172
               ++ P+  + + +     H+G V  LF  N  +           VS+ NPH I FV+
Sbjct: 125 TYQVEISPVKFAAETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             +   D    LAS+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A
Sbjct: 179 QAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTA 236

Query: 229 ACA 231
             A
Sbjct: 237 MSA 239


>gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
 gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
          Length = 361

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 129/297 (43%), Gaps = 55/297 (18%)

Query: 47  DQIMLIHDFQDASVDAFIR--IINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFT----- 98
           DQ+++ ++       A     +IN DG +   CGNG+RC  +F+  ++++ KS       
Sbjct: 65  DQLIICNNNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKK 124

Query: 99  ----------FETIRGILVA--------KENRDGSISVDMGEPIL----DWKLIPLARSF 136
                      ET+ G+++                + V+MG  ++     WK        
Sbjct: 125 DETTSEIEQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLN 184

Query: 137 DKMDRDRFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVED--DLYHYDLASFGNL--- 186
           +K   D+        L L N       +VSMGNPH I F++   +L + +     NL   
Sbjct: 185 NKQSIDKSAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTM 244

Query: 187 --------LAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVV 234
                   L KHP+F++  N+     ++   L      R +ERG G T ACG+ A A  V
Sbjct: 245 KIEDIAVALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAV 304

Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           AS  +    + + V+  M GG LLI+W   N +VF TG A   +  ++DI+  + I+
Sbjct: 305 ASILMGHCDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIEINRQIE 361


>gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28]
          Length = 271

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 27/210 (12%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D I+ +    +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL
Sbjct: 43  DGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAIL 102

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV------- 159
             K+    + S+    P    ++ P+  + + +     ++G V  LF  N  V       
Sbjct: 103 DVKK----ATSLGFDIPTYQVEISPVKFNAESLP---MNVG-VEKLF--NQVVPELDAEL 152

Query: 160 ----VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
               VS+ NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +  S +++ 
Sbjct: 153 AFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN--SENPYFPDGVNVSFVKRLSDDAIY 210

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHK 241
           +RT+ERGVG T ACG+A  A  +    L K
Sbjct: 211 VRTFERGVGFTNACGTAMSACSLIKKMLDK 240


>gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
          Length = 321

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 14/261 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDAS 59
            ++  K  G GN  ++ID      N T +     AI           D I+ +   +   
Sbjct: 2   FIEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQ--KSEK 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---GSI 116
               ++IIN DGSE + CGNG+RCV +FL           ET++ + + ++ +D   G  
Sbjct: 60  CVGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVF 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           + ++    +D+ +  L   ++K +     +  ++   +R    +S+ NPH + FVE ++ 
Sbjct: 120 TDEITIDSIDFNVDSLPLVYEKENLFFEKLTALSD--IREFTAISITNPHLVSFVE-EIE 176

Query: 177 HYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             +L + G        +  +GVN++  +    +S+ ++T+ERGVGLT +CG+   +S +A
Sbjct: 177 KEELKAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSSSIA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLL 256
           +   H  N         GG++
Sbjct: 237 TLLKHGINEKTYNVYNDGGMI 257


>gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
 gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
          Length = 290

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 16/273 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V   +  G+GN  +V D       +T + +  +  D N       ++          F++
Sbjct: 8   VVLERYHGLGNDYVVFDPNKNELGLTPENVRMIC-DRNAGLGSDGVLEGPVMKEEGMFVK 66

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121
           + N DGSE ++ GNG+R   ++L     +++K F   T  G + VA  N DGS + V MG
Sbjct: 67  VWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDGSRLRVSMG 126

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178
           +       IP+         +R  +   + +F R  +    V++GNPH +  + + +   
Sbjct: 127 KLSFYSDDIPVTG-------ERREVINEDMVFGRTLYPVTCVTIGNPHCVIPMRE-ISKP 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G+       F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  
Sbjct: 179 LVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAAGVAYK 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L  TN  V V M GG L +E  D+ +V+MTG+ 
Sbjct: 239 LGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDV 271


>gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
 gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
          Length = 285

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 24/278 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--------DQIMLIHDFQDAS 59
           F+K   +GN  LV+D +        DA     TDD               +L        
Sbjct: 3   FSKYHALGNDYLVLDPK--------DAPELPGTDDTIRICHRNFGLGSDGILYGPIPTER 54

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SI 116
            D  +RIIN DGSE +  GNG+R   R+L    ++  + FT +T+ GI+  + +    SI
Sbjct: 55  ADFGLRIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSI 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+     + IP+    ++ D++  H   +N       ++  +GNPH +  + +   
Sbjct: 115 KVDMGQVRFGHEHIPVDGP-EQSDQNLGHELEINGTNYTT-YIADIGNPHCVVPLPE--I 170

Query: 177 HYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             +LA   G ++  HP F    N+   +     ++ +  WERG G T A GS++ A+   
Sbjct: 171 SEELACKDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAV 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +  +   +  ++V M GG + IE  D+  + MTG A +
Sbjct: 231 AHRIGLCDETITVHMPGGKIGIEIGDDYAIRMTGPATR 268


>gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379]
 gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
          Length = 288

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 105/232 (45%), Gaps = 36/232 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R    +L     ++    T  T  G       ++G I+V M
Sbjct: 72  FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVHLAKNGDITVSM 131

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+      L+P A     +D   +          RN   V+MGNPHA+ FV DDL H   
Sbjct: 132 GQ-----ALLPGASVTVSVDGRSWPA--------RN---VNMGNPHAVAFV-DDLDHA-- 172

Query: 181 ASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              G+L +  P     ++ EGVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 173 ---GDLFSAPPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAVAVA 229

Query: 236 SGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +      + AV+       V + GG L+I  H +  V MTG A    EG +D
Sbjct: 230 TARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVID 281


>gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
 gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
          Length = 277

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 122/263 (46%), Gaps = 27/263 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A       +S    
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWR-----LSAKHY 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYH 177
           + IL+    P   +FD+   +   +  V+++ L +P     G PHA+       E +L  
Sbjct: 117 KVILN---PPTVTTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 168 --LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLHKTNRA-VSVKMLGGGLLIE 258
              H+   A V + +LGG L +E
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVE 248


>gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
 gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
          Length = 277

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 30/279 (10%)

Query: 8   FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++      N+    +    TD +T    D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG- 121
            I N DGS  ++CGNG+R + R+L    R  +     ET   I     ++D  I+VD+G 
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122

Query: 122 -----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                EP     L      + K     F I  V+        ++SMGNPH I + ++D +
Sbjct: 123 AHMLTEPYEPLSLKSDVTKYCKEIETSFGIWMVD--------MISMGNPHFIIYTDED-H 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           H      G L  ++      VN+ +  V +   L L T+ERG G T ACG+   A+V ++
Sbjct: 174 HTFYEEMGRLSKRY-----DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASA 228

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
               +   N  + V + GG L ++W  N+H+  +G+  K
Sbjct: 229 VVRRQVLPNEIIKVYLPGGILEVKWDLNDHLLTSGKTTK 267


>gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
 gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
          Length = 358

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 93/343 (27%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---------------------D 47
           +KM G GN  +V  +         +A+  L++DD +                       D
Sbjct: 19  SKMHGAGNDFVVFHI---------NAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCD 69

Query: 48  QIMLIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTF------ 99
           Q++++ D        F + +INCDG     CGNG+RC  ++L  + +K KS ++      
Sbjct: 70  QLIIVDDSPKNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQ 129

Query: 100 --ETIRGI-----LVAKENRDGS------ISVDMGEP---------------ILDWKLIP 131
             ET  G+     L+  +N D        + V+MG+P               IL    IP
Sbjct: 130 LIETKSGVIKTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIP 189

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--------------DDLYH 177
              SF  +  D  ++   N + +    +VS G  HA+ F++              +DL  
Sbjct: 190 PKESF-VITIDDLNLPYCNKIEI---VLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSK 245

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARV------TSLESLDLRTWERGVGLTAACGSAACA 231
            ++    + + +HP+F +    ++  V        +  +  R  ERG G T ACG+ ACA
Sbjct: 246 INIKDLADKIQEHPLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACA 305

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEW-HDNNHVFMTGEA 271
             +A+  L+  N +  +S +M GG LLI+W  + N  F TG A
Sbjct: 306 VGIAAYLLNYVNDSSDISCEMPGGNLLIQWSSETNETFKTGPA 348


>gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
 gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
          Length = 277

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 30/279 (10%)

Query: 8   FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++      N+    +    TD +T    D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMG- 121
            I N DGS  ++CGNG+R + R+L    R  +     ET   I     ++D  I+VD+G 
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122

Query: 122 -----EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                EP     L      + K     F I  V+        ++SMGNPH I + ++D +
Sbjct: 123 AHMLTEPYEPLSLKSDVTKYCKEIETSFGIWMVD--------MISMGNPHFIIYTDED-H 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           H      G L  ++      VN+ +  V +   L L T+ERG G T ACG+   A+V ++
Sbjct: 174 HTFYEEMGRLSKRY-----DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASA 228

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
               +   N  + V + GG L ++W  N+H+  +G+  K
Sbjct: 229 VVRRQVLPNEIIKVYLPGGILEVKWDLNDHLLASGKTTK 267


>gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56']
 gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56']
          Length = 265

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 45/295 (15%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M+ ++V F K EG+GN  ++++       +T++A   L         D +++I   Q   
Sbjct: 1   MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQPR- 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS--- 115
               +++ N DGS  + CGNG+RCV  +L SR   +K+ T  T  G    +  R G    
Sbjct: 56  ----MQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG   +   L+  A   +             H F      V +GNPHA+ F   D 
Sbjct: 112 VLVGMGRARMGETLVVTALGAE-------------HRFA----CVDVGNPHAVTF---DP 151

Query: 176 YHYD-LASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAA 229
           Y  D +   G ++A  P  +EG+N+   RV   E      +D+  WERGVG T ACG+ A
Sbjct: 152 YTEDAIDELGPIVATTP--AEGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGA 209

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           CA   A+    +      + V + GG L I     +  + M G A++ + G++ I
Sbjct: 210 CAVAAAACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEVVI 264


>gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
 gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
          Length = 272

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 134/287 (46%), Gaps = 37/287 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASV 60
           + F KM+G GN  +VID +  H  ++++ + AL+        +   D +M++ D    + 
Sbjct: 3   IPFYKMQGAGNDFIVIDNQKLH--LSNEQLVALTKKICQRRLSVGSDALMVV-DVPQNTG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG+E + CGNG RC+ R+   + +       ET+ G + A    + +  V 
Sbjct: 60  DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + EP ++   +P    ++ +  D   +G        NP     G PH +    D L    
Sbjct: 120 LNEPTVEQFDLP----YENISVDYIELG--------NP-----GLPHLVVRC-DALATEP 161

Query: 180 LASFGNL---LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA---S 232
           LASF +    L       +G N+++  V     + LRT+ERGV G T ACG+ A A   S
Sbjct: 162 LASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYS 221

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +V  G +  T   VS++ LGG L ++    + +F+ G+     EG +
Sbjct: 222 LVKKGIVPSTT--VSLQTLGGVLQVQVQ-KDQLFLIGDTNIVVEGSI 265


>gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
 gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
          Length = 271

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 27/285 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+++           A    +   +   D +  +    + + +  +
Sbjct: 1   MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLERTAEGAFN--L 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDM 120
           R+ N DGSE +  GNG RCV  +L    +    T  T  G    +    E  +  IS  M
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179
           G P    +++P   SFD           V+ +       V++GNPH + F + +D   + 
Sbjct: 119 GVP----QVMP--HSFD-----------VDGVGNVQGVDVNVGNPHFVVFTDAEDFSSHG 161

Query: 180 LA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           L+    G  +  HP F  G N+   RV   + ++ R +ERGVG T + G+  CAS  AS 
Sbjct: 162 LSWEELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASI 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            L      ++   +GG   + W   +  + +TG A+    G++ +
Sbjct: 222 ALRGAGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSV 266


>gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
          Length = 274

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 125/290 (43%), Gaps = 30/290 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++ F KM G GN  +++D R       +  + I AL         D ++ +   Q     
Sbjct: 2   LLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGGI 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118
             +R  N DG E + CGNG RC   F  + +   K     FET+ G++ A   +DG+++V
Sbjct: 62  VRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           ++  P     +     + D        +G   H        ++ G PHA+ F+ D L   
Sbjct: 122 NLTNP---HSMQLFVLNADPT------VGADVHF-------LNTGVPHAVAFL-DKLEGL 164

Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D++  G  L  H  FS +G N + AR+ S   + +RT+ERGV   T ACG+   A  +  
Sbjct: 165 DISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALLH 224

Query: 237 GCLHKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGKLDI 281
             L      + V + GG  L + +      F    +TG A   + G + I
Sbjct: 225 AVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274


>gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
 gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
          Length = 258

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 46/285 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      N T               D ++L+ + +D   D  
Sbjct: 3   IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHEDQ--DFT 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+    CGNG RC+V F     + + S TFE I G+  A   +DG + + M +
Sbjct: 61  MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAY-IKDGLVHLKMQD 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +   + ++            +HLFL        G+PH + +V +D+ HYD+ S
Sbjct: 120 -------VSEIKEYE------------DHLFL------DTGSPHHVQWV-NDIEHYDVKS 153

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  L   P++ + G N++    T+ E   LRT+ERGV   T +CG+ A A  +A   +H
Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATT-EGFRLRTYERGVEDETLSCGTGATAVALA---IH 209

Query: 241 KTNR----AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEG 277
           K  +    ++ +++ GG L IE+        ++F+ G A+K +EG
Sbjct: 210 KQGKVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEG 254


>gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
 gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
          Length = 317

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 27/284 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHF----DQIMLIHDFQDASVDA 62
           F K  G+GN  LV     CH ++ +   N  +    + H+    D +++  D  D +++ 
Sbjct: 33  FHKYHGLGNDYLV-----CHHSVAARLSNEQIRILCHPHYGIGSDGLLI--DSGD-NINP 84

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVD 119
            +RIIN DGSE +  GNG+R   R+L    R+    F   T  G +  + + D   + VD
Sbjct: 85  TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVD 144

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG    +   +P     D  +   + +         +  +VSMGNPH +  V       D
Sbjct: 145 MGRANFNPAALPAL--IDLPEALNYPLALAEETLSVS--LVSMGNPHCVVPVT----RLD 196

Query: 180 LAS---FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           LA     G  +  HP+F +  N+ +  V   ++L +  WERG G T A GS++CA+    
Sbjct: 197 LAQVHRLGPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVM 256

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             L++ +  VSV+M GG L I +  + HV M G   K     LD
Sbjct: 257 RKLNRVDDNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300


>gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 332

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 22/268 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQ---IMLIHDFQD 57
           V   K+ G GN   ++D       ++       AIN    D    +D    ++++   + 
Sbjct: 3   VKMIKVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVVDKSEH 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
             V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   D    
Sbjct: 63  PQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVADFAAH 122

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++     D + + +  + D        I P     L+    V++ N H I FV+
Sbjct: 123 VPAYSVEISPVTFDAQTLGMHANNDATTIINEKI-PALSADLKFS-AVAVPNQHLIAFVD 180

Query: 173 -DDLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T ACG+A 
Sbjct: 181 HDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACGTAM 240

Query: 230 CASVVASGCLHKT----NRAVSVKMLGG 253
            AS +    LH+     N+ + V   GG
Sbjct: 241 SASSLMYVLLHQESTDFNQEIHVTNPGG 268


>gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
          Length = 281

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 126/286 (44%), Gaps = 30/286 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F K+ G GN  + ID R      + ++S A            D I        A  D 
Sbjct: 10  IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69

Query: 63  FIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                N DGS  + CGN  RC+    V+   + M+    T   +  I V  E +D +++ 
Sbjct: 70  MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLISITVGDELQDATVT- 128

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            M +P     L+ ++   +K +  + H              V+ G PH + F  D+L  Y
Sbjct: 129 -MTDP--TNILLNVSLEVEK-ETQQVHF-------------VNTGVPHLVVF-HDNLIDY 170

Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+   G LL  H  FS EGVN++  ++ S  S+ +RT+ERGV   T ACG+  CASV+ +
Sbjct: 171 DIIPKGKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIA 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             L      V V M     +IE + NN  V M G     + G+L +
Sbjct: 231 NQLGLVGTNVKV-MTASKEIIELNLNNGKVLMKGPVVHVYTGQLQL 275


>gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
 gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
          Length = 267

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 30/284 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G GN  +++D R     +    I  L         D ++++   Q  + +  
Sbjct: 1   MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQSGA-NFR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
           +R  N DG E + CGNG RC  RF   R+  ++   +FET+ G + A +  D ++ + M 
Sbjct: 60  MRYYNADGGEAEMCGNGARCFGRF-AQRVSGQAGDISFETMAGKITA-QFIDNNVRIQMS 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP      + L  S D                +     V+ G PHA+ FV DDL   D+ 
Sbjct: 118 EP----HSLRLNESLDSGGE------------VLTVHSVNTGVPHAVVFV-DDLEQVDVR 160

Query: 182 SFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            FG  L  H  F+ +G N +  +    +++ +RT+ERGV   T ACG+   A  +    L
Sbjct: 161 RFGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHEL 220

Query: 240 HKTNRAVSVKMLGGGLL-IEWHDNNHVF----MTGEAKKEWEGK 278
                 V+VK+ GG  L I +  +  V+    +TG A   ++G+
Sbjct: 221 TGAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264


>gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
 gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
          Length = 262

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 31/283 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G GN  L+ D       ++   A  A         D I++      AS D  
Sbjct: 1   MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS-VDM 120
           +   N DGS  + CGNG+RC+ R+   R  +       ET  G+        G  S V+M
Sbjct: 59  MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLEGGRASRVEM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178
           G P       P+A               + H F+R    VSMGNPHA+ F+  E+ +   
Sbjct: 119 GSPAFG---APVAL--------------LGHRFVR----VSMGNPHAVAFLPAEEAVERL 157

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL S G  + + P F    N+    V     L +R WERG G T A GS +CA+  A+  
Sbjct: 158 DLRSVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIR 217

Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279
                  V V + GG + +EW   + + ++M G A+   EG+L
Sbjct: 218 EGLARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260


>gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 286

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 126/275 (45%), Gaps = 20/275 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   K  G+GN  L+ D       +T ++I  +   +     D +++        ++  +
Sbjct: 3   ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLVGPVLGQDKLE--V 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE-NRDGS-ISVDM 120
           +I+N DGSE +  GNG+R   ++L     +++  F   T+ G    +  N DG+ I V M
Sbjct: 61  KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       IP+     ++  +    G + +        VS+GNPH + ++ D     DL
Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYRVT----CVSIGNPHCVIWLND--ISKDL 174

Query: 181 ASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           A     + KH      F E +N  + +V    ++++  +ERG G T A G++ CA+  A+
Sbjct: 175 AC---RIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             +  T+  + V M GG L +E   +  V MTGE 
Sbjct: 232 YRMGLTDPKMYVHMPGGVLEVEIEKDGSVLMTGEV 266


>gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
 gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
          Length = 271

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 34/282 (12%)

Query: 8   FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID R G +  +    I  L T       D ++++   ++   D  +R
Sbjct: 7   FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSENH--DFAMR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
             N DG     CGNG RC+ +F        +K   FE       A    DG I ++M   
Sbjct: 65  YYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEIKLNM--- 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181
                L+P      K  RD F +     +F      V  G+PHAI +VE  D+ +  ++ 
Sbjct: 122 -----LVP------KDFRDAFSVDGHECVF------VDTGSPHAILYVENLDETHVVEIG 164

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
               +      F  G N++  ++ S E + +RT+ERGV   T ACG+ A AS + S  L 
Sbjct: 165 Q--KIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASALMSYRLG 222

Query: 241 KTN-RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279
           K + ++V V +  G LL    D    HV ++G A + ++G++
Sbjct: 223 KVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEV 264


>gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
 gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
          Length = 289

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 42/235 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     +        T  G+      +DG ++V M
Sbjct: 71  FMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVHIAKDGDVTVGM 130

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+ +L    + ++   RS+                       V+MGNPHA+ FV+     
Sbjct: 131 GKALLPEGDVTVSVGDRSWPARS-------------------VNMGNPHAVAFVD----- 166

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DLA  GNL +  P      +  GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 167 -DLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGACAV 225

Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            VA+      + A        +V + GG L+I    +  + MTG A    EG++D
Sbjct: 226 AVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID 280


>gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
 gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
          Length = 276

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 40/294 (13%)

Query: 6   VDFAKMEGIGNKILVIDM------------RGCH--DNITSDAINALSTDDNTHFDQIML 51
           V F K  G GN  L+I              R C   D + +D I  L+ ++  H  ++++
Sbjct: 3   VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPRVIM 62

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                         ++  DG+    CGNG RC   +        S   +T  G L A   
Sbjct: 63  T-------------LVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRT 109

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            +G I+++MG P      +P+     + D   F       +      +V+ G PHA+ FV
Sbjct: 110 DEG-ITIEMGTPTFAPDEVPV-----RADEQVFE----EEIEGLEVTMVNTGVPHAVAFV 159

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230
           + D+   DL +    +     F  G N+++A        D RT+ERGV G T +CG+ A 
Sbjct: 160 D-DVDDVDLEAVAPRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAV 218

Query: 231 ASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           A  V +  L +T+   V V   GG L + ++D  +  + G  + E++G++ +++
Sbjct: 219 AIAVVARRLGRTDADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272


>gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 268

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 56/294 (19%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F K +G GN  +++D R     I  +    L    N HF    D I+LI +  D+  D 
Sbjct: 4   NFFKYQGTGNDFILLDDRT--KKIVKEY-TILKKLCNRHFGIGADGIILIQN--DSKSDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETI----RGILVAKENRDGS 115
           +++  N DG E   CGNG RC + F   ++   K     F  I     G+++  E  D  
Sbjct: 59  YMQYYNSDGKESTMCGNGGRCAI-FFAKKLGINKENKIHFRAIDGHHYGLIIKNEKNDKC 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
           +               ++ +   + ++   I P  H+FL      + G+PH I FVE+  
Sbjct: 118 L---------------VSINLINIQKNEIEIHP-EHVFL------NTGSPHHIIFVENIK 155

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           ++  Y+      +  ++P   +GVN++   +   ++L +RT+ERGV   T +CG+   AS
Sbjct: 156 EINVYEEGK--KIRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTAS 213

Query: 233 VVASGCLHKTNRAVSVK-----MLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277
           V+A+   ++TNR  S++      +GG L +   +  +    +++TG  +  ++G
Sbjct: 214 VIAA---YETNRISSIEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQG 264


>gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
 gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
          Length = 330

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 23/295 (7%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN--------ITSDAINALSTDDNTHFDQIM-LI 52
           +S++V   K  G GN  +++D      N         + D      T D    D ++ L 
Sbjct: 4   ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            + Q   +   + +I  DGS    CGNG R    +   +        ET  G   A  + 
Sbjct: 64  INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATLSG 123

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D +I+++MG P+   + +PL       DRD   I     +   +   V+ G PHA+  V 
Sbjct: 124 D-TITIEMGTPVFTPRCVPL-----TTDRDTALID--EQIGSLSITAVNTGVPHAVGMV- 174

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
           DD+    L      +     F  GVN+++A +T       RT+ERGV   T +CG+ A A
Sbjct: 175 DDIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234

Query: 232 SVVASGC---LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            + A  C   +  T+  ++V+  GG L +    +    +TG  ++E++ +L + T
Sbjct: 235 -IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288


>gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 223

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 13/188 (6%)

Query: 94  RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
           ++     T  G +V     D  + V+MGEP  +   +P     +K ++          + 
Sbjct: 41  KRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF--RANKAEKTYIMRAAEQTIL 98

Query: 154 LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR 213
                VVSMGNPH +  V D++    + + G +L  H  F E  N+   +V   E + LR
Sbjct: 99  C---GVVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLR 154

Query: 214 TWERGVGLTAACGSAACASV---VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTG 269
            +ERG G T ACGS ACA+V   +  G L +    V V++ GG L I W    H ++MTG
Sbjct: 155 VYERGAGETRACGSGACAAVAVGIQQGLLAEE---VRVELPGGRLDIAWKGPGHPLYMTG 211

Query: 270 EAKKEWEG 277
            A   ++G
Sbjct: 212 PAAHIYDG 219


>gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 276

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAF 63
           + F+KM  +GN  ++++     +NI+   I  LS D  T   FDQ++LI  F        
Sbjct: 1   MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLS-DRYTGIGFDQLILIEFFCKKYFYFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I+I N D SE   C NG+RCV  FL  +           + I     N   S ++     
Sbjct: 60  IKIFNSDSSESFQCINGIRCVFMFLKIKK-------LIKKNIAFIGNNLGLSKTLMTKNK 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYH 177
           ++  K+ P     +K             + LR        + V +GNPH I  +  ++ +
Sbjct: 113 LICVKIKPPRFYIEKDILVNPKYNNKEKIILRIFKKKITCYFVFVGNPHCII-ISKNIEY 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            + +     L K+ +F   +N+SI  +   + + L+ +ERG G T +CGSAA A+   + 
Sbjct: 172 NNFSLLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAI 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
              K N+ + V    G L + W    N + + G A   ++GK++
Sbjct: 232 YYKKLNKKIKVNFSRGNLYVYWEKIGNFMSIIGPANHIYDGKIN 275


>gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
 gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
          Length = 285

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 18/269 (6%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +  G+GN  LV D    H+ +  D  N  +  D N       ++           +++ N
Sbjct: 7   RYHGLGNDYLVFDPN--HNELKLDEANVKMLCDRNEGLGADGVLEGPILKEDGMHVKVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEPI 124
            DGSE ++ GNG+R   ++L   S +++K+F   T  G + V   N DGS + V MG+  
Sbjct: 65  PDGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLA 181
                IP+         +R  +   + +F R  +    VS+GNPH +  + + +    + 
Sbjct: 125 FWSDEIPVIG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLVC 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+       F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L  
Sbjct: 177 KIGDYSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
           TN  V V M GG L +E  D+ +V+MTG+
Sbjct: 237 TNSKVIVHMPGGELQVEVEDDWNVYMTGD 265


>gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 276

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 127/285 (44%), Gaps = 32/285 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F+K   +GN  +VID +     ++   I A+    N HF    D I+   +  D S D  
Sbjct: 3   FSKYHALGNDYIVIDPKNLSGELSETDIRAIC---NRHFGVGSDGILCGPNESD-SCDFS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDM 120
           ++I N D SE +  GNG+R   R+L   S +    FT ET  G++ +   +DG ++SV M
Sbjct: 59  LKIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGM 118

Query: 121 G------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G      E  L+ + IP      K+    F             ++ ++GNPH +  + DD
Sbjct: 119 GKVRFTHESNLESEPIP---EIIKIKNREFTY-----------YLANVGNPHCVILL-DD 163

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +       +G+++     F    N+   +V    S+ +  WERG G T A GS++ A+  
Sbjct: 164 VTPSLAKEYGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAAS 223

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               L      + V M GG + IE        MTG  +K  EG++
Sbjct: 224 VVHALGLCKSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEI 268


>gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
 gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 277

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 119/288 (41%), Gaps = 36/288 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF------------DQIMLIHDFQ 56
            K +G GN  ++ID R   DN     I  L    N               D ++LI   +
Sbjct: 4   TKYQGSGNDFIIIDNR---DNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKAR 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115
           +          N DGS  + CGNG RC  RF   + +  K   FETI G + A       
Sbjct: 61  NTKNHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAH------ 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDD 174
                   I+D K + +  +     +    I      F      V+ G PH + FV ED+
Sbjct: 115 --------IMDSKRVKVQLTPYHSHQKNIEIKTEYGTF--KGHFVNTGVPHFVIFVDEDE 164

Query: 175 LYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           L + D+   G  +  H  F+ +G N++    T   S  +RT+ERGV G T ACG+ + A 
Sbjct: 165 LDNLDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAAC 224

Query: 233 VVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + +  L    +  V +    G LL    +N+ VF+ G   K +EG L
Sbjct: 225 GINAYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGML 272


>gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7]
          Length = 307

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 134/305 (43%), Gaps = 49/305 (16%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDA---------INALSTDDNTHF--DQIMLIHDFQ 56
           F KM G+GN  + +D  G    ++  A         +  + +  +T    D ++ I   +
Sbjct: 11  FTKMHGLGNDYIYMD--GFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFIQPSE 68

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKEN 111
           +A+    + + N DGS    CGNG+RC  R+         +SF  +T   IR + + K +
Sbjct: 69  EAAFR--MEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGIRSVYIRKTD 126

Query: 112 RD---GSISVDMGEPI-LDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNP 165
                 S+ VDMG    L  + + L    +  D   F  G  PV +        VS GN 
Sbjct: 127 EGEHITSVRVDMGVMANLGEQRVLLKAKEEWTD---FTGGSFPVQY--------VSAGNR 175

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-----TSLESLDLRTWERGVG 220
           H IFFVE+ +  + L     L+   P   +GVN+  A V     T  + + +R  ERG G
Sbjct: 176 HCIFFVEN-VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGSG 234

Query: 221 LTAACGSAACASVVAS----GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            T ACG+ ACA   A+     C +  N  V ++  GG L   +  +  + M G A+  +E
Sbjct: 235 ETMACGTGACAVTAAAVWQGYCRYDEN--VEIRQPGGILTTAYLADGRMLMEGPAEYVFE 292

Query: 277 GKLDI 281
           G  DI
Sbjct: 293 GYFDI 297


>gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
 gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
          Length = 264

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 132/286 (46%), Gaps = 30/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++ + F+KM G GN  +V D      ++++D I +L T       D ++LI     A  D
Sbjct: 2   NTSIKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIE--PSARFD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             ++  N DG     CGNG RC V F  T      +  FE       A  NR  +   D 
Sbjct: 60  FAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFE-------ANGNRYDAWVCD- 111

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
               +  K+I L   F    RD F    ++  F      V+ G+PH I F  D+L  +D+
Sbjct: 112 -NEAIRLKMI-LPHDF----RDEFGSNGLSCNF------VNTGSPHTIIFT-DELDTFDV 158

Query: 181 ASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            S G L+     +F EG N++  +VTS ESL +RT+ERGV   T ACG+ A A+ + S  
Sbjct: 159 ESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMSYK 218

Query: 239 LHKTNRAVSVKMLGGG--LLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           L K         +  G  L I++  D   V+++G A   + G + +
Sbjct: 219 LGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSIQM 264


>gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 304

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 122/271 (45%), Gaps = 10/271 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K   +GN  L+ D     + +  + I  L  + N       ++          +++
Sbjct: 25  MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKL-CNRNYGIGADGIVEGPYKKEGKMYVK 83

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121
           + N DGSE +  GN +R    +L +   ++ +SF+  T  G + +   NR+G+ I + MG
Sbjct: 84  VYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTMG 143

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +   D + I L     +   + F+ G   +        VS+GNPH +  + D++    + 
Sbjct: 144 QLSFDSEKIGLTGPKREALHEYFNFGGEEYACT----CVSVGNPHCVI-ITDEISRAKVC 198

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+  A+  L  
Sbjct: 199 AIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLGL 258

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  V V   GG L  +  +N +V M G  K
Sbjct: 259 IDSDVMVHTPGGKLWTQIDENFNVKMIGSVK 289


>gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
 gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
          Length = 310

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 123/290 (42%), Gaps = 25/290 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +   V F K  G+GN  +VID     + +++D +  +   +       +L   F  +  D
Sbjct: 22  KGGQVQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILFGPFAGSRGD 81

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK-ENRDGSIS 117
             +RI N DGSE +  GNG+R   R+L           F  +T  G++ A     DG I+
Sbjct: 82  FGLRIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLIT 141

Query: 118 VDMGEPILDWKLIP--------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           VDMG    +   IP        L +      RD  + G             ++GNPH + 
Sbjct: 142 VDMGTVSFEAADIPVTGITGEVLNQPVCVKGRDLVYCG------------ATIGNPHCVV 189

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              D++        G+ L   P F    N+   +V    ++ +  WERG G T A GS+A
Sbjct: 190 LC-DEISDQMALELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSA 248

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            AS   +  +   ++++ V M GG L I   D+  + +TG A K   G L
Sbjct: 249 SASAAVARRIGVCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGTL 298


>gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae]
          Length = 180

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 8/172 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           EP  +  ++P     +K ++          +      VVSMGNPH +  V+D
Sbjct: 121 EPNFEPSVVPF--RANKAEKTYIMRAAEQTVLCG---VVSMGNPHCVIQVDD 167


>gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 141

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDA 62
           ++ F KM G+GN  +V+D+   H +I          D +T   FDQ++L+    +  VD 
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWG-DRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPL 132
           G P      IP 
Sbjct: 121 GPPRFVPDEIPF 132


>gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
 gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
          Length = 281

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 44/295 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDAS 59
           M++F K++G GN  +VID R    ++TS  ++ L+        +   D ++++   +  +
Sbjct: 1   MLEFTKIQGNGNDFIVIDNR--EGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFET----IRGILVAKENRDG 114
               +R+ N DGSE + CGNG RC+ R+    ++  +  +FET    I G++ A      
Sbjct: 59  FT--MRLFNNDGSEGEMCGNGARCIARYAWEKKIAGEKMSFETLAGPIHGVVTAP----- 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE- 172
            + +DMGE  L        +S  K++ + F            PFV + +G PH + FV+ 
Sbjct: 112 FVELDMGETNLSQGF--WGQSL-KVEGETF------------PFVYLVVGVPHCVLFVDN 156

Query: 173 -DDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
            +D  H  L   G  +      F +G N++  + +   +L + T+ERGV  LT +CG+ +
Sbjct: 157 LEDFSHDSLRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGS 216

Query: 230 CASVVASGCLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279
            AS +A+  + +    + V+  GG   + + +++   +   ++TG+     EG+L
Sbjct: 217 TASAIAASIVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271


>gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 280

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 29/258 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMR-GCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M+ FAK  G GN  ++I+ + G +  D ++  A        +   D ++++   +  + D
Sbjct: 1   MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDM 120
            ++R+ N DGSE + CGNG RC+ R+   +   KS  TFET  G + A  N   + ++DM
Sbjct: 59  FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPPWA-TIDM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVED--DLYH 177
           GE                +D      G +N      P+V   +G PH + F     D+  
Sbjct: 118 GE----------------IDVSNLKEGKINAFGKEIPYVAFYVGVPHCVLFFPGFRDIPR 161

Query: 178 YDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
             L S   ++  K  +F EG N++ A     + +   T+ERGV   T +CG+ + A  +A
Sbjct: 162 DSLLSLARHIRRKGAIFDEGANVNFAERNK-DCIGAMTYERGVEDFTLSCGTGSIACCLA 220

Query: 236 SGCLHKTNRAVSVKMLGG 253
           S  L  +  A+ VK  GG
Sbjct: 221 SHLLFGSPLAMKVKNPGG 238


>gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
 gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
          Length = 120

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  VED +   ++   G +L +H  F E  N+   ++    +L LR +ERG G 
Sbjct: 1   MGNPHCVIQVED-IKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           T ACGS ACA+V         ++ V V + GG LLIEW  + N ++MTG A   ++G + 
Sbjct: 60  TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119

Query: 281 I 281
           +
Sbjct: 120 L 120


>gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 288

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R    +L     ++    T  T  G       ++G I+V M
Sbjct: 72  FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHLAKNGDITVSM 131

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G  +L  + + ++   RS+                  RN   V+MGNPHA+ FV DDL H
Sbjct: 132 GRALLPGESVTVSVGDRSWPA----------------RN---VNMGNPHAVAFV-DDLDH 171

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
                 G+LL   P+     + +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 172 A-----GDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAV 226

Query: 233 VVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            VA+      + A +       V + GG L+I  H +  + MTG A    EG +D
Sbjct: 227 AVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID 281


>gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 285

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 125/271 (46%), Gaps = 12/271 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   K  G+GN  L+ D       +T +A+  +   +     D +++     +  ++  +
Sbjct: 3   ITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLVGPILGENKME--V 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDM 120
           +I+N DGSE +  GNG+R   ++L     +++  F   T+ G   +   N +G+ I V M
Sbjct: 61  KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G        IP+     ++  +    G + +        VS+GNPH + ++ +D+    +
Sbjct: 121 GHLSFWSDEIPMTGPRREVLNETLTFGSIPYRVT----CVSIGNPHCVIWL-NDISKDLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E VN  + RV    ++++  +ERG G T A G++ CA+  A+  + 
Sbjct: 176 CRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYKMG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            T+  + V M GG L +E  ++  V MTG+ 
Sbjct: 236 LTDPKMYVHMPGGVLEVEIEEDVSVLMTGDV 266


>gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
 gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
          Length = 300

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R    +L     ++    T  T  G       ++G I+V M
Sbjct: 84  FMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHLAKNGDITVSM 143

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G  +L  + + ++   RS+                  RN   V+MGNPHA+ FV DDL H
Sbjct: 144 GRALLPGESVTVSVGDRSWPA----------------RN---VNMGNPHAVAFV-DDLDH 183

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
                 G+LL   P+     + +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 184 A-----GDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGACAV 238

Query: 233 VVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            VA+      + A +       V + GG L+I  H +  + MTG A    EG +D
Sbjct: 239 AVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID 293


>gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 280

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 10/271 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K   +GN  L+ D     + +  + I  L  + N       ++          +++
Sbjct: 1   MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKL-CNRNYGIGADGIVEGPYKKEGKMYVK 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121
           + N DGSE +  GN +R    +L +   ++ +SF+  T  G + +   NR+G+ I + MG
Sbjct: 60  VYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +   D + I L     +   + F+ G   +        VS+GNPH +  + D++    + 
Sbjct: 120 QLSFDSEKIGLTGPKREALHEYFNFGGEEYACT----CVSVGNPHCVI-ITDEISRAKVC 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+   +  L  
Sbjct: 175 AIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  V V   GG L  +  +N +V M G  K
Sbjct: 235 IDSDVMVHTPGGKLWTQIDENFNVKMIGSVK 265


>gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132]
 gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132]
          Length = 283

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 19/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R  G   +  +D   A+         D +  + +  + S+  
Sbjct: 8   VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGN  RC  +   +  +      F T  G + AK   DG       
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDGP-----E 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E  +  +L P  R+   +  D     P+   F         G PH + FV DD+   D+ 
Sbjct: 123 EGRVKVQLTPPLRTETDIVID-VDGSPLTVHF------TDTGVPHTVVFV-DDVKSVDIM 174

Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  H  F+  G N++ A+V   +++ LRT+ERGV   T ACG+ A A+ + +  L
Sbjct: 175 DLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLLAHTL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             T     +   G  +L  + +N  VF+ G A+  ++G+  +K
Sbjct: 235 GLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277


>gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 46/296 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST------------DDNTHFDQIMLIH 53
           +DFAK++G GN  ++ID R   D      I  L                    D ++LI 
Sbjct: 1   MDFAKLQGSGNDFILIDNR---DGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIE 57

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR 112
           + +D + D   +  N DGSE + CGNG RC VRF     +     +FET+ G++ A E  
Sbjct: 58  EPEDNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRA-EVL 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +G   V +       +L P +   +K  R       V    L   F ++ G PH +  V+
Sbjct: 117 EGGKRVKV-------QLTPPSEPLEKTLR-------VEGTDLEGVF-INTGVPHFVVPVK 161

Query: 173 DDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230
            D+   D+   G  +  H  F  +G N++     + +++ +RT+ERGV   T ACG+ A 
Sbjct: 162 -DIDKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGAT 220

Query: 231 ASVVAS---GCLHKTNRAV---SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           A  + +   G + +    V   S ++LG    +++ +N   VF+ G   K +EG L
Sbjct: 221 AGAIVAYLKGLVSRKPVQVITKSEEVLG----VDFDENFREVFLNGAVYKVFEGTL 272


>gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
 gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
          Length = 278

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 20/280 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI---HDFQDASVDAFI 64
           F K  G GN  ++++   C  + +  A       D    D ++ +    +F+   V   +
Sbjct: 5   FEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRV--IM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            ++  DGS  + CGNG RC   +   R        +T+ G   AK + DG  +++MG P 
Sbjct: 63  TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIH-DGGATIEMGAPE 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+A     ++     +G  +         V+ G PHA+ FV DD+   +L    
Sbjct: 122 FGPNDVPVAGDEPLIET---RVGDYDVT------AVNTGVPHAVAFV-DDVTAVNLERDA 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +    +F EG N++ A        D RT+ERGV G T +CG+ A A   A+  L  T+
Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230

Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              VSV   GG L +   D N   +TG  ++E+ G L + 
Sbjct: 231 GENVSVSPPGGDLEVTVDDRNAT-LTGPVEREFGGDLRVS 269


>gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
 gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
          Length = 276

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 127/293 (43%), Gaps = 42/293 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V+F KM G GN  +VID R       ++           ++   D ++ + D +    D 
Sbjct: 4   VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSE--KYDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DG EV+ CGNG RCV RF     +     TFET+ G + A E +   + V   
Sbjct: 62  GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISA-EVKGRMVKV--- 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                  L+P  R+ +  D D     P    +L   F V+ G PH +  V  DL  + + 
Sbjct: 118 -------LLPAPRN-EATDVDL----PFLAGWLSCDF-VNTGVPHVVVQV-SDLEKHPVF 163

Query: 182 SFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  H  FS EG N +   +     L +RT+ERGV G T ACG+ A AS + +   
Sbjct: 164 DQGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRR 223

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK--WIKKN 290
              +  V+V   GG  LI      H+   GE         D++TG   W++ N
Sbjct: 224 GSVSSPVTVHTQGGEELI-----IHLSSEGE---------DVRTGDRIWLQGN 262


>gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ]
          Length = 265

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 25/283 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60
           S+ + F K  G GN  +V+D R    +    A+     D       D ++  ++  +   
Sbjct: 4   SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSDE--Y 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +  +N DG EV  CGNG R +  F    +  +  F F+T  G+  +   + G I ++
Sbjct: 62  DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M +       +    + D  D           +  ++ F +  G PH ++F+ D L +  
Sbjct: 122 MTQ-------LSEINTIDVSDL----------ITSKDSFFMDTGVPHCVYFL-DSLDNIP 163

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           L  +G  +     FSEG N +   +     L +RT+ERGV G T ACG+ A A   A   
Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L+K    + + + GG L + + D   V+++G+ +K + G  ++
Sbjct: 224 LYKQIDHIKIDVPGGELEVLFEDGK-VYLSGKVEKIFSGVFEV 265


>gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
 gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
          Length = 289

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 23/285 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K + +GN   +++ R     +T   I A       HF    D I+L+ +       A 
Sbjct: 3   FEKWQALGNDYAIVEQRDLPFELTPARIRAFCAG---HFGVFADGILLLSESDQPGFVAD 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++I N DGSE +  GNG R  + +L  R       F+ +T  G +        +  VDMG
Sbjct: 60  LKIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179
              L  K  P        D  R  +    H +      VS+GNP     V+  + L   D
Sbjct: 120 RAKLTSKDFP-----SGPDDGRAQLTAGQHQWSFQ--HVSIGNPQCSIRVDSLEALDALD 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---- 235
           L + G  +  H  F    N+S     + + +  R +ERGVG T + G+ A  + VA    
Sbjct: 173 LPAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLR 232

Query: 236 -SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             G        V+V + GG L +E  ++ HV +TG A   + G L
Sbjct: 233 GGGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTL 277


>gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
 gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
          Length = 317

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 22/202 (10%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           D I++I     A   A +R+ N DGSE   CGNG+RCV R++  R   +    ET++  L
Sbjct: 41  DGILVI--LPSAVAHAKMRVFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASL 98

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDK-----MDRDRFHIGPVNHLFLRNPF-VV 160
             K+      +++ G      ++ P++ S        +D   +   P+  +    PF  V
Sbjct: 99  RVKKEE----TLNEGIETYAVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAV 154

Query: 161 SMGNPHAIFFVEDDL-----YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRT 214
           S+ NPH I  V ++L     +    A   N   ++  F +GVN+S   VT +E  + +RT
Sbjct: 155 SVPNPHLIGIVPEELQKDTSHQQKWAQQFN--GENKYFPDGVNVSY--VTPVERGIFVRT 210

Query: 215 WERGVGLTAACGSAACASVVAS 236
           +ERGVG T ACG+A  AS + S
Sbjct: 211 YERGVGFTNACGTAMTASALIS 232


>gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a]
 gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a]
          Length = 368

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 39/238 (16%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA----- 62
           F K  G GN  +V+        +T+D + AL  D  T      ++     A+V       
Sbjct: 9   FVKGHGTGNDFVVLPDPDGDLELTADLVRAL-CDRRTGVGADGVLRVVLSAAVPEVAPLA 67

Query: 63  -----FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
                F+   N DGS  + CGNG R   R+L +    +   FT  T  G+ + +    G 
Sbjct: 68  GAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAGD 127

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L         +    +RD   +G            VSMGNPHA+ F +D  
Sbjct: 128 VTVDMGPPRLSAGA---GSAVTVAERDFTAVG------------VSMGNPHAVCFADD-- 170

Query: 176 YHYDLASFGNL-LAKHPMFS-----EGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
              D+ +  +L L + P FS     +GVN+ I  V     + +R +ERGVG TA+CG+
Sbjct: 171 --LDVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGT 225


>gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C]
 gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C]
          Length = 291

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 45/245 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     ++       T  G+     ++ G ++V M
Sbjct: 72  FMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVHLDKTGDVTVSM 131

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G  +L    + ++   RS+                  RN   V+MGNPHA+ FVE     
Sbjct: 132 GRALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVE----- 167

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             L   GNL +  P      +  GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 168 -SLDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 226

Query: 233 VVAS-----GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            VA+         +T R VS  V + GG L+I  H +  V MTG A     G+ +     
Sbjct: 227 AVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE---AA 283

Query: 286 WIKKN 290
           W+ + 
Sbjct: 284 WLTET 288


>gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653]
          Length = 303

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 40/245 (16%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFET---IRGILVAKENR 112
           A  + F+   N DGS  + CGNG+R   R+L      +    T  T   +R I +AK   
Sbjct: 68  AEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEEGDLTIATRAGLRHIHIAKAAP 127

Query: 113 DGS-----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           +G+     ++V MG+ +L         + +  DR             RN   ++MGNPHA
Sbjct: 128 EGAPDSGAVTVGMGKAVLPEPGPDGDVTVEVGDRT---------WSARN---INMGNPHA 175

Query: 168 IFFVEDDLYHYDLASFGNLL---AKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           + FV+D      L   GNL    A HP   + +G N+        + + +R  ERG G T
Sbjct: 176 VAFVDD------LDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGET 229

Query: 223 AACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            +CG+ ACA +VA+      + AV       +V + GG L+I    +  V MTG A    
Sbjct: 230 RSCGTGACAVMVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVA 289

Query: 276 EGKLD 280
           EG+LD
Sbjct: 290 EGELD 294


>gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 278

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 9/213 (4%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118
           +++I N DGSE    GNGM    R+L     +++   ++ T+ G + V   N +G+ + +
Sbjct: 49  YVKIYNPDGSEAPKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGTRVKI 108

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P      IP+     +M       G + ++       +S+GNPH + ++ +++   
Sbjct: 109 SMGKPTFWSDEIPVTGERREMVNQTMVFGKIPYITT----CLSIGNPHCVIWM-NEISKE 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G      P F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  
Sbjct: 164 LVCRIGEHSENAPCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANR 223

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L   +R + V M GG L +E  ++  V+MTGE 
Sbjct: 224 LGLADRNMYVHMPGGILEVEIKEDGVVYMTGEV 256


>gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
 gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 32/236 (13%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR------------------KSFTFETIRGI 105
           +R+   DG     CGNG RC  ++   R++R                    F  +T  G 
Sbjct: 63  MRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDTPAGE 122

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
             A+   D +I ++MG P  +   +PLAR  + + R+      V  L        + G P
Sbjct: 123 RRARVGED-TIEIEMGVPSFEPADVPLARE-EPLIREDVEGWEVTAL--------NTGVP 172

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAA 224
           HA+ FV DD+   DL +    +    +F EG N+++A   S    D RT+ERGV G T +
Sbjct: 173 HAVVFV-DDVSTTDLGAMAPPIRHAEVFPEGANVNLAS-PSERGFDQRTFERGVEGETRS 230

Query: 225 CGSAACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+ A A + VA          VSV   GG L +   D+    ++G  + E  G++
Sbjct: 231 CGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286


>gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 267

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 136/293 (46%), Gaps = 53/293 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           +DF K +G GN  +++D R     I  +     +   + HF    D I+LI +  D S D
Sbjct: 3   MDFFKYQGTGNDFIILDNR--KKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD--GSISVD 119
            +++  N DG E   CGNG RC + F               + + + KEN+    +I  D
Sbjct: 59  FYMKYYNSDGKESTMCGNGGRCAIAFS--------------KKLGIPKENKIYFRAIDGD 104

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHY 178
               I +  LI L          +F    +N + +   +V ++ G+PH + FV +++   
Sbjct: 105 HCGIIQERGLISL----------KFIDIEINMIKISKKYVFLNTGSPHHVLFV-NNIKEI 153

Query: 179 DLASFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           D+   G  +  H  +S   GVN++   ++   +L +RT+ERGV   T +CG+   ASV+A
Sbjct: 154 DVCKQGRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLA 213

Query: 236 SGCLHKTNR-------AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277
           +   ++T R        V +  LGG L + +   ++    +++TG  +  +EG
Sbjct: 214 A---YETGRISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEG 263


>gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
 gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
          Length = 276

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 29/262 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NTHFDQIMLIHDFQDASVDA 62
           + KM+G GN  +VID R    N +S  +  L+        +   D +M + D  + + D 
Sbjct: 5   YTKMQGAGNDFIVIDNR--RYNFSSKQLAKLAAQVCQRKFSIGADALMAV-DHPEGTGDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   +++  ++   ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P +          FD+   DR  +  V+++ L +P     G PHA+      L    L 
Sbjct: 122 PPTV--------AKFDQPFADR-EVPVVDYIELGDP-----GIPHAVVKYPG-LQETSLD 166

Query: 182 SFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +L  +      F +G N++     S   L +RT+ERGV G T ACG+ + A+  A  
Sbjct: 167 ALTDLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVA 226

Query: 238 CLHKTNRA-VSVKMLGGGLLIE 258
              +  +A + + +LGG L +E
Sbjct: 227 RRREQTQANLVLHVLGGELRVE 248


>gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
 gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
          Length = 257

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 32/280 (11%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID R    N+T + + A+ T       D ++L+   + A  D  +   N 
Sbjct: 1   MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLETSETA--DFRMNYHNA 58

Query: 70  DGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           DG     CGNG RC V F   +  R   K + FE       A+   + S+ + M  P  D
Sbjct: 59  DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-D 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGN 185
           +             RD    G  N  F      V  G+PHAI +V ++L   D L   GN
Sbjct: 118 F-------------RDGLQAGAWNCHF------VDTGSPHAIAYV-NNLDQLDVLTEGGN 157

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-TN 243
           +     +F +G N++   +T+ ++L +RT+ERGV   T ACG+   A+ + S  L K T+
Sbjct: 158 IRHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTS 217

Query: 244 RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
             V VK+  G  L+   +   + +++ G A+  + G + +
Sbjct: 218 SLVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257


>gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
 gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
          Length = 274

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 120/291 (41%), Gaps = 31/291 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +V+      D   S     L T   +   D I+++    + S  A I
Sbjct: 5   LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVG--AERSDAARI 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R  N DGS  + CGNG RC  R+   R  ++   F   T  G L      DG   V M E
Sbjct: 63  RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-- 179
           P                ++ RF    V     + P   + +G PHA+ FV D   H D  
Sbjct: 123 P----------------EQVRFDAMTVEAGEEQWPLHALWVGVPHAVVFVPDVERHSDEH 166

Query: 180 LASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           L + G  L    KH  F  G N++   V     +  RT+ERGV  LT ACG+ A A+   
Sbjct: 167 LTALGRALRYDDKH--FPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFV 224

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              L      V + + GG L ++  D   +++ G+A+    G L  +   W
Sbjct: 225 VHTLLDRPWPVDLVVDGGRLTVDQRDGR-LWLIGDARIIARGTLSPEALAW 274


>gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
 gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
          Length = 285

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 32/293 (10%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL---VAKENRDG 114
           + D  +  +N DGS    CGNG RC+ RF   +  +     F+T  G+     A EN   
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRATTAPENNPS 124

Query: 115 SISV---DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            + +   D+ E   D   + L RS  +               +R       G  H +  V
Sbjct: 125 GVRLFVPDITEVRAD---VALDRSVPQA--------------VRRLCFAHAGTEHLVAVV 167

Query: 172 EDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
            DDL    +  +G  L + P  +  G N++   +   + L LRT+E+GV   T +CG+  
Sbjct: 168 -DDLDAVPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGV 226

Query: 230 CASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            A+   +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 227 LAAAETAGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
 gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
          Length = 329

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           A V   +++IN DGS    CGNG+R V R+L  + +   F  +T +  L          +
Sbjct: 61  AGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTDQADLHVGR----VAT 116

Query: 118 VDMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P++ +   +     ++D+    PV     +  F  V++ NPH I   
Sbjct: 117 IGNGLPTYQVEISPVSFNTKNLPMQIENQDKLFNAPVRDFDDQLLFSAVAVPNPHLIAID 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            ++ L    LA  G+ L A +P F +GVN+S  RV     L ++T+ERGVG T ACG+  
Sbjct: 177 NNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNACGTGM 236

Query: 230 CAS 232
            A+
Sbjct: 237 SAT 239


>gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
 gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
          Length = 250

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 42/281 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K +G GN  ++ID R   +    D             D ++LI   ++   D  +R  
Sbjct: 3   FYKYQGTGNDFVMIDNR--SNTFQGDVAALCHRRFGIGADGLILIE--KEEGYDFRMRYF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN---RDGSISVDMGEPI 124
           N DG+E   CGNG RC V+F +              GI   K +    DG    ++ +  
Sbjct: 59  NADGAEGSMCGNGGRCAVQFASDL------------GIFEGKTSFIAVDGPHEAEITDKK 106

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +  K+I               + P+  +     + ++ G+PH I F E+ +   D+++ G
Sbjct: 107 VSLKMI--------------DVHPLEEV--PEGYFLNTGSPHLIIFTEN-VDAIDVSTEG 149

Query: 185 NLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             +   ++ M   GVN++  +V S  S+ +RT+ERGV   T +CG+   A+ + S  +  
Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209

Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279
            +  V V+ LGG L +++   +    V +TG A+K +EG+L
Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250


>gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331]
          Length = 290

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 110/242 (45%), Gaps = 43/242 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDGSI 116
           F+   N DGS  + CGNG+R   R+L    +R  F  +      T  GI  A  ++DG I
Sbjct: 72  FMDYRNADGSVAEMCGNGVRVFARYL----QRAGFVADGDLAVATRGGIKRAHIDKDGDI 127

Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           +V MG  +L    + +    RS+D                 RN   V+MGNPHA+ FVED
Sbjct: 128 TVSMGRAVLPGSGVTVTVDGRSWDA----------------RN---VNMGNPHAVAFVED 168

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
             +  DL S     +   ++ +GVN+          + +R  ERG G T +CG+ ACA  
Sbjct: 169 LDHAGDLFSV-PPFSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGACAVA 227

Query: 234 VASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           VA+      + A        +V + GG L+I  H +  + MTG A    EG +D     W
Sbjct: 228 VAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDP---SW 284

Query: 287 IK 288
           ++
Sbjct: 285 VE 286


>gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f]
 gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f]
          Length = 311

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 28/233 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L         S    T  G+        G +SVDM
Sbjct: 77  FMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPPAGDVSVDM 136

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P+      + R+   +G            VSMGNPHA+ F  DDL   +L
Sbjct: 137 GPPEFASGTVPVT----VVGREFAAVG------------VSMGNPHAVCF-ADDLGPSEL 179

Query: 181 ASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           A     +   P   F +GVN+ +  V S + + +R +ERGVG TA+CG+ ACA  VA   
Sbjct: 180 ARLDLGVPVFPAEAFPDGVNVEVV-VPSADGVAMRVFERGVGETASCGTGACAVAVAWAA 238

Query: 239 LHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                    V V + GG L ++W +   V + G A    +G L     +WI++
Sbjct: 239 RVGGTPPSEVLVDLPGGRLTVDWRETT-VILRGPAVLVSDGVLRP---EWIRQ 287


>gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
          Length = 288

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 123/276 (44%), Gaps = 11/276 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G+GN  LV   R   + ++++ I  L           +LI D  D  ++  +RII
Sbjct: 6   FHKYHGLGNDYLVCH-RDVAEQLSNEHIQMLCHRHYGVGSDGLLI-DSGD-QINPTLRII 62

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPI 124
           N DGSE +  GNG+R   R+L    R+  + F   T  G +    + D   ISVDMG   
Sbjct: 63  NPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMGRAN 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            +   +P   +  +         P+    L +  +VSMGNPH +  V D L    +   G
Sbjct: 123 FNPAALPALVNLPEAVNYPL---PLADETL-SVVLVSMGNPHCVVLV-DKLDLAQVHRLG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  H +F +  N+    V    +L +  WERG G T A GS++CA+  A   L K + 
Sbjct: 178 PQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGKVDD 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V V M GG L I +  +  V M G   K     LD
Sbjct: 238 RVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
 gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
          Length = 284

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 118/259 (45%), Gaps = 28/259 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+K  G GN  ++ID R   + +  SD    L         D ++L+   +    D  
Sbjct: 16  IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLE--RSDRADFV 73

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +RI N DG+E + CGNG+RC+ +FL    ++   FT E +        + DGS+SV M  
Sbjct: 74  MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133

Query: 123 -PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P + W  I L+     + R  FH+             +  G PHA   VE  L  +DL 
Sbjct: 134 APEISWD-IELS-----IGRKTFHVD-----------FLDTGVPHATLSVE-KLSAFDLD 175

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLES--LDLRTWERGVGL-TAACGSAACASVVASG 237
           + G  +  H  F  +G N+ +  +   +   + +RT+ERGV   T ACG+ A A  + + 
Sbjct: 176 AIGPKIRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAW 235

Query: 238 CLHKTNRAVSVKMLGGGLL 256
              +    + +++  G +L
Sbjct: 236 TKEQIANPIRIQVASGDIL 254


>gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
 gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
          Length = 279

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 46/296 (15%)

Query: 6   VDFAKMEGIGNKILVID-----------MRGCHDNITSDAINALSTDDNTHFDQIMLIHD 54
           ++F K++G GN  +VID            RG         + A  T      D ++LI +
Sbjct: 1   MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHT--GVGADGLILIKN 58

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRD 113
             +   D      N DGS  + CGNG RC VRF   R +      FET+ G++ A+   +
Sbjct: 59  PDNPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYEN 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G          +  +L P ++  +K   +D +   IG            ++ G PH +  
Sbjct: 119 GRK--------VKVQLTPPSKPEEKTLTVDGEEV-IG----------VFINTGVPHFVVP 159

Query: 171 VEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           VED +   ++   G  +  H  F  +G N++  +  S +++ +RT+ERGV   T ACG+ 
Sbjct: 160 VED-VEKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTG 218

Query: 229 ACASVVAS---GCLHKTNRAVSVKMLGGGLL-IEW-HDNNHVFMTGEAKKEWEGKL 279
           A A  + S   G + K  + V+V    G +L I++  D   VF+TG   K +EG+L
Sbjct: 219 ATACAIVSYLKGLVKK--KPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRL 272


>gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029]
 gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029]
 gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN]
          Length = 257

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N DGS    CGNG+RC +  L S+  +   +  T  G+          + VDM
Sbjct: 56  DAQLIIFNSDGSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              + DW+          + R      P+     +    +  G PHA+  +  ++   DL
Sbjct: 116 --TLADWR--------ASVHRLESRPDPLP----KEVVCIHTGVPHAVVILP-EISTLDL 160

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           +  G  L  H  FS +GVN++  ++     L +RT+ERGV G TAACG+ A AS +    
Sbjct: 161 SILGPFLRYHQTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSN 220

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            +    ++ +   GG L+    +   V++ G   ++
Sbjct: 221 SYGWKESIQIHTWGGELMTVSQNRGRVYLQGSVTRD 256


>gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
 gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
          Length = 261

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N DGS    CGNG+RC +  L S+  +   +  T  G+          + VDM
Sbjct: 60  DAQLIIFNSDGSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              + DW+          + R      P+     +    +  G PHA+  +  ++   DL
Sbjct: 120 --TLADWR--------ASVHRLESRPDPLP----KEVVCIHTGVPHAVVILP-EISTLDL 164

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           +  G  L  H  FS +GVN++  ++     L +RT+ERGV G TAACG+ A AS +    
Sbjct: 165 SILGPFLRYHQTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSN 224

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            +    ++ +   GG L+    +   V++ G   ++
Sbjct: 225 SYGWKESIQIHTWGGELMTVSQNRGRVYLQGSVTRD 260


>gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
 gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
          Length = 279

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 14/271 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63
           MV   K  G+GN  L+ D     + +    I  L   +     D I+     ++  +   
Sbjct: 1   MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGILSGPVLENEKIK-- 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVD 119
           +RI N DGSE +  GNG+R   ++L     +K K +   T  G + V   + D S + VD
Sbjct: 59  VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118

Query: 120 MGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG        I  +    D ++   F           N   VSMGNP+ +  +E+   + 
Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFFCDN-----FYNITCVSMGNPNCVVMMEEISKNK 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +     F   +N+ +  V   E++ +  +ERG G T A G+ ACA+  A+  
Sbjct: 174 AL-HLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHK 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           L      V V M GG LL+E+ +++ VFMTG
Sbjct: 233 LGLVGNRVQVHMQGGDLLVEFAEDDRVFMTG 263


>gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
 gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
          Length = 1364

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 15/230 (6%)

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK-ENRDGSI- 116
            DA + + + DG+  +  GN +R V ++L  ++  K+K  + ET  G+   +  +RDG I 
Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200

Query: 117  SVD--MGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            SV+  +G P  D   +P+  + D   +    +  G     F      +S+G+P  +    
Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYSCGG----FDDQITCLSLGDPQCVILT- 1255

Query: 173  DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DD    +L   G L+ +  +F EG N+S   V    +L +RTWER +G T +CG++ CA+
Sbjct: 1256 DDCDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAA 1315

Query: 233  VVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             V +  L   +   +SVK  GG L++       +F+ G    ++EG +++
Sbjct: 1316 AVVAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIEM 1364


>gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8]
 gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8]
          Length = 285

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 32/293 (10%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFET----IRGILVAKENRD 113
           + D  +  +N DGS    CGNG RC+ RF   +  +     F+T     R   V ++N  
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRATTVPEDNPS 124

Query: 114 GS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           G      D+ E   D   + L RS  +               +R       G  H +  V
Sbjct: 125 GVRLFVPDVTEVRAD---VALDRSVPQA--------------VRRLCFAHAGTEHLVAVV 167

Query: 172 EDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
            DDL    +  +G  L + P  +  G N++   +   + L LRT+E+GV   T +CG+  
Sbjct: 168 -DDLDAVPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGV 226

Query: 230 CASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            A+   +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 227 LAAAETAGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864]
          Length = 376

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 130/301 (43%), Gaps = 77/301 (25%)

Query: 47  DQIMLIHDFQDASVDA---------FIRIINCDGSEVQSCGNGMRCVVRF---------- 87
           DQ+++I   Q   +DA          ++I N DGSE  +CGN  RCV +           
Sbjct: 59  DQLLVIA-AQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDA 117

Query: 88  ----------------LTSRMKR------KSFTFETIRGILVAKEN-RDGSISVDMGEPI 124
                             SR  R      +S   +TI    +A++  ++ ++ VDMG P 
Sbjct: 118 RREQVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPE 177

Query: 125 LDWKLIPLAR------SFDKMDRDRFHIGP--VNHLFLRNPFVVSMGNPHAIFFV--EDD 174
            +W  IPL+R      + D +        P  V  L  R    V MGNPH +F +  E+ 
Sbjct: 178 FEWTRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARG-VAVGMGNPHLVFLLPSEEQ 236

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----------LDLRTWERGVGLTAA 224
           L   D+ + G+ L  + +F +GVN++ A +    +          +  + WERG G T A
Sbjct: 237 LNQIDVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLA 296

Query: 225 CGSAACASVVA---SGCL---------HKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEA 271
           CGSAACA + A   +G L         +  N++V SV+M GG L +       + + G +
Sbjct: 297 CGSAACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPS 356

Query: 272 K 272
           +
Sbjct: 357 R 357


>gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 172

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +VID     D    DA  A   D      FDQ++++   +   VD   R
Sbjct: 6   FTKMHGLGNDFMVIDAVS-QDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDFRYR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P
Sbjct: 65  IFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNMGKP 124

Query: 124 ILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNP 157
                 IP      + D    +       I PV+ + + NP
Sbjct: 125 KFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCVNMGNP 165


>gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula]
          Length = 221

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 6/143 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R      I+S+ A+     +     D ++ +    D +
Sbjct: 73  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGIDGT 132

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F   L S   R SFT  T  G +V +   DG++
Sbjct: 133 -DYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191

Query: 117 SVDMGEPILDWKLIPLARSFDKM 139
            VDMGEP+L    +P   S +K+
Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214


>gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
 gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
          Length = 269

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 114/281 (40%), Gaps = 25/281 (8%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K +G GN  L+ D  G    +      A   D +  F    LI   +D      + + N 
Sbjct: 5   KYQGCGNDFLIAD--GSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP---LSMELWNQ 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DG+    CGNG+RC V        RK +  +  R   +   +   S+ +   EP +    
Sbjct: 60  DGTRAGMCGNGLRCFVH----HAYRKGW-IQADRSYRIGTGDGLRSVWICSTEPFI---- 110

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-------MGNPHAIFFVEDDLYHYDLAS 182
             +       D  R    P+    L  PF+         +G PH + F  D       A 
Sbjct: 111 CRVEAGIPDFDAKRMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTDP--EVVSAE 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
               + +HP F EG N+  AR+     L +RTWERGVG T ACG+ ACAS VA+      
Sbjct: 169 QARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGLC 228

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                V+  GG L +E   +    +TG +   + GK ++K 
Sbjct: 229 PLPCKVRCPGGLLDVEQAPDKQCLLTGPSV--YIGKAEVKA 267


>gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 275

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 42/265 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVD 61
           M  +AK+ G GN  LV+D+RG        A  A +    +++   D ++L+     + ++
Sbjct: 1   MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVE--SSSRLN 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKEN----RDGSI 116
             +R+ N DGSE + CGNG RC+ R+   + +      FET+ G + A+ +    R    
Sbjct: 59  FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPFVRLRLA 118

Query: 117 SVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            VD+G+   + K       LA SF                       +++G PH + F+E
Sbjct: 119 EVDLGDATWERKTSAGGQELAYSF-----------------------LTVGVPHCVVFLE 155

Query: 173 D--DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           D       +L   G  L  +  +F  G N++       E L L T+ERGV  LT +CG+ 
Sbjct: 156 DLATRPREELFRLGRELRGRTDLFPRGTNVNFL-APEKEGLFLITYERGVEDLTRSCGTG 214

Query: 229 ACASVVASGCLHKTNRAVSVKMLGG 253
           + A+ V +  L +    V V+ LGG
Sbjct: 215 SVAAAVTARRLGRCGDDVKVRNLGG 239


>gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 279

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 33/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R     D        A+     +   D ++LI + ++A  D 
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSEEA--DF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +  N DGS  + CGNG RC  RF   +  + R+   F T  G L+  E    ++ + M
Sbjct: 63  SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAG-LIEAEISGTAVLLTM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
             P                 R   H+ GP       +   V  G PHA+ F  D++    
Sbjct: 122 TPP--------------GQCRLNLHLAGPTGEELTLH--TVDTGVPHAVLFC-DEIATVP 164

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +G+    HP F+  G N++     +   L +RT+ERGV   T ACG+ A A+ + + 
Sbjct: 165 VKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVAS 224

Query: 238 CLHKTNRAVSVKMLGG-GLLIEWHDNNHVF----MTGEAKKEWEGKL 279
            L +     +V   GG  L+I + D++  F    + G A   ++G L
Sbjct: 225 RLGRAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSL 271


>gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
 gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
          Length = 310

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 111/257 (43%), Gaps = 50/257 (19%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE------- 110
           F+   N DGS  + CGNG+R   R+L      ++      T   +R + +AK+       
Sbjct: 73  FMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRVHIAKDVGDAAQP 132

Query: 111 -----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
                  DG I+V MGE  L     P A     +    +          RN   V+MGNP
Sbjct: 133 GEATAGPDGPITVVMGEATLPGPG-PEAEMTVTVGEQSWP--------ARN---VNMGNP 180

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVG 220
           HA+ FV+      DLA  G+LLA   +     +  G N+          + +R  ERG G
Sbjct: 181 HAVAFVD------DLAQAGDLLAAPAVRPASAYPHGTNVEFVVDRGPRHVAMRVHERGSG 234

Query: 221 LTAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            T +CG+ ACA +VA+      + AV       +V + GG L+I    +  V MTG A  
Sbjct: 235 ETRSCGTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTGPAVI 294

Query: 274 EWEGKLDIKTGKWIKKN 290
             EG+LD     W++ +
Sbjct: 295 VAEGELDP---AWLRTD 308


>gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
          Length = 283

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R       + +D A    +       D +  + D  +  +D 
Sbjct: 8   VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGN  RC  +   +  +      F T  G + AK   DG    D G
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGP---DAG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              +  +L P       +  D  +     H           G PHA+  + DD+   ++ 
Sbjct: 125 R--VKVQLTPPKGLETNISLDVDNTPMTVHF-------ADTGVPHAVV-LVDDVAAVNVR 174

Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  HP F+  G N++ A+V    ++ LRT+ERGV   T ACG+ ACA+ + +  L
Sbjct: 175 ELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLVANAL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T+    +   GG +L  + +NN +F+ G A+  ++G+L
Sbjct: 235 GLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGEL 274


>gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
          Length = 281

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 43/293 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  +++D R      T+ A           F    D ++LI + ++A  D
Sbjct: 5   ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESKEA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
              +  N DGS  + CGNG RC  RF   R +      F T+ GI+ A E    ++ + M
Sbjct: 63  FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEA-EITGTNVGLTM 121

Query: 121 GEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             P    LD +L   A     +           HL       V+ G PHA+  V DD+  
Sbjct: 122 TPPENLQLDLRLDDPAGGEQTV-----------HL-------VNTGVPHAVLLV-DDIDV 162

Query: 178 YDLASFGNLLAKHPMFSE-GVNLS-IARVTSLESL-DLRTWERGV-GLTAACGSAACASV 233
             +  +G     HP F+  G N++ + R T+   L  +RT+ERGV   T ACG+ A A+ 
Sbjct: 163 VPVKEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAA 222

Query: 234 VASGCLHKTNRAVSVKMLGGG---LLIEWH----DNNHVFMTGEAKKEWEGKL 279
           + + CL  T  A   +++  G   L+I +H    D   V + G A   +EG+L
Sbjct: 223 LVASCLDLT--AAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273


>gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 123

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG 220
           MG  H++ FV +D   YD+   G  +  +  +F + VN++  +V   + +++ TWERG G
Sbjct: 1   MGTDHSVIFV-NDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAG 59

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            T ACG+ A AS V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 60  RTLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117


>gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
 gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
          Length = 278

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 127/294 (43%), Gaps = 46/294 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD------------DNTHFDQIMLIHDF 55
           F+K+   GN  +V+D R   D      +N L  D                 D ++LI   
Sbjct: 3   FSKLHASGNDFVVLDNR---DGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESP 59

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG 114
            D       +  N DGS  + CGNG RC VRF   R +  +   FET+ GI+ A+    G
Sbjct: 60  DDPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKG 119

Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + V + +P  D++ + L                V    L   F ++ G PH +  VE 
Sbjct: 120 RRVKVLLTKP-KDYRDVTL---------------DVKGTRLEGSF-INTGVPHFVVRVE- 161

Query: 174 DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
           ++   D+ S G  +  HP F  +G N++  +V     + +RT+ERGV G T ACG+ A A
Sbjct: 162 EIDSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATA 221

Query: 232 SVVAS---GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKL 279
             + S   G +  +   V  K   GG L+  H   D   V++ G     ++G+L
Sbjct: 222 CAIVSYLKGWVKGSPVDVFTK---GGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272


>gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
 gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
          Length = 277

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 41/291 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------ALSTDDNTHFDQIMLIHDFQ 56
           + F KM G GN  ++I+ R    NI  + ++               +   D ++LI   +
Sbjct: 4   IPFFKMNGSGNDFIIINNR---RNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--K 58

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS 115
           D   D   R  N DGSE + CGNG RC  RF   + +   S  F T+ G++ A+     +
Sbjct: 59  DNEYDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNT 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V + +P  D+K        + ++ D   + P++         ++ G PHA++FV    
Sbjct: 119 VRVQLTQP-KDYK--------ENIELDGVDM-PLSF--------INTGVPHAVYFVSSVD 160

Query: 176 YHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              D+ + G     H  F+ EG N++   V +  +L +RT+ERGV   T ACG+ A AS 
Sbjct: 161 -VVDVKTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASA 219

Query: 234 VASGCLHKTNRAVSVKMLGGGLL-----IEWHDNNHVFMTGEAKKEWEGKL 279
           + +    K    V V    G  L     IE  +   V++ G+A   + G +
Sbjct: 220 LIAILKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270


>gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
 gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
          Length = 270

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 127/289 (43%), Gaps = 45/289 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           FAK EG GN  +++D+R       S  I  L    + HF    D +M +     +  D  
Sbjct: 5   FAKYEGAGNDFILLDLRNGGATPQSAEIARLC---DRHFGIGADGLMTLAASAVSGCDCS 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           +R  N DGS  + CGNG RC   F     +   +KR    F++  GI  A+  R     +
Sbjct: 62  MRYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKR----FDSTDGIHEARMLR-----I 112

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D     ++  +I + R  D+ D          + FL        G PH + F  DDL   
Sbjct: 113 DGLRSTVELGMIDVER-IDRGD---------GYWFL------DTGVPHYVEFT-DDLEAV 155

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA-CASVVAS 236
           D+   G  +     F++G N++  +V     + +RT+ERGV   T ACG+ +  A++V  
Sbjct: 156 DVIGRGRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTH 215

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLD 280
                +  A  + + GG L I + +        + ++GEA+K +EG  D
Sbjct: 216 LAAQPSVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264


>gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14]
 gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
          Length = 269

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 19/213 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N DGSE   CGNG+RCV+  +   +  +  + ET+RG+   K      + VDM
Sbjct: 56  DAKLTIFNSDGSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              +LDWK         K  +   H+ P         F +  G PH + FV  D+    +
Sbjct: 116 T--LLDWK---------KTKKTLTHVLPG---MPEEVFFIDTGVPHVVVFV-PDVNKVPV 160

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238
             +G  L  H  F   GVN+   +    ++L + T+ERG    T +CG+   AS + +  
Sbjct: 161 QEWGAFLRYHEDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAAD 220

Query: 239 LHKTNRAVSVKML--GGGLLIEWHDNNHVFMTG 269
           +    +  S+ +    G ++  + +N  VF+ G
Sbjct: 221 VFSLEQDFSLLVCSRSGNIVKIFSENGKVFLEG 253


>gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
 gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
          Length = 276

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 26/243 (10%)

Query: 43  NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102
             H D  + +   Q A  DA + I N DGS    CGNG+RC + +L  ++++   T  T 
Sbjct: 41  QAHVDGFLYLEPSQIA--DAKLAIFNADGSRPTMCGNGLRCAIAYLAQKLEKPQITIATD 98

Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +G+          + VDM  P  +W       +F   +     +G V   F+        
Sbjct: 99  QGVYSGVYFSWERVLVDMTLP--EW-------NFSSHEIVLSGLGKVQVFFIHT------ 143

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL 221
           G PH + F   ++   D+A  G  L  H  F+  G N++   + S + L +RT+ERG+  
Sbjct: 144 GVPHLVVFC-PEIASIDVAVLGRELRYHTTFAPSGANVNFVEIFSEQQLRIRTYERGLER 202

Query: 222 -TAACGSAACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            +AACG+   A+V  +   G + +    V V      + IE      +++ G    E  G
Sbjct: 203 ESAACGTGCIAAVKTALFRGFVKQGEVIVHVSQESMKVFIE---GERIYLEGPVTIESSG 259

Query: 278 KLD 280
           +L+
Sbjct: 260 RLE 262


>gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 292

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 20/271 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIRII 67
           K  G+GN   V D       +T + +  +  D N     D I+    FQ+  +  ++++ 
Sbjct: 8   KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKI--YVKVW 64

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123
           N DGSE +  GNG R   ++L     +++K  TF T+ G I V   N DGS +    G+ 
Sbjct: 65  NPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKL 124

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDL 180
                 IP+         +R  +   + +F R  +    VS+GNPH +  + + +    +
Sbjct: 125 SFWSDEIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+       F   +N  + +V   E++ +  +ERGVG T A GS ACA+   +  L 
Sbjct: 177 CKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLG 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            TN  V+V M GG L +E  D+  VF TGE 
Sbjct: 237 MTNPGVTVHMPGGKLQVEIQDDWEVFATGEV 267


>gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 295

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 39/236 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGS-- 115
           F+   N DGS  + CGNG+R   R+L       S      T   ++ + +A +  DG+  
Sbjct: 79  FMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELAVATRGGVKRVRIAADAPDGTPG 138

Query: 116 -ISVDMGE---PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            ++VDMG    P  D   + +  RS+  ++                   V+MGNPHA+ F
Sbjct: 139 DVTVDMGRAAFPGPDGVTVTVDGRSWPALN-------------------VNMGNPHAVAF 179

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VE DL H          A    + +GVN+          + +R  ERG G T +CG+ AC
Sbjct: 180 VE-DLAHAGHLYEAPATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGAC 238

Query: 231 ASVVAS-----GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A  VA+          T  AV  +V + GG L+IE   +  + MTG A    EG L
Sbjct: 239 AVAVAAIRRDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294


>gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175]
          Length = 248

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 27/170 (15%)

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           CGNG+R V R+L  +        ET++ IL  K  +  S+  D+  P    ++ P+  + 
Sbjct: 1   CGNGLRTVARYLLEKHALTDAKVETMKAILDVK--KATSLGFDI--PTYQVEISPVKFAA 56

Query: 137 DKMDRDRFHIGPVNHLFLRNPFV-----------VSMGNPHAIFFVEDDLYHYD----LA 181
           + +     H+G V  LF  N  +           VS+ NPH I FV+  +   D    LA
Sbjct: 57  ETLP---MHVG-VEKLF--NQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLA 110

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           S+ N  +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A
Sbjct: 111 SYLN--SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSA 158


>gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 291

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 20/271 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIRII 67
           K  G+GN   V D       +T + +  +  D N     D I+    FQ+  +  ++++ 
Sbjct: 7   KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKI--YVKVW 63

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123
           N DGSE +  GNG R   ++L     +++K  TF T+ G I V   N DGS +    G+ 
Sbjct: 64  NPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKL 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDL 180
                 IP+         +R  +   + +F R  +    VS+GNPH +  + + +    +
Sbjct: 124 SFWSDEIPVTG-------ERREVINEDMVFGRTLYPVTCVSIGNPHCVIPMRE-ISKPLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+       F   +N  + +V   E++ +  +ERGVG T A GS ACA+   +  L 
Sbjct: 176 CKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            TN  V+V M GG L +E  D+  VF TGE 
Sbjct: 236 MTNPGVTVHMPGGKLQVEIQDDWEVFATGEV 266


>gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 266

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 120/290 (41%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D     D   +  I           D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDGP-LMDAARARRICDRRR--GVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG----- 114
            A + I N DGS    CGNG+RCV R L  +R        +T  G      +R       
Sbjct: 59  TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVE 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   L+ +               F +G      LR    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAACAS 232
                  + G  L +  +   GVN+  AR      +DL  WERG GLT     G+ A A 
Sbjct: 160 PERARALAVGPALER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
              S  L +    V V++ GG L I    D   V M G A++ + G+ D+
Sbjct: 217 AAVSRGLARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
 gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
          Length = 277

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 36/291 (12%)

Query: 6   VDFAKMEGIGNKILVID----------MRGCHDNITSDAINALSTDDNTHFDQIMLIHDF 55
           + F K+ G GN  L+ID          M+G    +  D    +  D       ++ +   
Sbjct: 8   IPFCKLHGNGNDFLLIDELEGTRIPDQMKGEFAELYCDRRFGVGADG------VLFLSAG 61

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG 114
            +   D  +RI   D SE + CGNG+RC  R+   +    ++   ET  G+L    +   
Sbjct: 62  TEG--DLRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGD 119

Query: 115 SI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           S     + M +P  D   IP   +  +    +   G   H         + G PHA+  V
Sbjct: 120 STFLAQIHMPDPAFDCPGIP---ATGEGVYQQTIAGLTVH-------ATNTGVPHAVVIV 169

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230
            DDL   D+      +  HP F +G N++  +VT  +++ +RT+ERGV   T  CG+ A 
Sbjct: 170 -DDLAAVDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGAT 228

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS   +  L      V+V+  GG L I         M G A   + G++ +
Sbjct: 229 ASAAVAHRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277


>gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922]
 gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922]
          Length = 260

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 62/296 (20%)

Query: 8   FAKMEGIGNKILVIDMRG-------------CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           F K +G GN  +++D R              CH N    A            D ++L+ +
Sbjct: 5   FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGA------------DGLILLQN 52

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD 113
                 D  +R  N DG E   CGNG RC+ +F     + ++  TFE I G+  A     
Sbjct: 53  --SNPYDFRMRYFNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRA----- 105

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
                          + P   + + +D D+  + P +H FL      + G+PH + FV  
Sbjct: 106 --------------VVHPTYVALEMIDVDKVEVYP-SHYFL------NTGSPHHVQFVA- 143

Query: 174 DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
           D+   D+   G  +    P F +G N++   V   ++L +RT+ERGV   T ACG+   A
Sbjct: 144 DVQKIDVQKEGAKIRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTA 203

Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
           + +A+    K ++  + VK +GG L +++   N     V++ G A+  +EG + ++
Sbjct: 204 AAIAAYSAGKVSQLPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLE 259


>gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
 gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
          Length = 279

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 43/286 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------- 55
           + ++F K+ G GN  ++ID       +  + I     D+ +   +I+   +F        
Sbjct: 2   NQLEFVKLHGNGNDFILID------ELNGERI---PEDEKSEASRILCHRNFGIGGDGVL 52

Query: 56  ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKEN 111
                   D  +R+   DGSE + CGNG+RC+ +    S    + F+ ET+ G++  +  
Sbjct: 53  FLVPSERADIGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVR 112

Query: 112 RDGS---ISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           RD       V+MG P  +   IP     +F K+    F +  VN            G PH
Sbjct: 113 RDRKGFWARVEMGIPRFERSEIPADGEGTFLKVPLHGFEVSAVN-----------TGVPH 161

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225
           A+ FVE+      +      +     F EG N++  R+ +   L++RT+ERGV   T +C
Sbjct: 162 AVIFVEN--LDIPVEQIAPKIRHSSCFPEGANVNFVRLGN--HLEVRTFERGVEAETLSC 217

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           G+ + A+   +  L      V V   GG L I +      FM G A
Sbjct: 218 GTGSVAAAAVARRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPA 262


>gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 289

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 108/243 (44%), Gaps = 45/243 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     +        T  G+      +DG ++V M
Sbjct: 71  FMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVHIAKDGDVTVGM 130

Query: 121 GEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+  L    + ++   RS+                  RN   V+MGNPHA+ FV+     
Sbjct: 131 GKAFLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DLA  G+LLA  P      + +GVN+      +   + +R  ERG G T +CG+ ACA 
Sbjct: 167 -DLAHAGDLLAPPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGACAV 225

Query: 233 VV-------ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            V       A   +  T    +V + GG L+I    +  + MTG A    EG++D    +
Sbjct: 226 AVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID---AE 282

Query: 286 WIK 288
           W++
Sbjct: 283 WLE 285


>gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K]
 gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K]
          Length = 266

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 119/293 (40%), Gaps = 40/293 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDNTHFDQIMLIHDFQD 57
           M+   + F K  G+GN  +V+D          DA               D ++ +   + 
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVD------GPLMDAERARRICDRRRGVGADGVLTVLPPRT 55

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG-- 114
           A   A + I N DGS    CGNG+RCV R L  +R        +T  G      +R    
Sbjct: 56  AGATATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADR 115

Query: 115 ---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              ++SV+MG   L+ +               F +G      LR    VSMGNPHA+ F 
Sbjct: 116 AVEAVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF- 157

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAA 229
            D        + G  L +  +   GVN+  AR      +DL  WERG GLT     G+ A
Sbjct: 158 -DAPERARALAVGPELER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACA 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
            A    S  L +    V V++ GG L I    D   V M G A++ + G+ D+
Sbjct: 214 AAVAAVSRGLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
 gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
          Length = 266

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 123/291 (42%), Gaps = 36/291 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M    + F K  G+GN  +V+D      +                 D ++ +   + +  
Sbjct: 2   MHGVPLSFVKYHGLGNDFIVVDGPLMDPDRAR---RLCDRRRGIGADGVLTVLPPRTSGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRG-----ILVAKENRDG 114
            A + I N DGS    CGNG+RCV R L  +R    +   +T  G     +         
Sbjct: 59  AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGLSGALVIDTDSGPKRCVVHRTPAGVPS 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG         P A   D    +    G      +R    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMG---------PAAVQGD----EELRAGGETVRAVR----VSMGNPHAVLF--DT 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                 ++ G LL +      GVN+  AR      +DL  WERG GLT ACG+ ACA+ V
Sbjct: 160 PTRERASAIGPLLER--AVPGGVNVGFAR-PGPHGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 235 AS---GCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
           AS   G + K    V V++ GG L I    D   V M G A + + G+ D+
Sbjct: 217 ASVRAGAV-KAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266


>gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
 gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
          Length = 257

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 126/281 (44%), Gaps = 40/281 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F K +G GN  ++ID R          + AL  D         LI    DA++D  +  
Sbjct: 4   NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLENDATLDFKMVY 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DG+E   CGNG RC+V F     +   + TF+ I G   A    DG +S+ M     
Sbjct: 64  YNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG-VSLKM----- 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                        +D D  ++       L N   ++ G+PH +  VE +L ++++ + G 
Sbjct: 118 -------------IDVDDVNV-------LENYMFLNTGSPHHVQLVE-NLKNFEVFTQGK 156

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
            +       EG N++     S ++  +RT+ERGV   T +CG+   A  +A   LHKTN+
Sbjct: 157 EIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIA---LHKTNK 213

Query: 245 AVSVK---MLGGGLL---IEWHDN--NHVFMTGEAKKEWEG 277
               +   M  GGLL    ++ D   ++VF+ G A   ++G
Sbjct: 214 LKENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKG 254


>gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 270

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 37/285 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCH-----DNIT-SDAINAL-STDDNTHFDQIMLIHDFQDASV 60
           F+K++G GN  ++ID R        DN+    A+  +         D ++LI + + A  
Sbjct: 5   FSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA-- 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D   +  N DGS  + CGNG RCV RF   + +  +   FET+ GI+ A+ N   ++ V 
Sbjct: 63  DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVNVS-TVKVK 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +P  D KL               ++  V+  F      ++ G PH + FV D +   +
Sbjct: 122 LTKP-HDLKL-------------NLNVEGVSGHF------INTGVPHFVVFV-DRIEDVN 160

Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +    +F   G N++      L+ + +RT+ERGV   T ACG+ + AS + SG
Sbjct: 161 VREVGRKIRFSELFQPSGTNVNFVE-AQLDKIFVRTYERGVEDETLACGTGSVASALISG 219

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLD 280
            + K N  + V       L  + D   N VF+ G     ++G L+
Sbjct: 220 KVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264


>gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
 gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
          Length = 288

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 117/283 (41%), Gaps = 27/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           V F KM+G GN  + +D R          D +      A     +     I L H  + A
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGAD---GMIFLDHAPEGA 67

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-I 116
            +       N DGS  + CGNG RC  R      +   S  F T  G + A  + D + +
Sbjct: 68  GLAYIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPIEAAVDPDSNLV 127

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V +  P    K + L    +     R H      + L +   V+ G PHA+ FV D+L 
Sbjct: 128 TVRLTSP----KDLRLNIDMEMEVEGRHH-----QMTLHS---VNTGVPHAVAFV-DNLE 174

Query: 177 HYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D+   G  +  H  F+  G N++   VT    L LRT+ERGV   T ACG+ A AS V
Sbjct: 175 TVDVWQLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            +  L  T    ++   GG  L     +   ++ G A+  + G
Sbjct: 235 IAKELGLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRG 277


>gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 288

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 117/287 (40%), Gaps = 33/287 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI--- 64
           F K  G+GN  LV     CH ++            N H    ML H       D  +   
Sbjct: 6   FHKYHGLGNDYLV-----CHRDVAEQL-------SNEHVQ--MLCHRHYGVGSDGLLIDS 51

Query: 65  --------RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113
                   RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +    + D 
Sbjct: 52  GDQINPTLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDV 111

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ISVDMG    +   +P   +  +         P+    L +  +VSMGNPH +  V D
Sbjct: 112 HQISVDMGRANFNPAALPALVNLPEAVNYPL---PLADETL-SVVLVSMGNPHCVVLV-D 166

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L    +   G  +  H +F +  N+    V    +L +  WERG G T A GS++CA+ 
Sbjct: 167 KLDLAQVHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAA 226

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            A   L   +  V V M GG L I +  +  V M G   K     LD
Sbjct: 227 SAMRRLGMVDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19]
 gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19]
          Length = 279

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 107/237 (45%), Gaps = 43/237 (18%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSE + CGN  RCVV+++T           T+ G     E + G I+V++ E 
Sbjct: 60  MRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRV-EVQGGWIAVEVPEA 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +  K++ L                         + V  G PH +   E D  H     F
Sbjct: 119 EIK-KVVELG------------------------YEVDAGVPHFVRLTERDPIH----DF 149

Query: 184 GNLLAK-HPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           G L  +   +FSE     GVN++ A   S++ L +RT+ERGVG T ACGS   A+ +   
Sbjct: 150 GGLTDEAKTIFSEYEPKGGVNVTYA-APSVDELRVRTFERGVGWTPACGSGVVAASLVYS 208

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            +      VSV+  GG L +   D     + G A+  ++G+L    G W ++N D +
Sbjct: 209 EIFGPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGEL---RGDW-RENTDHQ 259


>gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
 gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
          Length = 355

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 142/343 (41%), Gaps = 71/343 (20%)

Query: 6   VDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDD-----NTHFDQIMLIHD 54
           ++F KM G GN  +V +      + G    +T + I   +T          FDQ+++I D
Sbjct: 13  INFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDD 72

Query: 55  FQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTF--------- 99
              D +    + +INCDG+    CGNG+RC  +++      S+  ++   F         
Sbjct: 73  NPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQI 132

Query: 100 -ETIRGI----------LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
            ET  GI          L  K+N    + V+MG P +   +  + R   K+  ++  I  
Sbjct: 133 IETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIES 192

Query: 149 VNHLF---------LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN-------------- 185
             +           L   +V   GN   +F   +    Y  +S+G+              
Sbjct: 193 YMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISD 252

Query: 186 -LLAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAAC----ASVVAS 236
            + +    F +  N+     +  + L+     R  ERG G T ACG+ AC    +S++  
Sbjct: 253 IIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKG 312

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            C    N  ++V+M GG LLI+W+ NN +F TG A   ++ ++
Sbjct: 313 YC--NENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQI 353


>gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 282

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 126/275 (45%), Gaps = 20/275 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIML-IHDFQDASVDA 62
           F K  G GN  LV D +     +    I  +    + HF    D I++  ++ +D     
Sbjct: 5   FEKYHGNGNDYLVFDTKKFEYELQGSQIREIC---DRHFGVGSDGILMGPYEKEDG---I 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISV 118
           ++RI N DGSE +  GNG+    +FL     +     T  T+ G +      +++G+++V
Sbjct: 59  YVRIFNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+       IP+     ++  +         +       +++GNPH +  + D+L   
Sbjct: 119 AMGKVSYMSDEIPVTGESREVIEEAMEFQGQKVI----TTCLTIGNPHCVI-IRDELVKK 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++ S G ++     F   +N+   +V + E + +  +ERG G T + GS++CA+   +  
Sbjct: 174 EVKSLGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           L  T+R V V M GG + +E  ++   FMT   K+
Sbjct: 234 LGLTDRKVKVHMPGGTVEVEIEEDGMTFMTSHVKR 268


>gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
 gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
          Length = 285

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 16/273 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V   K  G+GN  LV D       +  + +  L  D N       ++      +    +R
Sbjct: 3   VVLEKYHGLGNDYLVFDPNKNEMELNEENVRLLC-DRNYGIGAEGILEGPVFETEQMGVR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMG 121
           I N DGS+ +  GNG R   ++L     +++++F F+T  G I V   N DGS I + +G
Sbjct: 62  IWNPDGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHY 178
           +       IP+         +R  +   + +F RN +    VS+GNPH +  +++   H 
Sbjct: 122 KASFWSDEIPVTG-------ERREVVDEDMVFGRNLYPTTCVSVGNPHCVIPMKEVSKHL 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   GN       F   +N  + +V   E++ +  +ERGVG T A GS+ACA+  A+  
Sbjct: 175 -VCKIGNHSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L  TN  V+V M GG L +E  ++  +F+TGE 
Sbjct: 234 LGLTNPGVTVHMPGGELQVEIQEDWEIFVTGEV 266


>gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
 gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
          Length = 285

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 9/212 (4%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVD 119
           +++ N DGSE ++ GNG+R   ++L     +++K+F   T  G   V   N DGS + V 
Sbjct: 60  VKVWNPDGSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVS 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+       IP+     ++  +    G      L     VS+GNPH +  + + +    
Sbjct: 120 MGKISFWSDEIPVTGEKREVINEDMVFGRT----LYPVTCVSVGNPHCVIPMRE-ISKNI 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+       F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L
Sbjct: 175 VCKIGDYSECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             TN  V V M GG L +E  D+  VFMTG+ 
Sbjct: 235 GMTNNKVIVHMPGGDLQVEVEDDGTVFMTGDV 266


>gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
 gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
          Length = 1430

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 55/328 (16%)

Query: 6    VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
            +DFAKM+  GN  +V +     + I  + ++    D  T      L+   + A  DA +R
Sbjct: 1106 LDFAKMQSTGNDFIVFNAME-QEIINPEGLSVRLCDRRTGIGADSLVLITKSAVADAGMR 1164

Query: 66   IINCDGSEVQSCGNGMRCVVRFL--------TSRMKRK-------SFTFETIRGI--LVA 108
              N DGSE    GN + CV ++L         +R             T ET  G+  L+A
Sbjct: 1165 FFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRLLA 1224

Query: 109  --KENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHI------------------ 146
              +  +  S+ VDMG+P  D   IP  LA S      D   I                  
Sbjct: 1225 YTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENVAS 1284

Query: 147  -----GPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                   V H  L          V+++G PH + F    +   D+   G L   +P F  
Sbjct: 1285 GKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLF-SSFVDKIDVPGVGPLFENNPAFPR 1343

Query: 196  GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC--LHKTNRAVSVKMLGG 253
             +N    RV    SL +R WERG G T ACG+ ACA+ VA+        +  ++VK+ GG
Sbjct: 1344 RINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVRGG 1403

Query: 254  GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L++ +  +  V++TG A   + G+++I
Sbjct: 1404 DLIVNYTGDT-VYLTGGAALVYTGEIEI 1430


>gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 279

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 125/274 (45%), Gaps = 21/274 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIMLIHDFQDASVDAFI 64
           F +  G+GN  LV     CH  + +   N       D +       L+ D  DA + + +
Sbjct: 3   FHRYHGLGNDYLV-----CHHRVAALLSNQQIRRICDRHYGIGSDGLLIDNDDADIPS-L 56

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS--ISVDM 120
           RIIN DGSE +  GNG+R   R+L    R+  + F   T  G  V  E  DG+  + VDM
Sbjct: 57  RIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGG-HVRCEVTDGAHQVIVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       +P +   D+        G  N     +  +VSMGNPH +  V  D    DL
Sbjct: 116 GQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRV--DKLDLDL 169

Query: 181 A-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G+ +    +F +  N+  A+V    ++ +  WERG G T A GS++CA+  A   L
Sbjct: 170 VKQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKL 229

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
              +  V+V+M GG L I +  +  V M G  +K
Sbjct: 230 GLVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQK 263


>gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 301

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 123/310 (39%), Gaps = 55/310 (17%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF--- 63
           DF K E +GN  LVID      + T+D +  ++          +L     D   D     
Sbjct: 4   DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63

Query: 64  ----------IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN 111
                     +RI N DG+     GNG+R   R+L          FT  T  G    +  
Sbjct: 64  TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVR-- 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH--LFLRNPFVV--------- 160
                 +D    ++   L P++ S     RD   +G   H    LR    V         
Sbjct: 122 -----VLDRASGLIRLALGPMSSS----SRD---VGATGHDRPMLRETLRVDGENIEITC 169

Query: 161 -SMGNPHAIFFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
            S GNPH +   E+   +L H    + G  +A HP F   VN+   +V    ++    WE
Sbjct: 170 LSDGNPHCVVVRENVTPELAH----ALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWE 225

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RG G T A GS ACA+  A+  L  T   V+V+M GG L +E   +  V +TG A +   
Sbjct: 226 RGAGYTLASGSGACAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQ--- 282

Query: 277 GKLDIKTGKW 286
               + TG+W
Sbjct: 283 ----VATGRW 288


>gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
 gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
          Length = 260

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 134/290 (46%), Gaps = 44/290 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
            V+F K +G GN  ++ID R   +    + +  +    +  F    D ++L+ +  D+  
Sbjct: 2   QVEFYKYQGTGNDFVMIDNR--SNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSET 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG++   CGNG RC+V F     +     TF    G+  A    D  +S+ 
Sbjct: 58  DFRMVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQ 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M                  +D D       ++ FL      + G+PH +  V DDL HY+
Sbjct: 118 M------------------IDVDEVQKND-SYTFL------NTGSPHHVQIV-DDLEHYN 151

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +    ++ E G N++  +     +  LRT+ERGV   T ACG+ A A  +A  
Sbjct: 152 VKENGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMN 211

Query: 238 CLHKTNR-AVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281
            + +T++ ++++ + GG L++ +     H  N VF+TG AK  ++G ++I
Sbjct: 212 AIGQTDKTSINLNVEGGKLVVSFDKLGDHFTN-VFLTGPAKFVFKGIIEI 260


>gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
 gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
          Length = 289

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 108/243 (44%), Gaps = 45/243 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     +     T  T  G+     ++DG ++V M
Sbjct: 71  FMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVHIDKDGDVTVGM 130

Query: 121 GE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G    P  D  +    RS+                  RN   V+MGNPHA+ FV+     
Sbjct: 131 GGARLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DLA  G+LL+  P      + +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 167 -DLAQAGDLLSPPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 225

Query: 233 VVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            VA+         +  T    +V + GG L+I    +  + MTG A    EG++D    K
Sbjct: 226 AVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID---AK 282

Query: 286 WIK 288
           W++
Sbjct: 283 WLE 285


>gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
 gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
          Length = 298

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 24/237 (10%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKS------FTFETIRGILVAKENR 112
           D  +RI N DGSE +  GNG+R   R+L  T R+++ S       T ET  G  V  E R
Sbjct: 59  DCGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGG-HVRSEIR 117

Query: 113 DGS--ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNP 165
           D    I V+MG    +   IP  LA         R  I     +  R  F     ++GNP
Sbjct: 118 DAGRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDRE-FTFCAATIGNP 176

Query: 166 HAIFFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H +  + +   +L H     +G  L  HP F    N+   ++    ++ +  WERG G T
Sbjct: 177 HCVLPLPEVSAELAH----KYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYT 232

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            A GS++ A+   +  L   + +V+V M GG + IE  D+  + MTG   K  EG +
Sbjct: 233 LASGSSSSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289


>gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
 gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
          Length = 272

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +H    +  DA + I N DGS    CGNG+RCV+ +L+S ++++  + ET  G+   K 
Sbjct: 55  FLHVLPSSIADAKLIIFNDDGSRPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKF 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                + VDM  P   ++   L  +   + ++ F I                G PH I F
Sbjct: 115 YSWDRVVVDMTLPNWKYRSHQLTHTLSDLPKEVFSI--------------DTGVPHVIVF 160

Query: 171 VEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV 219
           VE DL    +  +G+ L  H  F+ +G N++  +      + +RT+ERG+
Sbjct: 161 VE-DLSSVPVNLWGSFLRYHEDFAPQGTNVNFVQAQDFREIHMRTYERGL 209


>gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
 gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
          Length = 289

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 26/232 (11%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
           A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      ++G 
Sbjct: 66  AEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIAKNGD 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V MG  +L    + ++    +                RN   V+MGNPHA+ FV D  
Sbjct: 126 VTVGMGRALLPAGDVEVSVGEREWP-------------ARN---VNMGNPHAVAFVADLD 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           +  DL +  +  A    + +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 170 HAGDLYAPPS-HAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228

Query: 236 SG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +            T    +V + GG L+I    +  + MTG A    EG+ D
Sbjct: 229 TARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD 280


>gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 98

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKS----FTFETIR 103
           M++HD      DAF+RI N DGSE  +CGNG RCV   L     M R S     T ET  
Sbjct: 1   MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLA 133
           G++  K   D S +VDMG+P L W  IPLA
Sbjct: 61  GLVAVKRITDRSFTVDMGQPRLRWDEIPLA 90


>gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
 gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
          Length = 260

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 121/289 (41%), Gaps = 41/289 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           S + F K +G GN  ++ID R    +     +  L  D         LI      + D  
Sbjct: 2   SHIHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENHPTADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+VRF     +  +  TFE I G+  AK             
Sbjct: 62  MVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAK------------- 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVEDDLYHYDLA 181
            ++D   I L  S             V  + + N +V +  G+PH +   E +L   D+ 
Sbjct: 109 -VIDATAISLQMS------------DVTEMRIENSYVYTNTGSPHHVQLTE-NLADLDVY 154

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
             G  L  +     G N++  ++T  E+  +RT+ERGV   T +CG+   A  +A   +H
Sbjct: 155 QEGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIA---MH 211

Query: 241 KTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
           KTN      V ++  GG L + +  +     ++++ G A   ++G   I
Sbjct: 212 KTNHTNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260


>gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24]
          Length = 289

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 26/232 (11%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
           A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      ++G 
Sbjct: 66  AEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIAKNGD 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V MG  +L    + ++    +                RN   V+MGNPHA+ FV D  
Sbjct: 126 VTVGMGRALLPAGDVEVSVGEREWP-------------ARN---VNMGNPHAVAFVADLA 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           +  DL +  +  A    + +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 170 HAGDLYAPPS-HAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228

Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +      + A        +V + GG L+I    +  + MTG A    EG+ D
Sbjct: 229 TARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD 280


>gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 277

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 114/257 (44%), Gaps = 30/257 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           F K+ G GN  +++D R        ++ S  + A +       D ++LI + Q+   D F
Sbjct: 6   FWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEG--DLF 63

Query: 64  -IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R+ N DGSE + CGNG RC  R L    +      F T  G + A+   +  + ++MG
Sbjct: 64  RMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGE-RVRLEMG 122

Query: 122 EPILD--WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177
           E  L+  W        FD+   DR         FL       +G PHA+ + +   D+  
Sbjct: 123 EIDLEEAW--------FDEPLEDRDLPPGTRWSFLH------VGVPHAVLWADSWQDVSE 168

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             L   G     HP   +G N++ A      +L +RT+ERGV   T +CG+ +CA  V +
Sbjct: 169 GTLRWIGKKYRHHPRCPQGANVNFA-APEEGALRVRTYERGVEDFTDSCGTGSCACGVVA 227

Query: 237 GCLHKTNRAVSVKMLGG 253
             L      V V+  GG
Sbjct: 228 -VLRGGPSPVEVRTPGG 243


>gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
 gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
          Length = 268

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 123/283 (43%), Gaps = 35/283 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K+ G GN  +++D R     + + AI AL T       D ++LI   + AS     
Sbjct: 5   IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETASFSMLY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM-GEP 123
              N DG     CGNG RC V F  S               +  + +  G    +  G+P
Sbjct: 65  H--NADGLPGTMCGNGGRCAVWFARS---------------IGVQPDAGGCFRFEANGDP 107

Query: 124 ILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              W    + + L     +  RD   +G     F      +  G+PHA+   E  L   D
Sbjct: 108 YQAWVSGPETVRLRMREPRGIRDEIDLGGQYCAF------IDTGSPHAVIRTE-GLDAVD 160

Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  +  +F  G N++   VT+ +S+DLRT+ERGV   T ACG+ A A+ + S 
Sbjct: 161 VVGEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSR 220

Query: 238 CLHKTNR-AVSVKMLGGGLL--IEWHDNNHVFMTGEAKKEWEG 277
            L  T+  ++ V++  G +L      D   V++TG A   + G
Sbjct: 221 RLGMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTG 263


>gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 281

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 24/277 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           S +   K  G+GN  L+ D +     +    I  L   +     D I+     +D  +  
Sbjct: 2   SEIILRKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118
            +RI N DGSE +  GNG+R   R+L     +K + +   T  G  LV   +  GS + V
Sbjct: 61  -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172
           DMG  + + + IP A  F+         G V    +F  + F     VSMGNP+ +  +E
Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +        G  +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+
Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
             AS  L     AV+V M GG L IE+  +  +FMTG
Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265


>gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 281

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 24/277 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           S +   K  G+GN  L+ D +     +    I  L   +     D I+     +D  +  
Sbjct: 2   SEIILRKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISV 118
            +RI N DGSE +  GNG+R   R+L     +K + +   T  G  LV   +  GS + V
Sbjct: 61  -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172
           DMG  + + + IP A  F+         G V    +F  + F     VSMGNP+ +  +E
Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +        G  +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+
Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
             AS  L     AV+V M GG L IE+  +  +FMTG
Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265


>gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
 gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
          Length = 285

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 18/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM---LIHDFQDASVD 61
           +   +  G+GN  LV D       +  + +  L   +     D I+   L+ + Q A   
Sbjct: 3   ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGILEGPLMEEKQMA--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-IS 117
             +RI N +GS  +  GNG+R   ++L     +++K +T  T  G + +   N +GS + 
Sbjct: 60  --VRIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLK 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+       IP+     ++  +    G      L     VS+GNPH +  +++ +  
Sbjct: 118 VSMGKLSFWSDEIPVIGERRQVINEDMVFGRT----LYPATCVSIGNPHCVIPMQE-ISE 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G    +   F   +N  +  V  + ++ + T+ERG G T A G+ ACA+   + 
Sbjct: 173 PLVCKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAY 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
            L  T+  V V M GG L +E  D+   +MTG+
Sbjct: 233 KLGLTSNKVIVHMPGGELQVEIGDDWEAYMTGD 265


>gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 269

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 25/217 (11%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F K  G GN  ++ D R      +   I  L         D I+L+ +   A   A +R
Sbjct: 4   SFTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIA--HARMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP- 123
           I N DGSE + CGNG+RC++ ++ S  +    ++ ET   +L A ++   +I+++MG P 
Sbjct: 62  IFNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSAS-NITIEMGSPN 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  +P++      +   +++  +N            G PH I F E ++  + L   
Sbjct: 121 KLNWN-VPIS-----FESKIYYVHSLN-----------TGVPHIILFAE-NIEQFPLERM 162

Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219
           G  +  HP++  +G N SI +    ++  +RT+ERGV
Sbjct: 163 GPFIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGV 199


>gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 268

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 112/281 (39%), Gaps = 27/281 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           + F K  G  N  L    R        +A+     D +T    D  ML+    DA  +  
Sbjct: 3   IPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAEGT 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKE-NRDG---SISV 118
           I++ N DGS  +  GNG RC   FL    M        T  G+   +   R G      +
Sbjct: 63  IQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQFEM 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG   +  K   L  + ++ D        V  L++        GNP     VE   + +
Sbjct: 123 NMGRAEIAEKRFELQVTGERRD--------VTLLWV--------GNPQCAVPVEH--FDF 164

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D  + G  + +HP F    N+S  R     ++D+R WERG G T + G+ +  +   +  
Sbjct: 165 DWRTLGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMAVA 224

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +  V V+   G + + +  +  +F+TG A+   EG+ 
Sbjct: 225 RGLASSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263


>gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
 gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
          Length = 269

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 41/288 (14%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNI-----TSDAINAL-STDDNTHFDQIMLIHDFQDA 58
           + FAK++G GN  ++I+ + G  D         +A+  + S       D ++L+ D   A
Sbjct: 3   LKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDSTVA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117
             D   R  N DGS  + CGNGMRC  RF+    +       ET+ G+          + 
Sbjct: 63  --DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGV----------VE 110

Query: 118 VDMGEPILDWKLI-PLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             +  PI+   L  P   + + K+D    H              ++ G PHA+ FVE   
Sbjct: 111 AFVYGPIVKVGLTKPRELALNLKVDGLTVHF-------------INTGVPHAVIFVERA- 156

Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              ++   G  +  HP+F+  G N++   V  L+ + +RT+ERGV   T ACG+ + AS 
Sbjct: 157 DAVNVKEIGRKVRFHPLFAPAGTNVNFVEV-RLDRIVVRTYERGVEDETLACGTGSVASA 215

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279
           + +  + K +  V V++  G  L    D   + V++ G  K  ++G L
Sbjct: 216 LIAAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDGLL 263


>gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 281

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 124/277 (44%), Gaps = 24/277 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           S +   K  G+GN  L+ D +     +    I  L   +     D I+     +D  +  
Sbjct: 2   SEIILGKYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILYGPVMEDKKIK- 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG--ILVAKENRDGSISV 118
            +RI N DGSE +  GNG+R   R+L     +K + +   T  G  ++   ++    + V
Sbjct: 61  -VRIFNPDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPV--NHLFLRNPFV----VSMGNPHAIFFVE 172
           DMG  + + + IP A  F+         G V    +F  + F     VSMGNP+ +  +E
Sbjct: 120 DMGYAVFEAEQIP-ALGFE---------GEVVGESIFFCDNFYNATCVSMGNPNCVIMLE 169

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +        G  +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+
Sbjct: 170 R-VDREKALHLGPYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAA 228

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
             AS  L     AV+V M GG L IE+  +  +FMTG
Sbjct: 229 AAASHRLGLVEDAVTVHMHGGDLFIEFEKDGRIFMTG 265


>gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec]
 gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec]
          Length = 307

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 39/283 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM--LIHDFQDASVDA 62
           V F K  G GN  L++       +++ + + AL         D ++  ++   + A+ D+
Sbjct: 11  VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70

Query: 63  -----FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DGS  + CGNG+R   R+L              T  G+   +    G 
Sbjct: 71  AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130

Query: 116 ISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           ++V+MG P L    +P+    R F  +                    VSMGNPHA+ F  
Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREFAAVP-------------------VSMGNPHAVCFA- 170

Query: 173 DDLYHYDLASFG--NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           DDL    LA             F EGVN+ +  V + + + +R +ERGVG TA+CG+ AC
Sbjct: 171 DDLDPAGLARLDLRAPAYPAAAFPEGVNVEVV-VPAPDGVAMRVFERGVGETASCGTGAC 229

Query: 231 ASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEA 271
           A  VA    +       V V + GG L + W ++  V ++G A
Sbjct: 230 AVAVAWAARNGDGPPAEVEVDLPGGRLTVGWREST-VLLSGPA 271


>gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265]
 gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265]
          Length = 268

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 122/285 (42%), Gaps = 33/285 (11%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61
           ++ + F+K+ G GN  +VID R    +++   I  +         D ++LI     AS D
Sbjct: 2   TAEIPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIE--PSASAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             ++  N DG     CGNG R  V F  S              I +  E   G      G
Sbjct: 60  FMMKYHNADGHPGSMCGNGGRAAVWFAHS--------------IGIPFEQEGGCRFEAGG 105

Query: 122 EPILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            P   W    + + L     K  RD    G     F      V  G+PHAIF+    L  
Sbjct: 106 NPYRAWITASETVRLQMLEPKGFRDNIKTGGGACHF------VDTGSPHAIFYTTG-LDG 158

Query: 178 YDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D+   G  +  +  +F  G N++   VT+ +S+ LRT+ERGV   T ACG+ A AS + 
Sbjct: 159 VDVVGRGGEVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALM 218

Query: 236 SGCLHKT-NRAVSVKMLGGGLL-IEW-HDNNHVFMTGEAKKEWEG 277
           S  L  T +  + V++  G  L + +  D   +F+TG A+  + G
Sbjct: 219 SHRLGMTPSTTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRG 263


>gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
 gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
          Length = 256

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 36/238 (15%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGI 105
           D ++L+ +  D S D  +   N DG++   CGNG RC+V F     + +   TF  I G+
Sbjct: 44  DGLILLEN--DQSTDFKMVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGL 101

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
             A  N +  IS+ M       K +      D            N++FL      + G+P
Sbjct: 102 HHATINENDIISLQM-------KNVEEVNIHD------------NYVFL------NTGSP 136

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTA 223
           H + F  D+L ++D+ + G  +    ++ + G N++    TS     +RT+ERGV   T 
Sbjct: 137 HHVQFA-DNLSNFDVKNEGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETL 195

Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276
           +CG+ A A+ +A     KTN   +++ + GG L + ++  N    ++F+ G A+  +E
Sbjct: 196 SCGTGATATAIAMKATGKTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFE 253


>gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
 gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
          Length = 289

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 39/240 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     ++       T  G+  A  ++DG ++V M
Sbjct: 71  FMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAHLDKDGDVTVGM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G        +P       +D   +          RN   V MGNPHA+ FV+      DL
Sbjct: 131 GR-----ARLPEGEVTVSVDGRTWP--------ARN---VDMGNPHAVAFVD------DL 168

Query: 181 ASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           A  G LLA  P+     + +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 169 AHAGELLAPPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVAVA 228

Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           +      +  V       +V + GG L+I  +    + MTG A    EG++D    +W++
Sbjct: 229 AARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEIDE---EWLR 285


>gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
 gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
          Length = 260

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 34  AINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK 93
            I+AL  ++    D  +L+     +  DA + I N DGS  + CGNG+RCV+  L+S +K
Sbjct: 33  TISALCKEEQV--DGFLLV--LPSSVADAKLIIFNDDGSRPKMCGNGLRCVIAHLSSVLK 88

Query: 94  RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
           ++  + ET  GI   K      + VDM  P   ++   L  +  ++ ++ F I       
Sbjct: 89  KEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCHNLTYTIAQLPQEIFSI------- 141

Query: 154 LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDL 212
                  + G PH + FV DD+    +  +G+ L  H  FS EG N++     S     +
Sbjct: 142 -------NTGVPHLVVFV-DDVSCIPIDLWGSFLRYHADFSPEGANVNFIEAMSSREFRI 193

Query: 213 RTWERGV 219
           RT+ERG+
Sbjct: 194 RTYERGL 200


>gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 286

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 120/280 (42%), Gaps = 11/280 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
           S  + F KM G GN  +V+D+R      + D   AL+ D +T    D I+ I   +  + 
Sbjct: 2   SPTLAFTKMHGCGNDFVVLDLRDA-PAPSPDLCRALA-DRHTGVGCDLILGIRPPRSTTA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            A   I   +G     CGNG RCV  +L      +  SF  ++  G    K   D   S+
Sbjct: 60  VAAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSI 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            +  P    + IPL        RD ++   +           S GNPHA+  V DD+   
Sbjct: 120 GLTVPRFAPEEIPLT---GFAGRDGWYEAVLADGTSVRFAAASTGNPHAVLEV-DDVGGG 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A  G  +   P     VN+  A V + + + LR  E G G T ACGS ACA+      
Sbjct: 176 SVARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIR 235

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
             +  R V+V++ GG L + W  +   + + G A   +EG
Sbjct: 236 AGRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275


>gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1]
 gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1]
          Length = 286

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 21/284 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF---DQIMLIHDFQDASVDAFI 64
           + K   +GN  +V+D R       +  I+ +    + +F      +L         +  +
Sbjct: 3   YHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDGILWGPLPSKQSEFGL 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL--VAKENRDGSISVDM 120
           RI N DGSE +  GNG+R   RFL  +  ++  +FT ET  G +  V KEN    I+V M
Sbjct: 63  RIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKEN-GRLITVAM 121

Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDL 175
           G    D   IP  LA +  ++  ++  +      +       ++GNPH +     +  ++
Sbjct: 122 GRVSFDSAKIPVNLAGAAREVINEKLTVLDREFTYC----AATIGNPHCVIPLAEISPEI 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H     +G  +  HP F    N+   RV   +++ L  WERG G T A GS++ A+   
Sbjct: 178 AH----RYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAV 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L   +R V+V M GG + IE   +  + MTG   K  EG +
Sbjct: 234 AHRLGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277


>gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
 gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
          Length = 270

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 125/289 (43%), Gaps = 34/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  ++I+       ++ + +  L    N  F    D ++L++   D    
Sbjct: 3   IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLC---NRRFGIGADGLILLNPPADEFAQ 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
           A +   N DG  V  CGNG RC   F            TF+T  G + A + +DG  ++ 
Sbjct: 60  ATMVYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKA-DAQDGEFTIR 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  P+ D +L            D+    P  H      F ++ G  H I F  DD+   D
Sbjct: 119 M-TPMHDLRL------------DQTLSTP--HGSFEYHF-MNTGVEHVIVF-RDDVDQVD 161

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           + S G+ +  H  F  +G N + A +     + +RT+ERGV   T ACG+   A  +A+ 
Sbjct: 162 IKSEGSSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAA 221

Query: 238 CLHKTNRAVSVKMLGG-----GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                   VS+ + GG     G  ++  + +++ +TG AK  + G  ++
Sbjct: 222 LKGMAKAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270


>gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
 gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
          Length = 273

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 43/291 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINA------LSTDDNTHFDQIMLIHDFQDAS 59
           + F KM+G GN  ++ID R    +  SD   A       +       D ++ +     A+
Sbjct: 4   IPFWKMQGSGNDFVLIDHR---RSFISDGERAGFARKVCAPKFGVGADGLIFLES--SAT 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           VD   R  N DGSE + CGNG RC  RF     +  +   FET+ G++ A E  D  + +
Sbjct: 59  VDFRWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHA-EVLDRRVKL 117

Query: 119 DMGEP-ILDWKL-IPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++  P  L   L IPL A+++              H        ++ G PH +  +  DL
Sbjct: 118 ELSPPHGLRLGLEIPLSAKTW------------TGHF-------INTGVPHVVLPLA-DL 157

Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
               +   G  +  H +F   G N++  R +    L +RT+ERGV   T ACG+ + A+ 
Sbjct: 158 EAAPVTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAA 217

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279
           + +  L      V V    G  L  + D        VF+ G A   ++G+L
Sbjct: 218 LIASRLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268


>gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 273

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 31/266 (11%)

Query: 3   SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S  V+F K++G GN  L +D          ++   A+ A     +   D ++++   + A
Sbjct: 2   SHWVEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA 61

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRDGS 115
                +RI N DGSE   CGNG RC   ++R+L   ++     F T  G + A  +RD +
Sbjct: 62  YR---MRIFNADGSEADMCGNGARCFAMMLRWLG--LEDPEMEFLTNVGPVRAHVHRDST 116

Query: 116 ISVDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
           +S+ MG  P  +  L  ++    +++ + +++               +G PH + + +  
Sbjct: 117 VSLHMGFNPFGEGALFRVSERVGEVEAEMWYL--------------HVGVPHLVLWADRW 162

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           DL      S G      P F  G N++     S   L   T+ERGV  LT +CG+ ACA 
Sbjct: 163 DLREDGFRSLGARYRHDPRFPRGTNVNFVS-PSEGGLTCITYERGVEDLTLSCGTGACA- 220

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE 258
           V AS  +      V V+  GG  L+E
Sbjct: 221 VAASAVMRGMGSPVRVESPGGYNLVE 246


>gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1]
 gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1]
          Length = 269

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 43/291 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           ++  ++ F K +G GN  +++D R  HD    +    +    +  F    D ++L+ +  
Sbjct: 8   IEEMILSFYKYQGTGNDFVLVDNR--HDIFPKNNTKLIRKLCDRKFGIGADGLILLEN-- 63

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115
           D + D  +   N DG+E   CGNG RC+V F     + ++  TF  I G   A      S
Sbjct: 64  DETYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYA------S 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I  D+    L  + +    + D+            H+FL        G+PH + F E+ +
Sbjct: 118 IEADVVN--LQMQDVTTIENHDE------------HVFL------DTGSPHHVTFKEE-I 156

Query: 176 YHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
             +D+   G  +    P F EG N++  +  S     +RT+ERGV   T +CG+   A  
Sbjct: 157 SQFDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVA 216

Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
           +A   L +T+   V++++ GG L + +        ++F+ G+A + ++G++
Sbjct: 217 LAMHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEI 267


>gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 266

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 27/217 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F+K  G GN  ++ID R     D   S              D ++L+     A  D  +R
Sbjct: 5   FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I N DG E + CGNG+RC+V+F     +++K +T +T+  +L A    D SI++ M +P 
Sbjct: 63  IFNADGYETEMCGNGIRCLVKFAQEIGIQKKHYTIQTMHSLLEAFPFGD-SITISMTDPA 121

Query: 125 -LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            ++W          +++ D+          L     V  G PHA+ FV D+L      + 
Sbjct: 122 EIEWD--------TQIEVDQT---------LLTVHWVDTGVPHAVIFV-DELEEARWMTL 163

Query: 184 GNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV 219
              +  HP FS +GVN++ A++   E + LRT+ERGV
Sbjct: 164 APKIRAHPHFSPKGVNVNFAQIKK-EEISLRTYERGV 199


>gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245]
 gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245]
          Length = 272

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 33/289 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
            + F K+ G GN  +VID R    ++++  I A+ T       D ++LI   +    D  
Sbjct: 2   QIHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDFS 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +   N DG     CGNG RC V F          +  ++FE       A      ++ + 
Sbjct: 60  MNYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRLH 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178
           M +P  D++       F                   N   V+ G+PHA+ ++E   L   
Sbjct: 120 MLDP-EDFRNAVAVEGF-------------------NCHYVNTGSPHAVIYIESRKLEAL 159

Query: 179 DLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D++  G  +  +  +F  G N++   +T+ +S+ +RT+ERGV   T ACG+ A A+ + S
Sbjct: 160 DVSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALMS 219

Query: 237 GCLHK-TNRAVSVKMLGGGLL--IEWHDNNHVFMTGEAKKEWEGKLDIK 282
             L K ++  V VK+  G  L      D   V +TG AK  + G  +++
Sbjct: 220 FRLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQ 268


>gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
 gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
          Length = 301

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 128/307 (41%), Gaps = 47/307 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASV 60
           V+F KM G GN  ++ID R     +    + AL+        +   D ++++   Q   V
Sbjct: 20  VEFCKMTGTGNDFILIDNR--RARLAPALMPALAKALCCRRRSVGADGLIVLSPSQ--RV 75

Query: 61  DAFIRII-------NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR 112
           DA +  I       N DGS  + CGNG RC  RF  S  +      F+T+          
Sbjct: 76  DAALGKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIGLAGPELIFDTL---------- 125

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G I   +G   +  +L P    +D +   R  IG            V+ G PHA+  V 
Sbjct: 126 AGPIRAWVGRQTVTLELTPPTGWYDDL---RLEIGGRTMTI----HGVNTGVPHAVVPV- 177

Query: 173 DDLYHYDLASFGNLLAKHPMFSEG---VNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           DDL   D+ ++G  +  H  F+     VN   AR   LE   +RT+ERGV   T ACG+ 
Sbjct: 178 DDLSSADVKNWGREIRFHRHFAPAGTNVNFIAARHGRLE---VRTYERGVEDETLACGTG 234

Query: 229 ACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
           A AS + +G L      ++V +  G  L I +  +      V + G A   ++G L    
Sbjct: 235 AVASALMAGRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGA 294

Query: 284 GKWIKKN 290
             W+   
Sbjct: 295 FAWLANQ 301


>gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
 gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
          Length = 258

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 40/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAF 63
           V F K +G GN  ++ID R     I +  + A   D       D ++L+ + +    D  
Sbjct: 3   VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N +G E   CGNG RC V+F       +  T F  + G   AK   DG + + MG 
Sbjct: 61  MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHETHFIAVDGPHDAKV-EDGLVHLKMG- 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              D + +                  ++H FL        G+PH + FV ++L  +D+ +
Sbjct: 119 ---DVQTVE---------------NNLDHYFL------DTGSPHYVQFV-NNLPQFDVFA 153

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +  +  F E G N++       + + +RT+ERGV   T +CG+   A+ + SG L 
Sbjct: 154 EGKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQ 212

Query: 241 KTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281
           + N  +++K LGG L I +      +  ++++ G A+  +EG + +
Sbjct: 213 QMNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258


>gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 266

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 120/290 (41%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D     D   +  I           D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDGP-LMDAARARRICDRRR--GVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG----- 114
            A + I N DGS    CGNG+RCV R L  +R        +T  G      +R       
Sbjct: 59  AATMHIFNSDGSVAAMCGNGIRCVARHLADARGLDGDLVLDTDSGPKRCTIHRGPGGAVE 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   L+ +               + +G      LR    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMGPARLEGE-------------QEYRVGGEALRALR----VSMGNPHAVLF--DA 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT--AACGSAACAS 232
                  + G  L +  +   GVN+  AR      +DL  WERG GLT     G+ A A 
Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFAR-PGPSGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
              S  L +    V V++ GG L I    D   V M G A++ + G+ D+
Sbjct: 217 ASVSRGLARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 254

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 108/266 (40%), Gaps = 38/266 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
             K+ G GN  LV         +    + AL    N      ++  D  DA V     + 
Sbjct: 3   LTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHDAMV-----LY 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISVDMGEPILD 126
           N DGS  +  GNG+RC+   +T         FET  G  + +   R+G   +        
Sbjct: 58  NADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGREGGSVLGA------ 111

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--FFVEDDLYHYDLASFG 184
                              +GPV+       + V  GNPH +       +L   D+AS G
Sbjct: 112 -----------------TTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVASLG 154

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA---SGCLHK 241
                H  + +GVN+  A V + + + +R +ERGVG T ACG+ + A  VA   +G + +
Sbjct: 155 RCAQAH--YPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLVER 212

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFM 267
           T+  V V+  GG L +E  +   V +
Sbjct: 213 TS--VRVRNPGGALTVEVTEPEPVLV 236


>gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
          Length = 286

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 93/221 (42%), Gaps = 23/221 (10%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R    +L      +       T  G+       DG ++VDM
Sbjct: 79  FMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRVTVDM 138

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G   L               R R  +G  N   +     V +GNPH     E DL   DL
Sbjct: 139 GPAAL-------------FGRSRTAVGKENFPGV----AVDLGNPHLACVTEADLDGLDL 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-GCL 239
           +S      +  +F +GVN+   + T    + +R +ERGVG T +CG+   A+ VA+    
Sbjct: 182 SSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAALDAD 239

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             T     V + GG + +E  +     +TG A     G+LD
Sbjct: 240 GATTGHRIVDVPGGTVEVEVTEQTST-LTGPAVLVAAGRLD 279


>gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17]
 gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17]
          Length = 311

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 36/236 (15%)

Query: 68  NCDGSEVQSCGNGMRCVVRF---------LTSRMKRKSFTF----ETIRGILVAKENRDG 114
           N DGSE ++C NG+RCV R           T R+K    T     + + G+   +E    
Sbjct: 67  NSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYTVRET--- 123

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                 G   L     P+  + D++  D   +      F      V+M NPH + FVE  
Sbjct: 124 -----AGPAGLSTAAWPIHGAPDRLVEDVLPMLDRARRFT----AVTMPNPHLVHFVET- 173

Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +   +L   G +    P    +  N+S   V   ++L +RT+ERGVGLT +CGSA  AS 
Sbjct: 174 VDEAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAAST 232

Query: 234 VASGCLHKTNR----AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284
            A+ CL  T R    + +V    GGL+  +  ++  V ++G A  EW G +++  G
Sbjct: 233 YAA-CL--TGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285


>gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
 gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
          Length = 280

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 128/295 (43%), Gaps = 45/295 (15%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHF----DQIMLIHDF 55
           +Q   + F K +G GN  +++D R    D+     I  +    N  F    D +M +   
Sbjct: 12  LQYMKLKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGIC---NRRFGVGGDGMMFLQ-- 66

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDG 114
           Q    D  +   N DG     CGNG RC+V F        S T F  + G   AK +  G
Sbjct: 67  QKDGYDFEMVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSG 126

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                      DW  + +  + D + +D               +V++ G+PH +  V DD
Sbjct: 127 -----------DWVSLQMI-NVDVIKKD------------GEDYVLNTGSPHYVRLV-DD 161

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           L + D+   G  +  +  + ++G+N++       + L +RT+ERGV   T ACG+   A 
Sbjct: 162 LQNVDMYEEGRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAV 220

Query: 233 VVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281
            +A          +S  VK+LGG L I +  +      +F+ G AKK +EG+LD+
Sbjct: 221 ALAMAKYQNRTGEISTPVKVLGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDL 275


>gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
 gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
          Length = 256

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 48/289 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K +G GN  ++ID R        D IN +S   + HF    D ++LI +  D ++D
Sbjct: 3   LNFYKYQGCGNDFVMIDNRS--QTFNKDTINTISKLCDRHFGIGADGVILIEN--DLALD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DGSISV 118
             +   N DGS+   CGNG RC V            +F    GI+  + N    DG+   
Sbjct: 59  FKMVYYNPDGSQT-FCGNGGRCAV------------SFAHFLGIIKNETNFTAFDGTHFS 105

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            +   I+  K+I ++                +   L     ++ G PH +  V D L ++
Sbjct: 106 KIKNNIVSLKMIDVS----------------DIQILEQAVFLNTGTPHHVQVVTD-LSNF 148

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           D+   G  + ++   S G N++     +  +  +RT+E+GV   T ACG+   A  +A  
Sbjct: 149 DVFREGEKI-RYTYKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMH 207

Query: 238 CLHKTNR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
              KTN  ++++ + GG L + + +      ++F+ G A   ++GK++I
Sbjct: 208 KTKKTNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256


>gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 304

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 101/238 (42%), Gaps = 35/238 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKEN------ 111
           F+   N DGS  + CGNG+R   R+L      ++      T   +R I +AK++      
Sbjct: 73  FMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIAKDDLGGTDA 132

Query: 112 RDGSISVDMGEPILDWKLI--PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             G+++V MG+  L       P+  +  +      H  P  H        V MGNPHA+ 
Sbjct: 133 PGGAVTVQMGKATLPEPGADGPVTVAVGE------HSWPARH--------VDMGNPHAVA 178

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV DDL           +     +  G N+          + +R  ERG G T +CG+ A
Sbjct: 179 FV-DDLDQAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 237

Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           CA +VA+      + A        +V + GG L+I    +  V MTG A    EG+LD
Sbjct: 238 CAVMVATARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVAEGELD 295


>gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1]
          Length = 273

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 122/297 (41%), Gaps = 41/297 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   K + D
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDD 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG                +++ D+  I    H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230
                    +          F +GVN+         ++ +R  ERG G T +CG+   A 
Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAV 218

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIKTG 284
           A+ +A+   H+    V V   GG +++    +N      +TG A     GK+D+  G
Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273


>gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
 gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
          Length = 259

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 46/288 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLI--HDFQDASV 60
           +F K +G GN  +V+D R    + T   I       N  F    D ++LI  HD  D  +
Sbjct: 5   EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLC--NRKFGVGSDGLILIENHDEYDFEM 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
             F    N DGS+   CGNG RC V+F     + +   TF +  G+              
Sbjct: 63  IFF----NPDGSQ-SMCGNGSRCAVKFAQFLGIIKGETTFLSTDGVH------------- 104

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
             E  ++  ++ L  S   + +   +  P +       F ++ G+PH + F   ++ + D
Sbjct: 105 --EATIEGDIVRL--SMHDVAQSEINTFPEH-------FTINTGSPHYVIFA-SNIKNKD 152

Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  +  F+ EG+N++     S   + +RT+ERGV   T +CG+   A  +A+ 
Sbjct: 153 VKEEGASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIAN- 211

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
            LH     V ++ LGG L++E+        +V++TG AK  ++G++++
Sbjct: 212 VLHGGVSPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259


>gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 274

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 132/294 (44%), Gaps = 40/294 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHFDQIMLIHDFQDASVDA 62
           ++F+K+   GN  ++ID R   + I  +   AL+    D         LI   + A  D 
Sbjct: 3   INFSKLTAAGNDFILIDNR--ENIIAQEDCQALAKKLCDRKYSIGADGLILLEKSACKDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            ++  N DGS    CGNG R + +F     +      FET  G++ A+   +  + +D+ 
Sbjct: 61  KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120

Query: 122 EP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            P     D K+    + FD           VN         ++ G PH + FV DD+ + 
Sbjct: 121 NPRDLKKDIKVEVNGKEFD-----------VNF--------INTGVPHVVIFV-DDIENI 160

Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+  +G  + +H  F+  G N++  +V    +L +RT+ERGV   T ACG+   AS + S
Sbjct: 161 DVFGYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIIS 220

Query: 237 GCLHKTNRAVSVKMLGGG---LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
             + K   A  VK++  G   L +   + N    +V + G A   ++G + I++
Sbjct: 221 --VLKGFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272


>gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
 gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
          Length = 300

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 124/307 (40%), Gaps = 41/307 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F K  G  N  +++       N+ +D +  L+        D ++ +     A+ DA
Sbjct: 5   TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64

Query: 63  ----------FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILV 107
                     F+   N DGS  + CGNG R    +L       +  FE      I+GI  
Sbjct: 65  VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARS----FDKMDRDRFHIGPVNHLFLRNPFV---V 160
                  +I+ +MG     W+    A++    FD +   R            +P+    V
Sbjct: 125 EGSGDHATIATNMGA----WRFTDPAKAETDGFDSLVLLR------ERPLAEDPWSALSV 174

Query: 161 SMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
            MGNPH +  + +  DL   DL     +    P+ S G N+   RV     + +R  ERG
Sbjct: 175 DMGNPHTVVALPESVDLATLDLFHVPEV---RPVPSNGTNVEFVRVVGAGHIAMRVHERG 231

Query: 219 VGLTAACGSAACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           VG T +CG+  CA+ +A+       +  +  +V + GG L +    N+ V + G A    
Sbjct: 232 VGETRSCGTGVCAAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVA 291

Query: 276 EGKLDIK 282
           +G +D+ 
Sbjct: 292 DGTVDLS 298


>gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium]
          Length = 261

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 128/284 (45%), Gaps = 43/284 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K +  GN  ++ID R      T +    ++   +  F    D ++L+ +  D   D
Sbjct: 3   INFYKYQATGNDFVIIDNR--LKTFTKNNTKLIARLCDRRFGIGADGLILL-ELADG-FD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD-M 120
             +   N DG E   CGNG RC+V  L  R+           G++    N    I+VD +
Sbjct: 59  FKMIYYNADGKESSMCGNGGRCIVA-LAQRL-----------GMIQGSTN---FIAVDGL 103

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +  +    + L     KM RD F         L   FVV  G+PH +  +  +L   D+
Sbjct: 104 HKATIQGSQVSL-----KM-RDVFKTAK-----LGGGFVVDTGSPHCVL-MRSNLSAVDV 151

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G+ L   P F  EG+N++  +  S E   +RT+ERGV   T +CG+   A  +A   
Sbjct: 152 QFEGSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHA 211

Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277
           L KTN+  + ++  GG L + +   N    +V+++G A   +EG
Sbjct: 212 LKKTNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255


>gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
 gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
          Length = 259

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 125/286 (43%), Gaps = 39/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  +++D R     ++ + I ++         D ++L+ + +    D  +
Sbjct: 3   IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DG E   CGNG RCVVRF           F+     +      + +++   GE I
Sbjct: 61  VYFNADGGEGSMCGNGGRCVVRFANDLG-----LFDGNTKFIAVDGEHEATVT---GEVI 112

Query: 125 -LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L    +     +++ D                   ++ G+PH + +V DD++  D+ + 
Sbjct: 113 RLKMSNVNGVEQYEEYD------------------FMNTGSPHYVTYV-DDIHEADVVNI 153

Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G+ +    ++    G N++   V     L +RT+ERGV   T +CG+   A  +++    
Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281
                V+V+ +GG L +E+ +        +++ G A + +EG L++
Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259


>gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
 gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 130/289 (44%), Gaps = 48/289 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           ++F K +G GN  +++D R          I  L    +  F    D ++L+ +  D + D
Sbjct: 1   MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLC---DRRFGIGADGLILLEN--DPNYD 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +   N DG E   CGNG RC+V F        +F  +    +   +A    DG    +
Sbjct: 56  FKMVYYNSDGGESTMCGNGGRCLVAF--------AFFLDIFEDKCRFIAT---DGEHEAE 104

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +   I+  K+I              ++  V+H    N FV++ G+PH + +VE +L  Y 
Sbjct: 105 IHNGIIKLKMI--------------NVDAVSHD--GNDFVLNTGSPHYVKYVE-NLKDYP 147

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +     + E G+N++     S   + +RT+ERGV   T +CG+   AS +   
Sbjct: 148 VYDEGYGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALT-- 205

Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
            L K N  +V VK LGG L +    +     ++++ G AK+ + GK D+
Sbjct: 206 FLQKHNLTSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254


>gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
 gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
          Length = 289

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123
           ++  DGS    CGNG RC   +   R        +T  G    V +++R   ++++MG P
Sbjct: 77  LVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVEDDR---VTIEMGAP 133

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               + +PLAR  + ++ +   +             ++ G PHAI FV DD+    L S 
Sbjct: 134 SFRPRDVPLAREEELVEEEIEGL---------TVTALNTGVPHAIAFV-DDVDAVALESV 183

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG--CLH 240
              +    +F +G N+++A      S   RT+ERGV G T +CG+ A A V A+    L 
Sbjct: 184 APAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRVGLV 243

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +  V+V   GG L I   D+    +TG A+ E+E +LD+
Sbjct: 244 DGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284


>gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum]
          Length = 92

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 48/78 (61%)

Query: 202 ARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD 261
           A+V S  ++ +R WERG G+T ACG+ ACA++VA+     T R   + + GG L IEW +
Sbjct: 3   AQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEWTE 62

Query: 262 NNHVFMTGEAKKEWEGKL 279
           ++ V MTG     + G+L
Sbjct: 63  DDRVLMTGPVALAFSGRL 80


>gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1]
 gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2]
 gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3]
 gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4]
 gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2]
 gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1]
          Length = 273

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 121/297 (40%), Gaps = 41/297 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   K + D
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDD 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG                +++ D+  I    H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230
                    +          F +GVN+         ++ +R  ERG G T +CG+   A 
Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAV 218

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284
           A+ +A+   H+    V V   GG +++      D     +TG A     GK+D+  G
Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
 gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
          Length = 285

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 25/282 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  + +D R  G       D +  +         D ++      + S  A
Sbjct: 11  VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70

Query: 63  FI-RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-ISVD 119
           +I    N DGS  + CGNG RC  R      +      F T  G + A+ + D + ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P    K + +A   +   R  FH+  VN            G PHA+  V D L   D
Sbjct: 131 LTPP----KDLRMAIDIEVEGRP-FHLHFVN-----------TGVPHAV-AVMDHLELVD 173

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  + +H  F+  G N++        +L LRT+ERGV   T ACG+ A AS + + 
Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L  T     +   GG +L     +   ++ G A+  ++G+ 
Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEF 275


>gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 332

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 120/293 (40%), Gaps = 24/293 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST----DDNTHFDQIMLIHDFQDAS 59
           S +   K  G  N I VID         +D   A++           D +  + D  D +
Sbjct: 2   SRLSITKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGT 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET---IRGILVAKENRDGSI 116
             A+    N DGS    CGNGMRC  R L  R   +S+T  T      +  A+    G  
Sbjct: 62  AQAWF--FNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVR 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173
            V +  P  D+      +     D     +G   P  H  LR    V+M N H +  V D
Sbjct: 120 QVAVELPPADFS----PQEAIVADVASPFVGQLLPAYHPALRT-TAVAMPNSHLVSVV-D 173

Query: 174 DLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
                DL + G+ +A     F  G N+S  +  +   + +RT+ERG GLT +CGS   AS
Sbjct: 174 SYDRADLVATGSRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSAS 233

Query: 233 --VVASGCLHKTNRAVSVKMLGGGL---LIEWHDNNHVFMTGEAKKEWEGKLD 280
             V++   L +  +AV ++ +GG     L E        + G A   +E +LD
Sbjct: 234 RAVLSRLGLAEPGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYEVELD 286


>gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
 gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
          Length = 272

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 29/225 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRC-VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           F+   N DGS  + CGNG+R   +  +   +   S  F      LV   + D  I+VD  
Sbjct: 67  FMDYRNADGSTSEMCGNGIRVFALHLVQEGLVDPSGPF------LVGTRDGDKQITVDGD 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              +D  +  + R   K+  D       +H++      V  GNPHA+ FV+D      LA
Sbjct: 121 LVTVDMGVAEV-RGTTKVTVD-------DHVWEAQD--VRTGNPHAVAFVDD------LA 164

Query: 182 SFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             G L A+      ++ +GVN+   R    + + +R  ERG G T +CG+ ACA+ VA G
Sbjct: 165 EAGALTAQPEYDEVVYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAAVAHG 224

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             H +       V + GG + +    +  V + G A+    G+++
Sbjct: 225 LDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269


>gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1]
          Length = 273

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 49/301 (16%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRSGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + D
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG                +++ D+  I    H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTV--------------RVESDKVTI---EHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D+   D  ++    A    F +GVN+         ++ +R +ERG G T +CG+ 
Sbjct: 159 HTTVCDINLNDSPTWRPRSA----FPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214

Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283
             A A+ +A+   H+    V V   GG +++    + D     +TG A     GK+++  
Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272

Query: 284 G 284
           G
Sbjct: 273 G 273


>gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
 gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
          Length = 270

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 44/296 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R      +++ I AL T       D ++LI      S D  +
Sbjct: 3   IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIE--ASLSADFTM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFET----IRGILVAKENRDGSI 116
           +  N DG     CGNG RC   F         K   + FE         +V KE     +
Sbjct: 61  KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKE----QV 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            + M  P  D+K             +   +  +   FL      + G+PH + +V DD+ 
Sbjct: 117 KLQMNPP-HDFK-------------ENLQVEGLLCYFL------NTGSPHVVTYV-DDVN 155

Query: 177 HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             ++   G+ +  +  +F+ G N++  + TS   L +RT+ERGV   T ACG+ A AS +
Sbjct: 156 IINVYEKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASAL 215

Query: 235 ASGCLHKTNRA---VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286
            S  L KTN     V+V+  G  L I +     +++++G AK  + G  + KT  +
Sbjct: 216 ISHMLGKTNSTSLNVTVRS-GDTLQISFTSAMENIYLSGPAKIIFSGTFE-KTSNY 269


>gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c]
 gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c]
          Length = 340

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 37/230 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L      ++      T  G+ +A    +G ++V+M
Sbjct: 113 FMDYRNADGSIAEMCGNGLRVFGRYLVDAGYERAGLIPVATRAGVRLADVPNEGDVTVEM 172

Query: 121 GEPI---LDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           G P    L  + + +A R+F+  +                   VSMGNPHA+ F  DDL 
Sbjct: 173 GPPTIGPLGAERVSIAGRTFEATN-------------------VSMGNPHAVCFA-DDLA 212

Query: 177 HYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL +    L + P  S      G N+ I  + + +++ +R +ERGVG T +CG+ ACA
Sbjct: 213 EADLNALD--LTRLPQVSPAAYPTGANVEIV-IGAPDAVRMRVYERGVGETLSCGTGACA 269

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             VA+           + V + GG + + W D++ V + G A    EG L
Sbjct: 270 VAVAAATRAGRGPGTVIPVDVPGGRVTVLW-DSDQVRLRGPAVLVSEGLL 318


>gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923]
 gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2]
 gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150]
 gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023]
          Length = 275

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + + N DGS    CGNG+RC +  +      +  + ET RG+   K      + VDM
Sbjct: 56  DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  DWK         K +R   H+ P         F +  G PH + FV  DL    +
Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDTGVPHVVVFV-SDLSKVPV 160

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238
             +G+ L  H  F+ EGVN+   +    + L + T+ERG    T +CG+   AS + +  
Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220

Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269
           +    +  S+ +      L+  + +   VF+ G
Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253


>gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 289

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 108/249 (43%), Gaps = 45/249 (18%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
           A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      ++G 
Sbjct: 66  ADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIAKEGD 125

Query: 116 ISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           I+V MG  +L   D  +    RS+                  RN   V+MGNPHA+ FV+
Sbjct: 126 ITVGMGGALLPEGDVTVSVGGRSWPA----------------RN---VNMGNPHAVAFVD 166

Query: 173 DDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                 DLA  G+LL   P      + +GVN+          + LR  ERG G T +CG+
Sbjct: 167 ------DLAHAGDLLGPPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGT 220

Query: 228 AACASVVASG-------CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            ACA  VA+         +  T    +V + GG L+I    +  + MTG A    EG+++
Sbjct: 221 GACAVAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE 280

Query: 281 IKTGKWIKK 289
               +W++ 
Sbjct: 281 ---AEWLES 286


>gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 275

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 88/223 (39%), Gaps = 27/223 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG R   R+L      +   F   T  G      + D S++V M
Sbjct: 66  FMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTVQM 125

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYH 177
           G   +    + +                        PF    V++GNPH +   + D+  
Sbjct: 126 GPAAITGTSVTVVAG--------------------QPFSGVAVNVGNPHLVSVTDTDIAG 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL    +    H  F  GVNL    V    +L +R  ERGVG T ACG+   A+V AS 
Sbjct: 166 LDLRDQPDF--DHDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASL 223

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            L   +   S   + GG +          +TG A+    G+LD
Sbjct: 224 HLAGKDTGESTVDIPGGRVSVTVGRGESTLTGPAEIVARGELD 266


>gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
 gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
          Length = 256

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 128/289 (44%), Gaps = 52/289 (17%)

Query: 8   FAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           F K +G GN  ++ID R        +D I+ +    + HF    D I+LI   +DA  D 
Sbjct: 5   FLKYQGTGNDFVMIDNRTKIFPKKNTDKISEIC---DRHFGIGADGIILIE--EDADYDF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +   N DGSE   CGNG RC V F    +M  +  TF  + G   A  N D  IS+ M 
Sbjct: 60  KMIYYNADGSET-FCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNND-FISLQM- 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                            +D   F +         N      G  H +  V +DL  Y + 
Sbjct: 117 -----------------IDVSEFQVK-------ENSIFTYTGTQHHVEMV-NDLEEYPVY 151

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
             G  + ++   + G N++ A+  +  +  +RT+E+GV   T ACG+   A  +A   +H
Sbjct: 152 ENGRKI-RNSYENPGSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALA---MH 207

Query: 241 KTNRA----VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           KT +     +S+ + GG L + + + N    +VF+ G A   ++G+++I
Sbjct: 208 KTGKTNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256


>gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
 gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
          Length = 259

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 35/281 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K +G GN  + ID R    N  +  + A   D         LI    DA+ D  +   
Sbjct: 5   FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLENDATADFKMVYF 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DG+E   CGNG RC+V F     +     TF  I GI  A  N DG + + M      
Sbjct: 65  NADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATIN-DGFVKLKM------ 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
                        D D   +   +H FL      + G+PH +  V +++  +D+ + G  
Sbjct: 118 ------------QDVDTIKVNK-DHTFL------NTGSPHHVALV-NNIKQFDVKTEGAA 157

Query: 187 LAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN- 243
           +    ++ + G N++        +  +RT+ERGV   T +CG+   A  +A   L K N 
Sbjct: 158 IRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKANT 217

Query: 244 RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
           + VS+ + GG L + +        ++++ G A   ++G+++
Sbjct: 218 QEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258


>gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
 gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
          Length = 291

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 95/236 (40%), Gaps = 44/236 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     ++       T  G+     ++ G ++V M
Sbjct: 72  FMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVHLDKRGDVTVSM 131

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN------HLFLRNPFVVSMGNPHAIFFV--- 171
           G                   R  F  G V           RN   V+MGNPHA+ FV   
Sbjct: 132 G-------------------RAEFPEGEVTVSVGDRSWPARN---VNMGNPHAVAFVDSL 169

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D    YD   F    A    +  GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 170 DDAGTLYDAPPFSPASA----YPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGACA 225

Query: 232 SVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VA+      + A        +V + GG L+I  + +  + MTG A     G+ D
Sbjct: 226 VAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD 281


>gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
 gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
          Length = 257

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 126/298 (42%), Gaps = 63/298 (21%)

Query: 6   VDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIML 51
           +DF K +G GN  ++ID R               CH      A            D ++L
Sbjct: 1   MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGA------------DGLIL 48

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKE 110
           + +  D   D  +   N DG+E   CGNG RC+VRF        S T F  + G  +A  
Sbjct: 49  LQN--DPEYDFRMVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMV 106

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           + D SIS+ M     D   I           DR  +  +N            G+PH + F
Sbjct: 107 S-DESISLKM----TDVTGI----------EDRQGLTFLN-----------TGSPHVVRF 140

Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           V DDL  +D+ + G ++    P    G N++ A+V    ++ +RT+ERGV   T +CG+ 
Sbjct: 141 V-DDLESFDVVAEGRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTG 199

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
             A  + +         V ++ LGG L + ++       + +++ G AK+ + G + +
Sbjct: 200 VTAVALVAHQQLGMPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257


>gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 283

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 120/288 (41%), Gaps = 34/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F KM G GN  ++ID R      T+ A           F    D ++LI + ++A  D
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSEEA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              +  N DGS    CGNG RC  RF   +  + R+   F T  G L+  E    ++ + 
Sbjct: 63  FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAG-LIEAEISGTAVLLT 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           M  P                 R   H+ GP       +   V  G PHA+ F  D++   
Sbjct: 122 MTPP--------------GQCRLNLHLAGPTGEELTLH--TVDTGVPHAVLFC-DEIATV 164

Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            +  +G+    HP F+  G N++     +   L +RT+ERGV   T ACG+ A A+ + +
Sbjct: 165 PVKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVA 224

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279
             L +     +V   G  +L+  H +       V + G A   ++G L
Sbjct: 225 SRLGRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272


>gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276]
 gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s]
 gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70]
 gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s]
 gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1]
 gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768]
 gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222]
 gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074]
 gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301]
 gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC]
 gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC]
          Length = 275

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + + N DGS    CGNG+RC +  +      +  + ET RG+   K      + VDM
Sbjct: 56  DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  DWK         K +R   H+ P         F +  G PH + FV  DL    +
Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDTGVPHVVVFV-SDLSKVPV 160

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238
             +G+ L  H  F+ EGVN+   +    + L + T+ERG    T +CG+   AS + +  
Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220

Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269
           +    +  S+ +      L+  + +   VF+ G
Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253


>gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
 gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
          Length = 264

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 45/288 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    N  + A  A   D       D +M + D +    D  
Sbjct: 3   IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQDKE--GYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F        S T F+ + G   AK + +G        
Sbjct: 61  MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKISAEG-------- 112

Query: 123 PILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              DW   ++I +A    +++RD               +V++ G+PH +  VE DL H +
Sbjct: 113 ---DWVSLQMIDVA----QINRD------------GEAYVLNTGSPHYVKLVE-DLKHKN 152

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G+ +  +  +  +G+N++     + E   +RT+ERGV   T ACG+   A  +A  
Sbjct: 153 VYQEGHAIRNNATYRKKGININFVEPMA-EGYFVRTFERGVEDETYACGTGVTAVALAMA 211

Query: 238 CLHKTNRAVS--VKMLGGGLLIEW-HDN---NHVFMTGEAKKEWEGKL 279
             ++ +  ++  VK+LGG L I + +D     ++F+ G AK  +EGK+
Sbjct: 212 QHNQQSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKI 259


>gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
 gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
          Length = 262

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 141/289 (48%), Gaps = 46/289 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           ++ F K  G GN  ++ID R     + S   N +S   +  F    D ++L+   +DA+ 
Sbjct: 8   LMTFYKYHGTGNDFVMIDNRNL---LFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAA 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG+E   CGNG RC+V F     +   + TF  I G+  A E  +G++ + 
Sbjct: 63  DFRMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEA-EITNGTVKLK 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M    +D + I         ++D    G  +        V++ G+PH + +V D L + D
Sbjct: 122 M----IDVQSI---------EKD----GECS--------VLNTGSPHFVQWVAD-LGNLD 155

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           + + GN +     + +EG+N++ A   S   + +RT+ERGV   T +CG+ A A+  A  
Sbjct: 156 VRANGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAA--ALD 213

Query: 238 CLHKTNR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
            L   NR  V VK+LGG L I    N      +++ G A++ + G++++
Sbjct: 214 FLKNGNRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262


>gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
 gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
          Length = 275

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 19/213 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + + N DGS    CGNG+RC +  +      +  + ET RG+   K      + VDM
Sbjct: 56  DAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  DWK         K +R   H+ P         F +  G PH + FV  DL    +
Sbjct: 116 TLP--DWK---------KAERKLTHVLPGMP---EQVFFIDAGVPHVVVFV-SDLSKVPV 160

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGC 238
             +G+ L  H  F+ EGVN+   +    + L + T+ERG    T +CG+   AS + +  
Sbjct: 161 QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAAD 220

Query: 239 LHKTNRAVSVKMLGGG--LLIEWHDNNHVFMTG 269
           +    +  S+ +      L+  + +   VF+ G
Sbjct: 221 IFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEG 253


>gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
 gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
          Length = 290

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 106/237 (44%), Gaps = 46/237 (19%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET---------IRGILVAKENRD 113
           F+   N DGS  + CGNG+R   R+L    +R     E          ++G+ +AK   D
Sbjct: 72  FMDYRNADGSVAEMCGNGVRVFARYL----QRAGLAAEGDLAVATRGGVKGVHLAK---D 124

Query: 114 GSISVDMGE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G+++V MG    P    ++    R++D                 RN   V+MGNPHA+ F
Sbjct: 125 GAVTVSMGHARLPKDGVRVTVDGRTWDA----------------RN---VNMGNPHAVAF 165

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED  +  DL S     +   ++ +GVN+          + +R  ERG G T +CG+ AC
Sbjct: 166 VEDLAHAGDLRSV-PPFSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGAC 224

Query: 231 ASVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A  VA+      + A        +V + GG L+I    +  V MTG A    EG +D
Sbjct: 225 AVAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVID 281


>gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1]
 gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1]
 gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2]
 gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2]
 gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1]
 gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2]
 gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1]
 gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2]
 gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1]
 gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1]
 gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1]
 gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1]
 gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3]
 gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2]
 gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1]
 gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1]
 gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1]
 gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2]
 gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1]
 gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2]
 gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3]
 gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2]
 gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2]
 gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3]
 gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1]
 gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1]
 gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2]
 gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3]
 gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2]
 gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2]
 gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1]
 gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1]
 gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1]
 gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1]
 gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266]
          Length = 273

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 49/301 (16%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRSGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + D
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG                +++ D   I    H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTV--------------RVESDEVTI---EHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D+   D  ++         F +GVN+         ++ +R +ERG G T +CG+ 
Sbjct: 159 HTTVCDINLNDSPTW----RPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214

Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283
             A A+ +A+   H+    V V   GG +++    + D     +TG A     GK+++  
Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272

Query: 284 G 284
           G
Sbjct: 273 G 273


>gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
 gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
          Length = 235

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 46/235 (19%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL 106
           DQ++++   Q    DA IRI N DGSE  +CGNG+RCV + L   +  K F    ++  +
Sbjct: 47  DQLLVLE--QSDKADAAIRIFNNDGSEAANCGNGLRCVGQLLIELLG-KEFVLIALKDRI 103

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           V  E     I V+MG   +             ++    H+             + +GN H
Sbjct: 104 VRAEAGINGICVEMGPATV-------------INSTDAHVD------------IDIGNQH 138

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +FF   + +  DL                V +   ++ +   +D+   ERG G T ACG
Sbjct: 139 RVFFEATEAFPSDL---------------NVEIVTGQIANHVYIDI--IERGAGRTLACG 181

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S ACA+  A        R ++++M GG + +     N V + G   + + G   I
Sbjct: 182 SGACATAAAIWYSEGEVRPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235


>gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4]
 gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4]
          Length = 273

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 44/295 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  +++D R     + S  I+ L         D ++++ +  D   +  +
Sbjct: 3   VFFTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNG RC  RFL          FE         EN+DG    + GE  
Sbjct: 61  VYFNADGSRASFCGNGARCFARFL----------FEM--------ENKDG----EQGEVC 98

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS----------MGNPHAIFFVE-D 173
              +   +   +   +  +  +    +L LR P  +            G PH + F + +
Sbjct: 99  FMTEAGRIT-GWISGEAVKITLPTPKNLTLRIPLEIEGKSYELHKIDTGVPHVVLFEDCE 157

Query: 174 DLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
           +L    L   G+ +  H  F  EG N++ A       + +RT+ERGV G T ACGS   A
Sbjct: 158 NLPRSTLEEIGSRIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTA 217

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDI 281
           S + S  +   +  + V +  G  L  +   +       F+ G AKK + G ++I
Sbjct: 218 SALISHLVLDMDCPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272


>gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 290

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 16/273 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V F K   +GN  LV D       +  + I  +   +       +L   + D     +++
Sbjct: 4   VTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILAGPYLDQE-KMYVK 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGS-ISVDMG 121
           I+N DGSEV   GNGM    ++L     +++ S ++ TI G   V   N +G+ + + MG
Sbjct: 63  ILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGTRVKISMG 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLYHY 178
            P      IP+     +M       G +       P+V   +S+GNPH + ++  ++   
Sbjct: 123 RPSFWSDEIPVTGERREMVNQTMMFGKI-------PYVTTCLSLGNPHCVIWM-SEISKD 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G        F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  
Sbjct: 175 QVCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALR 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           L   +  + V M GG L +E  ++  V+M GE 
Sbjct: 235 LGLADNNMYVHMPGGILEVEIKEDGTVYMVGEV 267


>gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
          Length = 283

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 22/222 (9%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G+GN  +V+D R    +I ++ ++    D         ++         A + + N 
Sbjct: 9   KYHGLGNDFVVLDRRQTGVDIDAE-LSRWMCDRRRGIGADGVLSLLPSQQGLARMVVHNA 67

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123
           DGS  + CGNG+RC V++L      + +    ET  G+L      +      + + MG  
Sbjct: 68  DGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMGPA 127

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYH--YDL 180
            L    +P       +    F   P+  HL LR    VSMGNPH +      L H  Y+ 
Sbjct: 128 RLVAPNLP-----SGVTGQPFVEAPIPEHLGLRG-TAVSMGNPHLVL-----LGHPLYEA 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
              G +L  HP F +  N+   RV   + L +  WERG GLT
Sbjct: 177 ERLGPVLEHHPSFPDRTNVEFVRVDP-DGLTVVVWERGCGLT 217


>gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
 gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
          Length = 290

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 101/235 (42%), Gaps = 32/235 (13%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
           A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      +DG 
Sbjct: 66  AEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIAKDGD 125

Query: 116 ISVDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           I+V MG+ +L    + ++   RS+                  RN   V+MGNPHA+ FV 
Sbjct: 126 ITVGMGKALLPEGDVTVSVGERSWPA----------------RN---VNMGNPHAVAFV- 165

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DDL H          +    + +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 166 DDLTHAGDLYAPPPFSPPAAYPDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACAV 225

Query: 233 VV-------ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V       A   +  T    +V + GG L+I    +  + MTG A    EG++D
Sbjct: 226 AVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID 280


>gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 101

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             V DD+    +   G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ 
Sbjct: 1   MIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTG 60

Query: 229 ACASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267
           ACA+VVA    G L +  + V V + GG L IEW     V M
Sbjct: 61  ACAAVVAGIRLGLLDE-GKTVEVILPGGTLYIEWACGGDVMM 101


>gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 212

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 71  GSEVQSCGNGMRCVVRFLT--SRMKRKSFTFET-IRGILVAKENRDGSISVDMGEPILDW 127
           G   Q CGNG RCV  +L     +  + F  ++ ++   V    +D   +V+MG P+ + 
Sbjct: 4   GPAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKD-EYAVEMGLPVFEP 62

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-DLASFGNL 186
           + IPL+  F     +  ++  +    LR    VSMGNPHA+  VE DL     +   G L
Sbjct: 63  ERIPLS-GFPNACAE--YVLSLQGEVLRC-GAVSMGNPHAV--VEVDLIDVAPVERIGPL 116

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      +  R V
Sbjct: 117 LQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRVGRDV 176

Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
            V + GG L ++W      V ++G A+  ++G
Sbjct: 177 RVVLPGGTLRVQWPVSGGPVTLSGPARCVFDG 208


>gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
 gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
          Length = 257

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 49/288 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R        +  IN L         D ++L+ +  D  +D  
Sbjct: 3   ITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DG+E   CGNG RC+V F      +K K+ TF  + G+       + +I  D  
Sbjct: 61  MVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKT-TFNAVDGL------HNATIKGD-- 111

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             I+  ++I +A   +K           N+ FL        G+PH +  V D++  +D+ 
Sbjct: 112 --IVSLQMIDVAEVKEKE----------NYSFL------DTGSPHHVQLV-DNVNGFDVF 152

Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           + G  + ++ ++ E G N++     + +   +RT+ERGV   T +CG+   A  +A   +
Sbjct: 153 TEGKKI-RYGLYGEAGSNVNFV-TKNAKGYTVRTYERGVEDETLSCGTGVTAVALA---M 207

Query: 240 HKTNR----AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           HK+       + +K++GG L I +   +    +V++TGEAK+ ++G++
Sbjct: 208 HKSGNTNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255


>gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1]
          Length = 284

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 26/258 (10%)

Query: 5   MVDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M+D  KM G GN  LV+D   +      +   A       ++   D ++ +   + A+  
Sbjct: 1   MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAAFR 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC  RF   R +  +  TFET RG  V    R   +++D+
Sbjct: 61  --MRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFET-RGGDVHAVVRGNRVALDL 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY-D 179
                   ++    S +  D          + FL       +G PHA+ F  +      +
Sbjct: 118 APVSTGSAVLKAHASVEGCD--------FTYAFL------VVGVPHAVIFERERRRSIAE 163

Query: 180 LASFGNLL-AKHPMFSEGVNLSIARVTSLES--LDLRTWERGV-GLTAACGSAACASVVA 235
            A  G  L ++  +F  G N++ A ++S +S  LD+ T+ERGV  +T +CG+ + AS +A
Sbjct: 164 YAVLGRALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAIA 223

Query: 236 SGCLHKTNRAVSVKMLGG 253
              L      V V   GG
Sbjct: 224 GRLLGVVGDEVRVVNPGG 241


>gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14]
 gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14]
          Length = 289

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 42/234 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG R   R+L              T  G+      +DG I+V M
Sbjct: 71  FMDYRNGDGSVAEMCGNGTRVFARYLQHAGLAAEGDLAIATRGGVKKIHIAKDGDITVGM 130

Query: 121 GE---PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+   P  D  +    RS+                  RN   V+MGNPHA+ FV+     
Sbjct: 131 GKARLPEGDVAVSVGERSWPA----------------RN---VNMGNPHAVAFVD----- 166

Query: 178 YDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DLA  G+LL+  P      + +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 167 -DLADAGDLLSPPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAV 225

Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            VA+      + AV       +V + GG L+I    +  + MTG A    EG++
Sbjct: 226 AVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI 279


>gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 273

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 17/220 (7%)

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKR-KSFTFETIRGIL-VAKENRD-GSISVDMGEP 123
           N DGS    CGNG+RC  ++    R++  + +  ET+ G   V + + D   + +DMG  
Sbjct: 60  NGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRIDMGTW 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             D K I +    + +   +  +G  +     + +   M   H + FV D  + +D +  
Sbjct: 120 DDDPKSIQVEGQSEPIMDYKLTVGDTS----VSVYSFFMSTVHTVVFVSD-AFAFDYSDI 174

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA----SVVASGCL 239
           G  +  HP++ E  N++   +  + +L + T+ERGVG+T ACG+ ACA    +    GC 
Sbjct: 175 GKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEKKGCA 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            K    + V +  G L IE  D  HV M G A++  +G+ 
Sbjct: 235 SK----LRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270


>gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
 gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
          Length = 259

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 41/245 (16%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG 104
           D I+LI   +    D +++  N DG E   CGNG RC V F      +   +  F+TI  
Sbjct: 45  DGIILIEKIKKY--DFYMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTI-- 100

Query: 105 ILVAKENRDGSISVDMGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
                   DGS    + + I  L+ K I L   + K      HI             ++ 
Sbjct: 101 --------DGSHYASITKNIVSLNMKNIELVEVYKK------HI------------CINT 134

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221
           G+PH I F+++  Y         +        +GVN++  +V     L++RT+ERGV   
Sbjct: 135 GSPHHILFIDNKNYINVYNQGIKIRFNQKYIKKGVNVNFVKVKK-HILNVRTYERGVENE 193

Query: 222 TAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWE 276
           T +CG+   AS +A+  + K     + V+ LGG L +++         +F+ GE    ++
Sbjct: 194 TLSCGTGVTASAIAAYNIKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYK 253

Query: 277 GKLDI 281
           G L +
Sbjct: 254 GILKL 258


>gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
 gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
          Length = 261

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 41/245 (16%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG 104
           D I+LI   +    D +++  N DG E   CGNG RC V F      +   +  F+TI  
Sbjct: 45  DGIILIEKIKKY--DFYMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTI-- 100

Query: 105 ILVAKENRDGSISVDMGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
                   DGS    + + I  L+ K I L   + K      HI             ++ 
Sbjct: 101 --------DGSHYASITKNIVSLNMKNIELVEVYKK------HI------------CINT 134

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221
           G+PH I F+++  Y         +        +GVN++  +V     L++RT+ERGV   
Sbjct: 135 GSPHHILFIDNKNYINVYNKGIKIRFNQKYIKKGVNVNFVKVKK-HILNVRTYERGVENE 193

Query: 222 TAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWE 276
           T +CG+   AS +A+  + K     + V+ LGG L +++         +F+ GE    ++
Sbjct: 194 TLSCGTGVTASAIAAYNIKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYK 253

Query: 277 GKLDI 281
           G L +
Sbjct: 254 GILKL 258


>gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
 gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
          Length = 258

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 40/284 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K +G GN  +++D R    +     + A   D         LI    +  +D  +   
Sbjct: 5   FYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLENEDGLDFKMVYF 64

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DG+E   CGNG RC+V F     +   S +F  I G+  A   ++G +S+ M + + +
Sbjct: 65  NSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQM-KNVSE 122

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K  P                  N +FL        G+PH +  V + L  +++   G  
Sbjct: 123 IKEKP------------------NAVFL------DTGSPHHVQLVAN-LKDFNVKKEGAR 157

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
           L       +G N++        +  +RT+ERGV   T +CG+   A+ +A   +HKT + 
Sbjct: 158 LRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIA---MHKTAKT 214

Query: 246 ----VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
               + +K LGG L I +   +    +VF+TG AK  ++G++D+
Sbjct: 215 AGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258


>gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 258

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 49/288 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F+K +G GN  ++ID R  +     D    +S   +  F    D +ML+ +    S D
Sbjct: 3   IPFSKYQGTGNDFVIIDNRTQY--FPKDDTKLISKLCDRKFGIGADGLMLLENH--PSAD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F  +  +   + TFE I G+       + SI  D 
Sbjct: 59  FRMVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGL------HEASIEGD- 111

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              I+  K+          D  +    P  + FL        G+PH I  V DD+   ++
Sbjct: 112 ---IVQLKM---------QDVSKIKKEPT-YTFL------DTGSPHHIAMV-DDVEKVNV 151

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA--S 236
            + G  L    ++ E G N++  +        +RT+ERGV   T +CG+   A  +A  +
Sbjct: 152 KAEGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHT 211

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEA----KKEWE 276
             L  +N+ V++ + GG L +++   N    ++++ G A    K EW+
Sbjct: 212 NGLTTSNK-VALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGEWQ 258


>gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1]
          Length = 273

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 49/301 (16%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QPLRSGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + D
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDD 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG   ++   +                  + H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTVRVESGEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 D----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D+   D  ++    A    F +GVN+         ++ +R +ERG G T +CG+ 
Sbjct: 159 HTTVCDINLNDSPTWRPRSA----FPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTG 214

Query: 229 --ACASVVASGCLHKTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLDIKT 283
             A A+ +A+   H+    V V   GG +++    + D     +TG A     GK+++  
Sbjct: 215 TVAVAATMATRTGHRGPWTVQVP--GGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPN 272

Query: 284 G 284
           G
Sbjct: 273 G 273


>gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
 gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
          Length = 256

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 119/278 (42%), Gaps = 30/278 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D       +    I AL T       D  +L+   +  + D  +R  N 
Sbjct: 1   MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58

Query: 70  DGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DG     CGNG RC   F  T+ +   + +F+       A       + + M EP     
Sbjct: 59  DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEP----- 113

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                       RD  H   +N  F      V+ G+PH I +   +L  +++   G  + 
Sbjct: 114 ---------DTFRDDIHANGLNCHF------VNTGSPHTIIYT-GELETFNVHDTGYAVR 157

Query: 189 KH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +  +F EG N++  +VT  +SL +RT+ERGV   T ACG+ A A+ + S  L K +   
Sbjct: 158 NNNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTS 217

Query: 247 SVKMLGGG--LLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               +  G  L +E+  D   VF++G AK  + G + +
Sbjct: 218 VSVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255


>gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
 gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
          Length = 284

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 117/282 (41%), Gaps = 25/282 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  + +D R  G       D + A+         D ++ +      S  A
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70

Query: 63  FI-RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGS-ISVD 119
           +I    N DGS  + CGNG RC  R      +   S  F T  G + A  + D S ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +P    K + +  + +           + H  L   F V+ G PHA+  VE DL   +
Sbjct: 131 LTDP----KDLRMDLTVE-----------IEHQELPLHF-VNTGVPHAVAVVE-DLEAVE 173

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  H  F   G N++   V     L LRT+ERGV   T ACG+ A AS V + 
Sbjct: 174 VWKLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVAR 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L  T     +   GG  L     +   ++ G A+  + G  
Sbjct: 234 KLGLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAF 275


>gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM]
 gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD]
          Length = 253

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 131/284 (46%), Gaps = 40/284 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F K +G GN  ++++ R  + + + + I  L         D ++L+ +  D   D  
Sbjct: 1   MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPDT--DFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DG+E   CGNG RC+V F       + K  TF  I G+  A+ N +        
Sbjct: 59  MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKC-TFNAIDGLHEAEVNGN-------- 109

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             ++  K+I ++     + RD             + FV++ G+PH + FV  ++   D+ 
Sbjct: 110 --VVKLKMIDVSN----ISRD------------ASDFVLNTGSPHYVRFVS-EVEKLDVY 150

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +     +  EG+N++       E+L +RT+ERGV   T +CG+   AS + S   
Sbjct: 151 KEGKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQ 209

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
            K   +V++K LGG L +     +    +V++ G A + ++G +
Sbjct: 210 DKDKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253


>gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 285

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 15/215 (6%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-VAKENRDGS-ISVD 119
           +RI N DGS  +  GNG+R   ++L     +++K++   T  G++ +   N DGS + + 
Sbjct: 60  LRIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRIS 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLY 176
           MG+       +P+         +R  +   + +F R  +    VS+GNPH +  + + + 
Sbjct: 120 MGKLSFWSDEVPVTG-------ERREVINEDMVFGRTLYPVTCVSVGNPHCVIPMRE-IS 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   GN       F E +N  I +V    ++ + T+ERG G T A G+ ACA+   +
Sbjct: 172 QPLVCKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             L  T   V V M GG L +E  +N  V+MTGE 
Sbjct: 232 HKLGMTGNKVVVHMPGGELQVEIDENWEVYMTGEV 266


>gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
 gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
          Length = 283

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 36/232 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           F+   N DG+  + CGNG R    +L S  +     TF T  G    +   D   + D+G
Sbjct: 75  FMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD-VWTADLG 133

Query: 122 EP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P +L    + +A  F                   +   V MGNPHA   VE    H   
Sbjct: 134 SPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVESIDPH--- 172

Query: 181 ASFGNLLAKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              G+L    P+F E     GVN+      +   L +R +ERG G T +CG+ ACA +VA
Sbjct: 173 GPVGDLY-DSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACAVMVA 231

Query: 236 S------GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +            +    V + GG L + W  ++ V +TG A    EG   +
Sbjct: 232 AAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283


>gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
 gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
          Length = 261

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 41/286 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           V+F K +G GN  ++ID R    N++ +    +    +  F    D ++ + +      D
Sbjct: 3   VEFYKYQGTGNDFVIIDNR--RYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGED 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     +  K   F  I          DG     +
Sbjct: 61  FKMVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAI----------DGQHEASI 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              ++  K+  ++                N   L N   ++ G+PH +    D L + ++
Sbjct: 111 TNGVVSLKMQDVS----------------NIETLENALYLNTGSPHYVTLTSDIL-NKNI 153

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +  +  F  EG N++     +     +RT+ERGV   T +CG+   A  +A   
Sbjct: 154 KVDGAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHA 213

Query: 239 LHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           L KT++ +V + + GG L + ++ NN    +V++TG A++ ++G++
Sbjct: 214 LSKTDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEV 259


>gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
 gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
          Length = 281

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 41/299 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQD 57
           M    V F KM+G GN  ++ID R     +   ++ A          + D +  I +  +
Sbjct: 4   MFGKSVPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPE 63

Query: 58  ASVDAFI-RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            S   F+ +  N DGS  + CGN  RC  R                  + +A E      
Sbjct: 64  GSGLDFVWQFYNSDGSRAEMCGNASRCAGRLA--------------HALEIAGEQH--VF 107

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----------SMGNPH 166
             D G PI         + F +++  +  + P   L ++    +          + G PH
Sbjct: 108 GSDAG-PIK-------VQVFPELEEVKVQLTPPQGLVVKQTLEIDGEEYEYHFANTGVPH 159

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAA 224
            +  V D +   D+   G     H  F+  G N++  ++   +SL +RT+ERGV   T A
Sbjct: 160 VVVQVAD-VEEVDIKKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYA 218

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           CG+   A  V       T+ AV V+  GG +L    ++ +VF+ G A+  + G++ +++
Sbjct: 219 CGTGVSAVQVTLYEQGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLES 277


>gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
 gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
          Length = 357

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 148/355 (41%), Gaps = 84/355 (23%)

Query: 3   SSMVDFAKMEGIGNKILVID------MRGCHDNITSDAINALSTDDNTH------FDQIM 50
           S  ++F KM+G GN  +V +      + G    +T + I+   T   +H       DQ++
Sbjct: 11  SYRINFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGF-TKKLSHRKLGIGCDQLI 69

Query: 51  LIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTF----- 99
           +I D  +    A+ + +INCDG+    CGNG+RC  +++      S+  ++   F     
Sbjct: 70  IIDDNPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDK 129

Query: 100 -----ETIRGI----------LVAKENRDGSISVDMGE--------------PILDWKLI 130
                ET  GI          L  KE     + V+MG               P    K  
Sbjct: 130 IEQIIETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQS 189

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-YHYDLASFG----- 184
           PL      +D    +   +  ++      VS+G    + F++ ++   Y  +S+G     
Sbjct: 190 PLESYMYTIDIGLPYCSKLECVY------VSVGVNQCVVFIDRNIELGYLDSSYGDFSKF 243

Query: 185 ---NLLAKHPMFSEGVN--LSIARVT--------SLESLDL-RTWERGVGLTAACGSAAC 230
              N+     +    VN  + IA V          LE+  + R  ERG G T ACG+ AC
Sbjct: 244 SMINIQEISDIIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGAC 303

Query: 231 ASVVAS---GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
              VAS   G  ++   ++ V+M GG LLI+W  NN  +F TG A   ++ ++ I
Sbjct: 304 GVAVASILKGYCNENTESI-VEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQILI 357


>gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
 gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
          Length = 270

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 23/173 (13%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
           Q    + F+   N DGS  + CGNG+R   R+L          F   T  G+   +   +
Sbjct: 60  QAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAE 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           G ++VDMG P +      L  S   +D R+   +G            VSMGNPH    +E
Sbjct: 120 GDVTVDMGRPRV------LGESRTAVDGREYQGLG------------VSMGNPHLACLIE 161

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           D +   DL+      A   +F +GVN+ +  +T    + +R +ERG G T +C
Sbjct: 162 DPVAGLDLSRPPRFDAA--VFPDGVNVELFNLTGDHRVTMRVYERGSGETRSC 212


>gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
 gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
          Length = 258

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 48/286 (16%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K +G GN  ++ID R        + IN ++   +  F    D ++L+ +  D +VD  
Sbjct: 5   FYKYQGTGNDFVMIDNR--SKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F     M  K   F  I G+  A    +G +++ M  
Sbjct: 61  MVYFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATIT-NGVVNLKMN- 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                            + D   + P       + F +  G+PH +  V+D L  + +  
Sbjct: 119 -----------------NVDEIVVKP-------SSFFLDTGSPHHVQLVKD-LGSFQVFE 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +       EG N++    T   +  +RT+ERGV   T +CG+   A  +A   +HK
Sbjct: 154 EGKKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIA---MHK 210

Query: 242 TNR----AVSVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKL 279
             +     + +   GG L +    E++  ++V + G AK+ ++G++
Sbjct: 211 AKKVDSNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEM 256


>gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG]
 gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF]
          Length = 295

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 126/303 (41%), Gaps = 43/303 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59
           S+ + F K  G  N  ++I       ++  DA+ AL  D         L+H  + A+   
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60

Query: 60  -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---V 107
                   + F+   N DGS  + CGNG+R   R+L     +        T  G+    +
Sbjct: 61  GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120

Query: 108 AKENRDGS---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           AKE   G+   I+V+MG          +AR  +     R   G      LR    V MGN
Sbjct: 121 AKEEAPGAPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV D     +L +   +L     +  GVN+      +  +L +R  ERG G T +
Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPRGVNVEFVVDRAPGALAMRVHERGSGETRS 223

Query: 225 CGSAACASVVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+         +T R    +V + GG L I    +  V MTG A    EG
Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283

Query: 278 KLD 280
            +D
Sbjct: 284 TID 286


>gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074]
          Length = 296

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 44/242 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD------- 113
           F+   N DGS  + CGNG+R   R+L              T  G+  A   +D       
Sbjct: 71  FMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDLPIATRGGVKHAHLAKDEPGAEPG 130

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G ++V MG   L    + +A +            P  H        V+MGNPHA+ FV 
Sbjct: 131 TGPVTVAMGRAALPGGDVTVATAHGTA--------PALH--------VNMGNPHAVAFVA 174

Query: 173 DDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           D      LA  G LL+   +     + +GVN+          + +R  ERG G T +CG+
Sbjct: 175 D------LADAGELLSAPAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETRSCGT 228

Query: 228 AACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            ACA  VA+      + AV       +V + GG L+I  + +  V MTG A    EG++D
Sbjct: 229 GACAVAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAEGEID 288

Query: 281 IK 282
            +
Sbjct: 289 AE 290


>gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
 gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
          Length = 162

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH----FDQIMLIHDFQDASVDAFIRI 66
           M G+GN  +V+D    +   + + I  L+   N H    FDQ++++    D  +D   RI
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLA---NRHTGVGFDQLLVVEAPYDPELDFHYRI 57

Query: 67  INCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DGSEV  CGNG RC  RF  L     ++     T  G +  +   +  + V+MGEP 
Sbjct: 58  FNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPE 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFL 154
            + +  P   +  K  +D ++ G   H  +
Sbjct: 118 FEPQKNPFPCT--KGRKDLYYQGNGTHCIM 145


>gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
 gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
          Length = 261

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 41/287 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID       +I  + +  +         D +M +    D   D  
Sbjct: 3   IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFLTSHPD--YDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F     +  K   F  + G   AK + +G        
Sbjct: 61  MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEG-------- 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              +W  + +    D + RD               +V++ G+PH +  +E +L  YD+  
Sbjct: 113 ---NWVELQMI-DIDTIGRD------------GEAYVLNTGSPHYVARME-NLATYDVYH 155

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +  +  +  EG+N++       + L +RT+ERGV   T ACG+   A V  S  LH
Sbjct: 156 EGKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTA-VALSMALH 213

Query: 241 KTNRA---VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
           K         VK+LGG L +E+  N     +VF+ G A+K +EG+L+
Sbjct: 214 KQQSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260


>gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
 gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
          Length = 270

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 126/293 (43%), Gaps = 51/293 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K +G GN  ++ID R      T +  NA+    N  F    D +ML+ D  D   D
Sbjct: 12  IHFYKYQGAGNDFILIDNRDLSFKYTGN--NAVLQLCNRRFGIGADGLMLLQDHAD--YD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDM 120
             +   N DG     CGNG RC+V F        S T F  + G   AK +  G+     
Sbjct: 68  FEMLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGN----- 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----DLY 176
               +D ++I +            HIG          +V++ G+PH +  V +    D+Y
Sbjct: 123 ---WVDLQMIDID-----------HIGNDGE-----AYVLNTGSPHYVAQVNNLETLDVY 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           H   +   N   K     EG+N++       + L +RT+ERGV   T ACG+   A V  
Sbjct: 164 HEGHSIRNNETYK----QEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTA-VAL 217

Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           S   HK         VK+LGG L I +  N     +VF+ G A++ +EG + I
Sbjct: 218 SMAQHKGQNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270


>gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54]
 gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila
           LSv54]
          Length = 297

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 45/275 (16%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------NTHFDQIMLIH- 53
           M+   + F KM G GN  + ID R   +     AI A           +   D I+ I  
Sbjct: 4   MEKGALSFTKMSGAGNDFIFIDNR---EGAVPPAIRAKLAAHICPRMFSVGADGIIFIEK 60

Query: 54  -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKEN 111
               D S D +    N DGS  + CGNG RC  R+  SR +     +F T+ GI+ A+  
Sbjct: 61  SSIADFSWDFY----NADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVF 116

Query: 112 RDGSISVDMGEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
            D ++ + M  P  D++    + L  +  ++D            FL        G PHA+
Sbjct: 117 ADDTVCLQMTAP-EDYRSGLSLELGGTSCQVD------------FLNT------GVPHAV 157

Query: 169 FFVED-----DLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GL 221
            +V++      + +  +  +G ++  H  F+  G N++        SL +RT+ERGV   
Sbjct: 158 VYVDEVSEGQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDE 217

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256
           T ACG+ A A+ +     +     V++   GG +L
Sbjct: 218 TMACGTGAVAAALCFSKKYGFASPVNIVSSGGEIL 252


>gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
 gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1]
 gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
          Length = 260

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 18/167 (10%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
              ++ DA + I N DGS    CGNG+RCVV  L+  +K+   + ET  G    + +   
Sbjct: 50  LPSSTADAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWE 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
            + VDM  P  ++    L+ +   + R+ F I                G PH + FVED 
Sbjct: 110 RVVVDMTLPDWNYTCHTLSHTLPGVPREVFSI--------------HTGVPHLVVFVEDV 155

Query: 174 DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219
                DL  +G+ L  H  F  +G N++  +        LRT+ERG+
Sbjct: 156 SCVPVDL--WGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGL 200


>gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
          Length = 253

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           ++ DA + I N DGS    CGNG+RCVV  L+  +K+   + ET  G    + +    + 
Sbjct: 46  STADAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVV 105

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLY 176
           VDM  P  ++    L+ +   + R+ F I                G PH + FVED    
Sbjct: 106 VDMTLPDWNYTCHTLSHTLPGVPREVFSI--------------HTGVPHLVVFVEDVSCV 151

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV 219
             DL  +G+ L  H  F  +G N++  +        LRT+ERG+
Sbjct: 152 PVDL--WGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGL 193


>gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
 gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
          Length = 295

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 125/303 (41%), Gaps = 43/303 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59
           S+ + F K  G  N  ++I       ++  DA+ AL  D         L+H  + A+   
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60

Query: 60  -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL---V 107
                   + F+   N DGS  + CGNG+R   R+L     +        T  G+    +
Sbjct: 61  GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120

Query: 108 AKENRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           AKE   G    I+V+MG          +AR  +     R   G      LR    V MGN
Sbjct: 121 AKEEAPGFPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV D     +L +   +L     +  GVN+      +  +L +R  ERG G T +
Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPRGVNVEFVVDRAPGALAMRVHERGSGETRS 223

Query: 225 CGSAACASVVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+         +T R    +V + GG L I    +  V MTG A    EG
Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283

Query: 278 KLD 280
            +D
Sbjct: 284 TID 286


>gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 120/299 (40%), Gaps = 39/299 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDAS-- 59
           M DF K + +GN  L++D RG    + ++ +     L  D +       L+    DA   
Sbjct: 1   MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60

Query: 60  -VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAK--EN 111
              A +RI N DGSE    GNG+R    +L     R+      FT  T  G    +  + 
Sbjct: 61  GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120

Query: 112 RDGSISVDMGEP-----------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            DG + V MG                  ++PLA +           GP + + + +   +
Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGA-----------GPGDEVTVTD---L 166

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
            +G PH +    D +    +   G  LA HP   EG N+   RV    +LD+  WER  G
Sbjct: 167 HLGVPHTVVL-RDAIDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAG 225

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              A GS ACA+   +         V+V+M GG + +    +  +   G A++   G L
Sbjct: 226 PVPASGSGACAAAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVL 284


>gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2]
 gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2]
          Length = 288

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 33/293 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD------------AINALSTDDNTHFDQIMLIH 53
           V F K  G GN   V+D     D+   D            A   LS  +    D ++ + 
Sbjct: 7   VPFEKFHGTGNDFFVVDA----DDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLA 62

Query: 54  -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            + +       + ++  DGS    CGNG R    +   R        +T  G    + + 
Sbjct: 63  LESRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTR--RASL 120

Query: 113 DGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           DG+ ++V+MG P    + +PLA   + +D +      V  L +     V+ G PHA+ FV
Sbjct: 121 DGTDVTVEMGAPSFAPRDVPLASDDELVDTE------VEGLTVT---AVNTGVPHAVAFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC 230
           +D      L S    +    +F EG N+++A          RT+ERGV G T +CG+ A 
Sbjct: 172 DDVDDVD-LESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAV 230

Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A V A+  L +   +  V+V   GG L +   D     + G A  E +G+ DI
Sbjct: 231 AVVAAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283


>gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 284

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 24/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           + S+M  F KM+G GN  ++ D    +   + ++  A            D ++ + + + 
Sbjct: 4   LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
              D      N DGS  + CGNG RC  R L  R  +  +   F T  G + A+    G 
Sbjct: 64  QGHDFDWHFFNADGSRAEMCGNGSRCAAR-LAHRLGLAGREQVFGTDAGAVRAQVKDKGK 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V +  P  + +L  +  +F++      H              V+ G PHA+  + DD+
Sbjct: 123 VRVQL-TPAENLQLHSIL-NFEESSPVNLH-------------SVNTGVPHAV-IICDDV 166

Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
           +  +++  G ++  HP F+  G N++  +V     + LRT+ERGV   T ACG+ A ASV
Sbjct: 167 HKVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASV 226

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           V +  L     +V V   G   L        VF+TG+A   ++G L + T
Sbjct: 227 VVASALGLCANSVQVVTSGKEHLNIDLQEQGVFLTGKADFIYQGMLFLDT 276


>gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
 gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
          Length = 278

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 32/295 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ D R      D++   A    +   +   D ++L+ +      D 
Sbjct: 4   LQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVEN--SDQCDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +  N DGSE + CGN  RCV RF   +++  +  TFET+ G++ A+          +G
Sbjct: 62  KWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEV---------LG 112

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E +        A   D  D   F+   V+     N   ++ G PH +  V  ++   D+ 
Sbjct: 113 ETV-------KAGLTDPTDVKYFYALDVDGTTC-NVTSMNTGVPHVVLLV-GNIEKPDVE 163

Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  H  F+  G N++       E L +RT+ERGV G T ACG+ A A+ +A    
Sbjct: 164 ELGRKIRYHEAFAPAGTNVNFVEFRRGE-LAVRTYERGVEGETLACGTGAVAAALARVAA 222

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                 V V    GG L   +        ++F+ G+A   + G++     K  +K
Sbjct: 223 DAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQK 277


>gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
 gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
          Length = 292

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 28/296 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           ++ +++F KM G GN  +V+D R      + +   A            D ++ +   +  
Sbjct: 3   KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSIS 117
                +R  N DGS    CGNG RC+ RF   + ++     FET  GI  A+   D    
Sbjct: 63  DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEVPDDPQAP 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +         +P A +++   R      P++  F    F+ + G  H + FV   +  
Sbjct: 123 VRL--------YLPPAGTYEPNPR---LATPLDTQFESVAFIWT-GTEHLVCFV-PAVEA 169

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLES----LDLRTWERGV-GLTAACGSAACA 231
             +A +G  L   P     G N+    V         L  RT+E+GV   T ACG+ A A
Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229

Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
           + + +    +  +  ++V M GG L + +   +     +F+ G A+  + G +++ 
Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285


>gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
 gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
          Length = 262

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 125/288 (43%), Gaps = 42/288 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F K +G GN  ++ID R   +       N +    +  F    D ++L+ +      D
Sbjct: 3   ISFYKYQGTGNDFVMIDNR--SEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     +      FE + G   A  +  G +++ M
Sbjct: 59  FKMVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                        +  D +++        N+ FL      + G+PH +  V D+L   D+
Sbjct: 119 -------------KDVDTVNQQE------NYTFL------NTGSPHHVQLV-DNLVELDI 152

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  +    ++ + G N++       +   +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 KTEGAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQ 212

Query: 239 LHKT-NRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
             KT N  + + + GG L +++     +  +VF+ G A   +EGK+D+
Sbjct: 213 TGKTSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDL 260


>gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
 gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
          Length = 268

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 25/230 (10%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           Q    + F+   N DG   + CGNG+R   R+L          F   T  G+   +    
Sbjct: 60  QAGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAET 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G ++VDMG P L             + R R  +    +  LR    V MGNPH    + D
Sbjct: 120 GDVTVDMGTPRL-------------LGRSRTTVAGQEYEGLR----VDMGNPHLACAIGD 162

Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +   DL+   +  A  P  F  GVN+ +        + +R +ERG G T +CG+ A AS
Sbjct: 163 PVAQLDLS---HQPAFDPEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVAS 219

Query: 233 VVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            VA+  L  +T    +V++LGG + +   D    ++ G A     G L +
Sbjct: 220 AVAAAHLAGETTGTWAVEVLGGTVTVTL-DERTSYLAGPAVLVASGDLSL 268


>gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
 gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
          Length = 261

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 61/299 (20%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----------DQIMLIH 53
           S + F K +G GN  +++D R    N          T++  HF          D +ML++
Sbjct: 2   SAIHFYKYQGTGNDFVIMDNRNGEYNFL--------TEEQVHFLCDRRFGIGADGLMLLN 53

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
             +    D  ++  N DG E   CGNG RC+V F     ++   T E +   L      +
Sbjct: 54  --KQEGYDFGMKYYNADGRESSMCGNGGRCLVAF----ARKMGLTDEKLS-FLAVDGPHE 106

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            ++  D      DW  + +       D     I  + H +L      + G+PH + FV  
Sbjct: 107 ATLKGD------DWVNLKM------QDVSGVEINSL-HSYL------NTGSPHYVKFVA- 146

Query: 174 DLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLD----LRTWERGV-GLTAACGS 227
           D+   D+ + G  +  +  F+ EG N++      ++SLD    +RT+ERGV   T +CG+
Sbjct: 147 DVKAVDVYNEGKQIRYNDRFAKEGTNVNF-----VQSLDKGIFVRTYERGVEDETYSCGT 201

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281
              A+ + +         V V+ LGG L + +        N++++ G A   +EG + +
Sbjct: 202 GVTAAALMTAGAETKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITL 260


>gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
 gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
          Length = 259

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 125/285 (43%), Gaps = 40/285 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K +  GN  ++I+       +    I  L   +     D ++LI   ++   D ++
Sbjct: 3   INFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDFYM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +  N DG E   CGNG RC V F      + + +  F++I G   A        S+    
Sbjct: 61  KYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKSIDGYHYA--------SIKQNI 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L+ K + L + + +            H++      ++ G+PH I F ++ + + ++  
Sbjct: 113 VSLNMKNVELVKVYPE------------HIY------INTGSPHHILF-KEKINNINVYK 153

Query: 183 FGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +         GVN++  ++     L++RT+ERGV   T +CG+   AS +A+  + 
Sbjct: 154 EGKKIRFNQKYIKTGVNVNFVKINK-NILNVRTYERGVENETFSCGTGVTASAIAAYHIK 212

Query: 241 KT-NRAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
           K     + VK LGG L +++         +F+ GE    ++G ++
Sbjct: 213 KILYNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257


>gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 291

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 47/228 (20%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFET---IRGILVAKENRDGSIS 117
           F+   N DG+  Q CGNG+R   R+L  T R +  +    T   +R + +   + DG  +
Sbjct: 71  FMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTVPIATRSGVRQVHIPGGDPDGHPT 130

Query: 118 VDMGEPILDW----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           V MG P        K+    R++           P  H        V +GNPHA+  V+ 
Sbjct: 131 VAMGRPAFPGPDGIKVTANGRTW-----------PALH--------VDVGNPHAVVQVD- 170

Query: 174 DLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                DLA  G+L     +     + EGV +          L LR  ERG G T +CG+ 
Sbjct: 171 -----DLADPGDLRTPPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTG 225

Query: 229 ACASVVASGCLHK-----TNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           A A+V A   LH+     T R  +V + GG L ++   +  + ++G A
Sbjct: 226 AVAAVAAV--LHREPGVPTGR-YTVDVAGGSLAVDVAPDGDMHLSGPA 270


>gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
 gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
          Length = 295

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 102/245 (41%), Gaps = 39/245 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD------G 114
           F+   N DGS  + CGNG+R   R+L     +        T  GI  A    D      G
Sbjct: 71  FMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGIKRAHLANDEAPGVPG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFFVE 172
            I+V+MG          +AR  +     R   G  P  H        V MGNPHA+ FV 
Sbjct: 131 EITVEMG----------VARLPEGEVEVRVGSGTRPATH--------VDMGNPHAVTFVT 172

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D     +L     +L     + +GVN+      +  +L +R  ERG G T +CG+ ACA 
Sbjct: 173 DLAEAGELREAPEVLPAS-AYPQGVNVEFVVERAPGALAMRVHERGSGETRSCGTGACAV 231

Query: 233 VVASGC-----LHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            VA+         +T R    +V + GG L I    +  V MTG A    EG +D   G 
Sbjct: 232 AVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGTID---GD 288

Query: 286 WIKKN 290
           W+  +
Sbjct: 289 WLAAS 293


>gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 285

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 90/232 (38%), Gaps = 32/232 (13%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENR-DGS 115
           F+   N DG+E Q CGNG+R   R+L  T           T  G+    +  +  R  G 
Sbjct: 74  FMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRTRFHGP 133

Query: 116 ISVDMGEPILDWK----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           ++V MG P L       +    R++  +                    V MGNPHA+  V
Sbjct: 134 VTVQMGRPRLPGPDHITVTAGTRTWPALH-------------------VDMGNPHAVALV 174

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DDL H    +    +     +  G  +          L LR  ERG G T +CG+ ACA
Sbjct: 175 -DDLTHPGPLTTPPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGACA 233

Query: 232 SVVASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +V A+            V   GG L +  H +  + +TG A+    G + + 
Sbjct: 234 AVAAATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285


>gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1]
 gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1]
 gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1]
 gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2]
 gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4]
 gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1]
 gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3]
 gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1]
 gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1]
 gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1]
 gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1]
 gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2]
 gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1]
 gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1]
 gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2]
 gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3]
 gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2]
 gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1]
 gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2]
          Length = 273

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 118/297 (39%), Gaps = 41/297 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDA 58
           M  F K  G GN  +++D +   D +TS  +  L         D T   Q +   D +D 
Sbjct: 1   MTTFWKGHGTGNDFVIVDQQ---DPLTSAQVRWLCHRRFGIGADGTL--QALRAGDVEDW 55

Query: 59  SVDA---FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + D    F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + +  
Sbjct: 56  NGDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDG 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE 172
           G +SV MG   ++   +                  + H  +  P   V +GNPHA+   +
Sbjct: 116 GDVSVTMGTVRVESGKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTD 158

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA--AC 230
                    +          F +GVN+         ++ +R  ERG G T +CG+   A 
Sbjct: 159 HTTVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAV 218

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284
           A+ +A+   H+    V V   GG +++      D     +TG A     GK+D+  G
Sbjct: 219 AATMATRTGHRGPWTVQVP--GGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
 gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
          Length = 295

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 123/303 (40%), Gaps = 43/303 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59
           S+ + F K  G  N  ++I       ++  DA+ AL  D         L+H  + A+   
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALC-DRRAGIGGDGLLHVVRSAAHPE 60

Query: 60  -------VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L     +        T  G+  A  
Sbjct: 61  GRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHL 120

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            +D      G I+V+MG          +AR  +     R   G      LR    V MGN
Sbjct: 121 AKDEAPGVPGEITVEMG----------VARLPEGEVEVRVGSG------LRPATHVDMGN 164

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV D     +L +   +L     +  GVN+      +  +L +R  ERG G T +
Sbjct: 165 PHAVTFVTDLAEAGELRTAPEVLPAS-AYPHGVNVEFVVDRAPGALVMRVHERGSGETRS 223

Query: 225 CGSAACASVVASGCLHKTNRA-------VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+      + A        +V + GG L I    +  V MTG A    EG
Sbjct: 224 CGTGACAVAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEG 283

Query: 278 KLD 280
            +D
Sbjct: 284 TID 286


>gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
          Length = 317

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 125/315 (39%), Gaps = 55/315 (17%)

Query: 3   SSMVDFAKMEGIGNK-ILVIDMRGC--------------HDNITSDA-INALSTDDNTHF 46
           +  V F K  G GN  +L+ D  G               H  I +D  I A+ +      
Sbjct: 18  APRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPEG 77

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFET 101
           + ++  H       + F+   N DGS  + CGNG+R  V FL  +        ++ T  T
Sbjct: 78  EALLAEH----PEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGT 133

Query: 102 IRGILVAKENRDGSISVDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
             G+        G  ++DMG    LD +L   A S D M R      P      R    V
Sbjct: 134 RAGVKAVTRLEHG-YAIDMGPWCYLDPELAEEAAS-DSMVRAHGLTDP------RPALSV 185

Query: 161 SMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL-------- 210
           SMGNPH +  +    DL   DL   G      P    G N+    V + E L        
Sbjct: 186 SMGNPHTVVPLASFADLQGLDL---GRAPEVDPAPPHGTNVEF--VAAHEPLVREGVGRV 240

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE----WHDNNH 264
            +R  ERGVG T +CG+ ACA  VA           S  V++ GG L ++         H
Sbjct: 241 RMRVHERGVGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEH 300

Query: 265 VFMTGEAKKEWEGKL 279
           V ++G A+  ++G+L
Sbjct: 301 VVLSGPAELVFDGEL 315


>gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
 gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 126/287 (43%), Gaps = 39/287 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K +G GN  ++ID R       +  I  L         D ++L+ +  D+  D  +  
Sbjct: 5   FFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKMIY 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DG E   CGNG RC+V F     +     TFE + G+  A    + ++S+ M    +
Sbjct: 65  FNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSAIIKGE-TVSLKM----I 119

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D   + L+R    M+                      G+PH + FV DD+  +D+ + G 
Sbjct: 120 DVPTVNLSREASFMN---------------------TGSPHHVAFV-DDVKDFDVFAQGR 157

Query: 186 LLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
            +   P +    G N++  +V   + + +RT+ERGV   T +CG+   A+ + S   +K 
Sbjct: 158 RIRNLPNYEAIGGTNVNFIQVIDGD-VHVRTYERGVEDETYSCGTGVTAAAITSKMANKV 216

Query: 243 -NRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIKT 283
            +  V V   GG L +++     +   ++++ G A   +EG  + KT
Sbjct: 217 EDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263


>gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 277

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 31/217 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R    FL              T  G     E  D      +
Sbjct: 68  FMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFRAGI 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G   +     P   S D ++ +                 V +GNPHA+ F+  D+   DL
Sbjct: 128 GH--VQVASQPTHVSLDGVEYEAT--------------TVDVGNPHAVVFLPADV---DL 168

Query: 181 ASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
            S   L   HP      ++  G N+   RV S  SL +R +ERG G T +CG+   A+  
Sbjct: 169 ES---LDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAA 225

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           A G          V + GG L +E  D++   +TG A
Sbjct: 226 AQGARLGEQGRFGVDVPGGHLEVEL-DDSMAHLTGPA 261


>gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis]
          Length = 205

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 99/242 (40%), Gaps = 53/242 (21%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K +G GN  ++ID R        DA    + D N H     L H       D  I
Sbjct: 1   MIHFWKYQGAGNDFIMIDDR--------DA----TFDINDHEKVAFLCHRRFGVGGDGLI 48

Query: 65  RI------------INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            I             N DG     CGNG RC VRF  +        F+T      A    
Sbjct: 49  LIRLKEGYDFEMVYFNADGHVGTMCGNGGRCAVRFAHTLG-----LFDTTTSFWAA---- 99

Query: 113 DGSISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           DG+    + E  ++  K+ P        D          H F+        G+PH + F 
Sbjct: 100 DGAHEATLDEQQLVHLKMNPPGEIEINAD----------HYFM------DTGSPHYVRF- 142

Query: 172 EDDLYHYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
           E DL ++D  + G  +  +  F+ EG N++ A+VT  +SL +RT+ERGV   T ACG+  
Sbjct: 143 EKDLDNFDCVTEGKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGV 202

Query: 230 CA 231
            A
Sbjct: 203 TA 204


>gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 266

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 26/218 (11%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
           F+   N DGS  + CGNG+R     L +   +  + F  +T  G+    ++  ++ D ++
Sbjct: 58  FMDYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQADSTDATV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175
            V MG   ++   +  AR  D               F      V +GNPH    +     
Sbjct: 118 KVGMGR--VEVTGVSTARMGD---------------FDFAGLGVDVGNPHLAAVIPGLTA 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D   F      H  F EGVN+ +    +   + +R WERGVG T +CG+   A+  A
Sbjct: 161 AELDAMQFAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARA 220

Query: 236 SGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           +       N  V+V + GG + +E  D     MTG +K
Sbjct: 221 ALADAGVENGTVTVNVPGGAIEVELSDGE-ALMTGPSK 257


>gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58]
 gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58]
          Length = 315

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 35/241 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  V FL  +        +S T  T  G+        G  +
Sbjct: 88  FMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKTVSRLAHG-YA 146

Query: 118 VDMGE-PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DD 174
           +DMG    LD +L   A S D M        P      R    VSMGNPH +  +   +D
Sbjct: 147 IDMGPWSYLDPELAEEAAS-DAMVLAAGLADP------RPALSVSMGNPHTVVPLASFED 199

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL--------DLRTWERGVGLTAACG 226
           L   DL     +    P  S G N+    V + E L         +R  ERGVG T +CG
Sbjct: 200 LEGLDLTRAPEV---DPAPSHGTNVEF--VAAHEPLVREGVGRARMRVHERGVGETQSCG 254

Query: 227 SAACASVVASGCLHKTNRAVS--VKMLGGGLLIEW--HDNN--HVFMTGEAKKEWEGKLD 280
           + ACA  VA         + S  V++ GG L +++  H +   HV + G A+  ++G+L 
Sbjct: 255 TGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAELVFDGELT 314

Query: 281 I 281
           +
Sbjct: 315 V 315


>gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 321

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107
           F+   N DGS  + CGNG+R   R+L              T  G+               
Sbjct: 84  FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 143

Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
              +  G+I+V MG  +L  + + +   AR +           P  H        VSMGN
Sbjct: 144 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 184

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV+D  +  +L         H ++ +GVN+          + +R  ERG G T +
Sbjct: 185 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 243

Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A    EG
Sbjct: 244 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 303

Query: 278 KL 279
            +
Sbjct: 304 TI 305


>gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
 gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
          Length = 265

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 44/283 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           DF  +EG  +  L I +   H  + +D +  L                 +       IR+
Sbjct: 12  DFLIVEGKADAALAIALCQRHTGVGADGVEFLE----------------KTGPHSGTIRL 55

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKE-NRDGS---ISVD 119
           +N DGS  +  GNG RCV  ++      +   + T  T  G    +  + DG+   ++  
Sbjct: 56  VNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMATG 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LY 176
           MG P +   ++ L +                        VV  GNPH +  V+     + 
Sbjct: 116 MGVPTVRHGMVKLPQGITVEGS-----------------VVHTGNPHFVIEVQSGDFTVQ 158

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +D    G  +  HP F    N+         ++ +R +ERGVG T + G+  CAS  A+
Sbjct: 159 GHDWREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAAT 218

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
               +    + V   GG   +EW      + +TG A+   +G+
Sbjct: 219 IAAARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261


>gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2]
 gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2]
          Length = 273

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 15/219 (6%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-VAKENRDG-SISVDMGEP 123
           N DGS    CGNG+RC  ++         + +  ET+ G+  V + + D   + +DMG  
Sbjct: 60  NADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRIDMGT- 118

Query: 124 ILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              W   P +   D +      +  PV    +   +   M   H + FV D  + +D   
Sbjct: 119 ---WDDEPKSIQVDALKEPVMGYELPVGDKSV-TVYSFFMSTVHTVVFVSD-AFAFDYNE 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ +  H ++ E  N++  ++    +L + T+ERGVG+T ACG+ ACA+   +    K 
Sbjct: 174 IGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAH--EKK 231

Query: 243 NRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             A ++K++   G L I+  D  HV M G A++  +G++
Sbjct: 232 GCAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270


>gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 314

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 41/260 (15%)

Query: 4   SMVDFAKMEGIGNK-ILVIDMRGCHDNITSDAINAL-------STDDNTHFDQIMLIHDF 55
           S + F+K  G GN  +LV D  G H +I +D + AL         D          + + 
Sbjct: 17  SGLRFSKGHGTGNDFVLVADPEGAH-SIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEG 75

Query: 56  QDASVDA-----FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGI 105
           ++  V A     F+   N DGS  + CGNG+R  V FL +          + T  T  G+
Sbjct: 76  RELLVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGV 135

Query: 106 LVAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMG 163
                  +G  +VDMG     W+ I P   +   MD     +     L +  P + VSMG
Sbjct: 136 KTVVRTGEG-YAVDMG----PWEFIFPGEATAKAMDS----LVTAEGLEVPRPALSVSMG 186

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKH--PMFSEGVNLSIARVT------SLESLDLRTW 215
           NPH +  + +     +LA      A    P+ + G N+     +       + S+ +R  
Sbjct: 187 NPHTVVALAE---LSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVH 243

Query: 216 ERGVGLTAACGSAACASVVA 235
           ERGVG T +CG+ ACA+ VA
Sbjct: 244 ERGVGETQSCGTGACAAAVA 263


>gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 304

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107
           F+   N DGS  + CGNG+R   R+L              T  G+               
Sbjct: 67  FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 126

Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
              +  G+I+V MG  +L  + + +   AR +           P  H        VSMGN
Sbjct: 127 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 167

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV+D  +  +L         H ++ +GVN+          + +R  ERG G T +
Sbjct: 168 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 226

Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A    EG
Sbjct: 227 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 286

Query: 278 KL 279
            +
Sbjct: 287 TI 288


>gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 45/242 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL-------------V 107
           F+   N DGS  + CGNG+R   R+L              T  G+               
Sbjct: 81  FMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAVPGADGT 140

Query: 108 AKENRDGSISVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
              +  G+I+V MG  +L  + + +   AR +           P  H        VSMGN
Sbjct: 141 TARSAPGAITVSMGRAVLPAETVTVGVGARQW-----------PTTH--------VSMGN 181

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV+D  +  +L         H ++ +GVN+          + +R  ERG G T +
Sbjct: 182 PHAVAFVDDLDHAGNLHEEPTRTPSH-VYPDGVNVEFVADRGERHVAMRVHERGSGETRS 240

Query: 225 CGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A    EG
Sbjct: 241 CGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEG 300

Query: 278 KL 279
            +
Sbjct: 301 TI 302


>gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 294

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%)

Query: 10  KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57
           K +G GN  ++  D  G H     D I           D ++ I           HD Q 
Sbjct: 3   KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 62

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                V+ F+   N DG+  + CGNG R   +FL  +            G+L  +E    
Sbjct: 63  MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 110

Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162
            +    G  +     +P    L R   ++D   + +G  +   +  P          V M
Sbjct: 111 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 168

Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211
           GNPH +  VED   +  L   G L L + P  S     G N+  AR+ +L++        
Sbjct: 169 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 226

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +R +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D++ V +TG A
Sbjct: 227 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 284

Query: 272 KKEWEGKL 279
               E +L
Sbjct: 285 ALTAEFRL 292


>gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 300

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%)

Query: 10  KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57
           K +G GN  ++  D  G H     D I           D ++ I           HD Q 
Sbjct: 9   KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 68

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                V+ F+   N DG+  + CGNG R   +FL  +            G+L  +E    
Sbjct: 69  MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 116

Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162
            +    G  +     +P    L R   ++D   + +G  +   +  P          V M
Sbjct: 117 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 174

Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211
           GNPH +  VED   +  L   G L L + P  S     G N+  AR+ +L++        
Sbjct: 175 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 232

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +R +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D++ V +TG A
Sbjct: 233 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 290

Query: 272 KKEWEGKL 279
               E +L
Sbjct: 291 ALTAEFRL 298


>gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 86

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
          M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1  MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64 IRIINCDGSEVQSCGNGMRCVVR 86
           RI N DGSEV  CGNG RC  R
Sbjct: 61 YRIFNADGSEVSQCGNGARCFAR 83


>gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 300

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 90/221 (40%), Gaps = 34/221 (15%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENR 112
           A  + F+   N DGS  + CGNG+R    +L +   ++ +SF   T   I+ + V  +  
Sbjct: 68  AGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHVTVIPDPL 127

Query: 113 DGSIS---VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            G      VDMG+    W+L     +FD        +        R    V MGNPH + 
Sbjct: 128 GGDTPWYKVDMGK----WQLPGGGEAFDAT------VETTGVRVARPGLTVDMGNPHTVV 177

Query: 170 FVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV-----TSLESLDLRTWERGVGL 221
                L H +      L       P    G N+    +      +  +L +R  ERGVG 
Sbjct: 178 A----LAHAEELQAAKLHEPPHVEPTPPAGTNVEYIVIEPDNDPTTGTLRMRVHERGVGE 233

Query: 222 TAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIE 258
           T ACG+ ACAS +A    +G   +     +V   GG + IE
Sbjct: 234 TYACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIE 274


>gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
 gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
          Length = 259

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 39/284 (13%)

Query: 8   FAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K +G GN  ++ID R G  D+++   I  L  D         LI     +  D  +  
Sbjct: 5   FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKL-CDRRFGVGADGLIKINSISGYDFEVDY 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DGS+   CGNG RC V F     + +   +F  I G+                E + 
Sbjct: 64  YNSDGSK-SFCGNGARCSVAFAHELGIIKDHVSFMAIDGVH---------------EAVK 107

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
              L+ L  + D  + D  H            FV++ G+PH I F E+ +  +D+ S+G 
Sbjct: 108 KGSLVFLKMN-DVSEIDVSH----------KEFVLNTGSPHFIHFTEN-VADFDIVSYGK 155

Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG--CLHK 241
            +     +  EG+N++        S +++T+ERGV   T +CG+   A+ +A G   L  
Sbjct: 156 QIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLIV 215

Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                +VK  GG L + +   N    ++++ G A+  ++G+ ++
Sbjct: 216 GEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259


>gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 357

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 123/308 (39%), Gaps = 56/308 (18%)

Query: 10  KMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-----------HDFQD 57
           K +G GN  ++  D  G H     D I           D ++ I           HD Q 
Sbjct: 66  KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 125

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                V+ F+   N DG+  + CGNG R   +FL  +            G+L  +E    
Sbjct: 126 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQ------------GMLELEEGDAF 173

Query: 115 SISVDMGEPILDWKLIP----LARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSM 162
            +    G  +     +P    L R   ++D   + +G  +   +  P          V M
Sbjct: 174 KLGTRAG--VKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDM 231

Query: 163 GNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSE----GVNLSIARVTSLES------LD 211
           GNPH +  VED   +  L   G L L + P  S     G N+  AR+ +L++        
Sbjct: 232 GNPHVVTVVED--AYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDAS 289

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +R +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D++ V +TG A
Sbjct: 290 MRVYERGCGETMACGTGLCATAIVLRAKTQIDH-WRIRIPGGIVRVDVTDDS-VMLTGAA 347

Query: 272 KKEWEGKL 279
               E +L
Sbjct: 348 ALTAEFRL 355


>gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614]
 gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614]
          Length = 279

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 41/280 (14%)

Query: 8   FAKMEGIGNK-ILVIDMRGC-HDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA-- 62
           F K  G  N  +L+ D+ G  H ++++D + AL         D ++ +        DA  
Sbjct: 15  FLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRV-----LRTDAGW 69

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVD 119
           F+   N DGS  + CGNG+R  VR L         +    +T  G+ V   + D  I+ D
Sbjct: 70  FMDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDGD-LITAD 128

Query: 120 MGEP-ILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P +L   ++ +   S+           P  H        V MGNPHA+ FV+    H
Sbjct: 129 MGRPRVLGETVVGVGTVSW-----------PARH--------VDMGNPHAVAFVDSLDPH 169

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +    +  ++ P  F +G N+          + +R  ERG G T +CG+ ACA +VA+
Sbjct: 170 GPVGPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAA 229

Query: 237 GCL-----HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
                      + A  V + GG L + W  ++ V +TG A
Sbjct: 230 AVADGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPA 269


>gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
 gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
          Length = 275

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 25/222 (11%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L  T       F   T  G      + D S++V M
Sbjct: 66  FMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTVHM 125

Query: 121 GEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G   +    + +   R F  +                    V +GNPH +  ++DD+   
Sbjct: 126 GPATITGTSVTVVAGRPFSGV-------------------AVDVGNPHLVSLLDDDVAGL 166

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL    +    H +F  GVNL         +L +R  ERGVG T ACG+   A+V A+  
Sbjct: 167 DLREQPDF--DHDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           L  T+   S   + GG +          ++G A+    G+LD
Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGASTLSGPAEIVARGELD 266


>gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
 gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
          Length = 273

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 21/165 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L          +   T  G+        G +SVDM
Sbjct: 69  FMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGPSGDVSVDM 128

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P++               R R  +   +   LR    VSMGNPH    V+  +   DL
Sbjct: 129 GAPLV-------------QGRGRARLAGEDFTGLR----VSMGNPHLACPVDRPVAELDL 171

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
                +  +   F +GVN+ + R+     +++R  ERG G T +C
Sbjct: 172 TRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSC 214


>gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 303

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 102/242 (42%), Gaps = 49/242 (20%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-------LVAKENRD 113
           F+   N DGS  + CGNG+R   R+L     +     +  T  GI        V      
Sbjct: 78  FMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHLAKAVPGSGVA 137

Query: 114 GSISVDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           G I+V MG  +L    + ++   RS+                  RN   V+MGNPHA+ F
Sbjct: 138 GDITVSMGRAVLPEDGVTVSVGGRSWPA----------------RN---VNMGNPHAVAF 178

Query: 171 VEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           VE      +L   G+LL   P     ++ +GVN+          + +R  ERG G T +C
Sbjct: 179 VE------ELDHAGDLLTVPPFTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETRSC 232

Query: 226 GSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA  VA+      + AV       +V + GG L I    +  + MTG A    EG 
Sbjct: 233 GTGACAVAVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAEGM 292

Query: 279 LD 280
           +D
Sbjct: 293 ID 294


>gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
 gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
          Length = 314

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 108/257 (42%), Gaps = 43/257 (16%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLI---------H 53
           F+K  G GN  +LV D  G H  I +  + AL    N H     D ++            
Sbjct: 21  FSKGHGTGNDFVLVADPEGEH-TIDAGHVAALC---NRHLGIGGDGLIRAVPSRFLPEGR 76

Query: 54  DFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGIL 106
           +   A+ DA  F+   N DGS  + CGNG+R  V FL +          +    T  G+ 
Sbjct: 77  EILAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLK 136

Query: 107 VAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGN 164
                 DG  +VDMG     W+ I P   +   MD     +     L +  P + VSMGN
Sbjct: 137 TVVRTADG-YAVDMGP----WEFIFPGEATAKAMDS----LVTAEGLEVPRPALSVSMGN 187

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERG 218
           PH +  + + L   +        A  P+ + G N+     +       + S+ +R  ERG
Sbjct: 188 PHTVVALAE-LGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERG 246

Query: 219 VGLTAACGSAACASVVA 235
           VG T +CG+ ACA+ VA
Sbjct: 247 VGETQSCGTGACAAAVA 263


>gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
 gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
          Length = 279

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 124/293 (42%), Gaps = 52/293 (17%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56
           F KM+G GN  +VID R             +S +D   + + +  H F            
Sbjct: 11  FYKMQGSGNDFIVIDNRA----------KTISPEDMPRWAKTLCPHAFSIGADGIIFLEI 60

Query: 57  DASVDAFIR--IINCDGSEVQSCGNGMRC--VVRFLTSRMKRKSFTFETIRGILVAKENR 112
           D S  A  R    N DGS  + CGNG RC  ++ ++      K         +L      
Sbjct: 61  DDSGQAATRWHFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHL-------MLTDAGTV 113

Query: 113 DGSISVDMGEPILDWKLIP---LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +  + GE  +D +L P   +A +F  +D D       +  F  +    + G PHA+ 
Sbjct: 114 HAQVFPEAGE--VDVQLTPARDMALNF-TLDLD-------DRTFAAH--FANTGVPHAVI 161

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGS 227
            V  D+   D+   G  +  H  F+  G N +  +V S   L LRT+ERGV   T ACG+
Sbjct: 162 -VTPDVKSIDVKGLGAKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGT 220

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLL-IEWHDNNHVFMTGEAKKEWEGKL 279
            A ASV  +  L        V   GG +L I  H ++ +F+ G+A+  ++G+ 
Sbjct: 221 GAAASVAVAHALGLCESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272


>gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21]
 gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21]
          Length = 263

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 40/282 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++ID R    +    A+ A   D       D +ML+   Q A  D  + 
Sbjct: 3   FFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFEMV 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG+    CGNG RC+V F     +  KS  F  + G   A  N             
Sbjct: 61  YYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATIN-----------DT 109

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW  + +    + +++D             + FV++ G+PH +  V  DL + D+ + G
Sbjct: 110 ADWVSLKMI-DVEHIEKD------------GDDFVLNTGSPHYVKEVV-DLKNLDVFAAG 155

Query: 185 NLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +  +  + + G+N++     + +   +RT+ERGV   T ACG+   A  +A    H  
Sbjct: 156 RAIRYNATYKQAGINVNFVEAVN-DGYQVRTYERGVEDETLACGTGVTAVALAMAWHHNR 214

Query: 243 --NRAVSVKMLGGGLLIEW-HDNNHVF----MTGEAKKEWEG 277
               +  +K +GG L I + +  N VF    + G AK  +EG
Sbjct: 215 LGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256


>gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
 gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
          Length = 322

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 101/254 (39%), Gaps = 37/254 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------ 55
           F+K  G GN  ++I   G    +T++ +  L  D +       LI               
Sbjct: 29  FSKGHGTGNDFVLIADPGDAHEVTAEQVAQLC-DRHVGIGGDGLIRAVPSRFLPEGRVAL 87

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
            QD   + F+   N DGS  + CGNG+R  V FL +         ++ T  T  G+    
Sbjct: 88  EQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKVV 147

Query: 110 ENRDGSISVDMGEPILDWK-LIPLARSFDKMDRDRFHIGPVNHLFLRNP-FVVSMGNPHA 167
              +G  +VDMG     W+ L P   +   MD     +     L +  P   VSMGNPH 
Sbjct: 148 RTVNG-YAVDMGP----WEFLFPEEATSKAMDA----LVSAEGLEVPRPGLSVSMGNPHT 198

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGL 221
           +  + + L               P  + G N+             + ++ +R  ERGVG 
Sbjct: 199 VVALAE-LSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGE 257

Query: 222 TAACGSAACASVVA 235
           T +CG+ ACA+ VA
Sbjct: 258 TQSCGTGACAAAVA 271


>gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
 gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
          Length = 424

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 25/236 (10%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
           Q A  + F+   N DGS  + CGNG R    FL     +   +F   T  GI   +   +
Sbjct: 204 QAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVRVVPE 263

Query: 114 GSISVDMGEPILDWKL--IPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           G  +VD+G     W+      AR   FD M R R H  PV  L         +GNPHA+ 
Sbjct: 264 G-FAVDLGP----WRYGDEQGARRDGFDIMVRPR-HGKPVPALTF------DLGNPHAVV 311

Query: 170 FVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
            + D  +L + DL +  ++    P    G+N+   +      + +R  ERGVG T +CG+
Sbjct: 312 MLPDGIELENLDLTAPPDVQPAQP---NGINVEFVKAVGPAHIAMRVHERGVGETRSCGT 368

Query: 228 AACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A A+ +A+             V + GG L +     N V + G A+   +G + +
Sbjct: 369 GAAAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424


>gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX]
 gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX]
          Length = 274

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 21/167 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L       +  FE  T  G        DG+I+VDM
Sbjct: 71  FMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVLEPDGNITVDM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+   +++    +       R   GPV+         +S+GNPH    V   +   DL
Sbjct: 131 G-PV---RILGPGSA-------RLADGPVHGTR------ISVGNPHLACRVARPVAEVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           ++   L A+   F +G N+ + R  +   L++R +ERG   T +CG+
Sbjct: 174 SAPPLLRAEE--FPQGANVEVFREVASGVLEMRVYERGAAETRSCGT 218


>gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2]
 gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1]
 gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3]
 gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08]
          Length = 274

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 35/291 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS------TDDNTHFDQIMLIHDFQDASVD 61
           F K  G GN  +++D    HD +T + +  L         D T   Q +   D +D + D
Sbjct: 5   FWKGHGTGNDFVIVDR---HDPLTPEQVRWLCHRRFGIGADGTL--QALRARDVEDWNGD 59

Query: 62  A---FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI 116
               F+   N DG+  + CGNG+R   R+L     M        T  G+   + + DG I
Sbjct: 60  PDLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDGDI 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV MG      ++ P   + +  D               +   V +GNPHA+   +    
Sbjct: 120 SVTMGTV----RIEPDDVTIEHQDT------------WWSACKVDVGNPHAVVVTDHTTV 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                           F +GVN+         ++ +R  ERG G T +CG+   A     
Sbjct: 164 SGINLDDSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAATM 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTG 284
               +     +V + GG +++      D     +TG A     G++D+  G
Sbjct: 224 AARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274


>gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
 gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
          Length = 425

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 8   FAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R          +A+     +     D ++ +    + + D  I+
Sbjct: 91  FVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVNGA-DYNIK 149

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC  RF+    +     SFT  T  G ++ +   DG + VDM E
Sbjct: 150 IFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQVKVDMDE 209

Query: 123 PILDWKLIP 131
            I     IP
Sbjct: 210 HIPSGPDIP 218


>gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
 gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
          Length = 282

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 15/228 (6%)

Query: 57  DASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
           DA  DA   F+   N DGS  + CGNG+R     L       +  FE    IL     R 
Sbjct: 61  DAPPDAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFE----ILTRAGVRT 116

Query: 114 GSISVDMGEPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             I  +   P  DW + + +  S          I  V          V MGNPH + F+ 
Sbjct: 117 VDILEEPASPGGDWSVRVGMGASRSTQRARTVEIAGVRLTATD----VDMGNPHTVVFLP 172

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +L    L       A  P  + G N+ + R      + +R  ERGVG T +CG+   A 
Sbjct: 173 PELALEGL-DLTRRPALEPEPARGANVELVRERGPRHVAMRVHERGVGETRSCGTGVAAV 231

Query: 233 VVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            VA+      ++    +V + GG L + W +   V +TG A+   +G+
Sbjct: 232 AVAAALRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADGR 279


>gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
 gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
          Length = 314

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 104/264 (39%), Gaps = 49/264 (18%)

Query: 4   SMVDFAKMEGIGNK-ILVIDMRGC--------------HDNITSDA-INALSTDDNTHFD 47
           S + F+K  G GN  +LV D                  H  I  D  I A+ +       
Sbjct: 17  SGLAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGR 76

Query: 48  QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETI 102
           ++  +H       + F+   N DGS  + CGNG+R  V FL ++   +     + T  T 
Sbjct: 77  ELQAVH----PDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTR 132

Query: 103 RGILVAKENRDGSISVDMGEPILDWKLI----PLARSFDKM-DRDRFHIGPVNHLFLRNP 157
            G        DG  +VDMG     W+ I      AR+ D +   D   +        R  
Sbjct: 133 AGAKTVVRTDDG-YAVDMGP----WEFIFPGEATARAMDSLVTADGLEV-------PRPA 180

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLD 211
             VSMGNPH +  + + L   +           P  + G N+     +       + ++ 
Sbjct: 181 LSVSMGNPHTVVALAE-LSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTIT 239

Query: 212 LRTWERGVGLTAACGSAACASVVA 235
           +R  ERGVG T +CG+ ACA+ VA
Sbjct: 240 MRVHERGVGETQSCGTGACAAAVA 263


>gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
 gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
          Length = 303

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 27/230 (11%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS 115
           Q A+   F+   N DGS  + CGNG+R   R+L      ++  F      LV    R G 
Sbjct: 85  QPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLEEAGRF------LVG--TRIGP 136

Query: 116 ISVDMGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           + VD+     +  W   P  R   +   D   +  V          VS+GNPH +  V D
Sbjct: 137 VPVDVPPAGDVTAWLPAPELRGGGRARFDGRMLEGVR---------VSVGNPHLVCVV-D 186

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L   D      L +    F +G N+ +  +     L +R +ERGVG T +CGS ACA  
Sbjct: 187 TLADVDFTRAPVLDSDE--FPDGANVEVVEIERPGVLRMRVYERGVGETWSCGSGACAVA 244

Query: 234 VASGCLHKTNRAVS----VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    +  R       + + GG L I + D + V + G A    EG+L
Sbjct: 245 AVAEGAERIPRPADGWWRIVVPGGELRIRF-DGDRVALAGPAVVVAEGRL 293


>gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
 gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
          Length = 306

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 36/242 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D F+   N DG  VQ CGNG R    FL +    +R      T  G     L+A +    
Sbjct: 83  DWFMDYRNADGGAVQMCGNGARVFAHFLRANGLEERDEHVIGTRAGAKRVRLLAFDRGSA 142

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
            + V+MG   +  +      +     R  F           + F V +GNPH +      
Sbjct: 143 EVEVEMGRARVGGRSAASLPAEGTEGRRVF-----------DGFAVDVGNPHLVCLAPAL 191

Query: 173 --DDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             D L   DLA       + P     +F EGVN+      S E   LR  ERGVG T AC
Sbjct: 192 GLDGLAGLDLA-------RQPEYDRDVFPEGVNIEFVVPHSPEKATLRVHERGVGETKAC 244

Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           G+ + A        L      V+V   GG + +    +    ++G +     G+ D+  G
Sbjct: 245 GTGSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEFDL--G 302

Query: 285 KW 286
           +W
Sbjct: 303 QW 304


>gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 331

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 116/314 (36%), Gaps = 60/314 (19%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINA-------LSTDDNTHFDQIMLIHDFQDAS 59
             K  G GN  ILV D  G  D + ++A+ +       +  D      +   + +  D +
Sbjct: 11  LTKAHGTGNDFILVPDFAGTLD-LPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVA 69

Query: 60  VDA-----FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            D      F+   N DGS  Q CGNG+R  V +L  R++      +  R + VA      
Sbjct: 70  RDFPEAEWFMDYRNADGSIAQMCGNGLRVFVHYL--RIQ-GVIDLKPGRSVTVATRGGVK 126

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++S D     +D     L R  D  D  R  +  V     R    V+M NPH +  + D 
Sbjct: 127 AVSFDGAVYTIDMGEYGLPRG-DAGDDTRVAVPGVGE---RPALSVTMPNPHTVVLL-DS 181

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDL---------------- 212
                 A         P+  EG NL +       RV+    +DL                
Sbjct: 182 AEELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRADQG 241

Query: 213 --------------RTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG-GGLLI 257
                         R  ERGVG T ACG+  CA+ +A   L +  R   V++   GG L 
Sbjct: 242 LADRSVSPSNPALMRVLERGVGETLACGTGTCAAALAV-LLSRGEREGEVRLRSPGGPLT 300

Query: 258 EWHDNNHVFMTGEA 271
              +    F+TG A
Sbjct: 301 VRIEGGRAFLTGPA 314


>gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
 gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
          Length = 299

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 44/247 (17%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIR 103
           +QIM +   Q    + F+   N DGS  + CGNG R +  F          + F   T  
Sbjct: 64  EQIMAV---QAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRA 120

Query: 104 GILV------AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRN 156
           G+ +       K        V+MGE    WK+          + D + +  P N    R 
Sbjct: 121 GVKILTPRGNVKPYGANVFQVEMGE----WKI---------GETDAYEVTIPGNDGSARG 167

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSL 207
            F V MGNPH +  +ED      +    +L+ K   +P      N+   R+      T++
Sbjct: 168 TF-VDMGNPHVVAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAV 226

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNH 264
               +R  ERG G T +CG+  C    A+G + +    +S   + + GG L ++  D + 
Sbjct: 227 GEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDED- 281

Query: 265 VFMTGEA 271
           V +TG A
Sbjct: 282 VKLTGSA 288


>gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
 gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
          Length = 282

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 53/300 (17%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-----------ALSTDDNTHFDQIM 50
           + + V F K+ G GN  + ID R  H  ++ +A+             +  D     D   
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNR--HLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAP 61

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAK 109
             H+      D      N DGS  + CGN  RC  V  +          F T  GI+ A 
Sbjct: 62  QGHE-----ADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAV 116

Query: 110 ENRD-GSISVDMGEP-------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            + + G   V++  P        L+ +  P    F                       V+
Sbjct: 117 ADVEAGYAKVELTRPRDLAAGTTLELEGTPFTVHF-----------------------VN 153

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV- 219
            G PHA+ F  D +   DL   G  L  HP FS  G N + A +    ++ LRT+ERGV 
Sbjct: 154 TGVPHAVVF-SDSVDGLDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVE 212

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T ACG+ A A+   +  L  T+ +V V+  GG +L    ++  +F++G+A + + G++
Sbjct: 213 DETYACGTGAAATAFIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272


>gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
          Length = 261

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 39/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    D    D +  L         D  +L+ +      D  
Sbjct: 3   IPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V+F     +   +  F  + G+  A           + E
Sbjct: 61  MVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAF----------IKE 110

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +++ +++ +A   D +  D F +              + G+PH +  VE  +  + +  
Sbjct: 111 KLVNLQMMNVA-GIDTLADDTFFL--------------NTGSPHYVKKVEK-IEQFPVFE 154

Query: 183 FGNLLAKHPMFSEG-VNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +     F+ G  N++   +     L +RT+ERGV   T +CG+   A+ +A+  L 
Sbjct: 155 TGKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEKLG 213

Query: 241 KTNRAVSVKMLGGGL---LIEWHDNNH--VFMTGEAKKEWEGKLDI 281
              + V +K LGG L    I+  D ++  VF+ G AK+ + G++++
Sbjct: 214 IAPQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEV 259


>gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
 gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
          Length = 257

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 51/289 (17%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K +G GN  +++D R     I       ++   +  F    D  +L+ +  D +VD  
Sbjct: 3   FYKYQGTGNDFIIVDNR--LQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DG+E   CGNG RC+  F  L   +K ++  F  I G+  AK   D  + + M 
Sbjct: 59  MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEA-EFIAIDGLHKAKIKND-IVHLQMQ 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +       + + ++FD            +HLFL        G+PH +  V   L  +++ 
Sbjct: 117 D-------VSIVKAFD------------SHLFL------DTGSPHHVELVT-GLKDFEVK 150

Query: 182 SFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           + G+ +    P    G N++     S  +  +RT+ERGV   T +CG+   A  +A   +
Sbjct: 151 ANGSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALA---M 207

Query: 240 HKTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
           HK+ +     V++   GG L I ++ +      +++ G A K ++G+++
Sbjct: 208 HKSGKTKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256


>gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1]
          Length = 282

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 53/300 (17%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-----------ALSTDDNTHFDQIM 50
           + + V F K+ G GN  + ID R  H  ++ +A+             +  D     D   
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNR--HLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAP 61

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAK 109
             H+      D      N DGS  + CGN  RC  V  +          F T  GI+ A 
Sbjct: 62  QGHE-----ADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAV 116

Query: 110 ENRD-GSISVDMGEP-------ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            + + G   V++  P        L+ +  P    F                       V+
Sbjct: 117 ADVEAGYAKVELTRPRDLAAGTTLELEGTPFTVHF-----------------------VN 153

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV- 219
            G PHA+ F  D +   DL   G  L  HP FS  G N + A +    ++ LRT+ERGV 
Sbjct: 154 TGVPHAVVF-SDSVDGLDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVE 212

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T ACG+ A A+   +  L  T+ +V V+  GG +L    ++  +F++G+A + + G++
Sbjct: 213 DETYACGTGAAATAFIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272


>gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria
           immitis]
          Length = 106

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRG- 104
           DQ+++I D   ++ D F+ I N DGS+V+ CGN  RC V +LT   K   + T E +   
Sbjct: 17  DQVIVITD--SSTADCFMHIYNADGSKVEMCGNAARC-VGYLTMLEKDTEYATIELVNNR 73

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLA 133
           IL   +  D  I V+MG+P+L W  IPL+
Sbjct: 74  ILECFKVSDKFIKVNMGKPLLKWHEIPLS 102


>gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
 gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
          Length = 237

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 10  KMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           K    GN  +V D+ G   +D   S+ +   S D     D ++ +   +D     F+   
Sbjct: 5   KFTATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR----DGVIFVEK-RDGQF--FMDYF 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DG+    CGNG R  + +L  +  +K     F T  G +  K  ++G + + M     
Sbjct: 58  NKDGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNG-VMIKM----- 111

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                P +    K+  D F           + F++++G PH + FV D++   D+   G 
Sbjct: 112 -----PASNMPQKLTIDSF-----------SGFLLNVGVPHFVIFV-DNVETIDVNKIGK 154

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN- 243
            L +        N++  +V   +++ +RT+ERGV   T ACGS   AS       +K+N 
Sbjct: 155 QLREKL----NSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYV---FNKSNL 207

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269
             + VK  GG L + +  N+ +++ G
Sbjct: 208 EKIEVKARGGTLFVHFL-NDGIYLEG 232


>gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
 gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
          Length = 307

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 36/221 (16%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAK----EN 111
           D F+   N DGS  + CGNG+R    ++ +     S    T+R     G+          
Sbjct: 72  DWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAGLRAVSIDELSR 131

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           R   + V+MG+P    +++ LA +F         IG  N+        V +GNPH    +
Sbjct: 132 RHAVVGVNMGQP----EVLGLATAF---------IGSGNNALKFAGIGVDVGNPHLACVM 178

Query: 172 ED----DLYHYDLASFGNLL----AKHPMFSEGVNLSIARVTSLE---SLDLRTWERGVG 220
                  L   +L + G++     A   MF  G+NL I  VT L+   S+ +R  ERGVG
Sbjct: 179 PGLSAAGLAELELEAAGSVAKPVRADEAMFPNGLNLEI--VTPLDASDSVSMRVIERGVG 236

Query: 221 LTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWH 260
            T +CG+   A+ +A+     +T  AV+VK+ GG + ++ H
Sbjct: 237 ETRSCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVH 277


>gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
 gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
          Length = 250

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 94/224 (41%), Gaps = 32/224 (14%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +  N DGSE + CGNG R    +  S  +  K   F T+ G++ A    D   S      
Sbjct: 57  QFYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEADVVESQLTKPK 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           ILD K+    + +                     +++  G PH + FVE DL  +D    
Sbjct: 117 ILDRKIEENGKRW---------------------WLIDTGVPHLVTFVE-DLNQFDKNES 154

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  K   ++  VN  I R   LE++ +RT+ERGV   T ACG+   A+ + +      
Sbjct: 155 KRLRNK---YNANVNYGIIR--DLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           N  V+V    G  L   ++N  +F  G  KK +E     K G W
Sbjct: 210 NPTVTVVPKSGEELQLRYENEKLFFKGRVKKVFE---TFKEGIW 250


>gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803]
 gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803]
          Length = 262

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 126/285 (44%), Gaps = 42/285 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDAF 63
           F K +G GN  ++ID R     ++ +    ++   +  F    D ++L+ + +D   D  
Sbjct: 5   FYKYQGTGNDFVMIDNR--DKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     + + S  F  I G+  A      SI  D   
Sbjct: 63  MVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKA------SIEGD--- 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            ++  K+  +    +  D           +FL        G+PH I F E+ +   D+  
Sbjct: 114 -VVSLKMQNVESISENED----------FIFL------DTGSPHHILFTEN-VNKVDIKK 155

Query: 183 FGNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            G+ +     +  + G N++     + ++  +RT+ERGV   T +CG+   A  +A+   
Sbjct: 156 EGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAFKS 215

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
            KTN   V +   GG L + + +       V+++G A+  ++G++
Sbjct: 216 SKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260


>gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
 gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
          Length = 284

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 68/310 (21%)

Query: 8   FAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA---- 62
           F K  G GN  +V+ D  G  D   SDA  A+  D +       L+   + A++D     
Sbjct: 6   FTKGHGTGNDFVVLADPDGELD--LSDAQIAVLCDRHFGIGADGLLRVVRSAAIDEGAEA 63

Query: 63  -------FIRIINCDGSEVQSCGNGMRCVVRFLT--------------SRMKRKSFTFET 101
                  F+   N DGS+ + CGNG R   R+L+              +R   K+ T  +
Sbjct: 64  AASGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLT-RS 122

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            RG     E   G+ +++  + ++  K +P+AR    +D                     
Sbjct: 123 ERGY----EVDLGAFAIEATDTLVRAKGLPVARPGVGID--------------------- 157

Query: 162 MGNPHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTW 215
           +GNPH +  V  D  L   DL ++  +L   P     V   +     ++    ++ LR +
Sbjct: 158 VGNPHVVVAVASDAELEALDL-TYQPVLDPAPRHGANVEFVVPADPLVQEGVGAIRLRVF 216

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEA 271
           ERGVG T +CG+   A+ +A    H    A     +V   GG L +   D  HVF++G A
Sbjct: 217 ERGVGETLSCGTGVAAAALA--VRHWAGSAAPDVWTVDTPGGTLGVRVAD-GHVFLSGPA 273

Query: 272 KKEWEGKLDI 281
              + G++ +
Sbjct: 274 SLVFTGEVTL 283


>gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208]
          Length = 168

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 6/76 (7%)

Query: 160 VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           VS+ NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +  + +++ +RT+
Sbjct: 5   VSVPNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLNDDAIYVRTF 62

Query: 216 ERGVGLTAACGSAACA 231
           ERGVG T ACG+A  A
Sbjct: 63  ERGVGFTNACGTAMSA 78


>gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818]
          Length = 462

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 7/133 (5%)

Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLR 213
           R  ++V MGNPHA+  ++  +   D+   G+ L +    F + VN+   +V +   + LR
Sbjct: 331 RPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHVRLR 390

Query: 214 TWERGVGLTAACGSAACASVVASGCLHK---TNRAVSVKMLGGGLLIEW--HDNNHVFMT 268
            +ERG G T ACG+ A  + VA+  LH     +  ++V M GG L + W  H +  + MT
Sbjct: 391 IFERGAGETLACGTGA-CAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLTMT 449

Query: 269 GEAKKEWEGKLDI 281
           G A   + G + +
Sbjct: 450 GPATCCFAGAITL 462



 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 16/24 (66%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL 88
           RI N DG EV  CGNG RCV  F+
Sbjct: 146 RIFNADGGEVFQCGNGARCVAAFV 169


>gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
 gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
          Length = 236

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 38/216 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS    CGNG R   ++L  R  +K K FTF +          R G I V +
Sbjct: 50  FMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLS----------RAGEIKVIV 99

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178
            + I  W  +P      +M  D +             + V +G PH +  V+  D+L   
Sbjct: 100 DDSI--WVRMPGVSEKKEMKVDDYE-----------GYFVVVGVPHFVMEVKGIDEL--- 143

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASG 237
           D+   G  L     +  G N+    V   + L +RT+ERGV   T ACG+    SV A  
Sbjct: 144 DVEKLGRDL----RYKTGANVDFYEVLP-DRLKVRTYERGVERETKACGTGV-TSVFAVY 197

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
                 + V +++ GG L ++  +N  +F+ G+ K+
Sbjct: 198 RDKTGAKEVKIQVPGGTLFLK-EENGEIFLRGDVKR 232


>gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
 gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
          Length = 184

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 160 VSMGNPHAIFFVEDDLYHYD----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           VS+ NPH I FV+  +   D    LAS+ N  +++P F +GVN+S  +    +++ +RT+
Sbjct: 21  VSVPNPHLITFVDQAVLDSDKQEKLASYLN--SENPYFPDGVNVSFVKRLRDDAIYVRTF 78

Query: 216 ERGVGLTAACGSAACA 231
           ERGVG T ACG+A  A
Sbjct: 79  ERGVGFTNACGTAMSA 94


>gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
 gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
          Length = 314

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 39/251 (15%)

Query: 53  HDFQDASVDA-FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI---- 105
           HD Q A+ +  F+   N DGS  + CGNG+R     L ++   + + F  +T  G+    
Sbjct: 77  HDAQGANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHIT 136

Query: 106 --LVAKENRDGSIS--VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
              +  E+ +GS    V++G   +    +   R  D               F      V 
Sbjct: 137 IHSLTGEDPNGSTHAVVEVGMGPVGVTGVSTGRMGD---------------FEFAGLGVD 181

Query: 162 MGNPHAIFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLD------LR 213
           +GNPH +  V   L    LA  +F      H  F EGVN+ I  VT  E+ D      +R
Sbjct: 182 VGNPH-LAAVIPGLTPVQLAELAFEQPAFDHEFFPEGVNVEI--VTDPETADGDMRVGMR 238

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            WERGVG T +CG+   A+  A+       N  ++V + GG L I  +D     MTG + 
Sbjct: 239 VWERGVGETRSCGTGTVAAARAALADAGVENGTITVDVPGGTLTIAIND-GEATMTGPSV 297

Query: 273 KEWEGKLDIKT 283
               G++ +K+
Sbjct: 298 IVARGEVSLKS 308


>gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 268

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 71/308 (23%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM----------LIH 53
           +++ F K +G GN  ++ID R          +N    +D     ++           LI 
Sbjct: 2   TVIHFYKYQGAGNDFIMIDNR----------MNTFPKEDTKLIARLCERRFGVGADGLII 51

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111
              D+  D  +   N DG+    CGNG RC+V F      + +   TF    G       
Sbjct: 52  LENDSKTDFSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDG------- 104

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFF 170
                               L ++F K D     +  V+ +  ++    ++ G+PH +  
Sbjct: 105 --------------------LHKAFFKNDLIHLQMQDVSDIEKVKKGLFLNTGSPHYVEI 144

Query: 171 VEDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           V+D L   D+   G  +    P   EGVN++     +     +RT+ERGV   T +CG+ 
Sbjct: 145 VKD-LDSMDVKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTG 203

Query: 229 ACASVVASGCLHKTNRA----VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKK 273
           A A+ +A   +HKT +     + ++  GG L + +            +  +V++ GEA+ 
Sbjct: 204 ATATAIA---MHKTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEF 260

Query: 274 EWEGKLDI 281
            +EG + I
Sbjct: 261 VFEGTISI 268


>gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 279

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 34/276 (12%)

Query: 9   AKMEGIGNKILVID-MRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            KM+G GN  L++D M+          I+ AL+T  +T  D I+ +   Q       ++I
Sbjct: 6   TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            + DG+E   CGNG+RC  R+      R S  F  I G        DG   V +    ++
Sbjct: 61  FDRDGTEETMCGNGLRCATRYFRDTYVR-SNVFNIITG--------DGLKEVFVDNDCVE 111

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
             L   AR + ++D++       ++++   P VV +G+   I           L +  +L
Sbjct: 112 VNL-GAARDYRQIDQN------CHYVYTGVPHVVVIGS--EISLETARAQGQSLRNDKSL 162

Query: 187 --LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             L  HP   EGVN++    T+   + LRT+E GV  +T +CG+ + AS   +  +   +
Sbjct: 163 CELVGHP---EGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAKVFGID 219

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    LGG L I  +D   + ++G  +  ++GK+
Sbjct: 220 LPILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252


>gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
          Length = 263

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 42/287 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K +  GN  ++I+      ++    I  L   +     D ++LI   ++   D +++ 
Sbjct: 5   FFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIKNY--DFYMKY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG E   CGNG RC V F      + +K+  F+TI G   A  N++  +S++M    
Sbjct: 63  YNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINKN-IVSINM---- 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + + +     ++D D         +FL      + G+PH I F++         +  
Sbjct: 118 TNVEFLTV-----EVDSDS--------IFL------NTGSPHHIIFIKKIENINRNINIK 158

Query: 185 --NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L +       GVN++  ++       +RT+ERGV   T +CG+   ASV+A+   HK
Sbjct: 159 GRKLQSSKKYLKTGVNVNFVQINK-HIFYVRTYERGVENETLSCGTGVTASVIAA--YHK 215

Query: 242 TNRAVS---VKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                    VK  GG L +++         +F+ GE    ++G + I
Sbjct: 216 KKIFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262


>gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
 gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
          Length = 304

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 117/287 (40%), Gaps = 48/287 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            + E   +++  +D R  H  I  D +  L+  ++        I + ++   + F+   N
Sbjct: 33  GRFEPTADEVRHLDDR--HFGIGGDGVIRLAHPEDVSDLTAEQIAECREDGAEWFMDYRN 90

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS--------V 118
            DGS  Q CGNG R +  F   R   K  +F   T  G+ V      GS+         V
Sbjct: 91  ADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL--GSVEGLGRNVFRV 148

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG     WK         + + D F +  P      R  + V MGNPH +  +ED    
Sbjct: 149 DMGA----WK---------RGEVDAFEVTIPGTAGSARGTY-VDMGNPHVVAVIEDGKAT 194

Query: 178 YDLASFGNLLAK---HPMFSEGVNLSIARVTS------LESLDLRTWERGVGLTAACGSA 228
                  +L+ K    P+     N+   R+ +      L +  +R  ERG G T +CG+ 
Sbjct: 195 LPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNERGCGETLSCGTG 254

Query: 229 ACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            CA+ V     +G  H T     + + GG L I+  D + V +TG+A
Sbjct: 255 LCATAVTLRAKTGIDHWT-----IAVRGGVLRIDVSDTD-VKLTGDA 295


>gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis]
 gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 307

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 34/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIH-DFQDASV 60
            +F     +GN  +V+D RG        A+  L    + HF    D ++       +A  
Sbjct: 30  AEFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLC---DRHFGVGADGVLFGPLGAPEAGE 86

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK--ENRD 113
              +R+ N DG+E +  GNG+R     L           + F   T  G +  +  +   
Sbjct: 87  PVRLRMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEFPLRTAAGDVPVRILDLAS 146

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G++ V MG P           S D   R R  +  V++           GNPHA+  + +
Sbjct: 147 GTVQVGMGRPEFGAT----GESLDVGGR-RLAVTSVHN-----------GNPHAVVPLAE 190

Query: 174 DLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
                 LA   G L+A H  F    N+    +    ++ +  +ERG G T A GS+ACA+
Sbjct: 191 --ISAGLARELGPLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAA 248

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             A+  L  T   V V+M GG + +    +  V MTG A++   G+ 
Sbjct: 249 AAAAHALGLTGPDVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRF 295


>gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
 gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
          Length = 332

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 16/174 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG---ILVAKENRDGSISVDMGEPI 124
           N DGS  + CGNG+RCV R +  R +  +    T  G   +    +   G  SV +  P 
Sbjct: 67  NPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGVWSVAVELPP 126

Query: 125 LDWKL--IPLARS-FDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDL 180
           + ++   +P+  +  + +D     + P  H  LR  F  V++ N H +  V DD    +L
Sbjct: 127 VTFRAADVPVVTTGAEHVD----TVIPTLHPALR--FTGVAVPNSHLVAVV-DDYDENEL 179

Query: 181 ASFGNLLAKHPM-FSEGVNLSIAR-VTSLESLDLRTWERGVGLTAACGSAACAS 232
            + G   A  P+    G N+S  R +T+   + +RT+ERG GLT +CGS   AS
Sbjct: 180 VAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233


>gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100]
 gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100]
          Length = 285

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 112/290 (38%), Gaps = 49/290 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----------------NITSDAINALSTDDNTHFDQI 49
           +   KM G GN   +ID R                     +  D +  LSTD        
Sbjct: 7   LSITKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDG------F 60

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGIL 106
           +LI D  +   D      N DGS  + CGN  RC  RF    ++ K      F+T  G++
Sbjct: 61  LLIEDGSEG-FDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLV 119

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           VA+   +  I V M E     +LI L         ++F +             V+ G PH
Sbjct: 120 VAQILGNSRIRVKMPEARFIQELIELKTK--SSSTEKFAL-------------VNTGVPH 164

Query: 167 ---AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLT 222
               I    D +   D+A      + H +   G N++     S   +   T+ERGV   T
Sbjct: 165 LVQKIHAFSDTVALKDMAR--EARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYT 222

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEA 271
            ACG+ A A+        K + +V V+M GG + + +   + H  M G+A
Sbjct: 223 LACGTGAVAAAFVHNKETKES-SVEVQMPGGSMQVTFVSGDPHPLMEGDA 271


>gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
 gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 285

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 15/222 (6%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISV 118
           + + N DGS     GNG+R   R+L      +S +FE       + I V +        V
Sbjct: 58  LEVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLV 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVED-DL 175
            +G   LD   +P+      MD  +  +    H+  R   +  V +GNPH +   +  D 
Sbjct: 118 SLGSFCLDSSKVPVM-----MDAKKTVLNETLHIAGREISISCVDIGNPHCVVLGQAADR 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G L+++H +F +  N+    + S   +++ TWERG G T A GS+ACA+   
Sbjct: 173 ATAEL--LGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAV 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              L   +  V+V M GG + +    ++ + + G     + G
Sbjct: 231 CHTLGLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG 272


>gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
 gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
          Length = 281

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 109/281 (38%), Gaps = 27/281 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G  N  +++  R    ++T + + AL  D         +I    DA    F+   
Sbjct: 16  FLKGHGTENDFVLLPDRADELDLTENRVRAL-CDRRAGLGGDGVIRVVPDADGGFFMDYR 74

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGS  Q CGNG R   R++            F T  G  VA     G +S++MG   L
Sbjct: 75  NADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPATL 134

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LYHYDLAS 182
                            R  IG      +     V +GNPH +     D   L   DL+ 
Sbjct: 135 GVA-------------SRAAIGDAAFAGI----AVDVGNPHLVCLDIGDRSTLAALDLSH 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-K 241
                 +  +F +GVN+          + +R  ERGVG T +CG+   A   A+     +
Sbjct: 178 APEFDPQ--VFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGR 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           T   V V + GG + ++      + +TG A    +G+++ +
Sbjct: 236 TQGRVLVNVPGGQVTVDIAPGTSM-LTGPAVIVAQGRVEPQ 275


>gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 271

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 21/168 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L     ++   F   T  G    +   DG I++DM
Sbjct: 71  FMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQVEADGGITIDM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G      ++     S  K+ R   H              +S+GNPH    V   +   DL
Sbjct: 131 G------RVEMQGTSSAKLARQVVH-----------GEQISVGNPHLACEVTVPVAEVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                L  +   F  G N+ + R  +   L++R +ERG G T +CG+ 
Sbjct: 174 GELPVLDVE--AFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTG 219


>gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8]
 gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8]
          Length = 236

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 40/217 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS    CGNG R   ++L  R  +K K FTF +          R G I V +
Sbjct: 50  FMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLS----------RAGEIKVIV 99

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178
            + I  W  +P      +M  D +             + V +G PH +  V+  D+L   
Sbjct: 100 DDSI--WVRMPGVSEKKEMKVDGYE-----------GYFVVVGVPHFVMEVKGIDEL--- 143

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASG 237
           D+   G  L     +  G N+    V   + L +RT+ERGV   T ACG+   +  V   
Sbjct: 144 DVEKLGRDLR----YKTGANVDFYEVLP-DRLKVRTYERGVERETKACGTGVTSVFVVY- 197

Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
              KT  + V +++ GG L ++  +N  +F+ G+ K+
Sbjct: 198 -RDKTGAKEVKIQVPGGTLFLK-EENGEIFLRGDVKR 232


>gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 238

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 48/272 (17%)

Query: 23  MRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDA------FIRIINCDGSEV 74
           MRG +   T +    + + +   +  ++ +L+  + D    A      F+   NCDG+  
Sbjct: 2   MRGAYYTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGRDGAIFVERDFMDYYNCDGNRA 61

Query: 75  QSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
             CGNG R  V F+  + KR    F +  G ++ K   D  +SV M  P           
Sbjct: 62  AFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKV--DDLVSVRMPSP-------RFLG 112

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
           +F++ D    + G           +V +G PH +  +E D    D   +  LL    ++ 
Sbjct: 113 TFEEED----YSGE----------IVVVGVPHLV--IEGDT---DKVDWNALLPLRHLYD 153

Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV----VASGCLHKTNRAVSVK 249
              N+++  V    SL +RT+ERGV G T ACGS A + V      +GC       V ++
Sbjct: 154 --ANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGC-----EKVILQ 206

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             GG L + + D +     G  K   E +L +
Sbjct: 207 ANGGDLTVSFRDGSAYLGGGVEKCSEELELQL 238


>gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R]
 gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 277

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 39/191 (20%)

Query: 54  DFQDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--- 105
           D + ++VD    F+   N DGS  + CGNG+R    +L SR  +   SF   T  G+   
Sbjct: 57  DVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHV 116

Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            ++  +     + VDMG        IP        D        +N         V MGN
Sbjct: 117 DILQADQHSAQVRVDMG--------IPDVTGLSTCD--------INGQVFAG-LGVDMGN 159

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLE--SLDLRTWER 217
           PH    V         ++  ++  + P F +     GVN+ I  VT LE  ++ +R WER
Sbjct: 160 PHLACVVP----GLSASALADMELRAPTFDQEFFPHGVNVEI--VTELEDDAVSMRVWER 213

Query: 218 GVGLTAACGSA 228
           GVG T +CG+ 
Sbjct: 214 GVGETRSCGTG 224


>gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
 gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
          Length = 313

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 105/265 (39%), Gaps = 52/265 (19%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---------------TDDNTH 45
           + ++ + FAK  G  N  +++D R    ++T + + AL+                     
Sbjct: 6   VPTTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALA 65

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFE 100
             + +L H+    +   F+   N DGS  Q CGNG+R    +L      +    +     
Sbjct: 66  EGRAVLAHE---PAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLG 122

Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-------IGPVNHLF 153
           T  G    ++   G  +VDMG     W         D   RD F        + P     
Sbjct: 123 TRAGARRVRKEDSGWYAVDMGV----WSF----PGGDAAVRDGFDAEVTVSGLEPAGTQV 174

Query: 154 LRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNL----SIARVTSL 207
            R    V +GNPH +  +   DDL   DL +  ++L   P+ +EG N+     +   TS+
Sbjct: 175 PRPALSVDLGNPHTVVALASLDDLDRADLHTAPDVL---PLPAEGTNVELVVPLGEETSV 231

Query: 208 ES-----LDLRTWERGVGLTAACGS 227
           +      + +R  ERGVG T +CG+
Sbjct: 232 DGTVVGRVRMRVHERGVGETRSCGT 256


>gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum]
 gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032]
          Length = 277

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 39/191 (20%)

Query: 54  DFQDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--- 105
           D + ++VD    F+   N DGS  + CGNG+R    +L SR  +   SF   T  G+   
Sbjct: 57  DVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHV 116

Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            ++  +     + VDMG        IP        D        +N         V MGN
Sbjct: 117 DILQADQHSAQVRVDMG--------IPDVTGLSTCD--------INGQVFAG-LGVDMGN 159

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-----GVNLSIARVTSLE--SLDLRTWER 217
           PH    V         ++  ++  + P F +     GVN+ I  VT LE  ++ +R WER
Sbjct: 160 PHLACVVP----GLSASALADMELRAPTFDQEFFPHGVNVEI--VTELEDDAVSMRVWER 213

Query: 218 GVGLTAACGSA 228
           GVG T +CG+ 
Sbjct: 214 GVGETRSCGTG 224


>gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
 gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
          Length = 277

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 122/288 (42%), Gaps = 39/288 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G GN  +V+D     +NI  D    A        +   D +++I   + A+  
Sbjct: 1   MNFWKMNGNGNDFIVVDATAA-ENIGLDWPAVARALCPRRQSIGADGLLVIERSKTANF- 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS-ISVD 119
            F+RI N DGSE + CGNG RC  RF     +  +S  FET+ G++ A+   DG  + ++
Sbjct: 59  -FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARV--DGRYVEIN 115

Query: 120 MG--EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG   P  +W            DR     G       R  F + +G PH + F  +++  
Sbjct: 116 MGRVRPEPEWS-----------DRTMTLEGET----FRATFAL-VGVPHLVLFSREEVGV 159

Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
                +G  L      F +G N++ A   +   +   T+ERGV  LT +CG+   A  +A
Sbjct: 160 DFARRWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALA 219

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           +     +     V   GG         N V +T     E+E  L   T
Sbjct: 220 ARLNGLSGPVTEVHNPGG--------TNRVSLTEMGDGEYEALLGGTT 259


>gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 299

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 38/252 (15%)

Query: 44  THFDQIMLIHDFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMK 93
           TH   +  ++D Q A     + D F+   N DGS  + CGNG R +  F     +  +  
Sbjct: 53  THPQAVSDLNDKQIAVCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPG 112

Query: 94  RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152
            + F   T  G+ V     D      +G+ +   ++     S+ + D D + +  P    
Sbjct: 113 GEPFRLGTRAGVKVLTSLGDVPT---LGKDVFQVEM----GSWKRGDLDGYEVTIPGTAG 165

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLES 209
             R  F V MGNPH +  +ED           +L+ K    P      N+   R+     
Sbjct: 166 SARGTF-VDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSE 224

Query: 210 LD------LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEW 259
            D      +R  ERG G T +CG+  CA+ +     +G  H T     + + GG L ++ 
Sbjct: 225 GDNEGNATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDV 279

Query: 260 HDNNHVFMTGEA 271
            DN+ V +TG A
Sbjct: 280 TDND-VKLTGSA 290


>gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3]
 gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3]
          Length = 260

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 22/219 (10%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N +GS    CGNG+RCV+  ++   K+     ET  GI   +      + VDM
Sbjct: 56  DAKLIIFNDNGSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYD 179
             P   +    L+ +   + ++ F I              + G PH + FVED      D
Sbjct: 116 TLPDWHYTRHLLSHTLPGVPKEVFSI--------------NTGVPHLVVFVEDVSCVPVD 161

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVA 235
           L  +G+ L  H  F  +G N++  +  S     +RT+ERG+    L    G+ A A VVA
Sbjct: 162 L--WGSFLRYHEDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAALVVA 219

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
                 +N  + ++     L+    D++ V++ G   KE
Sbjct: 220 RR-YGLSNTQIRIRTWSDVLMKISLDSDRVYLEGHVDKE 257


>gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
 gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
          Length = 267

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 38/285 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F K +G GN  ++ID R      T + +            D +ML+        D  
Sbjct: 2   IIKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG E   CGNG RC+V +      R     +T R  L A     G I++     
Sbjct: 60  MRYFNSDGREASLCGNGSRCIVAY----AHRLGLFLQTTR-FLAADGEHQGEITLQGVRV 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            ++             D  R  + P       + F +  G+PH +  V  D +  D+ + 
Sbjct: 115 KMN-------------DVSRITVTP-------DYFFLDTGSPHYVKVVA-DAFQTDVVTA 153

Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL-H 240
           G ++   P F   G N++    T    + + T+ERGV   T ACG+   A+ +++  L H
Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPTP-ACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212

Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLD 280
             +   +++  GG L + +    +NH   +++ G A+  + G+++
Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIE 257


>gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
 gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
          Length = 299

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115
           F+   N DGS  + CGNG R +  F     L  R   + F   T  G  IL +    +G 
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEG- 135

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               +G+ +   ++     S+ + D D + +  P      R  F V MGNPH +  +ED 
Sbjct: 136 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 186

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225
                     +L+AK    P      N+   R+      D      +R  ERG G T +C
Sbjct: 187 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 246

Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           G+  CA+ +     +G  H T     + + GG L ++  D++ V +TG A
Sbjct: 247 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 290


>gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5]
          Length = 268

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 47/228 (20%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHF----DQIMLIHDFQDA 58
           +V F K EG GN  ++ID R   +  ++DA  I AL    + HF    D +M +   +  
Sbjct: 2   LVSFVKYEGAGNDFILIDDR--EELFSADARLIAALC---DRHFGIGADGLMTLR--RSV 54

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK----ENRD 113
            +D  +R  N DGS  + CGNG RC   F     +  ++  F+   G+  A+    +NR 
Sbjct: 55  EMDCSMRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRT 114

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G I + M    ++   I   + +                     + ++ G PH + F E 
Sbjct: 115 GEIELGM----INVSEIRSGKGW---------------------WFLNTGVPHYVEFTE- 148

Query: 174 DLYHYDLASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGV 219
           +L   D+   G ++ +H    F +G N++ A +     + +RT+ERGV
Sbjct: 149 ELDGVDVKGLGRMI-RHDTARFPQGTNVNFAEIAGEGEIRMRTYERGV 195


>gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1]
 gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1]
          Length = 282

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115
           F+   N DGS  + CGNG R +  F     L  R   + F   T  G  IL +    +G 
Sbjct: 60  FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEG- 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               +G+ +   ++     S+ + D D + +  P      R  F V MGNPH +  +ED 
Sbjct: 119 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 169

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225
                     +L+AK    P      N+   R+      D      +R  ERG G T +C
Sbjct: 170 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 229

Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           G+  CA+ +     +G  H T     + + GG L ++  D++ V +TG A
Sbjct: 230 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 273


>gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 297

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 49/251 (19%)

Query: 51  LIHDFQDASVDA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTF 99
            + D  D  V A        F+   N DGS  + CGNG R +  F          + F  
Sbjct: 57  FVSDLSDDQVSAVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRL 116

Query: 100 ETIRG--ILVAKENRD----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152
            T  G  IL  + N          ++MGE    WK+          + D + +  P    
Sbjct: 117 GTRAGVKILTPRSNTKPYGANVFQIEMGE----WKV---------GETDAYEVTIPGTEG 163

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV----- 204
             R  F V MGNPH +  +ED      +    +L+ K    P+     N+   R+     
Sbjct: 164 SARGTF-VDMGNPHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQ 222

Query: 205 -TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWH 260
            T +    +R  ERG G T +CG+  C    A+G + +    +S   + + GG L ++  
Sbjct: 223 NTGVGEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVT 278

Query: 261 DNNHVFMTGEA 271
           D++ V +TG A
Sbjct: 279 DSD-VKLTGAA 288


>gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429]
 gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429]
          Length = 232

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 34/211 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+   N DGS+   CGNG R  + +L    K     F T  GI+  K   +  I + M  
Sbjct: 53  FMEYYNKDGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKILNE-KILIKMPN 111

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+       +AR   K++ + F           + +++++G PH + FV DD+ H D+ +
Sbjct: 112 PL-------VAR---KINVENF-----------SGYLLTVGVPHFVTFV-DDIEHIDVKN 149

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +          N++     S   + +RT+ERGV   T +CGS   AS +    L++
Sbjct: 150 IGKKIRNKL----DANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV---LNE 202

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           +   V  +   GG+L  +  N+  ++ G+ +
Sbjct: 203 SKVKVHTR---GGILHIYTLNDGFYLEGDVE 230


>gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 279

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 49/251 (19%)

Query: 51  LIHDFQDASVDA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTF 99
            + D  D  V A        F+   N DGS  + CGNG R +  F          + F  
Sbjct: 39  FVSDLSDDQVSAVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRL 98

Query: 100 ETIRG--ILVAKENRD----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHL 152
            T  G  IL  + N          ++MGE    WK+          + D + +  P    
Sbjct: 99  GTRAGVKILTPRSNTKPYGANVFQIEMGE----WKV---------GETDAYEVTIPGTEG 145

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV----- 204
             R  F V MGNPH +  +ED      +    +L+ K    P+     N+   R+     
Sbjct: 146 SARGTF-VDMGNPHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQ 204

Query: 205 -TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWH 260
            T +    +R  ERG G T +CG+  C    A+G + +    +S   + + GG L ++  
Sbjct: 205 NTGVGEATMRVNERGCGETLSCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVT 260

Query: 261 DNNHVFMTGEA 271
           D++ V +TG A
Sbjct: 261 DSD-VKLTGAA 270


>gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
 gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
          Length = 299

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRG--ILVAKENRDGS 115
           F+   N DGS  + CGNG R +  F     L  R   + F   T  G  IL +    +G 
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRGGVKILTSLGEVEG- 135

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               +G+ +   ++     S+ + D D + +  P      R  F V MGNPH +  +ED 
Sbjct: 136 ----LGKDVFRVEM----GSWQRGDVDGYEVSIPGTAGSARGTF-VDMGNPHVVAVIEDA 186

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAAC 225
                     +L+AK    P      N+   R+      D      +R  ERG G T +C
Sbjct: 187 FASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSC 246

Query: 226 GSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           G+  CA+ +     +G  H T     + + GG L ++  D++ V +TG A
Sbjct: 247 GTGLCATAITLRSKTGIDHWT-----ITVRGGTLRVDVTDDD-VTLTGSA 290


>gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
 gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
          Length = 272

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 91/228 (39%), Gaps = 31/228 (13%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L S        F   T  G      + DGS++V M
Sbjct: 59  FMDYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G   L  +   +             +G V    +     V +GNPH     +  +   DL
Sbjct: 119 GPVRLTGESTAV-------------LGGVEFAGVG----VDVGNPHLACVTDVPVAGLDL 161

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTS------LESLDLRTWERGVGLTAACGSAACASVV 234
               +  A   +F  GVN+    V +         L +R  ERGVG T +CG+   A+V 
Sbjct: 162 RDAPSHDAA--LFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVA 219

Query: 235 ASGCLHKTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +   L  T RA      ++ GG +    D     +TG A     G+LD
Sbjct: 220 S--WLRGTGRATGAADVLVPGGRVRVTVDEGGSTLTGPAVLLARGELD 265


>gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
          Length = 247

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 89/214 (41%), Gaps = 30/214 (14%)

Query: 65  RIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +  N DGSE   CGNG R C     T  +  K   F T  G+ +A E  +  +  ++  P
Sbjct: 57  QFYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAGV-IASEVIECVVETELTTP 115

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +      L+ SF++        G   H           G PH + FVE      D+A F
Sbjct: 116 KV------LSESFEEN-------GLTWHF-------CDTGVPHLVTFVE------DVALF 149

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
              +A+   +    N++ A +    +L +RT+ERGV   T ACG+   A   ++    + 
Sbjct: 150 DKTIARQMRYKYNANVNYAMLKE-NTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRV 208

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             +  V    G  L    ++  +F  GE +K +E
Sbjct: 209 GESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFE 242


>gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
 gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
          Length = 292

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 40/239 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSIS 117
           F+   N DG+  + CGNG+R    +L            +    T  G+   + N  G   
Sbjct: 73  FMDYRNADGTAAEMCGNGIRVFAHYLAENGFVDFEPGDTLPVGTRSGVRDVQRNMAG-YQ 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175
            DMG   LD    PL R+  ++D  R  +G            +++GNPH +  + D  +L
Sbjct: 132 ADMGRWSLDGGE-PLVRA-KELDVARPGLG------------INVGNPHVVVALADESEL 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAACGSAA 229
            H DL     +    P+   G N+             + S+ +R  ERG G T +CG+ A
Sbjct: 178 DHVDL---NYIPVIDPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHERGSGETLSCGTGA 234

Query: 230 CASVVA----SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281
            A+ +A    +G        V+V   GG +++      D  HV ++G A+  + G L++
Sbjct: 235 VAAALAIRHYAGAGAPNQWRVAVP--GGTVVVRMFPTEDGEHVSLSGPAELVYTGSLEL 291


>gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
          Length = 299

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 37/200 (18%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL----- 106
           D   + F+   N DGS  + CGNG R +  F     + S    + F   T  G+      
Sbjct: 71  DGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKTLRPL 130

Query: 107 --VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMG 163
             VA   RD    VDMG     W+         + D D F +  P      R  F V MG
Sbjct: 131 GDVAPYGRD-VFRVDMGS----WR---------RGDLDAFTVTIPGTPGAARGTF-VDMG 175

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRT 214
           NPH +  +ED +         +L+ K    P+     N    RV  +++        +R 
Sbjct: 176 NPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMRV 235

Query: 215 WERGVGLTAACGSAACASVV 234
            ERG G T +CG+  CA+ +
Sbjct: 236 NERGCGETLSCGTGLCATAI 255


>gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
          Length = 280

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 60  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 120 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 165

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 166 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 225

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 226 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 271


>gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
 gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8]
 gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 297

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 242

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 243 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288


>gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 297

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENRD---- 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 242

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 243 SCGTGLC----ATGIVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288


>gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
 gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
          Length = 263

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 63/298 (21%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI-----------MLIHD 54
           + F K +G GN  ++ID R           N +S +D    +++           +++ +
Sbjct: 3   LQFFKYQGTGNDFVMIDNRN----------NVVSKNDTKLINRLCDRKFGIGADGLILLE 52

Query: 55  FQDASVDAFIRI-INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR 112
             D   D F  +  N DG++   CGNG RC+V F     +      F  I G   A  ++
Sbjct: 53  HPDVEGDDFKMVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDK 112

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D  +++ M                 +   D +  G +  L          G+PH I F E
Sbjct: 113 DNVVNLQM-----------------QNVSDIYQSGNIAFL--------DTGSPHHIVFTE 147

Query: 173 DDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSAA 229
            D+ + D+   G  +     + E G N++    T  E +  +RT+ERGV   T ACG+  
Sbjct: 148 -DVKNLDVKEEGAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGV 206

Query: 230 CASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
            A  +A+   H +NR     V +++ GG L + +  +    + V++ G A   ++G++
Sbjct: 207 TAVAIAA---HHSNRTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261


>gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
 gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
          Length = 280

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 60  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 120 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 165

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 166 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 225

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 226 SCGTGLC----ATGIVLQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 271


>gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68]
          Length = 297

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGTEGSARGTF-VDMGNPHVVAVIE 182

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETL 242

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 243 SCGTGLC----ATGIVLQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288


>gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 292

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 42/243 (17%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKE 110
           +D   + F+   N DGS  + CGNG+R    FL           ++    T  G+   + 
Sbjct: 66  EDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGVRDVQR 125

Query: 111 NRDGSISVDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           +  G   VD+G     W+L    PL R+ D                 R    + +GNPH 
Sbjct: 126 SGSG-FQVDLGR----WELAGGEPLVRAKDLQ-------------VARPGLGIDVGNPHV 167

Query: 168 IFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR----VTSLESLDLRTWERGVGL 221
           +  +  ED+L   DLA F   L   P     V L +      V  +  + +R  ERG G 
Sbjct: 168 VVALSSEDELAEADLA-FVPQLDPEPAAGANVELVVPADPLVVDGVGHITMRVHERGSGE 226

Query: 222 TAACGSAACASVVASGCLHKTNRAVS----VKMLGGGL---LIEWHDNNHVFMTGEAKKE 274
           T +CG+ A A+ +A+   H    A      V++ GG L   +    D  HV ++G A+  
Sbjct: 227 TLSCGTGAAAAALAT--RHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELV 284

Query: 275 WEG 277
           ++G
Sbjct: 285 FDG 287


>gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
 gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
          Length = 249

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP-IL 125
           N DGS    CGNG R   ++ + +++    F   T  GI+    ++DG + V++  P IL
Sbjct: 61  NSDGSHADMCGNGSRAAAQYAVDNQLCTNVFDLVTGSGIVSVNVSKDG-VEVELTSPKIL 119

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             K I           D F  G + H +         G PH + FV  DL  +D+ +  +
Sbjct: 120 SNKPI-----------DEF--GKIWHFY-------DTGVPHLVSFVS-DLNEFDIQTCRD 158

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           L  K+       N+++A++ +  ++ +RT+ERGV   T ACG+   A    +      +R
Sbjct: 159 LRYKY-----NANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASR 212

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V    G  L    +N  +F  G+ K  ++  +D+
Sbjct: 213 CCKVYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249


>gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
 gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
          Length = 259

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 120/289 (41%), Gaps = 51/289 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVD 61
           + F+K +G GN  ++ID R   D    D    ++   +  F    D +ML+      S D
Sbjct: 3   ISFSKYQGTGNDFVIIDNR--LDIFPKDDTKLVAQLCDRKFGIGADGLMLLE--SHPSAD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F  +  +     TFE + G+  A   +DG + + M
Sbjct: 59  FRMVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATV-KDGIVHLKM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            + + + K  P                   + FL        G+PH I  V  D+    +
Sbjct: 118 -QDVAEIKTTP------------------EYSFL------DTGSPHHIKMVS-DVKTVAV 151

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-- 236
              G  +    ++ E G N++  +        +RT+ERGV   T +CG+   A  +A+  
Sbjct: 152 KEEGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHN 211

Query: 237 -GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEA----KKEWE 276
            G   K N  + V+  GG L + +         V++ G A    K EW+
Sbjct: 212 NGVTSKNNIQLDVE--GGKLAVSFTKTATGYTDVYLIGPATFVFKGEWQ 258


>gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.]
          Length = 256

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 54/291 (18%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASVDA 62
           +F K +G GN  +++D R   +    + +  +S   N +F    D ++LI +  D   D 
Sbjct: 4   NFYKYQGTGNDFIMVDNRA--EIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            +   N DGS+   CGNG RC V   R+L     + +F       I V     DG    +
Sbjct: 60  KMIYFNADGSQT-FCGNGGRCAVAFARYLNIIKNKTNF-------IAV-----DGPHFAE 106

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +   I+  K+I         D D   I         N      G  H +  V D L +Y 
Sbjct: 107 IKNNIVSLKMI---------DVDDIRI-------QENSVFAYTGTQHHVEMV-DSLDNYP 149

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           +   G  + +    + G N++     +  +  +RT+E+GV G T ACG+   A  +A   
Sbjct: 150 VYEKGKQI-RASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIA--- 205

Query: 239 LHKTNRAVS----VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           +HKT +  S    + + GG L + + + N     V++ G A   ++G++ I
Sbjct: 206 MHKTKKTTSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256


>gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 286

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 15/211 (7%)

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123
           N DGS  +  GNG+R   ++L     +++K FT  +  G   +   N +G+ +   MG  
Sbjct: 64  NPDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRA 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDL 180
                 +P+       +  R  I     +F R P+ V   S+GNPH +  + D++    +
Sbjct: 124 SFWSSDVPV-------EGPRREIINETMVFGRIPYPVTCLSVGNPHCVILM-DEISKDLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E +N  I +V     +    +ERG G T A GS  CA+  A+  L 
Sbjct: 176 CRIGKYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            T+  + V+M GG L IE  ++  V MTG+ 
Sbjct: 236 LTDPKMVVQMPGGTLEIEIDEDGVVHMTGDV 266


>gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRG--ILVAKENR----D 113
           F+   N DGS  + CGNG R +  F          + F   T  G  IL  + N      
Sbjct: 77  FMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGA 136

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVE 172
               V+MGE    WK+          + D + +  P      R  F V MGNPH +  +E
Sbjct: 137 NVFQVEMGE----WKI---------GETDAYEVTIPGAEGSARGTF-VDMGNPHVVAVIE 182

Query: 173 DDLYHYDLASFGNLLAKH---PMFSEGVNLSIARV------TSLESLDLRTWERGVGLTA 223
           D      +    +L+ K    P+     N+   RV      T +    +R  ERG G T 
Sbjct: 183 DAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETL 242

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNNHVFMTGEA 271
           +CG+  C    A+G + +    +S   + + GG L ++  D++ V +TG A
Sbjct: 243 SCGTGLC----ATGVVLRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAA 288


>gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010]
 gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010]
          Length = 299

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 79/200 (39%), Gaps = 37/200 (18%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL----- 106
           D   + F+   N DGS  + CGNG R +  F     + S    + F   T  G+      
Sbjct: 71  DGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKTLRPL 130

Query: 107 --VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFVVSMG 163
             VA   RD    VDMG     W+         + D D F +  P      R  F V MG
Sbjct: 131 GDVAPYGRD-VFRVDMGS----WR---------RGDLDAFTVTIPGTPGAARGTF-VDMG 175

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRT 214
           NPH +  +ED +         +L+ K    P+     N    RV  +++        +R 
Sbjct: 176 NPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMRV 235

Query: 215 WERGVGLTAACGSAACASVV 234
            ERG G T +CG+  CA+ +
Sbjct: 236 NERGCGETLSCGTGLCATAI 255


>gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
 gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
          Length = 237

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 36/215 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS    CGNG R   ++L  R  +K++ FTF +          R G I V +
Sbjct: 51  FMDYYNRDGSMATFCGNGARAFSQYLIDRGWVKQRKFTFLS----------RAGEIKVFL 100

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            + I  W  +P      +++ D +          R  FVV +G PH I  V+ ++   D+
Sbjct: 101 DDGI--WVRMPAVSEVKELEVDGY----------RGHFVV-VGVPHFILEVK-NVDEVDV 146

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGCL 239
              G LL +H       N+    V     L +RT+ERGV   T ACG+   A        
Sbjct: 147 EKLGRLL-RHKT---NANVDFYEVAQ-GFLKVRTYERGVERETKACGTGVTAVFFVH--- 198

Query: 240 HKTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKK 273
           H    +  +K+L  GG L    +N  +++ G+ ++
Sbjct: 199 HSRTGSKEMKVLVPGGTLFLREENGEIYLKGDVRR 233


>gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
 gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
          Length = 263

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 51/295 (17%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQD 57
           +S  + F K +G GN  ++ID R   +N  +  +  +S   +  F    D ++LI + +D
Sbjct: 5   KSMEITFYKYQGTGNDFVMIDDR--KENFDAGDLALVSKICDRKFGVGADGLILIRNHKD 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              D  +   N DGS+   CGNG RC V F        S   E I        ++   ++
Sbjct: 63  --YDFEMIYFNADGSQ-SMCGNGARCAVAF--------SAFLEII-------SDKTQFLA 104

Query: 118 VDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDL 175
           +D   E I+   L+ L             +G V  +  +   + V+ G+PH +  V   +
Sbjct: 105 IDGPHEAIIQDGLVQLL------------MGDVEKIEEKAEDYFVNTGSPHHVRMVSK-I 151

Query: 176 YHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACA 231
             Y +   G  +    M++  G N++     S E + +RT+ERGV    L+   G  ACA
Sbjct: 152 SDYPVFDEGKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACA 211

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
            V A     +    + +  LGG L + +          +++ G A++ + GK+ I
Sbjct: 212 LVYAK---DQDKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263


>gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 286

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 113/269 (42%), Gaps = 16/269 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G+GN  LV D       +T   +  +   +       +L     D    + + + N 
Sbjct: 7   KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGILEGPVLDGEQISMV-VWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEPIL 125
           DGS  Q  GNG+R   ++L     +++K FT  +  G   +   N +G+ +   MG+   
Sbjct: 66  DGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVSF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDLAS 182
               +P+       +  R  I     +F R P+ V   S+GNPH +  + D++    +  
Sbjct: 126 WSDDVPV-------EGPRREIINETMVFGRIPYPVTCLSIGNPHCVILM-DEISKDLVCR 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G        F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T
Sbjct: 178 IGRYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLT 237

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           +  + V+M GG L +E      V MTG+ 
Sbjct: 238 DPKMFVQMPGGTLELEIDGEGVVHMTGDV 266


>gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
 gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
          Length = 246

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGS+   CGN  R V  +  +   + R    F T  GI+ A    D          I+
Sbjct: 60  NSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGIIKAVVEND----------IV 109

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFG 184
           + +L       ++   D F    + HL       V  G PH +  V+D +LY+++L +  
Sbjct: 110 ETQLTKAKVINEEFSEDGF----IWHL-------VDTGVPHLVTIVDDLNLYNHELCA-- 156

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
                   +    N++ A++ + +++ +RT+ERGV G T ACG+   AS + +  L   N
Sbjct: 157 -----KMRYKYNANVNFAKIEN-KTIKVRTYERGVEGETLACGTGMAASFLRANSLKLVN 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
               V    G  L     +N ++  G  KK
Sbjct: 211 DTTFVYPKSGEELTLSIKDNTIYFKGAVKK 240


>gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
 gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
          Length = 281

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 45/292 (15%)

Query: 10  KMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIR 65
           KM+G GN  ++ID    R     +   A            D ++ + +   D+  D    
Sbjct: 13  KMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIWH 72

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS  + CGNG RC          R ++  E           R   +  D G P+ 
Sbjct: 73  FYNADGSRAEMCGNGSRCAA--------RLAYELEL--------AGRTHVLGTDAG-PVR 115

Query: 126 DWKLIPLARSFDKMDRDRFHI-GPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYD---- 179
                  A    + D  +  +  P++   L+    +S  G    +  V   + H      
Sbjct: 116 -------AEVLPETDEAKVQLTAPID---LKTSMTLSAAGRELTVHHVNTGVPHVVQVVD 165

Query: 180 ------LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
                 LA+    L  H  F+  G N++  +VT  +++ LRT+ERGV   T ACG+ A A
Sbjct: 166 DVDSVDLATIAPALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAA 225

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           +V  +  L     A +V   GG  L    +N ++++ G+A   ++G+L +++
Sbjct: 226 AVYIANQLGLCAPAATVTTSGGEHLTISQENGNLYLQGQAVLVYKGRLFLRS 277


>gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
 gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
          Length = 286

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 15/211 (7%)

Query: 68  NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG-ILVAKENRDGS-ISVDMGEP 123
           N DGS  +  GNG+R   ++L     +++K F   T  G + +   N +G+ +   MG+ 
Sbjct: 64  NPDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKV 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDL 180
                 +P+       +  R  I     +F R P+ V   S+GNPH +  + D++    +
Sbjct: 124 SFWSDDVPV-------EGPRREIINETMVFGRIPYPVTCLSIGNPHCVILM-DEISKDLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E +N  I +V     +    +ERG G T A GS  CA+  A+  L 
Sbjct: 176 CRIGRYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
            T+  + V+M GG + +E  ++  V +TG+ 
Sbjct: 236 LTDPKMLVQMPGGTMELEIEEDGTVLLTGDV 266


>gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
 gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
          Length = 304

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 54/317 (17%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQ----- 56
           + + F K  G  N  +++D      ++T + + AL TD  +    D ++ +   Q     
Sbjct: 2   TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRAL-TDRRSGVGADGVIRVMRAQLSEEV 60

Query: 57  ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                 D  V+ F+   N DGS    CGNG+R   RFL  R    +       G      
Sbjct: 61  RDLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTAL------GAAYPIA 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-----HLFLRNPFVVSM 162
            R G  ++     I DW  + +  +    D   R   H   V      H   R    VSM
Sbjct: 115 TRAGIRTI---RKIGDWYEVGMGPAQFLDDTAARTTGHDATVTIPMQPHEPARPGISVSM 171

Query: 163 GNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNL---------SIARVTSLESLD 211
           GNPH +  +   D L   DL     +    P+   G N+         + A  T +    
Sbjct: 172 GNPHTVVALPDHDTLAELDLTRSPGV---DPVPVHGTNVEFVVPDGVDTAADGTVVGRAS 228

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHK-----TNRAVSVKMLGGGLLIEWHDNNHVF 266
           +R +ERGVG T +CG+ ACA+  A   LH+     + R  ++ + GG + +     + V 
Sbjct: 229 MRVYERGVGETQSCGTGACAAAAA---LHRWAGESSPRTWTITVPGGRVQVTL-GTHEVL 284

Query: 267 MTGEAKKEWEGKLDIKT 283
           + G A+   +G + I +
Sbjct: 285 LAGPAELVADGHITITS 301


>gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
          Length = 353

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 117/299 (39%), Gaps = 63/299 (21%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI------------MLI 52
           ++ F K +G GN  ++ID R          +N    +D     Q+            +L+
Sbjct: 88  VIHFYKYQGTGNDFILIDNR----------LNTFPKEDTKLVAQLCERRFGVGGDGLILL 137

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            D  D   D  +   N DG+    CGNG RC+V F                  ++ KE  
Sbjct: 138 ED--DPEHDFSMIYYNSDGNPSSMCGNGGRCIVAFAQKLG-------------VIQKEET 182

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFV 171
             S    + + +    LI L        +D  HI  V   LFL      + G+PH +  V
Sbjct: 183 TFSAPDGLHKALFKNNLIHLQM------QDVSHIEKVKKGLFL------NTGSPHYVEVV 230

Query: 172 EDDLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
           + +L   D+   G  +    P   EGVN++           +RT+ERGV   T +CG+ A
Sbjct: 231 K-NLDSMDVKKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGA 289

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG-KLDIKTGKWI 287
            A+ +A     KT     +    GG         ++ +T E KKE+ G K+   T  W+
Sbjct: 290 TATAIAMYKGGKTKAEYIILETKGG---------NLEVTFEVKKEFLGLKIKEYTNVWL 339


>gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae]
          Length = 297

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 71/181 (39%), Gaps = 30/181 (16%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----EN 111
           A+ D F+   N DGS  Q CGNG R    ++ +        F   T  G    K    ++
Sbjct: 78  AATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVRSFDD 137

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               ++VDMG             S +        IG      L     V MGNPH    V
Sbjct: 138 SQAEVTVDMG-------------SAEVTGVSTCTIGSQQFAGLG----VDMGNPHLACVV 180

Query: 172 ----EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
               ++D+ + DL      L     F EGVN+ IA         +R +ERGVG T +CG+
Sbjct: 181 PGYGQEDIENLDLV---KPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGT 237

Query: 228 A 228
            
Sbjct: 238 G 238


>gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 292

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 46/245 (18%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKE 110
           +D   + F+   N DGS  + CGNG+R    FL           ++    T  G+   + 
Sbjct: 66  EDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTVPIGTRAGVRDVQR 125

Query: 111 NRDGSISVDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           +  G   VD+G     W L    PL R+ D                 R    + +GNPH 
Sbjct: 126 SGSG-FQVDLGR----WALAGGEPLVRAKDLQ-------------VARPGLGIDVGNPHV 167

Query: 168 IFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGV 219
           +  +  ED+L   DLA F   L   P  +EG N+ +        V  +  + +R  ERG 
Sbjct: 168 VVALSSEDELAEADLA-FAPQLDPEP--AEGANVELVVPADPLIVDGVGHITMRVHERGS 224

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS----VKMLGGGL---LIEWHDNNHVFMTGEAK 272
           G T +CG+ A A+ +A    H    A      V++ GG L   +    D  HV ++G A+
Sbjct: 225 GETLSCGTGAAAAALA--IRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAE 282

Query: 273 KEWEG 277
             ++G
Sbjct: 283 LVFDG 287


>gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 263

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 39/282 (13%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++F K +G GN  +++D R G      ++ I  L         D ++L+ +  D + D  
Sbjct: 1   MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DG E   CGNG RCVV F               R I V   N    I++D GE 
Sbjct: 59  MVYYNADGRESTMCGNGGRCVVAFA--------------REIGVMTGNSTRFIAID-GEH 103

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLAS 182
                      + D  ++    +  V  + +   +V +  G+PH + +V  D+   D+ +
Sbjct: 104 ---------HATIDAQNKVHLQMKDVQTIDVHPDYVFLDTGSPHHVQWVA-DVDKVDVKT 153

Query: 183 FGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA-SGC 238
            G  L    ++++  G N++    T+ +   +RT+ERGV   T +CG+   A  +A    
Sbjct: 154 EGAALRYGDLYADKGGSNINFVSPTA-DGFAVRTYERGVEDETYSCGTGVTAVAIALYHT 212

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWE 276
              T  AV++   GG L + +         V+++G A+K ++
Sbjct: 213 AQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFK 254


>gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 193

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 30/195 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +     S   N HF    D ++++   +  + 
Sbjct: 1   MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIIL---KYVAS 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRD 113
             F+   N DGS+   CGNG+RC   +L +   +    F  +T+ G L  +     E  D
Sbjct: 58  MPFMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117

Query: 114 GSISVDMGEPILDWK-LIPLARSFDKMDRDRFHIG----PVNHLFLRNPFVVSMGNPHAI 168
            S  V+MG+PI + K LI   +  ++  R++ +I      ++++F        MG  H++
Sbjct: 118 FSARVNMGKPIFNIKELINTEK--EQFLREKINIDGKEIEISYIF--------MGTDHSV 167

Query: 169 FFVEDDLYHYDLASF 183
            FV +D   YD+  F
Sbjct: 168 IFV-NDFSDYDIDEF 181


>gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
 gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
          Length = 257

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 38/281 (13%)

Query: 8   FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +  GN  ++ID R  G   N +S   N          D ++L+ +  D   D  + 
Sbjct: 5   FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG     CGNG RC+  F     K      +T R   VA +         + E  +
Sbjct: 63  YFNSDGRPGSMCGNGGRCITAF----AKFLGIVGDTCR--FVASDG--------LHEARI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + + L R  D        +G + H   +N   ++ G+PH +  V   L  YD+   G 
Sbjct: 109 SGESVSL-RMAD--------VGEIRHK--KNYSFLNTGSPHHVQEVSG-LEAYDVDREGK 156

Query: 186 LLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-T 242
            L ++ ++ E G N++   +     L +RT+ERGV   T +CG+   A+ +A     K  
Sbjct: 157 RL-RYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGKHP 215

Query: 243 NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
            +   ++  GG L + +  +      +++TG A+  ++G L
Sbjct: 216 EQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTL 256


>gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7]
          Length = 273

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125
           N DGS+   CGN  RCV  F     +  K+  F   +  +  +      I  ++G   IL
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 126 DWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           D  +IP  R   F   D    HI P  +L       +  G PH + FVE+  +   L + 
Sbjct: 120 D--VIPALRCEKFFSSDSVLEHI-PTFYL-------IDTGVPHLVGFVENKEWLNSLNAL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 170 ELRALRHAF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G  +
Sbjct: 227 PKKATLIPKSNESLELSLKNDEIFYKGAVR 256


>gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
 gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
          Length = 258

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 36/282 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M++F K +G GN  ++ID R       ++ + A   D         LI    D+  D  +
Sbjct: 1   MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLENDSQYDFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DG +   CGNG RCVV F      ++R++  F  I G   A    D  + + M +
Sbjct: 61  VYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETL-FIAIDGEHRATIEGDNYVHLQM-K 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   +  P                  +++FL      + G+PH + +V DD+   D+  
Sbjct: 119 NVTSVEEHP------------------DYVFL------NTGSPHHVQWV-DDVETVDVKP 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G ++    ++++    ++  V+  E+   +RT+ERGV   T +CG+   A  +A     
Sbjct: 154 EGAVIRYGTLYADKGGSNVNFVSKGENGFKVRTYERGVEDETYSCGTGVTAVAIALYHTK 213

Query: 241 KTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEG 277
           +T  + +++   GG L + +     +  +++++G A+  +EG
Sbjct: 214 QTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEG 255


>gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
          Length = 299

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 93/245 (37%), Gaps = 45/245 (18%)

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL 106
           I D      D F+   N DGS  + CGNG R +  F     +  +   K F   T  G+ 
Sbjct: 66  IADCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVK 125

Query: 107 VAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV 159
           V     D          V+MG     WK         + D D + +  P      R  F 
Sbjct: 126 VLTSLGDVPGLGKDVFQVEMGA----WK---------RGDVDGYEVTIPGTSGSARGTF- 171

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLD----- 211
           V MGNPH +  +ED           +L+ K    P      N+   R+      D     
Sbjct: 172 VDMGNPHVVAVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEA 231

Query: 212 -LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
            +R  ERG G T +CG+  CA+ +     +G  H T     + + GG L ++  D + V 
Sbjct: 232 TMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDVTDED-VK 285

Query: 267 MTGEA 271
           +TG A
Sbjct: 286 LTGSA 290


>gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
          Length = 299

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 100/258 (38%), Gaps = 50/258 (19%)

Query: 44  THFDQIMLIHDFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMK 93
           TH   +  ++D Q A     + D F+   N DGS  + CGNG R +  F     +  +  
Sbjct: 53  THPQAVSDLNDKQIAVCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPG 112

Query: 94  RKSFTFETIRGILVAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147
            + F   T  G+ V     D          V+MG     WK           D D + + 
Sbjct: 113 GEPFRLGTRAGVKVLTSLGDVPALGNDVFQVEMGS----WKC---------GDFDGYEVT 159

Query: 148 -PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIAR 203
            P      R  F V MGNPH +  +ED           +L+ K    P      N+   R
Sbjct: 160 IPGTAGSARGTF-VDMGNPHVVAVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVR 218

Query: 204 VTSLESLD------LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGG 253
           +      D      +R  ERG G T +CG+  CA+ +     +G  H T     + + GG
Sbjct: 219 IDEQSEGDNEGSATMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGG 273

Query: 254 GLLIEWHDNNHVFMTGEA 271
            L ++  D++ V +TG A
Sbjct: 274 TLRVDVTDDD-VKLTGSA 290


>gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 282

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 27/287 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDF-QD 57
           ++  V   K+ G GN  + ID R     + +    A +          D ++ + +  +D
Sbjct: 4   KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN-RDGS 115
              D      N DGS  + CGN  RC                F T  G++ A+ +   G 
Sbjct: 64  REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             V++  P    + + L    D  + RD  H              V+ G PHA+ F + D
Sbjct: 124 AKVELTPP----RDLTLGIELDLGEGRDMVHF-------------VNTGVPHAVVF-KRD 165

Query: 175 LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
               D+ + G  L +H  F+  G N + A+V    ++ LRT+ERGV   T ACG+ A A 
Sbjct: 166 ASTVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAG 225

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +  L      V+V+  GG +L    +   VF++G+A + + G++
Sbjct: 226 AFIAHALGLAESTVNVRSSGGEILGISIEGGSVFLSGKAVRVFSGEM 272


>gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens]
          Length = 61

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           K+ +F +G N++  +V     +++R WERG G T ACG+  CASV+A+  L   ++ V
Sbjct: 4   KYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61


>gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
 gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
          Length = 277

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 22/234 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDN-THFDQIMLIHDFQDASVDA 62
           + F KM G GN  +  D R    ++ +  +AI A+    N    D ++++   Q+ + D 
Sbjct: 1   MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQEEA-DV 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DG+    CGN   C            +       G  +     DG  ++ + +
Sbjct: 60  RVHYYNSDGTAADLCGNATLCSTAISAQWGITSASGMRLATGAGLINSRIDGLPAIAL-Q 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D              R    I P      R  F V+ G PH +   E D    D+A 
Sbjct: 119 PITDI-------------RPDMPIAPATAQGRRVGFAVA-GIPHLVILCE-DADAVDVAG 163

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
            G  L +H      G N++        S   RT+ERGV G T ACG+ A A+ V
Sbjct: 164 AGPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAV 217


>gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 39/287 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60
           +  + F K +G GN  ++ID R      +++A      D       D +ML+ D ++   
Sbjct: 2   TDQIKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQDTKN--F 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DG E   CGNG RC+V F              I G   A    DG     +
Sbjct: 60  DFEMVYYNADGREGSMCGNGGRCIVAFARDL---------NIIGEDAAFLAVDGPHQAQI 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +  ++ ++I +    D++ +D             + +V++ G+PH I  V D L + D+
Sbjct: 111 HDNQVNLQMIDV----DQISKDE------------SAYVLNTGSPHFIKIVSD-LKNMDV 153

Query: 181 ASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV---GLTAACGSAACASVVAS 236
              G  +  +  +  EG+N++           +RT+ERGV         G+ A A  +A 
Sbjct: 154 YQEGYTIRNNATYKKEGINVNFVEKEE-NGYFVRTFERGVEDETFACGTGATAAAMAIAI 212

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
               +    + +++LGG L I +  N H    V++ G A   +EG +
Sbjct: 213 EENMEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259


>gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 119

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M   +   +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+
Sbjct: 62  K--MRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAE 110


>gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
 gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
          Length = 246

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 35/211 (16%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  R V  +  +                      +G I+ +    +   
Sbjct: 60  NSDGSDASMCGNATRAVTHYAYT----------------------NGLINTNQARFLTGA 97

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVED-DLYHYDLASF 183
            +I      D ++        +N  F  + F+   V  G PH +  V+D +LY+++L + 
Sbjct: 98  GIIKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVDDLNLYNHELCA- 156

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                    +    N++ A++ + +++ +RT+ERGV G T ACG+   AS + +  L   
Sbjct: 157 ------KMRYKYNANVNFAKIEN-KTIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           N    V    G  L     +N ++  G  KK
Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKK 240


>gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
 gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
          Length = 299

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 93/245 (37%), Gaps = 45/245 (18%)

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGIL 106
           I D      D F+   N DGS  + CGNG R +  F     +  +   K F   T  G+ 
Sbjct: 66  IADCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVK 125

Query: 107 VAKENRDGS------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNPFV 159
           +     D          V+MG     WK         + D D + +  P      R  F 
Sbjct: 126 ILTSLGDVPGLGKDVFQVEMGA----WK---------RGDVDGYEVTIPGTSGSARGTF- 171

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLD----- 211
           V MGNPH +  +ED           +L+ K    P      N+   R+      D     
Sbjct: 172 VDMGNPHVVAVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEA 231

Query: 212 -LRTWERGVGLTAACGSAACASVVA----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
            +R  ERG G T +CG+  CA+ +     +G  H T     + + GG L ++  D + V 
Sbjct: 232 TMRVNERGCGETLSCGTGLCATAITLRAKTGIDHWT-----ITVRGGTLRVDVTDED-VK 285

Query: 267 MTGEA 271
           +TG A
Sbjct: 286 LTGSA 290


>gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 249

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   S 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPSM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
            F T  G++ AK N+D  + V +G      K+  +  +F+K+       G    L     
Sbjct: 91  IFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEKL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
                G PH + F +       L  F  +L +        N++  ++     L +RT+ER
Sbjct: 132 --CDTGVPHLVHFCQ------SLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +E
Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEMGFAYKNEELFFEGKVKYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 283

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SD-AINALSTDDNTHFDQIMLIHDFQD-ASVD 61
           V F KM+G GN  + ID R     +    D A        +   D ++ + +  D   VD
Sbjct: 9   VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKEN-RDGSISVD 119
                 N DGS  + CGN  RC       +          T  G + A+ +   G + V+
Sbjct: 69  YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P  +  L  + R  D+     F               V+ G PHA++ ++ D    D
Sbjct: 129 LTPP-KELSLNNVLRFGDETHEIHF---------------VNTGVPHAVW-LDADAAALD 171

Query: 180 LASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           + + G  L  H  F+  G N +   V    ++ LRT+ERGV   T ACG+ A A  V + 
Sbjct: 172 VRALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITH 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T   V+V+  GG LL    ++  VF+ G+A   + G++  ++
Sbjct: 232 ALGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPES 277


>gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 118/288 (40%), Gaps = 41/288 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASV 60
           +  + F K +G GN  ++ID R       ++A      D       D +ML+ D +  + 
Sbjct: 2   TDQIKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQDTK--NF 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG E   CGNG RC+V F     + R+   F  +          DG     
Sbjct: 60  DFEMVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAV----------DGPHQAQ 109

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +  ++ ++I +    D++ +D               +V++ G+PH I  V  DL + D
Sbjct: 110 IHDNQVNLQMIDV----DQITKD------------ETAYVLNTGSPHFIKIVS-DLKNMD 152

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +   G  +  +  + +EG+N++           +RT+ERGV            +   +  
Sbjct: 153 VYKEGYTIRNNATYKNEGINVNFVEKEE-NGYFVRTFERGVEDETLACGTGATAAAMAMS 211

Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           + +       + +++LGG L I +         V++ G AK  +EG +
Sbjct: 212 IEENMEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259


>gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
 gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
          Length = 273

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +      D +   R      N+  L N P  ++++ G PH + FV++  +   L + 
Sbjct: 110 ESNLGNYEILDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLNTL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 170 ELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G A+
Sbjct: 227 PKKATLIPKSNEFLELSLKNDEIFYKGVAR 256


>gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99]
 gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
          Length = 273

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNIV 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  ++++ G PH + FV++      L + 
Sbjct: 110 ESNLGNYQILDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLNTL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T
Sbjct: 170 ELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFHNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G A+
Sbjct: 227 PKKATLIPKSNEFLELSLKNDGIFYKGVAR 256


>gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327]
          Length = 249

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F+    K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
           +F T  G++ AK N+D  + V +G      K+  +  +F+++       G    L     
Sbjct: 91  SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
              + G PH + F +      +L  F  +L +        N++  ++     L +RT+ER
Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +E
Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa]
          Length = 108

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA      
Sbjct: 8   SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 67

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 68  LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108


>gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 253

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 87/224 (38%), Gaps = 25/224 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K E  GN  +V++    H     D     S       D +++     D++V   +R
Sbjct: 1   MQFWKFEAEGNSYIVVESSNLH---AVDIPAICSKRTGLSGDGLLVAEWLTDSTVH--MR 55

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DG+E   CGNG RCV  F  + + R     + I    V K           GE  +
Sbjct: 56  VFNADGTEAPMCGNGARCVAAF--AYVNRPQLRDQDI----VIKAQGATVTHRLAGEEGM 109

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            +       +  + +RD      +N     + +   +G+PH +     DL   +L   G 
Sbjct: 110 KFN------ATIRFERDPL----INKYGEESRYQYVVGSPHLVILT--DLEAVNLTHEGP 157

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +      F  G N+  A V     + +  WERGVG+   C + +
Sbjct: 158 IY--EATFDGGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGS 199


>gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205]
 gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205]
          Length = 278

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 53/239 (22%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS---FTFETIRGILVAKENRDGSISV 118
           F+   N DGS  + CGNG R  VR+L  S +   S       T  G++ A+   +G ++V
Sbjct: 67  FMDYWNSDGSAAEMCGNGARVFVRYLLESGLAAPSGAVLPVATRAGVVRARVEGEG-VAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +M  P L                    +  +  L L     V +GNPH +  V   L   
Sbjct: 126 EMRRPRLAGA----------------SVAGLGGLALPG-TAVDVGNPHLVCPVPAGLELS 168

Query: 179 DLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLD-------LRTWERGVGLTAACG 226
            L      L + P     +F  GVN+    VT  + +D       +R +ERG   T +CG
Sbjct: 169 ALD-----LTRAPEFDPVVFPAGVNVEF--VTVGDPVDGADGHVRMRVYERGSAETHSCG 221

Query: 227 SAACASVVASGCLHKTNR---AVSVKMLGGGLLIE------WHDNNHVFM-TGEAKKEW 275
           + ACA  VA+  L    R    V+V + GG L++       W     V + TGE  + W
Sbjct: 222 TGACA--VAAVALRDGGRDTGVVAVDVPGGRLVVTLTTQSCWLSGPAVLVATGEVSRGW 278


>gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
 gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
          Length = 308

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 72/181 (39%), Gaps = 30/181 (16%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D F+   N DG  V+ CGNG R    FL +     R  +   T  G     L++ +    
Sbjct: 87  DWFMDYRNADGGVVEMCGNGARVFAHFLRALGLEPRGDYAIGTRAGAKRVRLLSFDGGGA 146

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SV+MG   L     P A S     R  F           +     +GNPH +   +  
Sbjct: 147 EVSVEMGRVRLGG---PSATSVAGAPRGCF-----------SGTSADVGNPHLVCLAQ-- 190

Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
               DL     L L + P     +F EGVN+      S +   LR  ERGVG T ACG+ 
Sbjct: 191 --GLDLDGLAALDLTRQPDYDKAVFPEGVNIEFVVPHSPDKATLRVHERGVGETKACGTG 248

Query: 229 A 229
           +
Sbjct: 249 S 249


>gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 249

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 95/245 (38%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
           +F T  GI+ AK N+D  + V +G      K+  +  +F+++       G    L     
Sbjct: 91  SFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
              + G PH + F +      +L  F  +L +        N++  ++     L +RT+ER
Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +E
Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 382

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 99/272 (36%), Gaps = 51/272 (18%)

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-- 109
           I   Q+   +   R+    G E   CGNG+ C+  +L  +    S +  T   +   K  
Sbjct: 73  IQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTEIPLATPKVI 132

Query: 110 -----ENRDGSISVDMGEP--------------ILDWKLIPLARSFDKMDRDRFHIGPVN 150
                +NR GS  V++G P              ++D  +  +     K   D       +
Sbjct: 133 KIGTDQNRVGSW-VNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRADDLKAYTTD 191

Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA---------------SFGNLLAKH----- 190
           +       +V  G PH + F + D    + A               SFG+ L +H     
Sbjct: 192 NELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSWLVEHIGNYM 251

Query: 191 -----PMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAACGSAACASVVASGCLHKTNR 244
                 +F  G+N++ AR  +   ++ R +ERG+   T ACG+ A A       +HK N 
Sbjct: 252 NNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIYSQMHKLNI 311

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +  V +L       WHD        +    W+
Sbjct: 312 S-EVDVLPHRCC--WHDKKAKICIKQNSDGWQ 340


>gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
 gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
          Length = 341

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 101/267 (37%), Gaps = 57/267 (21%)

Query: 52  IHDFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104
           +H F +A  +A  F+   N DGS  Q CGN +R +   L            S T  T  G
Sbjct: 78  VHRFHEAVPEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGG 137

Query: 105 ILVAKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVV 160
                  R G + +VDMG      +LI    +  ++D + +    V    L  P     +
Sbjct: 138 ARTL--TRAGQLWTVDMGPA----RLIRPEHALGEVDDEGWDTA-VTVPGLEGPRAALSI 190

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLL-----AKHPMFSEGVNLSIARVTSLES------ 209
           +M NPH +  + ++    D A F  L         P+  +G NL +      ES      
Sbjct: 191 AMPNPHTVVALSEE-AELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAE 249

Query: 210 --------------LDLRTWERGVGLTAACGSAACASVVASGCLHK-----TNRAVSVKM 250
                           +R  ERGVG T +CG+  CA  VA   LH+           + +
Sbjct: 250 STGQDAEASVRVGRARMRVLERGVGETRSCGTGCCAVAVA---LHEWEGEDAPTDYLIDV 306

Query: 251 LGGGLLI-----EWHDNNHVFMTGEAK 272
           LGG + +      W  +  V +TG A 
Sbjct: 307 LGGQVGVHVGADPWAPDATVLLTGPAT 333


>gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 249

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
           +F T  G++ AK N+D  + V +G      K+  +  +F+++       G    L     
Sbjct: 91  SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
              + G PH + F +      +L  F  +L +        N++  ++     L +RT+ER
Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +E
Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908]
 gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018]
 gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017]
          Length = 273

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +      D +   R      N   L N P  ++++ G PH + FV++      L S 
Sbjct: 110 ESNLGNYEILDTIPNLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVKNKGL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G A+
Sbjct: 227 PKKATLIPKSNEFLELSLKNDEIFYKGVAR 256


>gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 255

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 25/178 (14%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMK-RKSFTFETIRGILVAKENRD-- 113
           A  D ++   N DGS  Q CGNG+R    +L  S M+ R  F   +  G      +R   
Sbjct: 29  APGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGMEGRDEFVVASAAGPRPVTVHRADA 88

Query: 114 --GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--- 168
               I+VDMG+        P   +F+     R   G            V +GNPH     
Sbjct: 89  TRADITVDMGKANTLGSGGP---AFEATVGGRRFAG----------LGVDVGNPHLACVD 135

Query: 169 -FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
                DDL   D+A+   +   H  F EGVN+ +    +  ++ +R  ERGVG T +C
Sbjct: 136 PALTADDLAGLDVAA--PVSFDHAQFPEGVNIEVLTAPADGAVRMRVHERGVGETRSC 191


>gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702]
          Length = 292

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 94/253 (37%), Gaps = 56/253 (22%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDAS 59
           S ++F K  G GN  +++   G   ++T + +  L+            +I       DA 
Sbjct: 2   SALEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAG 61

Query: 60  V-----------DAFIRIINCDGSEVQSCGNGMRCVVRFL-------------TSRMKRK 95
           V           D F+   N DGS  + CGNG+R     L              +R  R+
Sbjct: 62  VIDEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRR 121

Query: 96  SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR 155
             T   + G           +SVDMG P++      L  S   +  + +H   V+     
Sbjct: 122 ELTVHAVAGTTA-------DVSVDMGAPVV------LGESSATLAGETYHGTGVD----- 163

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHP-MFSEGVNLSIARVTSLESLDL 212
                 MGNPH +  V   L    LA+   G L    P  F  GVNL +        + +
Sbjct: 164 ------MGNPH-LACVVPGLSPEKLATLPVGLLPEWDPAFFPAGVNLELVTAPVDGVVHM 216

Query: 213 RTWERGVGLTAAC 225
           R  ERGVG T +C
Sbjct: 217 RVHERGVGETLSC 229


>gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
          Length = 283

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 77/186 (41%), Gaps = 46/186 (24%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILVAKENRDGSI- 116
           F+   N DGS  + CGNG+R    +L +   +    FT  T    R + V   +RD ++ 
Sbjct: 71  FMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSADRDDAVV 130

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVED 173
            VDMG         P A +           G    +    PF    V +GNPH    V  
Sbjct: 131 RVDMG---------PAAVT-----------GISTCMIADQPFAGMGVDLGNPHLACVVPG 170

Query: 174 DLYHYDLASFGNLLAKHPMF-----SEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
                  A+  N+  + P+F       GVN+ +  VT L       ++ +R WERGVG T
Sbjct: 171 ----LTPAALKNIALEAPVFDTAFFPRGVNVEL--VTELADGLDDPAIHMRVWERGVGET 224

Query: 223 AACGSA 228
            +CG+ 
Sbjct: 225 RSCGTG 230


>gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 249

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 33/235 (14%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILV 107
           ++L H+  D   + +    N DGS    CGNG R    F     K   + +F T  GI+ 
Sbjct: 45  VILPHEKYDFEWEFY----NNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIK 100

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           AK N+D  + V +G      K+  +  +F+++       G    L          G PH 
Sbjct: 101 AKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL-------CDTGVPHL 139

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACG 226
           + F +      +L  F  +L +        N++  ++     L +RT+ERGV   T ACG
Sbjct: 140 VHFCQ------NLDEFNTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACG 193

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +   A    +    K    V +    G  +   + N  +F  G+ K  +E   + 
Sbjct: 194 TGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248


>gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
 gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
          Length = 276

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111
           A  D F+   N DGS  + CGNG R    ++ SR  +  +SF   T  G     + + + 
Sbjct: 63  APADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSFDE 122

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            D  +SV+MG   +         S   M  + F               V MGNPH +  V
Sbjct: 123 HDAQVSVEMGPAEV------TGVSTASMVGENF-----------AGLGVDMGNPH-LAAV 164

Query: 172 EDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              L    LA  +F      H  F  GVN+ +       ++ +R +ERGVG T +CG+  
Sbjct: 165 IPGLTPESLADMAFAQPEFDHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGTGT 224

Query: 230 CASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            A+  A+          V V + GG + +E  D     +TG ++   EG
Sbjct: 225 VAAARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEG 272


>gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
 gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
          Length = 264

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 131/304 (43%), Gaps = 64/304 (21%)

Query: 5   MVDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIM 50
           M+ F K +G GN  ++ID R               CH      A   +  +++  +D  M
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLENDPQYDFRM 60

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           + +              N DG E   CGNG RCVV F     KR          I +  E
Sbjct: 61  VYY--------------NSDGRESTMCGNGGRCVVAF----AKRLGIIEHETLFIAIDGE 102

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +R    +   G+  +  ++    ++  +++  +       ++FL      + G+PH + +
Sbjct: 103 HR----ATIEGDSYVRLQM----KNVTEVEEHK------GYVFL------NTGSPHHVQW 142

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSA 228
           VE ++   D+ S G  +    +++     ++  V+  E    +RT+ERGV   T +CG+ 
Sbjct: 143 VE-EVDTVDVKSEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTG 201

Query: 229 ACASVVASGCLHKTN-RAVSVKMLGGGLLI------EWHDNNHVFMTGEAKKEWEGKLDI 281
             A  +A   + +T+ + +++   GG L +      E ++N  ++++G A+  +EG ++ 
Sbjct: 202 VTAVAIALYHIGETDAQQITLHTRGGDLQVAFDRVGEGYEN--IYLSGSAQFVFEGTIEE 259

Query: 282 KTGK 285
             GK
Sbjct: 260 LKGK 263


>gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
 gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
          Length = 330

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 19/200 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           L+ D  DA+   F+   N DGS  + CGNG+R V  F        +   E + G      
Sbjct: 79  LLADVPDATW--FMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLGTRAGVR 136

Query: 111 NRDGSISVDMGEPILDWKLIPLARSF----DKMDRDRF--HIGPVNHLFLRNPFVVSMGN 164
                   D G P   W  + + R +    +   RD F   +       +R    V +GN
Sbjct: 137 RVRRVPVPD-GLPDAVWYAVDMGRWYLPGGEDAVRDGFDAQVAVAGLADVRPALGVDVGN 195

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---------LESLDLRTW 215
           PH +  +       D A         P+   G N+ +              +  + +R  
Sbjct: 196 PHTVLALPGP-EELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVH 254

Query: 216 ERGVGLTAACGSAACASVVA 235
           ERGVG T +CG+ ACA+ +A
Sbjct: 255 ERGVGETRSCGTGACAAALA 274


>gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 249

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 43/246 (17%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRN 156
           +F T  G++ AK N+D  + V +G      K+  +  +F+++ +  +F            
Sbjct: 91  SFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNTFEELGKTWQF------------ 131

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
                 G PH + F +      +L  F  +L +        N++  ++     L +RT+E
Sbjct: 132 ---CDTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYE 182

Query: 217 RGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           RGV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +
Sbjct: 183 RGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFTYKNEELFFEGKVKYCF 242

Query: 276 EGKLDI 281
           E   + 
Sbjct: 243 EANYNF 248


>gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
 gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
          Length = 277

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 25/229 (10%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
            D+  + F+   N DGS  + CGNG+R   R+L          F   T  G    + + D
Sbjct: 62  SDSEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDD 121

Query: 114 GSISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            S++V MG   +    + +   R    +  D           + NP +VS+ +       
Sbjct: 122 LSVTVHMGAATITGTSVAVVGGRELSGVAVD-----------VGNPHLVSVLDDDVDELD 170

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             D   YD            +F EGVNL    V   E L +R +ERGVG T ACG+   A
Sbjct: 171 LRDAPRYDTE----------VFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVA 220

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +V A+  L   +   S   + GG +          +TG A+   +G+LD
Sbjct: 221 AVAAALHLRGVDTGESTVDIPGGRVSVTVGKGVSTLTGPAEFVAKGELD 269


>gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3]
          Length = 249

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 29/219 (13%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G  
Sbjct: 57  EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG-- 113

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K+  +  +F+++       G    L          G PH + F +      +L  F
Sbjct: 114 ----KIKSVQNTFEEL-------GKTWQL-------CDTGVPHLVHFCQ------NLDEF 149

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K 
Sbjct: 150 DTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V +    G  +   + N  +F  G+ K  +E   + 
Sbjct: 210 QNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248


>gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 249

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 29/219 (13%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G  
Sbjct: 57  EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG-- 113

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K+  +  +F+++       G    L          G PH + F +      +L  F
Sbjct: 114 ----KIKSVQNTFEEL-------GKTWQL-------CDTGVPHLVHFCQ------NLDEF 149

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K 
Sbjct: 150 DTILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V +    G  +   + N  +F  G+ K  +E   + 
Sbjct: 210 QNKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYNF 248


>gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens
           YS-314]
          Length = 313

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 49/196 (25%)

Query: 56  QDASVDA---FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFET---IRGILV 107
           Q   VD    F+   N DGS  + CGNG+R    +L +   +    FT  T    R + V
Sbjct: 91  QTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTV 150

Query: 108 AKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMG 163
              +RD ++  VDMG         P A +           G    +    PF    V +G
Sbjct: 151 LSADRDDAVVRVDMG---------PAAVT-----------GISTCMIADQPFAGMGVDLG 190

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMF-----SEGVNLSIARVTSL------ESLDL 212
           NPH    V         A+  N+  + P+F       GVN+ +  VT L       ++ +
Sbjct: 191 NPHLACVVPG----LTPAALKNIALEAPVFDTAFFPRGVNVEL--VTELADGLDDPAIHM 244

Query: 213 RTWERGVGLTAACGSA 228
           R WERGVG T +CG+ 
Sbjct: 245 RVWERGVGETRSCGTG 260


>gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
 gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
          Length = 287

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 91/214 (42%), Gaps = 34/214 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+   N DGS  + CGNG R  VRFL       S     I G+L     R G +      
Sbjct: 75  FMDYWNSDGSFAEMCGNGARVFVRFLL-----DSGLATPIHGVLPVA-TRAGLVRAR--- 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNP-FVVSMGNPHAIFFVEDDLYHYDL 180
             LD + I +     +M R R +      L  L  P   V +GNPH +  +   L    L
Sbjct: 126 --LDGEDIAV-----EMRRPRLYATSTAALGALTLPGTAVDVGNPHLVCPLPAGLELTGL 178

Query: 181 ASFGNLLAKHP-----MFSEGVNLSI-ARVTSLESLD----LRTWERGVGLTAACGSAAC 230
                 L + P     +F  GVN+   A    L+ +D    +R +ERG   T +CG+ AC
Sbjct: 179 D-----LTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGTGAC 233

Query: 231 A-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           A + VA   + +    ++V + GG L +   DN+
Sbjct: 234 AVAAVALRDIARETGTIAVDVPGGRLTVTLTDNS 267


>gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
 gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
          Length = 257

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 39/197 (19%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           + +D   +  N DGSE   CGNG R C      + + +    F T  GI+ A  + D  +
Sbjct: 59  SKIDFEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVL 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           S      I+D +++   +S+                     +++  G PH ++F + D+ 
Sbjct: 119 SELTPPKIIDKEILENGKSW---------------------WLLDTGVPHLVYFTK-DIT 156

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            +D+A    L  K+       N++IA +   ++L +RT+ERGV   T ACG+   A    
Sbjct: 157 KFDIAEARELRDKY-----NANVNIAFIEG-KNLRVRTYERGVEDETLACGTGMAA---- 206

Query: 236 SGCLHKTNRAVSVKMLG 252
             C +   RA S K++G
Sbjct: 207 --CFY---RAYSEKVVG 218


>gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
 gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
          Length = 321

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGIL-VAKENRDG 114
           F+   N DGS  Q CGNG+R   R+              +  T   +R ++  A E  DG
Sbjct: 85  FMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEVGDG 144

Query: 115 S-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-- 171
              +V MG   L      LA   D       H+G       R    V +GNPH +  +  
Sbjct: 145 PWFTVGMGVVTLVGGDDALASGGDA----EVHVG--GLAVTRPGLSVDVGNPHTVVVLAQ 198

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSI---------ARVTSLESLDLRTWERGVGLT 222
           E DL   DL S   +    P+ ++G N+ +         A  T++  + +R  ERGVG T
Sbjct: 199 EGDLEQADLTSAPVV---RPVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGVGET 255

Query: 223 AACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +CG+ A A+  A              V + GG + +  H +    + G A    E ++D
Sbjct: 256 RSCGTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEARVD 315

Query: 281 I 281
           +
Sbjct: 316 L 316


>gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
 gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
          Length = 273

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  ++++ G PH + FV++  +   L + 
Sbjct: 110 ESNLGNYQILDTIPALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLNTP 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T
Sbjct: 170 ELRALRHEF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G A+
Sbjct: 227 PKKATLIPKSNESLELSLKNDGIFYKGVAR 256


>gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
 gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
          Length = 291

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 109/302 (36%), Gaps = 44/302 (14%)

Query: 3   SSMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           SS + FAK  G  N  +V+ D  G  D   +              D ++ +  +  A  D
Sbjct: 2   SSGIRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAGPD 61

Query: 62  A---------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI-- 105
                     F+   N DGS  + CGNG+R   R+L                 T  G+  
Sbjct: 62  VPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEALLPDGPGAELALGTRGGVRT 121

Query: 106 --LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMD---RDRFHIGPVNHLFLRNPFVV 160
                 +  DG +SV MG          +AR  D+     R   + G            V
Sbjct: 122 VRFAGGDGADGEVSVGMG----------VARVGDESTATVRGHAYAG----------VAV 161

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV 219
            +GNPH       D         G      P +F  GVN+      S + + +R  ERGV
Sbjct: 162 DVGNPHLACVTAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGV 221

Query: 220 GLTAACGSAACASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+VVA+      +R  V V   GG L +    +    + G A     G+
Sbjct: 222 GETRSCGTGTVAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGE 281

Query: 279 LD 280
           +D
Sbjct: 282 ID 283


>gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH]
 gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH]
          Length = 242

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 36/210 (17%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +  N DGSE + CGNG R    +   + +  K   F TI G++ A+   DG I   +   
Sbjct: 57  QFYNADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAE--VDGDI---VESQ 111

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           + + K+I     +   D                      G PH    V+ D    D+ SF
Sbjct: 112 LTEHKIIKEVGEWKLFD---------------------TGVPH---LVKID----DINSF 143

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
               A+   +    N+++A V    +L +RT+ERGV   T ACG+  CAS + +      
Sbjct: 144 NIEEARKLRYEHNANVNVAEVKD-GNLYVRTYERGVEDETLACGTGMCASFLFAREQGLV 202

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
              V+V    G  L     NN ++  G+ K
Sbjct: 203 GNEVTVYPKSGEELHIKLKNNRLYFKGKVK 232


>gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 231

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 25/178 (14%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENR 112
           A+ D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G   + V   + 
Sbjct: 5   AAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADA 64

Query: 113 DGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFF 170
            G+ +SVDMG+      L    ++F+     R   G            V +GNPH A   
Sbjct: 65  TGADVSVDMGKAN---TLGSGGKAFEATVGGRRFAG----------LAVDVGNPHLACLD 111

Query: 171 VE---DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            E   D+L   D+A+  +  A    F +GVN+ +    +   + +R  ERGVG T +C
Sbjct: 112 PELSVDELAALDVAAPVSFDAAQ--FPDGVNVEVLTAPAAGVVHMRVHERGVGETRSC 167


>gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4]
 gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4]
          Length = 319

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 70/182 (38%), Gaps = 33/182 (18%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKENR 112
             D F+   N DGS  + CGNG+R     L  T R    +    T  G     +V++   
Sbjct: 91  PADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGPRPATIVSRSGD 150

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D  + VDMGEP L      L  S  ++    F               V MGNPH    V 
Sbjct: 151 DAVVRVDMGEPRL------LGLSSAELGGRTF-----------AGVAVDMGNPHLACVVP 193

Query: 173 DDLYHYDLASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
                 D A+   L    P       F  GVN+ IA   +   + +R  ERG G T +CG
Sbjct: 194 G----LDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGAGETMSCG 249

Query: 227 SA 228
           + 
Sbjct: 250 TG 251


>gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 292

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 56/247 (22%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKR----KSFTFETIRGILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  VR+L  SR+ +     +    T  G+   +    G   
Sbjct: 73  FMDYYNADGSAAEMCGNGIRVYVRYLIESRLVQLADGDTLPIGTRSGVRDVQRTLSG-FQ 131

Query: 118 VDMGEPILDWKLI---PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           VD+G     W+L    PL R+ +          PV  L L     + +GNPH +  + D+
Sbjct: 132 VDLGR----WRLAGGEPLVRAKEL---------PVARLGLG----IDLGNPHVVVALADE 174

Query: 175 ----------LYHYDLASFGN-----LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
                     + H + A  G      ++   P+  +GV            + +R  ERG 
Sbjct: 175 SELESADLTYIPHLEPAPQGGANVEFVVPHEPLVKDGVG----------RIRMRVHERGS 224

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGL---LIEWHDNNHVFMTGEAKKE 274
           G T +CG+ A A+ +A       N      V + GG +   +    D  HV ++G A+  
Sbjct: 225 GETLSCGTGAAAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPAELV 284

Query: 275 WEGKLDI 281
           + G L++
Sbjct: 285 YTGALEL 291


>gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24]
          Length = 272

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVF------LAGKR----EISIRIEEPNIV 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  ++++ G PH + FV++      L S 
Sbjct: 110 ESNLGNYQILDTIPNLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVKNKGL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  + +   H T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFHNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G A+
Sbjct: 227 PKKATLIPKSNESLELSLKNDEIFYKGVAR 256


>gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
 gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
          Length = 289

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G    +L A      
Sbjct: 71  DWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPVVLNALAGVGA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V+MG      K   L      +   +F           N   V +GNPH +  V+  
Sbjct: 131 DVTVEMG------KANQLGVGAATVGGRQF-----------NGLAVDVGNPH-LACVDAA 172

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +   +LA+      ++     F +GVN+ +       ++ +R  ERGVG T +CG+   A
Sbjct: 173 MSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGETRSCGTGTVA 232

Query: 232 SVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNN 263
           + VA+   H+ ++  +++V++ GG +++   D N
Sbjct: 233 AAVAA-LAHQGSQTGSLTVRIPGGEVVVTITDAN 265


>gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16]
          Length = 273

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52]
          Length = 273

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  +++  G PH + FVE+      L S 
Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVENK---EGLNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   +  
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNM 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKATL 232


>gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
 gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
          Length = 264

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 131/304 (43%), Gaps = 64/304 (21%)

Query: 5   MVDFAKMEGIGNKILVIDMRG--------------CHDNITSDAINALSTDDNTHFDQIM 50
           M+ F K +G GN  ++ID R               CH      A   +  +D+  +D  M
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEDDPQYDFRM 60

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           + +              N DG E   CGNG RCVV F     K+          I V  E
Sbjct: 61  VYY--------------NSDGRESTMCGNGGRCVVAF----AKQLGIIEHETLFIAVDGE 102

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +R    +   G+  +  ++    ++  +++  +       ++FL      + G+PH + +
Sbjct: 103 HR----ATIEGDSYVRLQM----KNVTEVEEHK------GYVFL------NTGSPHHVQW 142

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGV-GLTAACGSA 228
           VE ++   D+ S G  +    +++     ++  V+  E    +RT+ERGV   T +CG+ 
Sbjct: 143 VE-EVDAVDVKSEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTG 201

Query: 229 ACASVVASGCLHKTN-RAVSVKMLGGGLLI------EWHDNNHVFMTGEAKKEWEGKLDI 281
             A  +A   + +T+ + +++   GG L +      E ++N  ++++G A+  ++G ++ 
Sbjct: 202 VTAVAIALYHIGETDAQQITLHTRGGDLQVAFDRVGEGYEN--IYLSGSAQFVFDGTIEE 259

Query: 282 KTGK 285
             GK
Sbjct: 260 LKGK 263


>gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231]
 gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002]
 gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19]
          Length = 297

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 92/234 (39%), Gaps = 33/234 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDG 114
           D F+   N DGS  + CGNG R    +L SR  +    F+  T  G       A    D 
Sbjct: 81  DYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTVSVHAFSATDA 140

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-- 172
            +SVDMG               +        IG  ++  +     V MGNPH    V   
Sbjct: 141 DVSVDMGP-------------AEVTGVSTCRIGTASYAGMG----VDMGNPHLACVVPGL 183

Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGVGLTAACGSAA 229
               L   DL      +     F EGVN+ +   +     + +R +ERGVG T +CG+  
Sbjct: 184 TPQALAEVDLV---QPVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGVGETRSCGTGT 240

Query: 230 CASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            A+  ++       +  V V + GG + +    +  V + G +K    G+LD +
Sbjct: 241 VAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQLDTR 293


>gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d]
          Length = 273

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +  ++       L     N+ +F  G  +
Sbjct: 227 PKKAALIPKSNESLELSLKNDEIFYKGAVR 256


>gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 298

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 42/227 (18%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRC-----VVRFLTSRMKRK------SFTFETIRG----I 105
           D F+   N DGS  + CGNG R      V + L S   R       SFT  T  G     
Sbjct: 79  DWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKGISFTVGTRAGAKPVT 138

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           + A ++R   +SV+MG P +      +  S  +M             F      V MGNP
Sbjct: 139 VHACDSRRADVSVEMGVPEV------MGLSTAQMAG-----------FFYAGLGVDMGNP 181

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPM-----FSEGVNLSIARVTSLESLDLRTWERGVG 220
           H    +   +   D  +   L+ + P+     F  G+N+ +        +++R +ERGVG
Sbjct: 182 H----LAATIPGLDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDGEVNMRVFERGVG 237

Query: 221 LTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF 266
            T +CG+   A+ V++         +V+V + GG + +E  ++    
Sbjct: 238 ETRSCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGSTL 284


>gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
 gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
          Length = 251

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 21/191 (10%)

Query: 72  SEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           S   +CGNG+R +  F   + K  S   F      +++ +N+  +I      P    K+I
Sbjct: 64  SRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIPNFFKKII 123

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                     R  F+       FL++ FV  + N H I  +++ +  Y L  F N +  +
Sbjct: 124 L---------RIEFY-------FLKSGFV-ELNNLHFITIIKN-IKTYYLFFFYNKI--N 163

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F+  VN+   ++       +R +E+GVG T +CG+   +S      ++K     +V  
Sbjct: 164 FFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKINLFNVYS 223

Query: 251 LGGGLLIEWHD 261
           LGG   I + D
Sbjct: 224 LGGFSKISFFD 234


>gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1]
          Length = 290

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 72/181 (39%), Gaps = 37/181 (20%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117
            V+ F+   N DGS  + CGNG+R   R+L  R          T  G+  A  + D ++S
Sbjct: 70  GVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTATLSGD-TVS 128

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVED 173
           VDMG         P+A            IGP +             + +GNPH       
Sbjct: 129 VDMG---------PVA------------IGPASVATTGGARFDGIALDVGNPHLACVTAT 167

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGLTAACGS 227
           D    DL   G       +F  GVN+    VT L+       + +R  ERGVG T ACG+
Sbjct: 168 DPDALDLT--GAPAVDPEVFPRGVNVEF--VTPLDGPADGGRVRMRVHERGVGETLACGT 223

Query: 228 A 228
            
Sbjct: 224 G 224


>gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 283

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 51/245 (20%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGI---LVA 108
           Q    + F+   N DGS  + CGNG R  VR+L     +  +  + +  T  G+   LVA
Sbjct: 60  QAGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETGLAVPEGAALSVATRAGVVRALVA 119

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
            E    +ISV++  P +       A S   +            L L     V +GNPH +
Sbjct: 120 GE----AISVEVRRPRV------YATSTAAL----------GGLTLAG-SAVDVGNPHLV 158

Query: 169 FFVEDDLYHYDLASFGNL-LAKHP-----MFSEGVNLSI-ARVTSLESLD----LRTWER 217
             +   L        G L L + P     +F  GVN+   A    ++  D    +R +ER
Sbjct: 159 CALPAGL------ELGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYER 212

Query: 218 GVGLTAACGSAACASVVASGCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           G   T +CG+ ACA  VA+  LH   R    V+V + GG L +   D++  ++ G A   
Sbjct: 213 GSAETLSCGTGACA--VAAVALHDAGRNTGTVAVDLPGGRLTVTMTDDS-CWLAGPALLV 269

Query: 275 WEGKL 279
             G L
Sbjct: 270 ASGTL 274


>gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30]
          Length = 273

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  + +  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKATL 232


>gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
          Length = 249

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 92/245 (37%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAPMCGNGSRAAAHFAHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
           +F T   I+ A  N D  + V +G      K+  +  +F+++       G    L     
Sbjct: 91  SFLTGAKIIKANVNHD-RVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
                G PH + F E+      L  F  +L +        N++  ++    SL +RT+ER
Sbjct: 132 --CDTGVPHLVHFCEN------LDEFDTILCQKMRQKYNANVNFVKILDKNSLKVRTYER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K    V +    G  +   + N  +F  G+ K  +E
Sbjct: 184 GVEDETLACGTGMGACFYLAFLNKKVQNEVKITPKSGEEVRFKYKNEELFFEGKVKYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75]
          Length = 273

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 22/188 (11%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124
           N DGS+   CGN  RCV  F        ++       R I +  E  +  I  ++G   I
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPN-IIESNLGNYKI 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           LD  +IP  R       ++F     N   L N    +++  G PH + FV++  +   L 
Sbjct: 119 LD--IIPALRC------EKFF---TNDSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   +
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFY 224

Query: 241 KTNRAVSV 248
            T +  ++
Sbjct: 225 NTPKKATL 232


>gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464]
          Length = 273

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  VA+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYST 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
               ++       L     N+ +F  G  +
Sbjct: 227 PEKAALIPKSSESLELSLKNDEIFYKGAVR 256


>gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
 gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
          Length = 312

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 26/176 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  V +L +         ET++     G+ +     +G  +
Sbjct: 83  FMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVARTEEG-YA 141

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175
           +DMG     W  I       +   +  H+     +  R    +SMGNPH +  +  E  L
Sbjct: 142 IDMGP----WSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGKL 195

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVGLT 222
              DL S   +   +P   +G N+       LE+ D         +R +ERGVG T
Sbjct: 196 DGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGET 248


>gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567]
 gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567]
          Length = 312

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 26/176 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  V +L +         ET++     G+ +     +G  +
Sbjct: 83  FMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVARTEEG-YA 141

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175
           +DMG     W  I       +   +  H+     +  R    +SMGNPH +  +  E  L
Sbjct: 142 IDMGP----WSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGKL 195

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVGLT 222
              DL S   +   +P   +G N+       LE+ D         +R +ERGVG T
Sbjct: 196 DGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGET 248


>gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8]
 gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8]
          Length = 273

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124
           N DGS+   CGN  RCV  F    +   ++       R I +  E  +  I  ++G   I
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPN-IIESNLGNYKI 118

Query: 125 LDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           LD   IP  R  +F   D    HI           +++  G PH + FV++  +   L S
Sbjct: 119 LD--TIPALRCKNFFSSDSVLEHISTF--------YLIDTGVPHLVGFVKNKEW---LNS 165

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 166 LNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSV 248
           T +  ++
Sbjct: 226 TPKKAAL 232


>gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27]
 gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27]
          Length = 272

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 18/182 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISIRIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N    +++  G PH + FV++      L S 
Sbjct: 110 ESNLGNYKILDTIPALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKKL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   + T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFYNT 226

Query: 243 NR 244
            +
Sbjct: 227 PK 228


>gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 41/242 (16%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKEN 111
           + VD F+   N DGS  + CGNG+R    F  +   +    FT  +  G     + + + 
Sbjct: 74  SGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGARPVRIHSADE 133

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            D  +SV MG  +L+                   +G            V +GNPH    V
Sbjct: 134 TDAEVSVSMGPVVLEGA---------------GRVGIAGRTLTGE--AVDVGNPHLACVV 176

Query: 172 ED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGV 219
           +     DL   DL +   L A    F  G N+ I    +  S          +R +ERGV
Sbjct: 177 DGLTVADLAGLDLTTGAELDAAQ--FPHGANVEILTPLTAASDGGSADFHAHMRVFERGV 234

Query: 220 GLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G T +CG+   A+  A  SG   ++  AV++ + GG +L+   D + V + G ++    G
Sbjct: 235 GETRSCGTGLVAAAAAALSGAGRESG-AVAITVPGGDVLVTVADGSAV-LRGPSRLVARG 292

Query: 278 KL 279
           +L
Sbjct: 293 EL 294


>gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
 gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
          Length = 273

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 18/210 (8%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
               ++       L     N+ +F  G  +
Sbjct: 227 PEKAALIPKSSESLELSLKNDEIFYKGAVR 256


>gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104]
 gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104]
          Length = 294

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 25/175 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G     + A +    
Sbjct: 71  DWYMDYRNSDGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE- 172
            +SVDMG+      L    ++F+     R   G            V +GNPH A    E 
Sbjct: 131 DVSVDMGKAN---TLGSGGKAFEATVGGRRFAG----------LAVDVGNPHLACLDPEL 177

Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             D+L   D+A+  +  A    F +GVN+ +    +   + +R  ERGVG T +C
Sbjct: 178 SVDELAALDVAAPVSFDAAQ--FPDGVNVEVLTAPAAGVVHMRVHERGVGETRSC 230


>gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
 gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
          Length = 290

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 37/244 (15%)

Query: 51  LIHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-- 104
           ++H   D  +  D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G  
Sbjct: 59  VLHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPR 118

Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
              +   +     ++VDMG+              +K+      +G        +   V +
Sbjct: 119 PVTVHHADQTHADVTVDMGK-------------ANKLGPGEAVVGGRR----LSGVAVDV 161

Query: 163 GNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           GNPH +  ++  L    LA+      +   H  F EGVN+ +    +   + +R  ERGV
Sbjct: 162 GNPH-LACLDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF-------MTGEA 271
           G T +CG+   A+ VA+     +    ++V++ GG + +   D   +         +GE 
Sbjct: 221 GETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEI 280

Query: 272 KKEW 275
            +EW
Sbjct: 281 SEEW 284


>gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695]
 gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695]
          Length = 273

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTF-ETIRGILVAKENRDGSISVDMGE-PI 124
           N DGS+   CGN  RCV  F     +  K+  F    R I +  E  +  I  ++G   I
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPN-IIESNLGNYKI 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPV-NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           LD  +IP  R         F  G V  H+     +++  G PH + FVE+      L S 
Sbjct: 119 LD--VIPALRC-----EKFFSSGSVLEHI--PTFYLIDTGVPHLVGFVENK---EGLNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
 gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
          Length = 273

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125
           N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   IL
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLAS 182
           D  +IP  R       ++F     N   L N P  +++  G PH + FV++      L S
Sbjct: 120 D--VIPALRC------EKFF---TNDSVLENIPTFYLIDTGVPHLVGFVKNK---EGLNS 165

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 166 LNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSV 248
           T +  ++
Sbjct: 226 TPKKAAL 232


>gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100]
 gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILV 107
           +++ HD  D   + +    NCDGS+   CGNG R    F    +K+  +  F T  G++ 
Sbjct: 45  VIVPHDRYDFEWEFY----NCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIK 100

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPH 166
           +  + D          I++ KL  +    +  + +DR   G             + G PH
Sbjct: 101 SFVDDD----------IVEIKLSGIKDIKEAFEYKDRIWQG------------CNTGVPH 138

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAAC 225
            + FV DDL  +D+      L K        N++ A+V   E + +RT+ERGV   T AC
Sbjct: 139 IVTFV-DDLSEFDIN-----LCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLAC 192

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
           G+   A    +    K    + +K      L    +   +F  G+ K
Sbjct: 193 GTGMGACFYLAYLNQKVKDDILIKPKSNESLYFRLEEEQIFFRGKVK 239


>gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510]
 gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510]
          Length = 111

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           + A  D  + I N DGSEV  CGN  RC+ +++      ++K+ T ET+ GI V K + +
Sbjct: 4   KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63

Query: 114 G----SISVDMGEPIL 125
                 ++VDM  P+L
Sbjct: 64  NELVEEVTVDMDLPLL 79


>gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
 gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
          Length = 273

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12]
 gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12]
          Length = 272

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K   F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N    +++  G PH + FV++  +   L S 
Sbjct: 110 ESNLGNYKILDTIPNLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVKNKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +  
Sbjct: 167 NTLELRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNA 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKATL 232


>gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 24/177 (13%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111
           A  D F+   N DGS  + CGNG R    +L SR  ++   FT  T  G     + + + 
Sbjct: 68  APTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRVTVHSCDE 127

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +   ++V+MG   +         S   M  + +               V MGNPH    V
Sbjct: 128 QAAEVTVEMGPAEV------TGVSTASMAGESY-----------AGLGVDMGNPHLAAVV 170

Query: 172 ED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
              D       +F   +     F  GVN+ +        + +R +ERGVG T +CG+
Sbjct: 171 PGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETRSCGT 227


>gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99]
 gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99]
          Length = 290

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 37/244 (15%)

Query: 51  LIHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-- 104
           ++H   D  +  D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G  
Sbjct: 59  VLHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPR 118

Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
              +   +     ++VDMG+              +K+      +G        +   V +
Sbjct: 119 PVTVHHADQTHADVTVDMGK-------------ANKLGPGEAVVGGRR----LSGVAVDV 161

Query: 163 GNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           GNPH +  ++  L    LA+      +   H  F EGVN+ +    +   + +R  ERGV
Sbjct: 162 GNPH-LACLDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVF-------MTGEA 271
           G T +CG+   A+ VA+     +    ++V++ GG + +   D   +         +GE 
Sbjct: 221 GETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSLLRGPSVLVASGEI 280

Query: 272 KKEW 275
            +EW
Sbjct: 281 SEEW 284


>gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
 gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
          Length = 280

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 53/238 (22%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISV 118
           F+   N DGS  + CGNG R  VR+L     +     +F   T  G++ A+   +  ++V
Sbjct: 67  FMDYWNSDGSVAEMCGNGARVFVRYLLEAGLAVPSGAAFPVATRAGLVRARVEGE-ELAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +M  P L    I +                ++ L L     V +GNPH +  V   L   
Sbjct: 126 EMRRPRLAGASIAV----------------LDGLALPG-TAVDVGNPHLVCPVPAGL--- 165

Query: 179 DLASFGNLLAKHP-----MFSEGVNLSIARVTSLES-------LDLRTWERGVGLTAACG 226
           +LA+    L + P     +F  GVN+    +T  +        + +R +ERG   T +CG
Sbjct: 166 ELAALD--LNRAPEIDPVIFPTGVNVEF--ITPGDPTGGTDGYVRMRVYERGSAETRSCG 221

Query: 227 SAACASVVASGCLHKTNR---AVSVKMLGGGLLIE------WHDNNHVFM-TGEAKKE 274
           + ACA  VA+  L    R    V+V + GG L++       W     V + TGE   E
Sbjct: 222 TGACA--VAAVVLRDAGRDTGVVAVDVPGGRLVVTQTAQACWLAGPAVLVATGEVAAE 277


>gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 278

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 35/183 (19%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKEN 111
           ++ D F+   N DGS  + CGNGMR    +L  +   K K F   T  G     + A + 
Sbjct: 66  SAADWFMDYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADE 125

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAI 168
           R   +SV+MGE  +                     G    +  +  F    V +GNPH  
Sbjct: 126 RTADVSVEMGEASV--------------------TGVSTCVLGQTTFAGLGVDVGNPHLA 165

Query: 169 FFV----EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             +    +D L    +            F  GVN+ IA      ++ +R  ERGVG T +
Sbjct: 166 CIIPTLTKDQLEALPIQD--GFAVDTEFFPAGVNVEIATELVDGAVYMRVNERGVGETRS 223

Query: 225 CGS 227
           CG+
Sbjct: 224 CGT 226


>gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 294

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 25/175 (14%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G     + A +    
Sbjct: 71  DWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE- 172
            +SVDMG+      L     +F+     R   G            V +GNPH A    E 
Sbjct: 131 DVSVDMGKAN---TLGGGGEAFEATVGGRRFAG----------LAVDVGNPHLACLDPEL 177

Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             D+L   D+A+  +  A    F +GVN+ +    +   + +R  ERGVG T +C
Sbjct: 178 SVDELAALDVAAPVSFDAAQ--FPDGVNIEVLTAPAAGVVHMRVHERGVGETRSC 230


>gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
 gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
          Length = 319

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 41/251 (16%)

Query: 8   FAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV-DA--- 62
           F K  G  N  +LV D  G   N T+D + A+  D         LI   + ++V DA   
Sbjct: 9   FTKGHGTENDFVLVADPDGVW-NPTADVVAAI-CDRRAGVGGDGLIRAVRSSAVPDAAGT 66

Query: 63  ------FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKS------FTFETIRGILVAK 109
                 F+   N DGS  + CGNG+R    FL  +R+  +       F   T  G+   +
Sbjct: 67  APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              DG  + D+G     W L     +      D   + P      R    V +GNPH + 
Sbjct: 127 READGQWTADLGP----WALTGGDDAL-GAGSDALVLVPGLDAVARPALSVDLGNPHTVV 181

Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIA-----------RVTSLESLDLRTWE 216
            + D+  L   DL     +    P+  +G N+ +             V  +  + +R  E
Sbjct: 182 ALPDEAELAAADLTRAPEV---RPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHE 238

Query: 217 RGVGLTAACGS 227
           RG G T +CG+
Sbjct: 239 RGSGETRSCGT 249


>gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
 gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
          Length = 285

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 65/165 (39%), Gaps = 26/165 (15%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFT----FETIRGILVAKENRDGSISVDMG 121
           N DGS  + CGNG+R  +  L +   ++R +        T  G        DG   VDMG
Sbjct: 78  NADGSTAEMCGNGIRLFLHVLVTEGLVERTACADGIWVGTRGGPRRVGATADGGYWVDMG 137

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                    P       +D   F               VSMGNPH     + D+   DLA
Sbjct: 138 ------PARPFGAGTAHLDGASF-----------PGRAVSMGNPHLAVLTDVDVDTLDLA 180

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWERGVGLTAAC 225
           +   + A   +F +GVN+    V      + LR  ERGVG T +C
Sbjct: 181 TAPAVDAA--LFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSC 223


>gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4]
 gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4]
          Length = 289

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG----ILVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L  T    R  F   +  G    I+ + +   G
Sbjct: 71  DWFMDYRNADGSIAEMCGNGVRVFAHYLRSTGLETRDEFVVGSRAGGKPVIVHSADGSAG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG       +  L  S   +D   F           N   + +GNPH +  V+  
Sbjct: 131 EVTVDMG------VVRDLGTSAATIDGKVF-----------NGIGIDVGNPH-LACVD-- 170

Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             H   AS   L L   P      F  GVN+ I       ++D+R  ERGVG T +C
Sbjct: 171 -AHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSC 226


>gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20]
          Length = 273

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G PH + FV++      L S 
Sbjct: 110 ESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNT 226


>gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
 gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
          Length = 311

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R    +L      S    +SF   +  G+       DG  +
Sbjct: 81  FMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEITRLADG-YA 139

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V++G   L ++     RS D M + R     +  L       ++MGNPH +  + D    
Sbjct: 140 VNLGPWGLIFEQEATERSIDSMVKPRGWEQALPAL------SITMGNPHTVVALPDAQML 193

Query: 178 YDLASF-GNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSA 228
            +L  F    ++  P+    V   +     +E      + +R +ERGVG T +CG+ 
Sbjct: 194 EELDLFQAPEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVGETLSCGTG 250


>gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 43/196 (21%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTSRMK-RKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F     K   + 
Sbjct: 31  LCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
           +F T  GI+ AK N+D  + V +G      K+  +  +F+++       G    L     
Sbjct: 91  SFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNTFEEL-------GKTWQL----- 131

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
              + G PH + F +      +L  F  +L +        N++  ++     L +RT+ER
Sbjct: 132 --CNTGVPHLVHFCQ------NLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYER 183

Query: 218 GV-GLTAACGS--AAC 230
           GV   T ACG+   AC
Sbjct: 184 GVEDETLACGTGMGAC 199


>gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 116/327 (35%), Gaps = 76/327 (23%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
            AK  G GN  +V             A +A  + D +  +   L         D FIR +
Sbjct: 12  LAKAHGCGNSFVV-------------ATDADDSHDPSAEEVRALCSQAFGIGADGFIRCV 58

Query: 68  -----------NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                      N DGS+ + CGNG+R  V  L     R+        G  +    R G+ 
Sbjct: 59  RSGGAWFMDYRNADGSKAEMCGNGVRVFVDHL-----RREGLVRLAPGESLEVLTRGGTR 113

Query: 117 SVDM--------GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--------PFVV 160
           +V++         E   +        + +   + R  +GP +              P V+
Sbjct: 114 TVELVAEAGGGAAEGCGEGGGAAGCGAAEDGAQYRVDMGPASSPARETVKVSVPGIPGVL 173

Query: 161 S-----MGNPHAIFFVED-------DLYHYDLASFGNLL--AKHPMFSEGVNLSIARVTS 206
           S     M NPH +  V+         L   D A     +  A  P   EG NL +    +
Sbjct: 174 SGIWVDMPNPHTVVAVDSLAALEGAQLPAVDAARVAPQMRPAYEPEPREGTNLELVVDLT 233

Query: 207 LES-----LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGL---- 255
            E      L +R  ERGVG T ACG+  CA+ VA+          S  V + GG +    
Sbjct: 234 REGDEVGHLRMRVLERGVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDI 293

Query: 256 --LIEWHDNN----HVFMTGEAKKEWE 276
             +I+W         VF+TG A +  E
Sbjct: 294 DGVIDWDGPGLTGAPVFLTGPATRVAE 320


>gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
 gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
          Length = 298

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 41/232 (17%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVD 119
           F+   N DGS  + CGNG R    F          + F   T  G+ +       S+   
Sbjct: 77  FMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGVKMLS-----SLGAQ 131

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--------FVVSMGNPHAIFFV 171
            G          L +   ++D   + +G +    +  P          V MGNPH +  +
Sbjct: 132 PG----------LGQHVFRVDMGGWSMGELYAYTVSIPGQPGQAPGTFVDMGNPHVVAVI 181

Query: 172 EDDLYHYDLASFGNLLAKH-----PMFSEGVNLSIARVTSLES------LDLRTWERGVG 220
           ED      L    +L   H     P    G N+   R+  ++         +R +ERG G
Sbjct: 182 ED--AQSTLPVIDDLDLTHAPKVEPQLDHGQNVEFVRIDDMDERADQGEATMRVYERGCG 239

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            T +CG+  CA+ +        N    + + GG L +   DN+ V +TG A+
Sbjct: 240 ETLSCGTGLCATAITLRARTGINH-WRITVAGGILDVAVTDND-VQLTGNAE 289


>gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 33/181 (18%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK--------E 110
           F+   N DGS  + CGNG+R     L +          F  E   G    +        +
Sbjct: 101 FMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGGEPKFPIEIGVGTRAGRKIVKIHEAD 160

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            +   +SVDMG P++                    IG  N   L     V MGNPH    
Sbjct: 161 AQQAKVSVDMGRPVV-------------TGMSTASIGGFNLAGLG----VDMGNPHLAAI 203

Query: 171 VEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + + L    LA       +      F  GVN+ +A      ++ +R  ERGVG T +CG+
Sbjct: 204 IPN-LTAEKLAELPIGEKVTWDEEFFPTGVNVEVATPLEDGAVHMRVHERGVGETRSCGT 262

Query: 228 A 228
            
Sbjct: 263 G 263


>gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977]
 gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium
           abscessus]
          Length = 295

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 50/248 (20%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR--- 112
           +S D F+   N DGS  + CGNG+R    +L S     R  F   ++ G    + N    
Sbjct: 68  SSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPVRINSWSQ 127

Query: 113 -DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
               ++VDMG P+ ++   + I   R F  +                    + +GNPH  
Sbjct: 128 LTADVTVDMG-PVKEFGAGEAIVGGRRFSGL-------------------AIDVGNPHLA 167

Query: 167 ---AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---LESLDLRTWERGVG 220
              A+   E  L   D+ +   +     +F +GVN+ +    S     ++ +R  ERGVG
Sbjct: 168 CVDAVLTTE-QLRILDVGA--PVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGVG 224

Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE-------WHDNNHVFMTGEA 271
            T +CG+   A+  A+   H   R   V V + GG + +            + +   GE 
Sbjct: 225 ETRSCGTGTVAAAYAA-LRHIGQRTGEVVVNIPGGQVRVTVTGESSFLRGPSMLLADGEI 283

Query: 272 KKEWEGKL 279
             EW G +
Sbjct: 284 SDEWWGGI 291


>gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
 gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
          Length = 291

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 36/181 (19%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF----------ETIRGILVAKE 110
           D ++   N DGS  Q CGNG+R    +L +     +  F            + G   A+ 
Sbjct: 71  DWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESADEFVVGSLAGPRPVVLHGFDPARA 130

Query: 111 NRDGSISVDMGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
                ++V+MG+         +   RSFD +                    V +GNPH  
Sbjct: 131 TT-AEVTVEMGKANQFGAGSAVVGGRSFDGL-------------------AVDVGNPHLA 170

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +    DDL   D+A+   +     +F +GVN+ +   +   ++ +R  ERGVG T +CG
Sbjct: 171 CVGITADDLAALDVAA--PVSFDPALFPDGVNVEVLTASVDGAVSMRVHERGVGETRSCG 228

Query: 227 S 227
           +
Sbjct: 229 T 229


>gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A]
          Length = 273

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N+  L N P  +++  G PH + FV++      L S 
Sbjct: 110 ESNLGNYKILDVIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  + +   + T
Sbjct: 167 NTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 22/212 (10%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTF-ETIRGILVAKENRDGSISVDMGE-PI 124
           N DGS+   CGN  RCV  F     +  K+  F    R I +  E  +  I  ++G   I
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPN-IIESNLGNYQI 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLA 181
           LD   IP  R        +F     N   L N P  +++  G PH + FV++      L 
Sbjct: 119 LD--TIPALRC------KKFF---TNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LN 164

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           S   L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +
Sbjct: 165 SLNTLELRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFY 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            T +  ++       L     N+ +F  G  +
Sbjct: 225 NTPKKAALIPKSNESLELSLKNDEIFYKGAVR 256


>gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
 gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
          Length = 289

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 27/174 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L +     R  F   ++ G    +L   ++   
Sbjct: 71  DWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPVVLHEADDTTA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V+MG      K +        +   RF           +   V +GNPH +  V+++
Sbjct: 131 DVTVEMG------KAVRCGTGTATVGGRRF-----------SGLAVDVGNPH-LACVDEE 172

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           L    LAS      +      F  GVN+ I       ++ +R  ERGVG T +C
Sbjct: 173 LTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSC 226


>gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 14/208 (6%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125
           N DGS+   CGN  RCV  F     +  K   F   +  +  +     +I  ++G   IL
Sbjct: 60  NSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYKIL 119

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D   IP  +       D   +  +   +L     +  G PH + FV++      L +   
Sbjct: 120 D--TIPALKCKKFFTNDSV-LASIPTFYL-----IDTGVPHLVGFVKNKGLLNSLDTLEL 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
              +H       N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T +
Sbjct: 172 RTLRHDF---NANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACVFYNTPQ 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
             ++       L     N+ +F  G  +
Sbjct: 229 NATLIPKSNEFLELSLKNDEIFYKGAVR 256


>gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
 gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 37/236 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           + K    GN  ++        + + DAIN  +  +    D +++I   Q A  +      
Sbjct: 3   YTKYSASGNDFVIFHTL-IKKDYSQDAINLCNRTEGIGADGLIVIVPNQTADFEWLFY-- 59

Query: 68  NCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPIL 125
           N DGS+   CGNG R V  +   + +   +  F T  G + +  + DG+I    M +P  
Sbjct: 60  NSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITS--SVDGNIVETQMTKP-- 115

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFG 184
                       K+ ++ F    +        +++  G PH I  V+D + Y++DL +  
Sbjct: 116 ------------KIIKEEFEQEGLTW------YLIDTGVPHLITIVDDLEKYNHDLCA-- 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                   +    N++ A++     + +RT+ERGV G T ACG+   A  + +  L
Sbjct: 156 -----KMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANAL 205


>gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G  H + FVE+  +   L S 
Sbjct: 110 ESNLGNYQILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVENKEW---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKATL 232


>gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38]
 gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 20/187 (10%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE-PIL 125
           N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   IL
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLAS 182
           D   IP  R       D           L N P  +++  G PH + FV++      L +
Sbjct: 120 D--TIPALRCKKFFSSDS---------VLENIPMFYLIDTGVPHLVGFVKNKRLLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N+++A + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 169 LELRALRHEF---NANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSV 248
           T +  ++
Sbjct: 226 TPKKATL 232


>gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 65/173 (37%), Gaps = 40/173 (23%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
           F+   N DGS  + CGNG+R   R+L      +       T  G+       D    VDM
Sbjct: 76  FMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSCVGD-EFRVDM 134

Query: 121 G--------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           G        E I+D +     R                         VSMGNPH +  V 
Sbjct: 135 GPARFEGASEAIVDGRRYAGTR-------------------------VSMGNPHLVCRV- 168

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           DD Y  DL     + A+  +F  GVN+          + +R  ERGVG T +C
Sbjct: 169 DDPYTLDLHKVPAVDAQ--LFPTGVNVEFI-TGPANHITMRVHERGVGETRSC 218


>gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57]
          Length = 273

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 18/186 (9%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           N DGS+   CGN  RCV  F     +  K+  F      L  K      IS+ + EP + 
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVF------LAGKR----EISICIEEPNII 109

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRN-P--FVVSMGNPHAIFFVEDDLYHYDLASF 183
              +   +  D +   R      N   L N P  +++  G PH + FV++      L S 
Sbjct: 110 ESNLGNYKILDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGL---LNSL 166

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L  +        N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T
Sbjct: 167 NTLELRALRHEFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNT 226

Query: 243 NRAVSV 248
            +  ++
Sbjct: 227 PKKAAL 232


>gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 316

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 74/195 (37%), Gaps = 31/195 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENRDGSI- 116
           F+   N DGS  + CGN  R     L S   R     +S T  T  G       R G + 
Sbjct: 79  FMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTV--TRLGDLW 136

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDD 174
           +VDMG   L          +D         GP      R    V M NPH +  +  ED+
Sbjct: 137 TVDMGPARLTRPEEADDEGWDTTVMVPGLAGP------RAALSVEMPNPHTVVALGEEDE 190

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD-----------LRTWERGVG 220
           L     A   +  A     P+   G NL +  V   E +D           +R  ERGVG
Sbjct: 191 LEAAVFAGLTDSAAPVVYDPLPEVGTNLELV-VPLGEEVDPDTQAPVGIARMRVLERGVG 249

Query: 221 LTAACGSAACASVVA 235
            T +CG+  CA+ VA
Sbjct: 250 ETLSCGTGCCAAAVA 264


>gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 413

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 115/306 (37%), Gaps = 79/306 (25%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD------AINALSTDDNTHFDQIMLIH- 53
           + +  V F K    GN  +++D     D++ ++      A  A ST      D ++++  
Sbjct: 10  VAAKTVPFVKYTSCGNNFVIVD--ATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQR 67

Query: 54  -------------DFQDA-----SVDAFIRIINCDGSEVQSCGNGMRCVVRFL------T 89
                        ++ DA     + D   R+   +G E   CGNG+ C+  FL      T
Sbjct: 68  SNARTLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVT 127

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP-------ILDWKLIPLARSFDKMD-- 140
                      +   I +     DGS  V++G P       +    L PL  + D ++  
Sbjct: 128 VSNIATEIPLSSPNIISIGSLGYDGSW-VNLGMPRHTPTQLVNRDSLHPLDDTIDVIEEL 186

Query: 141 -----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF------------ 183
                RD               ++V  G PH + F + D    +LASF            
Sbjct: 187 TIQFRRDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPE 246

Query: 184 --------------GNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL-TAAC 225
                         G+ +    +H +F +GV+++ AR+ +L+S+  R +ERG+   T AC
Sbjct: 247 DRRRGLGAWLVHRIGSFINSRCRH-IFPDGVSVNFARIHNLDSVSNRCFERGINRETLAC 305

Query: 226 GSAACA 231
            + A A
Sbjct: 306 STGALA 311


>gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
 gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
          Length = 289

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L +     R  F   +  G    I+ + +   G
Sbjct: 71  DWFMDYRNADGSIAEMCGNGVRVFAHYLRAAGLESRDEFVVGSRAGGKPVIVHSADGAFG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG       +  L  S   +D   F           N   + +GNPH +  V+  
Sbjct: 131 EVTVDMG------VVRDLGTSAATIDGKVF-----------NGIGIDVGNPH-LACVD-- 170

Query: 175 LYHYDLASFGNL-LAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             H   AS   L L   P      F  GVN+ I       ++D+R  ERGVG T +C
Sbjct: 171 -AHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSC 226


>gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv]
 gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97]
 gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11]
 gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987]
 gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92]
 gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503]
 gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17]
 gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85]
 gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210]
 gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207]
 gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506]
 gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475]
 gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11]
 gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148]
 gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           4207]
          Length = 289

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L  +    R  F   ++ G         E    
Sbjct: 71  DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG      K   L      +   RFH              V +GNPH +  V+  
Sbjct: 131 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 172

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           L    LA+      +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 173 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228


>gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A]
 gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
 gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
          Length = 289

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L  +    R  F   ++ G         E    
Sbjct: 71  DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG      K   L      +   RFH              V +GNPH +  V+  
Sbjct: 131 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 172

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           L    LA+      +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 173 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228


>gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase
           Mycobacterium Tuberculosis Dapf
          Length = 290

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L  +    R  F   ++ G         E    
Sbjct: 72  DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 131

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG      K   L      +   RFH              V +GNPH +  V+  
Sbjct: 132 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 173

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           L    LA+      +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 174 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 229


>gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 292

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L  +    R  F   ++ G         E    
Sbjct: 74  DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 133

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG      K   L      +   RFH              V +GNPH +  V+  
Sbjct: 134 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 175

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           L    LA+      +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 176 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231


>gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
 gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
          Length = 292

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 27/176 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L  +    R  F   ++ G         E    
Sbjct: 74  DWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHVEAAYA 133

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG      K   L      +   RFH              V +GNPH +  V+  
Sbjct: 134 DVSVDMG------KANRLGAGEAVVGGRRFH-----------GLAVDVGNPH-LACVDSQ 175

Query: 175 LYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           L    LA+      +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 176 LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231


>gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411]
 gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
 gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411]
 gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
          Length = 288

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 62/308 (20%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA-- 62
           M++F K  G  N  +V+       N+T D +  L+          ++     DA V A  
Sbjct: 1   MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60

Query: 63  -------------FIRIINCDGSEVQSCGNGMRCVVRFL--------------TSRMKRK 95
                        F+   N DGS  + CGNG+R     L               +R  RK
Sbjct: 61  LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGKVTVGEQFGIGTRAGRK 120

Query: 96  SFTFETIRGILVAKENRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL 154
                 + G     EN++ +I SV+MG P             + +      +G +    L
Sbjct: 121 MVEVHELSG-----ENQEHAIVSVEMGAP-------------EVLGVSTAQVGDLKVAGL 162

Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLE--- 208
                V MGNPH +  V  +L   +L        +      F  GVNL +  +T L+   
Sbjct: 163 G----VDMGNPH-LAAVVPNLTALELQKLPIDQQVQFDTEFFPAGVNLEV--LTPLDNAG 215

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFM 267
           ++ +R  ERGVG T +CG+   A+ V++    +     V+V + GG + +E  ++  V  
Sbjct: 216 AVHMRVHERGVGETRSCGTGTVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSVLR 275

Query: 268 TGEAKKEW 275
              A   W
Sbjct: 276 GPSAIVAW 283


>gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
 gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 31/176 (17%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L +     R  F   ++ G    +L   ++   
Sbjct: 71  DWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPVVLHEADDTTA 130

Query: 115 SISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            ++V+MG+ +           R+F  +                    V +GNPH +  V+
Sbjct: 131 DVTVEMGKAVRCGTGTATVGGRTFSGL-------------------AVDVGNPH-LACVD 170

Query: 173 DDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           ++L    LAS      +      F  GVN+ I       ++ +R  ERGVG T +C
Sbjct: 171 EELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSC 226


>gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950]
          Length = 288

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 33/180 (18%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR-DG 114
           A+ D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G      +R DG
Sbjct: 68  AADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLEDRDDFVVGSLAGPRPVSVHRVDG 127

Query: 115 S---ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAI 168
           +   ISVDMG+                       +GP + +     F    + +GNPH +
Sbjct: 128 TTADISVDMGK--------------------ANTLGPGDAVLGGRRFSGVAIDVGNPH-L 166

Query: 169 FFVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             V+ DL    LA+             F +GVN+ I       ++ +R  ERGVG T +C
Sbjct: 167 ACVDPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGETRSC 226


>gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 182

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%)

Query: 77  CGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           CGNG R    F     K   + +F T  GI+ AK N+D  + V +G      K+  +  +
Sbjct: 2   CGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQNT 54

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F+++ +                 +   G PH + F ++      L  F  +L +      
Sbjct: 55  FEELGKTWQ--------------LCDTGVPHLVHFCQN------LDEFDTILCQKMRQKY 94

Query: 196 GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254
             N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G 
Sbjct: 95  NANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGE 154

Query: 255 LLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +   + N  +F  G+ K  +E   + 
Sbjct: 155 KVGFTYKNEELFFEGKVKYCFEANYNF 181


>gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S]
 gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 27/174 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L  T    R  F   +  G     + + ++  G
Sbjct: 71  DWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPVHVHSADHVHG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG      ++  L  S             V    L     + +GNPH +  V+ D
Sbjct: 131 DVTVDMG------RVRELGTS----------TATVGGRVLEG-IGIDVGNPH-LACVDPD 172

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           L    LAS     A       F EGVN+ I       ++ +R  ERGVG T +C
Sbjct: 173 LTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSC 226


>gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152]
 gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 48/241 (19%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILV-AKENRDG 114
           D F+   N DGS  + CGNG+R    +L +  + +       +    R + V A     G
Sbjct: 79  DWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPVTVHAAGPTHG 138

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V MGE           R+           G        +   + +GNPH +  V+  
Sbjct: 139 EVTVAMGE----------VRALGASTATVAGWG-------YSGLGIDVGNPH-LACVDPT 180

Query: 175 LYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLE---SLDLRTWERGVGLTAACG 226
           L    LA     L   P     +F  GVN+ I  +T L+   ++D+R +ERGVG T +CG
Sbjct: 181 LTAEALAKLD--LTVSPGYDPDLFPHGVNVEI--LTPLDEQRAVDMRVYERGVGETRSCG 236

Query: 227 SAAC----ASVVASGC-LHKTNRAVSVKMLGGGLLI------EWHDNNHVFM-TGEAKKE 274
           +       A++ A G  L   + AV+V++ GG + +       W     V + TG    +
Sbjct: 237 TGTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVGLEAGSAWLRGPSVLVATGRLTAD 296

Query: 275 W 275
           W
Sbjct: 297 W 297


>gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
 gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 27/174 (15%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDG 114
           D F+   N DGS  + CGNG+R    +L  T    R  F   +  G     + + ++  G
Sbjct: 71  DWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPVHVHSADHVHG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG      ++  L  S             V    L     + +GNPH +  V+ D
Sbjct: 131 DVTVDMG------RVRELGTS----------TATVGGRVLEG-IGIDVGNPH-LACVDPD 172

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           L    LAS     A       F EGVN+ I       ++ +R  ERGVG T +C
Sbjct: 173 LTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSC 226


>gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni]
          Length = 182

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 77  CGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           CGNG R    F     K   + +F T  G++ AK N+D  + V +G      K+  +  +
Sbjct: 2   CGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQNT 54

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F+++ +                 + + G PH + F ++      L  F  +L +      
Sbjct: 55  FEELGKTWQ--------------LCNTGVPHLVHFCQN------LDEFDTMLCQKMRQKY 94

Query: 196 GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254
             N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G 
Sbjct: 95  NANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGE 154

Query: 255 LLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +   + N  +F  G+ K  +E   + 
Sbjct: 155 EVGFAYKNEELFFEGKVKYCFEANYNF 181


>gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 28/201 (13%)

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF--------ETI 102
            +  +A  + F+   N DGS  + CGNG+R     L  T R+   S           +T+
Sbjct: 73  QEQAEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTV 132

Query: 103 RGIL---VAKENRDGSISVDM---GEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLR 155
           R +L   + K+  D + SV+    G     W +I +   S D  D +   +        R
Sbjct: 133 RTVLNPALGKQTGDATASVEQTLPGSAADSWYMIDMGEWSLD--DSEDVIVSTSGIEVPR 190

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES------ 209
               V  GNPH +  + +     + A   +     P+  +G N+    +    S      
Sbjct: 191 PGMRVETGNPHTVVALAES-AELESAELRDAPVLDPVPPQGSNVEYIVMEPARSDVAGGE 249

Query: 210 --LDLRTWERGVGLTAACGSA 228
             L +R +ERGVG T +CG+ 
Sbjct: 250 GALRMRVFERGVGETRSCGTG 270


>gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 45/218 (20%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    +   + +  K+ +F+T  GI+ A               
Sbjct: 57  EFYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKAS-------------- 102

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDL 175
                          +D D   +       L  PF+           G PH + FV D+L
Sbjct: 103 ---------------IDNDFVEVALTAPKKLSEPFIEYGFEWSFYDTGVPHLVTFV-DNL 146

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             +DL+    L  K+       N++ A +     L++RT+ERGV   T ACG+   AS  
Sbjct: 147 SKFDLSVCSELRKKY-----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFY 201

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
                 K N  + V       L    D   ++  G+ K
Sbjct: 202 TGVDRFKFNPCLKVNPKSKEDLWLKFDGETIYFKGKVK 239


>gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
 gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
          Length = 267

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 26/194 (13%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILV 107
           ++L ++ +D+++       N DGS    CGN  R V  +   +++  ++ +F +  GI+ 
Sbjct: 52  VVLPYESKDSNIAYKWEFYNADGSFAGMCGNASRAVSLYAFHNKLATQNHSFLSGAGIID 111

Query: 108 AK-----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
                  +++   +  ++GE +L   ++         +  +  +    H+ +R P +V  
Sbjct: 112 TSIKEIIDSKHAYVQSNLGEYVLQGNIV---------ENKKGSVYEFEHIIMRIPHLVYF 162

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GL 221
                 F    +L   DL    +L  K+       N++IA +   + +   T+ERGV  +
Sbjct: 163 ATSMKEF----NLLSNDLEFLSHLRHKYD-----ANVNIA-IRENDKIYYVTFERGVENI 212

Query: 222 TAACGSAACASVVA 235
           T ACG+ ACA  V+
Sbjct: 213 TQACGTGACAVYVS 226


>gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
 gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
          Length = 252

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 33/223 (14%)

Query: 65  RIINCDGSEVQSCGNGMR-CVVRFLTSRMKRKSFTFETIRGILVAK--EN--RDGSISVD 119
              N DGS    CGNG R C      + +   +  F T  G++ A+  EN  + G +  +
Sbjct: 57  EFYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESE 116

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P    ++I     FD                  N ++++ G PH + + +      +
Sbjct: 117 LTPP----EIIETEIEFDG----------------HNWWLINTGVPHLVRYTD------N 150

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           +  F    A+   +    N++I  +    +L +RT+ERGV   T ACG+   A    +  
Sbjct: 151 IKEFDTEEARELRYVYNANVNIMYIED-GNLRVRTYERGVEDETLACGTGMAACFYRAYK 209

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                  + V    G  L   ++   +   G  KK +E + D+
Sbjct: 210 EGNVQNNIEVYPTSGDTLYLGYNGKTITFKGRVKKTFETEWDV 252


>gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
 gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
          Length = 302

 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 38/185 (20%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDG 114
           D F+   N DGS  + CGNG+R    FL +R  +    FT  +  G     + + +    
Sbjct: 77  DWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGGRPVTVHSHDALSA 136

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            ++V+MG+  +D         FD   R  D  ++G            V +GNPH    V 
Sbjct: 137 DVTVEMGQATVD---------FDAAVRIGDDLYVG----------TKVDVGNPHLACVVG 177

Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTA 223
               D+L   D  +   L A    F  G N+ +    ++      +  +R +ERGVG T 
Sbjct: 178 DLDVDELAAVDFTAGVRLEAAD--FPHGANVELLTRPAVADDGVLTAHMRVFERGVGETR 235

Query: 224 ACGSA 228
           +CG+ 
Sbjct: 236 SCGTG 240


>gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228]
 gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228]
          Length = 249

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 41/245 (16%)

Query: 51  LIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMRCVVRFLTS-RMKRKSF 97
           L + ++    D FI I+            N DGS    CGNG R    F       +   
Sbjct: 31  LCNRYEGIGADGFIVILPHKKYDFEWEFYNNDGSTASMCGNGSRAAAHFAHHINGIKPHM 90

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
            F T  G++ A  + + S+ V +G      K+  +  +F + +              +N 
Sbjct: 91  AFLTGAGVIKANVD-NNSVEVSLG------KIKNIQDAFSECE--------------KNW 129

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
            +   G PH + F E +L  +DL      L K        N++  +V +  +L +RT+ER
Sbjct: 130 QLCDTGVPHLVHFCE-NLDEFDLK-----LCKQMREKYNANVNFVKVENDNTLRVRTFER 183

Query: 218 GV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GV   T ACG+   A    +    K +    V    G  L    +N  +F  G+ +  +E
Sbjct: 184 GVEDETQACGTGMGACFYLAFLNKKIHNQARVIPKSGEELSFKFENEELFFKGKVRYCFE 243

Query: 277 GKLDI 281
              + 
Sbjct: 244 ANYNF 248


>gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
 gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
          Length = 311

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 27/176 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  V +L +    +    ET++     G+       +G  +
Sbjct: 83  FMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVKTVARTEEG-YA 141

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDD 174
           +DMG     W  I       +  R+      V+   L+ P     +SMGNPH +  +  D
Sbjct: 142 IDMGP----WSFI-----HGEAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSD 192

Query: 175 --LYHYDLASFGNLLAKHPM------FSEGVNLSIARVTSLESLDLRTWERGVGLT 222
             L   DL S   +    P+      F   V+L +     + ++ +R  ERGVG T
Sbjct: 193 GKLDGLDLHSLPQV-NPAPVNGTNVEFVVPVDLDVESGAQVGAIRMRVHERGVGET 247


>gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
 gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
          Length = 241

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 50/181 (27%)

Query: 65  RIINCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           +  N DGSE   CGNG R    +       +S+MK     F T  G++ A+ + D     
Sbjct: 57  QFYNADGSEASMCGNGSRAAALYAYKYDLASSKMK-----FLTGAGVIEAEVDGD----- 106

Query: 119 DMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                I++ +L P      FD+ +                  +   G PH +    D L 
Sbjct: 107 -----IVETQLTPYKELGKFDEWE------------------LFDTGVPHLVKL--DKLE 141

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           ++++     L  KH       N++IA V     L +RT+ERGV   T ACG+  CAS + 
Sbjct: 142 NFNINECRELRYKH-----NANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLK 195

Query: 236 S 236
           +
Sbjct: 196 A 196


>gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20]
 gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20]
          Length = 249

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 42/261 (16%)

Query: 35  INALSTDDNTHFDQIMLIHDFQDASVDAFIRII------------NCDGSEVQSCGNGMR 82
           INA    D +   +  L + ++    D FI I+            N DGS    CGNG R
Sbjct: 16  INASEKKDRSALAK-ELCNRYEGIGADGFIVILPHKKYDFEWEFYNNDGSTASMCGNGSR 74

Query: 83  CVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141
               F       +    F T  G++ A  + + S+ V +G      K+  +  +F + + 
Sbjct: 75  AAAHFAHHINGIKPHMAFLTGAGVIKANVDNN-SVEVSLG------KIKNIQDAFSECE- 126

Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI 201
                        +N  +   G PH + F E +L  +DL      L K        N++ 
Sbjct: 127 -------------KNWQLCDTGVPHLVHFCE-NLDEFDLK-----LCKQMREKYNANVNF 167

Query: 202 ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH 260
            +V +  +L +RT+ERGV   T ACG+   A    +    K +    V    G  L    
Sbjct: 168 VKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARVIPKSGEELSFKF 227

Query: 261 DNNHVFMTGEAKKEWEGKLDI 281
           +N  +F  G+ +  +E   + 
Sbjct: 228 ENEELFFKGKVRCCFEANYNF 248


>gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
 gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-----GI 105
           LI +  DA    F+   N DGS  + CGNG+R  V +L +    +    ET++     G+
Sbjct: 73  LIEEHPDAV--WFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGV 130

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSM 162
                  +G  ++DMG     W  I          R+      V+   L+ P     +SM
Sbjct: 131 KTVARTEEG-YAIDMGP----WSFI-----HGDAAREGGEDCLVSARGLKTPRAGLSISM 180

Query: 163 GNPHAIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDL 212
           GNPH +  +  E  L   DL S   +   +P    G N+       L+        ++ +
Sbjct: 181 GNPHTVVMLGSEGKLDGLDLHSLPQV---NPAPVNGTNVEFVVPVDLDVESGAHVGAIRM 237

Query: 213 RTWERGVGLT 222
           R  ERGVG T
Sbjct: 238 RVHERGVGET 247


>gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 42/245 (17%)

Query: 49  IMLIHDFQDASVDAF-IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGI- 105
           ++L  D +D+   A+     N DGS+ + CGN  R +  +     +  +  +F +  GI 
Sbjct: 48  LLLGQDSKDSKKYAYEWEFYNADGSKAKMCGNASRSIGHYAFVEGIAPRKHSFLSQAGII 107

Query: 106 -LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-- 162
            ++  E+    +  D+G     +KL+                    H+   NP+ V    
Sbjct: 108 GIIIDESDANLVQSDLGA----YKLVE------------------EHIVESNPYGVKAWA 145

Query: 163 ----GNPHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR-TWE 216
               G PH + FV D  +  Y    F   L +   ++  VNL+    +S +S  L  T+E
Sbjct: 146 LLDSGVPHLVGFVNDKKMLTYSKDEFLQTLREK--YNANVNLAYIDESSDKSRILYMTYE 203

Query: 217 RGV-GLTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK- 273
           RGV  +T ACG+ A A    +  L     +A+ +      L ++  +N H+   G+ ++ 
Sbjct: 204 RGVEDITQACGTGAAAVFAMALRLGLCGKKALLIPPSNEILELQMTENQHILFKGKVQRI 263

Query: 274 ---EW 275
              EW
Sbjct: 264 AICEW 268


>gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
 gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
          Length = 297

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISV 118
           F+   N DGS  Q CGNG+R  V  L       + R +      R  +       G  +V
Sbjct: 72  FMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTSGGYAV 131

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFH--IGPVNHLFLRNPFV-VSMGNPHAIFFVEDDL 175
           DMG         P + +  ++ R+R    +     L +  P V + MGNPH +  + +  
Sbjct: 132 DMG---------PWSFTRGELARERGSDCVVTAAGLTVPRPGVSIGMGNPHTVVVLSEG- 181

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARV-----TSLESLDLRTWERGVGLT 222
              D        A  P+  +G N+          T L  L++R  ERGVG T
Sbjct: 182 EKLDTLDLHTAPAVDPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGET 233


>gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
 gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
          Length = 290

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 29/176 (16%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI--LVAKENRDGS 115
           F+   N DGS  + CGNG R    +L SR      +   F   T  G+  +VA       
Sbjct: 70  FMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMVAVPR---G 126

Query: 116 ISVDMGEPILDWKLIPLA----RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            +VD+G+    W+L        R  D + +      P+  L L       +GNPH +  +
Sbjct: 127 WAVDLGQ----WRLARAEEAERRGMDSVVQVHGSPDPLPALSL------DLGNPHTVVAL 176

Query: 172 EDDLYHYDLASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
              ++   L++     A H  P   +G N+          + +R  ERG G T +C
Sbjct: 177 PPSVH---LSALDLSDAPHIDPHPEQGSNVEFVHAIEHAHIGMRVHERGSGETRSC 229


>gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group]
 gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group]
          Length = 68

 Score = 41.6 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
           VG T ACG+ ACA VVA+    +  R   V + GG L IEW  D+NH++MTG A+  + G
Sbjct: 5   VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64


>gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
 gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 42/185 (22%)

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN 111
           HDF+           N DGS    CGNG R    +     +   S  F T  G++ A   
Sbjct: 53  HDFE-------WEFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVE 105

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAI 168
            D  +  D+  P++                       VN   + +    +++  G PH I
Sbjct: 106 GD-MVQSDLTPPVI-----------------------VNQEIVESGMKWWLIDTGVPHLI 141

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGS 227
            F + D+ H+++      LA+        N++IA +    +L +RT+ERGV   T ACG+
Sbjct: 142 TF-DADIEHFNID-----LARTLRHRYNANVNIASINLDGTLRVRTYERGVEDETLACGT 195

Query: 228 AACAS 232
              AS
Sbjct: 196 GMAAS 200


>gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
 gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 46/246 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIH---DFQDASV- 60
           +DF K  G  N  +++   G   ++T   + AL         D ++ I    D  DA V 
Sbjct: 4   IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63

Query: 61  ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---I 105
                     D F+   N DGS  + CGNG+R     LT  S +    F   +  G   +
Sbjct: 64  DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASSLVPGPEFVVGSRAGGRPV 123

Query: 106 LVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMG 163
           +V   + + + +SV MG   +         S   +D RD   I             V +G
Sbjct: 124 VVHHADPEAADVSVAMGPATV------FGSSSAGVDGRDLAGI------------AVDVG 165

Query: 164 NPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           NPH    V      DL   D+AS  +    H +F  G N+ +       ++ +R  ERG 
Sbjct: 166 NPHLACVVPGLTAADLGGLDVASPPSF--DHGLFPHGTNVEVITPLVDGAVHMRVHERGS 223

Query: 220 GLTAAC 225
           G T +C
Sbjct: 224 GETRSC 229


>gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
 gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
          Length = 281

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 30/180 (16%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENR 112
           S D F+   N DGS  + CGNG R    +L S   +   +FT  T  G     + + +  
Sbjct: 69  SADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQVTVHSCDAT 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             S++V+MG      ++  ++ +          +G  ++  L     V MGNPH    + 
Sbjct: 129 AASVTVEMGP----ARVTGVSTA---------SVGGESYAGLG----VDMGNPHLAAVIP 171

Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
               + L   DL +    +     F  GVN  +        + +R +ERGVG T +CG+ 
Sbjct: 172 GLEPEALAAKDLTA---PVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGTG 228


>gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
 gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
          Length = 307

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 47/248 (18%)

Query: 6   VDFAKMEGIGNK-ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-----AS 59
           V F+K  G GN  IL+ D  G HD   +  + A         D  +     ++     A 
Sbjct: 12  VSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGTAV 71

Query: 60  VDA------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108
           +DA      F+   N DGS  + CGNG+R  V+FL           +     T  G+ + 
Sbjct: 72  LDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVKLV 131

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHA 167
           +    G  SVDMG+    WK   + ++ +  DR    +   N L +  P + ++ GN H 
Sbjct: 132 RRTAAG-FSVDMGQ----WKFT-MPQTAE--DRGVDSLVTANGLDVARPALSINTGNAHT 183

Query: 168 IFFV-------EDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRT 214
           +  +       E DL+   +          P+   G N+  A       V  +  + +R 
Sbjct: 184 LVALAHRAELDELDLHRAPIVD--------PVPEHGSNVEFALPHDPLVVGGIAEISMRV 235

Query: 215 WERGVGLT 222
           +ERGVG T
Sbjct: 236 FERGVGET 243


>gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
 gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
          Length = 293

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G              
Sbjct: 71  DWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGP------------- 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFV---------VSMGNP 165
               P++          FD   R R  +    G VN L   +  V         + +GNP
Sbjct: 118 ---RPVV-------LHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNP 167

Query: 166 HAIFFVEDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H +  V+  L   +LA+  ++ A        F +GVN+ +       ++ +R  ERGVG 
Sbjct: 168 H-LACVDTTLTEAELAAL-DVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGE 225

Query: 222 TAACGSA 228
           T +CG+ 
Sbjct: 226 TRSCGTG 232


>gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
 gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
          Length = 313

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 44/186 (23%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G              
Sbjct: 91  DWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGP------------- 137

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHI----GPVNHLFLRNPFV---------VSMGNP 165
               P++          FD   R R  +    G VN L   +  V         + +GNP
Sbjct: 138 ---RPVV-------LHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGRRFTGLGIDVGNP 187

Query: 166 HAIFFVEDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           H +  V+  L   +LA+  ++ A        F +GVN+ +       ++ +R  ERGVG 
Sbjct: 188 H-LACVDTTLTEAELAAL-DVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGE 245

Query: 222 TAACGS 227
           T +CG+
Sbjct: 246 TRSCGT 251


>gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
 gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 36/236 (15%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKENRDGSIS 117
           F+   N DGS  + CGNG+R  V FL +     +         T  G+L  +   D   +
Sbjct: 76  FMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIETD-RYA 134

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DL 175
           VDMG          L   FD        +G       R    +++ NPH +  +ED   L
Sbjct: 135 VDMGRWSAPGGAEALEAGFDA------SVGVAGLDSPRPGLRLALPNPHVVVALEDVAQL 188

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-----------------LRTWERG 218
              DL     +    P+   G N+ +      +  D                 +R  ERG
Sbjct: 189 ESIDLTKPPRV---DPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRMRVHERG 245

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAK 272
           VG T +CG+ ACA+ +A              V + GG L +     +HV ++G A+
Sbjct: 246 VGETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGPAE 301


>gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
 gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
          Length = 281

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 30/179 (16%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG---ILVAKENRD 113
           S D F+   N DGS  + CGNG R    +L S   +   +FT  T  G   + V   N  
Sbjct: 69  SADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQVTVHSCNAT 128

Query: 114 G-SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             S++V+MG        +    +          +G            V MGNPH    + 
Sbjct: 129 AASVTVEMGP-----ARVTGVSTASVAGESYAGLG------------VDMGNPHLAAVIP 171

Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
               + L   DL +    +     F  GVN  +        + +R +ERGVG T +CG+
Sbjct: 172 GLEPEALAAKDLTA---PVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227


>gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
 gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
          Length = 292

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 33/183 (18%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111
           A+ D F+   N DGS  + CGNG+R    +L +     +  F   +  G    ++   + 
Sbjct: 71  AAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPVVVHGYDA 130

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFF 170
             G ++V MG PI D     L  S   +D   F  +G            + +GNPH +  
Sbjct: 131 THGDVTVAMG-PIKD-----LGTSSATIDGRVFAGVG------------IDVGNPH-LAC 171

Query: 171 VEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           V++ +    L++    L+  P      F  GVN+ I        + +R  ERGVG T +C
Sbjct: 172 VDEHVTAEVLSALD--LSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSC 229

Query: 226 GSA 228
           G+ 
Sbjct: 230 GTG 232


>gi|323524689|ref|YP_004226842.1| sodium/hydrogen exchanger [Burkholderia sp. CCGE1001]
 gi|323381691|gb|ADX53782.1| sodium/hydrogen exchanger [Burkholderia sp. CCGE1001]
          Length = 667

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 25/120 (20%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            PHA+  V D +   +LA FG +     MFS G+  S+A++ S+  L       G+GL  
Sbjct: 41  GPHALGLVPDSVGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92

Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
             G+ A A                 S+   G L  ++ A+  KML   L IE     ++F
Sbjct: 93  VLGTIAVAVTLGFVFERWVHIKWQASIALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152


>gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 321

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 91/244 (37%), Gaps = 36/244 (14%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGI-LVAKENRDGSI- 116
           F+   N DGS  + CGNG+R    F  S     +        T  G+  V KE     + 
Sbjct: 88  FMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTELALGTRAGVKRVRKETGPDGVP 147

Query: 117 --SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--E 172
             +VD+G     W+L   A +          +        R    V +GNPH +  +   
Sbjct: 148 WYAVDLGP----WRLPGGAEAAAAGADAAVAV--RGWAAPRPALSVDLGNPHTVVALGST 201

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----------LDLRTWERGVGLT 222
           D+L   DL     +         G N+ +  V  LE           + +R  ERGVG T
Sbjct: 202 DELARIDLTQAPQVAPP---PPHGTNVEL--VVPLEETTSGAETAGRVRMRVHERGVGET 256

Query: 223 AACGSAACASVVASGCLHKTNRAVS-----VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
            +CG+ A A+ +A                 V++ GG L +    + H  + G A+  + G
Sbjct: 257 QSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVRVLTDGHAELAGPAQLVFSG 316

Query: 278 KLDI 281
           +  +
Sbjct: 317 ETTL 320


>gi|186475101|ref|YP_001856571.1| sodium/hydrogen exchanger [Burkholderia phymatum STM815]
 gi|184191560|gb|ACC69525.1| sodium/hydrogen exchanger [Burkholderia phymatum STM815]
          Length = 667

 Score = 39.3 bits (90), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 25/120 (20%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            PHA   V D +   +LA FG +     MFS G+  S+A++ S+  L       G+GL  
Sbjct: 41  GPHAFGIVPDSVGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92

Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
             G+ A A                 SV   G L  ++ A+  KML   L IE     ++F
Sbjct: 93  VLGTIAIAVSLGFVFERWVHISWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152


>gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
 gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
          Length = 265

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122
           N DGS    CGN  RCV  +   + +     TF +  G++  +      + G +  ++G 
Sbjct: 60  NADGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGA 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180
           P          +  + +  +    G + HL       +  G PH + FV+  + +  +  
Sbjct: 120 P----------KRLESLQLE----GQIWHL-------LDTGVPHLVHFVDHPNKIPTHKT 158

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                L A+   F   VN   A +    ++ L T+ERGV  +T ACG+   A+V A    
Sbjct: 159 PQMQTLRAR---FDANVNF--AYIQDPRTIKLATYERGVEDITLACGTGM-AAVFACAYY 212

Query: 240 HKTNRAVSVKMLGGGLLIEWH 260
              +   +V +   G  + W+
Sbjct: 213 QHNHNPQAVLIPPSGEALNWY 233


>gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 326

 Score = 39.3 bits (90), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 42/188 (22%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGI-----LVAKENRDG 114
           F+   N DGS  + CGNG R    +L +         F+  T  GI     +   +  D 
Sbjct: 85  FMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSPKFSIGTRAGIKRLTVVNPAQTTDS 144

Query: 115 S--ISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFV 171
           S  I+VDMG+  +      + +S    DR RF  +G            + +GNPH    +
Sbjct: 145 SARIAVDMGQVGI------IGQSVAAFDRQRFAGVG------------IDVGNPHLACVI 186

Query: 172 ED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWERGVG 220
            D  D    +L      +     F  G N+ +  +T L + D         +R  ERG G
Sbjct: 187 PDLDDAGLRELPLHLKPVLDEEFFPHGANVEV--LTPLRADDSRDGDGTVSMRVHERGSG 244

Query: 221 LTAACGSA 228
            T +CG+ 
Sbjct: 245 ETRSCGTG 252


>gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 262

 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 112/289 (38%), Gaps = 44/289 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I D           
Sbjct: 3   LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKDNH--------- 53

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE--- 122
            +   G E   CGN  R     L  R   K F+ + I  I  + E+   ++ V  G+   
Sbjct: 54  -LQMMGGEF--CGNASRSFASLLAFR--DKDFSKQKIYKITCSGEDEILAVDVREGQTEN 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDLYHYD 179
             L    +P  +S +++  D + +G V             G  H IF V   ++D +   
Sbjct: 109 SFLAKIKMPKFKSLEELKIDNYKLGLVKF----------SGIDHFIFDVAENKEDNFEKV 158

Query: 180 LASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           + S  N L+         MF +  NLS+     ++ ++   +E       +C S   A  
Sbjct: 159 IDSVKNYLSDKDFSAFGIMFFDRQNLSMKPYVYVKDIESGIFEN------SCASGTTALG 212

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                    +RA  ++    G L    +N+ +++ G  +   EGK+ I+
Sbjct: 213 YYLKKYKNLDRAKIIQ--PNGWLEYIIENDEIYIDGSVEIVAEGKVYIQ 259


>gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
 gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
          Length = 258

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 44/288 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I D           
Sbjct: 3   LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKDNH--------- 53

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE--- 122
            +   G E   CGN  R     L  R   K+F+ + I  I  + E+   ++ V  G+   
Sbjct: 54  -LQMMGGEF--CGNASRAFASLLAFR--DKTFSKQKIYKITCSGEDEVLAVDVREGQTEN 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---EDDLYHYD 179
             L    +P  +S +++  D + +G V             G  H IF +   ++D +   
Sbjct: 109 SFLAKIKMPKFKSLEELKIDNYKLGLVKF----------SGIGHFIFDIAKNKEDNFEKV 158

Query: 180 LASFGNLLAKHP------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           + S  N L+         MF +  NLS+     ++ ++   +E       +C S   A  
Sbjct: 159 IDSVKNYLSDKDFSAFGIMFFDRENLSMKPYVYVKEVESGIFEN------SCASGTTALG 212

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                    +RA  ++    G L    +N+ +++ G  +   EGK+ I
Sbjct: 213 YYLKKYKNLDRAKIIQ--PNGWLEYIIENDEIYIDGSVEIVAEGKVYI 258


>gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
 gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
          Length = 289

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 31/182 (17%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111
           A+ D F+   N DGS  + CGNG+R    +L +     +  F   +  G    ++   + 
Sbjct: 68  AAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPVVVHGYDA 127

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
             G ++V MG       +  L  S   +D   F               + +GNPH +  V
Sbjct: 128 THGDVTVAMG------TIKDLGTSSATIDGRVF-----------AGVGIDVGNPH-LACV 169

Query: 172 EDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           ++ +    L+S    L+  P      F  GVN+ I        + +R  ERGVG T +CG
Sbjct: 170 DEHVTPEVLSSLD--LSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCG 227

Query: 227 SA 228
           + 
Sbjct: 228 TG 229


>gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
 gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
          Length = 124

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223
           PH + FV++  +   L +      +H       N++IA + + E++ L+T+ERGV   T 
Sbjct: 2   PHLVGFVKNKEWLNSLNTLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTL 58

Query: 224 ACGSAACASVVASGCLHKTNRAVSV 248
           ACG+   A  +A+   + T +  ++
Sbjct: 59  ACGTGMAAVFIAARIFYNTPKKAAL 83


>gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN]
 gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
 gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae]
 gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae]
 gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
          Length = 296

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 23/174 (13%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK----ENRDG 114
           D ++   N DGS  Q CGNG+R    +L +        F   ++ G  +      +  + 
Sbjct: 71  DWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRLVNVHHVDELNA 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG+  L     P   +F      R   G            V +GNPH +  ++  
Sbjct: 131 DVTVDMGKANLLGSGGP---AFAVTVGGRRFSG----------VAVDVGNPH-LACMDPQ 176

Query: 175 LYHYDLASFGNLLAKH---PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           L   +LA+       H     F +GVN+ +        + +R  ERGVG T +C
Sbjct: 177 LSLEELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVGETRSC 230


>gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 307

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 76/206 (36%), Gaps = 54/206 (26%)

Query: 61  DAFIRII-----------NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
           D FIR +           N DGS+ + CGNG+R  V  L     R+    +   G  +  
Sbjct: 52  DGFIRAVQRDGSWFMDYRNADGSKAEMCGNGVRVFVDHL-----RREGLVDLPLGATLDV 106

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG----PVNHLF-LRNPFV----- 159
             R G             ++ PL          R  +G    P +    +R P V     
Sbjct: 107 VTRGGIK-----------RVTPLEEDGGHGAHYRVDMGAAASPASETIEVRIPGVDGVLG 155

Query: 160 ---VSMGNPHAIFFVEDD-------LYHYDLASF--GNLLAKHPMFSEGVNLSI-----A 202
              V M NPH +  + D+       L   D++    G   +  P  + G NL +      
Sbjct: 156 GLWVDMPNPHTVVELADEETLRGVTLPTIDVSRLAPGQRPSYAPEPASGTNLELVVDLTT 215

Query: 203 RVTSLESLDLRTWERGVGLTAACGSA 228
             +SL  + +R  ERGVG T ACG+ 
Sbjct: 216 PGSSLGHIAMRVLERGVGETQACGTG 241


>gi|187922609|ref|YP_001894251.1| sodium/hydrogen exchanger [Burkholderia phytofirmans PsJN]
 gi|187713803|gb|ACD15027.1| sodium/hydrogen exchanger [Burkholderia phytofirmans PsJN]
          Length = 667

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            PHA   + D     +LA FG +     MFS G+  S+A++ S+  L       G+GL  
Sbjct: 41  GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92

Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
             G+ A A                 SV   G L  ++ A+  KML   L IE     ++F
Sbjct: 93  VIGTIAVAVSLGFVLERWVHIRWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152


>gi|91781730|ref|YP_556936.1| putative glutathione-regulated potassium efflux system protein
           [Burkholderia xenovorans LB400]
 gi|91685684|gb|ABE28884.1| Kef-type potassium/proton antiporter, CPA2 family [Burkholderia
           xenovorans LB400]
          Length = 666

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            PHA   + D     +LA FG +     MFS G+  S+A++ S+  L       G+GL  
Sbjct: 41  GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92

Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
             G+ A A                 SV   G L  ++ A+  KML   L IE     ++F
Sbjct: 93  VLGTIAVAVTLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152


>gi|296161546|ref|ZP_06844351.1| sodium/hydrogen exchanger [Burkholderia sp. Ch1-1]
 gi|295888190|gb|EFG68003.1| sodium/hydrogen exchanger [Burkholderia sp. Ch1-1]
          Length = 666

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
            PHA   + D     +LA FG +     MFS G+  S+A++ S+  L       G+GL  
Sbjct: 41  GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAKLRSMRRLVF-----GLGLLQ 92

Query: 224 ACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
             G+ A A                 SV   G L  ++ A+  KML   L IE     ++F
Sbjct: 93  VLGTIAVAVTLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGRNIF 152


>gi|209521312|ref|ZP_03270029.1| sodium/hydrogen exchanger [Burkholderia sp. H160]
 gi|209498258|gb|EDZ98396.1| sodium/hydrogen exchanger [Burkholderia sp. H160]
          Length = 688

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 31/123 (25%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVG 220
            PHA   + D     +LA FG +     MFS G+  S+A+        LRT  R   G+G
Sbjct: 64  GPHAFGLIPDSAGAQNLAEFGVVFL---MFSIGLEFSLAK--------LRTMRRLVFGLG 112

Query: 221 LTAACGSAACA-----------------SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN 263
           L    G+ A A                 SV   G L  ++ A+  KML   L IE     
Sbjct: 113 LLQVIGTVAVAVSLGFVLERWVHITWQASVALGGALAMSSTAIVSKMLAERLEIETEHGR 172

Query: 264 HVF 266
           ++F
Sbjct: 173 NIF 175


>gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 65

 Score = 37.7 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 11/70 (15%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTH----FDQIMLIHDFQDAS 59
          + F+KM G+GN  +V+D  G   N+  T + I  L+   N H    FDQ++++    D  
Sbjct: 1  MQFSKMHGLGNDFVVVD--GVTQNVFFTPETIRRLA---NRHCGIGFDQLLIVEAPYDPE 55

Query: 60 VDAFIRIINC 69
          +D   RI NC
Sbjct: 56 LDFHYRIFNC 65


>gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 179

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 139 MDRDRFHIGPVNHLFLRNPFV--------VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           +D D   +       L  PF+           G PH + FV D+L  +DL+    L  K+
Sbjct: 35  IDNDFVEVALXAPKXLSEPFIEYGFEWSFYDTGVPHLVTFV-DNLSKFDLSVCSELRKKY 93

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249
                  N++ A +     L++RT+ERGV   T ACG+   AS        K N  + V 
Sbjct: 94  -----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNPCLKVN 148

Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272
                 L    D   ++  G+ K
Sbjct: 149 PKSKEDLWLKFDGETIYFKGKVK 171


>gi|255953555|ref|XP_002567530.1| Pc21g04840 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589241|emb|CAP95381.1| Pc21g04840 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2218

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 127 WKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           W+L   ARS +  + +DRF +   +H    NP  V   NP   +F+++D+ H+D A F N
Sbjct: 42  WELCTRARSGWSPIPKDRFSVEAFHH---PNPSKVGSFNPKGGYFLDEDIAHFD-APFFN 97

Query: 186 LLAKH 190
           L  + 
Sbjct: 98  LTVQE 102


>gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478]
          Length = 290

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 35/235 (14%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKEN 111
            + D ++   N DGS  Q CGNG+R    +L +    +R  F   ++ G     + + + 
Sbjct: 68  GAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRPVTVHSVDA 127

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP-FVVSMGNPH-AIF 169
            +  ++VDMG+                   +R   G       R P   V +GNPH A  
Sbjct: 128 SNADVTVDMGK------------------ANRIGTGTAVVGGRRFPGLAVDVGNPHLACL 169

Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GS 227
                +           ++  P  F +GVN+ +        + +R  ERGVG T +C   
Sbjct: 170 DPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGETRSCGTG 229

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-------VFMTGEAKKEW 275
              A+V A          ++V++ GG + +   D          +  TGE   EW
Sbjct: 230 TVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATSFLRGPSVLVATGEVSGEW 284


>gi|45658224|ref|YP_002310.1| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45601466|gb|AAS70947.1| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 287

 Score = 37.0 bits (84), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 193 FSEGVNLSIARV--TSLESLDLRTWERGVGLTAACGSAACAS 232
           FSEG+   I+RV   +L+ LD +TWE+ +  T  C    CA+
Sbjct: 71  FSEGIRNEISRVFGLNLKDLDFQTWEKSLSTTKRCLDVGCAA 112


>gi|294827850|ref|NP_711531.2| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385695|gb|AAN48549.2| 3-demethylubiquinone-9 3-O-methyltransferase [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 287

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 193 FSEGVNLSIARV--TSLESLDLRTWERGVGLTAACGSAACAS 232
           FSEG+   I+RV   +L+ LD +TWE+ +  T  C    CA+
Sbjct: 71  FSEGIRNEISRVFGLNLKDLDFQTWEKSLSTTKRCLDVGCAA 112


>gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 363

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG-VGLTAACGSAACAS 232
           + Y + LA++ +L    PM  E   +           DLR W++G  G+      AA   
Sbjct: 174 EFYQHLLAAYPSLSMHQPMKPETAAVPWRDAPD----DLRAWQQGKTGIPIV--DAAMRQ 227

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268
           ++A G +H   R V+   L   LLI+W      FM 
Sbjct: 228 LLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAWFMA 263


>gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
 gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
          Length = 45

 Score = 36.6 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           N  V V +LGG L+IEW+   H ++MTGEA   ++G
Sbjct: 6   NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDG 41


>gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
 gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
          Length = 472

 Score = 35.4 bits (80), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 183 FGNLLAKHPMFS--EGVNLSIARVTSLESLD-LRTWERG-VGLTAACGSAACASVVASGC 238
           + +LLA HP  S  + +    A V   ++ D LR W++G  G+      AA   ++A G 
Sbjct: 286 YQHLLAAHPSLSMHQPMKPETAAVPWRDAPDDLRAWQQGQTGIPIV--DAAMRQLLALGW 343

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           +H   R V+   L   LLI+W      FM        +G L    G W
Sbjct: 344 MHNRLRMVTAMFLSKNLLIDWRLGEAWFMAQLV----DGDLAANNGGW 387


>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 487

 Score = 35.4 bits (80), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 150 NHLFLRNPFVVSMGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205
           N L+  +P ++   +  A  ++ +    + Y + L ++  L   HP       L   R  
Sbjct: 255 NRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQHHPFIGWTDGLVWNRSE 314

Query: 206 SLESLDLRTWERG-VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264
           S     L+ W++G  G       AA   +  +G +H   R +S   L   LLI+W     
Sbjct: 315 S----QLKAWQQGQTGYPIV--DAAMRQMNETGWMHNRLRMISASFLVKDLLIDWRQGER 368

Query: 265 VFMTGEAKKEWEGKLDIKTGKW 286
            FM+       +G L    G W
Sbjct: 369 YFMSQLV----DGDLAANNGGW 386


Searching..................................................done


Results from round 2




>gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 296

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV
Sbjct: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM
Sbjct: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL
Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH
Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296
           KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY
Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296


>gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200]
          Length = 275

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+  LIP      K     + +      FL      SMGNPH +  VE D+    +A
Sbjct: 121 VPILEPSLIPFKA---KKPEKTYLLQTAQQTFLCG--AASMGNPHCVLDVE-DVASAAVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4]
 gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4]
          Length = 279

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 6/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ S+  + ++     T  G +  +  RDGS++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP      +             +       VSMGNPH +  V DD+ + D+ 
Sbjct: 121 IPVLEPSRIPFNAKKAEKTY-LLQADMPEGMQTFLCGAVSMGNPHCVLEV-DDVANADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+LL KH  F +GVN+   +V     + LR +ERG   T ACGS ACA+V       K
Sbjct: 179 RIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGK 238

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             R V V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 239 LARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQIQ 278


>gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 276

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +   +  T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PI +   IP+         ++ +I       L      SMGNPH +  V D++   D+
Sbjct: 121 GVPIFEPNKIPMKAK----QAEKTYILRAGDQTLFCGAA-SMGNPHCVTVV-DNVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W  +   +FMTG A   ++G+ ++
Sbjct: 235 LLDENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276


>gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
 gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
          Length = 276

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +   +  T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PI +   IP+         ++ +I       L      SMGNPH +  V D++   D+
Sbjct: 121 GGPIFEPSKIPMKAK----QAEKTYILRAGEQTLFCGAA-SMGNPHCVTVV-DNVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   +FMTG A   ++G+ 
Sbjct: 235 LLDENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010]
 gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010]
          Length = 281

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +VID       +TS  I  LS        DQ++L+   Q A  D  
Sbjct: 1   MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +    + +   ET  G++      DGS++VDMG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +PI +   IP      + +    ++  ++    +    +SMGNPHA+  V DD+    + 
Sbjct: 121 KPIFEPAKIPF-----QAEEATTYMLTIDEHGKKEIAALSMGNPHAVMLV-DDVTVASVL 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F E VN    ++   +S+ LR +ERG G T+ACG+ ACA+VV+      
Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            N  V+V + GG L I W D +  V+MTG A+  ++G++
Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273


>gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 274

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS   +   FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V K + D  ++V+MGE
Sbjct: 61  RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP    F  +  ++ +I       +     VSMGNPH +  V DD+    + +
Sbjct: 121 PIFEPSKIP----FKAVKAEKTYIMRAAEHTILCG-AVSMGNPHCVLQV-DDVETALVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 IGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W   +N +FMTG A   ++G + +
Sbjct: 235 DENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDGFIHL 274


>gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 276

 Score =  365 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   + D +  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +   +  T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PI D   IP    F     ++ +I       +      SMGNPH +  V DD+   D+
Sbjct: 121 GVPIFDPAKIP----FRANQAEKTYILRAGDQTVFCGAA-SMGNPHCVTVV-DDVLTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN+   +V S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 ETLGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
             +  V+V + GG L I W+ N  ++FMTG     ++G++
Sbjct: 235 LLDEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274


>gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
 gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
          Length = 279

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+   + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 1   MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DGSEV  CGNG RC  RF  L     +K  T  T  G ++     +  + 
Sbjct: 61  QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   IP +A  F+K    R  I  V         VVSMGNPH +  V DD+ 
Sbjct: 121 VNMGEPIWEPAKIPFVANKFEKNYILRTDIQTV------LCGVVSMGNPHCVVQV-DDIK 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++   G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V   
Sbjct: 174 TANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW      +FMTGEA   ++G + +
Sbjct: 234 IMQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDGVIRL 279


>gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
 gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
          Length = 275

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+LD   IP      K     + +      FL      SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLDPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678]
          Length = 275

 Score =  365 bits (937), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+   IP      K     + +      FL      SMGNPH +  VE D+    +A
Sbjct: 121 VPILEPSQIPFKA---KKPEKTYLLQTPMQTFLCG--AASMGNPHCVLDVE-DVASASVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L KH  F  GVN+   +V     + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             + V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
 gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
          Length = 283

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F+KM G+GN  +VID         +  I A +       FDQ++L+       VD 
Sbjct: 2   TTLKFSKMHGLGNDFMVIDGTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F++      +++   ET RGI+    N +G I+V+M
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P    + +P      +   ++ +I  VN L      ++SMGNPHA+  VED      +
Sbjct: 122 GQPQFAPQDVPFVLRSGEQAGEKSYI-VVNELDSAQMSLLSMGNPHAVMLVEDT-ASAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  L  HP F   VN+   +V     + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 180 AEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVVSGVRWG 239

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                  V V + GG L I W +   V+MTG A   +EG+L
Sbjct: 240 LLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280


>gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 276

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +   + +  L+       FDQ++++        D 
Sbjct: 1   MLIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +K+   ET +GI+    N+DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP      +       +  V +        VSMGNPH +  V DD+    +
Sbjct: 121 GAPRLAPADIPFVAETQEAIY-PIEVNGVMYEI----SAVSMGNPHGVLVV-DDVNKAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  HP F E  N+   +V       LR +ERG G T ACG+ ACA+VVA     
Sbjct: 175 HKLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +R V +K+ GG L I W    H V MTG A + ++G++ I
Sbjct: 235 LLDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276


>gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7]
 gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7]
          Length = 275

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+LD   IP      K     + +      FL      SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLDPSQIPFKA---KKAEKTYLLQTSQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
 gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
          Length = 276

 Score =  364 bits (935), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F+KM G+GN  +VID    H ++T + I  L        FDQ++L+     +  D 
Sbjct: 1   MKLKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    + +   ET +G++V +   DG+++VDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP   + + +       G        +  VVSMGNPHA+  V  D+  + +
Sbjct: 121 GVPRFKPVEIPFVAAEEALTYPLDAAGRQ-----CDISVVSMGNPHAVQVVA-DVDTFPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  HP F E VN    ++ S E + LR +ERG G T ACG+ ACA+VVA     
Sbjct: 175 AELGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             +  V V   GG L I W      V MTG A   + G++ +
Sbjct: 235 LLDHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276


>gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2]
          Length = 276

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 146/282 (51%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             V F+KM G+GN  +VID    +   + D I  L+  +    FDQ++++    D   D 
Sbjct: 1   MQVQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IPL  +     ++  +I  VN   L     VSMGNPH +  VE D+    +
Sbjct: 121 GKPEFEPAKIPLKANK----QENTYILRVNDKTLFYG-AVSMGNPHCVMEVE-DVDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ ++  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 KEIGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K ++ V V + GG L I W   ++V  MTG A   ++G +++
Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276


>gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9]
 gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum
           SS9]
          Length = 276

 Score =  364 bits (935), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   +  AI  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +      T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F     ++ +I  V    +     VSMGNPH +  V DDL   D+
Sbjct: 121 GVPEFEPSKIP----FRAKQTEKTYIMRVGERTIFCGT-VSMGNPHCVTVV-DDLELTDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 DTLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   ++MTG     ++G++
Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
 gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
          Length = 276

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D 
Sbjct: 1   MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+       +   +  T  G L     +DG ++V+M
Sbjct: 61  HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IPL  S  ++    + I    H        VSMGNPH +  V DD+    +
Sbjct: 121 GHPNFEPSKIPLKASKREL---TYIIRAEEHTV--FSGAVSMGNPHCVIEV-DDITTAQV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V      
Sbjct: 175 DVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQS 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K + AV V + GG L I W    H V MTG A+  ++G++ +
Sbjct: 235 KLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
          Length = 276

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 146/282 (51%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             V F+KM G+GN  +VID    +   + + I  L+  +    FDQ++++    D   D 
Sbjct: 1   MQVQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IPL  +     ++  +I  V    L      SMGNPH +  V DD+   ++
Sbjct: 121 GKPEFEPANIPLKANK----QENTYILRVGESTLFIGSA-SMGNPHCVMEV-DDVDTANV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+ KH  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 AEIGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K  + V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 235 KLGKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1]
 gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1]
          Length = 275

 Score =  363 bits (933), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP      K     + +      FL      SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLEPSQIPFKA---KKAEKTYLLQTPQQTFLCG--AASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
 gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
          Length = 276

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN  +VID       +T+  +  ++        DQ++L+      ++D 
Sbjct: 1   MRIAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  R    + +   +T  GI+  +   DG I+VDM
Sbjct: 61  GYRIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP      K+D +  +             VVS+GNPH +  V   +    +
Sbjct: 121 GVPRFAPQQIPF-----KVDHEADYYSLELDGQQLEIGVVSLGNPHCVLRVP-AVDAAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+VV      
Sbjct: 175 AHWGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIGKRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W  +   V+M+G A+  +EG  D+
Sbjct: 235 WLSGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276


>gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
 gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
          Length = 278

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           S ++ F KM G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D
Sbjct: 2   SILIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++V+
Sbjct: 62  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L+   IP      K+++    +             VSMGNPH +  VE D+   D
Sbjct: 122 MGIPALEPGKIPFTAK--KVEKTYLLMAS---SGTYLCGAVSMGNPHCVIEVE-DVAATD 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 176 VDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGILQ 235

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            K +R V V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 236 GKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276


>gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893]
 gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893]
          Length = 327

 Score =  362 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 97/294 (32%), Positives = 143/294 (48%), Gaps = 10/294 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           Q  M++F KM G+GN  +V+D       +  + I  L+       FDQ++++       V
Sbjct: 14  QGPMLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDV 73

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    +K    +T +G++  +  R G ++V
Sbjct: 74  DFRYRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+   IP A    K D     +G            VSMGNPH +  V DD+   
Sbjct: 134 DMGVPELNPPAIPFAADRRK-DVYTVELGG----DTVELSAVSMGNPHGVLLV-DDVDTA 187

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G  L  HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA   
Sbjct: 188 PVGEYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVAGCL 247

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
               +  V V++ GG L+IEW      V M G     +EG+L +   +  ++ +
Sbjct: 248 RGLLDNRVDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPADQPPRRRK 301


>gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
 gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
          Length = 276

 Score =  362 bits (931), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D 
Sbjct: 1   MQIQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLADRNTGVGFDQLLVVEPPYDPESDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N D SEV  CGNG RC  RF+       +      T  G +V K + D  ++V+M
Sbjct: 61  HYRIFNADSSEVAQCGNGARCFARFVRMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPI     IP   + +    ++ +I  V    L     VSMGNPH +  V D++  +D+
Sbjct: 121 GEPIWAPAKIPFRANAE----EKTYILRVEDTTL-FVGAVSMGNPHCVTVV-DNVDTFDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F E VN    ++ S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 EGLGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGIQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             + +V+V + GG L I W    H ++MTG A   ++G++ +
Sbjct: 235 LLDESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276


>gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
 gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
          Length = 308

 Score =  362 bits (930), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 141/285 (49%), Gaps = 10/285 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           Q  ++ F KM G+GN  +V+D       +  D I  L+       FDQ++++       V
Sbjct: 8   QGPVLRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDV 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    ++    +T +G++  K  RDG ++V
Sbjct: 68  DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P L+   IP A    K        G    L       +SMGNPH +  V D++   
Sbjct: 128 NMGVPELNPPAIPFAADQRKDVYTVDVNGQTVEL-----SAISMGNPHGVLVV-DNVDTA 181

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + S G  L KHP F    N+   +V       LR +ERG G T ACGS ACA+VVA   
Sbjct: 182 PVESLGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVAGCL 241

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
               +  V V++ GG L+IEW  ++  V M G A   +EG+L + 
Sbjct: 242 RGLLDSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286


>gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 276

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDPHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA  VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
 gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
          Length = 276

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +      T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F     ++ +I  V    +    VVSMGNPH +  V DDL    +
Sbjct: 121 GVPEFEPSKIP----FRAKQTEKTYIMRVGERTIFCG-VVSMGNPHCVTVV-DDLDLTGV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 ETLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   ++MTG     ++G++
Sbjct: 235 LLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 274

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 137/281 (48%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T  G ++     DG I ++MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTSIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  V V + GG L+IEW      +FMTG+A   ++G + +
Sbjct: 234 LDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274


>gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 274

 Score =  362 bits (929), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  LS       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  V DD+    + 
Sbjct: 121 PIWEPSQVPFTANKFEKNYILRTELQTV------LCGVVSMGNPHCVLQV-DDVKTAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+S  +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL 274


>gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
 gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
          Length = 274

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P+ +   IP  A  F+K    R  +  V          VSMGNPH +  VE D+   ++ 
Sbjct: 121 PVWEPNKIPFIANKFEKNYILRTTVQTV------LCGAVSMGNPHCVVQVE-DIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V + + + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG A   ++G + +
Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274


>gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
 gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
          Length = 277

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 10/283 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +VID+      + ++ I  L+       FDQ++L+   +D  +D 
Sbjct: 1   MLLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV++CGNG RC  RF+       ++    ET  G L  +   D  I VDM
Sbjct: 61  RYRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    +++P     D       H   V+     +   VSMGNPHA+  V DD+    +
Sbjct: 121 GVPRFAPEVVPFDAPADA----PAHCLEVDGE-TWDIGAVSMGNPHAVLRV-DDVAQAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+ +HP F  GVN+   +V S     LR +ERG G T ACG+ ACA+V       
Sbjct: 175 ARLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAHGIRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
                V V + GG L + W   +  + MTG A   +EG++ + 
Sbjct: 235 WLESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277


>gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 276

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D 
Sbjct: 1   MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+       +   +  T  G L     +DG ++V+M
Sbjct: 61  HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IPL  S  ++    + I    H        VSMGNPH +  V DD+    +
Sbjct: 121 GHPNFEPSKIPLKASKREL---TYIIRTQEHTV--FSGAVSMGNPHCVLEV-DDVTTAQV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +
Sbjct: 175 DILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQN 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K +  V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 235 KLSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
 gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
          Length = 283

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++      D +T+             FDQ++L+      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP     D+++    H+  V  L       V+MGNPHA+  VE D+    +
Sbjct: 122 GKPRFTSSEIPFVPVPDEVEDALTHMVMV-GLETVQVSCVNMGNPHAVIVVE-DVQTAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 AHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGVRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  V V + GG L I W     V MTG  +  +EG+L 
Sbjct: 240 LLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGELQ 281


>gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999]
          Length = 276

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            +V+F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D   D 
Sbjct: 1   MLVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+   +   +   +  T  G ++    +DG ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P+     +   + + I   +  F      VS+GNPH +  V DD+  YD+
Sbjct: 121 GRPRFAPDDVPMKA---QKQENTYIIREADQTFFCG--AVSLGNPHCVMVV-DDIDTYDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  H  F + VN+   ++    ++ LR +ERGVG T ACGS ACA+V       
Sbjct: 175 LGVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           K    V+V + GG L I W  ++H + MTG A+  ++GK+
Sbjct: 235 KLGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274


>gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
 gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
          Length = 281

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 141/282 (50%), Gaps = 12/282 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID       ++ D +  ++        DQ++L+   +  S D   RI
Sbjct: 5   FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  +        S   ET+ G +  +      + VDMG 
Sbjct: 65  YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   +P      + D +  H        L +   VSMGNPHA+ +V D++    +A 
Sbjct: 125 PRFDPSALPF-----EADAEAAHYALDTAGQLLDIGAVSMGNPHAVLWV-DEIQEAPVAE 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN   A+  S   + LR +ERG G T ACG+ ACA+V       K 
Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
           +R V+V + GG L I W D++  + MTG+A   +EG +D+ +
Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280


>gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
 gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
          Length = 274

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + +    H  L    VVSMGNPH +  V D++    +  
Sbjct: 121 PNFEPQQVPFRAAKPE---KTYILRAAEHTVLCG--VVSMGNPHCVLQV-DNVDTAPVEE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
 gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
          Length = 274

 Score =  361 bits (927), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D        + D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  L     +K     T +G +V   N D ++ V+MGE
Sbjct: 61  RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  I  V         VVSMGNPH +  VE D+   ++ 
Sbjct: 121 PIWEPAKVPFIANKFEKNYILRTDIQTV------LCGVVSMGNPHCVLQVE-DVKTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F    N+   +V + + + LR +ERG G T ACG+ ACA+V        
Sbjct: 174 QLGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  V V++ GG L+IEW      ++MTG+A   ++G + +
Sbjct: 234 LDNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274


>gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15]
          Length = 304

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 10/285 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           Q  M+ F KM G+GN  +V+D       +  + I  L+  +    FDQ++++       V
Sbjct: 8   QGPMLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDV 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    +K    +T +G++  +  R+G + V
Sbjct: 68  DFRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P  +   IP A    K        G    L       +SMGNPH +  VE D+   
Sbjct: 128 NMGVPEFNPPAIPFAADRRKDVYTVDVDGQTVEL-----SALSMGNPHGVLLVE-DVDQA 181

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G  L +HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA   
Sbjct: 182 PVETLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVAGCL 241

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
               +  V V++ GG L+IEW  +   V M G A   +EG+L + 
Sbjct: 242 RGLLDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286


>gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
 gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
          Length = 274

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    +D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T  G +V     D ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD++  ++A
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCGAVSMGNPHCVVQV-DDIHTANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V + + + LR  ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG LLIEW    H ++MTG A   ++G + +
Sbjct: 234 LDNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDGVIYL 274


>gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
 gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
          Length = 276

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D       ++ + I  ++        DQ++L+   Q    D   
Sbjct: 3   LKFTKMHGAGNDFVVLDGVRQSVALSPEQIRYIADRHFGIGCDQVLLVEKTQRDEADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++  +   DG I+V+MG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMGL 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP      ++ +    +G  +        VVSMGNPHA+  V DD+    +A+
Sbjct: 123 PIFDPAQIPFVSDSTEVIQ-PLQVGNESVQIT----VVSMGNPHAVQVV-DDVETAPVAT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN+   +V   E + LR +ERG G T +CG+ ACA+VVA       
Sbjct: 177 QGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W  + + V MTG A   +EG++++
Sbjct: 237 DNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276


>gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
 gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
          Length = 278

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       ++     T  G +V     D  +SV+MGE
Sbjct: 65  RIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP    F  +  ++ +I       +    VVSMGNPH +  V DD+   ++  
Sbjct: 125 PNFEPQAIP----FKAIKAEKTYILRAAEHTVLCG-VVSMGNPHCVLQV-DDVSAANVEL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 238

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      ++MTG A   ++G + +
Sbjct: 239 DEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDGFIHL 278


>gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 274

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 138/279 (49%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K+    T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  VE D+   ++ 
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCSAVSMGNPHCVVQVE-DIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +  V V + GG L IEW    H ++MTG A   ++G +
Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272


>gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 274

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 137/279 (49%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  VE D+   ++ 
Sbjct: 121 PIWEPNKIPFTANKFEKNYILRTEIQTV------LCSAVSMGNPHCVVQVE-DIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +  V V + GG L IEW    H ++MTG A   ++G +
Sbjct: 234 LDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272


>gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
 gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
          Length = 276

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D 
Sbjct: 1   MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+       +   +  T  G L     +DG ++V+M
Sbjct: 61  HYRIFNADGHEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IPL  +  ++    + I    H        VSMGNPH +  V DD+    +
Sbjct: 121 GHPNFEPSKIPLKATKREL---TYIIRAEEHTV--FSGAVSMGNPHCVMEV-DDIETAQV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ++ G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +
Sbjct: 175 STLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQN 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K    V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 235 KLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305]
 gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305]
          Length = 274

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTSLQTV------LCGVVSMGNPHCVLQVE-DIQTAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDGFVKL 274


>gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
 gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
          Length = 283

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++  G   D +T+             FDQ++L+      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP     D+ D    H+  V  L       V+MGNPHA+  VE D+    +
Sbjct: 122 GKPRFTSSEIPFVPVPDEADDALTHMVMV-GLETVQVSCVNMGNPHAVIVVE-DVQTAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VV+   L 
Sbjct: 180 AHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGVRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  V V + GG L I W     V MTG  +  +EG+L 
Sbjct: 240 LLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGELQ 281


>gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017]
          Length = 275

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
 gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
          Length = 274

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F     ++ +I       +    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFDPQSVP----FRATKAEKTYIFRAAEQTVLCG-VVSMGNPHCVLQV-DDVAVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V++ GG LLI W    H ++MTG A   ++G + +
Sbjct: 235 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
 gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
          Length = 276

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F+KM G+GN  +VID       +T + I  L+        DQ++L+   +  +VD 
Sbjct: 1   MRIRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDGSEV++CGNG RC   F+  R    ++    ET  GI+  +   D  +SVDM
Sbjct: 61  RYRIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP       +       G V      +   VSMGNPHA+  V DD+    +
Sbjct: 121 GVPRLLPEKIPFVADQQAVTYPLDVAGQV-----CSISAVSMGNPHAVMLV-DDVKSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP F   VN    +V S + ++LR +ERG G T ACG+ ACA+VV      
Sbjct: 175 GQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             N  V V + GG L I W    H V MTG A   + G++ +
Sbjct: 235 LLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276


>gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 278

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVD 61
             + F+KM G+GN  +VID      +++ D +  L+        DQ++L+    D A+ D
Sbjct: 1   MRIQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG+EV+ CGNG RC   F+  R    +     ET  GI+  +   DG ++VD
Sbjct: 61  FRYRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP       M      +    +        VSMGNPHA+  V D++    
Sbjct: 121 MGPPRLKPWQIPFEAES-AMTSYPLEVEGETYEI----GAVSMGNPHAVLRV-DNVQTAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G L+  HP F   VN+   +V S   + LR +ERGVG T ACG+ ACA+VV+    
Sbjct: 175 VARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVSGRIQ 234

Query: 240 HKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
              +  V+V + GG L+I W   +   V MTG A + + G +DI
Sbjct: 235 GLLDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278


>gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9]
 gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9]
          Length = 278

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 146/284 (51%), Gaps = 12/284 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN   V+D       +T + I  L        FDQ++L+   QDA  D 
Sbjct: 1   MKLKFTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC  RF+       R+    ET RG++V +   DG ++VDM
Sbjct: 61  SYRIFNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP   + D +  +    G +  +      VVSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFRPADIPFVAAEDAVIHELEVAGQILGV-----TVVSMGNPHAVQVV-DDVDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +FG L+  H  F   VN    ++ S  ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 175 TAFGPLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRG 234

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               +  V+V+  GG L I W  + H V+MTG A   +EG++ +
Sbjct: 235 LLDADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278


>gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
 gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
          Length = 274

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIQRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G ++     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGTVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDGFITL 274


>gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 274

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + +P    F     ++ +I       +    VVSMGNPH +  V DD+   ++  
Sbjct: 121 PVFEPQQVP----FRAAKPEKTYILRAEERTVFCG-VVSMGNPHCVLQV-DDVLTAEVEV 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   ++ S ES+ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 276

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 147/282 (52%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             V F+KM G+GN  +VID    +   + + I  L+       FDQ++++    D   D 
Sbjct: 1   MQVQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IPL  +     ++  +I  V    L      SMGNPH +  V DD+   ++
Sbjct: 121 GKPEFEPANIPLKANK----QENTYILRVGESTLFIGAA-SMGNPHCVMEV-DDVDTANV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+ KH  FSEGVN+   ++ +   + LR +ERG G T ACGS ACA+V       
Sbjct: 175 AEIGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K ++ V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 235 KLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
 gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
          Length = 275

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTATVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
 gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
          Length = 288

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T     AL+        DQI+++       VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDM
Sbjct: 61  RYRIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P L+   +P             D  +   VN         VSMGNPHA+  V DD+ +
Sbjct: 121 GAPELEPARVPFRAQGLPTHAEGADALYGLEVNGR-TEWISAVSMGNPHAVQVV-DDVEN 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F   VN    +V    ++ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
                +  V V   GG L I W      V MTG A   +EG +D+  
Sbjct: 239 RRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDLAA 285


>gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
 gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
          Length = 276

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D 
Sbjct: 1   MLVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+       +   T  T  G L     +DG ++V+M
Sbjct: 61  HYRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IPL  +  ++    + I    H        VSMGNPH +  V DD+    +
Sbjct: 121 GHPNFEPSKIPLKATKREL---TYIIRTEEHTV--FSGAVSMGNPHCVLEV-DDITTAQV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +
Sbjct: 175 DILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQN 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K    V V + GG L I W+   H V MTG A+  ++G++ +
Sbjct: 235 KLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276


>gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
 gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
          Length = 274

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     ++ +I  V    +    VVSMGNPH +  VE+ +    + +
Sbjct: 121 PNFEPQQVP----FRAAKSEKTYILRVAERTVMCG-VVSMGNPHCVIQVEN-VDTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++ +  ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V+V++ GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDGFIHL 274


>gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20]
 gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
 gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
           Epimerase At 1.7a
 gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Ll-Azidap
 gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Dl-Azidap
 gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20]
 gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21]
 gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866]
 gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
          Length = 274

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
 gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
          Length = 274

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I   +   +    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVETAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F +  N+   +V   +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
 gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
          Length = 274

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F  +  +R +I       +    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFDPQTVP----FKAIKAERTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica]
          Length = 278

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MGE
Sbjct: 65  RIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP    F  +  ++ +I  V    +    VVSMGNPH +  V  D+   ++  
Sbjct: 125 PEFEPHNIP----FRALRAEKTYILRVIEKTV-LCSVVSMGNPHCVIQVA-DVETAEVEI 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 238

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W    N ++MTG A   ++G + +
Sbjct: 239 DSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278


>gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
 gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
          Length = 278

 Score =  359 bits (921), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 65  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F     ++ +I       +    VVSMGNPH +  V DD+   ++A 
Sbjct: 125 PNFDPQSVP----FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVLQV-DDVSVANVAL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E++ LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQELL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V++ GG LLI W    H ++MTG A   ++G + +
Sbjct: 239 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 278


>gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 278

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 4   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFH 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 64  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  D   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 124 EPNFDPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVQTAAVE 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 178 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 237

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 238 LAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278


>gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933]
 gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15]
 gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1]
 gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3]
 gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101]
 gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520]
 gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482]
 gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120]
 gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263]
 gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489]
 gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007]
 gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509]
 gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2]
 gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1]
 gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3]
 gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253]
 gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167]
 gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227]
 gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9]
          Length = 275

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
 gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
          Length = 274

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I   +   +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQV-DDVETAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++   +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGSL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895]
 gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895]
          Length = 275

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNIDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863]
          Length = 275

 Score =  358 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
 gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
          Length = 274

 Score =  358 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
 gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
          Length = 282

 Score =  358 bits (920), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++ + F KM G+GN  +V D      ++T + I  ++        DQ++++   Q    D
Sbjct: 6   TTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQHPEND 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV++CGNG RC  +F+  +    + +   ET+ G+L    +R G ++VD
Sbjct: 66  FRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQGDVTVD 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+L    IP       ++ D             +   +SMGNPHA+  V D++    
Sbjct: 126 MGVPVLTPAEIPFNADSQAVNYDLALADQ-----TISISAISMGNPHAVTLV-DNVDTAP 179

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +  +G L+  H  F   VN     V S ES+ LR +ERGVG T ACG+ ACA+VVA    
Sbjct: 180 IEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVVAGHLQ 239

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              +  V+  + GG L IEW    H V MTG A   ++G++ I
Sbjct: 240 GLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282


>gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905]
          Length = 274

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
 gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
          Length = 282

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 130/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 8   KMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 67

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MG
Sbjct: 68  YRIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMG 127

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  + + +P    F     +  ++  V    +     VSMGNPH +  VE  +    + 
Sbjct: 128 EPNFEPQQVP----FRANKAENLYLLRVAEQTVMLG-AVSMGNPHCVIQVES-VKTAQVE 181

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V        
Sbjct: 182 LLGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGV 241

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V + GG L I W      ++MTG A   ++G + +
Sbjct: 242 LAPKVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 282


>gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
 gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
          Length = 291

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 8/275 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D R     +T+ A  A++        DQI+L+   +  + D F+R
Sbjct: 4   RFLKMHGLGNDFVVLDARRDPLPLTTAAARAIADRHTGVGCDQIVLLEPPRHPAADLFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   +     R   T ET  G+L  +   DGS++VDMG   L
Sbjct: 64  ILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGPARL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA + D +        P     L++   V MGNPHA+FFV DD    DLA+ G 
Sbjct: 124 DWTQIPLAAAHDTLRV------PAGAGPLQDACCVGMGNPHAVFFV-DDAEAVDLATLGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F +  N+ +A+V + + + +R WERG G+T ACGS +CA++VA+     T RA
Sbjct: 177 VLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLTGRA 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +++ GG L IEWH + HV MTG     + G+L 
Sbjct: 237 AWIELDGGRLWIEWHGDGHVLMTGPVATAFTGELS 271


>gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 282

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 15/288 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDA 58
           M    ++F K  G+GN  ++ID R      IT + A+           D ++     ++ 
Sbjct: 1   MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN- 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDG 114
             D  +RI N DGSE + CGNG+RC+  FL         + ++   T+ G++  +   DG
Sbjct: 60  GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDG 119

Query: 115 SISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            I VDMG P L    IP  +A +  K+      +             VSMGNPH I FVE
Sbjct: 120 QIKVDMGLPRLLAGEIPTNIAAADQKVINQPLEVEGK----TWEVTCVSMGNPHCITFVE 175

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    L + G     HP F +  N    +V S + L +R WERG G+T ACG+ ACAS
Sbjct: 176 -DVAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACAS 234

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +VA+    +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 235 LVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282


>gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103]
 gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103]
 gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355]
          Length = 282

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 8   KMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFH 67

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MG
Sbjct: 68  YRIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMG 127

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  + + +P    F     +  ++  V    +     VSMGNPH +  VE       + 
Sbjct: 128 EPNFEPQQVP----FRANKAENLYLLRVAEQTVMFG-AVSMGNPHCVIQVEST-KTAQVE 181

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  H  F E VN+    + S E + LR +ERG G T ACGS ACA+V        
Sbjct: 182 LLGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGI 241

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W      ++MTG A   ++G + +
Sbjct: 242 LSQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 282


>gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 274

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I   +   +    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVDTAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
 gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
          Length = 278

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 8/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN  +V D      ++ +     L+        DQI+L+   +    D 
Sbjct: 1   MRLRFTKMQGLGNDFVVFDGVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +      T  G +      DG + VDM
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP +   +  D    +   +    L     +SMGNPHA+  V DD+    +
Sbjct: 121 GAPAFTPARIPFSVETETADA--TYPLEIEDRTL-TIGALSMGNPHAVLIV-DDVESAPV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G L+  HP F   VN    ++    ++ LR  ERG G T ACG+ ACA+VV+     
Sbjct: 177 ATLGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVVSGRRRG 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           + +  V V + GG L+IEW    H V+MTG A   +EG+++
Sbjct: 237 RLDERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277


>gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202]
 gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202]
          Length = 274

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTSLQTV------LCGVVSMGNPHCVLQVE-DIKTAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDGFVTL 274


>gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
 gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
          Length = 274

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE+ +    +  
Sbjct: 121 PNFEPQQVP----FRAVKPEKTYILRAAERTVLCG-VVSMGNPHCVLQVEN-VDSASVEE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDGFIHL 274


>gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 274

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFEPQSVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206]
 gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3]
 gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206]
          Length = 275

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073]
 gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1]
          Length = 275

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
 gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
          Length = 276

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             V F+KM G+GN  +VID    +   + + I+ L+       FDQ++++    D   D 
Sbjct: 1   MQVQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+       R      T  G +V    RDG I+V+M
Sbjct: 61  HYRIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPI +   IPL  +  +     + I   +H F      VSMGNPH +  V DD+   D+
Sbjct: 121 GEPIFEPAKIPLKANKQENI---YIIRENDHTFFCG--AVSMGNPHCVLLV-DDVETADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       
Sbjct: 175 EGIGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQK 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 235 KLNKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
          Length = 274

 Score =  358 bits (919), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 276

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G ++     D  ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I       L     VSMGNPH +  V DD    D+ + 
Sbjct: 124 EFEPNKIP----FKAKQTEKTYILRAEEKTLFCG-AVSMGNPHVVTVV-DDTQTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQELLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L I W      ++MTG A   ++G+L 
Sbjct: 238 EKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQLS 275


>gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74]
 gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70]
 gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671]
 gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71]
 gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71]
 gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6]
 gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218]
 gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227]
 gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304]
          Length = 274

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703]
          Length = 274

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFEPQSVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
 gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
          Length = 274

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +  +     + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFDPQTVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
 gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
          Length = 281

 Score =  357 bits (918), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 142/284 (50%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R        +  A+     +     D ++     Q+   D  
Sbjct: 1   MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQE-GTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ +FL        +  +   T+ G+++ +   DG + VDM
Sbjct: 60  MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119

Query: 121 GEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P L    IP  LA +  K+      I       L     VSMGNPH I FVE D    
Sbjct: 120 GMPQLSAAQIPTVLAEADQKVINTPIEIADK----LWEVTCVSMGNPHCITFVE-DADAI 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G L   H +F +  N    +V   + L +R WERG G T ACG+ ACASVVA   
Sbjct: 175 PLETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             K++R  +V++ GG L IEW + +  V+MTG A++ + GKL  
Sbjct: 235 TQKSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKLSP 278


>gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102]
 gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102]
          Length = 283

 Score =  357 bits (918), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++      D + +             FDQ +++      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+M
Sbjct: 62  RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP   +  + +    HI  V    +     V+MGNPHA+  V D++    +
Sbjct: 122 GKPRFMPSEIPFVPAHGETEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DNVETAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G+ +  H  F E VN+   ++    S+ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 180 DHWGSAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239

Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K    V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281


>gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60]
          Length = 274

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       R+     T  G +      D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP    F     ++ +I  V    +     VSMGNPH +  VE D+    +  
Sbjct: 121 PQFEPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DVSRAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      + MTG A   ++G + +
Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274


>gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 275

 Score =  357 bits (918), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB]
 gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB]
          Length = 274

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     +  ++  V    +     VSMGNPH +  VE  +    +  
Sbjct: 121 PNFEPQQVP----FRANKAENLYLLRVAEQTVMLG-AVSMGNPHCVIQVES-VKTAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      ++MTG A   ++G + +
Sbjct: 235 APNVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 274


>gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
 gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
          Length = 276

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  +VID    +  I  D I  L+       FDQ++++    D  +D 
Sbjct: 1   MLVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+       R      T  G +     +DG +SV+M
Sbjct: 61  HYRIFNSDGTEVEQCGNGARCFARFVRMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L+   IP    F    R+  +I       +     VSMGNPH +  V DD+    +
Sbjct: 121 GQPKLEPHTIP----FKAAKRENTYIFRAQDHTVFCG-AVSMGNPHCVVEV-DDITTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  H  F +  N+   ++ S E + LR WERG G T ACG+ ACA+VV      
Sbjct: 175 NVLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGILQK 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K    V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 235 KLAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276


>gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 276

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++DF+KM G+GN  +V+D        +++ I  L+       FDQ++L+    D  +D 
Sbjct: 1   MLIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF  L   + R      T RG +V +   +  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F     ++ ++       +     VSMGNPH +  V   +    +
Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-AVSMGNPHCVIEVPS-VADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+VV      
Sbjct: 175 ATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
 gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
          Length = 274

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F     ++ +I       +    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFDPQAVP----FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
 gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
          Length = 293

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+      +T + I  L+  +    FDQ++++       VD 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP         ++ +H+           +V +MGNPHA+  V DD+   D+
Sbjct: 121 GKPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKV-DDILTADV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 178 EKLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREG 237

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +    +  ++ GG LLI W     V MTG     +EG     
Sbjct: 238 WLDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVFSPD 281


>gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617]
          Length = 282

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           +    + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 4   LAEQKMQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPD 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + 
Sbjct: 64  LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVC 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP  + + IP    F     +  ++       +    VVSMGNPH +  V D++  
Sbjct: 124 VNMGEPNFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVLQV-DNVKT 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V    
Sbjct: 178 AAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGI 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                   V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 238 QQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 282


>gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101]
 gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101]
          Length = 274

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
 gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
          Length = 276

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F+KM G+GN  +V+D         ++ +  L        FDQ++L+    D  +D 
Sbjct: 1   MLIQFSKMHGLGNDFVVVDGVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEVQ CGNG RC  RF  L     +      T+ G +V +   +  ++V+M
Sbjct: 61  HYRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F  +  ++ ++  V    +    VVSMGNPH +  V   +    +
Sbjct: 121 GVPEFEPAKIP----FRALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEVPS-VKDAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L     F E +N+    V S   ++LR +ERG G T ACG+ ACA+VV      
Sbjct: 175 ETLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQE 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V V + GG L I W+   + V+MTG A+  ++G++++
Sbjct: 235 KLKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276


>gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846]
          Length = 274

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
 gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
          Length = 274

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VS+GNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSIGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
 gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
          Length = 274

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTATVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274


>gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 274

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I   +   +    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVETAKVDT 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           + +V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
 gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
          Length = 279

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 148/281 (52%), Gaps = 13/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  ++++         +    A+         D ++LI   +    D  +
Sbjct: 1   MEFTKMHGLGNDFVMVNGFNEDIADPNQLAEAICDRHFGVGADGLVLILPSKQEEADFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           RI N DGSE + CGN +RC  ++L  R   ++     ET+ GI+V +     ++  ++ V
Sbjct: 61  RIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEAVQV 120

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+   + DK+ +++  +    +        VSMGNPH + FV DD   
Sbjct: 121 DMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEIT----AVSMGNPHTVIFV-DDADD 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  + +HP F E  N+    V +   + +R WERG G+T ACG+ AC S VAS 
Sbjct: 176 FPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTVASI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               TN+ V V +LGG L IEW +++HV+MTG A++ + G+
Sbjct: 236 LNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAEEVFVGE 276


>gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 279

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 153/281 (54%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            ++F KM G+GN  ++ID          + AI+  +       DQ++L++  Q A  D  
Sbjct: 3   KINFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++I N DGSEV+ CGNG+RC  +++  R    +     ET+ GI+  K+  +  + VDMG
Sbjct: 61  MKIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGE-LVQVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P      IP+    D        +      +      VSMGNPHA+ F++++  ++ + 
Sbjct: 120 KPEFHPNKIPVDVEGDSAFDLMLEVSG----WHARINCVSMGNPHAVIFLDEEPKNFAVT 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G L+  HP+F +  N+  A V +   + +R WERG G T ACG+ ACA+ VA+     
Sbjct: 176 KYGPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMVKEF 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           TN+ V+V +LGG LLIEW  + HV+MTG A++ +EG + + 
Sbjct: 236 TNKKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKVP 276


>gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
 gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
          Length = 290

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+GIGN  +V+D      ++ +D I  L+       FDQ++L+       VD 
Sbjct: 13  MKLSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDF 72

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VR++  +    ++    +T RGI++ +   +G ++V+M
Sbjct: 73  RYRIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNM 132

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  +   +P     + M     ++  V    L    V SMGNPHA+  VE D+    +
Sbjct: 133 GEPRFEPAEVPFIADREAM----TYLLQVADQALE-ISVASMGNPHAVTVVE-DVDTAPV 186

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V +     
Sbjct: 187 ERLGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRG 246

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
                V V   GG L+I W      V+MTG A+  +EG +DI+
Sbjct: 247 LLQSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIE 289


>gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
 gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
          Length = 276

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D 
Sbjct: 1   MMMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+M
Sbjct: 61  HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    +
Sbjct: 121 GEPNFEPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVETAAV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V       
Sbjct: 175 ETLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V V++ GG L I W      ++MTG A   ++G + +
Sbjct: 235 LLAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 276


>gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16]
 gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16]
          Length = 288

 Score =  357 bits (916), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T     AL+        DQI+++       VD 
Sbjct: 1   MKLQFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDM
Sbjct: 61  RYRIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P L+   +P             D  +   VN        VVSMGNPHA+  V DD+ +
Sbjct: 121 GAPELEPARVPFRAEGLPTRAEGADTLYGLEVNGR-TEWISVVSMGNPHAVQVV-DDVEN 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  H  F   VN    +V    ++ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
                +  V V   GG L I W      V MTG A   +EG +D+  
Sbjct: 239 RRGLLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDLAA 285


>gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP    F     +  ++       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PGFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVIQV-DNVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274


>gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 369

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 148/294 (50%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S +  F K +G+GN  +++D R   +  IT + A+     +     D ++      +  
Sbjct: 81  ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTN-G 139

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        ++SFT  T  G++V +   DG +
Sbjct: 140 TDYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199

Query: 117 SVDMGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            VDMGEPIL    +P        D + + + +I  V      N   VSMGNPH + F  +
Sbjct: 200 KVDMGEPILKASDVPTRLRENKGDAVVKAKLNIDGV----TWNVTCVSMGNPHCVTFGSN 255

Query: 174 D-----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           +     +   +LA  G     H +F    N    +V S   L +R WERG G T ACG+ 
Sbjct: 256 ENQDLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTG 315

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           ACA+VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 316 ACATVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369


>gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
 gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       R+     T  G +    + D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   IP    F     ++ +I  V    +     VSMGNPH +  VE D+    +A 
Sbjct: 121 PQFDPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DVSQAQVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      + M G A   ++G + +
Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDGFIHL 274


>gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
 gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP    F     +  ++       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPQQIP----FRANKAENIYLMRAAEQTVMCG-VVSMGNPHCVLQV-DNVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQASL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +   +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
 gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +  +     + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PNFDPQTVPFRATKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
 gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++      D + +             FDQ +++      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+M
Sbjct: 62  RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP   +  + +    HI  V    +     V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPAHGENEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DDVETAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G ++  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 180 EHWGGVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239

Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K    V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281


>gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99]
 gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 5/274 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  +DG+++V+MG P+L+ 
Sbjct: 61  DGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVLEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      +           + +       VSMGNPH +  VE D+   D+   G LL
Sbjct: 121 SKIPFNAKRPEKTYLLQTDTAESKMQTFLCGAVSMGNPHCVLDVE-DIQAADVEGIGALL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K ++ V 
Sbjct: 180 TQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQGKLDKRVR 239

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 240 VDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQIQ 273


>gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
 gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
          Length = 276

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275


>gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
 gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933]
 gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024]
 gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B]
 gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412]
 gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W]
 gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110]
 gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82]
 gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1]
 gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042]
 gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412]
 gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034]
 gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W]
 gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146]
 gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407]
 gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W]
 gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1]
 gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431]
 gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112]
 gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83]
 gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212]
 gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327]
 gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B]
 gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89]
 gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687]
 gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14]
 gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010]
 gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68]
 gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180]
 gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1]
 gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11]
 gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252]
 gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125]
 gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044]
 gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86]
 gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74]
 gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b]
 gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b]
          Length = 274

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     +  ++  V    +     VSMGNPH +  VE+ +    + +
Sbjct: 121 PNFEPQHVP----FRANKAENLYLLRVAEQTVMFG-AVSMGNPHCVIQVEN-VKTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274


>gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
 gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
          Length = 276

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F+KM G+GN  +V+D      +++ + +  L+        DQI+L+       +D 
Sbjct: 1   MKLKFSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLADRHFGVGCDQILLVEKASQPGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VRF+       ++    ET+RGI+  +   DG+++VDM
Sbjct: 61  RYRIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP     D +     H+  V    L    VVSMGNPHA+  V D +    +
Sbjct: 121 GIPRFLPAEIPFLAEDDVI----IHLLDVADETLET-SVVSMGNPHAVQVV-DSVDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ KHP F   VN    ++    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 175 GEHGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  V V   GG L I W  +   V MTG A   + G++++
Sbjct: 235 LLDSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276


>gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 275

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
 gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
          Length = 290

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 137/284 (48%), Gaps = 10/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + S    F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 12  LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+
Sbjct: 72  SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P  +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+  
Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRT 185

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V    
Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
                +  V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 289


>gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
          Length = 274

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G +V        I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
 gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
          Length = 276

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W   +  ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQIS 275


>gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7]
 gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7]
          Length = 277

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDATSQKIENPNEISRFVSDRHFGIGSDGLVLILPSEIA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+  +    + + T ET+ GI    +  + ++   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +          +  N   VSMGNPHAI ++E+ +  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VSEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v]
          Length = 274

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
 gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
          Length = 274

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F     +  ++  V    +    VVSMGNPH +  V D +    + S
Sbjct: 121 PNFDPQQVP----FRANKAENLYLMRVAEQTIMCG-VVSMGNPHCVLQV-DSVKTAAVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  356 bits (914), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV   GNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568]
 gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568]
          Length = 274

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   + ++     + +    H  L    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFDPQTVPFRATKEE---KTYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    + +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274


>gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
 gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
          Length = 275

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275


>gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1]
 gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1]
          Length = 276

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPDLIRRLADRHTGVGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G +V K   +  ++V+MG+P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH +  V D     D+   
Sbjct: 124 EFEPNKIP----FKAKQKEKTYILRAGEHTLFCG-AVSMGNPHVVTVV-DSTEEADVDRL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             V+V + GG L I W    H + MTG A   ++G++ 
Sbjct: 238 ENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQIS 275


>gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510]
 gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510]
          Length = 283

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 105/286 (36%), Positives = 151/286 (52%), Gaps = 9/286 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G+GN  +VID R      ++  + A++        DQ +++        DAF+R
Sbjct: 4   EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG E  +CGN  RCV   L     R   +F+T  G+L A    +G I+VDMG P L
Sbjct: 64  IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA   D +  +      V H     P  V+MGNPHA+FFV DD     L   G 
Sbjct: 124 DWAAIPLAAPADTLRVET-----VAHGGFAAPVAVNMGNPHAVFFV-DDAEAVPLDEVGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +   HP F E  N+  A+V S  ++ +R WERG G+T ACGS +CA++VA+     T+R 
Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWIKK 289
             + + GG L IEW + + V MTG     + G+L  ++ +G+ + +
Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELVSR 283


>gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
 gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
          Length = 310

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 8/284 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+     ++T + +  L        FDQ++++       VD 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEVQ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDM
Sbjct: 61  RYRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP         ++ + +           +V +MGNPHA+  V DD+   ++
Sbjct: 121 GKPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL--YVANMGNPHAVIKV-DDVLTAEV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 178 EKLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGVREG 237

Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  V ++  + GG L I W +   V+MTG A   +EG    +
Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEGVFSPE 281


>gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163]
          Length = 274

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP    F     +  ++       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPQQIP----FRANKAENIYLMRAVEQTVMCG-VVSMGNPHCVLQV-DNVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274


>gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073]
 gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972]
          Length = 274

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF)
           (SP:P08885) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 275

 Score =  355 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82]
          Length = 274

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC   F  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937]
 gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937]
          Length = 274

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + +    H  L     VSMGNPH +  V D++    + +
Sbjct: 121 PNFEPQQVPFRAAKPE---KTYILRAAEHTVLCG--AVSMGNPHCVIQV-DNVDTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDGFMHL 274


>gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
 gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
          Length = 274

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 142/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQIANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385]
 gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385]
          Length = 290

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 136/284 (47%), Gaps = 10/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + S    F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 12  LSSMHFHFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPE 71

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+
Sbjct: 72  SDFHYRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLIT 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P  +   IP    F     ++ +I       L     VSMGNPH +  V DD+  
Sbjct: 132 VNMGVPEFEPNKIP----FRAKQSEKTYILRAGEHTLFCG-AVSMGNPHVVTVV-DDIRT 185

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V    
Sbjct: 186 AAVETLGPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGI 245

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
                +  V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 246 LQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 289


>gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
 gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
          Length = 283

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP     D+ D D    G      ++    V++GNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPVSDEGD-DACIYGVHLESGIQPVSCVNIGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
 gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
          Length = 274

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ+++I    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVS+GNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSIGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
 gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
          Length = 283

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++      D + +             FDQ +++      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+M
Sbjct: 62  RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP   +  + +    HI  V    +     V+MGNPHA+  V D++    +
Sbjct: 122 GKPRFMPSEIPFVPAHGENEDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DNVETAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 180 EHWGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239

Query: 241 --KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K    V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 240 LLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGELQ 281


>gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 276

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             V F+KM G+GN  +VID    +   + + I  L+       FDQ++++    D   D 
Sbjct: 1   MQVQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+       R      T  G +V    RDG ++V+M
Sbjct: 61  HYRIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  +   IPL  +  +     + I   +H F      VSMGNPH +  V DD+   D+
Sbjct: 121 GEPEFEPSKIPLKANKQENI---YIIRENDHTFFCG--AVSMGNPHCVLLV-DDIATTDV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G +L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       
Sbjct: 175 EGIGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQK 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           K N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 235 KLNKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
 gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
          Length = 274

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  +F  L     +K  +    +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
 gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
          Length = 279

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R     +     AI           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FL         + S+   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  LA   +K+      +             V+MGNPH I FVE D+  
Sbjct: 122 MGLPRLLAGEIPTTLAPVEEKVISVPLEVAGK----TWEVTCVNMGNPHCITFVE-DVAA 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L S G     HP F + +N    +V   + L +R WERG G+T ACG+ ACAS+VA  
Sbjct: 177 IELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              K +R  +V++ GG L IEW + +  V+MTG A++ + GKL
Sbjct: 237 LTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279


>gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
 gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
          Length = 279

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 141/285 (49%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61
             ++F K  G+GN  ++ID R      IT + AI           D ++     Q    D
Sbjct: 1   MTIEFTKYHGLGNDFILIDNRCDLTPLITPEMAIRMCDRHFGIGADGVIFALPGQK-GTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+  FLT        +  +   T+ G++  +   DG + 
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSKDYYLIHTLAGVIRPQLTDDGQVR 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L  + IP  LA    K+      IG        +   VSMGNPH I FVE D+
Sbjct: 120 VDMGSPRLLAQEIPTTLAPGNSKIINLPLEIGNQ----TWHITCVSMGNPHCITFVE-DV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G     HP+F +  N    +V +   L +R WERG G+T ACG+ ACAS+VA
Sbjct: 175 ASIPLEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               +  +R   +++ GG L IEW + +  ++MTG A++ + GK+
Sbjct: 235 GVLNNLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279


>gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146]
 gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146]
          Length = 274

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       R+     T    +      D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP    F     ++ +I  V    +     VSMGNPH +  VE D+    +  
Sbjct: 121 PQFEPGRIP----FKAAKAEKTYILRVAQQTVLCG-AVSMGNPHCVLQVE-DISRAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      + MTG A   ++G + +
Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274


>gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304]
 gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579]
 gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149]
 gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33]
          Length = 283

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 282

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID            ++A S       FDQ++L+       VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDGINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSELVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV  CGNG RC VRF+T +    +K    ET  G++V +   +G ++V+M
Sbjct: 62  RYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      +      HI  V    +     V+MGNPHA+  VED      +
Sbjct: 122 GQPRFMPSEIPFVPDSGEDSDALTHIILVGLESVP-VSCVNMGNPHAVIIVEDT-ETAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  +  H  F E VN+   ++ +   + LR +ERG G T ACG+ ACA+VVA   L 
Sbjct: 180 GQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVAGVRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +   +V V + GG L I W     V MTG A+  +EG+L 
Sbjct: 240 LLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGELQ 281


>gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
 gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
          Length = 279

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  +++D R     +     AI           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILVDNRASSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GADYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ RF+         + S+   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L  +  K+      +             VSMGNPH I FV  D+  
Sbjct: 122 MGLPRLLAGEIPTTLGTAETKVINQPLEVAGQ----TWEVTCVSMGNPHCITFVS-DVAA 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G     HP F + +N    +V S + + +R WERG G+T ACG+ ACAS+VA  
Sbjct: 177 IPLEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                +R  +V++ GG L IEW + +  ++MTG A+K + G+L
Sbjct: 237 LTGNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279


>gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
 gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
          Length = 279

 Score =  355 bits (911), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 98/283 (34%), Positives = 151/283 (53%), Gaps = 13/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K  G+GN  +++D R   +  +T D    L         D ++     Q    D  
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQ-GGTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC+ +FL     ++ K++   T+ G++  +   DG + VDMG
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKVDMG 121

Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           EP L  +LIP  LA + +K+      +             VSMGNPH + FV DD+   +
Sbjct: 122 EPQLLAELIPTTLAPAGEKVVDLPLAVAGQTWAVT----CVSMGNPHCLTFV-DDVDSLN 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP FS+  N    +V   + L +R WERG G+T ACG+ ACA+VVA+   
Sbjct: 177 LTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLT 236

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            + +R  +V++ GG L IEW   +N ++MTG A++ + G+ +I
Sbjct: 237 GRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279


>gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
 gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +      +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     ++ +I       +    VVSMGNPH +  VE D+   ++ S
Sbjct: 121 PEFEPQKVP----FRAQKVEKTYIIRAMERTVLCG-VVSMGNPHCVIQVE-DIKTAEVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +R V V + GG L IEW    N ++MTG A   ++G + +
Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75]
 gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75]
          Length = 274

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945]
 gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136]
          Length = 283

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627]
 gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627]
          Length = 274

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+    +  FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 276

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFVVVDCITQNVFFSPDLIRRLADRNTGIGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV+ CGNG RC  RF+       +   +  T +G ++     D  ++V+MG P
Sbjct: 64  IFNSDGGEVEQCGNGARCFARFVRMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    R++ +I       L     VS+GNPH +  VE +L    +   
Sbjct: 124 EFEPSKIP----FKAKQREKTYILRAQDKTLFCG-AVSLGNPHVVTVVE-ELSDALIDEI 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G +L  H  F E VN    +V S   + LR +ERG G T ACG+ ACA+V         +
Sbjct: 178 GPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             V+V + GG L I W  +   ++MTG A   ++G+L 
Sbjct: 238 ENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQLT 275


>gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586]
 gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586]
          Length = 276

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQIS 275


>gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4]
          Length = 276

 Score =  354 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275


>gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013]
          Length = 301

 Score =  354 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 140 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298


>gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2
          Length = 279

 Score =  354 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R      IT + A+           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FL         + ++   T+ G++  +   DG I VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L  +  K+      +             VSMGNPH I FVE D+  
Sbjct: 122 MGLPRLLAGEIPTTLGAADGKVINQPLEVEGQ----TWEVTCVSMGNPHCITFVE-DVAA 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G     HP F +  N    +V S + L +R WERG G+T ACG+ ACAS+VA+ 
Sbjct: 177 IPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 237 LTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279


>gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
 gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
          Length = 278

 Score =  354 bits (910), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R          +A+           D ++      D + D  
Sbjct: 1   MEFTKYQGLGNDFILVDNRHSTTPSLSPEEAVKLCDRHFGIGADGVIFALPG-DENSDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++     +G + VD
Sbjct: 60  MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVD 119

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L ++ +K+      +G  + L       VSMGNPH I FVE D+  
Sbjct: 120 MGTPFLLAKEIPTTLTKAEEKVIDQSLEVGDQSWLVT----CVSMGNPHCITFVE-DVAK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G     H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA  
Sbjct: 175 IPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
                +R  +V++ GG L IEW   +N ++MTG A++ + G +D
Sbjct: 235 LTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278


>gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
 gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
          Length = 281

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   D + S   A+           D ++ +        D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDRHFGIGADGVIFVLPGT-PQTDYQ 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+          K++  +T+ G++  +   +  ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVTVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L  + +K+      +G  + L       VSMGNPH I FVE+ +  
Sbjct: 122 MGPPQLQAAQIPTTLVTATEKVINQPLSVGGKSWLVT----CVSMGNPHCITFVEN-VDE 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G     H  F +  N     V   + L +R WERG G+T ACG+ ACA+VVA  
Sbjct: 177 IPLEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVAGL 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
             H+++R  +V++ GG L I W + + HV+MTG AK+ + G
Sbjct: 237 LTHRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277


>gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114]
 gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114]
          Length = 283

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 136/282 (48%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V++      D + +             FDQ +++      +VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDAVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++V+M
Sbjct: 62  RYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP   +  +      HI  V    +     V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPAHGENKDALTHIVLVGLESVP-VSCVNMGNPHAVILV-DDVETAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 180 EHWGGAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGVRNG 239

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  V V + GG L I W +   V MTG A+  +EG+L 
Sbjct: 240 LLKEGAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGELQ 281


>gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
 gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
          Length = 274

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I   +       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V         VVSMGNPH +  VE+ +   ++ 
Sbjct: 121 PIWEPAQIPFTANKFEKNYILRTDIQTV------LCGVVSMGNPHCVLQVEN-IQTANVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            +  V V + GG L IEW    + ++MTG+A+  ++G
Sbjct: 234 LDSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDG 270


>gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
 gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
          Length = 286

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 10/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           S+++ F KM G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D
Sbjct: 10  STLIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 69

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++V+
Sbjct: 70  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 129

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+L+   IP      K+++    +             VSMGNPH +  V+D      
Sbjct: 130 MGIPVLEPSKIPFTAK--KVEKTYLLLAS---SGTYLCGAVSMGNPHCVIEVDDVAAADV 184

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
             + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 185 -DTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGIQQ 243

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            K +R V V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 244 GKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284


>gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
 gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
          Length = 277

 Score =  354 bits (910), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 144/282 (51%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+      +  + I  L+       FDQ++++   +D  +D 
Sbjct: 1   MLLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV++CGNG RC  RF+  +    ++    ET  G L      DG +SVDM
Sbjct: 61  RYRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P    + +P     D+      H   V+   +      S+GNPHA+  V DD+    +
Sbjct: 121 GKPRFAPQDLPFEADGDR----PLHDLEVDGQQISIGVA-SLGNPHAVLRV-DDVTTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP F   VN    +V S   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 175 ATLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVACGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                V+V + GG L I+W D   ++ MTG A++ +EG++ I
Sbjct: 235 LLESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276


>gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
 gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
          Length = 276

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 22/288 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             V F KM+G+GN  +VID      ++T+  +  ++        DQ++L+       VD 
Sbjct: 1   MRVAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    ++    +T  G++      D  ++VDM
Sbjct: 61  GYRIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDM 120

Query: 121 GEPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P      IP     +      + D+ R  IG            VSMGNPH +  V   
Sbjct: 121 GVPRFAPDEIPFKADHEADSYLLEFDKQRVEIG-----------AVSMGNPHCVLRVA-A 168

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A +G +L +HP F + VN+    V S   + LR +ERG G T ACG+ ACA++V
Sbjct: 169 IDAAPIACWGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMV 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                   +  V+V + GG L I W      V+MTG A+  +EG +++
Sbjct: 229 IGRRRGWLSEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276


>gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355]
 gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196]
          Length = 283

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
 gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
          Length = 288

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T     AL+        DQI+++       VD 
Sbjct: 1   MKLQFTKMHGAGNDFIVLDGIHQKLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI+N DG EV+ CGNG RC VRF+T R    ++S   E + G++  K   DG ++VDM
Sbjct: 61  RYRIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           GEP L    +P            +D  +   VN         VSMGNPHA+  V DD+  
Sbjct: 121 GEPELTPARVPFIADGLPTRAEAQDTLYGLEVNGR-TEWISPVSMGNPHAVQIV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
                +  V V   GG L I W      V MTG A   +EG +D+ T
Sbjct: 239 RRGLLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLST 285


>gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
 gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
          Length = 274

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+       ++     T  G +      +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F     ++ +I       +    VVSMGNPH +  VE D+   ++ S
Sbjct: 121 PEFEPQKVP----FRAQKVEKTYIIRAMERTVLCG-VVSMGNPHCVIQVE-DIKTAEVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +R V V + GG L IEW    N ++MTG A   ++G + +
Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
 gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
          Length = 274

 Score =  354 bits (909), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   + ++     + +    H  L    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFDPQAVPFRATKEER---TYIMRAAEHTVLCG--VVSMGNPHCVLQV-DDVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    N +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573]
 gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573]
          Length = 276

 Score =  354 bits (909), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQIS 275


>gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont]
          Length = 274

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +PL  +      +  ++  V    +     VSMGNPH +  VE  +    + +
Sbjct: 121 PNFDPQQVPLRANK----AENLYLQRVAEQTVMFG-AVSMGNPHCVIQVES-VKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G + +
Sbjct: 235 AVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274


>gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana]
 gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana]
 gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana]
          Length = 362

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        + SFT  T  G++V +   DG +
Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P   S +K +        V      N   VSMGNPH I F +    
Sbjct: 193 KVDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 251

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 252 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 311

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359


>gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 274

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DNVETAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274


>gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
 gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
          Length = 278

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE  ++  ++  
Sbjct: 125 PDFEPQRVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVIQVES-IHTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    + S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            + V V + GG L I W    + ++MTG A   ++G + +
Sbjct: 239 AKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278


>gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a]
 gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a]
          Length = 274

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKVEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
 gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
          Length = 278

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+ +M  F+KM G+GN  +V+D    +   + + I+ L+       FDQ++L+    D  
Sbjct: 1   MERNM-QFSKMHGLGNDFMVVDGVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPD 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     ++     T  G +V   N +  + 
Sbjct: 60  LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMVLTINENDDVC 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE  +  
Sbjct: 120 VNMGEPEFEPQKVP----FRAIKAEKTYIIRALERTVLCG-VVSMGNPHCVIQVES-VKT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++   G +L  H  F E  N+    + S   + LR +ERG G T ACGS ACA+V    
Sbjct: 174 AEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACAAVAIGI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                   V V + GG L I W+     ++MTG A   ++G + +
Sbjct: 234 QQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278


>gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 276

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 147/282 (52%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D            I  LS  +    FDQ++++    D  +D 
Sbjct: 1   MLLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  +F+  R    ++    ET RG +  +    G ++VDM
Sbjct: 61  RYRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  + + +P       +    + I   +  +L  P  VS+GNPHA+  V+  +   ++
Sbjct: 121 GAPSFEPQDLPFTAEPCDV---LYSIMAEDTEYLITP--VSVGNPHAVIKVDQLIDD-EV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+  H  F   VN+   +V + + ++LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 AKVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V+  + GG L IEW  + + + MTG A+K +EG++ +
Sbjct: 235 WLSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQIYL 276


>gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)]
          Length = 293

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 8/284 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       VD 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP         ++ +H+           +V +MGNPHA+  V DD+   D+
Sbjct: 121 GKPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKV-DDILTADV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 178 EKLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREG 237

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +    +  ++ GG LLI W     V MTG     +EG     
Sbjct: 238 WLDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVFSPD 281


>gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1]
 gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1]
          Length = 286

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 142/285 (49%), Gaps = 8/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + DG ++VDM
Sbjct: 61  EYVIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDM 120

Query: 121 GEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G+P+L+  L+P   +      +   +     +          VSMGNPHA+  V DD+ H
Sbjct: 121 GQPVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAPVSMGNPHAVQLV-DDVDH 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A++G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+VVA  
Sbjct: 180 APVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                +  V V   GG L IEW D   V MTG A+  +EG++++ 
Sbjct: 240 RWGLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283


>gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
 gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
          Length = 280

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 7   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  I V+MGE
Sbjct: 67  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVNMGE 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + I  V    L    VV+MGNPH +  VE D+   D+  
Sbjct: 127 PDFEPQRVPFRANKAE---KTYIIRAVERTVLCG--VVAMGNPHCVIQVE-DVNTADVEV 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 181 LGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 240

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  VSV + GG L I W      +FMTG A   ++G + +
Sbjct: 241 DNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280


>gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
 gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
          Length = 286

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 98/283 (34%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R     +  + +AI           D ++      D + D  
Sbjct: 1   MEFTKYQGLGNDFILVDNRHNAIPLLSSKEAIKLCDRHFGIGADGVIFALPG-DENTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++ +   DG + VD
Sbjct: 60  MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEEDGQVKVD 119

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L +  +K+      +G  +         VSMGNPH I FV D++  
Sbjct: 120 MGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQSWSVT----CVSMGNPHCITFV-DNVAT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +   H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA  
Sbjct: 175 IPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                +R  +V++ GG L IEW + +N ++MTG A+  + G +
Sbjct: 235 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVM 277


>gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
 gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
          Length = 274

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274


>gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
 gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
          Length = 277

 Score =  353 bits (907), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/278 (35%), Positives = 142/278 (51%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D        + + I  LS       FDQ++L+    D  VD   
Sbjct: 3   LKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEVQ CGNG RC VRF+       ++     T+ G+L  K N D S++V+MG 
Sbjct: 63  RIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LD + +P          +      V          VSMGNPHA+  V+ D+    +  
Sbjct: 123 PQLDPEKLPFKAEAQSESYELC----VKGFDAVTIGAVSMGNPHAVINVK-DVKTAPVHE 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+L+ KH  F E VN+  ++  +   ++LR +ERG G T ACG+ ACA+VVA    H+ 
Sbjct: 178 LGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVVAGIVQHRL 237

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
              V V + GG L I W   N  V M+G A   +EG++
Sbjct: 238 VSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQI 275


>gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 274

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274


>gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
 gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
          Length = 274

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 141/281 (50%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T ACGS A A+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
 gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
          Length = 274

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +++D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P    F     ++ +I       +    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFDPQTVP----FRAAKAEKTYIMRAAEHTV-LAGVVSMGNPHCVLQV-DDVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDGFIHL 274


>gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis
           alpha710]
 gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190]
 gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902]
          Length = 283

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 274

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274


>gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
 gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
          Length = 274

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G ++ +   D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      +  L      VVSMGNPH +  VE D+ H ++  
Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTGEA   ++G + +
Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274


>gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640]
 gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06]
          Length = 283

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID    +       I   +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+T +    +K    ET +G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
 gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
          Length = 279

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPD 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     ++     T +G ++     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+ 
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIK 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V   
Sbjct: 174 TAPVNELGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 IMQGLLDSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDGFIKL 279


>gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
 gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
          Length = 280

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 16/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K  G+GN  +++D        ++    A+           D ++L+     A  D 
Sbjct: 1   MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            +RI N DGSE + CGN +RCV ++L  R  +K      ET+ G+++ +    E R   +
Sbjct: 59  SMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP L+   IP+     ++  +    G   +        VSMGNPH + FV+ DL 
Sbjct: 119 RVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRIT----AVSMGNPHCVIFVQ-DLD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                + G L+  HP F    N+   +V + E + +R WERG G T ACG+ ACA+VVA 
Sbjct: 174 AVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                T R V+V +  G L IEW +  HV+M+G A++ + G+   +T
Sbjct: 234 VLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280


>gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 275

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS+V  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSQVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275


>gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568]
 gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399]
          Length = 283

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 362

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 139/288 (48%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        + SFT  T  G++V +   DG +
Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P     +K +        V+     N   VSMGNPH I F +    
Sbjct: 193 KVDMGTPILKAQDVPTKLPGNKGEAVVQAELVVDGES-WNVTCVSMGNPHCITFGKKGGP 251

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G    +H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 252 NLKVDDLNLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLACGTGACA 311

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359


>gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
 gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
          Length = 276

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I       L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQIS 275


>gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
 gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
          Length = 274

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +      T  G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +  +     + +    H  L     VSMGNPH +  V DD+    +A 
Sbjct: 121 PNFDPQAVPFRATKAE---KTYIMRAAEHTVLCGI--VSMGNPHCVLQV-DDVNTAKVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    + +FMTG A   ++G + +
Sbjct: 235 SEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274


>gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca]
          Length = 286

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A+           D ++      D + D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+     +     ++   T  G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   S + +      +         +   VSMGNPH I FV DD+    
Sbjct: 122 MGLPRLLAAEIPTTLSENSLKVIDVPLQVAGQP--WSVTCVSMGNPHCITFV-DDVASVP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
            + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L     +
Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFPINE 285


>gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 275

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +    +F     ++ +I       +    VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQV----TFRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330]
          Length = 282

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 145/282 (51%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID         ++ I   +       FDQ++++   Q   VD   
Sbjct: 4   LKFSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T +    +     ET RGI+  + N DG ++V+MG+
Sbjct: 64  RIFNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQ 123

Query: 123 PILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P      +P   RS +K D   F +  VN +      +VSMGNPHA+  V  D+    + 
Sbjct: 124 PRFAPDDVPFVLRSGEKADDKTFIV--VNGIDSAEMSLVSMGNPHAVMLV-GDVATAPVE 180

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           ++GN L  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+VV+   L  
Sbjct: 181 NWGNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSL 240

Query: 242 T--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 + V + GG L I W D   V MTG A   + G++ +
Sbjct: 241 LTAGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282


>gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa]
 gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 9/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F K  G+GN  +++D R   +  IT +    L         D ++      +   D  
Sbjct: 1   LHFVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPGIN-GTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC  RF+        K+ SF+  T  G++V +   DG + VD
Sbjct: 60  MRIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEP+L    +P   + +K D        V+     N   VSMGNPH + F +  +   +
Sbjct: 120 MGEPVLKAADVPTKLAANKNDAVVKSELVVDG-VTWNVTCVSMGNPHCVTFGDLQVDSLN 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA+VVA+   
Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               R  +V + GG L IEW  ++NHV+MTG A+  ++G + +
Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281


>gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 274

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P   +  +     + +  V    L    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVPFRANKAE---KTYIMRAVEQTILCG--VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274


>gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
 gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R     +    +A+           D ++      D   D  
Sbjct: 13  MEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDD-QSDYT 71

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RFL          KS+  +T+ GI++ +   +G + VD
Sbjct: 72  MRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKVD 131

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L +  +K+      +G  +         VSMGNPH I FVE+ +  
Sbjct: 132 MGNPFLLAKEIPTTLTKGEEKVINQFLEVGGQSWSVT----CVSMGNPHCITFVEN-VAT 186

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +   H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA  
Sbjct: 187 IPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 246

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                +R  +V++ GG L IEW + +N ++MTG A+  + G +
Sbjct: 247 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 289


>gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           WUE 2594]
          Length = 283

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAQV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39]
          Length = 295

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 11/284 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A+           D ++      D + D  
Sbjct: 11  IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 69

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+     +     ++   T  G++  +   DG + VD
Sbjct: 70  MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 129

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   S + +      +         +   VSMGNPH I FV DD+    
Sbjct: 130 MGLPRLLAAEIPTTLSENSLKVIDVPLQVAGQP--WSVTCVSMGNPHCITFV-DDVASVP 186

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 187 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 246

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + +R V+V++ GG L IEW   +  ++MTG A++ ++G+L   
Sbjct: 247 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQLTFP 290


>gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223]
 gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223]
          Length = 290

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 18  HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 78  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 137

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I       L     VSMGNPH +  V DD+    + + 
Sbjct: 138 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRAAAVETL 191

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 192 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 251

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 252 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQIS 289


>gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341]
 gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341]
          Length = 276

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  VE D+    + + 
Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVE-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQIS 275


>gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894]
 gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894]
          Length = 274

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PVFEPSLVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   +V + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
 gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
          Length = 281

 Score =  352 bits (904), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 141/287 (49%), Gaps = 15/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F K +G+GN  ++ID R   + + +   A+           D ++     Q A  D
Sbjct: 1   MKIPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQ-AETD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF----TFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+ +F+       +        T+ G ++ +   +  ++
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVT 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L    IP  L +  +K+      +   + L       VSMGNPH + FV  DL
Sbjct: 120 VDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLVT----CVSMGNPHCVTFV-GDL 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G     HP+F +  N+    V + + + +R WERG G+T ACG+ ACA VVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +    K +R  +V++ GG L I W   +N V+MTG AK  +EG   I
Sbjct: 235 ALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281


>gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801]
 gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801]
          Length = 281

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  +     AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L  S DK+      +     L       VSMGNPH I FV+ D++ 
Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVK-DVWG 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             ++ +R   V++ GG L IEW + +N ++MTG A+  + G  ++
Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281


>gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
 gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
          Length = 301

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298


>gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
 gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
          Length = 274

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+   +   ++     T  G +V     D S+ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +     F     ++ +I       +    VVSMGNPH +  V D + +  +A+
Sbjct: 121 PNFDPQQV----LFRAARVEKTYIMRAAEQTVLCG-VVSMGNPHCVIAV-DSVDNAPVAT 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V       + 
Sbjct: 175 LGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQGQL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDGFIHL 274


>gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
 gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
          Length = 283

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+T +    +K    ET +G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F E VN+   +V     + LR +ERGVG T ACG+ ACA+V A   L 
Sbjct: 180 RETGPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGIRLG 239

Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +   +++  + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280


>gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 275

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       F+Q++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + 
Sbjct: 121 EPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
 gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
          Length = 328

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             ++ F KM G+GN  +V+D       +  + I  L+       FDQ++++       VD
Sbjct: 33  GGVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVD 92

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+  +    +K    +T  GI+  +  +DG + VD
Sbjct: 93  FRYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVD 152

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L+   +P +      +    +   VN   +    VVSMGNPH +    DD+    
Sbjct: 153 MGVPRLEPATVPFSAD----EFAPVYNLDVNGQNIEL-SVVSMGNPHGVILT-DDVDSAP 206

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A+ G LL KH  F    N+   ++     + LR +ERG G T ACG+ ACA+VVA    
Sbjct: 207 VATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVAGCLR 266

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
              +  V V++ GG L+IEW      V M G     +EG+L +     +++ +
Sbjct: 267 GLLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPAEPGMRRRK 319


>gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
 gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
          Length = 281

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  +     AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L  S DK+      +     L       VSMGNPH I FV+ D++ 
Sbjct: 122 MGTPYLLAKEIPTTLGNSNDKVINHSLEVAGQTWLVT----CVSMGNPHCITFVK-DVWG 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             ++ +R   V++ GG L IEW + NN ++MTG A+  + G  ++
Sbjct: 237 LTNQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281


>gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3]
 gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3]
          Length = 269

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 144/273 (52%), Gaps = 10/273 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+MG P+L+ 
Sbjct: 61  DGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPMLEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP   +  K+++    +             VSMGNPH +  V DD+ + D+ + G+ L
Sbjct: 121 SKIPF--NAKKVEKTYLLMASTG---TYLCGAVSMGNPHCVIDV-DDVANTDVDTIGSEL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K  R V 
Sbjct: 175 TQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERNVR 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           V + GG L+I W  +   ++MTG A+  ++G++
Sbjct: 235 VDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267


>gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
 gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
          Length = 279

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R     +     A+           D ++     Q+   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRSSLTPVITPQQAVKWCDRHFGIGADGVIFALPGQND-TDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FLT        +  +   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTKDYYRIHTLAGVITPQLTHDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  + IP   +F   D    ++         +   VSMGNPH I F+E D+    
Sbjct: 122 MGLPRLLAQEIPT--TFAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIE-DVAAIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F + +NL    + +   L +R WERG G+T ACG+ ACA +VA    
Sbjct: 179 LEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAGVLN 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            K +R  ++++ GG L IEW + +  ++MTG A++ + GK 
Sbjct: 239 DKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279


>gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
 gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
          Length = 275

 Score =  352 bits (903), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 138/282 (48%), Gaps = 11/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID      ++    I   +       FDQ++++    ++  D 
Sbjct: 1   MKLKFTKMHGLGNDFIVIDAINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+      ++ +   ET  GI++     +G +SVDM
Sbjct: 60  RYRIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D   IP    F   +R   +   VN   +     VSMGNPHA+  V  D+    +
Sbjct: 120 GIPRFDPARIP----FITQERALTYPLNVNDREIE-ISAVSMGNPHAVQIVP-DIDLAPV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 174 TSEGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V V M GG L I W  ++  V+MTG A   +EG +D+
Sbjct: 234 LLDSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275


>gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
 gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
          Length = 284

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  ++++     D + +  A        +   D ++++   +    D  +
Sbjct: 3   LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLCRRHFSIGADGLIIVLPPESVEHDFRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           RI N DGSE + CGNG+RC   +L       R     ET+ GI+  +          I V
Sbjct: 63  RIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSLIKV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P    + IP+    D++D  +     + +  L N   VSMGNPH I FVE D+   
Sbjct: 123 NMGRPHFKSEEIPVNIE-DELDYVKNFPLKIGNKKL-NINCVSMGNPHTIIFVE-DVNQI 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            ++++G  +  +P+F +  N+   ++ S + + +R WERG G+T ACG+ ACASVVA   
Sbjct: 180 PVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                  V+V + GG L IEW + + VFMTG A+  + GK+ I+ G
Sbjct: 240 NGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284


>gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           8013]
          Length = 283

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa]
 gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S  + F K  G+GN  +V+D R   +       A+     +     D ++      +   
Sbjct: 26  SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVN-GT 84

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSI 116
           D  +RI N DGSE + CGNG+RC  RF+        KR+SFT  T  G++V +   DG +
Sbjct: 85  DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQV 144

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMGEP+L    +P   + +K D        V      N   VSMGNPH + F      
Sbjct: 145 KVDMGEPVLKAANVPTKLASNKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGTKGGE 203

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 204 DLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGACA 263

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 264 TVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314


>gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6]
 gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6]
          Length = 277

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISRFVSDRHFGIGSDGLVLILPSDLA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+  +    + + T ET+ GI    +  + ++   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +          +  N   VS+GNPHAI ++E+ +  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSIGNPHAITYIEN-VEEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336]
 gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336]
          Length = 274

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      +  L      VVSMGNPH +  VE D+ H ++  
Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L+IEW    H ++MTGEA   ++G + +
Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274


>gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
 gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
          Length = 288

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 137/287 (47%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T++   AL+        DQ++++       VD 
Sbjct: 1   MKLQFTKMHGAGNDFVVLDGIHQKLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P L+   +P             D  +   +N         VSMGNPHA+  V DD+ +
Sbjct: 121 GAPELEPARVPFRPDGLPVRTQGEDIAYGLEINGR-TAWISPVSMGNPHAVQVV-DDVEN 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+  H  F   VN    +V    +  LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
                +  V V   GG L I W      V MTG A   +EG +D+  
Sbjct: 239 RRGLLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDLAA 285


>gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
 gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
          Length = 281

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 130/282 (46%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID       +  + I    +      FDQ++++   + A    
Sbjct: 1   MTIHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWANRHFGIGFDQLLIVEPPKTADTLF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  R++  +     K     T  G +V   N  G ++VDM
Sbjct: 61  TYRIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+     IP     +              +       VSMGNPHA+  VE+ +    +
Sbjct: 121 GRPMFTPTNIPFITECEATSYPLTLDDGSEWVID----AVSMGNPHAVLEVEN-VDTAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           +  G ++  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+VV+    +
Sbjct: 176 SHLGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAAVVSGIRRN 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLD 280
           + +    V + GG L + W     + V MTG A+  +EG++ 
Sbjct: 236 RLDSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQIT 277


>gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
 gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
          Length = 278

 Score =  351 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE  +   ++  
Sbjct: 125 PEFEPQKVP----FRAVKEEKTYIIRAQERTVLCG-VVSMGNPHCVVQVES-VQTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    + S E + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGIGQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           ++ V V + GG L I W      ++MTG A   ++G + I
Sbjct: 239 SKRVRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278


>gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 274

 Score =  351 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
          Length = 274

 Score =  351 bits (902), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638]
 gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638]
          Length = 274

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F  +  ++ +I   +   +    VVSMGNPH +  V DD+    +  
Sbjct: 121 PNFEPSAVP----FRAIKAEKTYIMRASEQTVLCG-VVSMGNPHCVIQV-DDVDTAAVEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDGFIHL 274


>gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 274

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F  +  ++ +I  V    +    VVSMGNPH +  V  D+   ++  
Sbjct: 121 PEFEPHHVP----FRALRAEKTYILRVAERTVLCG-VVSMGNPHCVIQVP-DVETAEVDI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      ++MTG A   ++G + +
Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274


>gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297]
 gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297]
          Length = 274

 Score =  351 bits (902), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 135/280 (48%), Gaps = 9/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID       ++++ I           FDQ++L+        D 
Sbjct: 1   MRLKFTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV++CGNG RC  RF+     ++  +   ET  G L  +   +G ++VDM
Sbjct: 61  RYRIFNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP        D+   +   V    L +   +++GNPH +  V DD+   D+
Sbjct: 121 GRPRTRPDKIPFLAD----DKAALYDINVLDETL-SISAINVGNPHCVTRV-DDVLTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H  F + VN    ++    ++ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 ERLGPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +  VSV + GG L I W    ++ MTG A + +EG + 
Sbjct: 235 WLDHTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEGVIT 274


>gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51]
 gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51]
          Length = 285

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPNKIP----FRAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
             V V + GG L I W      ++MTG A   ++G
Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDG 272


>gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032]
 gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032]
          Length = 274

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PVFEPSLVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   ++ + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As]
          Length = 287

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 7/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             V F KM G GN  +V+D       +++  +  L+        DQI+L+       VD 
Sbjct: 1   MQVAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLADRHFGVGADQILLVEAAPSPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VDM
Sbjct: 61  GYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D   +P  A        D +   P++ +       V+SMGNPHA+  V DD+   
Sbjct: 121 GAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRV-DDVDTA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + S G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA   
Sbjct: 180 PVLSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
                 AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 240 HGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284


>gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
 gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
          Length = 278

 Score =  351 bits (901), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H     + +  LS       FDQ++++    +  VD 
Sbjct: 1   MLLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +     ET  GI+     +DG + V+M
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G        +P   + ++ +R +  +   +  +      VSMGNPH +  V DD++   +
Sbjct: 121 GAARFSPSDLPF--NAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVV-DDIHSELV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H  F + VN    ++ +   +DLR +ERG G T ACG+ ACA+V  +    
Sbjct: 178 NQLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKWG 237

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W     V M G   + ++G+L +
Sbjct: 238 LVDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278


>gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2]
 gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2]
          Length = 277

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+  +    + + T ET+ GI    +  +  +   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +          +  N   VSMGNPHAI ++E+ +  +
Sbjct: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VDEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA + AS  
Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ + H++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277


>gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
          Length = 283

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 279

 Score =  351 bits (901), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+ 
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V   
Sbjct: 174 LAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313]
          Length = 280

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++         S+    +S        D ++LI   + A  D  +
Sbjct: 1   MRFTKMHGLGNDYIYVNCFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +++  R    +     ET+ GI    L  ++ +   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+    +    +   I             VSMGNPHA+ +V++ +  +
Sbjct: 119 DMGEPILKPENIPVNSDKEIFRTEPVEIDGKEFKVT----CVSMGNPHAVSYVKN-VDIF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  HP+F + +N     V    +L +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + R  +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+
Sbjct: 234 NGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277


>gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603]
 gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603]
          Length = 276

 Score =  350 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + +    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I       L     VSMGNPH +  V DD+    + + 
Sbjct: 124 EFEPSKIP----FRAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVV-DDIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G++ 
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQIS 275


>gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
 gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
          Length = 283

 Score =  350 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID    +       I   +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET +G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42]
 gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42]
          Length = 315

 Score =  350 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 140/292 (47%), Gaps = 12/292 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           ++  + F KM+G GN  +V+D       +T      L+        DQI+++     A +
Sbjct: 22  RAMHIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILIVRPSPGAGI 81

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++V
Sbjct: 82  DFEYVIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTV 141

Query: 119 DMGEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           DMG P L+   +P   +           +    +            VVSMGNPHA+  V 
Sbjct: 142 DMGRPELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGNPHAVQLV- 200

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+    +A  G L+  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+
Sbjct: 201 DDVDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAA 260

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           VVA   L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 261 VVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312


>gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
 gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
          Length = 277

 Score =  350 bits (900), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 134/282 (47%), Gaps = 9/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  ++ID       IT +    L+        DQ++++        D 
Sbjct: 1   MRLRFTKMHGLGNDFVMIDAISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV++CGNG RC   F+  R    +   T ET  G +V     D  ++VDM
Sbjct: 61  KYRIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PIL    IPLA       +   +  P           VSMGNPHA++ V +D     +
Sbjct: 121 GAPILSPADIPLAAP----QQATSYTLPTQGAGDITIGAVSMGNPHAVYCV-NDCKTAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F + VN    +V S   ++LR +ERG G T ACG+ ACA+VVA     
Sbjct: 176 ETLGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                V V + GG L I W   ++ V MTG A   + G++ I
Sbjct: 236 LLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277


>gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 274

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L S   ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
 gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
          Length = 290

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 144/291 (49%), Gaps = 15/291 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +   + F KM GIGN  + ++         ++    +S        D ++LI     A  
Sbjct: 5   REQPMKFTKMHGIGNDYVYVNCFEESIKNPAEVSKFVSDRHFGIGSDGLILI--SPSAKA 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D  + I N DGS+ + CGNG+RCV +++       +   + ET+ GI    L  +  +  
Sbjct: 63  DFRMNIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVA 122

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++ V+MG PIL+ K IP+A   + +      +    +    +   VSMGNPHAI F+ D+
Sbjct: 123 TVEVNMGAPILEPKKIPVAVENNPVVDVPVEVKGKTY----HMTCVSMGNPHAIIFM-DN 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+ + G     HP+F +  N     V    ++++R WERG   T ACG+ ACA+ V
Sbjct: 178 VKELDIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTV 237

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284
           A    +KT   V+V +LGG L I W    + V+MTG A   ++G++ +  G
Sbjct: 238 ACILNNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288


>gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14]
 gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14]
          Length = 276

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D 
Sbjct: 1   MQINFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+       +   +  T  G ++ K   D  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PI +   IP+         ++ +I       L      SMGNPH    V DD+   D+
Sbjct: 121 GVPIFEPNKIPMKAK----QAEKTYILRAGEQTLFCGAA-SMGNPHC-VTVVDDVDTADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V       
Sbjct: 175 DTLGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V V + GG L I W  +   +FMTG A   ++G+ 
Sbjct: 235 LLDENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
 gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
          Length = 280

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 12/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + FAK  G+GN  +++D R      +T + A+     +     D ++          D  
Sbjct: 3   LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPG-SGDSDYV 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC+ +FL       +  +   T  G++V      G ++VDMG
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121

Query: 122 EPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              L    IP  L  + D++      +G            VSMGNPH I FVE D+    
Sbjct: 122 PAYLKPVEIPTTLTGTGDRVVEADLEVGDRPWKVT----TVSMGNPHCITFVE-DVAAVP 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G L   HP+F +  N     V   + L +R WERG G T ACG+ ACA++VA+   
Sbjct: 177 LAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLT 236

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            +++R  +V++ GG L IEW ++ H+FMTG A K + G +++  
Sbjct: 237 GRSDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMELAA 280


>gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20]
 gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 274

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
 gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
          Length = 278

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RFL       +K     T  G +  +   D  + V+MGE
Sbjct: 65  RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+   + IP            + +    H  L    VVS+GNPH +  VE D+   ++A 
Sbjct: 125 PVFTPRQIPFCA---TTTEKTYILRTAGHTTLCG--VVSIGNPHCVLQVE-DVATANVAL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F +  N+   ++   ++++LR  ERGVG T ACGS ACA+V         
Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           ++ V VK+ GG L I+W    H ++MTG A   ++G + +
Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278


>gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas
           arsenicoxydans]
          Length = 283

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +VID      + T      L+        DQ++++   Q A VD 
Sbjct: 1   MKIKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDM
Sbjct: 61  RYRIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDM 120

Query: 121 GEPILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G PIL  + +P   S         D      +         V+SMGNPHA+  V  D  H
Sbjct: 121 GAPILTPEDVPFDVSGLLCKAEGADTLWPLDIKGE-THWISVLSMGNPHAVQVVA-DADH 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+  
Sbjct: 179 APVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                   + V+  GG L I W  +N  V +TG A   +EG++++
Sbjct: 239 RRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283


>gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945]
 gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18]
 gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140]
 gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1]
 gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945]
 gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 283

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
 gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
          Length = 274

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPSQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVLQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
 gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
          Length = 314

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID         S  I A +       FDQ++L+   Q  + D   
Sbjct: 32  LKFSKMHGLGNDFMVIDGINQVFTPNSAHIAAWANRHFGIGFDQLLLVERAQTPAADFRY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EVQ CGNG RC  +F+  +    +     ET  GI+  +   +G ++VDMG 
Sbjct: 92  RIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVDMGA 151

Query: 123 PILDWKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           P +    IP     D           I   N        +VSMGNPHA+  V DD     
Sbjct: 152 PRVLPDDIPFRLPADGSETAGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRV-DDTKTAP 210

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  L +HP F E VN+   ++     + LR +ERG G T ACG+ ACA+VVA    
Sbjct: 211 VAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAAVVAGMRQ 270

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                   V V + GG L ++WH  +HV MTGEA   ++G+L
Sbjct: 271 GWLAAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312


>gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
 gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
          Length = 283

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D    + G      ++    V+MGN HA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGDDACIY-GVHLESGIQPVSCVNMGNSHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
 gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
          Length = 283

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385]
          Length = 301

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298


>gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 140/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV   GNG RC  RF  L     +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  V DD+   ++ 
Sbjct: 121 PIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGNPHCVVQV-DDIQTANVE 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    ++ + E + LR +ERG G T A GS ACA+V        
Sbjct: 174 QLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 234 LNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 279

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L S   ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+ 
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V   
Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
 gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
          Length = 295

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D + +P A    +  R+    + P++     R    VSMGNPHA+  V DD+  +
Sbjct: 121 GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVV-DDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
             + +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 240 RGRLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286


>gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
 gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
          Length = 287

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D + +P A    +  R+    + P++     R   VVSMGNPHA+  V  D+  +
Sbjct: 121 GTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVV-GDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
               +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 240 RGLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286


>gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
 gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
          Length = 277

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+  +    + + + ET+ GI    +  +  +   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +          +  N   VSMGNPHAI ++E+ +  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKD----YCYNFTCVSMGNPHAITYIEN-VEEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F +  N+    +    ++ +R WERG G T ACG+ ACA + AS  
Sbjct: 174 PLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L+IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277


>gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 279

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/286 (34%), Positives = 140/286 (48%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MGEPI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+ 
Sbjct: 121 VNMGEPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V   
Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 279

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             V F KM+G+GN  +VID        + + I  ++        DQ++L    + +  D 
Sbjct: 1   MKVRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118
              I N DGS+ + CGNG+RC+ RFL  R      R     ETI G+   +   DG ++V
Sbjct: 61  GYLIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P+L+   IP        + +    G V  L       VSMGNPHA+  V DD+   
Sbjct: 121 DMGAPVLEPPHIPFRAPSRAREYELEVEGQVVRLG-----AVSMGNPHAVLRV-DDVDSA 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G  +  H  F   VN+   +V +   + LR +ERG G T ACG+ ACA+VV+   
Sbjct: 175 PVETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
                 AV V + GG L+I W  +  HV+MTG A+  +EG++ + 
Sbjct: 235 RGWLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279


>gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72]
 gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72]
          Length = 277

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++T   + A++        DQ++++       VD   
Sbjct: 3   IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++      DG +SVDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IP     D   +          +       VSMGNPHA+  V  D+    +A 
Sbjct: 123 PELSPARIPFVSDSDAWVQPLQLAEDTVAI-----TAVSMGNPHAVQVVA-DVDTAPVAR 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F   VN    +V     + LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 QGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVAGIGRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
              V V+  GG L I W      V MTG A   +EG+L++ 
Sbjct: 237 VSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277


>gi|255636095|gb|ACU18392.1| unknown [Glycine max]
          Length = 359

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +   S   A+     +     D ++ +       
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGIS-G 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    +P     +K D        V    + +   VSMGNPH + F  +   
Sbjct: 190 RVDMGEPILKASDVPTKLHANK-DNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
 gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
          Length = 276

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F+KM G+GN  +VID      ++T + I  L        FDQ++L+   ++A  D 
Sbjct: 1   MKLKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  +F+  +    +     ET RG++  +   DG   VDM
Sbjct: 61  RYRIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P     + +     +  P+           SMGNPHA+  V DD+    +
Sbjct: 121 GVPRFRPADLPFLADAEAL----TYSLPLPEGRCEIGIA-SMGNPHAVQRV-DDVDAAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VV      
Sbjct: 175 AEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V+V   GG ++IEW  + + V MTG A   ++G++++
Sbjct: 235 LLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276


>gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
 gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
          Length = 292

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +     A +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++VDMG 
Sbjct: 63  VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 122

Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P L+   +P   +           +    +            VVSMGNPHA+  V DD+ 
Sbjct: 123 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGNPHAVQLV-DDVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
             L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 242 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289


>gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1]
 gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 7/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      +++      ++        DQ++++   +   VD 
Sbjct: 1   MKIKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   DG I+VDM
Sbjct: 61  RYRIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G PIL    +P  +      +     + P++         VVSMGNPHA+  VED     
Sbjct: 121 GAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVEDS-EAA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + S G L+ +H  F + VN    +V     ++LR +ERG G T ACG+ ACA+VVA   
Sbjct: 180 PVLSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
               +  V+V+  GG L I W      V MTG A   +EG++++ 
Sbjct: 240 RGLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284


>gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
 gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
          Length = 275

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +VID    H ++T + I  +S       FDQ++LI    +A+ D  
Sbjct: 1   MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +    +     +T  G L+ + + D  I+V+MG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IPL    +     RF+   VN    +    VSMGNPHA+  V  D+    +A
Sbjct: 121 IPRHAPAEIPLLAEEES----RFYTVLVNETE-KAFGAVSMGNPHAVIQVT-DVKTAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H  F E VN+   +V   + + LR +ERG   T ACGS ACA+VV     + 
Sbjct: 175 ELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHNL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VSV + GG L I W      V MTG A   +EG++ +
Sbjct: 235 LDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275


>gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12]
          Length = 275

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHWLIQV-DDVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
          Length = 283

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   KTLKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V DD+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +    V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
 gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
          Length = 292

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      + T +   A++        DQ++L+       VD 
Sbjct: 1   MKLHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDM
Sbjct: 61  RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P             D  H   +N         VSMGNPHA+  V DD   
Sbjct: 121 GAPVFEAARLPFLPEGLPTRTQGDDTQHALQINGR-TEWLSTVSMGNPHAVQIV-DDTEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285
                +  V V   GG L I W  +   V MTG A   +EG LD+   K
Sbjct: 239 RRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDLDALK 287


>gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 275

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 13/283 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN  +V+D      N+    I  L+        DQ++L+   +    D 
Sbjct: 1   MKLKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLADRHFGIGCDQLLLVEKAE-GQADF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VR++      +      ET+ G++  +   +G+I+V+M
Sbjct: 60  RYRIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVNM 119

Query: 121 GEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G+PI + + IP       +         PV          +SMGNPHA+  V  D+    
Sbjct: 120 GKPIFEPERIPFIADQCALTYQLELPDSPV------TICALSMGNPHAVRVVT-DIARAP 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A+ G L+ +H  F   VN+   +V     + LR +ERG G T ACG+ ACA+VVA   L
Sbjct: 173 VATEGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGITL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +R V V   GG L I W      V+MTG A   +EG++++
Sbjct: 233 GLLDRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275


>gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
          Length = 317

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 23  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 81

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        + SFT  T  G++V +   DG +
Sbjct: 82  TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 141

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P   S +K +        V      N   VSMGNPH I F +    
Sbjct: 142 KVDMGTPILKAQDVPTKLSGNKGEA-VVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 200

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 201 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 260

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 261 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 308


>gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
 gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
          Length = 278

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D   
Sbjct: 5   LQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I       +    VVSMGNPH +  V D++   ++  
Sbjct: 125 PDFEPQNVP----FRAVKAEKTYIIRAQERTV-FAGVVSMGNPHCVVQV-DNVQTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAVGVGQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W    + ++MTG A   ++G + I
Sbjct: 239 ANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278


>gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max]
          Length = 359

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +   S   A+     +     D ++ +       
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPGIS-G 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    +P     +K D        V    + +   VSMGNPH + F  +   
Sbjct: 190 RVDMGEPILKXXDVPTKLHANK-DNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
 gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
          Length = 370

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 9/288 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           ++  + F KM G GN  +V+D      ++T+  + AL+        DQ++L+       V
Sbjct: 58  ENVKLKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALANRHFGVGADQLLLVEKPTVEGV 117

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + V
Sbjct: 118 DFRYRIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIV 177

Query: 119 DMGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ D +L+P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD  
Sbjct: 178 DMGTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAE 236

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 237 AFPVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAG 296

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281
                 +  V V   GG L I W        + M G A   +EG++++
Sbjct: 297 IRRGLLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL 344


>gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
 gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
          Length = 284

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 143/287 (49%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  ++ID R   + +     A+     +     D ++        + D  
Sbjct: 3   IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTS-NTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRD 113
           +RI N D SE Q CGNG+RC+ +F+     R           S+  +T+ G++  +   D
Sbjct: 62  MRIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILAD 121

Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           G + VDMG+P L    IP  L ++ +K+      +   +         VSMGNPH I FV
Sbjct: 122 GQVKVDMGQPRLLAVEIPTTLTKADEKVVNVPLSVAEQSWKVT----CVSMGNPHCITFV 177

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E D+    LA  G     HP F E  N    +V   + L +R WERG G T ACG+ ACA
Sbjct: 178 E-DVAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACA 236

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            VVA       +R+V+V++ GG L+IEW  +  ++M+G A++ + G+
Sbjct: 237 VVVAGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQ 283


>gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12]
 gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12]
          Length = 287

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 7/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             V F KM G GN  +V+D       + +  +  L+        DQI+L+       VD 
Sbjct: 1   MQVAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLADRHFGVGADQILLVEAAPSPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VDM
Sbjct: 61  GYRIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D   +P  A        D +   P++         V+SMGNPHA+  V DD+   
Sbjct: 121 GAPVFDLPRVPFEAHGLRPRQVDGWEQWPLDLAGATAWVSVLSMGNPHAVQRV-DDVDTA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA   
Sbjct: 180 PVLRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
                 AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 240 HGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284


>gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
 gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
          Length = 277

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 144/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++          +A   LS        D +++I   + A  D  +
Sbjct: 1   MKFTKMHGLGNDYVYVNCFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       + + + ET+ G+    L  K+ +   I V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L  + IP+    D +  +   +    +        VSMGNPHA+ FV DD+   
Sbjct: 119 DMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMTG----VSMGNPHAVIFV-DDVKGL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L + G     H  F + VN   ARV   E++++R WERG G T ACG+ ACA  VA   
Sbjct: 174 ELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVACIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG LLIEW  + + V+MTG A   ++G++ I
Sbjct: 234 NGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277


>gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 274

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLAPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++M G+A   ++G + +
Sbjct: 234 LDNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDGFIKL 274


>gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
 gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
          Length = 282

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
            + F+KM G+GN  +VID      +  +  I           FDQ++++   Q   VD  
Sbjct: 3   TLKFSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFG 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC V+F+T +    ++    +T +GI+  + N DG ++V+MG
Sbjct: 63  YRIFNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMG 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P    + +P      +      +I  V  L      +V+MGNPHA+ +V  ++    + 
Sbjct: 123 QPRFAPEDVPFVLRSGEQVGAVSYI-VVKDLDSAEMSLVNMGNPHAVMWV-GNVDDAPVE 180

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S+G  L  H  F + VN+   +V     + LR +ERG G T ACG+ ACA+VVA   L  
Sbjct: 181 SWGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRLGA 240

Query: 242 T--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 V V + GG L I W + + V M G A   + G+L 
Sbjct: 241 VASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGELT 281


>gi|255645761|gb|ACU23373.1| unknown [Glycine max]
          Length = 359

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +   S   A+     +     D ++ +    +  
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPGIN-G 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N D SE + CGNG+RC  +F   L +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEP+L    +P     +K D        V    + +   VSMGNPH + F  +   
Sbjct: 190 RVDMGEPVLKALDVPTKLPANK-DNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +V A+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
 gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
          Length = 287

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 140/284 (49%), Gaps = 11/284 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A+           D ++      D + D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+T    +     ++   T  G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   S + +      +     +   +   VSMGNPH I FV DD+    
Sbjct: 122 MGLPRLLAAEIPTTLSENNLKVIDVPLEVAGQVL--SVTCVSMGNPHCITFV-DDVASVP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L   
Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFP 282


>gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
 gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
          Length = 274

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I       +    VVSMGNPH +  VE D+   ++  
Sbjct: 121 PDFEPQHVP----FRAIKAEKTYIIRAIERTVLCG-VVSMGNPHCVIQVE-DVDTAEVEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           N  V V + GG L I W      ++M G A   +EG + +
Sbjct: 235 NSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274


>gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 279

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 139/286 (48%), Gaps = 12/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M  + + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  
Sbjct: 1   MIGNNMQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + 
Sbjct: 61  LDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVR 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+ 
Sbjct: 121 VNMGGPIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DIN 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V   
Sbjct: 174 LTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 IMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
 gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
          Length = 276

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVYFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G ++     D  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I  V    L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FRAKQKEKTYIMRVGEKTLFCG-AVSMGNPHV-VTVVDDVDSAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L I W      ++MTG A   ++G+L 
Sbjct: 238 ENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQLS 275


>gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4]
          Length = 277

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++        ++ +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKVENPAEVSIKVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118
            I N DGSE + CGNG+RCV +++           T ET  G+L      +  +   + V
Sbjct: 59  HIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPI     IP+    DK+  +   +G        N   VSMGNPHA+ FV DD   +
Sbjct: 119 DMGEPIHTPAEIPVVADGDKVIDEPIEVGGK----TWNMTCVSMGNPHAVVFV-DDTASF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L ++G L   H  F +  N    ++ S    ++R WERG   T ACG+  CA V+A   
Sbjct: 174 PLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
             KT   V V + GG L IE+  ++NHVFMTG A + + G++++
Sbjct: 234 NGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277


>gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437]
          Length = 280

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 14/287 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F KM G+GN  +V+            A            D ++ +   +    D  +
Sbjct: 1   MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFLLPSRAG--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISV 118
           RI+N DGSE + CGN +RCV ++   R+   +K    ET  G+   +   DGS    I V
Sbjct: 59  RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL+   +P+A   +++      IG  +  F      VSMGNPHA+ FV DD   +
Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIGEESFRFT----AVSMGNPHAVIFV-DDAAAF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + ++G  L  HP+F    N+    V S   L++R WERGVG T ACG+ ACAS+VA+  
Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
               +R   V++ GG L IEW + ++ V+MTG A+  +EG+ +  +G
Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWNEGSG 280


>gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
 gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
          Length = 299

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 9/287 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D + +P A    +   +    + P++ +   R   VVSMGNPHA+  V DD+  +
Sbjct: 121 GTPVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
               +  V V   GG L I W     +  + M G A   +EG++++ 
Sbjct: 240 RGLLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286


>gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
 gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
          Length = 280

 Score =  347 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 139/282 (49%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63
           + F KM+  GN  + +D      +        +S        D ++LI    D    D  
Sbjct: 1   MRFTKMQAAGNDYVYMDTLKAPISSPEALARRISDRHFGVGSDGLILICPPSDPGEADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN----RDGSIS 117
           +R+ N DGSE + CGNG+RCV +++       ++    ET+ G+L  + +    +  +++
Sbjct: 61  MRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K IP++   +        +       + N   VSMGNPHA+ F+   + +
Sbjct: 121 VDMGEPRLAPKDIPVSGPGEDFINRPLRVQGR----VWNVTAVSMGNPHAVVFMHG-IDN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL+  G     HP+F    N     V     L +R WERG G T ACG+ ACASVVA+ 
Sbjct: 176 LDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAAV 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
               T R V +K+LGG L IEW +  NHVFMTG A   + G+
Sbjct: 236 LTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGE 277


>gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01]
 gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01]
          Length = 276

 Score =  347 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 274

 Score =  347 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   +P  A  F+K    R  +  V         VVSMGNPH +  VE D+    + 
Sbjct: 121 PIWEPAQVPFTANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQVE-DINLTPVN 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V        
Sbjct: 174 ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
 gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
          Length = 276

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
 gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
          Length = 287

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 9/286 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N++   + AL+        DQ++L+       VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALADRHFGVGADQLLLVEKPTVEGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ + + +P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD+  +
Sbjct: 121 GAPVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281
               +  V V   GG L I W    ++  + M G A   ++G++++
Sbjct: 240 RGLLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIEL 285


>gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
 gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
          Length = 276

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            ++ F KM G GN  +V+D+      +    I  L+        DQ++++       VD 
Sbjct: 1   MLLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+       ++  + ET  GI+  +   +  + VDM
Sbjct: 61  RYRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PIL+ + IP    FD  +    +   V    L     +SMGNPH++  V DD+   ++
Sbjct: 121 GAPILEPQKIP----FDAPEEATSYPLQVEENVLEIG-ALSMGNPHSVCRV-DDVDSINI 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP F +  N    ++ S   + LR +ERGVG T ACG+ ACA+VV      
Sbjct: 175 EHLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVYGLSRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V+V + GG L I W      V MTG     +EG + I
Sbjct: 235 WLRDTVTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276


>gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
 gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
          Length = 278

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K  G+GN  ++ID R     I     AI     +     D ++          D  +R
Sbjct: 5   FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVK-QTDYTMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSE + CGNG+RC+ +F+       +  +   T  GI+V +   DG ++VDMG+P
Sbjct: 64  IFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123

Query: 124 ILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            L    IP  LA + DK+      +G  +         VSMGNPH I FVE D+   DLA
Sbjct: 124 RLLASEIPTTLANADDKVVDQLLEVGGKSWFVT----CVSMGNPHCITFVE-DVTAIDLA 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G     +P+F E  N    +V S + + +R WERG G T ACG+ ACASVVA      
Sbjct: 179 KIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQN 238

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             R V+V++ GG L IEW   +  ++MTG A+K + G +
Sbjct: 239 NERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277


>gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 287

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN   VID      +  +  I A         FDQ++L+        D 
Sbjct: 2   AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++VDM
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L    IP   +    +    H    N   + +  +V+MGNPHA+  V DD     +
Sbjct: 122 GKPRLRPSEIPFLPAEGAAEDALRHDIAANGAAV-SVGLVNMGNPHAVLTV-DDTDAAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  L  HP F E  N+   +V     + LR +ERGVG T ACG+ ACA+VV    L 
Sbjct: 180 ATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHGVRLG 239

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  V V + GG L I W +   V MTG A+  ++G + 
Sbjct: 240 LLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVIS 281


>gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
 gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
          Length = 283

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 13/286 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            + F KM G+GN  +V++       I       +         D I+L+        D  
Sbjct: 3   KMKFTKMHGLGNDFIVVNGFKEDVRIIFKKAEKICDRHVGIGADGILLVLPSDK--CDLK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGIL----VAKENRDGSIS 117
           +RIIN DGSE   CGNG+RC  R+      + + S T ET+ G++    + K++R  S+ 
Sbjct: 61  MRIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVR 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG   L  K IP+A + ++   D   I   + +F      VSMGNPH + FV DD+  
Sbjct: 121 VDMGCYSLQKKDIPVAGNPNEEAVD-LEISVDDRVF--KFTGVSMGNPHCVIFV-DDVES 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  FG ++ +HP+F +  N+        + L +R WERG GLT ACG+ ACAS VA+ 
Sbjct: 177 FPVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAY 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                   V+V + GG L IE   N  V+MTG A + + G +D+  
Sbjct: 237 KKGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDLSA 282


>gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
          Length = 387

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 11/289 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D 
Sbjct: 100 KLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADF 159

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 160 KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 219

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+   + +P  A   D     R  + P+      R    VSMGNPHA+  V DD   Y
Sbjct: 220 GAPVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVV-DDAEAY 278

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 279 PVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIR 338

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 339 RGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387


>gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
 gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
          Length = 270

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D R        D I A S       FDQ++ I D +D   DAF+R+ N 
Sbjct: 1   MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----GSISVDMGEPIL 125
           DG  V++CGN +RCV  +L      K+   +T+ G   A+  R     G+ S+DMG+P L
Sbjct: 59  DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPL+   +    +   +GP +      P  VSMGNPH +FFV DD+   D+ + G+
Sbjct: 119 DWRDIPLSEEMNTAKLE-LKVGPYDAPLYHTPVAVSMGNPHCVFFV-DDIATVDVKATGS 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F E VN+  A++   +++ +R WERG G+T ACG+ ACA++VA+     T RA
Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG L I W +N+HV MTG  + E+EG L
Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270


>gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR]
 gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR]
          Length = 277

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  ++I+    ++  N    A+   +       D ++ I   + A  D  
Sbjct: 1   MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETA--DIQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----GSIS 117
           +RI N DGSE + CGN +RC  R+L     +K+++   ET+ GI + +   +      + 
Sbjct: 59  MRIFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L+   IP+     K+  +   +         N   VSMGNPH + FV D+   
Sbjct: 119 VDMGEPELERGRIPMLGGPGKVVAEPLPVNG----STYNVTCVSMGNPHCVIFV-DNAED 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +A+ G  +  H  F    N+   +V +   + +R WERG G+T ACG+ ACAS VA+ 
Sbjct: 174 YPVAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAH 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R V V + GG L I W  +NHV+M G A   ++G 
Sbjct: 234 LNGFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKGT 274


>gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
 gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
          Length = 278

 Score =  347 bits (890), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 14/285 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALS-TDDNTHFDQIMLIHDFQDAS 59
             + F KM G+GN  +VI+      ++T      I  L+       FDQ++++   ++  
Sbjct: 1   MKLQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DG EV+ CGNG RC  RF+       + +   ET RGI+      +G +S
Sbjct: 61  -DFRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVS 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P  +   IP   +  +M      IG            VS+GNPHA+  +  D+  
Sbjct: 120 VNMGVPQFEPAEIPFQAA-QRMPVYPLQIGDK----TIEISAVSIGNPHAVQIIP-DIDL 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G  +  HP+F E VN    ++     + LR +ERG G T ACG+ ACA+VV   
Sbjct: 174 APVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAAVVCGI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                +  V V M GG L I W   +  V+MTG A   +EG +D+
Sbjct: 234 LRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278


>gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
 gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
          Length = 287

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V D      ++T++    ++        DQI+++   Q+ + D 
Sbjct: 1   MKLKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG R   RF+T  +   R     ET  GI+  +  ++G+++V+M
Sbjct: 61  RYRIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPV-----NHLFLRNPFVVSMGNPHAIFFVEDD 174
           G+P      IP  A            I P+       L      +VSMGNPHA+  VE+ 
Sbjct: 121 GKPEFSPDRIPFDASGLKGKPAGDDMIWPLALELPKGLQTIEVSLVSMGNPHAVQIVEN- 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  H  F    N     + +  S+ LR +ERG G T ACG+ ACA+VV
Sbjct: 180 VDKAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           A       +  V+VK  GG L I W+ N H V MTG A   + G++D+
Sbjct: 240 AGIRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287


>gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
 gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
          Length = 281

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 16/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  ++++     G  D+  + A            D ++L+ D      D 
Sbjct: 1   MHFTKVHGLGNDFILVNAGMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLDS--GVADV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
            +RIIN DGSE + CGN +RCV ++L     +++     ET+ GI+V +      R  ++
Sbjct: 59  RMRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L+ + IP+  +  ++  +   +             VSMGNPH + FV  DL 
Sbjct: 119 RVDMGAPRLERQEIPMLGTPGQVVNEPLQVNGQTFKIT----AVSMGNPHCVIFVP-DLS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G  +  HP F    N+   +V S   + +  WERG G T ACG+ ACA   A 
Sbjct: 174 VIPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACAVATAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                T R+V+V + GG L IEW DN  ++MTG A++ + G+  +  G
Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281


>gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688]
 gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688]
          Length = 277

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F KM+GIGN  +VID      ++T D I A+S        DQ++++          
Sbjct: 2   MKLEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAISDRHFGVGCDQLLIVEHATTPEAAF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+  +   +++    ET RG++  +   +G ++V+M
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P    F+       +   + H  +      SMGNPHA+  V D++    +
Sbjct: 122 GPPSFLPADLP----FEAETIQSLYPLQLAHETVEVAIA-SMGNPHAVQLV-DNVDTAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+   L 
Sbjct: 176 AEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                V V   GG L I W   +  V+MTG A   + G + +
Sbjct: 236 HLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277


>gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis]
          Length = 375

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           +  ++ F K  G+GN  +++D R   +       AI     +     D ++      +  
Sbjct: 87  KKDVLHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVN-G 145

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC+  F+         +S+   T  G++V K   DG +
Sbjct: 146 TDYSMRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKV 205

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+PIL    IP      +         PV+   +     VSMGNPH + F   D  
Sbjct: 206 MVDMGQPILTAANIPTKLPKREDGAVVKAELPVDGK-IWIVTCVSMGNPHCVTFSRKDCE 264

Query: 177 HYDL-----ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             D+        G L   H MF    N    ++ S   L +R WERG G T ACG+ ACA
Sbjct: 265 VLDVNSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAGACA 324

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            VVA+    ++ R   V + GG L IEW++ +NHV+MTG A+K + G
Sbjct: 325 LVVAAVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371


>gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
 gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
          Length = 292

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 156/289 (53%), Positives = 196/289 (67%), Gaps = 1/289 (0%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+S+ V FAKM G+GN I+VIDMRG  D +TS+A  AL++ D T FDQIM IHD     V
Sbjct: 1   MEST-VPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGV 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  I I+N DGS  Q+CGNG RCVV+ L S   RKSFTF+T+ GIL A+E+ DG ISVDM
Sbjct: 60  DYRIDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P   W  IPLA  F    R    IGP++   L +P  V++GNPHA+F+V+DD++ YDL
Sbjct: 120 GRPEFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDL 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG LL  HP+F E  N+SIARV    +LD+RTWERG GLT ACGSAACA+ V++    
Sbjct: 180 ERFGPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTG 239

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           +T R V+V + GG L IEW +NNHV MTG A+ E+ G++D  TG W   
Sbjct: 240 RTGRTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAWQAD 288


>gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15]
          Length = 292

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      + T +   A++        DQ++L+       VD 
Sbjct: 1   MKLHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDM
Sbjct: 61  RYRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P            RD  H   +N         VSMGNPHA+  V DD   
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDTQHALQINGR-TAWLSTVSMGNPHAVQVV-DDAQA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
                +  V V   GG L I W  +   V MTG A   +EG LD+   K
Sbjct: 239 RRGLLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
 gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
          Length = 274

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/281 (35%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L   + R      T +G +V     + ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  +  V         VVSMGNPH +  V DD+    + 
Sbjct: 121 PIWEPAKIPFIANKFEKNYILRTDLQTV------LCGVVSMGNPHCVLQV-DDIEQATVH 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F E  N+   ++     + LR +ERGVG T ACGS ACA+V        
Sbjct: 174 QLGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAVGIMQGV 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            +  V V + GG L IEW      ++MTG A   ++G + +
Sbjct: 234 LDANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDGFIKL 274


>gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
 gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
          Length = 276

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 144/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+G+GN  +V+D       +    I  L+       FDQ++++   Q    D   
Sbjct: 3   MPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFHF 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGNG R V +++  +    ++     T    + A    +G +++DMG+
Sbjct: 63  RIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IPL R  +K        G +++        VSMGNPH +  V D++    + +
Sbjct: 123 PRLEPAQIPL-RFAEKQTLYSIDAGGISYKV----GAVSMGNPHCVLKV-DNVEKAPVQT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L++H  F    N    ++   +++ LR +ERGVG T ACG+ ACA+VV +     T
Sbjct: 177 VGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGLT 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W  + + VFM+G AK  +EG+++I
Sbjct: 237 DDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276


>gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
 gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
          Length = 276

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDNTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG     ++G+L 
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275


>gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51]
 gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 287

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/284 (35%), Positives = 145/284 (51%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID  +G    +    +    L         D ++++     A  D
Sbjct: 5   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS---- 115
           A +RI+N DGSE + CGNG+RC  R++     + +     ET+ GIL  + +  G     
Sbjct: 63  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVE D 
Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVE-DY 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281


>gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116]
 gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116]
          Length = 276

 Score =  346 bits (888), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     R S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
 gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
          Length = 283

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 136/287 (47%), Gaps = 16/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61
             V+F K +G+GN  ++ID R      +T D A+     +     D ++     +    D
Sbjct: 1   MRVEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPE-GDTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSI 116
             +RI N DGSE + CGNG+RC+ RFL     +      ++   T+ G +      DG +
Sbjct: 60  YTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLV 119

Query: 117 SVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            VDMG P L  + IP  L    D +      +   +         VSMGNPH I FV DD
Sbjct: 120 KVDMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWPVT----CVSMGNPHCITFV-DD 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L   D  + G     HP+F + +N    +V   + L +  WERG G T ACG+ ACA +V
Sbjct: 175 LEAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           A     K+    ++++ GG L I W  +   VFMTG A+K + G  +
Sbjct: 235 AGVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTGIYE 281


>gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
 gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
          Length = 283

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++++ F+KM+G+GN  +VID       ++++ I   +       FDQ++++ +     VD
Sbjct: 2   TNLLKFSKMQGLGNDFMVIDGTQETITLSTEEIRFWANRYFGVGFDQLLMVENSAQGDVD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEVQ CGNG RC  +F+  +    +     ET  G++V      G + V+
Sbjct: 62  FRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYITDQGWVRVN 121

Query: 120 MGEPILDWKLIPLARSFD------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG P    + +P     +       +D +RF IG            VSMGNPHA+  V  
Sbjct: 122 MGAPNFLPEALPFDMPLESEQYELDVDGERFEIG-----------AVSMGNPHAVLRVA- 169

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL    +A  G  +  H +F E VN+  A     + + LR +ERG   T ACG+ ACA++
Sbjct: 170 DLGAAPVAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAETLACGTGACAAM 229

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKL 279
           V    L + +  V+V + GG L IEW+ +    V+MTG A   +EG++
Sbjct: 230 VVLRNLGEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277


>gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T]
 gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T]
          Length = 277

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID      ++T   + A++        DQ++++       VD 
Sbjct: 1   MKLRFTKMHGLGNDFVVIDATRAPVDLTPARVKAIADRHFGVGCDQLLVVEPAARPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VRF+  +    +     ET  GI+  +   DG ++VDM
Sbjct: 61  RYRIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    +P     D + +    +G            VSMGNPHA+  V  D+    +
Sbjct: 121 GVPELAPAKVPFVSDSDAVVQ-PLQVGG----DTVAITAVSMGNPHAVQVVA-DVDAAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  + +H  F   VN    +V     + LR +ERG G T ACG+ ACA+VVA     
Sbjct: 175 VEQGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V V   GG L I W      V MTG A   +EG++++
Sbjct: 235 LLETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMEL 276


>gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
 gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
          Length = 277

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 102/284 (35%), Positives = 154/284 (54%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D      DN +  +            D ++LI     A  D  +
Sbjct: 1   MKFTKMQGLGNDYIYVDCTKNIIDNPSVVSKKVSDRHFGIGSDGLVLIMKSDIA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +++       +K+ T ET+ GI    L  ++N+   + V
Sbjct: 59  RMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+ K IP+    D+   +   +   N+        VSMGNPHAI +V DD   +
Sbjct: 119 DMGEPILESKQIPVDSEKDRFISESVEVDGYNYKVT----AVSMGNPHAITYV-DDTASF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  H +F + +N     V    +L +R WERG G T ACG+ A A +VAS  
Sbjct: 174 PLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I
Sbjct: 234 NGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277


>gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
 gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
          Length = 276

 Score =  345 bits (887), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDNTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG     ++G+L 
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275


>gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
 gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
          Length = 287

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T   + AL+        DQ++L+       VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ + + +P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD+  +
Sbjct: 121 GLPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN---NHVFMTGEAKKEWEGKLDI 281
               +  V V   GG L I W  N     + M G A   ++G++++
Sbjct: 240 RGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285


>gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
 gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
          Length = 300

 Score =  345 bits (886), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 9/286 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T + + AL+        DQ++L+       VD 
Sbjct: 14  MKLKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALADRHFGVGADQLLLVEKPTVDGVDF 73

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+       ++S   +   G +      +G + VDM
Sbjct: 74  RYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLVDM 133

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ + + +P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD+  +
Sbjct: 134 GSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVV-DDVEAF 192

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A   
Sbjct: 193 PVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIR 252

Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281
               +  V V   GG L I W    ++  + M G A   ++G++++
Sbjct: 253 RGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIEL 298


>gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 286

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 16/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             ++F KMEGIGN  + ID       ++ + I  LS        D ++ I +        
Sbjct: 7   MKINFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--F 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115
            + + N DGS  + CGNG+RCV +F+      K +  T ET +G+L          +   
Sbjct: 65  QMDMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEM 124

Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMGEPIL   L+P+    D+ +      +    + F      VSMGNPH + +V DD
Sbjct: 125 VTVDMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  V
Sbjct: 180 ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS    KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 240 ASILNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286


>gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
 gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
          Length = 300

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       +D 
Sbjct: 1   MRIRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC +RF+       +     +T+ G++  +   DG ++VDM
Sbjct: 61  QYVIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVDM 120

Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G PI +   +P       A+     ++    +G      + +  V+SMGNPHA+  V D+
Sbjct: 121 GAPIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVV-DN 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G  +  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VV
Sbjct: 180 VDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           A   L      V V+  GG L IEW  +   V MTG A   +EG +D+ 
Sbjct: 240 AGIRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288


>gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
 gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
          Length = 296

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       VD 
Sbjct: 5   MQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAEGVDF 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G ++VDM
Sbjct: 65  EYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVDM 124

Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P LD   +P       A +     +    +             VSMGNPHA+  V DD
Sbjct: 125 GAPQLDPAKVPFTNDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV-DD 183

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+VV
Sbjct: 184 VDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGACAAVV 243

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 280

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 16/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             ++F KMEGIGN  + ID       ++ + I  LS        D ++ I +        
Sbjct: 1   MKINFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--F 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115
            + + N DGS  + CGNG+RCV +F+      K +  T ET +G+L          +   
Sbjct: 59  QMDMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEM 118

Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMGEPIL   L+P+    D+ +      +    + F      VSMGNPH + +V DD
Sbjct: 119 VTVDMGEPILKPSLVPIVWKGDEPVINQVIEVQGKQYHFT----AVSMGNPHCVIYV-DD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  V
Sbjct: 174 ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS    KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 234 ASILNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280


>gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218]
          Length = 276

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  ++       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRMADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G +V     D  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I  V    L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPSKIP----FRAKQAEKTYIMRVEEQTLFCG-AVSMGNPHV-VTVVDDVTTANVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L I W      ++MTG A   ++G+L 
Sbjct: 238 DTVTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQLS 275


>gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB]
 gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB]
          Length = 292

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 152/286 (53%), Gaps = 15/286 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V F KM G+GN  + I+         ++    +S        D ++LI D + A  D 
Sbjct: 14  KVVKFTKMHGLGNDYIYINAVLEDIKNPNEFSKFVSDRHFGIGSDGLVLILDSKIA--DF 71

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE + CGN +RCV +F+       +K  T ET+ G+ V +   +G     +
Sbjct: 72  KMRMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVVLV 131

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP L+   IP+      +  +       N  F      VSMGNPHA+ ++E D+ 
Sbjct: 132 KVDMGEPTLEALKIPVISDKYPVINETIDSNGYNFKFT----CVSMGNPHAVTYIE-DVD 186

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           +++L   G L   H  F +  N+    V + E+L +R WERG G T ACG+ ACA +V+S
Sbjct: 187 NFELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGACAVLVSS 246

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                + R  +VK+LGG L++EW + NNHV+MTG A K +EGK+ +
Sbjct: 247 VLNGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292


>gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44]
 gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44]
          Length = 296

 Score =  345 bits (885), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       VD 
Sbjct: 5   MQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAEGVDF 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G ++VDM
Sbjct: 65  EYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRVTVDM 124

Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P LD   +P       A +     +    +             VSMGNPHA+  V DD
Sbjct: 125 GAPQLDPAKVPFTTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQLV-DD 183

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+VV
Sbjct: 184 VDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGACAAVV 243

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601]
 gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601]
          Length = 292

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T      L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VDM
Sbjct: 61  EYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDM 120

Query: 121 GEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P+LD   +P      +      + +    +             VSMGNPHA+  V DD
Sbjct: 121 GRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQLV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VV
Sbjct: 180 VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A   L   +  V V   GG L I W     + VFMTG A   +EG++DI 
Sbjct: 240 AGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289


>gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
 gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
          Length = 292

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T      L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VDM
Sbjct: 61  EYLIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDM 120

Query: 121 GEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P+LD   +P      +      + +    +             VSMGNPHA+  V DD
Sbjct: 121 GRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQLV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VV
Sbjct: 180 VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A   L   +  V V   GG L I W     + VFMTG A   +EG++DI 
Sbjct: 240 AGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIP 289


>gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357]
          Length = 269

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGEP  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P    F     ++ +I       +    VVSMGNPH +  V DD+    + + G +L
Sbjct: 121 SAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V            V 
Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 269


>gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
 gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
          Length = 278

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A            D ++     Q+   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ +F+        +  +  +T+ G++  +   DG + VDM
Sbjct: 62  MRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP        DR    +             VSMGNPH I FVE D+    L
Sbjct: 122 GIPRLLAAEIPTTLESP--DRKVVELPLEVAGQSWLVTCVSMGNPHCITFVE-DVSAIAL 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L   H +F +  N    ++   + + +R WERG G+T ACG+ ACASVVA     
Sbjct: 179 ETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAGVLAG 238

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           K +R  +V++ GG L IEW   +  ++MTG A + + GK+
Sbjct: 239 KCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278


>gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
 gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
          Length = 282

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F KM G+GN  +VID            + +D I  L        FDQ++++   + A 
Sbjct: 3   LRFTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSAD 62

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI+N DGSEV  CGNG RC  RF+  +    ++    ET  G +      D  ++
Sbjct: 63  ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP+     K + D + +  V+         V +GNPH    VE+ + +
Sbjct: 123 VDMGAPRWAPDAIPMTA---KAEADSYFL--VSGTQAWEVGAVGLGNPHCTLLVEN-VDN 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G LL  H  F E VN+   ++ S   + LR +ERG G T ACGS ACA+VV   
Sbjct: 177 APVESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + AV+V + GG L + +     + MTG A   ++G ++I
Sbjct: 237 RRGWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280


>gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 307

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  +V+D      + T +   A++        DQ++L+       VD
Sbjct: 15  AMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVD 74

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VD
Sbjct: 75  FRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVD 134

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P            RD  H   VN         VSMGNPHA+  V DD  
Sbjct: 135 MGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDR-TAWLSTVSMGNPHAVQVV-DDTE 192

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
                 +  V V   GGGL I W  +   V MTG A   +EG LD+   K
Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302


>gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424]
 gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424]
          Length = 281

 Score =  344 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + + S   A+           D ++ +        D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTS-QTDYQ 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+    K     KS+  +T+ G++  +      ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVTVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L    +K+      +   + L       VSMGNPH I FVE D+  
Sbjct: 122 MGLPRLLGSEIPTTLVSRTEKVIDQPIEVAGQSWLVT----CVSMGNPHCITFVE-DVKS 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G     H  F +  N     V   + L +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              K++R  +V++ GG L I W + + HV+MTG AK+ + G  ++
Sbjct: 237 LTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYEM 281


>gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301]
 gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301]
          Length = 276

 Score =  344 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 12/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +VI+       +T++ I  L+       FDQ++L+   + A  D   
Sbjct: 5   LHFTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC VRF+  +    +   + ET  GI+  K   +G ++V+MG 
Sbjct: 63  RIFNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    +P             ++  V    +     VSMGNPHA+  V DD+    + +
Sbjct: 123 PRLSPSEVPFIADAAA----NSYVLEVADQQI-TISAVSMGNPHAVQIV-DDVEIAPVVA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VVA   L + 
Sbjct: 177 LGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQLGRL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
              V V   GG L I W   N  V MTG A   + G ++I
Sbjct: 237 QSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276


>gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 289

 Score =  344 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 213/288 (73%), Positives = 238/288 (82%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ SMV FAKMEGIGNKILV+DMR   DNIT +AIN LST+DN  FDQIM IH+ Q+   
Sbjct: 1   MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM
Sbjct: 61  DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDW+ IPLA+ FD  D  +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL
Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           + FG LL  + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS    
Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K
Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288


>gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
 gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
          Length = 292

 Score =  344 bits (884), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      + T +   A++        DQ++L+       VD 
Sbjct: 1   MKLHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDM
Sbjct: 61  RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ +   +P        +++ D        +        VSMGNPHA+  V DD   +
Sbjct: 121 GAPVFEAARLPFLPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIV-DDTEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA   
Sbjct: 180 PVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285
               +  V V   GG L I W      V MTG A   +EG LD+   K
Sbjct: 240 RGVLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDLDALK 287


>gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804]
 gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii]
          Length = 304

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 137/287 (47%), Gaps = 13/287 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D      +IT +   AL+        DQI+L+        D   R
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQAIDITPERARALADRHFGIGADQILLVEPPTHPEADFRYR 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDMG  
Sbjct: 70  IFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDMGVT 129

Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             D   +P         A+  D + +      P           V++ NPHA+  V DD+
Sbjct: 130 RFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQV-DDV 188

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A+ G L+ +HP F+  VN    +V    S+ LR +ERG G T ACG+ ACA+V A
Sbjct: 189 DAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAAVAA 248

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                  +  V V   GG L ++W+   H+ MTG A   + G++DI 
Sbjct: 249 GIRRGLLDSPVRVHTRGGTLTVDWN-GEHLRMTGPATSVFTGQVDID 294


>gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
 gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
          Length = 283

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 101/284 (35%), Positives = 145/284 (51%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID  +G    +    +    L         D ++++     A  D
Sbjct: 1   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS---- 115
           A +RI+N DGSE + CGNG+RC  R++     + +     ET+ GIL  + +  G     
Sbjct: 59  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVE D 
Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEFT----AVSMGNPHCVLFVE-DY 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277


>gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
 gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
          Length = 282

 Score =  344 bits (883), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++               +S        D +++I+  + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNCFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L   LIP+    +K+  +   +    +    +   VSMGNPH + +V DD+ + 
Sbjct: 119 DMGKPELKSDLIPIISENEKVIDEPIEVDGQVY----HMTGVSMGNPHTVIYV-DDVKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H  F + +N          ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 DLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            + T+  V+VK+LGG L IEW    NHVFMTG AK  ++G +DI
Sbjct: 234 NNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277


>gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
 gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
          Length = 280

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/280 (38%), Positives = 155/280 (55%), Gaps = 10/280 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D R      ++  + A         FDQ++ I     AS DAF+R
Sbjct: 4   PFLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVDMG 121
           + N DG  V++CGN +RCV  +L           +T+ G   AK      + G +SVDMG
Sbjct: 62  VWNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPL+   +  +R    +GP++      P  VSMGNPH +FFVE D+   D+ 
Sbjct: 122 APRLAWTQIPLSEEMNT-ERLELQVGPIDAPLYHTPCAVSMGNPHVVFFVE-DVAAVDVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+L+  HP+F EGVN+  A+V    ++ +R WERG G+T ACG+ ACA++VA      
Sbjct: 180 RTGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ++R  +V M GG L I W   ++HV MTG  + E+EG+L+
Sbjct: 240 SDRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279


>gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 297

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 136/295 (46%), Gaps = 17/295 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T      L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPADGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    R +   +T+ G++  +   DG ++VDM
Sbjct: 61  EYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTVDM 120

Query: 121 GEPILDWKLIPL-----------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           G P  D   +P            A     +D             + +  VVSMGNPHA+ 
Sbjct: 121 GRPRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHAVQ 180

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            VE D+    +A  G L+ +H  F + VN    ++     + LR +ERG G T ACG+ A
Sbjct: 181 LVE-DVDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGTGA 239

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           CA+V A   L   +  V V+  GG L I W  +    VFMTG A   +EG++DI 
Sbjct: 240 CAAVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294


>gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
 gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
          Length = 285

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++     D+    +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV DD+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE+  + NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114]
 gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114]
          Length = 276

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 139/279 (49%), Gaps = 10/279 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G ++ K   D  I+V+MGEP
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           + +   IP    F     ++ ++  V+   L +   VSMGNPH    V DD+  YD+  +
Sbjct: 124 VFEPNKIP----FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKY 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H  F E VN    ++ S   + LR +ERG G T ACGS AC +V          
Sbjct: 178 GQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLG 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 238 EEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
 gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
          Length = 292

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 99/289 (34%), Positives = 136/289 (47%), Gaps = 9/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      + T +   A++        DQ++L+       VD 
Sbjct: 1   MKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDM
Sbjct: 61  RYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P            RD  H   VN         VSMGNPHA+  V DD   
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNGR-TAWLSTVSMGNPHAVQVV-DDTEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA  
Sbjct: 179 FPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
                +  V V   GGGL I W  +   V MTG A   +EG LD+   K
Sbjct: 239 RRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 274

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +V+D     +    N++  A            D ++L+   + A  D
Sbjct: 1   MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVD 119
             +RIIN DGSE + CGN +RCV R+   +    +K    ET+ GI+  +   +  + VD
Sbjct: 59  FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PIL  + IP+A   + +      +      F      VSMGNPHA+ FV D L   +
Sbjct: 119 MGRPILKPQEIPVAVEEEPV-NIPLEVLGQKFYFT----AVSMGNPHAVIFV-DSLAKIE 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L  +G L+  HP+F    N+    + S   + +  WERG G T ACG+ A A VVA   L
Sbjct: 173 LEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRIL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 V V + GG L I W     V+MTG A+  ++G+  +
Sbjct: 233 GHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGEYFL 274


>gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 307

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 137/290 (47%), Gaps = 9/290 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  +V+D      + T +   A++        DQ++L+       VD
Sbjct: 15  AMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPDVD 74

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VD
Sbjct: 75  FRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVD 134

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P            RD  H   VN         VSMGNPHA+  V DD  
Sbjct: 135 MGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDR-TAWLSTVSMGNPHAVQVV-DDAE 192

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 193 AFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAG 252

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
                 +  V V   GGGL I W  +   V MTG A   +EG LD+   K
Sbjct: 253 IRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302


>gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
 gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
          Length = 276

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  ++ID       IT +    L+        DQ++++    +   D 
Sbjct: 1   MRLRFTKMHGLGNDFVMIDAISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV++CGNG RC   F+  R    +     ET  G+L      D  ++V+M
Sbjct: 61  RYRIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+L    IP     +   +  + +   N         VSMGNPHA+  V D+L  + +
Sbjct: 121 GVPVLAPAQIPFVTPHE---QPEYPLQLDNMEIT--ISAVSMGNPHAVTLV-DNLASFPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  H  F   VN     + S + + LR +ERGVG T ACG+ ACA+VV+     
Sbjct: 175 KTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             +  V+V + GG L I W      V MTG AK  + G++ +
Sbjct: 235 LLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276


>gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
 gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
          Length = 278

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D         +D AI   + +     D ++LI     A V   +
Sbjct: 1   MKFTKMHGAGNDYVYVDCFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHV--RM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +      N+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P L    IP++   D  +  +  +I         N    SMGNPH + FV DD+ 
Sbjct: 119 VNMGKPRLTRGEIPMSGPADARVVSEPLNIL----HTTFNITCASMGNPHCVIFV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++ +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA 
Sbjct: 174 NFQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                T++ +   + GG L +EW ++  ++MTG A + + G++ I
Sbjct: 234 ALNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278


>gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
 gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
          Length = 308

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID      N+    I  L+  +    FDQ++LI       +D 
Sbjct: 30  MRIKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGIDF 89

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV  CGNG RC+  F    +   +   T  T    +  + N D S+ V+M
Sbjct: 90  NYRIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVEM 149

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+   IPL+      +        + H        +S+GNPHA+  V+ D+    +
Sbjct: 150 GIPQLNPAAIPLSAEHQAAEYQ----LELQHGQTATMHAISVGNPHAVLLVK-DVETAPV 204

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G+ ++ HP F    N+   ++ + + + LR +ERG G T ACGS A A+V      H
Sbjct: 205 PTLGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLYH 264

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           + ++ V+V + GG L+I+W D    + +TG A   +EG+L  
Sbjct: 265 RLDKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQLSP 306


>gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
 gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
          Length = 276

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM+G+GN  +V+D+     N+ ++ +  L+        DQ++++       VD 
Sbjct: 1   MLLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLADRHFGIGCDQLLVVETPMQPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  +F+  +    +     ET  GI+      D  I V+M
Sbjct: 61  RYRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P+L+   IP   S                    +   VS+GNPHAI  VE D+    +
Sbjct: 121 GKPLLEPADIPFTASKRANTYTLLVDDEE-----VSISAVSVGNPHAIITVE-DIDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           +  G  +  H  F + VN+   +V S + ++LR +ERG G T ACGS ACA++V+     
Sbjct: 175 SILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAAMVSGQLQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             ++ ++  + GG L +EWH   H V MTG A   +EG++ +
Sbjct: 235 LLDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276


>gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
 gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
          Length = 287

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V++      N+T +    L+        DQI+L+    +  VD 
Sbjct: 1   MKLKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG R   +F+T     ++     ET  GI+     +DGS++VDM
Sbjct: 61  KYRIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDD 174
           G P+ +   IP      + D++  D      ++   ++      VVSMGNPHA+  V DD
Sbjct: 121 GNPVFETSRIPFLTKGLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  H  F E VN     +    S+ LR +ERG   T ACG+ ACA+VV
Sbjct: 180 VNRAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +       +  V+VK  GG L I W    H V M+G A   + G++++
Sbjct: 240 SGIRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287


>gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
 gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
          Length = 292

 Score =  342 bits (879), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T      L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLADRHFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    + +   +T+ G++  +   DG ++VDM
Sbjct: 61  EYVIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRD------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P  D   +P   +                +            VVSMGNPHA+  V+ D
Sbjct: 121 GRPEFDAARVPFDAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGNPHAVQLVQ-D 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  HP F   VN    ++     + LR +ERG G T ACG+ ACA+V 
Sbjct: 180 VDTAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLACGTGACAAVA 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282
           A   L   +  V V+  GG L I W   + + VFMTG A   ++G++++ 
Sbjct: 240 AGIRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289


>gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1]
          Length = 285

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 141/287 (49%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++     D+    +I           D ++ I        D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS--GKADFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV DD+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE+  + NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
 gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
          Length = 291

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 11/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       +D 
Sbjct: 1   MRIPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG+EV+ CGNG RC  RF+  +    + +   +T  G++  + N DG ++V+M
Sbjct: 61  EYLIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMD------RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P+ +   IP   +  +        +    +    H       VVSMGNPHA+  V DD
Sbjct: 121 GAPVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVV-DD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  H  F + VN    ++     + LR +ERG G T ACGS ACA+VV
Sbjct: 180 VDTAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           A   L   +  V V+  GG L I W      V MTG A   + G++++ 
Sbjct: 240 AGIRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288


>gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 281

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID    +  +T + I  +S  +     D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  G+L         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFVS 121

Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+PIL    IP+  +  + +    F I   N  F      VSMGNPH + FV DD  
Sbjct: 122 VNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNLKFT----AVSMGNPHCVIFV-DDCD 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+ +HP+F + +N+    V   +    RTWERG G T ACG+ ACA  VA 
Sbjct: 177 QFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAG 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               K+ + V + + GG L I+W ++ +V MTG AK+ + G++++
Sbjct: 237 NLTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281


>gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
 gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
          Length = 277

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM+ +GN  +VID       ++SD I  LS        DQ++L    Q    D 
Sbjct: 2   TKLRFTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDI 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             R+ N DG EV+ CGNG+RC+ RFL  +   ++     ET  G+ +     DG+I+V+M
Sbjct: 62  RYRVFNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+L+ + IP            + +   +         VSMGNPHA+  V DD+    +
Sbjct: 122 GPPVLEPERIPFR---PTKQASEYALALEDKRI--MIGAVSMGNPHAVLQV-DDIDSAPI 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +FG L+ +H  F + VN+   +V S + + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 176 DTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRLRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             +  V V + GG L+I W   +  V+MTG A   +EG++ +
Sbjct: 236 LLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277


>gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2]
 gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2]
          Length = 276

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 98/283 (34%), Positives = 147/283 (51%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V    +    + +  A+           D ++ I     A  D  +
Sbjct: 1   MEFTKMNGLGNDFIVWYGHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RIIN DGSE + CGN +RC  +++     + R+  T ET+  G+    L  +      + 
Sbjct: 59  RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP       +  +    G     F      VSMGNPH + +VE D   
Sbjct: 119 VDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRFT----AVSMGNPHCVIYVE-DAPS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS 
Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               ++R   V + GG L IEW  D+NH++MTG A+  +EG++
Sbjct: 234 LNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276


>gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
 gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
          Length = 276

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/278 (34%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            +V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
 gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
          Length = 278

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 98/283 (34%), Positives = 150/283 (53%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + I+      +N    AI           D ++LI     A  D  +
Sbjct: 1   MKFTKMEGLGNDYVYINCFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKA--DFTM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       + S + ET+ GI     V K+ +   ++V
Sbjct: 59  DMYNADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDMVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL    +P+    +++  ++  +  V++    +   VSMGNPHA+ FV DD  H+
Sbjct: 119 DMGAPILKADQVPVRSDKEQVIDEKITVAGVDY----HMTCVSMGNPHAVMFV-DDTEHF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H +F   VN    +V    ++ +R WERG G T ACG+ ACA+ VA   
Sbjct: 174 PLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVACVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
             KT+  V+VK+LGG L+I +  +NN V+MTG A+  ++G+ D
Sbjct: 234 NGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276


>gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
 gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
          Length = 292

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM+G+GN  + ++      +N +  A+   + +     D ++LI+  + A  D 
Sbjct: 14  SRMKFTKMQGLGNDYVYVNGFEERIENPSEMAVKVSNRNFGVGSDGLILINPSEKA--DF 71

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            + + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  ++ +   +
Sbjct: 72  EMEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGKVVLV 131

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG PIL    IP+     +       +    +        VSMGNPHA+ F+ DD+ 
Sbjct: 132 RVDMGSPILTPAQIPVIADEAEAVAVPILVDETEY----QMTCVSMGNPHAVIFM-DDIE 186

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           H ++   G     H  F   VN    +V    +  +R WERG G T ACG+ ACA  VA 
Sbjct: 187 HLEIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGACAVAVAC 246

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
                T   V+VK+LGG LLIEW  + N ++MTG A+  ++G 
Sbjct: 247 ILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDGV 289


>gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
 gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
          Length = 302

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 135/288 (46%), Gaps = 10/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       + +     L+        DQI+ +       +D 
Sbjct: 1   MRIRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLADRHFGVGADQILSVRPSPAPGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG+EV+ CGNG RC  RF+  R   ++ S   +T+ G++  +   DG ++VDM
Sbjct: 61  EYVIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVV-----SMGNPHAIFFVEDD 174
           G PI D   +P  A     +D+   H          +   V     SMGNPHA+  V  D
Sbjct: 121 GAPIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIVA-D 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G  + +H  F   VN    +V + + + LR WERG G T ACG+ ACA+VV
Sbjct: 180 VDAAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAVV 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A   L      V V   GG L IEW +   V MTG A   + G++D+ 
Sbjct: 240 AGIRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVP 287


>gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
 gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
          Length = 282

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 13/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +     AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +     + +   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L    IP+A            +  ++  F  N   VSMGNPH + FV DD+  
Sbjct: 119 VNMGVPRLKRAEIPMAGEPADGQIVSQPLNILHTTF--NITCVSMGNPHCVIFV-DDVES 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 176 FQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T + +   + GG L +EW D+  ++MTG A + + G++D+
Sbjct: 236 LNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDL 279


>gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329]
          Length = 276

 Score =  342 bits (878), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + + + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            +V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
 gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
          Length = 289

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+   + +P  A   D     R  + P+      R    VSMGNPHA+  V DD   
Sbjct: 121 MGAPVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289


>gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
 gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
          Length = 294

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 149/290 (51%), Positives = 193/290 (66%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A   L+ D  T FDQIM IHD +      
Sbjct: 2   ASTTPFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGTAF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DG+  Q+CGNGMRCVV+ L +   +KSFTFET+ GIL A E+ DGSISVDMG 
Sbjct: 62  FIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDMGM 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L  
Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELDR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+    +T
Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTRRT 241

Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+VS+    GG L +EW D++HV +TG A+ E+ G  D  TG W +  E
Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291


>gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
 gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
          Length = 280

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 6/280 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            +V F KM G+GN  +V+D+      +T   +  L        FDQ++++    +  +D 
Sbjct: 1   MLVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV++CGNG RC  +F+  +    +     +T  G +  K + D  + V+M
Sbjct: 61  RYRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PIL    +P              +             +SMGNPH +  V D   +  +
Sbjct: 121 GAPILAPVDVPFQADQKATTYA-IDVPLSQGDQQVELSAISMGNPHGVLIV-DSTENAPV 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L  H  F    N+   +V S   ++LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 179 ETLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRG 238

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             +  V+V + GG L IEWH +   V MTG A   +EG++
Sbjct: 239 VLDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQI 278


>gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25]
          Length = 276

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 96/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRAGEKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG     ++G+L 
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQLS 275


>gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
 gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
          Length = 276

 Score =  342 bits (877), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T++ +  L+        DQI+L+    DAS D 
Sbjct: 1   MRLKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLADRHFGVGCDQILLVEKAHDASADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VRF+  +    +     ET  G++  +   DG + V+M
Sbjct: 61  RYRIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+ D   IP +    ++ +                 +VSMGNPHA+  V DD+    +
Sbjct: 121 GAPVFDAARIPFSGGTIEVMQPLVVADQ-----TLMVSIVSMGNPHAVQVV-DDVERAAV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F + VN    ++   + + LR +ERG G T +CG+ ACA+VV+     
Sbjct: 175 EVLGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
             +  VSV   GG L I W  +   V MTG A   + G++++
Sbjct: 235 LLDSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276


>gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 281

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID       +T + I  +S        D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  GIL         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121

Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P+L    IP+  ++ + +      IG  N  F      VSMGNPH + FV DD  
Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSD 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA 
Sbjct: 177 EFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAG 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 237 NLTGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
 gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
          Length = 279

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 137/280 (48%), Gaps = 15/280 (5%)

Query: 6   VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  + ++       ++I S AI           D ++LI   + A  DA 
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKA--DAQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE + CGNG+RCV +++       +++   ET  G+L       G     + 
Sbjct: 59  MRMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL    IP     D        +G            VSMGNPH I FV D++  
Sbjct: 119 VNMGKPILTSAEIPTLLPGDPPVNAPLEVGAQTLEVT----CVSMGNPHCITFV-DEVND 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  +  HPMF   VN     V S   L +R WERG G T ACG+ ACAS VA  
Sbjct: 174 HWVHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              ++ R V + + GG L +EW DN+ VFMTG A + ++G
Sbjct: 234 LTGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQG 273


>gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ]
 gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ]
          Length = 278

 Score =  341 bits (876), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D      DN    AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +   T ET  GIL  +     EN+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVR 118

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L  + IP+      ++  +   +             VSMGNPH I +V DD+ 
Sbjct: 119 VNMGPPRLSREEIPMNGTPAAQVVAEELTVLDKTFKIT----CVSMGNPHCIIYV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++ +A++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA 
Sbjct: 174 NFPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGASAVCVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + T+R +   + GG L +EW +N  VFMTG A + + G++ +
Sbjct: 234 VLNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278


>gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
 gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
          Length = 276

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62
            +V+F+KM G+GN  LV+D    +  ++ + I    + +    FDQ++++    D  +D 
Sbjct: 1   MLVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  +F+  +    +      T  G +     RDG+ISV M
Sbjct: 61  HYRIYNADGSEVGQCGNGARCFAKFVRMKGLCNKHKIKVSTSTGKMNLHIERDGNISVTM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  + K IP      +     + +   +   L     VSMGNPH +  V D +   D+
Sbjct: 121 PVPQFEPKKIPFTAQKTE---GTYILRSESETVLCG--AVSMGNPHCVVTV-DSVAEADV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L+ H  F E  N+    + S   + LR +ERG   T ACGS ACA+VV      
Sbjct: 175 ESLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQK 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           K  + V+V++ GG L I W    H V M+G A   ++G++ I
Sbjct: 235 KLAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276


>gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
 gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
          Length = 278

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +  +D AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +K  + ET  GIL  +      N+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L    IP+      K+  +  +I         +    SMGNPH + FV DD+ 
Sbjct: 119 VNMGRPRLTRSEIPMTGEAGAKVINEPLNIL----HTTFHITCASMGNPHCVIFV-DDVE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++ +  +G ++  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA 
Sbjct: 174 NFQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                T + +   + GG L +EW ++  ++MTG A + + G+++I
Sbjct: 234 ALNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278


>gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 309

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++L+        D 
Sbjct: 22  KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    R+S   + ++G++      +G + VDM
Sbjct: 82  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVVDM 141

Query: 121 GEPILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P   S  D        + P++     R    VSMGNPHA+  V DD+  Y
Sbjct: 142 GAPVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 261 RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
 gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
          Length = 289

 Score =  341 bits (875), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+   + +P  A   D     R  + P+      R    VSMGNPHA+  V DD   
Sbjct: 121 MGAPVFAPEQVPFDASGLDGRTEGRDTLWPLEIGGRTRWISTVSMGNPHAVQVV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289


>gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
 gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
          Length = 294

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 140/295 (47%), Gaps = 16/295 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVE 172
           MG P+     +P       A   D     R  + P++     R    VSMGNPHA+  V 
Sbjct: 121 MGAPVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV- 179

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+  Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+
Sbjct: 180 DDVEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAA 239

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
           V A       +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 VAAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDLTA 294


>gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
 gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
          Length = 295

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 8/284 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDM
Sbjct: 61  SYRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP         ++ +H+           +V +MGNPHA+  V DD+   D+
Sbjct: 121 GKPKFEPSEIPFTPRATTKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKV-DDVLDADV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 178 ESLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREG 237

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +    V  ++ GG ++I+W     V MTG     +EG     
Sbjct: 238 WLDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVFSPD 281


>gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
 gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
          Length = 277

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 152/284 (53%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++      +  S+    +S        D ++LI   Q    D  +
Sbjct: 1   MKFTKMQGLGNDYIYVNCFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQ--MCDFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+      ++     ET+ GI    +  K+N+   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+   IP+  + +        I             VSMGNPHA+ +V DD+  +
Sbjct: 119 DMGEPILEPAKIPVDSNKELFVSQPVVIDGREFKVT----CVSMGNPHAVTYV-DDVEKF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  + ++ + +N    +V   ++L +R WERG G T ACG+ ACA +V+S  
Sbjct: 174 PLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGTGACAVLVSSVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+
Sbjct: 234 NDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277


>gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815]
 gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815]
          Length = 286

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 10/286 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T   + AL+        DQ++++       VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+       ++S   +  +G++      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P         +   D  +   VN    R   VVSMGNPHA+  V DD+  
Sbjct: 121 GAPVFEPVQVPFDASGVEARREGNDTLYALEVNGE-TRWVSVVSMGNPHAVQVV-DDVEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F + VN    ++     + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FPVLVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
                +  V V   GG L I W+    + + M G A   +EG++++
Sbjct: 239 RRGLLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIEL 284


>gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629]
          Length = 285

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 140/287 (48%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++        +  +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLGDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++       +   + ET  GI    L  +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV DD+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFV-DDV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE+    NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284


>gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 140/287 (48%), Gaps = 11/287 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++L+        D 
Sbjct: 22  KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 82  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVVDM 141

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P  A   D     R  + P++     R    VSMGNPHA+  V DD+  Y
Sbjct: 142 GAPVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 309

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++L+        D 
Sbjct: 22  KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADF 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 82  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDM 141

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P  A   D        + P++     R    VSMGNPHA+  V DD+  Y
Sbjct: 142 GAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDVEAY 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 280

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/274 (37%), Positives = 150/274 (54%), Gaps = 8/274 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D+R     +T     A++        DQ+++I   +    DA++ 
Sbjct: 8   PFLKMHGLGNDFVVVDVRRSGFVLTPAMARAIADRRTGLGCDQVVVIETARSGLSDAWMS 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGS   +CGN  RCV   L  +        ET  G+L A+   D  ++VDMG   L
Sbjct: 68  LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPLA+  D +         +    L +P  VSMGNPHA+FFV DD+   DLA+ G 
Sbjct: 128 DWREIPLAKPVDTLHM------GIGIGSLTDPVGVSMGNPHAVFFV-DDVAAIDLAALGP 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F E  N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+     T R 
Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             V + GG L IEW  ++HV MTG      EG+L
Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274


>gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
 gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
          Length = 281

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 146/288 (50%), Gaps = 16/288 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M+  M  F KM+G+GN  + ++      ++ ++ A+           D ++LI+  + A 
Sbjct: 1   MEKKM-KFTKMQGLGNDYVYVNCFKEKIEDPSALAVRISDRHFGVGSDGLILINPSKVA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113
            D  + + N DGS  + CGNG+RCV +++       +++ + ET+ GI       +  + 
Sbjct: 59  -DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIENGKV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + VDMG PIL    IP+    ++   +   +    +        +SMGNPHAI +V D
Sbjct: 118 AKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYR----MTCISMGNPHAIVYV-D 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ +  +   G L  KH  F   VN    +V    ++++R WERG G T ACG+ ACA+ 
Sbjct: 173 DVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGACATA 232

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
           VA      T   V+VK+LGG L IEW  + N VFMTG AK  ++G  +
Sbjct: 233 VACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDGVWE 280


>gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
 gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 281

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 147/285 (51%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID       +T + I  +S        D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  GIL         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121

Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P+L    IP+  ++ + +      IG  N  F      VSMGNPH + FV DD  
Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNLKFT----AVSMGNPHCVIFV-DDSD 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA 
Sbjct: 177 EFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAG 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 237 NLTRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
 gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
          Length = 295

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 141/284 (49%), Gaps = 8/284 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +R G + VDM
Sbjct: 61  SYRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP         ++ +H+           +V +MGNPHA+  V DD+   D+
Sbjct: 121 GKPKFEPSEIPFTPRAITKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKV-DDVLDADV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA+V       
Sbjct: 178 ETLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREG 237

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +    V  ++ GG ++I+W     V MTG     +EG     
Sbjct: 238 WLDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVFSPD 281


>gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
 gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
          Length = 277

 Score =  340 bits (873), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 138/282 (48%), Gaps = 17/282 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           +    + F KM G+GN  +VID R   + +T     AL        FDQ+ +I   +   
Sbjct: 6   LSEPGLRFLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAE--G 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  +   N DGS+  +CGN  RCV   +   + +   T  T RG L A+   DG +SV+
Sbjct: 64  ADFTLEFWNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVN 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PILD   IP+A              P+      +P  V MGNPH +FFVE D    D
Sbjct: 124 MGAPILDPAAIPVAA------------DPLALPLTGDPVAVGMGNPHCVFFVE-DAETAD 170

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           ++  G  +  HP+F E  N+  A +   + L +R WERG G+T ACGS  CA+ VA+   
Sbjct: 171 VSGLGPKIEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLR 230

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             T R V V + GG L I+W ++  V+MTG     +  +L  
Sbjct: 231 GLTGRRVIVDVDGGRLEIDWREDG-VWMTGPTALVFAAELSP 271


>gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666]
 gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666]
          Length = 299

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 12/291 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM+G GN  +++D      N+++     L+        DQI+ +       +D
Sbjct: 8   AMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGID 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC VRF+  +    + +   +T+ G++  +   DG ++VD
Sbjct: 68  FEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQADGRVTVD 127

Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG P+ +   IP       A+     ++    +         +  V+SMGNPHA+  V D
Sbjct: 128 MGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPHAVQLV-D 186

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    +   G L+  H  F + VN    +V S   + LR +ERG G T ACG+ ACA+V
Sbjct: 187 DVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGTGACAAV 246

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           VA       +  V V+  GG L IEW    +  V MTG A   +E ++++ 
Sbjct: 247 VAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVP 297


>gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19]
 gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19]
 gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28]
 gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90]
          Length = 303

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
 gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
          Length = 284

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 16/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  ++++    +G  D+ ++ A            D ++L++D      D 
Sbjct: 1   MYFTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYDS--GVADV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            ++I+N DGSE + CGN +RCV ++L     +K+     ET+ GI+V +    E    ++
Sbjct: 59  RMKIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP ++   IP+     ++  +   +    +L       VSMGNPH I FV  DL 
Sbjct: 119 RVDMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYLVT----AVSMGNPHCIIFVP-DLE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G  +  HP F +  N+   +V     + +  WERG G T ACG+ ACA  VA 
Sbjct: 174 DISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                T R V+V + GG L+IEW +N  ++MTG A + + G+  +  
Sbjct: 234 VLNGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTVYN 280


>gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
 gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
          Length = 303

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
          Length = 303

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
 gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 150/286 (52%), Gaps = 13/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D  
Sbjct: 18  MSDRAWPFLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPC 77

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DA + I N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VD
Sbjct: 78  ADATMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 137

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   LDW+ IPLA + D +         ++   L +P  VSMGNPHA+FFV DD    +
Sbjct: 138 MGPARLDWREIPLAEAVDTLHL------GISAGPLADPVGVSMGNPHAVFFV-DDAEAVN 190

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234
           LA  G  L  H +F E  N+ +A+V +        + +R WERG G+T ACG+ ACA++V
Sbjct: 191 LAQLGRGLEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLV 250

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A+     + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 251 AAARRGLSPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296


>gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
 gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
          Length = 279

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 13/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K  G GN  ++++      ++    A+           D ++++   Q A  D  +
Sbjct: 1   MQFTKWHGQGNDFVIVNGFQEKIEDYAQAAVKICDRHFGIGADGLVIVGPSQVA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE + CGN  RCV R++       +   T ET+ G +  +   +     ++ V
Sbjct: 59  RIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRTVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP L    IP+    D    +  ++  + +    +   VSMGNPH I FV DD+   
Sbjct: 119 DMGEPRLKRAQIPMIGEPDS---EAINVPLIVNDKTYDITCVSMGNPHCIIFV-DDVDEI 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +LA+ G L+  HP F    N+   +V +   + +R WERG G+T ACG+ A A++VA+  
Sbjct: 175 NLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVAAVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             KT R  ++ + GG L++EW ++NHV+M+G A + + G+ 
Sbjct: 235 NGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGEY 275


>gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
 gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
          Length = 276

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/277 (34%), Positives = 137/277 (49%), Gaps = 7/277 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      N T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  VRF+T +    +++   ET+ GI+  +   +G I+VDMG PIL+ 
Sbjct: 61  DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120

Query: 128 KLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           + +P        K + +                VVSMGNPHA+  V  D+    +   G 
Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVA-DVEEAPVREDGV 179

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VVA          
Sbjct: 180 LIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSP 239

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V V+  GG L+I W   ++ V MTG A   +EG+++I
Sbjct: 240 VKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276


>gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae]
          Length = 269

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 131/273 (47%), Gaps = 10/273 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF  L     ++     T  G L      +  + V+MG P  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P    F     ++ +I       +    VVS+GNPH +  VE D+   ++A  G +L
Sbjct: 121 NKVP----FKAQKSEKTYIIRTQQQTILCG-VVSIGNPHCVLQVE-DIDTAEVALLGPML 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            KH  F E  N+   +V   E + LR  ERGVG T ACGS ACA+V          ++V 
Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKSVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           V + GG L I W+   H +FMTG A   ++G +
Sbjct: 235 VDLPGGMLKIRWNGLGHPLFMTGPATHVYDGVI 267


>gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
 gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
          Length = 295

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 12/293 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M    + F KM+G GN  +++D       ++      L+        DQI+ +       
Sbjct: 1   MPFMRIRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLADRHFGVGADQILTVRPSPGEG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D    I N DG EV+ CGNG RC VRF+  +    + +   +T+ GI+      DG ++
Sbjct: 61  IDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVT 120

Query: 118 VDMGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           V+MG P+ + + IP        ++     +    +            VVSMGNPHA+  V
Sbjct: 121 VNMGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV 180

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    +   G L+  HP F   VN    +V S   + LR +ERG G T ACG+ ACA
Sbjct: 181 -DDVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACA 239

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           +VVA   L   +  V V   GG L IEW    +  V MTG A   +E ++++ 
Sbjct: 240 AVVAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292


>gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
 gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
          Length = 289

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 139/290 (47%), Gaps = 11/290 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+     +P      D     R  + P++     R    VSMGNPHA+  V DD+  
Sbjct: 121 MGAPVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 RRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 289


>gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4]
 gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4]
          Length = 276

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 131/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF  L     + S +  T +G +      DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F    +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIP----FKAKQKEKTYIMRTGEKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E  N    ++    ++ LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FM G A   ++G+L 
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQLS 275


>gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
          Length = 303

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
 gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 147/286 (51%), Gaps = 12/286 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
            + F KM+G+GN  + ++      +   +    +S        D +++I+  + A  D  
Sbjct: 6   KMKFTKMQGLGNDYVYVNCFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFE 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + + N DGS  + CGNG+RCV +++       +   + ET+ GI    L  K+ +   + 
Sbjct: 64  MEMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVR 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLY 176
           VDMGEP LD + IP+       + DR     +           VSMGNPH + ++ D++ 
Sbjct: 124 VDMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYI-DNVQ 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+   G     H  F + +N   ARV   +++++R WERG G T ACG+ ACA  VAS
Sbjct: 183 GLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACAVAVAS 242

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                T R V +++LGG L IEW  ++NHV+MTG A   ++G++++
Sbjct: 243 ILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288


>gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
 gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
          Length = 292

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 134/290 (46%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T      L+        DQI+ +       +D 
Sbjct: 1   MQIRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  +    R +   +T+ G++  +   DG ++VDM
Sbjct: 61  EYVIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTVDM 120

Query: 121 GEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P  D   +P   S                +G      + +  VVSMGNPHA+  V  D
Sbjct: 121 GRPRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLV-GD 179

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+  H  F + VN    ++     + LR +ERG G T ACG+ ACA+V 
Sbjct: 180 VDAAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAAVA 239

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A   L   +  V V+  GG L I W  +    VFMTG A   +EG++DI 
Sbjct: 240 AGIRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289


>gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3]
          Length = 276

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ FAKM G+GN  +V+D+     +++++ I  L        FDQ++L+   Q   VD 
Sbjct: 1   MLLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLGDRNTGVGFDQLLLVETPQSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV+ CGNG RC  RF+  +    ++    +T  G +  K  +D  + VDM
Sbjct: 61  RYRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP+L   L+P             H G           VVSMGNPHA+  V DD+    +
Sbjct: 121 GEPVLLPSLVPFDAPAQAPSYRLEHNGQ-----SYTIGVVSMGNPHAVIVV-DDVASAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L +HP F    N+   ++ +  ++ LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 VELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                V+ ++ GG L I+W     H+ M G     +EG++ +
Sbjct: 235 LLGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276


>gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
 gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
          Length = 296

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 137/290 (47%), Gaps = 12/290 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       VD 
Sbjct: 5   MQIRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLANRHFGVGADQILTVRPAPSEGVDF 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC  R++  R    +     +T+ G++  + + +G ++VDM
Sbjct: 65  EYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRVTVDM 124

Query: 121 GEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           G P LD   +P       A +     +    +             VSMGNPHA+  V DD
Sbjct: 125 GAPQLDPVKVPFSTEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQLV-DD 183

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  H  F + VN    ++ +   ++LR +ERG G T ACG+ ACA+VV
Sbjct: 184 VNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGACAAVV 243

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           A       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 244 AGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293


>gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14]
          Length = 276

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 138/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      ++ ++ AI           D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       +   T ET+ GI    L  +  +   + V
Sbjct: 59  AMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL    IP+    DK   +   +    +    +   VSMGNPHA+ +V DD+ + 
Sbjct: 119 DMGSPILTPAEIPVVAEGDKAVDEPILVDGKEY----HMTCVSMGNPHAVVYV-DDVNNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     H  F   VN    +V    ++ +R WERG   T ACG+ ACA  V+   
Sbjct: 174 PIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSCIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              T   V+VK+LGG L I+W  + N V+MTG A   ++G+L
Sbjct: 234 NGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGEL 275


>gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 275

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ID      +   + AI           D ++LI           +
Sbjct: 1   MKFTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDK--CSFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE Q CGN +RCV +++      ++ + T ET+ G+    L    ++   + V
Sbjct: 59  RMFNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+PIL  K IP+    +K+  +         +       VSMGNPH + FVE  +   
Sbjct: 119 NMGKPILLAKDIPVIWEKEKLIYETIDFSSEQWILT----AVSMGNPHVVIFVE-KVSRL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G  +  HPMF E +N+    + SL    +R WERG G T ACG+ ACA++VAS  
Sbjct: 174 DVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
             K NR  ++ +LGG L +EW +   HVFMTG+A   + G+ 
Sbjct: 234 NGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIGEF 275


>gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
 gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
          Length = 276

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 96/279 (34%), Positives = 134/279 (48%), Gaps = 10/279 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG+EV+ CGNG RC  RF+       R +    T +G +  K   D  I+V+MGEP
Sbjct: 64  IFNSDGTEVEQCGNGARCFARFVRMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ ++       L     VSMGNPH    V DD+ +YD+  +
Sbjct: 124 QFEPNKIP----FKATQAEKTYLLRAEDKTLFCG-AVSMGNPHC-VTVVDDVDNYDVDKY 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H  F E VN     + S   + LR +ERG G T ACGS ACA+V          
Sbjct: 178 GPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLE 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 238 EDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH]
          Length = 289

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 135/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD+ 
Sbjct: 121 MGAPVFEPARVPFDTSGLGGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDVE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
          Length = 303

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
 gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
          Length = 277

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  +V+D        +    A            D I+++     A  DA 
Sbjct: 1   MHFVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCDRHFGIGADGIIIVLPSDIA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI+N DGSE + CGNG+RC  +++     +K++  + ET+ GI+  +   +G     + 
Sbjct: 59  MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P  +   IP      ++      +    +        +SMG PH + FV DD+  
Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVDSQPYAIT----SMSMGVPHTVIFV-DDVDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G  + KHP+F +  N++   V +   + +RTWERG G T ACG+ +CAS VA+ 
Sbjct: 174 VDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAVAAA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +T RAV+V ++ G L I W +++ VFMTG A K ++G ++
Sbjct: 234 ITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276


>gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49]
          Length = 289

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 138/288 (47%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  R    R+S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+     +P  A   +     R  + P++     R    VSMGNPHA+  V DD   
Sbjct: 121 MGAPVFAPAQVPFDAAGLEGRAEGRDTLWPLDVGGRTRWITTVSMGNPHAVQVV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287


>gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 303

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    + P +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
 gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
          Length = 309

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++L+        D 
Sbjct: 22  KLSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADF 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 82  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 141

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P  A   D     R  + P++     R    VSMGNPHA+  V DD   Y
Sbjct: 142 GAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAEAY 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 201 PVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 261 RGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDL 307


>gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
 gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
          Length = 276

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G +V     D  ++V+MGEP
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIP----FKAKQTEKTYILRADDKTLFCG-AVSMGNPHV-VTVVDDVTTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V   + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      ++MTG A   ++G+L 
Sbjct: 238 EKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQLS 275


>gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 334

 Score =  339 bits (869), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQD- 57
           +++  V F+K  G+GN  ++ID R   +  +T +    L         D ++        
Sbjct: 39  LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109
               A  D  +RI N DGSE + CGNG+RC+ +FL    + KS    +   T+ G +V  
Sbjct: 99  SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            N DG+I+VDMGEP L+   +P     +             +        V MGNPHAIF
Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTTLEANAEHDSVVEQTLEANGKTWKCTAVGMGNPHAIF 218

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV D     D    G  L  H  F    N+   +V   + L ++ WERG G T ACG+ A
Sbjct: 219 FVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLACGTGA 278

Query: 230 CASVVASGCLHKT---NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA  VA+    K    ++ V V + GG L IEW + +N ++MTG A   + G+  +
Sbjct: 279 CALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETKV 334


>gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45]
 gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45]
          Length = 279

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 102/289 (35%), Positives = 153/289 (52%), Gaps = 19/289 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F KM G+GN  +V+D R     +T   + A++       FDQ+ LI      + D
Sbjct: 8   SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALIEP---GAGD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS   +CGN  RC+ R+L  +  R   T  T RG L+A++   G  SV+MG
Sbjct: 65  ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW  IPLAR  D ++       P++      P    MGNPH  FFVE D    DL 
Sbjct: 125 QPQLDWHEIPLAREMDTLEL------PIDGA----PTATGMGNPHCTFFVE-DAEAVDLT 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           SFG +   HP++ E  N+ +A +   + + +R WERG GLT A GS++CA+ VA+     
Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           T R V++++ GG L ++W ++  V+MTG     ++G     +  W++  
Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF---SRAWLEAA 278


>gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
 gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
          Length = 285

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  + ++         ++    +S        D ++ IH    A  
Sbjct: 4   RSDSMKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA-- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D  + + N DG+E   CGNG+RC+ +++       + + T ET  GI    L  ++ +  
Sbjct: 62  DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVT 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDM  P+L+   IP+    +K   D+  I             VSMGNPH + FV D 
Sbjct: 122 WVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVDGRE---YRITCVSMGNPHGVVFV-DS 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ ACAS  
Sbjct: 178 VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAY 237

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           AS    KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 238 ASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285


>gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 279

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN  + ++         S+    +S        D ++LI   +    D 
Sbjct: 1   MQMKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +++ N DGS  + CGNG+RCV +++       +   + ET+ GI    L  +E +   +
Sbjct: 59  EMKMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG PI   + IP+    D        +    +        VSMGNPHA+ ++ DD+ 
Sbjct: 119 KVDMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYR----MTCVSMGNPHAVVYL-DDIQ 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           + ++   G     HP F   VN   ARV   E++++R WERG G T ACG+ ACA  VAS
Sbjct: 174 NMEIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGACAVAVAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 234 MVNGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277


>gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
 gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
          Length = 281

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R     +     AI           D ++     Q A  D  
Sbjct: 3   LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ RF+          K+++  T+ G++  +   D  + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MGEPIL    IP  L  S  +       +             VSMGNPH I FVE D+  
Sbjct: 122 MGEPILTATDIPTTLKDSNGQAVNQPLEVAGK----TWMVTCVSMGNPHCITFVE-DVAA 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G     HP F + +N     V   + + +R WERG G+T ACG+ ACASVVA  
Sbjct: 177 IALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                +R  +V++ GG L IEW   +NH++MTG A   ++G++ +
Sbjct: 237 LTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281


>gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 278

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +  S A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118

Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P    K IP+    D         +    +        + MG PH + FV DD+ 
Sbjct: 119 VNMGKPSFKRKDIPMQGEPDSDAINTSIEVDGKEYKIT----SLLMGVPHTVLFV-DDVE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+ + G  + +H +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS
Sbjct: 174 KVDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T R  +V +  G L IEW ++  VFMTG A++ + G+ 
Sbjct: 234 NLNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGEY 276


>gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu]
          Length = 289

 Score =  338 bits (868), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 141/290 (48%), Gaps = 11/290 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALANRHFGVGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  +    ++S   E ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ +   +P   +      + R  + P++     R    VSMGNPHA+  V DD   
Sbjct: 121 MGAPVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAER 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y + + G L+ +H  F++ VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDLAA 289


>gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
 gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
          Length = 289

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 149/289 (51%), Gaps = 15/289 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           ++ + + F KM+G+GN  + ++          +    +S  +     D +++I+    A 
Sbjct: 8   VRRNEMKFTKMQGLGNDYVYVNCFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA- 66

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRD 113
            D  + + N DGS  + CGNG+RCV +++      +++  + ET+ GI    L  ++ + 
Sbjct: 67  -DFEMEMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKV 125

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + VDMG P L  + IP+    +++  +  ++    +        VSMGNPHA+ +VE 
Sbjct: 126 KLVKVDMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVE- 180

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   D+ + G     H  F   VN    +V    ++++R WERG G T ACG+ ACA  
Sbjct: 181 DVKGLDIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVA 240

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           VA      T   V+VK+LGG L IEW  + + ++MTG A+  ++G++++
Sbjct: 241 VACILNGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289


>gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
 gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
          Length = 281

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F KM G+GN  +VID            + +D I  L+       FDQ++++   Q   
Sbjct: 3   LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GD 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI+N DGSEV  CGNG RC  RF+  +    +KS   ET  G +      D  I+
Sbjct: 62  ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQIT 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP+     K + D + +  V+     +   V +GNPH    VE+ +  
Sbjct: 122 VDMGAPRWAPDAIPMTA---KAEADNYFL--VSGTQAWDVGAVGLGNPHCTLLVEN-VDT 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G LL  H  F E  N+   ++ S   + LR +ERG G T ACGS ACA+VV   
Sbjct: 176 APVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +  V+V + GG L + +     + MTG A   ++G ++I
Sbjct: 236 RRDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEI 279


>gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
          Length = 289

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 276

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F KM+GIGN  +V+D       +    I+ L+       FDQ+++I   Q    D   
Sbjct: 3   VPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADFHF 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGNG R V +++  +    ++     T    +      +G I+++MG+
Sbjct: 63  RIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+ + IPL         + + I             VSMGNPH +  VE D+    +  
Sbjct: 123 PRLEPEKIPLRF---AQQSETYMIDA--EGIRYKIGAVSMGNPHCVLQVE-DIDKAAVGK 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L+ H  F    N+   +V     + LR +ERGVG T ACG+ ACA+VVA       
Sbjct: 177 VGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVAGRLQKIL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      V+MTG AK  +EG++D+
Sbjct: 237 DEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276


>gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      + T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDMG PIL  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120

Query: 128 KLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           + +P   S         D      +         V+SMGNPHA+  V  D  H  +   G
Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGE-THWISVLSMGNPHAVQVVA-DADHAPVREDG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+         
Sbjct: 179 VLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGLLAS 238

Query: 245 AVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            + V+  GG L I W  +N  V +TG A   +EG++++
Sbjct: 239 PIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276


>gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1]
 gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1]
          Length = 300

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18]
 gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18]
          Length = 276

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +    AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      +  K  T ET  GIL  +     +++   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKVR 118

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L  K IP+     +K+  +  +I         +    SMGNPH + FV DD+ 
Sbjct: 119 VNMGPPRLTRKEIPMLGNPDEKVINEPLNIL----HSTFHITCASMGNPHCVIFV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +  +G ++  H MF    N+   +V S   +  RTWERG G T ACG+ + A   A 
Sbjct: 174 KFPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVTAAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 234 VLNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276


>gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 277

 Score =  337 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 148/284 (52%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K+ G+GN  +V++        ++   A            D ++L+H    A  D  
Sbjct: 1   MHFVKVHGLGNDFVVVNAMTETLPADLPELARRVCHRYFGIGADGLVLLHKSDAA--DLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           ++IIN DGSE + CGN +RCV ++   +  +K+     ET+ GI    L+ +      I 
Sbjct: 59  MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP+  S  ++  +  ++G            VSMGNPH + FV++ +  
Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVGNETFKVT----AVSMGNPHCLIFVDEAV-S 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + ++  G  +  H +F    N+    V +   + ++ WERG G T ACG+ ACA+VVA+ 
Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T R V+V + GG LLIEW DNNHV+MTG A++ + G   +
Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277


>gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331]
          Length = 280

 Score =  337 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 135/281 (48%), Gaps = 9/281 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID    H + T      L         DQ++++   Q   VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ GI+  K   DG I+V MG P+L  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLAP 120

Query: 128 KLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             +P   S      M  D      V    +    VVSMGNPHA+  VED      + + G
Sbjct: 121 AAVPFDASNLDSRAMGEDTLWPLDVQGKQV-WISVVSMGNPHAVQVVEDS-EAAPVLAEG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA       + 
Sbjct: 179 PLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRRGLLDS 238

Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284
            V+V+  GG L I W      V MTG A   +EG+++I   
Sbjct: 239 PVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEIAAA 279


>gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
 gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
          Length = 276

 Score =  337 bits (866), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V++ GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQLS 275


>gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33]
          Length = 303

 Score =  337 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISV MG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
 gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
          Length = 368

 Score =  337 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R            +D +  +         D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RFL      +  +S+  ET  G ++ +  +DG 
Sbjct: 60  QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  + +P   S D+    R  +         +   V MGNPH +  V DDL
Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEV--TREGLTLSLAAVGMGNPHVVVPV-DDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G  L   P+F    N+   +V S + L++R WERG G T ACG+ ACA++VA
Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L  ++   +V + GG L I W D    VFMTG A   ++G ++  
Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMNPD 284


>gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681]
 gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus
           polymyxa E681]
          Length = 277

 Score =  337 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 148/283 (52%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V    +      +  A+           D ++ I   + A  D  +
Sbjct: 1   MEFTKMNGLGNDFIVWFGHQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKA--DFCM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RIIN DGSE + CGN +RC  +++     + R+  T ET+  G+    L  +      + 
Sbjct: 59  RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP      ++  +    G     F      VSMGNPH + +VE D   
Sbjct: 119 VDMGEPILEGLKIPTTLERTRVINEPIEAGGSGFCFT----AVSMGNPHCVIYVE-DAPS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS 
Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               ++R   V + GG L IEW  D+NH++MTG A+  +EG+L
Sbjct: 234 LNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276


>gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
 gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
          Length = 276

 Score =  337 bits (866), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 133/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPSKIPFKAKQP----EKTYILRTDAHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V++ GG L I W      ++MTG A   ++G+L 
Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQLS 275


>gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
 gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
          Length = 276

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 135/278 (48%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S +  T +G +V     D  ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP    F     ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIP----FKAKQTEKTYILRADEKTLFCG-AVSMGNPHV-VTVVDDVNTTDVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V + GG L I W      +FMTG A   ++G+L 
Sbjct: 238 ENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQLS 275


>gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1]
 gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1]
          Length = 293

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 149/286 (52%), Positives = 190/286 (66%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            FAKM G+GN I+V DMRG  D +  +A   L++D  THFDQIM IHD +    + +I I
Sbjct: 6   QFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           IN DGS  Q+CGNGMRCVV+ L +   R SFTFETI G+L A+E+ +G ISVDMG+P   
Sbjct: 66  INSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F    +    +GP++   L +P V SMGNPHAIF+VEDD Y YDL  FG +
Sbjct: 126 WQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLERFGPM 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N++IARV S E L +RTWERG GLT ACGSAACA+ V++    +T R V
Sbjct: 186 LENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGV 245

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
            V + GG L I W D++HV MTG A+ E+ G+ D  TG W ++ E 
Sbjct: 246 KVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEG 291


>gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 277

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++    H    S+    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+   CGNGMRCV +++       +   + +T  GI    L  +  +   + V
Sbjct: 59  EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MGEP+L+ K IP+    +K+    F++G      +     VSMGNPHA+ +V D++ + 
Sbjct: 119 NMGEPVLETKAIPMIYEGEKVISQPFNVG----QDIYEITAVSMGNPHAVVYV-DNVKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
 gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
          Length = 312

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 146/289 (50%), Positives = 195/289 (67%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GN+I+V D+RG    I+  A  AL+  + T FDQIM IHD +    DA IR
Sbjct: 21  VPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTDALIR 80

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IIN DGSE ++CGNG RCVV+ L S   ++ FTFET  GI++A E  DG I+VDMG P  
Sbjct: 81  IINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMGRPRF 140

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP++   L +P V SMGNPHAIF+V++D++ YDL  FG 
Sbjct: 141 GWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLERFGP 200

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++    +T+RA
Sbjct: 201 VLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGRTDRA 260

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
           V+V + GG LLI W +++ V MTG A   W G+LD  TG +++  +++ 
Sbjct: 261 VTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEEA 309


>gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653]
 gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653]
          Length = 303

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 147/282 (52%), Positives = 193/282 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++     T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRD 288


>gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 282

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++      +N +  A+           D ++LI+  + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNGFTERIENPSEVAVKVSDRHFGIGSDGLILINPSKVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNGMRCV +++       +     ET+ GI    L  +  +   + V
Sbjct: 59  EMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L   LIP+    + +  +   +    +        VSMGNPH + ++ DD+ H 
Sbjct: 119 DMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYM-DDIEHL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G     H  F + +N   A V   +++ +R WERG G T ACG+ ACA  V+S  
Sbjct: 174 DIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
              T   V+V++LGG LLI+W  + + V+MTG A+  ++G+
Sbjct: 234 NGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGE 274


>gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 277

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++    H    S+    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+   CGNGMRCV +++       +   + +T  GI    L  +  +   + V
Sbjct: 59  EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MGEP+L+ K IP+    +K+    F++G      +     VSMGNPHA+ +V D++   
Sbjct: 119 NMGEPVLETKAIPMIYDGEKVISQPFNVG----QDIYEITAVSMGNPHAVVYV-DNVKSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400]
          Length = 282

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 13/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++       N    AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +K  T ET  G+L  +     + R   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P L    IP+    D  D               N   VSMGNPH + FV DD+ +
Sbjct: 119 VNMGKPRLTRAEIPMLG--DPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFV-DDVEN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H MF    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 176 FQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
               T + +   + GG L +EW ++  ++MTG A + + G++++ T
Sbjct: 236 LNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGT 281


>gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 302

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 11/291 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +   + F KM+G GN  +V+D       +T      L         DQI+ +       +
Sbjct: 12  ERMRIQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLGDRHFGVGADQILTVRPSPAEGI 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG+EV+ CGNG RC  RF+  +    +     +T++G++      DG ++V
Sbjct: 72  DFEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTV 131

Query: 119 DMGEPILDWKLIPLARSFDKMDR----DRFHIGPVN--HLFLRNPFVVSMGNPHAIFFVE 172
           DMG P+ +   IP   S   +        + + PV            VSMGNPHA+  V 
Sbjct: 132 DMGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLVA 191

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    +A+ G  +  +P F++GVN+   +V S   + LR +ERGVG T ACG+ ACA+
Sbjct: 192 -DVDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAA 250

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
           VVA   L   +  V V+  GG L I W      VFMTG A   + G++++ 
Sbjct: 251 VVAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELP 301


>gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
 gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
          Length = 281

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 16/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASVDAF 63
           + F KM G GN  + +D+      + +  +    +D +     D ++LI     A  DA 
Sbjct: 1   MKFTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSIS 117
           +R+ N DGSE + CGNG+RCV +++      +++  T ET  G+L      ++ R   + 
Sbjct: 59  MRMFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL+   IP   + D        +G            VSMGNPH I FV D L  
Sbjct: 119 VNMGQPILESAKIPTTLAGDPPVEADLQVGDQTLKVT----CVSMGNPHCITFV-DKLSD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  + KH +F   VN     V S   L++R WERG G T ACG+ ACA  VA  
Sbjct: 174 EWVHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
              +  R V++ +LGG L +EW  +   VFMTG A + + G+
Sbjct: 234 LSGRCERKVTIHLLGGDLELEWSEETGEVFMTGPAVEVYSGE 275


>gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
 gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
          Length = 277

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++         S+    +S        D +++I+  + A  D  +
Sbjct: 1   MRFTKMHGLGNDYVYVNCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  K+ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L  + IP+    +++  +   +G + +        VSMGNPH + +V+ DL   
Sbjct: 119 DMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVK-DLEGV 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     H  F + VN    +V   +++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 KIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+VK+LGG LLIEW  +   V+MTG A   ++G++ I
Sbjct: 234 NGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277


>gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 277

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++         S+    +S        D ++LI   +    D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           ++ N DGS  + CGNG+RCV +++       +   + ET+ GI    L  +E +   + V
Sbjct: 59  KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PI   + IP+    D        +    +        +SMGNPHA+ ++ DD+ + 
Sbjct: 119 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYR----MTCISMGNPHAVVYL-DDIQNM 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     HP F   VN   A V   E++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 EIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
              T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 234 NGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275


>gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004]
 gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038]
 gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 274

 Score =  337 bits (864), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +  +     + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PDFEPQTVPFRAAKAE---KTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 NENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL 274


>gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
          Length = 303

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVD+G P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110]
 gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110]
          Length = 294

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 14/292 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA---S 59
             + F KM+G GN  +V+D       +T+     L+        DQI+ +          
Sbjct: 1   MRIRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLADRHFGVGADQILTVRPPSKGAAEG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD    I N DG EV+ CGNG RC +RF+       + +   ET+ GI+  +   DG ++
Sbjct: 61  VDFQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRVT 120

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFFV 171
           VDMG PI +   +P      D      +H     +G      + +  V+SMGNPHA+  V
Sbjct: 121 VDMGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQVV 180

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D++    +A  G L+  HP F++ VN    +V     + LR +ERG G T ACG+ ACA
Sbjct: 181 -DNVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACA 239

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
           +VVA   L    R V V+  GG L I W    H V MTG A   +EG +++ 
Sbjct: 240 AVVAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVP 291


>gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 284

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 103/286 (36%), Positives = 148/286 (51%), Gaps = 13/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D+ 
Sbjct: 1   MSERAWPFLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSC 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DA + I N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VD
Sbjct: 61  ADAQMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   LDW+ IPLA + D +         +    L +P  VSMGNPHA+FFV DD     
Sbjct: 121 MGPARLDWREIPLAEAMDTLHL------GITAGPLSDPVGVSMGNPHAVFFV-DDAEAVP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234
           LA  G  L  H +F E  N+ +A+V S        + +R WER  G+T ACG+ ACA++V
Sbjct: 174 LAQLGRGLEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A+     + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 234 AAARRGLSPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279


>gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
 gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
          Length = 280

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 16/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63
           + F KM GIGN  + +++      + +  +  + ++       D ++LI   +    DA 
Sbjct: 1   MRFTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE-----NRDGSI 116
           +++ N DGSE + CGNG+RCV +++      K+     ET RG+L  +       +   +
Sbjct: 59  MQMFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG PIL    IP A   D        +G        +   VSMGNPH + FV D+L 
Sbjct: 119 RVNMGTPILKSADIPTALPGDPPVNQPLVVGDK----TISVTCVSMGNPHCVTFV-DELT 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G  +  H  F   VN   A+V S   + LR WERG G T ACG+ ACA++VA 
Sbjct: 174 DAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATLVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               +T+    + + GG L IEW D   VFMTG A + + G+
Sbjct: 234 VLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPATEVFTGE 275


>gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
 gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
          Length = 280

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 16/287 (5%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI     A  D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDM  P+L      +     KM      +    +        V MGNPH + F+ DD+
Sbjct: 120 VTVDMDLPLLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            + +L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 KNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +   HKT R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 234 AYLNHKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1]
 gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1]
          Length = 304

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/295 (42%), Positives = 168/295 (56%), Gaps = 5/295 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M S+   F KM G+GN  +V D R    +++ + I AL        FDQ++ +     A 
Sbjct: 1   MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITVECSP-AG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118
            DAF+RI NCDGS+V +CGN  RCV R L     R     ET  G+LVA+   D   ++V
Sbjct: 60  ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V  D+  Y
Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWV-GDVEAY 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA  VA+  
Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
             +  R  +V + GG L IEW + + HV MTG  + E+EG++D+ T  W +    
Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAWERTGPG 293


>gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
          Length = 289

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 135/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+  R      S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAK 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + + G  + +HP F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AAPVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289


>gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2]
 gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2]
          Length = 303

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P   W
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99]
          Length = 303

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 145/285 (50%), Positives = 193/285 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG  + E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQG 291


>gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
 gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
          Length = 294

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 145/282 (51%), Positives = 192/282 (68%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I IINCD
Sbjct: 1   MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW+ I
Sbjct: 61  GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL  H
Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+V +
Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
            GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 282


>gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4]
          Length = 289

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 239 IRRGQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
          Length = 282

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 17/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  +VI+        ++ +  AI           D ++++   +D  +D 
Sbjct: 1   MRFTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDRHFGIGGDGLVIVG--KDRELDV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
           F+RI N DGSE + CGN +RCV +F+  R  +     +  T+ G     ++ K      +
Sbjct: 59  FMRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+  LIP+  S  K+  +                 VSMGNPH + FV D+  
Sbjct: 119 RVDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRIT----AVSMGNPHCVVFV-DEFS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              ++ +G +L  HP+F    N+  A++    ++ +R WERG G T ACG+ ACA++VAS
Sbjct: 174 SVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGACATLVAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                T R  +V++ GG L+IEW  DNNHV+MTGEAK+ + G++D++
Sbjct: 234 YLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280


>gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
 gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
          Length = 277

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 138/284 (48%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++            AI           D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFKETVEDPEKTAILVSDRHFGIGSDGLILIKPSSVA--DGKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+   CGNG+RCV +++       + S + ET  GI    L  +  +  ++ V
Sbjct: 59  EMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P+L    IP     + +  +   +             VSMGNPHA+ +VE D+ H 
Sbjct: 119 NMGSPVLQAAAIPAVSEKETVIDEPVTVNGREWRLT----CVSMGNPHAVTYVE-DVKHL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G     HPMF + VN   A V    ++++R WERG G T ACG+ ACA+ VAS  
Sbjct: 174 DIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              T   V+VK+LGG L I W    N+V+MTG A   ++G++ +
Sbjct: 234 NGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEIAL 277


>gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 278

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F+KM G+GN   V+D          + I  L        FDQ++++       +D 
Sbjct: 1   MLLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N +GSEV+ CGNG RC  +F+  +    +     ET +G +      DG ++VDM
Sbjct: 61  RYRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P   +  + D    ++     + L     VS+GNPHA+  V D L    +
Sbjct: 121 GAPSFAPADLPFDATEKQDDLYTLNLEGYGSVEL---TPVSVGNPHAVIRV-DRLTDEIV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ++ G L+  H  F   VN+    V S + ++LR +ER VG T ACG+  CA++VA     
Sbjct: 177 STVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQG 236

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             N  V+  +LGG L IEW  + + + MTG A K +EG++ +
Sbjct: 237 WLNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQIYL 278


>gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +  S A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118

Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P    K IP+    +         +    +        + MG PH + FV DD+ 
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIEVDGKEYKIT----SLLMGVPHTVLFV-DDVE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS
Sbjct: 174 KVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T R  +V +  G L IEW D+  VFMTG A++ + G+ 
Sbjct: 234 NLNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGEY 276


>gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
          Length = 269

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 144/288 (50%), Gaps = 29/288 (10%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R    N    AI   +       D ++LI     A  D
Sbjct: 2   TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115
             +RI N DGSE   CGN  RC+ ++L       +   T ET+ GI V K +       +
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVKA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+   I                   ++ F      VSMGNPH + FV DD+
Sbjct: 120 VTVDMGVP-LETGTIDF-----------------DNKFPFVSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL   G  L +HP+F +  N+  A++T    + +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RSIDLPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V + M GG L I+W +  NHV+MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELR 268


>gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 289

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 137/290 (47%), Gaps = 11/290 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+       VD
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+     +P  A   D        + P++     R    V+MGNPHA+  V DD   
Sbjct: 121 MGAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A  
Sbjct: 180 YPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
                +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 RRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 289


>gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
 gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
          Length = 278

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 139/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++         ++    +S        D ++ IH    A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DG+E   CGNG+RC+ +++       + + T ET  GI    L  ++ +   ++V
Sbjct: 59  AMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVNV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DM  P+L+   IP+    +K   D+  I             VSMGNPH + FV D +   
Sbjct: 119 DMEAPVLEADKIPVIYDEEKKVIDKPVIVDGRE---YRITCVSMGNPHGVVFV-DSVDDL 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ ACAS  AS  
Sbjct: 175 DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYASYL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 235 NQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278


>gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
          Length = 278

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +  S+    +S        D ++LI   Q A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+   CGNG+RCV +++     + + +    T  GI    L  +  +   + V
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL+   IP+     +       +    + F      VSMGNPHA+ ++ DD+ + 
Sbjct: 119 NMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYL-DDVDNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G    KHP+F + VN    +V   ++L +R WERG G T ACG+ ACA  V+S  
Sbjct: 174 DIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + T   V+VK+LGG L I W    N V+MTG A   ++G++ + 
Sbjct: 234 NNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITLP 278


>gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 309

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++L+       VD 
Sbjct: 22  KLSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDF 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 82  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 141

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P  A   D        + P++     R    V+MGNPHA+  V DD   Y
Sbjct: 142 GAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVV-DDAEAY 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A   
Sbjct: 201 PVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIR 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 261 RGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 309


>gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
 gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
          Length = 303

 Score =  335 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV  TG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
 gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
          Length = 280

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 16/287 (5%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI     A  D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDM  P+L      +     KM      +    +        V MGNPH + F+ DD+
Sbjct: 120 VTVDMDLPLLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            + +L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 KNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +   HK  R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 234 AYLNHKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
 gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
          Length = 277

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++T + +  L+        DQ++++ +     VD   
Sbjct: 3   LRFTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  GI+  +   DG ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+L+   +P     D + +    +G            VSMGNPHA+  V D       A+
Sbjct: 123 PVLEPARVPFVSDSDAIVQ-PLDVGGETVAIT----AVSMGNPHAVQVVADVDAAPV-AA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ +HP F   VN    +V     + LR +ERG G T ACG+ ACA+VV        
Sbjct: 177 QGALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVILRELA 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
              V V+  GG L I W      V MTG A   + G++D+ 
Sbjct: 237 QSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDVD 277


>gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
 gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
          Length = 290

 Score =  335 bits (860), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 149/283 (52%), Gaps = 9/283 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+K +  GN  ++ +        +S+ +  L   +     D I+ +    DA  D  
Sbjct: 4   LMYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGIIYVLPSLDA--DFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC  +F+ ++  + + SF+ ET  GIL  +  ++G++ VDMG
Sbjct: 62  MRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+   IP+     K+  D        +   R    VSMGNPH + F  D +   ++ 
Sbjct: 122 IPNLNSDDIPVKGFSKKVVIDELLNISHENTAYR-INCVSMGNPHCVIFT-DKIDSINIE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+ +CA+VVA+   + 
Sbjct: 180 ADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAATLNNL 239

Query: 242 TNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
            N    V + GG L I W  +  NHVFMTG A+K ++G +++ 
Sbjct: 240 VNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 282


>gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
 gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
          Length = 286

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +  GN  ++ +        +S+ +  L   +     D ++ +    DA  D  +
Sbjct: 1   MYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGVIYVLPSLDA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGNG+RC  +F+ ++  + + SF+ ET  GIL  +  ++G++ VDMG 
Sbjct: 59  RIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMGI 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP+     K+  D        +   R    VSMGNPH + F  D +   ++ +
Sbjct: 119 PNLNSDDIPVKGFSKKVIIDELLNISHENKAYR-INCVSMGNPHCVIFT-DKIDGINIEA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+ +CA+VVA+   +  
Sbjct: 177 DGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAAILNNLV 236

Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           N    V + GG L I W  +  NHVFMTG A+K ++G +++ 
Sbjct: 237 NNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 278


>gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13]
          Length = 279

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 17/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++       N    ++           D ++LI   Q A  D  +
Sbjct: 1   MKFTKMQGIGNDYIYVNCFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE   CGNG RC+ +++       +   T ET  GI    L    ++  S++V
Sbjct: 59  RIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+ IL  + IP+    +   ++ F   PV     L     VS+GNPHA+ F  D +  
Sbjct: 119 DMGKAILTPREIPV----ESDSQEPFVAKPVQVGDRLERLTCVSVGNPHAVVFC-DRVED 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL   G L   H +F + VN    RV    +L +R WERG G T ACG+ ACA+ VA+ 
Sbjct: 174 LDLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAAV 233

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                     + VK+ GG L I +  +  V MTG A++ ++G++++
Sbjct: 234 LNGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279


>gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
 gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
          Length = 278

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 146/283 (51%), Gaps = 16/283 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +VI        N+   A N  +       D ++ I   + A  D  
Sbjct: 1   MMKFTKMHGLGNDFIVIAGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVA--DFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116
           +RIIN DGSE + CGN +RC  +++       ++  T ET+        L   + +   +
Sbjct: 59  MRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQQV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG PIL+   +P     D++      +      F      VSMGNPH + +V DD  
Sbjct: 119 RVDMGAPILNGLQVPTTVDEDRVIEHPIEVDGREFRFT----AVSMGNPHCVIYV-DDAA 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++DLA++G  L  HPMF   +N+    V S E  ++R WERG G T ACG+ ACA+VV+S
Sbjct: 174 NFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATVVSS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
                T+R   V + GG L IEW++ +NHV+MTG A + + G+
Sbjct: 234 VLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGE 276


>gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus]
          Length = 285

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           + +V F+K +G+GN  +++D R   +  +T++   +L         D ++      D  +
Sbjct: 4   TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118
           D  +RIIN DGSE + CGNG+RC+ RFL     +K   +   T+ G ++     DG ++V
Sbjct: 63  DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122

Query: 119 DMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMG P L+   +P     +    + ++   +   +         VSMGNPHA+ FV  D+
Sbjct: 123 DMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKDWEVT----CVSMGNPHAVVFVP-DV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL + G     HP F   +N    +V +   + +  WERG G+T ACG+ ACA VVA
Sbjct: 178 DALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           S      +R  +V + GG L IEW + +  V+MTG A+  ++G
Sbjct: 238 SVLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280


>gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
          Length = 303

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 145/285 (50%), Positives = 193/285 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
 gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
          Length = 278

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D    +  +  + A            D ++ +     A  D  +
Sbjct: 1   MRFSKWQGCGNDFVLVDCFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN----RDGSISV 118
           RI N DGSE + CGNG+RC  R+L      +++ FT ET  GILV +      +   + V
Sbjct: 59  RIFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP+L+ + IP+     +++  +   +    +        VSMGNPH + FVE D   
Sbjct: 119 DMGEPVLEGEKIPVTGFGMNRVIEEDIEVKGKTYK----MTCVSMGNPHCVIFVE-DAEA 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G     HP F    N     V   + + +R WERG  +T ACG+ +CA+ VA  
Sbjct: 174 FPIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
              +T+R V V++ GG L +EW +  NHVFMTG A+  + G++D
Sbjct: 234 LTGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277


>gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
 gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
          Length = 279

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             V F KM G GN  +VID    + ++++  I  L+        DQ++++        D 
Sbjct: 1   MKVRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DGSE   CGNG RC  RF+  +    +     +   G++      DG I  +M
Sbjct: 61  RYHIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G PI     +P        D+++               V+SMGNPHA+  VE+ +    +
Sbjct: 121 GIPIFTPSAVPF-----DTDKEQLEYTLTVSDTSLAMGVLSMGNPHAVIIVEN-VQTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           AS G  +  HP F++ VN+   ++ S + + LR +ERG G T ACG+ ACA+VV     +
Sbjct: 175 ASLGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKN 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             N AV+V + GG L I W  N    +++G     +EG +++
Sbjct: 235 LLNNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276


>gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454]
 gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 136/289 (47%), Gaps = 10/289 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  +V+D      + T   +  L+        DQ++L+       VD
Sbjct: 41  AMKLKFTKMHGAGNDFVVLDGVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVD 100

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+      + ++   +   G++      +G + VD
Sbjct: 101 FKYRIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVD 160

Query: 120 MGEPILDWKLIPLARSFDKMDRD-RFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+L    +P   S     RD    + P++ H   +   VVSMGNPHA+  V DD   
Sbjct: 161 MGAPVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIV-DDADA 219

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G ++  H  F   VN    ++ S   + LR +ERG G T ACGS ACA+VV   
Sbjct: 220 APVNRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGI 279

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
                +  V V+  GG L I W      +  V M G A   +EGK+D+ 
Sbjct: 280 RRGVLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328


>gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
 gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
          Length = 286

 Score =  334 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 16/286 (5%)

Query: 5   MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+   R    + +  A+   +       D ++ I     A  D  
Sbjct: 8   MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116
           +RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  S+
Sbjct: 66  MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 125

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D + 
Sbjct: 126 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRFT----AVSMGNPHCVIYVDDAV- 180

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V+S
Sbjct: 181 NFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 240

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 241 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286


>gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
 gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
          Length = 289

 Score =  334 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + + P F + VN    +V S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289


>gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 281

 Score =  334 bits (858), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 15/283 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61
             + F K +G+GN  ++ID R   + + +  I     D       D ++     Q A+ D
Sbjct: 1   MKIPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQ-AATD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSIS 117
             +RI N DGSE + CGNG+RC+ +F+     +    +++   T+ G ++ +   +  ++
Sbjct: 60  YTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVT 119

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L    IP  L +  +K+      +   + L       VSMGNPH + FV DDL
Sbjct: 120 VDMGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLIT----CVSMGNPHCVTFV-DDL 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G     HP+F +  N+    V   + + +R WERG G+T ACG+ ACA VVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           +    K +R  +V++ GG L I W D +N V+MTG AK  +EG
Sbjct: 235 AVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277


>gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98]
 gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14]
 gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9]
 gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210]
 gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894]
 gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177]
 gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112]
 gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215]
 gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
 gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
          Length = 289

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 285

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 140/286 (48%), Gaps = 15/286 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           +  + F K +G+GN  +++D R      ++ +   AL         D ++ +   Q+   
Sbjct: 2   TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQE-GA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSIS 117
           D  +R+ N DGSE + CGNG+RC+ RFL       +  ++   T+ G +V +   DG ++
Sbjct: 61  DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L  K IP  L    +K+ R    +             VSMGNPH + F+E++ 
Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGREWRVT----AVSMGNPHCVVFLEEEG 176

Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              +L  A+ G L   HP F E  N    +V S   L LR WERG G T ACG+ ACA +
Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           VA+    +     +V++ GG L I W     HV+MTG A   + G 
Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282


>gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1]
          Length = 299

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 13/300 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDM
Sbjct: 61  KYRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP            + +           +V ++GNPHAI  V+D L     
Sbjct: 121 GKPKFEPDQIPFTPKTITKVGRAYRLDV--DGIPVQLYVANIGNPHAIIKVDDVLDADV- 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV       
Sbjct: 178 DRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREG 237

Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK-----TGKWIKKNEDD 293
             +  V ++  + GG L I W D   + MTG     +EG           G  +  N DD
Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297


>gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
 gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
          Length = 290

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 102/276 (36%), Positives = 138/276 (50%), Gaps = 10/276 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KMEG+GN  +V+D    +  +  +    ++        DQI+L+        D   R
Sbjct: 14  PFTKMEGLGNDFVVLDGVRRNFLLDPETCQRIAHRHYGIGCDQILLVEPASSPDCDFRYR 73

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV  CGNG RC   F+       ++S   ET  G L  + + DG+++VDMG P
Sbjct: 74  IFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMGVP 133

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LD   IP  R+    +  R  +G  +H+ L     V MGNPHA+  VE D+    +A  
Sbjct: 134 RLDPADIPF-RAPAAANNYRLDLG-QDHIEL---AAVGMGNPHALLRVE-DVRGAPVAEI 187

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  HP F E  N+    + S  +L LRTWERG G T ACGS ACA+VVA        
Sbjct: 188 GPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGALR 247

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
             V V++ GG L I W     H+ MTG A+  ++G 
Sbjct: 248 ERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDGV 283


>gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 274

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D+   +  ++   I  L+       FDQ++ +    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+  F+  +    ++     T    +V     +  + V+MG 
Sbjct: 61  RIFNADGSEVTQCGNGARCLAHFVRMKKLTNKREIYISTQTSRMVLTIIENNMVRVNMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP      ++++        N++F     +VS+GNPH I  V +++    ++ 
Sbjct: 121 PKFELPQIPF--DMHQIEKKEILYLAKNYIF---GGIVSIGNPHCIMIV-NNVDSAQVSI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  FSE  N+   +V + E + LR +ERGVG T ACGS ACA+V     L   
Sbjct: 175 IGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIRLGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              V V + GG L+I W      ++MTG A   ++G ++
Sbjct: 235 AEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273


>gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
          Length = 289

 Score =  334 bits (858), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
 gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
          Length = 306

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 131/301 (43%), Gaps = 18/301 (5%)

Query: 2   QSSM--VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHD 54
           +++M  + F KMEG GN  + +D       +    I  L+            D ++LI  
Sbjct: 5   RTTMRKIAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILP 64

Query: 55  FQDAS-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111
                  D  +R+ N DGSE + CGN  RCV RF        R     ET+ GI + +  
Sbjct: 65  PTSPDSADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRV 124

Query: 112 RDG-----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNP 165
            D       + VDMG P L  + IP+               P+  L        VSMGNP
Sbjct: 125 DDAGGCPSRVCVDMGTPELARQRIPVCPDTASDPESPCIGQPIRVLDREWTMTCVSMGNP 184

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV DD+   DL   G     HP F    N    ++     + +R WERG G T AC
Sbjct: 185 HAVVFV-DDVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLAC 243

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
           G+ ACA  VA      T R V+V++ GG L I W +   H+ MTG A+  + G+     G
Sbjct: 244 GTGACAVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQG 303

Query: 285 K 285
           +
Sbjct: 304 Q 304


>gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis]
          Length = 303

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 92/293 (31%), Positives = 142/293 (48%), Gaps = 19/293 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           ++ V FAK +G+GN  +++D R   + +     A+     +     D ++     ++   
Sbjct: 16  AAAVKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSEN-GT 74

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGSIS 117
           D  +RI N DGSE + CGNG+RC+ RF+    + +        T+ G++      DG + 
Sbjct: 75  DYSMRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVC 134

Query: 118 VDMGEPILDWKLIPLA---RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           VDMGEPIL    +P        + + + +  +     L       VSMGNPHAI F   D
Sbjct: 135 VDMGEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKEWL----MTCVSMGNPHAITFGLAD 190

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +   DL   G     +P+F    N     V S   + +  WERG G T ACG+ A
Sbjct: 191 GSSIKVDSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGA 250

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA+VVA      T+R+  V + GG L IEW + +NH++MTG A+  + G +D+
Sbjct: 251 CATVVAGVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303


>gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
 gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
          Length = 269

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 140/286 (48%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+ + I     +                       VSMGNPH + FVE D+
Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++ + +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +     T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
 gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
          Length = 289

 Score =  334 bits (857), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 134/291 (46%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDDAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
 gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
          Length = 285

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 131/282 (46%), Gaps = 9/282 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D      + T +   A++        DQ++L+       VD   RI N 
Sbjct: 1   MHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNH 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG P+ + 
Sbjct: 61  DGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPVFEA 120

Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             +P             D  H   +N         VSMGNPHA+  V DD   + +   G
Sbjct: 121 ARLPFVPDGLPTRVEGADTQHALQINGR-TEWLSTVSMGNPHAVQVV-DDAEAFPVLEDG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA       + 
Sbjct: 179 PLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDS 238

Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
            V V   GG L I W  +   V MTG A   +EG LD+   K
Sbjct: 239 PVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLDALK 280


>gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169]
 gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1]
 gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1]
 gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1]
 gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7]
 gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8]
 gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72]
 gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1]
 gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E]
          Length = 299

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 13/300 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D 
Sbjct: 1   MLIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDM
Sbjct: 61  KYRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IP            + +           +V ++GNPHAI  V+D L     
Sbjct: 121 GKPKFEPDQIPFTPKTITKVGRAYRLDV--DGIPVQLYVANIGNPHAIIKVDDVLDADV- 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV       
Sbjct: 178 DRLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREG 237

Query: 241 KTNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK-----TGKWIKKNEDD 293
             +  V ++  + GG L I W D   + MTG     +EG           G  +  N DD
Sbjct: 238 WLDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297


>gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2]
 gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 269

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+ + I     +                       VSMGNPH + FVE D+
Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +     T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
 gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
          Length = 277

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 147/281 (52%), Gaps = 7/281 (2%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           M ++M   F KM G+GN  +V++ R      T+  + A++        DQ++ +   +  
Sbjct: 1   MSAAMGRPFLKMNGLGNDFVVVETRSAPFEPTAAQVRAIADRATGIGCDQLIAVDPAE-- 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             DA +R  N DG EV +CGNG RCV   L     +     ET  G LVA    +  +SV
Sbjct: 59  GADAHVRFWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+W  IPLA   D    D       +   +  P  VSMGNPH +FFV  D    
Sbjct: 119 DMGPPRLEWNEIPLAEPHDTRALDVVLYHHAD--LMAPPGCVSMGNPHVVFFVP-DAEQA 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
             A  G  +  HP+F E VN+  A+V + + + LR WERG GLT ACG+ ACA++VA+  
Sbjct: 176 PAAEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASR 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                R  ++++ GG L +EW  + HV MTG A  +++G+L
Sbjct: 236 RGLIGRHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276


>gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
 gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
          Length = 287

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 10/284 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME +GN  +V+D      ++T + I  L+        DQ+++       + D   
Sbjct: 1   MRFTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV+ CGNG+RC+ RFL             ET   I  A+   DG +SVDMG 
Sbjct: 61  RIFNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP       + ++ + +             VSMGNPHA+  V DD+    +A 
Sbjct: 121 PELEPARIPFQAP---VRQEAYRLATSRGEQT--IGAVSMGNPHAVLRV-DDMTGAPVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + +HP F   VN+    V + + + LR +ERGVG T ACG+ ACA+VVA       
Sbjct: 175 LGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRLRDWL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
           +  V+V++ GG L+I W      V+MTG A+  + G++++    
Sbjct: 235 DAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELPASA 278


>gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
 gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
          Length = 279

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 157/286 (54%), Gaps = 16/286 (5%)

Query: 5   MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+   R    + +  A+   +       D ++ I     A  D  
Sbjct: 1   MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSI 116
           +RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  S+
Sbjct: 59  MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D + 
Sbjct: 119 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRFT----AVSMGNPHCVIYVDDAV- 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V+S
Sbjct: 174 NFDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 234 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279


>gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147]
          Length = 293

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 139/288 (48%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ +   +P   S  +  R+    + P++ +   R   VVSMGNPHA+  V DD   
Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 FPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
              + +  V+V   GG L I W     +N  + M G A   +EG +D+
Sbjct: 240 RRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287


>gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 278

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 154/285 (54%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  LV        DN++  AI           D ++ I     A  D  +
Sbjct: 1   MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RIIN DG+E + CGN +RCV +++     + + S T ET+  G+    L  ++    ++ 
Sbjct: 59  RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPILD   IP   + + +             F      VSMGNPH + +V DD  +
Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKFT----AVSMGNPHCVIYV-DDAPN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+ ++G  L  HP F   +N+  A VT+ + +++R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               T+RA  + + GG L IEW + +NHV+MTG A+  ++G ++I
Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278


>gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
 gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
          Length = 268

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+ + I     +                       VSMGNPH + FVE D+
Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +     T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
 gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
          Length = 286

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 21/289 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  L+ID R   + + T +              D ++ +        D  
Sbjct: 3   LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGT-GESDYR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118
           +R+ N DGS  Q CGNG+RC+ +F+ +   R       +  +T+ G++V +   DG ++V
Sbjct: 62  MRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTV 121

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG+P L  + IP  LA +  K+      +G    L       VSMGNPH + FVE D+ 
Sbjct: 122 DMGKPRLLAQQIPTTLAAADQKVVDVPLTVGDRQWLVT----CVSMGNPHCVTFVE-DVA 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DLA  G     HP F +  N    +V   + L +R WERG G+T ACG+ ACA++VA+
Sbjct: 177 ALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVAA 236

Query: 237 GCL-----HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
                          +V++ GG L I W   + H++MTG A   + G L
Sbjct: 237 VLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285


>gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
 gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
          Length = 303

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 124/296 (41%), Positives = 168/296 (56%), Gaps = 5/296 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M S    F KM G+GN  +V D R     +  +AI AL        FDQ++ +       
Sbjct: 1   MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITVERS-SLG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118
           VDAF+RI N DGSEV +CGN  RC+ R L     +   T ET  G+L A +     S++V
Sbjct: 60  VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAFDADGPRSVTV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V DD+  Y
Sbjct: 120 DMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWV-DDVEAY 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G LL  HP+F E  N+S+A V   + + ++ WERGVGLT ACG+AACA  VA+  
Sbjct: 179 ELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAAR 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
             +T+R  ++ + GG + IEW + +NHV M+G  + E+EG++D+ T  W K    D
Sbjct: 239 DGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294


>gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
 gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
          Length = 296

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 143/292 (48%), Gaps = 13/292 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       ++      L+        DQ++++    +  +D 
Sbjct: 1   MKLRFTKMQGAGNDFVVLDATREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI+N DGSEV+ CGNG RC VR++      K+ +    T  G++  +   DG ++VDM
Sbjct: 61  TYRIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIF----FVEDD 174
           G P+ +   +P  A      + + F + P++         VVSMGNPHA+     F    
Sbjct: 121 GAPVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGG 180

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +A  G L+ +H  F + VN    +V S   + LR +ERG G T ACG+ ACA+VV
Sbjct: 181 VDEAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVV 240

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           A   L        V V   GG L IEW    +  V+MTG A+  + G++D+ 
Sbjct: 241 AGIRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLP 292


>gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803]
 gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803]
          Length = 368

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 143/288 (49%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-----DNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R         +  SD +  +         D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFILVEGRDGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +S++ ET  G+++ +  +DG 
Sbjct: 60  QGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  +++P   S D     R  +         +   V MGNPH +  V DDL
Sbjct: 120 IRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVS--REGLTLSLAAVGMGNPHVVVPV-DDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G  L   P+F    N+   +V   + L++R WERG G T ACG+ ACA++VA
Sbjct: 177 EAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  +  ++   +V + GG L I W D    VFMTG A   ++G ++  
Sbjct: 237 AVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMNPD 284


>gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 407

 Score =  333 bits (855), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 139/296 (46%), Gaps = 21/296 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S  +DF K +G+GN  ++ID R        +  A      +     D ++      DAS 
Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D  +R+ N DGSE + CGNG+RC+ RF++    M  K +   T+ G++  +   DG ++V
Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235

Query: 119 DMGEPILDWKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
           DMG PI +   +P   +     K+ R    +     L       VSMGNPH I F     
Sbjct: 236 DMGMPIFEPSEVPTTLAATQDGKVVRAEMDVDGEKWLVN----AVSMGNPHCITFGRAGG 291

Query: 174 -------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
                   L  + L+  G     HP F    N    +V +   + +  WERG G T ACG
Sbjct: 292 EADGPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACG 351

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           + ACA+VVA     + +R  +V++ GG L IEW + +  + MTG A+  + GK  +
Sbjct: 352 TGACATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGKYFL 407


>gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
 gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
          Length = 269

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T  GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVSA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+ + I     +                       VSMGNPH + FVE D+
Sbjct: 120 VTVDMGSP-LETEEIQWGGKYP-----------------FRSTKVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +     T R   V M GG + IEW++ + H+ MTG A K ++G+++
Sbjct: 221 AFINGLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIE 266


>gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
 gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
          Length = 277

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 106/284 (37%), Positives = 149/284 (52%), Gaps = 18/284 (6%)

Query: 1   MQS---SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ 56
           MQS   + + F KM G+GN  +V+D RG    +T   + AL+       FDQ+ +I D  
Sbjct: 1   MQSNSDTGLPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAIITDG- 59

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
             + D  +   N DGS   +CGN  RC+ R+   R  + S T  T RG+L+A+E  +G  
Sbjct: 60  -GNADLHLTFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLT 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV+MG P+ DW  IPLA   D +              L  P   SMGNPH  FFV DD+ 
Sbjct: 119 SVNMGHPMTDWDEIPLAEDVDTLAL----------PILGAPTATSMGNPHCTFFV-DDVM 167

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DLA+ G  +  HP+F E  N+  A+V   + + +R WERG G+T A GS++CA+ VA+
Sbjct: 168 AIDLAAIGPTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAA 227

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                T   V + + GG L +EW D+  V+MTG     + G L 
Sbjct: 228 YRRGLTRAKVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVLT 270


>gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 277

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +++D R     IT      +        FDQ+ +I    +   DA
Sbjct: 7   TGLPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVI---VNGESDA 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ RFL     +   T  T  G L A++  DG  SV+MG 
Sbjct: 64  HLVFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGH 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  IPLA   D ++      GPV            MGNPH  FFVE D     L  
Sbjct: 124 PQLDWADIPLAEEVDTLEL-PIEGGPV---------ATGMGNPHCTFFVE-DAEAIPLEE 172

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 173 FGARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLT 232

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            R V +++ GG + I+W ++  V+MTG     + G L  +
Sbjct: 233 GRKVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTLTPE 271


>gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
 gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
          Length = 289

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++++        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+T R    ++S   + ++G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ +   +P  A   D        + P++     R    VSMGNPHA+  V DD   
Sbjct: 121 MGAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y + + G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 YPVLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
                +  V+V   GG L I W     +   + M G A   +EG++++
Sbjct: 240 RRGLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287


>gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
          Length = 279

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 143/282 (50%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++++       D++ + +            D ++L+   Q A  D  +R
Sbjct: 5   FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFRMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVD 119
           I N DG+E + CGNG+RC    + +        FT ET  GILV +    GS    + VD
Sbjct: 63  IFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVRVD 122

Query: 120 MGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MGEPIL+ + IP+      ++                +   VSMGNPH + FVE D    
Sbjct: 123 MGEPILEGERIPVLGFGASRVIEQPIEAEGE----TFSMTCVSMGNPHCVIFVE-DAQDV 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  FG LL +H  F +  N+  A +     + +R WERG  +T ACG+ +CA++VA+  
Sbjct: 178 PMEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAAL 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +T R   V++ GG L IEW +N+HV+MTG A+K + G+ +
Sbjct: 238 TGRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279


>gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32]
 gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32]
          Length = 276

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 132/278 (47%), Gaps = 10/278 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+       + S    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V V++ GG L I W      + MTG A   ++G+L 
Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQLS 275


>gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
 gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
          Length = 278

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P    K IP+    +         +    +        + MG PH + FV DD+ 
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTPIEVEGKEYKIT----SLLMGVPHTVLFV-DDVE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+
Sbjct: 174 KVDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T R  +V +  G L IEW D++ VFMTG A++ + G+ 
Sbjct: 234 NLNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGEY 276


>gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453]
 gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453]
          Length = 278

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+       N  S+    L         D ++ I   + A  D  +
Sbjct: 1   MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RI+N DGSE + CGN +RCV +++     + R+  T ETI  G+    L  ++ +  S+ 
Sbjct: 59  RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D + +
Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRFT----AVSMGNPHCVIYVDDAV-N 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F   +N+  A V S + +D+R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               T+R+ ++ + GG L IEW + +NHV+MTG A+  ++G L I
Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278


>gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
 gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
          Length = 269

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/274 (33%), Positives = 131/274 (47%), Gaps = 10/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI N 
Sbjct: 1   MHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF+       + S +  T +G +V     D  ++V+MG P  + 
Sbjct: 61  DGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP    F     ++ +I       L     VSMGNPH    V DD+   D+ + G LL
Sbjct: 121 NKIP----FKAKQTEKTYILRAEDKTLFCG-AVSMGNPHV-VTVVDDVATADVETLGPLL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +  V+
Sbjct: 175 ESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLDEHVT 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           V + GG L I W      +FMTG A   ++G+L 
Sbjct: 235 VHLPGGDLKISWKGPGKPLFMTGPATHVFDGQLS 268


>gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91]
 gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
 gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
          Length = 289

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  +   P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
 gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
          Length = 281

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D RG    +T+  + A++       FDQ+ +I        D 
Sbjct: 17  TFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVI--SDTPDADL 74

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R +  +  +++ T  T RG L A +   G  SV+MG+
Sbjct: 75  HLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMGQ 134

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  IPLA   D +                +P    MGNPH  FFV DD    DLA 
Sbjct: 135 PQLDWHEIPLAEQIDTLQL----------PIDGSPTATGMGNPHCTFFV-DDAEAVDLAM 183

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  HP+F +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 184 RGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGLT 243

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            R V++ + GG L I+W D+  ++MTG     ++G+
Sbjct: 244 GRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQ 278


>gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2]
 gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 283

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      N  +     +S        D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGSE   CGNG+RC+ +++       + + T ET  GI    L  ++ +   + V
Sbjct: 59  AMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVKV 118

Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DM  PI     IP +    D++      +    +    N   +SMGNPH + FV D +  
Sbjct: 119 DMEAPITKASQIPAIYDDLDEVIDQPVIVDGKEY----NITCISMGNPHGVVFV-DSVAD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     HPMF + VN     +   +++ +R WERG G T ACG+ ACAS  AS 
Sbjct: 174 IDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYASY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
              KT + V V +LGG L IE+ +  + +FMTG A   ++G++D+
Sbjct: 234 LNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278


>gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 370

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F K  G+GN  +++D R   +  +T +    L         D ++      +  
Sbjct: 82  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGIN-G 140

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        ++SFT  T  G++V +   DG +
Sbjct: 141 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 200

Query: 117 SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            VDMG+PIL    +P     +K   + +   ++  V+     N   VSMGNPH + F   
Sbjct: 201 KVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVS----WNVTCVSMGNPHCVTFGTK 256

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ 
Sbjct: 257 GGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTG 316

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           ACA VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 317 ACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370


>gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246]
          Length = 280

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 135/282 (47%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  + +D           A+             D ++LI   + A  DA 
Sbjct: 1   MQFTKMHGLGNDYVYVDCVRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV----AKENRDGSIS 117
           +R+ N DGSE + CGNG+RCV +F+  R    +     ET RG+L      +  +   + 
Sbjct: 59  MRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAERVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL+   IP           +                VSMGNPHA+ +  DD+  
Sbjct: 119 VNMGEPILESAKIPTTLPGAPPVNAKLVCAA---PTPWEVTCVSMGNPHAVIYC-DDVAK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G  L   P F   +N+   +V S   + +RTWERG G+T ACG+ AC+  VA  
Sbjct: 175 VELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGACSVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             H+T R +   + GG L +EW + ++ V+MTG A + + G+
Sbjct: 235 LTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPATEVFTGE 276


>gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786]
          Length = 293

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 11/288 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E   G+++     +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+ +   +P   S  +  R+    + P++ +   R   VVSMGNPHA+  V DD   
Sbjct: 121 MGAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIV-DDAEA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 180 FPVLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
              + +  V+V   GG L I W     +N  + M G A   +EG +D+
Sbjct: 240 RRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDL 287


>gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
 gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
          Length = 289

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 133/291 (45%), Gaps = 13/291 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G GN  +V+D        +T   + AL+        DQ++L+        D
Sbjct: 1   MKLSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI NCDG EV+ CGNG RC V+F+       + S   E    ++      +G + VD
Sbjct: 61  FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVVD 120

Query: 120 MGEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           MG P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V DD  
Sbjct: 121 MGAPVFEPARVPFDASGLDGRREGADTLWPLPVNG-VTRWISVVSMGNPHAVQIV-DDAE 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A 
Sbjct: 179 AFAVRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
               + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 239 IRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
 gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
          Length = 278

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 141/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++      +  +  AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GSIS 117
           R+ N DGSE + CGNG+RCV ++      + +   T ET  GIL  +   D       + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L  K IP+    +    +R    P+N L    N    SMGNPH + FV DD+ 
Sbjct: 119 VNMGPPRLTRKEIPMLGEPE----ERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A 
Sbjct: 174 TFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                T + +   + GG L +EW ++ +++MTG A + + G++D+
Sbjct: 234 VLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278


>gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
 gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
          Length = 284

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 16/286 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D  R   +N    +    +       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI + K +  G    +
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  +       +    M      I  + +        VSMGNPH + FV +D+
Sbjct: 120 VTVDMGIPSDEPVNYD-GKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL+S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 TKADLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           +    +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 234 AFLTGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
 gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
          Length = 281

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 15/277 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           SS + F KM G+GN  +V+D RG    +      A++       FDQ+ ++   +    D
Sbjct: 15  SSFLPFMKMHGLGNDFVVVDERGITPRVDKAVAVAIADRHRGVGFDQLAVM--SETPDAD 72

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS+  +CGN  RC+ R +  +    + T +T RGIL AK+  +G  SV+MG
Sbjct: 73  VRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVNMG 132

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW+ +PLA + D ++                P    MGNPH  FFV  D    DLA
Sbjct: 133 QPQLDWQHVPLAHAMDTLEL----------PIKGAPTATGMGNPHCTFFVY-DAEAIDLA 181

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP++ E  N+  A +     L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 182 TKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARRGL 241

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           T+R V++ + GG L I W D+  V+MTG     ++G+
Sbjct: 242 TDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQ 277


>gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
 gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
          Length = 300

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 153/287 (53%), Positives = 197/287 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM G+GN+I+V DMRG  D IT +A   L+ D  T FDQIM IHD + A  D +I II
Sbjct: 7   FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG+E Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
           V + GG L IEW D++HV MTG A+ E+ G  D  TG+W +  ++D+
Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQNDK 293


>gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
 gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
          Length = 277

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG GN  + ++      ++    +    +       D +++I+    A  D  +
Sbjct: 1   MKFTKMEGCGNDYVYVNGFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGSE + CGNG+RCV +++       + + T ET+ GI    L  ++++  ++ V
Sbjct: 59  SMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL+   +P+    DK+  +   +    +        VSMGNPHAI FV DD+   
Sbjct: 119 NMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRIT----CVSMGNPHAITFV-DDIDSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G +  K  +F E VN    +V S + + +R WERG G T ACG+ ACASVVA   
Sbjct: 174 DIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG L IE+  D N V+MTG A+  + G+ +
Sbjct: 234 NGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276


>gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 259

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 9/261 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P    F  +  ++ +I   +   +    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVP----FRAVKAEKTYIMRADEHTVLCG-VVSMGNPHCVIQVE-DVDTAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN 263
           +  V V + GG L I+W   +
Sbjct: 235 SANVRVSLPGGELDIQWDGRD 255


>gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
 gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
          Length = 281

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 146/288 (50%), Gaps = 19/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +V++         ++    A+           D ++L+     A  D
Sbjct: 1   MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
              RI+N DGSE + CGNG+RC+ R++  R  + ++    ET+ GI+V +   D +    
Sbjct: 59  IRWRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVT 118

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMGEP L    IP+             +G      +     +SMGNPH + +V +D
Sbjct: 119 GVCVDMGEPRLQRHQIPMVGPEGPAVNQELVVGDA----VVRVTALSMGNPHCLIYV-ND 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + + G  +  HP F    N+   +V + + + +R WERG G T ACG+ ACA+VV
Sbjct: 174 IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            S     T+R V+V + GG L IEW  +NN V+MTG A + + G+L +
Sbjct: 234 GSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281


>gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium]
          Length = 270

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 17/282 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D    + + +++ I AL+       FDQ+++I       VD  
Sbjct: 1   MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
             I N DGSEV+ CGNG RC  RF+  +    +   + ET  G++    N D S+ VDMG
Sbjct: 61  YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           EP+ +   +PL    + +    + + +G           V S GNPH +  V DD+   D
Sbjct: 121 EPVFNPSDVPLIAPEESLYYSIEGYEVG-----------VFSTGNPHCVMIV-DDVEGVD 168

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + +    + +  +     N+   ++ S   ++LR +ERG G T ACGS ACA+V+    +
Sbjct: 169 VETIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRI 228

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +  V+  + GG  LIE++   HVF++G A+  +EG +D+
Sbjct: 229 GQLDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270


>gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
 gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
          Length = 279

 Score =  332 bits (851), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 16/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G GN  + ++      +  ++    +S  +     D ++LI   + A  D  +
Sbjct: 1   MKFAKMHGAGNDYVYVNCFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      +++K  T ET  GIL  +      ++   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERVR 118

Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P L    IP+  S ++ +      +         +   VSMGNPH I FV D++ 
Sbjct: 119 VNMGKPRLTRGEIPMTGSPEEQVINAELKVLDR----TFHITCVSMGNPHCIIFV-DNVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +A +G ++   PMF    N+    + S   +  RTWERG G T ACG+ + A  VA 
Sbjct: 174 EFPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGTGSSAVTVAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +T R +   +LGG L +EW ++  V+MTG A + +EG  D +
Sbjct: 234 VLNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFDPQ 279


>gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
          Length = 278

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 145/283 (51%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG+P    K IP+    +         +    +        + MG PH + FV DD+ 
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIEVEGKEYKIT----SLLMGVPHTVLFV-DDVE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS
Sbjct: 174 KVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T + V+V +  G L IEW D+  VFMTG A++ + G+ 
Sbjct: 234 NLNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGEY 276


>gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
 gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
          Length = 277

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 108/275 (39%), Positives = 143/275 (52%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G GN  +V+D R    ++   A   ++        DQI+LI   +D    AF+R
Sbjct: 6   PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   L      +  T  T  G+L A+      + VDMG P L
Sbjct: 64  ILNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA   D +   R  +GPV      NP   SMGNPHA FFV DDL H  + + G 
Sbjct: 124 GWEDIPLAEPADTLSL-RLALGPVQ-----NPAACSMGNPHATFFV-DDLTHLQIETIGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R 
Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
 gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
          Length = 266

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 136/284 (47%), Gaps = 28/284 (9%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ++ +R   DN    ++           D ++LI     A  D  +
Sbjct: 3   IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RI N DGSE + CGN  RC+ ++L       +     ET+ GI +        N   S++
Sbjct: 61  RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P                  D   +             VSMGNPH + FV D++  
Sbjct: 121 VDMGIPT-----------------DIHEVALGEGYIASKGIAVSMGNPHLVIFV-DEINK 162

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  L  HP+F + VN+   +V +   + +R WERG G+T ACG+ ACA+ VAS 
Sbjct: 163 IKLEEVGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASA 222

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  R  S+ M GG L IEW  +NH++MTG A K ++GK++I
Sbjct: 223 FTDRCGRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266


>gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
 gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
          Length = 266

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R     +T     A++        DQ+++I D  DA  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           ++I N DGSEV++CGN  RCV  F+         T  T  G+L A+   DG  SVDMG P
Sbjct: 59  MQIFNADGSEVEACGNATRCVPLFI-----GHDVTIRTRAGLLDARLI-DGGASVDMGAP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPLA + D +        P +   L  P  V++GNPH IFFV DDL   D A  
Sbjct: 113 RFDWNAIPLAYAMDTLTM------PASWEDLPAPAAVNVGNPHVIFFV-DDLDAVDTARL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G ++ + P+F + VN++ A+V     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L+I+W     + MTG A   ++G+ D
Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262


>gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
 gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
          Length = 266

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F+      +    ET  G+L AK   DG  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLFV-----GRDVLIETKAGLLDAK-AVDGGASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPLA + D +        PV+   L  P  V++GNPH IFF+ DDL   +    
Sbjct: 113 RLEWDAIPLAYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFL-DDLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5]
          Length = 284

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 142/286 (49%), Gaps = 17/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++         +     +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+   CGNG+RCV +++     + + S +  T  GI    L  ++ +   + V
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL  K IP+    +++      +    +    +   VSMGNPHAI +V DD+   
Sbjct: 119 NMGSPILTAKEIPVVAETEQVIDAPITVDGKEY----HMTAVSMGNPHAIIYV-DDVNSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H  F + VN    +V    ++ +R WERG G T ACG+ ACA  VAS  
Sbjct: 174 DLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGACAVTVASIL 233

Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             K +  + V+V++LGG L I W  + + V+MTG A   ++G++D+
Sbjct: 234 NDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279


>gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
 gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
          Length = 380

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 140/288 (48%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R     +       + +  L         D ++L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +++  ET+ G++V +   DG 
Sbjct: 61  E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG+P L+   +P      +    +  I             V MGNPH +  V+ DL
Sbjct: 120 IRVDMGKPFLNSDQVPTNLPQGRSGLPQGEIDLQG--STLQLAAVGMGNPHVVVPVQ-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G+ L    +F    N+    V    +L++R WERG G T ACG+ ACA++VA
Sbjct: 177 KSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L  +    +VK+ GG L I W D    VFMTG A   ++G L+ +
Sbjct: 237 ASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLNPE 284


>gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
 gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
          Length = 277

 Score =  331 bits (850), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 107/275 (38%), Positives = 141/275 (51%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G GN  +V+D R    ++   A   ++        DQI+LI    D    AF+R
Sbjct: 6   PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIEP--DDGAAAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   L      +     T  G+L A+      + VDMG P L
Sbjct: 64  ILNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA   D +   R  +GPV      NP   SMGNPHA FFV DDL H  + + G 
Sbjct: 124 GWEDIPLAEPADTLSL-RLALGPVQ-----NPAACSMGNPHATFFV-DDLTHLQIETIGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R 
Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 274

 Score =  331 bits (849), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  ++ID    + ++TS+ I  LS       FDQ++++    D ++D   
Sbjct: 1   MRFTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV  CGNGMRCV +F  L     +++    T    ++     D  +SV+MG 
Sbjct: 61  RIYNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D KLIP   S       + +I  +    +    VVSMGNPH I  VE  + +  + S
Sbjct: 121 PIFDPKLIPFYIS----QYQKTYILFLPTQIILCG-VVSMGNPHCIILVE-KIENIQVTS 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ L  H  F E VN+S  ++ +  ++ LR +ERGVG T ACG+AACA+V         
Sbjct: 175 LGSALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             +V+V + GG + + W   +N ++MTG     ++G +++
Sbjct: 235 YESVNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274


>gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
 gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
          Length = 285

 Score =  331 bits (849), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           S + F K +G+GN  +++D R      +T +   AL         D ++ +   Q+   D
Sbjct: 3   SRLSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQE-GAD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118
             +R+ N DGSE + CGNG+RC+ RFL       +  ++   T+ G +V +   DG ++V
Sbjct: 62  FSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTV 121

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--D 174
           DMG P L    IP  LA+  +K+ R    +G            VSMGNPH + F+E+   
Sbjct: 122 DMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGREWAVT----AVSMGNPHCVVFLEEGGS 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L   DL   G L   HP F E  N   A+V     L LR WERG G+T ACG+ ACA++V
Sbjct: 178 LEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACAALV 237

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
           A+    +     +V++ GG L I W  +  HV+MTG A   + G 
Sbjct: 238 AAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282


>gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 278

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D ++L+ +   A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    +   +   N         + MG PH I FV DD+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               T R  +V +  G L I+W D++ VFMTG A++ + G+ 
Sbjct: 235 LNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGEY 276


>gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
 gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
          Length = 288

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 135/289 (46%), Gaps = 10/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D       +T + + AL+        DQ++L+        D 
Sbjct: 1   MKLPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC VRF+  +    + +   +   G+L      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ +   +P  A   D        + P+      R   VVSMGNPHA+  V DD+  +
Sbjct: 121 GSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVV-DDVETF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A  G L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A   
Sbjct: 180 PVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283
               +  V+V+  GG L I W         + M G A   +EG  ++  
Sbjct: 240 RGLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA 288


>gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
 gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
          Length = 266

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 106/277 (38%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F+      +    ET  G+L AK   DG  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLFI-----GRDVLIETKAGLLDAK-AVDGGASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPL+ + D +        PV+   L  P  V++GNPH IFFV DDL   +    
Sbjct: 113 RLEWDAIPLSYAMDTLTM------PVSWEDLPAPVAVNVGNPHVIFFV-DDLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37]
 gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37]
          Length = 279

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 18/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
           +++ + F KM G+GN  +VID R     +T + A+          FDQ+ LI      + 
Sbjct: 8   RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPG--GNA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +  +N DGS   +CGN  RC+ R L +   +      T  G L A +  +G  SV+M
Sbjct: 66  DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+LDW+ IPLA   D +                +P   SMGNPH  FFV  D    DL
Sbjct: 126 GPPVLDWQNIPLASEVDTLHL----------PIDGDPVATSMGNPHCTFFVA-DAEAVDL 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG  +  HP++ +  N+ +A +   + L +R WERG GLT A GS++CA+ VA+    
Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
            T RAV + + GG L ++W ++  V+MTG     + G L   T +W+
Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277


>gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
 gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
          Length = 275

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 144/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PILD   IP      K     + +      FL     VSMGNPH +  V DD+    +A
Sbjct: 121 VPILDPAQIPFKA---KKFEKTYLLQSAQQTFLCG--AVSMGNPHVVLEV-DDITQAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L +H  F +GVN+   +V + + + LR +ERG   T ACGS ACA+ V      K
Sbjct: 175 DVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               V V + GG L I W  +   ++MTG A++ ++G++ +
Sbjct: 235 LGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275


>gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 297

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 129/284 (45%), Gaps = 10/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM+G+GN  +V D      ++  + +  ++        DQI+L+        D 
Sbjct: 11  SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDF 70

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV  CGNG RC   F+       +   T ET  G L+     +G+I+V M
Sbjct: 71  RYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    +P      + D +                 V MGNPHA+  V        +
Sbjct: 131 GVPRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVAS-AAEAPV 184

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA     
Sbjct: 185 ATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWD 244

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           + + AV+V + GG L IEW    H V MTG A+  ++G   +  
Sbjct: 245 ELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 288


>gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
 gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
          Length = 278

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 136/284 (47%), Gaps = 12/284 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VD 61
             ++F KM G+GN  +VID       +    +  L+        DQI+L+    D +   
Sbjct: 1   MRLEFTKMHGLGNDFVVIDGTRQDVRLDEATLRQLADRHFGIGCDQILLVEPPGDPTQAL 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+  +   + +    ET+ G +V     D  + V+
Sbjct: 61  FRYRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+P+   + IPL    +    D + +    H        VSMGNPHA+  V DD+    
Sbjct: 121 MGQPVFTPEQIPLVAEHEA---DAYTLDVQGHAITLG--AVSMGNPHAVLLV-DDVASAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F   VN+  A +     +DLR +ERGVG T ACGS A A++      
Sbjct: 175 VTEVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRRR 234

Query: 240 HKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
           +  +  V V + GG L++ W       V++TG A   + G +D+
Sbjct: 235 NLVDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278


>gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
 gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
          Length = 284

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 16/286 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D  R   +N    +    +       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI + K +  G    +
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  +       +    M      I  + +        VSMGNPH + FV +D+
Sbjct: 120 VTVDMGIPSDEPVNYD-GKGSKPMTEHPIEIDGIRY----TGTTVSMGNPHLVIFV-NDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL+S G  L  HP+F +  N+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 TKVDLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           +    +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 234 AFLTGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
 gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
          Length = 294

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 149/290 (51%), Positives = 194/290 (66%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD +      
Sbjct: 2   ASTAPFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAY 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++ I+N DG+  Q+CGNGMRCVV+ L +   +K+FTFET  GIL A+E+ DG+ISVDMG 
Sbjct: 62  YVDILNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGM 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L  
Sbjct: 122 PHFGWQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+    +T
Sbjct: 182 FGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRT 241

Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+V++    GG L +EW DN+HV +TG A+ E+ G  D  TG W +  E
Sbjct: 242 GRSVNLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291


>gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21]
 gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21]
          Length = 278

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++      +  +  AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +   T ET  GIL  +       +   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L  K IP+    +    +R    P+N L    N    SMGNPH + FV DD+ 
Sbjct: 119 VNMGPPRLTRKEIPMLGEPE----ERVVNVPLNVLHSSFNITCASMGNPHCVIFV-DDVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A 
Sbjct: 174 SFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                T + +   + GG L +EW ++ +++MTG A + + G++ +
Sbjct: 234 VLNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278


>gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
 gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
          Length = 301

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I 
Sbjct: 5   VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P  
Sbjct: 65  IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 125 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R 
Sbjct: 185 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 244

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +   +
Sbjct: 245 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 292


>gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12]
 gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12]
          Length = 280

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 5/280 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLANRHFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+   IP      +           + +       VS+GNPH +  VE D+   D+ 
Sbjct: 121 IPILEPSKIPFNAKRAEKTYLLQTDTAESKMQTFLCGAVSLGNPHCVLDVE-DVQATDVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+ V      K
Sbjct: 180 GIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            +  V V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 240 LDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279


>gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
 gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
          Length = 360

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 129/285 (45%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R               +  L         D +++      A
Sbjct: 1   MLQFSKYQGLGNDFILLEGRSGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVALPPAAA 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +++  ET  G+++     DG 
Sbjct: 61  G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTLLADGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  + +P A         +  +               MGNPH +  V DDL
Sbjct: 120 IQVDMGRPFLQPEQVPTALPVGAAGLPQGEVELDGRRLAL--AAAGMGNPHVVVTV-DDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G  L   P+F    N+   +V S   L +R WERG G T ACG+ ACA++VA
Sbjct: 177 DQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L        V + GG L I W D +  + MTG A+  ++G L
Sbjct: 237 AHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281


>gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021]
 gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021]
          Length = 306

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I 
Sbjct: 10  VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P  
Sbjct: 70  IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 130 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R 
Sbjct: 190 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 249

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +   +
Sbjct: 250 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 297


>gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
 gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
          Length = 277

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++       + +  AI           D ++LI     A  D F+
Sbjct: 1   MKFTKMEGLGNDYVYVNCLEEQIADPSKTAIEVSDRHFGIGSDGLILIKPSDKA--DFFM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSISV 118
            + N DGS+ + CGNG+RCV +F+       +   T +T+ GI     N       S+ V
Sbjct: 59  EMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P     LIP+    D +    F  G   +        VSMGNPH I ++ DD+ + 
Sbjct: 119 NMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRIT----CVSMGNPHCITYM-DDIKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G +     +F + VN     V   ++L +R WERG G T ACG+ ACA  VAS  
Sbjct: 174 EIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
               N +V+VK+LGG L I W  + + V+M G A   + G+
Sbjct: 234 NGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGE 274


>gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
 gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
          Length = 282

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 11  MEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V+D        +T   + AL+        DQ++L+        D   RI N
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           CDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P+  
Sbjct: 61  CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120

Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              +P  A   D     R  + P++     R    VSMGNPHA+  V DD+  Y +   G
Sbjct: 121 PAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVLEEG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A       + 
Sbjct: 180 PLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239

Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282


>gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
 gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
          Length = 298

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 146/287 (50%), Gaps = 24/287 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC--------HDNITSDAINALS-TDDNTHFDQIMLIH 53
           ++ + F KM G+GN  +V+D R             +T     A+        FDQ+ +I 
Sbjct: 19  TNGLPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQLAVI- 77

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                + DA +   N DGS   +CGN  RC+ RFL     + S    T RG L A++  D
Sbjct: 78  --TTGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAAQDMGD 135

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +V+MG+P LDW+ IPLA + + ++       P++      P    MGNPH  FFV  
Sbjct: 136 RLTAVNMGQPQLDWQDIPLAHAMETLEL------PIDGA----PTATGMGNPHCTFFVA- 184

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL   DL  FG  +  HP++ E  N+ IA++   + + +R WERGVG+T A GS++CA+ 
Sbjct: 185 DLAAIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSSSCATA 244

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           VA+     T R V + + GG L I+W ++  V+MTG     + G L 
Sbjct: 245 VAAARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTLT 290


>gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
 gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
          Length = 288

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN------THFDQIMLIHDFQDASVD 61
           F KM G+GN  +VI       + T + I A++             DQ++ I   +     
Sbjct: 5   FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A++R  N DG    +CGNG RCV   L     + +  F+T+ G L      D  ++VDMG
Sbjct: 65  AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P LDW  IPLA   +  +R    +GP++   +  P  VSMGNPH +FFV+  +      
Sbjct: 125 PPGLDWTQIPLAEEMNT-ERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+L+  HP+F EGVN+  A + S + + L+ WERG GLT ACG+ ACA+ VA+     
Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           T+R   V+   G L IEW + + HV MTG    E+ GKL
Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282


>gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
 gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
          Length = 280

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 18/288 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++       +    A    +       D ++LI   + A  D
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +        
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119

Query: 116 ISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P+L +   I  A     M  +        +        V MGNPH + FV DD
Sbjct: 120 VTVDMGTPLLSNPGQI--ATKTGGMLAETILADGKEYK----GTFVCMGNPHVVIFV-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+ V
Sbjct: 173 IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           A+   HK  R   V+M GG L I W + + HV+MTG A K +EG++++
Sbjct: 233 AAVLNHKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIEM 280


>gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
 gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
          Length = 284

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 138/279 (49%), Gaps = 14/279 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVD 61
           + + F KM G+GN  +V+D R    ++T      ++       FDQ+ LI   + ++  D
Sbjct: 10  TPLPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPAD 69

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS   +CGN  RCV R L +   +      T RG L+A ++ DG  SV+MG
Sbjct: 70  AHLLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMG 129

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L W  +PLA   D ++                P    MGNPH  FFVE+      L 
Sbjct: 130 QPQLLWDQVPLAEEVDTLEL----------PIEGGPTATGMGNPHCTFFVEN-ADLIPLE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            FG     HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     
Sbjct: 179 EFGPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGL 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           T R V V + GG L I+W ++  V+MTG       G   
Sbjct: 239 TGRKVQVDLDGGTLWIDWREDG-VWMTGPTMHVSSGSFT 276


>gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
 gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/287 (51%), Positives = 190/287 (66%), Gaps = 1/287 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA+I 
Sbjct: 10  VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   +K+F F T+ G+L A+E+ DG ISVDMG P  
Sbjct: 70  IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+     +T+R 
Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +   
Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAA 296


>gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
 gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
          Length = 280

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 18/288 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++           A    ST       D ++LI   + A  D
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +        
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119

Query: 116 ISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P+L +   I  A     M  +        +        V MGNPH + FV DD
Sbjct: 120 VTVDMGTPLLSNPGQI--ATKTGGMLAETIPADGKEYK----GTFVCMGNPHVVIFV-DD 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+ V
Sbjct: 173 IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           A+   HK  R   V+M GG L I W++ + HV+MTG A K +EG++++
Sbjct: 233 AAVLNHKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIEM 280


>gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
 gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
          Length = 280

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 142/280 (50%), Gaps = 5/280 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    ++     T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP      +         P + +       VSMGNPH +  VE D+   D+ 
Sbjct: 121 IPVLEPGRIPFNAKKMEKTYLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIEAADVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F +GVN+   ++ +   + LR +ERG   T ACG+ ACA+ V      K
Sbjct: 180 GIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            +  V V + GG L I W  +   ++MTG A+  ++G++ 
Sbjct: 240 LDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQIQ 279


>gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 288

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 129/284 (45%), Gaps = 10/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM+G+GN  +V D      ++  + +  ++        DQI+L+        D 
Sbjct: 2   SALRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG+EV  CGNG RC   F+       +   T ET  G L+     +G+I+V M
Sbjct: 62  RYRIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    +P      + D +                 V MGNPHA+  V        +
Sbjct: 122 GVPRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVAS-AAEAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA     
Sbjct: 176 ATLGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWD 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           + + AV+V + GG L IEW    H V MTG A+  ++G   +  
Sbjct: 236 ELDHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 279


>gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
 gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
          Length = 288

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 139/288 (48%), Gaps = 12/288 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +T + + AL+        DQ++L+       VD 
Sbjct: 1   MKLPFTKMQGAGNDFVVLDGTAGDLGLTPERVRALADRHFGIGADQLLLVERPSLDGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+  +    + +   +   G++      +G + VDM
Sbjct: 61  KYRIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P      +  +   D  +   VN    R   VVSMGNPHA+  V DD   
Sbjct: 121 GSPVFEPARVPFDVAGLAGRRDGADTVYPLEVNG-ATRWISVVSMGNPHAVQLV-DDAEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A  
Sbjct: 179 FAVLEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                +  V+V+  GG L I W         ++M G A   ++G +++
Sbjct: 239 RRGLLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIEL 286


>gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 285

 Score =  329 bits (845), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 143/291 (49%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +  S     +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SIS 117
            + N DGS+   CGNG+RCV ++      + + S +  T  GI  L     +DG    + 
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVALVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL  + IP+  + +++  +  H+    +    +   VSMGNPHAI ++ D L +
Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVINEPLHVDGETY----HITAVSMGNPHAIVYM-DALKN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  VAS 
Sbjct: 174 LDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233

Query: 238 CLHKTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGK 285
                +    V+VK+LGG L I W    N V+MTG A   ++G++D+ + +
Sbjct: 234 LNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSSLE 284


>gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047]
          Length = 261

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +VID+   +  +    I           FDQ++++   Q    D   RI N DGSEV+ C
Sbjct: 1   MVIDLVSQYVKLKPHLIPRWADRHFGIGFDQLLVVEPPQSPKADFRYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC   F+  +    +K    ET  G++      +  ++VDMG P L    IP    
Sbjct: 61  GNGARCFALFVRDKKLTNKKHLIVETKGGVIELHVTNNNEVTVDMGVPTLQPSKIP---- 116

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F+  ++   +I  +N   L +   VSMGNPH +  VE D+   D+ + G L+  H  F +
Sbjct: 117 FEAKEQAISYIIDINGQPL-DISAVSMGNPHGVTLVE-DVKTADVETLGPLVEGHSRFPQ 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
             N    ++ S   + LR +ERG G T ACG+ ACA+VVA         +V+V + GG L
Sbjct: 175 RTNAGFMQIISPSEIRLRVYERGAGETLACGTGACAAVVAGRLRGLLEESVTVHLPGGSL 234

Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            I W  +   V MTG  KK +EG++ +
Sbjct: 235 NIVWPGEGQPVKMTGPCKKVFEGRIYL 261


>gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
 gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
          Length = 283

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 16/286 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             ++F KM GIGN  + +D         +     +S        D +++I   + A  D 
Sbjct: 1   MKINFTKMHGIGNDYVYVDGFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSI 116
            +R+ N DGSE + CGN  RC+ +F+       +K+ + ET+ GI    L  ++ +   +
Sbjct: 59  RMRMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+ IL  + IP+    +        I       +     VSMGNPH + + E D+ 
Sbjct: 119 EVDMGKAILSPQDIPVISDQETFINTPISIDNE----IYYGTCVSMGNPHVVVYCE-DVD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L S G     +P+F E +N    ++    ++ +R WERG G T ACG+ ACA  V+ 
Sbjct: 174 LLSLESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACAVAVSC 233

Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 K N  ++VK+ GG L I + ++  V M G A K ++G ++
Sbjct: 234 VLNGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279


>gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
 gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
          Length = 282

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 11  MEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V+D        +T   + AL+        DQ++L+        D   RI N
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           CDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P+  
Sbjct: 61  CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120

Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              +P  A   D     R  + P++     R    VSMGNPHA+  V DD+  Y +   G
Sbjct: 121 PAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVV-DDVEAYPVLEEG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A       + 
Sbjct: 180 PLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239

Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282


>gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
 gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
          Length = 275

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 146/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+++   IP    F     ++ ++             +SMGNPH +  VE D+   ++ 
Sbjct: 121 VPVIEPSQIP----FKAKKSEKTYLLQTPMQ-TYLCGAISMGNPHCVIQVE-DVQTVNVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ L +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+        K
Sbjct: 175 EIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQDK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            ++ V V + GG L+I W  +   ++MTG A+  ++G++ +
Sbjct: 235 LDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275


>gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1]
          Length = 274

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 98/280 (35%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     DG I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +  K +++      V  +       VSMGNPH +  V DD+   ++A 
Sbjct: 121 PIWEPNKIPFTAN--KFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DDIETANVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274


>gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512]
          Length = 351

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 150/293 (51%), Positives = 199/293 (67%), Gaps = 5/293 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 52  SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V++D+  YDLA 
Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +  
Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDA 344


>gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
 gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
          Length = 311

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 11/287 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            + F KM G GN  +V+D        +T   + AL+        DQ++++        D 
Sbjct: 24  KLSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALANRHFGIGADQLLVVEKPTVDGADF 83

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDM
Sbjct: 84  KYRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 143

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ +   +   A   +     R  + P++     R    VSMGNPHA+  V DD   Y
Sbjct: 144 GAPVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVV-DDAEAY 202

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G L+ +H  F + VN    ++ S   + LR +ER  G T ACG+ ACA+V A   
Sbjct: 203 PVLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAGIR 262

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
               +  V+V   GG L I W     +   + M G A+  +EG++D+
Sbjct: 263 RGLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDL 309


>gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601]
 gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601]
          Length = 279

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T     A++       FDQ+ LI        DA +
Sbjct: 11  LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALIE---TGEGDARL 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +   T  T RG L A++  DG  SV+MG P 
Sbjct: 68  TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D +                 P    MGNPH  FFVE+     DL +FG
Sbjct: 128 LDWQDIPLASEMDTLAL----------PIEGTPVATGMGNPHCTFFVEN-AEAIDLEAFG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A +   + L +R WERGVG+T + GS++CA+ VA+     T R
Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V++++ GG L I+W D+  V+MTG     ++G        W++  
Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSFGP---AWLEAA 278


>gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 301

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 151/298 (50%), Positives = 197/298 (66%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G LD  TG W +    +  
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSRDGTQEAG 299


>gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N]
 gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N]
          Length = 298

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 9/282 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D      ++T +   AL         DQI+L+        D   R
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGVGADQILLVEPATRPDADFRYR 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    +     E + G++V  E  D  ++V+MG  
Sbjct: 70  IFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEMGTT 129

Query: 124 ILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             D   +P      +  +  +D  ++ P+    +     V++ NPHA+  V  D+    +
Sbjct: 130 RFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIEL-SAVAISNPHAVQVVA-DVDQAPV 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           +  G  +  HP F+  VN    ++    ++ LR +ERG G T ACG+ ACA+V A     
Sbjct: 188 SEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGIRRG 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  V V+  GG L I W+    + MTG A+  + G++DI 
Sbjct: 248 LLDSPVRVQTRGGALTIAWN-GEQLRMTGPAESVFSGQVDID 288


>gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 287

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 140/286 (48%), Gaps = 13/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + I+      +   +    +S        D ++LI     A+ D  +
Sbjct: 5   LRFTKMQGIGNDYVYINGFQERIDSPGELARKISDRHFGIGSDGLVLILPS--ATADVRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKEN-RDGSI---SV 118
           R+ N DGSE + CGN +RCV +++       +   T ET  G+ + +     G +   +V
Sbjct: 63  RMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGATV 122

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMGEP L    IP+   +     + RF   PV+ +  L     VSMGNPHA+ F++  + 
Sbjct: 123 DMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG-ID 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G     HP+F +  N   A V S   + +R WERG G T ACG+ ACA  VA 
Sbjct: 182 DLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVAVAC 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                  R V V++ GG L I W + +NHV+MTG A   + G+  I
Sbjct: 242 VLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287


>gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
 gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
          Length = 274

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 138/281 (49%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +     + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MHFSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     DG I V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PI +   IP  A  F+K    R  I  V          VSMGNPH +  VE D+   ++A
Sbjct: 121 PIWEPAKIPFNANKFEKNYILRTDIQTV------LCGAVSMGNPHCVIQVE-DIKTANVA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+         
Sbjct: 174 QLGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 234 LDSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274


>gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
 gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
          Length = 261

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 10/266 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + + I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCITQNVFFSPELIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+       + S +  T +G ++     D  + V+MG P  +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKYSLSVSTKKGKIILSIEEDDQVCVNMGVPEFEPSKIP---- 116

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F     ++ +I  V+   L     VSMGNPH +  VE D+   ++   G LL  H  F E
Sbjct: 117 FRAKQAEKTYIMRVDEQTLFCG-AVSMGNPHVVTVVE-DIATAEVERIGPLLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    +V + + ++LR +ERG G T ACGS ACA+V         +  V+V + GG L
Sbjct: 175 RVNAGFMQVVNRQQINLRVYERGAGETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRL 234

Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLD 280
            I W      ++MTG A   ++G+L 
Sbjct: 235 EISWQGPGQPLYMTGPATHVFDGQLS 260


>gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 301

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/297 (50%), Positives = 198/297 (66%), Gaps = 5/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++   + 
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREA 298


>gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
 gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
          Length = 269

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 29/288 (10%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R         AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
             +RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+   I     F  +                    VSMGNPH + FV DD+
Sbjct: 120 VTVDMGVP-LETGTIDFDGEFPFL-----------------STQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++    ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RTVNLSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 276

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 101/283 (35%), Positives = 151/283 (53%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V    +   +N++  AI+  +       D ++ I   ++A  D  +
Sbjct: 1   MEFTKMHGLGNDFIVFAGHQQLPENVSQLAIDLCNRFFGIGADGLVYILPSENA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI-RGI----LVAKENRDGSIS 117
           RIIN DGSE + CGN +RCV +++           T ETI  G+    L  K+ +  ++ 
Sbjct: 59  RIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVATVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   +P     D++      +      F      VSMGNPH + +V DD  +
Sbjct: 119 VDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSFT----AVSMGNPHCVIYV-DDAAN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HPMF   +N+    V S    D+R WERG G T ACG+ ACA+VV+S 
Sbjct: 174 FDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               T+R  +V + GG L IEW + +NHV+MTG A + + G  
Sbjct: 234 LNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276


>gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera]
          Length = 307

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 143/294 (48%), Gaps = 19/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F K  G+GN  +++D R   +  +T +    L         D ++      +  
Sbjct: 19  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPGIN-G 77

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+        ++SFT  T  G++V +   DG +
Sbjct: 78  TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 137

Query: 117 SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            VDMG+PIL    +P     +K   + +   ++  V+     N   VSMGNPH + F   
Sbjct: 138 KVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVS----WNVTCVSMGNPHCVTFGTK 193

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                 +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ 
Sbjct: 194 GGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTG 253

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           ACA VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 254 ACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307


>gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
 gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
          Length = 269

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R         AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
             +RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P             D +D D          F      VSMGNPH + FV DD+
Sbjct: 120 VTVDMGVP----------LETDTIDFD--------GEFPFLSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
          Length = 285

 Score =  328 bits (842), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 12  MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 71

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T +G +V     DG I V+MGE
Sbjct: 72  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 131

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +  K +++      V  +       VSMGNPH +  V D++   ++A 
Sbjct: 132 PIWEPNKIPFTAN--KFEKNYILRTDVQTVLCG---AVSMGNPHCVVQV-DNIETANVAE 185

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 186 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 245

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 246 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285


>gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
 gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
          Length = 278

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +    AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEETVADPRQVAIQVSNRNFGIGSDGLILIMPSTTA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++      + +K  T ET  GIL  +     + +   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKVR 118

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           V+MG P L    IP+   +  ++  ++  I         N    SMGNPH + FV DD+ 
Sbjct: 119 VNMGPPRLARSEIPMRGDAAPQVVGEQLTILDR----TFNITCASMGNPHCVIFV-DDVA 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + ++++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A 
Sbjct: 174 GFPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTAAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 234 VLNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276


>gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
 gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
          Length = 325

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 120/279 (43%), Positives = 161/279 (57%), Gaps = 6/279 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +  +   A++ D  + FDQ+M++HD      DAF+RI
Sbjct: 38  RFLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRI 97

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV   +          +      ET  G+L  +   + + +VDM
Sbjct: 98  YNTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDM 157

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPL+  F    R    IGP++   L +P  V+MGNPHA+FFVE D   +DL
Sbjct: 158 GRPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDL 217

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G +L  HP+F E  N+S+A+VT  E++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 218 ARIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLR 277

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              R  SV + GG L +EW  ++HV MTG      EG L
Sbjct: 278 MIGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316


>gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
 gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
          Length = 275

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 107/283 (37%), Positives = 154/283 (54%), Gaps = 14/283 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
            ++DF KM G+GN  +V D R      ++     A++        DQ++++     A  D
Sbjct: 1   MLIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           AF+RI N DGSE  +CGN  RCV   L           ET+ G+L+A+ N +G I +DMG
Sbjct: 59  AFMRIYNPDGSESGACGNATRCVADLLHRDGIAAP-CMETVAGLLLAEINGNG-ICIDMG 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L W+ +PLAR  D +        P+    L+ P   SMGNPHA FFV  DL   D+ 
Sbjct: 117 QPGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFVA-DLAELDIP 169

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +HP+F E  N+  A++ S   + LR WERG GLT ACG+ ACA++V +     
Sbjct: 170 VTGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGL 229

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
             R   V++ GG LLI W + + HV MTG A   + G++ +++
Sbjct: 230 AEREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272


>gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
          Length = 277

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 108/281 (38%), Positives = 156/281 (55%), Gaps = 7/281 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           MQ+S   F KM G GN  +V++         +D + AL+       FDQ++ I     A 
Sbjct: 1   MQAST-PFVKMNGAGNDFVVVNALETPFTPDADRVRALADRRTGEGFDQLIAIEPSDRA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DAF+R+ N DG  V++CGN +RCV   L       S T +T+ G  +A+      ++VD
Sbjct: 59  -DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P LDW+ IPLA + D    +   IGP++   +  P  VSMGNPH +FF  D L    
Sbjct: 118 MGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFT-DRLDDVF 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+++  HP+F +GVN+  A V + + + LR WERG GLT ACG+ ACA++VA+   
Sbjct: 176 VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAASRR 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             T R+ +V + GG L I+W +   HV MTG  + E  G+L
Sbjct: 236 GLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276


>gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
 gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
          Length = 297

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 124/276 (44%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T+    A+++     +DQ+M++   +    +AF+RI 
Sbjct: 16  FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L        G  SVDMG P   
Sbjct: 76  NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD++ YDLA FG L
Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDIHAYDLARFGPL 194

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R V
Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + ++HV MTG A  E+EG  D 
Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFDP 290


>gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
 gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
          Length = 275

 Score =  328 bits (841), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 147/281 (52%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+  +    FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDGS+ V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+ D   IP      K+++      PV          +SMGNPH +  V DD+    + 
Sbjct: 121 VPVTDPSNIPFKAK--KVEKTYLLQTPVQTFLCG---AISMGNPHCVIEV-DDIDTVAVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  FS+GVN+   ++ +   + LR +ERG G T ACG+ ACA+        K
Sbjct: 175 EIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDK 234

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +R V V + GG L I+W  +   ++MTG A+  ++G++ +
Sbjct: 235 LSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275


>gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 278

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFINEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+         +   +   N         + MG PH I FV DDL  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPKSDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDLEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               T R  +V +  G L IEW ++  VFMTG A++ + G+ 
Sbjct: 235 LNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGEY 276


>gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
 gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
          Length = 277

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           Q+  + F KM G+GN  +V+D R    N++     A+        FDQ+ +I      + 
Sbjct: 5   QTPGLPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAG 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +   N DGS   +CGN  RC+ RFL     R S    T RG L AK+  +G  SV+M
Sbjct: 62  DAQLTFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  +PLAR  D +                +P    MGNPH  FFV+ D+   DL
Sbjct: 122 GHPQLKWDEVPLAREMDTLHL----------PIEGDPVAAGMGNPHCTFFVK-DVEAVDL 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           +  G      P+F E  N+ +A++     + +R WERGVG+T A GS++CA+ VA+    
Sbjct: 171 SDIGPRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARRG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            T RAV + + GG L I+W D+  V+MTG     + G   
Sbjct: 231 LTGRAVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTFT 269


>gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 318

 Score =  328 bits (841), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 151/294 (51%), Positives = 200/294 (68%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + ++   FAKM G+GN+I+V DMRG  D IT +A   L++D  T FDQIM IHD + A  
Sbjct: 18  VMATRAAFAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGT 77

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D +I IINCDG++ Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDM
Sbjct: 78  DNYIAIINCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDM 137

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  DW+ IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L
Sbjct: 138 GKPRFDWQDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYEL 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG LL  HP+F E  N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++    
Sbjct: 198 EKFGPLLEHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTR 257

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
           +T R V+V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +  +
Sbjct: 258 RTGRTVTVNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSRDAQSHK 311


>gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894]
          Length = 301

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 151/298 (50%), Positives = 198/298 (66%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +    +  
Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSRDGTQEAG 299


>gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
 gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
          Length = 282

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 137/281 (48%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D      +   + A+           D ++LI        DA +
Sbjct: 1   MKFIKMHGAGNDYVYVDGFQQDVHRPEELAVRISDRHFGVGSDGLILILPSD--CADARM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDG------SI 116
           R+ N DGSE Q CGNG+RCV ++L  +   +    T ET+ G+L      D        +
Sbjct: 59  RMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG+P L    IP+         +   I   N  F      VSMGNPH + +V DD+ 
Sbjct: 119 TVNMGQPRLQRGQIPMTGPQQDQALE-VEIRVKNRTFT--ASCVSMGNPHCVVYV-DDVE 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +D+A +G LL  HP+F E +N+    + S   +  RTWERG G T ACG+ A A  VA 
Sbjct: 175 QFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTVAG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               +T R +   + GG L +E+ D+  V MTG A++ + G
Sbjct: 235 FLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275


>gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307]
 gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307]
          Length = 357

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R      +  D    L         D ++L    Q    D  ++
Sbjct: 19  FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I+N DGSE + CGNG+RC  RFL           +  ET  G+++ +      ++VDMGE
Sbjct: 78  ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137

Query: 123 PILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P L+   IP   +    +      +  ++         V MGNPHA+  V DDL   D  
Sbjct: 138 PFLEPASIPTNLAAGTPLPDGELQVAGISLQV----AAVGMGNPHAVVQV-DDLESLDFD 192

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L +HP F    N+   +V + + L +R WERG G T ACG+ ACA+VVA+     
Sbjct: 193 RLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRGA 252

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             R  +V++ GG L I+W   NH+ M G A   +EG L
Sbjct: 253 CARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVL 290


>gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R]
          Length = 272

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R         AI   +       D ++LI     A  D
Sbjct: 5   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
             +RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G     
Sbjct: 63  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+   I     F  +                    VSMGNPH + FV DD+
Sbjct: 123 VTVDMGVP-LETGTIDFDGEFPFL-----------------STQVSMGNPHLVTFV-DDI 163

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 164 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 223

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 224 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 271


>gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
 gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
          Length = 277

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 139/285 (48%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KMEG+GN  + +D       +  + I  +S        D +++I        D 
Sbjct: 1   MRLHFTKMEGLGNDYIYVDGINQDVCMDKEFIKKISDRHFGIGSDGMIVILPSDK--YDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE + CGNG+RC  +F+       +     ET  G+ + +   DG      
Sbjct: 59  KMRMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGA 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+PIL    IP   + + M      I      +  N   +SMGNPH + FV DDL 
Sbjct: 119 KVDMGKPILTCSDIPCNYNQETMIDQTIVIDD----YKYNLTSISMGNPHTVTFV-DDLE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G     H MF EGVN     V +   + +R WERG G T ACG+ ACA++ AS
Sbjct: 174 TLDLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + T   V+V++LGG L IE+  N+ + M+G A   +EG +++
Sbjct: 234 YLNNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277


>gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 304

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 150/297 (50%), Positives = 197/297 (66%), Gaps = 5/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 5   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 65  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++   + 
Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREA 301


>gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
 gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
          Length = 288

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/285 (47%), Positives = 171/285 (60%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + V F+KM GIGN+I+V D+RG  D +T +A  AL  D +T FDQ+M IHD  D + DA 
Sbjct: 3   TPVSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDAT 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           IRI N DGS   +CGNG RCVV +L  R     F F      L AK   DG ISV+MG P
Sbjct: 63  IRIYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGVP 122

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPL+  F         +GP+    L  P V ++GNPH +FF E+D   Y L  F
Sbjct: 123 RFDWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDKF 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G +L  H +F +  N+SIA+VTS  ++ LRTWERG GLT ACGSAACA+VV +     T 
Sbjct: 183 GPMLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELTE 242

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           R V+V + GG L IEW D+N + MTG A  E++G  D  TG W +
Sbjct: 243 RHVTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGWER 287


>gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
 gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
          Length = 284

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 130/285 (45%), Gaps = 7/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      ++T   +  L+        DQI+++   +    D 
Sbjct: 1   MKIKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLADRHFGIGADQILVVEPAEAGEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+ ++   ++K    +T++G++  +   DG + V M
Sbjct: 61  KYRIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVSM 120

Query: 121 GEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHY 178
           G P  +   +P   +     +   F    V +      F V SMGNPH +  V DD+   
Sbjct: 121 GTPSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIESA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  +  HP F   VN+   +  +    ++R WERG G T ACG+  CA+   S  
Sbjct: 180 PVKELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSIE 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
           L   +  +     GG L + W      V + G A   ++ ++++ 
Sbjct: 240 LGVLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284


>gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
 gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
          Length = 276

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  ++ID       +    I  ++        DQ++L+      S D   
Sbjct: 3   VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGNG RC  RF+  R     +    E    ++      +  + VDMG 
Sbjct: 63  RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHDVEVDMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IPL R  + ++ D    G    +       VSMGNPHAI  V D + +  L  
Sbjct: 123 PNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRV-DAVDNGSLER 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F EG N     +   +++ LR +ERGVG T ACGS ACA+VV    +   
Sbjct: 177 LGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V+V++ GG L I W  +N  V MTG     +EG + +
Sbjct: 237 DDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276


>gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
 gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
          Length = 284

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM G+GNKI+V DMR    NIT  A+ AL+ +  THFDQIM IH       D  I I
Sbjct: 4   PFSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS+ ++CGNG RCV+ +LT+    +SF  ET  GI+  K   +G ISV+MG P  D
Sbjct: 64  WNADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFD 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P+A      +      GP     L++  +VS GN HAIFFVE ++ H  L  +G  
Sbjct: 124 IKNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA VTS  SL LRTWERG GLT ACG+AACAS VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           +V +LGG L I + +++H+ MTG  + E+ G L   TG + K +
Sbjct: 239 NVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKKDS 282


>gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
 gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
          Length = 278

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D ++L+ +   A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    +   +   N         + MG PH I FV DD+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               T R  +V +  G L IEW ++  VFMTG A++ + G+ 
Sbjct: 235 LNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGEY 276


>gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
 gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
          Length = 275

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/278 (35%), Positives = 139/278 (50%), Gaps = 14/278 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I   ++ AS DA
Sbjct: 1   MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L  +  + +    T RG L AK+  +G  SV+MG 
Sbjct: 61  HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+   D ++                P    MGNPH  FFVE D     L  
Sbjct: 121 PQLLWDEIPLSEEMDTLEL----------PIEGAPTATGMGNPHCTFFVE-DAELIPLEE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ IA V   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R V + + GG L I+W ++  V+MTG      +G   
Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGSFT 266


>gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A]
          Length = 271

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 29/285 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R    +    AI           D ++LI     A  D
Sbjct: 2   TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P    ++                       +      VSMGNPH + F+ DD+
Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           +       R   V M GG + IEW +   H+ MTG A K ++G++
Sbjct: 221 AFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3]
          Length = 297

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/295 (50%), Positives = 198/295 (67%), Gaps = 5/295 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    
Sbjct: 1   MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDM
Sbjct: 61  DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDL
Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    
Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240

Query: 241 KTNRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           +T R V++ +        L IEW + ++HV MTG  + EW G+LD  TG W +  
Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSRDA 295


>gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H]
 gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H]
          Length = 257

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/276 (36%), Positives = 139/276 (50%), Gaps = 22/276 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID R     + +  I  L         DQ++L+     A  D 
Sbjct: 1   MTLSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +R  N DGSE  +CGN  RCV +F+       + T +T  G+L   ++ D   +VDMG 
Sbjct: 61  HVRFFNPDGSEAGACGNASRCVAKFVGG-----APTLQTAAGLLPTAQDGD-LFTVDMGT 114

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ +PL+R+ D +           HL L +    SMGNPHA  F       +   +
Sbjct: 115 PRLDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLFG----DAFRAEA 159

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L + P+F E  N+  A++ S   + LR WERG GLT ACGS ACA+VV +     T
Sbjct: 160 LGPGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLT 219

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            R  +V M GG L I W ++ HVFMTG A   + G 
Sbjct: 220 ERTCTVTMDGGDLRITWREDGHVFMTGPAVTVFHGT 255


>gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
 gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
          Length = 298

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 132/289 (45%), Gaps = 14/289 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +Q   +DF K  G+GN  +++D R          DAI     +     D ++        
Sbjct: 7   LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ- 65

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RF+         +S+   T+ G ++ +   DG 
Sbjct: 66  GCDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           ++VDMG P L    +P     +  D        V          VSMGNPH + F E D 
Sbjct: 126 VAVDMGPPTLKGAEVPTKLPVNA-DGAVVKQPLVVDGKTWLVTCVSMGNPHCVTFGEQDA 184

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +    L   G L   H +F    N    +V S   L +R WERG G T ACG+ A
Sbjct: 185 KGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGA 244

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           CA VVA+    +  R   V + GG L IEW + NNHV+MTG AK  + G
Sbjct: 245 CAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293


>gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 278

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D  
Sbjct: 1   MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG P
Sbjct: 61  VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LDW+ +PLAR+ D +                +P   SMGNPHA FF++D L    + + 
Sbjct: 121 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +       
Sbjct: 170 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 229

Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282
           R  +V M GG L + W       +  HV MTG A   + G  D +
Sbjct: 230 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 274


>gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 278

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++  G    D+  + A            D ++L+     A+ D  
Sbjct: 1   MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPS--AAADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---SISV 118
           +R+ N DGSE + CGN +RCV  +   R  + +     ET+ G++  +   DG   ++ V
Sbjct: 59  MRVFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+   IP+      +  +    G  + +       VSMGNPH + F   DL   
Sbjct: 119 DMGRPRLERAEIPMRGPAGPVVGEVLDAGERSFMVT----AVSMGNPHCVVFGA-DLDDA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
               +G LL  HP F    N+    V S   + +R WERGVG T ACG+ ACA  VA   
Sbjct: 174 GFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +T R V V++ GG LLIEW D+   V+M+G A++ ++GK
Sbjct: 234 TGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274


>gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652]
 gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652]
          Length = 301

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/293 (51%), Positives = 198/293 (67%), Gaps = 5/293 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +  
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDA 294


>gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 279

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/286 (36%), Positives = 141/286 (49%), Gaps = 18/286 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D 
Sbjct: 1   MMTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG 
Sbjct: 61  LVRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGR 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ +PLAR+ D +                +P   SMGNPHA FF++D L    + +
Sbjct: 121 PALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA 170

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +      
Sbjct: 171 -GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLV 229

Query: 243 NRAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282
            R  +V M GG L + W       +  HV MTG A   + G  D +
Sbjct: 230 ERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 275


>gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166]
          Length = 276

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +VID+   H +I                FDQ++++   Q+  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I VDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +       G    L       VSMGNPHA+  V D +    +
Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAVSMGNPHAVLRV-DSVERAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 277

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         S+    +S        D +++I+    A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  +
Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYR----MTCVSMGNPHAVVFIDQDVKEF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA   
Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
              T   V+VK+LGG L I+W  + N V+MTG A+  ++G+
Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275


>gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 278

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 130/278 (46%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM  +GN  ++ID    + ++ S+ I  L+       FDQ++L+       +D   
Sbjct: 1   MRFSKMCSLGNDFVIIDAVTQNVHLRSEFICRLANRHTGIGFDQLLLLEPPNSPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+ RF+       +K+    T    +         I V+MGE
Sbjct: 61  RIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + IP      K  +  + +       L     VSMGNPH I  VE  L    +  
Sbjct: 121 PDFFPQTIPFRS---KTIKKIYELDVAEQKLLCGI--VSMGNPHCIIQVE-KLDSDQIKL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP F EG N+   ++   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 IGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V+  GG L I W    H ++MTG A   ++G +
Sbjct: 235 DEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDGVI 272


>gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays]
 gi|194688384|gb|ACF78276.1| unknown [Zea mays]
 gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays]
 gi|219888355|gb|ACL54552.1| unknown [Zea mays]
          Length = 352

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 13/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 68  LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVND-ADYT 126

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF   L +     SFT  T  G ++ +   DG + VDM
Sbjct: 127 MRIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDM 186

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           GEPIL    IP      K ++              +   VSMGNPH + F  ++     +
Sbjct: 187 GEPILSGADIPTKLVATK-NKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQI 245

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA
Sbjct: 246 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 305

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 306 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350


>gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
 gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
          Length = 269

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/275 (38%), Positives = 157/275 (57%), Gaps = 7/275 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM G GN   + D R      T++ I  ++ D     DQ++ +   +DA+ D F+R
Sbjct: 1   MKLWKMNGAGNAFAIFDARSTAFTPTTEQIRKIAADLK--ADQVIAME--RDATKDVFMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGSEV +CGN  RCV   +     +   T +T   +L A    +G I+VDMG P +
Sbjct: 57  IWNSDGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQM 116

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPL+   D    D   IGP++   L  P VVSMGNPHA+FFV+ D+  YD+ + G 
Sbjct: 117 GWEDIPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVK-DVAAYDIPAIGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F +G N+  A+V   E++ LR WER  GLT ACG+ ACA++V +     T R 
Sbjct: 175 LVEWHPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRK 234

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             + + GG L I+W + ++HV+MTG  + E+E ++
Sbjct: 235 ARMILDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269


>gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
 gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
          Length = 323

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 18/289 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++ID R         N     +  +         D ++L    + A
Sbjct: 1   MLQFSKYQGLGNDFVLIDGREGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             D  ++I N DGS  + CGNG+RC+ RFL      +  + +  ET+ GI+      DG 
Sbjct: 60  DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I VDMG P LD + IP   +     + +   H+G  +     N   V MGNPH I  VE 
Sbjct: 120 ICVDMGSPFLDPESIPTTLTIGSAGLPQGECHLGGTS----LNVAAVGMGNPHVIVPVE- 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL       +G +L KH  F    N+   ++ S   L++R WERG G T ACG+ ACAS+
Sbjct: 175 DLESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACASL 234

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VA+  L  ++    V + GG L I W      VFMTG A+  ++G L  
Sbjct: 235 VAACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVLTP 283


>gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
 gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
          Length = 271

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 29/285 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R    +    AI           D ++LI     A  D
Sbjct: 2   TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P    ++                       +      VSMGNPH + F+ DD+
Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           +       R   V M GG + +EW +   H+ MTG A K ++G++
Sbjct: 221 AFINGLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265


>gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419]
 gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419]
          Length = 292

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 150/283 (53%), Positives = 189/283 (66%), Gaps = 1/283 (0%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GNKILV+DMRG  D +T  A   L+ D  T FDQIM IHD + A  DA+I I+N D
Sbjct: 1   MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS  Q+CGNG RCVV+ L +   +K+F F T+ G+L AKE+ DGSISVDMG+P   W  I
Sbjct: 61  GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA  F    R    IGP+    L +P VVSMGNPHAIF+VE+D+  YDL  FG LL  H
Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+     +T RAV+V +
Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240

Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
            GG L IEW + ++HV MTG A+ EW G LD  TG + +   +
Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTGIFERNEPE 283


>gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
 gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
          Length = 372

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 137/285 (48%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++I+ R    +          +  +         D I+L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +S++ ET  G+++     DG 
Sbjct: 61  G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P+L    +P   +  +    +  +    +  L     V MGNPH +  V  DL
Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGEL--TINGDLLKVAAVGMGNPHVVVPVP-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L   P F    N+   +V   ++LD+R WERG G T ACG+ ACA++VA
Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L  +     V + GG L I W D    VFMTG A+  ++G +
Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDGVV 281


>gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
 gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
          Length = 275

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 145/279 (51%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+G+GN  +VID       ++  AI  L+       FDQ++L+    D  +D   
Sbjct: 3   IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF  L    +++     T +G +  K  +DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP     +    ++ +I  V    +    VVSMGNPH +  V DD+    + +
Sbjct: 123 PIFDPHKIPFVAKKE----EKTYILRVQEHTVICG-VVSMGNPHCVVLV-DDIDSAPVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F   VN+S   + S +   LR WERGVG T ACG+ ACA+ V      K 
Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               ++++ GG L   W     V MTG A+  ++G++ I
Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275


>gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
 gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
          Length = 302

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 29/297 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            ++F KM G  N  L ID       N T  ++           D I+LI   + A  D  
Sbjct: 11  KINFTKMHGCKNDYLYIDCTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSKAA--DFR 68

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI--------RGIL------- 106
           +RI N DGSE + CGNG+RCV +F+       ++    ET          GI+       
Sbjct: 69  MRIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGIIPENRIKV 128

Query: 107 ---VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
                +     + +VDMG PI+    IP+  + ++   +  +I   +  F      VSMG
Sbjct: 129 LQLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKDWYFT----CVSMG 184

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+ FV DD    DL   G     + +F    N    +V S   L++R WERG G T 
Sbjct: 185 NPHAVTFV-DDTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGSGETL 243

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
           ACG+ ACAS  A+   +     V+V +LGG L+I++     H+FMTG  +  + G +
Sbjct: 244 ACGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGSI 300


>gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
          Length = 281

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVAEQP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V     + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
 gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
          Length = 282

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     ++   + AL+       FDQ+ +I        DA +
Sbjct: 12  LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPA--PEADAHL 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R +       +    T RG+L+A++  DG   V+MG+P 
Sbjct: 70  TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  +PLA + D ++                P    MGNPH  FFV  D     L +FG
Sbjct: 130 TLWSEVPLAEAMDTLEL----------PIEGTPTATGMGNPHCTFFVA-DAEAIPLDTFG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              + + GG L I+W ++  V+MTG     +EG+L  +
Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRLTPQ 275


>gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 281

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    N  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFIAEQP----EALYTLELANDQNINIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
 gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
          Length = 323

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 15/292 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S + F+K +G+GN  ++ID R   + +     A+     +     D ++          
Sbjct: 34  ASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPP-VGDT 92

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           D  +RI N DGSE + CGNG+RC+ +F+    +   + +   T+ G++  +   DG + V
Sbjct: 93  DLTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVRV 152

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----- 173
           DMGEPIL+   +P   +             +          VSMGNPHA+ +  D     
Sbjct: 153 DMGEPILEGAKVPTTLA-PTQGSTVVQQDLIVDGKTYKVSCVSMGNPHAVIYSCDGDTIK 211

Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D    DLA  G    ++ +F    N     V +   + +  WERG G T ACG+ ACA 
Sbjct: 212 IDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGACAL 271

Query: 233 VVASGCLHKTNRA--VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           VVA     + +R     V + GG L IEW+ ++NH++MTG A+  + G L +
Sbjct: 272 VVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323


>gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299]
 gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299]
          Length = 331

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 16/290 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDF--QDASVDA 62
            F K +G+GN  +++D R   +  ++S+    L         D ++            D 
Sbjct: 43  KFYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDY 102

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            +R+ N DG+E + CGNG+RC+  F+        K++   T+ G++  +   DG +SVDM
Sbjct: 103 SMRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDM 162

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------- 173
           GEP LD   +P      +          V+         VSMGNPH + F ++       
Sbjct: 163 GEPTLDPPKVPCTFEATQDGAAVRAKMEVDGE-TWLVTAVSMGNPHCVTFGKEGECDEEG 221

Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +  + L+ +G +  KHP F    N     V +   + +  WERG G T ACG+ ACA+
Sbjct: 222 IKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTGACAT 281

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VVA+    +T R  +V++ GG L IEW + +N V MTG A+  ++G + +
Sbjct: 282 VVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331


>gi|238009464|gb|ACR35767.1| unknown [Zea mays]
          Length = 350

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 69  LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 127

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF+           FT  T  G +V +   DG + VDM
Sbjct: 128 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 187

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHY 178
           GEPIL    IP      K ++              +   VSMGNPH + F  ++  +   
Sbjct: 188 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVDDL 246

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA+  
Sbjct: 247 KLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVL 306

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 307 EGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348


>gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
 gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
          Length = 277

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         S+    +S        D +++I+    A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       + S + ET+ GI    L  ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  +
Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYR----MTCVSMGNPHAVVFIDQDVKEF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA   
Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
              T   V+VK+LGG L I+W  + N V+MTG A+  ++G+
Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275


>gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
 gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
          Length = 303

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 131/287 (45%), Gaps = 14/287 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D      ++T +   AL         DQI+L+        D   R
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     E   GILV  +  D  ++VDMG  
Sbjct: 70  IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDMGST 129

Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             +   +P          +  D +        P           V++ NPHA+  V DD+
Sbjct: 130 RFEPSALPFDTAGLASRVQGQDTLWELEL-DAPAGLPRTVALSAVAISNPHAVQVV-DDV 187

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A  G L+  HP F   VN    ++    ++ LR +ERG G T ACG+ ACA+V A
Sbjct: 188 DTAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACGTGACAAVAA 247

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                  +  V V+  GG L + W+    + MTG A+  + G++DI 
Sbjct: 248 GIRRGLLDSPVRVQARGGVLTVAWN-GEQLRMTGPAESVFTGQVDID 293


>gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
 gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
          Length = 318

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQD 57
           M S+  + F+K +G+GN  +++D R   + +     A+     +     D ++       
Sbjct: 26  MASAKPLTFSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPP-V 84

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS 115
              D  +RI N DGSE + CGNG+RC+ +F++       + +   T+ G++  +   DG 
Sbjct: 85  GDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQ 144

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
           + VDMG PIL+   +P   +             V          VSMGNPHA+ +  D  
Sbjct: 145 VRVDMGTPILEGPKVPTTLA-PTQGSTVVQQDLVVEGKTYKVTCVSMGNPHAVIYSCDGE 203

Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
               D    +LA+ G    ++ +F    N     V S   + +  WERG G T ACG+ A
Sbjct: 204 PIKIDDLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGA 263

Query: 230 CASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CA VVA     + +R     V + GG L IEW   +NH++MTG A+  + G+L
Sbjct: 264 CALVVAGILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316


>gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
 gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
          Length = 276

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++    +           FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G +  L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQLVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
 gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
          Length = 282

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D      +   +   A  +       D ++LI     A  D
Sbjct: 2   TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGS 115
             +RI N DGSE + CGN  RC+ ++L       +     +T+ GI    L   + +  S
Sbjct: 60  FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNS 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  +       +    M      +    ++       VSMGNPH + FV +D+
Sbjct: 120 VTVDMGIPADEPADYD-GKGAKPMKEQPIEVDGERYV----GTTVSMGNPHLVIFV-NDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 EAIDLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +    +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 234 AFLTGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
 gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
          Length = 276

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++    +           FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G    L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
 gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
          Length = 394

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 94/314 (29%), Positives = 143/314 (45%), Gaps = 31/314 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD--------------------NITSDAINALSTDD-N 43
           M+ + K +G+GN  L++D RG  D                     +T + I  L      
Sbjct: 1   MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60

Query: 44  THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFE 100
              D +++    ++   +  +RI N DGSE + CGNG+RC+ RFL      +  + +  E
Sbjct: 61  IGADGLIVAAPPREGG-ELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVE 119

Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           T+ G +V +   DGS+ VDMG+P L  + +P           +  +      F       
Sbjct: 120 TLAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESF--QVGAA 177

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
            MGNPH +  V  DL   DL  FG  L  HP F    N+   +V +   L +R WERG G
Sbjct: 178 GMGNPHVVIPVP-DLEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAG 236

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            T ACG+ ACA++V    L    R+  + + GG L I W   ++HV+MTG A+  ++  +
Sbjct: 237 PTLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAVI 296

Query: 280 DIKTGKWIKKNEDD 293
                 W  +  DD
Sbjct: 297 AP--SLWDPEGVDD 308


>gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
 gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
          Length = 278

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 99/278 (35%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G+GN  +V+D R     ++     A+        +DQ + I   ++    A
Sbjct: 2   SGLAFTKMHGLGNDFVVVDGRVHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT-A 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++ I N DG+E Q+CGNG RCV   L     +     ETI G L+  +  DG ++VDMG 
Sbjct: 61  YMAIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             LDW+ IPLA      D D   +             V+MGNPHA+FFV  D    DL++
Sbjct: 121 ANLDWRAIPLAS-----DTDTLSVTVPEAGTFGPATAVNMGNPHAVFFVP-DAEAVDLST 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +    +F E  N+    V + + L +R WER  G+T ACGS ACA++VA+     T
Sbjct: 175 VGPRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVRRGLT 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R  +V + GG L I W  + HV MTG     + G LD
Sbjct: 235 ERRATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272


>gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22]
 gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22]
          Length = 271

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 29/285 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D  R    +    AI           D ++LI     A  D
Sbjct: 2   TVRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K   +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVST 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P    ++                       +      VSMGNPH + F+ DD+
Sbjct: 120 VTVDMGSPQETGEI------------------DWGKKYPFQSTKVSMGNPHLVTFI-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           +       R   V M GG + IEW +   H+ MTG A K ++G++
Sbjct: 221 AFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 305

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 141/303 (46%), Gaps = 25/303 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L+        DQI+ +       VD 
Sbjct: 1   MRIRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLADRHFGVGADQILSVRAAPGPGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC VR++  R    ++    +   G++   E  DG ++VDM
Sbjct: 61  EYVIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVDM 120

Query: 121 GEPILDWKLIPLARS----------------FDKMDRDRFHIGPVNHLF---LRNPFVVS 161
           G P+ +   IP   +                +  +D  R     V       + N  V+S
Sbjct: 121 GAPVFELPRIPFDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVNVAVLS 180

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+  V  D+    +A  G L+  HP F + VN    ++    ++ LR +ERGVG 
Sbjct: 181 MGNPHAVQLVA-DVEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYERGVGE 239

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279
           T ACG+ ACA+VVA   L   +  V V   GG L IEW     + VFMTG A   +EG+ 
Sbjct: 240 TLACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTVFEGET 299

Query: 280 DIK 282
           +I 
Sbjct: 300 EIP 302


>gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
 gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
          Length = 276

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +VID+   H +I                FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+ + IP       +D      G    L       +SMGNPHA+  VE+ +    +
Sbjct: 121 GPPRLEPREIPFQAENAALDYQVEVDGCEVEL-----AALSMGNPHAVLRVEN-VESAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W   +  V MTG A + +EG++ +
Sbjct: 235 WMDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276


>gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
 gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
          Length = 281

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 147/282 (52%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFIAEQP----EALYTLELANDRNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             + +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays]
 gi|194704094|gb|ACF86131.1| unknown [Zea mays]
 gi|223948299|gb|ACN28233.1| unknown [Zea mays]
          Length = 353

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 131/285 (45%), Gaps = 13/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 69  LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 127

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF+           FT  T  G +V +   DG + VDM
Sbjct: 128 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 187

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           GEPIL    IP      K ++              +   VSMGNPH + F  ++     +
Sbjct: 188 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVLQV 246

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA
Sbjct: 247 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 306

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 307 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351


>gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 287

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 138/284 (48%), Gaps = 10/284 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +  ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  V
Sbjct: 10  KPMLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEV 69

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SV
Sbjct: 70  DFRYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSV 129

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P      IP       ++      G      L +   VSMGNPHA+  V DD+   
Sbjct: 130 DMGPPRFIPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVQTA 183

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+  
Sbjct: 184 PVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAIS 243

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 244 QGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287


>gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
          Length = 283

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 141/289 (48%), Gaps = 22/289 (7%)

Query: 3   SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           + ++ F KM G GN  + +D      G  + ++ +     +       D ++LI   +  
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE---WSALHTGIGSDGLVLIG--RSG 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
             D  +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L  ++N+
Sbjct: 57  KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNK 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +++VDMG P  +       +    M      I  V +        VSMGNPH + FV 
Sbjct: 117 VDTVTVDMGIPACEPTCYD-GKEGKPMKEHPIEIDGVRY----TGTTVSMGNPHLVIFV- 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           +D+   DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA+
Sbjct: 171 NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACAT 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            VA+    ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 231 AVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct]
          Length = 277

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++    +           FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G    L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193]
 gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193]
          Length = 292

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/275 (34%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D R     IT      ++       FDQ+ LI        DA + 
Sbjct: 26  PFMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALIE---QGKGDAHLT 82

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RC+ R L     +      T RG L A +  +G  SV+MG P L
Sbjct: 83  FFNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQL 142

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPL    D ++                P    MGNPH  FFVE D     L  FG 
Sbjct: 143 DWRDIPLREETDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAGLIPLTDFGP 191

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
               HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     T R 
Sbjct: 192 RYEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRR 251

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           V + + GG L I+W D+  V+MTG     + G   
Sbjct: 252 VQIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTFT 285


>gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
 gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
          Length = 280

 Score =  325 bits (833), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 15/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G+GN  ++ID R     + +     +        +DQ+++I   + A  D  +
Sbjct: 11  VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIGDRHFGVGYDQLVVITKSKKA--DVEV 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV + +      +  T +T  G+LVA++ ++  ISV+MG P 
Sbjct: 69  VFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMGHPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW +IPL    +K+D     I         +P  V +GNPH + FV DD+   DL S+G
Sbjct: 129 LDWDVIPLK---EKVDLIELPIEG-------SPGAVGIGNPHCV-FVVDDVNSVDLISWG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           + +  H +F +  N+   ++   +++  RT+ERG G T ACGS ACA  V +     T R
Sbjct: 178 SKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGLTER 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            VSV + GG L I W  +  ++MTG     ++G L   
Sbjct: 238 NVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVLSPD 274


>gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
 gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
          Length = 283

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 140/289 (48%), Gaps = 22/289 (7%)

Query: 3   SSMVDFAKMEGIGNKILVID----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           + ++ F KM G GN  + +D      G  + ++ +     +       D ++LI   +  
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKE---WSALHTGIGSDGLVLIG--RSG 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENR 112
             D  +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L  + N+
Sbjct: 57  KADFSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNK 116

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +++VDMG P  +       +    M      I  V +        VSMGNPH + FV 
Sbjct: 117 VDTVTVDMGIPACEPACYD-GKEGKPMKEHPIEIDGVRY----TGTTVSMGNPHLVIFV- 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           +D+   DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA+
Sbjct: 171 NDITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACAT 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            VA+    ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 231 AVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana)
           tropicalis]
          Length = 289

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----DASVDAFIR 65
           M+G GN  +V+D       +++     L+        DQI+ +         A +D    
Sbjct: 1   MQGAGNDFIVLDETQGRLGLSAAQYRFLADRHLGVGADQILSVRAPTPQAVAAGIDFEYV 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV+ CGNG RC  RF+  +    + S   +T  G++  +   DG +SVDMG P
Sbjct: 61  IHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDMGLP 120

Query: 124 ILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
               + +P   S        + ++    +  +      +  + SMGNPHA+  V DD+  
Sbjct: 121 RFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIAIASMGNPHAVLLV-DDVDT 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A++G L+  H  F   VN    ++     + LR +ERG G T ACG+ ACA+VV+  
Sbjct: 180 APVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACAAVVSGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
            L   +  V V   GG L I W     + VF+TG A   +EG++++ 
Sbjct: 240 RLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286


>gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2]
 gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
 gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1]
 gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
          Length = 276

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++    +           FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +  +    G    L       VSMGNPH +  VE+ +    +
Sbjct: 121 GPPRLAPAEIPFQAEREALSYEIEVNGQRVEL-----AAVSMGNPHGVLRVEN-VDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA     
Sbjct: 175 HSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
 gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
          Length = 282

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 18/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  +++          +N    +            D ++L+   + A  D
Sbjct: 1   MKFYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGS 115
             +RI N DGSE + CGNG+RC  +       + +     ET+ GI+V +    ++++  
Sbjct: 59  LKMRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSL 118

Query: 116 ISVDMGEPILDWKLIPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I V+MG P L  + IP+      D +   R  I     L   N   VSMGNPH + F++ 
Sbjct: 119 IRVNMGTPNLKPESIPILGFEGKDSVINQRIQINDKTFL---NVTCVSMGNPHCVIFMDY 175

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ ++ +      +     F +  N+  ARV S   ++LR WERGVG T ACG+ ACA+ 
Sbjct: 176 DIKNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATA 235

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           VA+     TN  V++ + GG L IE+ + N+VFMT  A   +EG ++I
Sbjct: 236 VAAKLNGFTNGNVNIHLPGGILHIEY-ETNNVFMTATATLVFEGIIEI 282


>gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
 gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
          Length = 366

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 92/300 (30%), Positives = 145/300 (48%), Gaps = 17/300 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT---SDAI---NALSTDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R      +    D                D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI+N DGSE + CGNG+RC+ R+L         + +  ET+ G++  +   D  
Sbjct: 60  EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L  + IP     +        +     +       V MGNPH +  V DDL
Sbjct: 120 LRVDMGPPFLTPEAIPTTVMPEDGLPQGVLLLEDEQI---RVASVGMGNPHVVVPV-DDL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  HP F    N+   +V S E L++R WERG G T ACG+ ACA++VA
Sbjct: 176 ASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL--DIKTGKWIKKNED 292
           +  L   +    V + GG L+IEW D +  V MTG A+  ++G +  ++ +G +  + +D
Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDGVMTPELMSGLFAVEPQD 295


>gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
 gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
          Length = 269

 Score =  324 bits (832), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 29/288 (10%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ +R         AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
             +RI N DGSE   CGN  RC+ ++L       +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVET 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG        IPL       D +          F      VSMGNPH + FV DD+
Sbjct: 120 VTVDMG--------IPLETGTIDFDGE----------FPFLSTQVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 RIVNLSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +T R V+V M GG L IEW +   H+ MTG A K ++G ++++
Sbjct: 221 AHLTGRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELR 268


>gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
 gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
          Length = 276

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  ++ID         SD I +LS       FDQ++++    D ++D   
Sbjct: 1   MRFSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG+RCV RF+       ++     T    ++        ISV+MGE
Sbjct: 61  RIYNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSEFISVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP    F      + ++  V + F     VVS+GNPH +  VE  +    +  
Sbjct: 121 PIFDPIKIP----FFSTQYQKMYVLFVPN-FTILCGVVSIGNPHCVILVEQ-VDLVPVTV 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L  H  F +  N+S  ++ S  ++ LR +ERG G T ACGSAACA+V         
Sbjct: 175 LGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQQGLL 234

Query: 243 NR--AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  +V V + GG L I W      ++M G A   ++G +++
Sbjct: 235 KKNISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276


>gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 278

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 142/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG  D +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R  +K   F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    + IP+         +   +   N         + MG PH I FV DDL  
Sbjct: 119 VNMGKPSFKREDIPMQGDPKSDAINTSIVVDGNE---YRITSLLMGVPHTILFV-DDLEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 R  SV +  G L IEW D+  VFMTG A++ + G+ 
Sbjct: 235 LNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGEY 276


>gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
 gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
          Length = 276

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +VID+   H +I                FDQ++++   Q+  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I VDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     + +       G    L        SMGNPHA+  V D +    +
Sbjct: 121 GPPRLVPAEIPFQAEREALSYSLEVDGQQVEL-----AAASMGNPHAVLRV-DSVERAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205]
          Length = 341

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 134/285 (47%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M  F+K +G+GN  L++D R   D      +T + +  L         D ++L     + 
Sbjct: 1   MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPP-NG 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DG+E + CGNG+RC+ RFL         +++  +T+ G +V +   DG+
Sbjct: 60  GGELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L    IP      +       +      F        MGNPH +  V D +
Sbjct: 120 IRVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERFA--VAAAGMGNPHVVVPV-DSV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL  FG+ L  HP F    N+    V S   L +R WERG G T ACG+ ACA++VA
Sbjct: 177 DEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              L  + R   + + GG L I W   N  VFM G A+  ++G +
Sbjct: 237 CHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281


>gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
 gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
          Length = 289

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 122/277 (44%), Positives = 171/277 (61%), Gaps = 4/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A++      +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAAR--VPYDQLMVLQPPRLDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DGSE  +CGNGMRCVVR +  +  + S TFET  G+L   +       +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VV+MGNPHA+F+V+ D+  YDL  FG L
Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + + GG L IEW + ++HV MTG A  E+EG+ + +
Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283


>gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
 gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
          Length = 293

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 170/276 (61%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--LPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   ++  TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWV-DDIEAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + +R V
Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L I W + +NHV MTG A  E+EG+ D 
Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFDP 281


>gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
 gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
          Length = 283

 Score =  324 bits (831), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 135/285 (47%), Gaps = 12/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM GIGN  + ++          + I  L +D +       LI        DA +R
Sbjct: 1   MRFTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDRHFGIGGDGLILITPSEVADARMR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVD 119
           + N DGSE + CGNG+RCV +++      K+++   ET  G+L  +   +      + V+
Sbjct: 61  MFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVRVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+PIL+ K IP     + +   +  I   +     +   VSMGNPH + FVE       
Sbjct: 121 MGQPILEGKKIPTIFDSNPVVNQKIEIAGQSF----DVTCVSMGNPHCVIFVEKATDEL- 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + +   F   VN+    V S   +  RTWERG G T ACG+ A A  VA    
Sbjct: 176 VLKIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGVLT 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R +   +LGG L +EW++ +N V+ TG A + + G+  +  
Sbjct: 236 GRTKRKILNHLLGGDLQLEWNEADNCVYKTGGATEVFTGEWMLPA 280


>gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
 gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
          Length = 276

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++                FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K+   ET  G++  +   DG + V+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+   +P       +     +   V    +     +SMGNPHA+  V D++    +
Sbjct: 121 GAPRLEPAQVPFQAEQAAL----TYRVDVEGQSVELA-ALSMGNPHAVLRV-DNVDSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 235 WMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
 gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
          Length = 281

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP      K      +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVAEEPKA----LYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
 gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
          Length = 276

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G+GN  +VID      ++T+  +  ++        DQ++L+      ++D 
Sbjct: 1   MRIAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    +     +T  GI+  +   DG I+VDM
Sbjct: 61  GYRIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP      K+D++  +              VSMGNPH +  V   +    +
Sbjct: 121 GVPRFAPHQIPF-----KVDQEADYYSLELDGQQVEIGAVSMGNPHCVLRVP-AVDTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+ V      
Sbjct: 175 AHWGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             +  V+V + GG L I W  +   V+M+G A+  ++G +++
Sbjct: 235 WLSGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276


>gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
 gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
          Length = 279

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/272 (36%), Positives = 135/272 (49%), Gaps = 15/272 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID RG     T     AL        FDQ+  I D   A  D  +
Sbjct: 10  LAFMKMHGLGNDFVVIDSRGRGAVTTPALARALGDRHRGVGFDQLAEIRDS--AEADFAL 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV  F+     + + T  T RG L A    DG +SV+MG P 
Sbjct: 68  DFWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQ 127

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D +                +P  V MGNPH +FFV  +    ++A  G
Sbjct: 128 LDWAEVPLARPADTLHL----------PISGDPVAVGMGNPHCVFFV-GNAETVNVADLG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L    P+F +  N+  A +T  + L +R WERG G+T ACGS ACA+ VA+     T R
Sbjct: 177 ALFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGR 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V++ + GG L I+W  +  V+MTG     ++
Sbjct: 237 KVTLDLDGGALEIDWRSDG-VWMTGPTAHVFD 267


>gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
 gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
          Length = 281

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D+        +  I  L+       FDQ++++      + D  
Sbjct: 1   MLEFTKMHGLGNDFMVVDLITQRAYFDTLTIQRLADRHFGIGFDQLLIVEPPDLPTADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  K   +G + V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +LIP        + D  +   +N+  L    VV+MGNPHA+  V  D+   ++A
Sbjct: 121 YPKFAPELIPFVTE----ETDPLYALELNNNQLLKIDVVNMGNPHAVTIVP-DVLTAEVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +  H  F E VN+   ++ + + + LR +ERG G T ACG+ ACA+ V+      
Sbjct: 176 SIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMRRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 236 LAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276


>gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 275

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  ++ D I+ L+       FDQ+++I    D  +D   
Sbjct: 3   IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+      +++     T +G +  K   DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PIL+   +P    F+    ++ +I  V    +    VVS+GNPH +  V DD+ +  + +
Sbjct: 123 PILEPAKVP----FEAQKEEKTYILRVEDHTVLCG-VVSIGNPHCVVLV-DDIDNAPVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F   VN+    + S +   LR WERGVG T ACG+ ACA+ V      K 
Sbjct: 177 LGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           N   ++++ GG L + W     V MTG A   ++G++ I
Sbjct: 237 NPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275


>gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
 gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
          Length = 287

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 142/285 (49%), Gaps = 15/285 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           Q   ++F K +G GN  +V+D       +  + A+           D +M++   + A  
Sbjct: 5   QGKTMEFTKWQGCGNDFVVVDFLDREPVDFAALAVRMCDRHFGIGADGLMVVLPSETA-- 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDG 114
           D  +R  N DG+E + CGNG+RC  R+L    R++++ FT ET+ GI+  +    + +  
Sbjct: 63  DIRMREFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDGKVT 122

Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           ++ VDMG P+L    IP+     +++      +    +        VSMGNPHA+ FV D
Sbjct: 123 AVEVDMGVPVLTGDDIPVRGFGTERVIAVPITVAGEEYK----MTCVSMGNPHAVIFV-D 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D  H+ LA  G     H +F   +N     V       +R WERG G+T ACG+  CA++
Sbjct: 178 DAEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATL 237

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            A       +RA  +++ GG + +EW ++ H+FMTG A+  + G 
Sbjct: 238 TAGVLTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGV 282


>gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056]
 gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058]
 gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059]
 gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
 gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
          Length = 281

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVAEEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
 gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
          Length = 281

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVAEEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
 gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 18/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +  S     +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SIS 117
            + N DGS+   CGNG+RCV ++      + + + +  T  GI  L      DG    + 
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVALVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL  + IP+  + +++  +  ++    +    +   VSMGNPHAI ++ DDL +
Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTY----HITAVSMGNPHAIVYM-DDLRN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  VAS 
Sbjct: 174 LDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233

Query: 238 CLHKTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
                +    V+VK+LGG L I W    N V+MTG A   ++G++ +
Sbjct: 234 LNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIFL 280


>gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
 gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
          Length = 323

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 138/283 (48%), Gaps = 12/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++FAK EG+GN  ++ID R      +T +    L   +     D ++          D  
Sbjct: 39  IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLCNRNFGVGGDGVIFALKAPQD-YDFT 97

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE + CGNG+RC  +FL       KS+   T+ G +V + N D +I+VDMGE
Sbjct: 98  MRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNPD-TITVDMGE 156

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHYDLA 181
           PILD   +P   + +           V+          VSMGNPHAI FV+D     D A
Sbjct: 157 PILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKISAVSMGNPHAIIFVDDLEKDIDFA 216

Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             G  L      F    N+   +V S   L ++ WERG G T ACG+  CA VVA+   +
Sbjct: 217 VDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVVAAIRAN 276

Query: 241 KTNRA----VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           K  R     V V + GG L IEW  +NN ++MTG A   ++G 
Sbjct: 277 KIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGT 319


>gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
 gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
          Length = 274

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 135/281 (48%), Gaps = 13/281 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            M  F KM G+GN  +V+D R    ++T   I AL         DQ + +        D 
Sbjct: 1   MMTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALCDRHTGIGCDQFVTLRPACAEGADV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+R  N DGSE  +CGN  RCV   +     R     +T  G+L A   R G ++VDMG 
Sbjct: 61  FVRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W  +PLA + D +                +P  VSMGNPHA FF+       D   
Sbjct: 121 PAQGWADVPLAEAMDTLHL----------PMAGDPAAVSMGNPHATFFLPAP-DGMDPCV 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F +  N+  A VTS  S+ LR WERG GLT ACGS ACA+VV +      
Sbjct: 170 AGPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGLV 229

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           +R  +V+M GG L I W  D+ HV MTG A   + G    +
Sbjct: 230 DRTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTFSPE 270


>gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
 gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
          Length = 280

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 16/280 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +++D R     IT      +        FDQ+ +I        DA
Sbjct: 10  TGLPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIE---QGQADA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ RFL +   + +    T RG L+A++  DG  S++MG+
Sbjct: 67  HLVFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQ 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ IPLA   + ++                P    MGNPH  FFV  D     L  
Sbjct: 127 PQLDWQEIPLAEDVNTLEL----------PIEGGPTATGMGNPHCTFFVV-DAEAIPLEE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 176 FGARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            R V + + GG + I+W D+  V+MTG       G L  +
Sbjct: 236 GREVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTLTPE 274


>gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 280

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 156/287 (54%), Gaps = 18/287 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++  KM G+GN  +V+         ++  AI   +       D ++ I   ++A  D  
Sbjct: 1   MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLCNRHFGIGADGLVYILPSKEA--DFM 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETI-RGI----LVAKENRDG 114
           +RIIN DGSE + CGN +RCV +++        +    T +TI  GI    +  K+ +  
Sbjct: 59  MRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDGKVD 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++ VDMGEPIL+   IP   + + + +    +      F      VSMGNPH + +V+D 
Sbjct: 119 TVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQFT----AVSMGNPHCVIYVDDA 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   +L  +G LL  HP+F + +N+  A V S + + +  WERG G T ACG+ ACA++V
Sbjct: 175 V-TMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACATLV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           AS   + T+R  ++ + GG L IEW++ +NHV+MTG A + ++G+L 
Sbjct: 234 ASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRLS 280


>gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
 gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
          Length = 281

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA
Sbjct: 10  TRLPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MG+
Sbjct: 67  HLTFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQ 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ IPLA   D ++                P    MGNPH  FFV  +     LA 
Sbjct: 127 PQLDWQDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFV-GNAEVIPLAE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R V + + GG L I+W ++  V+MTG      +G   
Sbjct: 236 GRKVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGYFT 272


>gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
 gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
          Length = 283

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 135/285 (47%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KMEGIGN  +  D       +  + I  +S        D +++I        D 
Sbjct: 7   MQLHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSD--QYDF 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE   CGNG+RC  +F+       +     ET  G+   +   DG      
Sbjct: 65  KMRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGA 124

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV  DL 
Sbjct: 125 KVNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVS-DLD 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A 
Sbjct: 180 TLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYAC 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              H T+  V+V++LGG L IE+  +  + M+G A   + G ++I
Sbjct: 240 YLNHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIEI 283


>gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54]
          Length = 297

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 131/287 (45%), Gaps = 14/287 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D       +T +   AL         DQI+L+        D   R
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQAIEMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDMG  
Sbjct: 64  IFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDMGST 123

Query: 124 ILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             D   +P             D + +    + P           V++ NPHA+  V D++
Sbjct: 124 RFDPAALPFDTAGLASRTEGQDTLWQLELDV-PAGLPRSVALSAVAISNPHAVQVV-DNV 181

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +A  G L+  HP F+  VN    ++    S+ LR  ERG G T ACG+ ACA+V A
Sbjct: 182 DTAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACGTGACAAVAA 241

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                  +  V V+  GG L I W+    + +TG A+  + G++DI 
Sbjct: 242 GIRRGLLDSPVRVQTRGGVLTIAWN-GEQLRLTGPAESVFTGQVDID 287


>gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
 gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
          Length = 270

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 29/290 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D            AI           D ++LI +   A  D
Sbjct: 2   TKKIKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +   T +T+ GI + K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVTA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P               ++    H       +      VSMGNPH + FV DD+
Sbjct: 120 VTVDMGSP---------------LETGEVHF---EDKYPFRSTRVSMGNPHLVTFV-DDI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  H +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TQINLPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
           +     T R   + M GG + IEW + + H+ MTG A K ++G+++   G
Sbjct: 221 AFINELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIEEIEG 270


>gi|194700330|gb|ACF84249.1| unknown [Zea mays]
          Length = 308

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 131/285 (45%), Gaps = 13/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 24  LHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-GADYT 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF+           FT  T  G +V +   DG + VDM
Sbjct: 83  MRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDM 142

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           GEPIL    IP      K ++              +   VSMGNPH + F  ++     +
Sbjct: 143 GEPILSGLDIPTKLLATK-NKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELKVLQV 201

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VVA
Sbjct: 202 DDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVA 261

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 262 AVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306


>gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900]
          Length = 281

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
 gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
          Length = 388

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 143/287 (49%), Gaps = 14/287 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQ 56
            +++ F+K +G+GN  L++D R   D      +  + +  +         D ++L    +
Sbjct: 6   GAVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALPPE 65

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRD 113
               +  +RI N DGSE + CGNG+RC+ RFL         +++  ET+ G +V +   D
Sbjct: 66  GDG-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLAD 124

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G + VDMGEP L  + +P   +       +  +      F        MGNPH +    +
Sbjct: 125 GMVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAAAA--GMGNPHLVIP-VE 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           ++   DL  FG LL +HP F    N+   +    + L +R WERG G T ACG+ ACA++
Sbjct: 182 EVEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATL 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           VA   L  + R+  + + GG L I+W   +NH+FMTG A+  ++G L
Sbjct: 242 VACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288


>gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
 gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
          Length = 290

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 141/295 (47%), Gaps = 17/295 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +++ D      N    A+   + +     D + L+   + A+    +
Sbjct: 1   MRFTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAA--FRV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE + CGN +RC  ++L             E    I    L   +    S+ V
Sbjct: 59  RIFNPDGSEAELCGNLLRCAGKYLYEKGHTGETVIPVEMYDKIKVLRLAVTDGVVQSVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+  L+P+A    +   +         +       VSMGNPH + FV D+    
Sbjct: 119 DMGEPILESDLVPVAGKRRQAVNEEVTASGEKFV----MTAVSMGNPHCVIFV-DETAAV 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L ++G  L  HP F +  N+    V S +    R WERG G T ACGS ACA +VA   
Sbjct: 174 PLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAGVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL---DIKTGKWIKKN 290
             K NR  ++ + GG L IEW D+NHV+MTG A + + G+L   +    K+++K 
Sbjct: 234 SDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGELVTDEQFKNKYLRKG 288


>gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
 gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
          Length = 267

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R         AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +K  T +T  GI V K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P L+ + +                      F      VSMGNPH + FVE D+
Sbjct: 120 VTVDMGSP-LETEAVDFG-----------------DQFPFQSTRVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +       R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 221 AVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
 gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
          Length = 293

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 129/276 (46%), Positives = 171/276 (61%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW D +NHV MTG A+ E+EG+ D 
Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFDP 281


>gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E]
 gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 274

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 135/281 (48%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +     + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     +K     T  G ++     DG I V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P+ +   IP  A  F+K    R  I  V          VSMGNPH    V DD+   ++ 
Sbjct: 121 PVWEPAKIPFIANKFEKNYILRTDIQTV------LCGAVSMGNPHC-TLVVDDVETANVT 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+         
Sbjct: 174 ELGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 234 LENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274


>gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425]
 gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425]
          Length = 280

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 137/284 (48%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R     +     A++          D ++ +        D  
Sbjct: 3   LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPAT-GETDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISV 118
           +RI N DGSE + CGNG+RC+ RF              +   T+ G +  +   DG ++V
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTV 121

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG+P L    IP  L  + +K+      +G  +         VSMGNPH I FVE+ + 
Sbjct: 122 DMGQPRLLAGEIPTTLKPAAEKVIAQPLQVGGRSWSVT----CVSMGNPHCITFVEN-VA 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G     HP F + +N     V   + L +R WERG G+T ACG+ ACA++VA+
Sbjct: 177 AIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVAA 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
                +    +V++ GG L IEW      V MTG A++ ++G L
Sbjct: 237 VLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280


>gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20]
 gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20]
          Length = 282

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D      +   +   A  +       D ++LI     A  D
Sbjct: 2   TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI----LVAKENRDGS 115
             +RI N DGSE + CGN  RC+ ++L       +   T +T+ GI    L   + +  S
Sbjct: 60  FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNS 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  +       +    M      +    ++       VSMGNPH + FV +D+
Sbjct: 120 VTVDMGIPADEPADYD-GKGAKPMKEQPIEVDGERYV----GTTVSMGNPHLVIFV-NDI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 174 EAIGLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +    +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 234 AFLTGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7]
 gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7]
          Length = 277

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 134/285 (47%), Gaps = 15/285 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KMEGIGN  +  D       +  + I  +S        D +++I        D 
Sbjct: 1   MQLHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSD--QYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE   CGNG+RC  +F+       +     ET  G+   +   DG      
Sbjct: 59  KMRMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGA 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV  DL 
Sbjct: 119 KVNMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRLT----TISMGNPHTVTFVS-DLD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A 
Sbjct: 174 TLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYAC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              H T+  V+V++LGG L IE+  +  + M+G A   + G + I
Sbjct: 234 YLNHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIKI 277


>gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 304

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 149/284 (52%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++      N  +     +S        D ++LI   + A  D  +
Sbjct: 28  MKFTKMQGCGNDYVYVNCFEETINDPNGVAKKVSDRRFGIGSDGLILIKPSEIA--DFTM 85

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS+ + CGNG+RCV +++      ++ S   ET+ G+    L+    +   ++V
Sbjct: 86  HMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALIVDGGKVTEVTV 145

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP LD KLIP+A   +++      I             VS+GNPHA+ F+ED    +
Sbjct: 146 DMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG----VSVGNPHAVTFIEDT-NSF 200

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + ++G L  +HP+F E +N    ++   +++++R WERG   T ACG+ A  SV A+  
Sbjct: 201 PIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGSAETHACGTGATCSVYAAIL 260

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              T   V+V MLGG ++I +  + N +FMTG A   ++G++++
Sbjct: 261 NGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGEIEL 304


>gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7]
          Length = 276

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I         +      FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQATCYTVDVDGQSIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
 gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
          Length = 273

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/283 (36%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQD 57
           M+ +M V F KM G+GN  +V+D R     +     A       +    DQ++L+     
Sbjct: 1   MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLEPS-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            S D  +RI N DGSEV +CGN  R V       +       ET  G+L A    DG   
Sbjct: 59  GSADFRMRIFNHDGSEVGACGNATRAVA-----LLHGVEARIETAGGLLSAS-PSDGGAR 112

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P  DW  IPLA   D +        PV    L NP  V++GNPH IFFVED    
Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTLSM------PVGWEMLENPGAVNVGNPHVIFFVEDT-NA 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  + K P+F E VN+++A + S   + LR WERG GLT ACG+ ACA+ V + 
Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                +  V+V + GG L I W     + MTG A + + G  +
Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268


>gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
 gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
          Length = 261

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/267 (32%), Positives = 131/267 (49%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + + I  L+       FDQ++++    D  +D   RI N DGSEV  C
Sbjct: 1   MVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVAQC 60

Query: 78  GNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF  L     ++  +  T  G ++   N D ++ V+MGEP  D + +P    
Sbjct: 61  GNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVNEDETVCVNMGEPNFDPQAVP---- 116

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F     ++ +I       +    VVSMGNPH +  V DD+   ++A  G +L  H  F E
Sbjct: 117 FRATKAEKTYIFRAAEHTVLCG-VVSMGNPHCVMQV-DDVSVANVALLGPVLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
             N+   +V S E + LR +ERG G T ACGS ACA+V            V V++ GG L
Sbjct: 175 RANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELLGEEVHVELPGGSL 234

Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            I W    H ++MTG A   ++G + +
Sbjct: 235 HISWKGPGHPLYMTGPATHVYDGFIHL 261


>gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 269

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 26/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + I+          + A+           D ++LI        D  +
Sbjct: 1   MKFTKMQGTGNDYVYINCFEETVERPEELAVKVSDRHFGIGSDGLILICPS--GQADCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           ++ N DGSE + CGNG+RCV +F+     +++K F  ET  GI   K   +G     I+V
Sbjct: 59  KMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGGKAALITV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +    +P          +   +   ++ F+     +SMGNPHAI+++ D++   
Sbjct: 119 DMGIPEVTG-DVP----------EPIVVDGRSYEFIG----ISMGNPHAIYYM-DEIDDL 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     H  F E  N    +V     L +R WERG G T ACG+ A AS VAS  
Sbjct: 163 DLEAIGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASVL 222

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283
             +T   V V++ GG L I W  ++ HV+MTG A + ++G+   + 
Sbjct: 223 SGRTENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEFQPEN 268


>gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 276

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SV+M
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP               G      L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADAQAPSYPLVVDGQ-----LYSIAAVSMGNPHAVLRV-DDVSTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 282

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 133/280 (47%), Gaps = 7/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
            + F KM G+GN  +VID      +  S  I A +       FDQ++L+        D  
Sbjct: 3   TLKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWADRHTGIGFDQLLLVERPTSEQADFR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++V+MG
Sbjct: 63  YRIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMG 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P      IP     +    +                 V+MGNPHA+  VE+      +A
Sbjct: 123 QPRFRPSEIPF-LPLENTSGETLQYDVRLDGGNVTVGCVNMGNPHAVLTVENT-ESAAVA 180

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA+ V       
Sbjct: 181 ELGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACAAAVYGVRAGW 240

Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    + V + GG LLI W     VFMTG A+  +EG+L
Sbjct: 241 LDEGEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280


>gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
 gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
          Length = 286

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G GN  +VI+    +  +TS  I  L+       FDQ+++I     A  +   
Sbjct: 7   IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC   +L  +        T ET  G++V    +DG ISVDMG 
Sbjct: 67  RIFNADGSEVSQCGNGARCFFHYLRMKKLSSSNEITVETQSGMIVLSYKKDGLISVDMGV 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ D+K IP   +   +      +   ++ F    + +SMGNPHA+  +   L   DL  
Sbjct: 127 PVYDYKQIPFISTNTTLP--TVTVDDKSYEF----YPISMGNPHAVIKLAS-LQGVDLVK 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L K   F + VN+   +V    +L L+ +ERG G+T ACGS ACA+ V +      
Sbjct: 180 IGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVVAIQKRWA 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              VSV + GG L I       V + G A+  ++G+L+
Sbjct: 240 QNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277


>gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 276

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       ++      G      L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVQTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
 gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
          Length = 274

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  A+           D ++++     A  D  +R
Sbjct: 1   MRFTKMHGLGNDFIVIEAVEG-VDYSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  +  + ++  T ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        V +G PH I FV      + 
Sbjct: 118 MGSPIFESSKIPVKSEKQKFIDEPVKIDGKTYRL----SSVRVGVPHTILFVSSFEESF- 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F EG N+   +V   E++ +RTWERGVGLT ACGS A AS V S  L
Sbjct: 173 MKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSLL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +T R+V+V    G LL+EW ++N ++++GE ++ + G+++I
Sbjct: 233 GRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274


>gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
 gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
          Length = 297

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 133/286 (46%), Gaps = 12/286 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D       +T +   AL         DQI+++     A  D   R
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQTIEMTPERARALGDRHFGIGADQILVVERPTVADADFRYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     +   GILV  E  D  ++VDMG  
Sbjct: 64  IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDMGST 123

Query: 124 ILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
             + + +P         R  +    +     P           V++ NPHA+  V D++ 
Sbjct: 124 RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQVV-DNVD 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F+  VN    +V    ++ LR +ERG G T ACG+ ACA+V A 
Sbjct: 183 TAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGACAAVAAG 242

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                    V V+  GG L + W+ +  + MTG A+  + G++DI 
Sbjct: 243 IRRGLLESPVRVQTRGGVLTVAWNGDQ-LRMTGPAESVFTGQVDID 287


>gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1]
 gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1]
          Length = 276

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       +       G      L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276


>gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
 gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
          Length = 301

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/276 (43%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R    ++T++   A+++     +DQ+M++   +    +A +RI 
Sbjct: 20  FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L    N   G  +VDMG P   
Sbjct: 80  NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 198

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERGVGLT ACGSAAC + VA+  L +  R V
Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + ++HV MTG A  E+EG  D 
Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFDP 294


>gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1]
          Length = 292

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 19/297 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +        LS        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYIYVNCFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           RI N DGSE   CGN  RC+ +++  +    ++  T ET  GI    L A      +++V
Sbjct: 59  RIFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ +L  K IP+    D+                 +   VSMGNPHA+ FV  D    
Sbjct: 119 DMGKAVLVPKDIPVNSDLDRFISQPVEADGR----TWSVTCVSMGNPHAVIFV-GDTDSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H +F + +N    +V    +L +R WERG G T ACG+ ACAS VA+  
Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
                 +  + + + GG L I +  +  V M G A+   +G++     ++I+K +++
Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEVK---DEYIEKAKEN 287


>gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
 gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
          Length = 275

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/278 (35%), Positives = 133/278 (47%), Gaps = 14/278 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDA 62
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I         DA
Sbjct: 1   MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIATADASTEADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L  +  + S    T RG+L+A +  +G  SV+MG 
Sbjct: 61  HLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPLA               +       P    MGNPH  FFVE D     LA 
Sbjct: 121 PQLSWDEIPLAEEL----------ETLELPIEGAPSATGMGNPHCTFFVE-DAEVIPLAE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ IA V     L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGLT 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R V + + GG L I+W D+  V+MTG       G   
Sbjct: 230 GRKVQIDLDGGTLWIDWRDDG-VWMTGPTMHVANGSFT 266


>gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
 gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
          Length = 302

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 147/305 (48%), Gaps = 41/305 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-------------------------DNITSDAINA 37
           ++ + F KM G+GN  +V+D R                              +T     A
Sbjct: 6   TNGLPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQA 65

Query: 38  LSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96
           +        FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +  
Sbjct: 66  IGHRQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQ 122

Query: 97  FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156
               T RG L A++  +G  SV+MG P L W  IPLAR  D ++       P++      
Sbjct: 123 LHLTTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL------PIDGA---- 172

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
           P    MGNPH  FFV DD+   DLA FG  +  H ++ E  N+ IA++   + + +R WE
Sbjct: 173 PTATGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWE 231

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RGVG+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + 
Sbjct: 232 RGVGITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFS 290

Query: 277 GKLDI 281
           G L  
Sbjct: 291 GVLTP 295


>gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1]
          Length = 276

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       +       G      L +   VSMGNPHA+  V DD++   +
Sbjct: 121 GPPRFIPAEIPFVADAQALSYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVHTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
 gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
          Length = 293

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 128/276 (46%), Positives = 172/276 (62%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   + +  +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLSGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + S  ++   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAAC++ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + +NHV MTG A  E+EG+ D 
Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFDP 281


>gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 281

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
 gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
          Length = 276

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H ++                FDQ++++       VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  +   DG + V+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + +P       ++      G    L       +SMGNPHA+  V D+     +
Sbjct: 121 GAPRLQPEQVPFQAEQAALNYRVDVDGQSVEL-----AALSMGNPHAVLRV-DNTDDAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 235 WMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
 gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
          Length = 288

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 104/283 (36%), Positives = 142/283 (50%), Gaps = 15/283 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
            S +  F KM G+GN  +++D RG H  +T   I AL+        DQ++ +        
Sbjct: 17  HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D F+R  N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDM
Sbjct: 77  DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L+W+ +PL    D +                +P   SMGNPHA FFVED    +  
Sbjct: 137 GEPRLNWQDVPLVAEMDTLHL----------PLEGDPAAASMGNPHATFFVED----FAR 182

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +    
Sbjct: 183 LSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARRG 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
              R   V++ GG L IEW  NNHV MTG A   +EG +D+  
Sbjct: 243 LVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDLAA 285


>gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 277

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSN--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGNG+RC  ++      + + +FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K IP+  + DK+      +             V +G PH   FV DD+   
Sbjct: 119 DMGKPFFNSKDIPMNVTMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFV-DDITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 279

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +V+D       +  + A+           D +M++   + A  D  +
Sbjct: 1   MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVVLPSETA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK----ENRDGSISV 118
           R  N DG+E + CGNG+RC  R+L    R+K++ FT ET+ GI+  +    + +  ++ V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L    IP+     +++      +    +        VSMGNPHA+ FV DD  H
Sbjct: 119 DMGVPVLTGDDIPVRGFGTERVIAAPITVAGRTYK----MTCVSMGNPHAVIFV-DDAEH 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     H +F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                +RA  +++ GG + +EW ++ H+FMTG A+  + G 
Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGV 274


>gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
 gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
          Length = 289

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 122/276 (44%), Positives = 172/276 (62%), Gaps = 4/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A+++     +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVASR--VPYDQMMVLQRPRFDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DGSE  +CGNGMRCVV  +  +  + S TFET  G+L   +       +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHA+F+V++D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A++   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + ++HV MTG A  E+EG+ + 
Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEP 282


>gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
 gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
          Length = 302

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 148/305 (48%), Gaps = 41/305 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRG-------------------------CHDNITSDAINA 37
           ++ + F KM G+GN  +V+D R                              +T     A
Sbjct: 6   TNGLPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQA 65

Query: 38  LSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96
           +        FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +  
Sbjct: 66  IGHRQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQ 122

Query: 97  FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156
               T RG L A++  +G  SV+MG P L+W  IPLAR  D ++       P++      
Sbjct: 123 LHLTTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL------PIDGA---- 172

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
           P    MGNPH  FFV DD+   DLA FG  +  H ++ E  N+ IA++   + + +R WE
Sbjct: 173 PTATGMGNPHCTFFV-DDVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWE 231

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RGVG+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + 
Sbjct: 232 RGVGITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFS 290

Query: 277 GKLDI 281
           G L  
Sbjct: 291 GVLTP 295


>gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 276

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRLVPEEIP----FQTAEQAKSYSLDVDGQSVELA-AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
 gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
          Length = 281

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      +    I  L+  +    FDQ++++      S D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  +F+  R    +     +T  GI+  +   +G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP          +  +   +         VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPQEIPFVADAP----ESLYDIDLAGGEKLTIDVVNMGNPHAVTIVP-DVIAADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F   VN    ++   +   LR +ERGVG T ACG+ ACA+ ++     
Sbjct: 176 ARIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  V +++ GG L IEW + + V+MTG     +EG+LD++
Sbjct: 236 LLSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277


>gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4]
 gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4]
          Length = 271

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 16/279 (5%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI     A  D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      ++VDM  P
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDMDLP 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +L      +     KM      +    +        V MGNPH + F+ DD+ + +L + 
Sbjct: 119 LLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDIKNVNLPAI 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK  
Sbjct: 173 GPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAG 232

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 233 RKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
 gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
          Length = 303

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 140/289 (48%), Gaps = 18/289 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+ID R         N     +  +         D ++L    + A
Sbjct: 4   MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115
             D  ++I N DGS  + CGNG+RC+ RFL         + +  ET+ GI+      DG 
Sbjct: 63  DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQ 122

Query: 116 ISVDMGEPILDWKLIPLARSFDK--MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           I VDMG P LD + IP   +     + +   H+G  +     +   V MGNPH I  VE 
Sbjct: 123 ICVDMGTPFLDPESIPTTLTIGSAGLPQGECHLGSTS----LHVAAVGMGNPHLIVPVE- 177

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL +    ++G  L KH  F    N+   ++ S   L++R WERG G T ACG+ ACAS+
Sbjct: 178 DLENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACASL 237

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VA+  L  ++    V + GG L I W      VFMTG A+  ++G L  
Sbjct: 238 VATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVLTP 286


>gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 275

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 107/280 (38%), Positives = 151/280 (53%), Gaps = 16/280 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           +   + F KM G+GN  +VID R    ++T+    AL+        DQ++++     A  
Sbjct: 5   RGMRIPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA-- 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +RI N DGSEV++CGN  R V   L        F  ET+ G++ ++   DG +SVDM
Sbjct: 63  DVRMRIFNNDGSEVEACGNASRAVGLLL----GGTQF-IETLGGLIRSEARPDG-VSVDM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IP++ + D ++       PV    L NP  V++GNPH IFFV DD    DL
Sbjct: 117 GAPRLRWDEIPVSYAMDTLEM------PVGWEDLENPVGVNVGNPHVIFFV-DDADAVDL 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+   P+F E +N+++A V   + L LR WERG GLT ACG+ ACA+ VA+    
Sbjct: 170 ARLGPLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRK 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            T R V + + GG L I W +   + MTG A   +EG  +
Sbjct: 230 LTGRKVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269


>gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 276

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 276

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   +           G    L       VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFAPEDIPFQAAQQATRYSVEVDGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
 gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group]
          Length = 354

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 129/284 (45%), Gaps = 13/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 70  LHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYT 128

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF+          SF   T  G+++ +   DG + VDM
Sbjct: 129 MRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDM 188

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           G+PIL    IP      K +        V+         VSMGNPH + F   +     +
Sbjct: 189 GQPILSGPDIPTKLPSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHV 247

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA VVA
Sbjct: 248 DDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVA 307

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           +    +  R   V + GG L IEW + +NH++MTG A+  + G 
Sbjct: 308 AVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 351


>gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
 gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
          Length = 276

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D R     ++   I ALS        DQ + +   + A  D F
Sbjct: 1   MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITLERPE-AGADVF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSE ++CGN  RCV   L +   R      T+RG L  +    G+I  DMG P
Sbjct: 60  MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W+ +PLA + D          P++   + +P   SMGNPHA FFVE  L   D  + 
Sbjct: 120 SLAWQEVPLAEAMDTTHL------PIDLGAVADPAACSMGNPHATFFVE-TLEGLDWQAL 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L   HP+  +  N+  A V S E + L  WERG G T ACGS ACA++V +       
Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
           R   + + GG L +EW   +NHV M G     + G+ D  T
Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273


>gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
 gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
          Length = 276

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       ++      G      L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFTPAEIPFVADAQALNYPLEVDGQ-----LHSIAAVSMGNPHAVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276


>gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11]
 gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11]
          Length = 281

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 138/278 (49%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA
Sbjct: 10  TRLPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDA 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L            T RG+L+A++  +G  SV+MG+
Sbjct: 67  HLTFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQ 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW+ IPLA   D ++                P    MGNPH  FFVE+      LA 
Sbjct: 127 PQLDWQDIPLAEDVDTLEL----------PIEGTPTATGMGNPHCTFFVEN-AEVIPLAE 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 176 FGARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              V + + GG L ++W D+  V+MTG      +G   
Sbjct: 236 GHKVRIDLDGGTLWVDWRDDG-VWMTGPTMHVADGHFT 272


>gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
 gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
          Length = 279

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 110/282 (39%), Positives = 148/282 (52%), Gaps = 6/282 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M      F KM G GN  +VID        T D I AL+       FDQ++ I   + A 
Sbjct: 1   MACMTRPFIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DAF+R+ N DGS V++CGN +RCV   L         T +T  G   A    D  ++VD
Sbjct: 60  -DAFMRVWNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P LDW  +PLA   D    +   +GP++   L  P  VSMGNPH +FF +     + 
Sbjct: 119 MGRPRLDWTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQDDGF- 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+L+  HP+F EGVN+  A V   + + LR WERG GLT ACG+ ACA+ VA+   
Sbjct: 177 VTGSGSLVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARR 236

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T+R  +V + GG L+I+W    +HV MTG  + E  G L 
Sbjct: 237 GLTDRKATVVVDGGELVIDWDPATDHVLMTGPVEIERTGALS 278


>gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
 gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
          Length = 368

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R         N     +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLIVEGRQGQLPDAISNPDPAWVRRICDRRFGVGGDGLILALPAQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI+N DGSE + CGNG+RC+ R+L         + +  ET+ G++  +   DG 
Sbjct: 60  DGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L  + IP     +        +     L       V MGNPH +  V DDL
Sbjct: 120 LRVDMGPPFLSSEGIPTTLMPEDGLPQGVLLLEGEQL---KVAAVGMGNPHVVVPV-DDL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  HP F    N+   +V + E L++R WERG G T ACG+ ACA++VA
Sbjct: 176 ASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L   +    V + GG L+IEW D    V MTG A+  ++G L   
Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVLTPD 283


>gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
 gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
          Length = 271

 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 16/279 (5%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI     A  D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +      ++VDM  P
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLVEEVTVDMDLP 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +L      +     KM      +    +        V MGNPH + F+ DD+ + +L + 
Sbjct: 119 LLTNSR-QINTPDGKMLAKTITVDGKEYK----GTFVCMGNPHLVIFI-DDIKNVNLPAI 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F +  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK  
Sbjct: 173 GPKLENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAG 232

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 233 RKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
 gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
          Length = 296

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 130/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV   L          +  + T ET  G++  K   + S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPL   F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL
Sbjct: 128 GQPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293


>gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470]
 gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470]
          Length = 283

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           MQ   + F K +  GN  + ++        +    ++  + +     D I+ +   + A+
Sbjct: 4   MQEGFMHFTKWQACGNDFVFVNAMTMDIRPVVKKCVSICNRNFGIGADGIIFVLPSEKAT 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +   +RI N DGSE + CGNG+R   ++      + +  F+ ET  GIL  +   DG + 
Sbjct: 64  L--QMRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPDGKVR 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+   IP+    D M  +R      N L       VSMGNPH + F  DD+  
Sbjct: 122 VDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFT-DDIDR 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G+ L     F    N+  A++     L +R WERG G+T ACG+  CA+VVA+ 
Sbjct: 178 ISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATVVAAI 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281
                     V + GG L I W  ++  HVFMTG A+K +EG+  I
Sbjct: 238 LNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283


>gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
 gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
          Length = 288

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 124/275 (45%), Positives = 172/275 (62%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +++    A++++    +DQ+M++   +    +AF+RI 
Sbjct: 9   FSKMNGIGNEIVVLDLRDHPVAVSAADARAIASE--VPYDQLMVLQPPRTPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGSE  +CGNGMRCV R + +     + TFET  G+L          +VDMG P L W
Sbjct: 67  NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  +DLA FG LL
Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAHDLARFGPLL 185

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+++A++   + + +RTWERGVGLT ACGSAACA+ VA+  L + NR V 
Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           + + GG L IEW   ++HV MTG A  E+EG+ D 
Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFDP 280


>gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 276

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP     ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPFEAP-EQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
 gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
          Length = 281

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 136/283 (48%), Gaps = 7/283 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D  G    ++ + I  L         DQI++I       VD 
Sbjct: 1   MRLRFTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N  G EV+ CGNG RC VR++       + +   ET+  +L      DG + VDM
Sbjct: 61  RYRIFNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
             P+ D   +P  A        + F + P+    +    V+SMGNPHA+  V D      
Sbjct: 121 NRPVFDLARVPFDASGLTPRLVNGFELWPLADAGVE-VAVLSMGNPHAVMRVADVDAAPV 179

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
            A+ G  +  H  F   VN    +V S   + LR +ER  G T ACG+ ACA+VVA   L
Sbjct: 180 -AAVGPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
              +R V V   GG LLIEW D++  V MTG A   +EG++++
Sbjct: 239 GWLDRRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281


>gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
 gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
          Length = 276

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             V+F KM+G GN  +VID       +T+  I  ++       FDQ+++I   ++ SVD 
Sbjct: 1   MKVNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC+ RF+ +     R+     T+  +L  K   DG +SV M
Sbjct: 61  HFRIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP   S        F+   V++  ++   VV++GNPHAI  VE  +   ++
Sbjct: 121 GVPRFEPTEIPFIAS----GVANFYDIAVDNQIVKLG-VVNIGNPHAIIPVER-INAEEV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L+ H  F EG N+   +V   +++ LR +ERG G T ACGS ACA+V       
Sbjct: 175 GKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVGRRCG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
                V V   GG L I+W      V MTG A   + G+
Sbjct: 235 LLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGE 273


>gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
 gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
          Length = 280

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/289 (38%), Positives = 151/289 (52%), Gaps = 13/289 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +VID R    ++T + + AL+        DQ + I   +   
Sbjct: 1   MSIRGTHFLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           V AF+ + N DG  V+SCGN  RCV R L    + +S   ET+ G++ A+      I VD
Sbjct: 61  V-AFMGLRNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   L W+ IPLA + D +  +   +GP     L +P  VSMGNPHA+FFV DD    D
Sbjct: 120 MGPARLTWQEIPLAGAADTLHIE-LSVGP-----LSDPCAVSMGNPHAVFFV-DDADAID 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA++G L+  H +F    N+    + +   L +R WERGVG+T ACG+ ACAS VA+   
Sbjct: 173 LATWGPLIEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRR 232

Query: 240 HK-TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
                R   V + GG L I W + + HV MTG A   + G LD   G W
Sbjct: 233 GLIAGRTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279


>gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 276

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPTNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   +           G    L       VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFAPQEIPFQAAEQASSYSVELDGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
 gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
          Length = 276

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 17/283 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  + I+          +    +S        D ++LI     A  D  +R+ N 
Sbjct: 1   MHGLGNDYVYINCLNQKLKHPEEIARIVSDRHFGIGSDGLILICPSDRA--DFQMRMFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDG---SISVDMGE 122
           DGSE   CGNG+RCV +++  +   +R S   ET  G+  L      DG   S+ VDMG+
Sbjct: 59  DGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTVSSVRVDMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L  K IP+   +D        +    +L       VSMGNPHA+ F  DD+ +  LA 
Sbjct: 119 ASLKAKDIPVETDYDDFISQPMLVRGEVYLVT----CVSMGNPHAVVFC-DDVDNLPLAE 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L  +H  F EGVN    ++   ++L +R WERG G T ACG+ ACASV A+      
Sbjct: 174 IGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASVAAAIVNENC 233

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             +  V+V++LGG L I  H +  V M G A   ++G +++  
Sbjct: 234 DFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIELDA 276


>gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 276

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
 gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
          Length = 293

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 127/276 (46%), Positives = 173/276 (62%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R L +   ++  TFET  G+L       +G  +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD++ YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWV-DDIHAYDLGQFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + ++HV MTG A+ E+EG+ D 
Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFDP 281


>gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1]
 gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1]
          Length = 296

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV   L          +  + T ET  G++  K   + S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL
Sbjct: 128 GQPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293


>gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
 gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
          Length = 354

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 137/289 (47%), Gaps = 17/289 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R    ++       + +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQDQLDVAISDPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E + CGNG+RC+ R+L           +  ET  G++  +   +G 
Sbjct: 60  DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119

Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + VDMG P L+   IP        + R    I  V      N   V MGNPH +  V DD
Sbjct: 120 LRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDGVP----LNVASVGMGNPHVVVPV-DD 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L       +G  L  HP+F    N+   +V S   L++R WERG G T ACG+ ACA++V
Sbjct: 175 LSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGTGACATLV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           A+  L   +    V + GG LLI W      V MTG A+  ++G +  +
Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDGVITPE 283


>gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
 gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
          Length = 281

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/277 (35%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID RG    +T     AL        FDQ+ +I    D+  D  +
Sbjct: 13  LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDS--DVEL 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R       +   T  T RG+L A +  DG  SV+MGEP+
Sbjct: 71  TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           + W+ IPL  + D +          N      P    MGNPH  FFVE D    DL + G
Sbjct: 131 MGWRDIPLKGACDTL----------NLPIDGTPVATGMGNPHCTFFVE-DADAIDLETLG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
               +HP+F +  N+  A V   + L +R WERGVG+T A GS++CA  V++     T R
Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V + + GG + ++W  +  V+MTG     + G+L  
Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGELTP 275


>gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
 gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 29/286 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D  R         AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----S 115
             +RI N DGSE   CGNG RCV +++       +K  T +T  GI V K + +G    +
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTA 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VD+G P L+ + +                      F      VSMGNPH + FVE D+
Sbjct: 120 VTVDIGSP-LETEAVDFG-----------------DQFPFQSTRVSMGNPHLVTFVE-DI 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 TQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +       R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 221 AVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 276

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WLDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
 gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
          Length = 284

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++L+       VD   
Sbjct: 3   LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D+ D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPDEIPFVTQVDE-DIEGLYSLELADDKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 241 ASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 276

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   + +   VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQATCYTVDVDGQHV-DMAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
 gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
          Length = 274

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 140/289 (48%), Gaps = 32/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++          + AI   +       D ++LI   + A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---------NRD 113
           RI N DGSE   CGN  RC+ +++  +    +K+ T ET+ GI   +             
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRKLSGPHEEV 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++VDMG P+              +      I   ++ +     V+SMGNPH + FVE 
Sbjct: 123 TEVTVDMGCPV--------------IGETALEIEAGDYFYT--GTVISMGNPHLVIFVE- 165

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ + +L   G LL  HP+F    N+   +  S + + ++ WERG G+T ACG+ ACA+ 
Sbjct: 166 DITNINLPVIGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATA 225

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VAS    KT R   V M GG L I W + + HV+MTG A K +EG+L+I
Sbjct: 226 VASAVRGKTGRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274


>gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 277

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSN--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGNG+RC  ++      + + +FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K IP+  + DK+      +             V +G PH   FV DD+   
Sbjct: 119 DMGKPFFNSKDIPMNVTMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFV-DDITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS + S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 276

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP   +           G    L       VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRLVPEEIPFQAAEQAKSYSLDADGQTVEL-----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 276

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNVPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642]
          Length = 276

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQASCYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
 gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
          Length = 280

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 16/282 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +DF KM G+GN  + I D  G   + T+ A    +       D +++I D + A  D  +
Sbjct: 1   MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
           RIIN DGSE + CGNG+RC  +++     +++K FT ET  GI+  +     +N+   I+
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG P  +   IP+  +  ++  +   +   N         + MG PH + +V DD+  
Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGENWKVT----SLLMGVPHTVTYV-DDVDT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G L  KH  F +  N++ A+     ++ +RTWERG G T ACG+ +C+  VAS 
Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
              +T R V +++  G L IE+  ++ +V+MTG A   + G 
Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTGT 275


>gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46]
 gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46]
          Length = 293

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 120/277 (43%), Positives = 165/277 (59%), Gaps = 4/277 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+R     +  +   A++ D  + FDQ+M++HD      DA +RI
Sbjct: 8   RFLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSE  +CGNG RCV   + +        +  T E+  G+L      D   +VDMG 
Sbjct: 68  YNRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGP 127

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDL  
Sbjct: 128 PHLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGR 187

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F E  N+S+A+V + + + LR WERG GLT ACGSAACA++VA+  L  T
Sbjct: 188 IGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLT 247

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R  +V + GG L+I W +++HV MTG  + EWEG+ 
Sbjct: 248 GRRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284


>gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
 gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
          Length = 281

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 8/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++      +VD 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP      +   D   I   N+  L    VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPQEIPFIADAPEALYD---IALANNEQL-TIDVVNMGNPHAVTIVP-DVITADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F + VN    ++   +   LR +ERGVG T ACG+ ACA+ ++     
Sbjct: 176 ARLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + +V +++ GG L IEW + + V+MTG     +EG++D+
Sbjct: 236 LLDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDL 276


>gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
 gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
          Length = 321

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 5/298 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDAS 59
           M S+ V F KM G+GN  +V D R    N+  + I AL + D    FDQ++ +       
Sbjct: 15  MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITVERSPL-G 73

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISV 118
           VDAF+RI NCDGS+V +CGN  RCV R L         T ET  G+L A       +++V
Sbjct: 74  VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L+W  IPLA  F         IGP++  +L  P  +SMGNPHAIF+V+ D+  +
Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVK-DVEAH 192

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G LL  HP+F EG N+S+A V +   + L+ WERG GLT ACG+AACA+ VA+  
Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
             K  R  ++ + GG + IEW + ++HV MTG  + E+EG++D+ T +W +    D+A
Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310


>gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
 gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
          Length = 280

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 130/282 (46%), Gaps = 19/282 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V++      +     I AL+       FDQ+++I    DA+ D   RI
Sbjct: 6   FSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDYAYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRG-ILVAKENRD----GSISV 118
            N DGSEV+ CGNG RC  ++L         +       RG I +A    D        V
Sbjct: 66  YNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSITIAYVGTDSDGSEQYRV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP            F     +R +             +VSMGNPHA+  V DD+   
Sbjct: 126 DMGEPDFTP--------FTPAQTERLYQPVSAAGETLEMGIVSMGNPHAVCVV-DDVATA 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +A+ G  L +HP+F   VN    ++     + LR +ERG G T ACG+ ACA+V     
Sbjct: 177 PVAAVGAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGTGACAAVAVGIM 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
               +R V V++  G L I+W      ++MTG A   + G+L
Sbjct: 237 RGLLDREVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278


>gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic;
           Short=DAP epimerase; Flags: Precursor
 gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group]
          Length = 357

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 129/284 (45%), Gaps = 13/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A      +     D ++ +    +   D  
Sbjct: 73  LHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYT 131

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC  RF+          SF   T  G+++ +   DG + VDM
Sbjct: 132 MRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDM 191

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           G+PIL    IP      K +        V+         VSMGNPH + F   +     +
Sbjct: 192 GQPILSGPDIPTKLPSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHV 250

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA VVA
Sbjct: 251 DDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVA 310

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           +    +  R   V + GG L IEW + +NH++MTG A+  + G 
Sbjct: 311 AVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354


>gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
 gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
          Length = 276

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +IT               FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP   S    ++   +   V    + +   VSMGNPHA+  V +D+ +  +
Sbjct: 121 GAPRLVPADIPFQAS----EQAASYALDVEGQSV-DIAAVSMGNPHAVLRV-NDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276


>gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
 gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
          Length = 293

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 129/276 (46%), Positives = 170/276 (61%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWV-DDVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW D +NHV MTG A+ E+EG+ D 
Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFDP 281


>gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
 gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
          Length = 364

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 132/288 (45%), Gaps = 15/288 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAI---NALSTDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R        +  D +              D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RFL         K +  ET  G++  +   DG 
Sbjct: 60  QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L+   IP       +D        +    L     V MGNPH +  VE DL
Sbjct: 120 LRVDMGAPFLEPSSIPTTLPL--VDGLARGSADLADRALE-VAAVGMGNPHVVVPVE-DL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  H +F    N+   +V +   L++R WERG G T ACG+ ACA++VA
Sbjct: 176 NAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L   +    V + GG L I W   +  V MTG A   ++G L   
Sbjct: 236 AVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVLSPD 283


>gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 246

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 119/252 (47%), Gaps = 9/252 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    + +
Sbjct: 121 PNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGG 254
              V V++ GG 
Sbjct: 235 AEEVRVELPGGR 246


>gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6]
 gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6]
          Length = 297

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 135/294 (45%), Gaps = 15/294 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  +V+D       +++     L         DQI+++       VD 
Sbjct: 1   MRLHFTKMQGAGNDFVVLDATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDF 60

Query: 63  FIRIINC-DGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVD 119
             RI N   G EV+ CGNG RC  RF+      +      ET+  ++      DG ++VD
Sbjct: 61  RYRIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVKVETVNSLIELHVEADGRVTVD 120

Query: 120 MGEPILDWKLIP-----LARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFF 170
           M +PI +  LIP     L+        + F + P+       P V    +SMGNPHA+  
Sbjct: 121 MNQPIFEHALIPFDSAGLSARPHNGHGNGFELWPLQLPGASLPSVDVAVLSMGNPHAVQR 180

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V  D+    +A  G  +  H  F   VN    +V S   + LR +ERG G T ACG+ AC
Sbjct: 181 V-HDVDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGETLACGTGAC 239

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           A+VVA   L   +  V V+  GG L I W    H V MTG A+  + G +D+ T
Sbjct: 240 AAVVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDLPT 293


>gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5]
          Length = 276

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
 gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
          Length = 275

 Score =  319 bits (817), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + I+               L         D ++LI   + +  D  +
Sbjct: 1   MIFTKMHGLGNDYVCINCFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            I N DGS    CGNG+RC+ +++       +++ + ET  GI    L  ++ +     V
Sbjct: 59  EIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAMV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+   IP+    D +  D   +   N+        +SMGNPHA+ F+E ++   
Sbjct: 119 DMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLE-EINGI 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  L  HP F E  N+    VT+ + +++R WERGVG T ACG+ ACA+VVAS  
Sbjct: 174 SLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
              T+  V VK+LGG L + W    NHVF+ G A K ++G L
Sbjct: 234 NDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275


>gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
 gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
          Length = 269

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 16/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     IT      ++       FDQ+ +I        DA +
Sbjct: 1   MTFMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVIEP---GKGDAHL 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L     +      T RG L A++  DG  SV+MG P 
Sbjct: 58  VFYNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA   D ++                P    MGNPH  FFV  D     LA FG
Sbjct: 118 LLWHEIPLAEEMDTLEL----------PIEGGPTATGMGNPHCTFFVA-DAEAIPLAEFG 166

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  NL +A++T  + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 167 ARYEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 226

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V + + GG + I+W ++  V+MTG     +   L  +
Sbjct: 227 KVQIDLDGGTIWIDWREDG-VWMTGPTMHVFSATLTPE 263


>gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 276

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IP    F   ++ + +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA-AVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  +P F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
 gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
          Length = 279

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++M+ F KM+G GN  +VID      ++++D I  L+       FDQ++L+     A  D
Sbjct: 2   ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVE--SSAVAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV  CGNG RC VRF+  +   +++  + ET  GI+  K    G ++V+
Sbjct: 60  FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      IP   +         H     +    N   VSMGNPHA+  V DD+    
Sbjct: 120 MGAPRFKPDAIPFVAASAAT-----HYALEVNDQAFNIAAVSMGNPHAVLTV-DDVETAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +  HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ V     
Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            + +  V V   GG L I W   +  V MTG A   + G++D+  
Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDLDA 278


>gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
 gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
          Length = 281

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  ++       FDQ++++      +VD 
Sbjct: 1   MLLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R   K+     +T  GI+  +   +G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP        + +  +   + +       VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFMPHEIPFVTE----EFEALYTLELANEQSLKIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  H  F + VN    ++   + + LR +ERGVG T ACG+ ACA+ V+     
Sbjct: 176 ATMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 236 LLANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277


>gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
 gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
          Length = 279

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 146/280 (52%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ FAKM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFAKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P+LD   IP  A+  +K    +         FL     +SMGNPH +  VE D+ H ++
Sbjct: 121 VPVLDPSKIPFNAKRVEKTYLLQTSSSHAMETFLCG--AISMGNPHCVLEVE-DIEHAEV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL ++  F +GVN+   +V     + LR +ERG   T ACG+ ACA+        
Sbjct: 178 ERIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQLQG 237

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           K N+ V V + GG L I W  + N ++MTG A+  ++G++
Sbjct: 238 KLNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277


>gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
          Length = 282

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVID-----MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +DF KM G+GN  + +D                 +               L+        
Sbjct: 1   MDFIKMHGLGNDFVCLDRFLDPAENNPAETDYSELAQRLCHRQLGIGGDGLLLILPSEKA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDG 114
           DA +RI N DGSE + CGNG+RC  R++     +++   T ET+ GI    L  K+ R  
Sbjct: 61  DARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQMKDGRVY 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG+P L  K IP+    D++   R  +             VS+GNPH + F+ DD
Sbjct: 121 GVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGIT----AVSVGNPHCVLFL-DD 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               D+ + G  L KHP F    N+   RV S E + ++ WERGVG T ACG+ ACASVV
Sbjct: 176 FAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACGTGACASVV 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A+    +T R ++V + GG L IE+ +   + MTG A+  + G+L
Sbjct: 236 AAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280


>gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 284

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 142/280 (50%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++       VD   
Sbjct: 3   LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D+ D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPDEIPFVTQVDE-DIEGLYSLELADDKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
 gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
          Length = 290

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 118/276 (42%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T++   A+++     +DQ+M++   +    +AF+ I 
Sbjct: 9   FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L   +    G  +VDMG P   
Sbjct: 69  NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  +DL  FG L
Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWV-DDVNAHDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG G+T ACGSAACA+ VA+  L + +R V
Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GGGL IEW + ++HV MTG A  E+ G  D 
Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFDP 283


>gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121]
 gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121]
          Length = 269

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D          D I  L        FDQ++++    +  +D   RI NC
Sbjct: 1   MHGLGNDFVVVDAVSRKVYFNKDMIARLGDRHTGIGFDQLLVVEPPTNPDMDFRYRIFNC 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG+EV+ CGNG RC   F+  +  +       ET  G +  +   +G ++VDMG P  + 
Sbjct: 61  DGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P   + +    D   +   ++        VS+GNPHA+  V D+L    +   G  +
Sbjct: 121 ADLPFTGTANGAFYD-IPVAGESYPITP----VSVGNPHAVHKV-DELSDEYVERIGEAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H +F   VN+   ++ S   ++LR +ERGVG T ACG+  CA+VVA          V 
Sbjct: 175 ESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAKVK 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +LGG L IEW  +   + MTG   K +EG++ +
Sbjct: 235 ANLLGGELTIEWQGEGQPILMTGPTAKVFEGQIYL 269


>gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
 gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
          Length = 355

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 138/289 (47%), Gaps = 17/289 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R    +        + +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E + CGNG+RC+ R+L           +  ET  G++  +   +G 
Sbjct: 60  DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119

Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + VDMG P L+   IP        + R    I  V      N   V MGNPH +  VE D
Sbjct: 120 LRVDMGAPFLESASIPTTLEPLAGLPRGALEIDGVP----LNVASVGMGNPHVVVPVE-D 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L       +G  L  HP+F    N+   +V + + L++R WERG G T ACG+ ACA++V
Sbjct: 175 LSRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           A+  L   +    V + GG LLI W   +  V MTG A+  ++G +  +
Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDGVITPE 283


>gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
 gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
          Length = 305

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 27/305 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +   + F KM G GN  + +D      DN +  AI+          D ++LI +   A  
Sbjct: 3   RRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG--ILVAKENRDGSI 116
           D F+ + N DGS+ Q CGNG+RCV +F+       + + T +T+ G  IL  K   DG +
Sbjct: 61  DFFMEMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKV 120

Query: 117 ---SVDMGEPILDWKLIPLAR---------SFDKMDRDRFHIGPVNHLFL-----RNPFV 159
               V+MG PIL+   IP+             + +         V+   +          
Sbjct: 121 ETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTA 180

Query: 160 VSMGNPHAIFFVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
           VSMGNPHAI +++ D+    +++   G     H  F E +N    +V    +L++R WER
Sbjct: 181 VSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER 240

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWE 276
           G G T ACG+ ACAS+VA+      +   ++ +LGG L I W  + N V++ G AK  + 
Sbjct: 241 GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFT 300

Query: 277 GKLDI 281
           G++DI
Sbjct: 301 GEVDI 305


>gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 284

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 15/285 (5%)

Query: 11  MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V++        IT +   AL+        DQI+L+        D   RI N
Sbjct: 1   MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DG EV+ CGNG RC VRF+  +    +     E    +L  K + DG + VDMG PI D
Sbjct: 61  ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120

Query: 127 WKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181
             LIP      +  +   +  +  P++     +  V  +SMGNPHA+  V  D+    + 
Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVV-GDVDSAPVL 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ + +HP F   VN+   +V +   + LR +ERG G T ACG+ ACA VV+      
Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L I W        + V MTG A   +EG+ +I
Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284


>gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
 gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
          Length = 293

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 119/287 (41%), Positives = 164/287 (57%), Gaps = 5/287 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V D R     +T D I  L        FDQ++ +       VDAF+RI N 
Sbjct: 1   MNGLGNDFVVWDAREKPLRLTKDQIAKLGDREHGIGFDQMITVERST-CGVDAFMRIHNS 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILDWK 128
           DG +V +CGN  RC+ R L     +   T ET  G+L A +     +++VDMG+P L+W 
Sbjct: 60  DGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLNWD 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA  F         IGP++   L  P VV+MGNPHAIF+V+ D+  YDLA  G LL 
Sbjct: 120 QIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVK-DVEAYDLARVGPLLE 178

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
           +HP+F EG N+S+A +     + ++ WERG GLT ACG+AACA  VA+    KT R  ++
Sbjct: 179 RHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKTTI 238

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            + GG + IEW + + HV MTG  + E+EG++DI+T  W K    D 
Sbjct: 239 HLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRKTAGGDA 285


>gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 276

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 139/282 (49%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPDEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 276

 Score =  317 bits (814), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP    F+  ++   +   V+   + +   VSMGNPHA+  V +D+ +  +
Sbjct: 121 GAPRLVPADIP----FEATEQAVSYALDVDGKTV-DIAAVSMGNPHAVLRV-NDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HEWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276


>gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
 gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
          Length = 290

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/277 (43%), Positives = 166/277 (59%), Gaps = 3/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+++D+R     +++    A++      +DQ+M++   +     AF+RI 
Sbjct: 9   FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +       +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V DD+  YDL   G L
Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWV-DDIEAYDLERLGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A V     + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + + GG L IEW + ++HV MTG A  E+EG  D  
Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFDPD 284


>gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
 gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
          Length = 279

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R   + + S    +   +       D ++ +    D   D  
Sbjct: 1   MYFFKYQGLGNDFILIDNRSSSELLLSSGQILKMCNRHFGIGADGVIFLL-SGDKVSDYG 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           + I N DGSE + CGNG+RC++ F+++        K +  +T+ GI+ A+      + V+
Sbjct: 60  MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119

Query: 120 MGEPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P+   K IP   S   + +      I   N L       V+MGNPH I FVED    
Sbjct: 120 MGTPLFLNKQIPTTLSDKDNTVINYPLEIEKKNWLVT----CVNMGNPHCITFVEDT-NL 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G L   H  F E +N     +     L +R WERG G T ACG+ ACASVVA  
Sbjct: 175 INLEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             ++  R  +V++ GG LLIEW ++ N V+MTG A++ + G+ +
Sbjct: 235 ITNRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278


>gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
          Length = 274

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 141/292 (48%), Gaps = 32/292 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++       N    AI   +       D ++LI   + A  D
Sbjct: 2   TEPIRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--------- 110
             +RI N DGSE   CGN  RC+ +++  +    +K+ T ET  GI   +          
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSR 119

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                ++VDMG P++    + +                    +     VVSMGNPH + F
Sbjct: 120 EEVIEVTVDMGCPVVGEAALEIEA----------------GGYFYTGTVVSMGNPHLVIF 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VE D+ + +L + G LL  HP+F    N+   +V +++ + ++ WERG G+T ACG+ AC
Sbjct: 164 VE-DIANINLPAIGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGAC 222

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           A+ VA     KT R   V M GG L I W + + HV+MTG A K +EG+L+I
Sbjct: 223 ATAVAGVIRRKTGRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274


>gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 277

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC  ++        +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+    DK+      +             V +G PH   F+ DD+   
Sbjct: 119 DMGKPFFKSQDIPMNVDMDKVIDVDLDVNGE----TVTVSSVLLGVPHTEVFI-DDITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217]
 gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217]
          Length = 277

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D R     +T   I A++       FDQ+ +I        DA
Sbjct: 7   TGLPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDA 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L     +      T RG LVA +   G  SV+MG+
Sbjct: 64  HLTFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQ 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  IPLA + D ++      GPV            MGNPH  FFV  D     LA 
Sbjct: 124 PQLDWAEIPLAEAMDTLEL-PIEGGPV---------ATGMGNPHCTFFVA-DAEAVPLAQ 172

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 173 FGPRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 232

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R V + + GG + ++W ++  V+MTGE      G L  
Sbjct: 233 GRRVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVLTP 270


>gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205]
 gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205]
          Length = 284

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 139/280 (49%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D   
Sbjct: 3   LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDADFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP   + +  D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPAEIPF-LTDEHEDTEGLYKLGLADNKSINIDVVNMGNPHAVTIVP-DVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F   VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     ++ +LD++
Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280


>gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
 gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
          Length = 277

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D RG    +T   I A++       FDQ+ +I        DA
Sbjct: 7   TGLPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDA 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R L     +      T RG LVA +   G  SV+MG+
Sbjct: 64  HLTFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQ 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  IPLA + D ++      GPV            MGNPH  FFV  D     LA 
Sbjct: 124 PQLDWAEIPLAEAMDTLEL-PIEGGPV---------ATGMGNPHCTFFVA-DAEAVPLAQ 172

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 173 FGPRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLT 232

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            RAV V + GG + ++W ++  V+MTGE      G    
Sbjct: 233 GRAVRVDLDGGTIHVDWREDG-VWMTGETAHVASGVFTP 270


>gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125]
 gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125]
          Length = 286

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/287 (34%), Positives = 147/287 (51%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + +D        + + + A+     +     D ++LI     A V  
Sbjct: 1   MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPV-- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115
            +R+ N DGSE ++CGNG+RCV +F      +K  SF  ET+ G++ A  + +      +
Sbjct: 59  KMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVDT 118

Query: 116 ISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++V+MGEP L    IP+      ++  + F IG   +        VSMGNPHAI F+ D 
Sbjct: 119 VTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRLT----AVSMGNPHAIMFI-DT 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL KH  F + VN+   +V S   +  R WERG G+T ACG+ ACA+VV
Sbjct: 174 IEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAVV 233

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           AS     T   + V+V +LGG L I W +N  V MTG A+   EG  
Sbjct: 234 ASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEGTY 280


>gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
 gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
          Length = 293

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 124/277 (44%), Positives = 164/277 (59%), Gaps = 4/277 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+RG    +      A++ D  + FDQ+M++HD   A  DA +RI
Sbjct: 8   RFLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSE  +CGNG RCV   +          +  T ++  G+L          +VDMG 
Sbjct: 68  YNTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGP 127

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPLA  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDLA 
Sbjct: 128 PRLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLAR 187

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F E  N+S+A+V   E + LR WERG GLT ACGSAACA++VA+  L  T
Sbjct: 188 IGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLT 247

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R   V + GG L+I+W +++HV MTG  + EWEG L
Sbjct: 248 GRRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284


>gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
 gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
          Length = 269

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +  ++ D I  L+       FDQ++++    D   D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF  L     +      T  G LV   + +  ++V+MG P  + 
Sbjct: 61  DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P    F     ++ ++ P + +       VSMGNPH +  VE D+    + S G LL
Sbjct: 121 ASLP----FRANKVEKTYLLPTD-VQTVLAGAVSMGNPHCVIRVE-DIDSAPVESVGPLL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG G T ACG+ ACA+ V           V 
Sbjct: 175 ERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRVR 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           V + GG L I W  +   V+MTG A   ++G++++
Sbjct: 235 VDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269


>gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
          Length = 304

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 145/286 (50%), Positives = 193/286 (67%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GN+I+V+D+RG    I++ A  AL+ D  T FDQIM IHD +    DA++R
Sbjct: 13  VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IIN DGSE ++CGNG RCVV+ L +   R+ FTFET  GIL A E  DG I+VDMG P  
Sbjct: 73  IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F         IGP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG 
Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++    +T R 
Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V+V + GG LLI+W D++HV MTG A+  W G+LD  TG +++   
Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVRDET 298


>gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
 gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
          Length = 272

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 135/278 (48%), Gaps = 15/278 (5%)

Query: 11  MEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  + ++      D+  S AI           D +++I    D   D  +R+ N 
Sbjct: 1   MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDD--CDFKMRMFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVDMGE 122
           DGSE + CGN  RC+ +F+  +    +   T ET+ G+   K     +    +++VDMGE
Sbjct: 59  DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +  LIP   +   +  +       N     N   VSMGNPHA+ F    +   DL  
Sbjct: 119 PIFESGLIPTTINKPSIINEPVTF---NSEIKYNITCVSMGNPHAVIFTTG-IDKLDLNK 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +     +F    N     V S + + +R WERG G T ACG+ ACASVVA+     T
Sbjct: 175 IGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNGHT 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            R  +V++LGG L IEW + +N V++TG A   +EG +
Sbjct: 235 GRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272


>gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
 gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
          Length = 280

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 139/283 (49%), Gaps = 16/283 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KMEGIGN  + ID       +    I  +S        D +++I + +    D  
Sbjct: 1   MLKFTKMEGIGNDYIYIDGIHQDVPMNPHFITKISDRHFGIGSDGVIVIQESEI--CDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGNG+RC  +F+      K+     ET+ GI    L+   N+   + 
Sbjct: 59  MRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKVQYVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL  K IP     ++M  +   +    +        +SMGNPH + ++      
Sbjct: 119 VNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLT----SLSMGNPHTVIYMNH--LD 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +++   G    KH +F E VN     V + + L +R WERG G T ACG+ ACA + AS 
Sbjct: 173 FNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAVMYASY 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                +  V V++LGG L I + +N  ++M+G A   +EG + 
Sbjct: 233 INGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEGIIQ 274


>gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
 gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
          Length = 291

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/288 (41%), Positives = 166/288 (57%), Gaps = 5/288 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V D R     +T   I  +   +    FDQ++ +     +   AF+RI N 
Sbjct: 1   MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITVEPA-SSDAYAFMRIHNR 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILDWK 128
           DGSEV +CGN  RC+ R L       S T +T  G+L+A  +  +  +SVDMG P L+W 
Sbjct: 60  DGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLEWD 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA  F         IGP++   L +P VV++GNPHAIF+V DD+  +DL  FG LL 
Sbjct: 120 QIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWV-DDIEAHDLERFGPLLE 178

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HPMF E  N+S+A++     + L+ WERGVGLT ACG+AACA+ VA+    +  R  +V
Sbjct: 179 CHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKCTV 238

Query: 249 KMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            + GG L IEW ++N H+ MTGE   E+EG+L++ T  + K    D A
Sbjct: 239 HLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286


>gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF]
 gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii]
          Length = 281

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 8/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D 
Sbjct: 1   MLLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+M
Sbjct: 61  KYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+
Sbjct: 121 GYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F E +N    +V   + + LR +ER VG T ACG+ ACA+ V+     
Sbjct: 176 AGIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 LLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 276

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/282 (34%), Positives = 137/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP   + ++  R    +   N         VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+    V   +   LR WER  G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
          Length = 277

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 140/283 (49%), Gaps = 13/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D      ++T + I  LS       F+Q++++    D S+D   
Sbjct: 1   MRFSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG+RCV RF+       +++    T  G +      D  ISV+MGE
Sbjct: 61  RIYNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP    F +  ++     P   +      VVS+GNPH I  VE  +    L  
Sbjct: 121 PIFEPDKIPFI--FPQYQKNYILFLPTQTILCG---VVSIGNPHCIVLVE-TIESVSLNI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F +  N+S  R+   E+++LR +ERGVG T ACGSAACA+V         
Sbjct: 175 LGPALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLL 234

Query: 243 NRA---VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R    V V +LGG L + W      ++M G     ++G + +
Sbjct: 235 IREERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDGCIHL 277


>gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12]
          Length = 270

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 143/281 (50%), Gaps = 15/281 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +  F KM G+GN  +++D R  H ++T   I AL+        DQ++ +        D 
Sbjct: 1   MLTSFRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+R  N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDMGE
Sbjct: 61  FVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+W+ +PLA   D +                +P   SMGNPHA FFVED +      S
Sbjct: 121 PRLNWQDVPLAAEMDTLHL----------PLEGDPAAASMGNPHATFFVEDFVR----LS 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +      
Sbjct: 167 QGHALEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLI 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            R   V++ GG L IEW  NNHV MTG A   +EG +D+  
Sbjct: 227 GRVCEVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDLAA 267


>gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
 gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
          Length = 277

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC  ++        +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+  + DK+      I             V +G PH   F+ DD+   
Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDLDINGE----TVTVSSVLLGVPHTEVFI-DDITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS + S  
Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
 gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
          Length = 266

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 136/273 (49%), Gaps = 16/273 (5%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRII 67
            KM G+GN  +V+D R     +T      ++       FDQ+ ++    +   DA +   
Sbjct: 1   MKMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFY 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS   +CGN  RC+ R L     +      T RG L A++  +G  SV+MG P LDW
Sbjct: 58  NADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDW 117

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA   D ++                P    MGNPH  FFVE D     L  FG   
Sbjct: 118 QDIPLAEEADTLEL----------PIEGGPTATGMGNPHCTFFVE-DAEVIPLEEFGQRY 166

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP++ +  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T R V 
Sbjct: 167 EHHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQ 226

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + + GG L I+W ++  V+MTG     ++G L 
Sbjct: 227 IDLDGGTLWIDWAEDG-VWMTGPTMHVFDGTLT 258


>gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 276

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D 
Sbjct: 1   MLIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF  L   + R      T RG +  +   +  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F     ++ ++       +    VVSMGNPH +  V   +    +
Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-VVSMGNPHCVIEVPS-VADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+ V      
Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
 gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
          Length = 269

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 147/279 (52%), Gaps = 17/279 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
             V F KM G+GN  +++D R      +T+    AL+        DQ++L+     A  D
Sbjct: 1   MRVSFTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPSDSA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +RI N DG EV++CGN  R V       +  ++   ET  G++       G+  VDMG
Sbjct: 59  FRMRIFNADGGEVEACGNASRAVA-----LLHGEAANVETSGGVIAIAPASGGA-RVDMG 112

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  DW+ IPLA + D +        PV    L  P  V++GNPH +FFV DD     L 
Sbjct: 113 VPRFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFV-DDADAVPLD 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +   P+F E +N++IA +T  ++L L  WERGVGLT ACG+ ACA+ +A+     
Sbjct: 166 TMGPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGL 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           T R V+V + GG L IEW  ++H+ MTG A + + G  D
Sbjct: 226 TGRKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264


>gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
 gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
          Length = 276

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 133/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       +       G V          VSMGNPH++  V DD+    +
Sbjct: 121 GPPRFVPADIPFIADEQALSYPLEVDGQV-----HQIAAVSMGNPHSVLRV-DDVRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  V++ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276


>gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
 gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
          Length = 280

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 131/282 (46%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  + I+            +    +D       D ++ I        DA+
Sbjct: 1   MRFTKMQGAGNDYVYINCFAEQFPADPAEVARQMSDRHFGVGGDGVIYICPSNQ-GADAW 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVA----KENRDGSIS 117
           +R+ N DGSE + CGNG+RCV +F+     + +     +T  GIL      K  +   + 
Sbjct: 60  MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PI++   IP     +         G  +         VSMGNPH + FV +    
Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFEVT----SVSMGNPHCVVFVPEATDE 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  +   PMF   VN+    V S   L  RTWERG G T ACG+ A A  VA  
Sbjct: 176 L-VLGIGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
              +T R V++ +LGG L +EW++ +N ++ TG A + + G+
Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPAVEVFSGE 276


>gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101]
          Length = 395

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           + F+K +G+GN  L++D R   D      +T + +  L         D ++L     +  
Sbjct: 16  LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
            +  +RI N DG+E + CGNG+RC+ RFL  R      +++  +T+ G +V +   DG+I
Sbjct: 76  -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L    +P           +  +     +F        MGNPH +  V   + 
Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVFA--VAAAGMGNPHVVIPVP-LVE 191

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG LL  HP F    N+   +V S + L +R WERG G T ACG+ ACA++V+ 
Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             L   +R   + + GG L I W   +  VFM G A+  ++  +
Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAEHVFDAVI 295


>gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 269

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 28/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D  +   +N    A+   +       D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDG----SI 116
            + N DGS    CGNG+RCV ++          RK  T ET  GI       +      +
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQL 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P      IP          +   +    + F+     +SMGNPHA+ FV DD  
Sbjct: 119 TVDMGRPEQT-SEIP----------ESIEVDGKEYQFIG----ISMGNPHAVLFV-DDTA 162

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VAS
Sbjct: 163 AVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVAS 222

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
                T+  V V++LGG L IEW  + + V+MTG A + + G++ I 
Sbjct: 223 ILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269


>gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
 gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
          Length = 277

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 139/283 (49%), Gaps = 11/283 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID      +++ + +  L+        DQI+LI   +    D 
Sbjct: 1   MKLKFTKMHGLGNDFIVIDAVNQQISLSPEQLRRLADRHLGVGCDQILLIEKAE-GDADF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VR++       ++    ET+ G+++ +   DG ++V+M
Sbjct: 60  RYRIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D   IP         R   +   ++   +     VSMGNPHA+  V  DL +  +
Sbjct: 120 GVPKFDPVEIPFIAE----QRAPTYSLSLDDRQVE-ISSVSMGNPHAVQVVS-DLDNAPV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ KH  F + VN    +V     + LR +ERG G T ACG+ ACA+ VA     
Sbjct: 174 LTEGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGIQRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                V V    G L I W  +N  V+MTG A   ++G+++++
Sbjct: 234 LLESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276


>gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21]
 gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21]
          Length = 292

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 140/294 (47%), Gaps = 18/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQD 57
           + ++V F+KM G+GN  +VID        ++   +    +     +   D ++ +    +
Sbjct: 3   ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN---- 111
              D   RI N DGSE + CGNG+RC  +++     ++ K    ET+ GI   + +    
Sbjct: 63  EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              S SVDMG P      IP+    ++       +         N   V++GNPHA+ F 
Sbjct: 123 EVRSSSVDMGIPTFKSVEIPMKTEKEEFLDAELDVNGT----TVNLTAVNVGNPHAVIFT 178

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E+ +   DL   G  +  HP F E  N+    V +   +++ TWERG G T ACG+ A A
Sbjct: 179 EN-IEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTGATA 237

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
           SV+A   L K +  V V + GG LLI  ++      +FM GEA   ++G ++++
Sbjct: 238 SVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291


>gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
 gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
          Length = 286

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +V D RG         N   D     +       D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +K K +  ET  G+ +AK   D  
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIND-K 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP   + +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPT--TIEKKINSIPSHEFIEKNFKYIGYAVGMGNPHLIFFVQ-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AK+ + G +
Sbjct: 239 AYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283


>gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
 gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
          Length = 277

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC  ++        +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+  + DK+     ++             V +G PH   F+ DD+   
Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDLNVNGE----TVTVSSVLLGVPHTEVFI-DDITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS   S  
Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
 gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
          Length = 290

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 170/276 (61%), Gaps = 3/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +++    A++  +   +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +       +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V DD+  YDL  FG L
Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWV-DDIDAYDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +TNR V
Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L IEW + ++HV MTG A  E+EG  D 
Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFDP 283


>gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10]
 gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1]
          Length = 269

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 132/287 (45%), Gaps = 28/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D      +N    A+   +       D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKE----NRDGSI 116
            + N DGS    CGNG+RCV ++          RK  T ET  GI          +   +
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQL 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P      IP          +   +    + F+     +SMGNPHA+ FV DD  
Sbjct: 119 TVDMGRPEQT-SEIP----------ESIEVDGKEYQFIG----ISMGNPHAVLFV-DDTA 162

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VAS
Sbjct: 163 AVPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVAS 222

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
                T+  V V++LGG L IEW  + + V+MTG A + + G++ I 
Sbjct: 223 ILSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269


>gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
 gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
          Length = 290

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  +V+D      N+ S+ I A++        DQ++L+ +      D   RI N 
Sbjct: 1   MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV++CGNG RC V+F+  +    R     E   G +    N D +++VDMG P    
Sbjct: 61  DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120

Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             +       SF   ++ +    P+++  +    +VSM NPHA+  V  D+Y   ++S G
Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIVP-DVYTAPVSSQG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F+  +N    ++ S   ++LR +ERG G T ACG+ ACA+VV+         
Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V V M GG + I + D   V M G A   +EG +DI 
Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDID 276


>gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272]
          Length = 279

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 10/256 (3%)

Query: 30  ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF- 87
            + + I  L+       FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF 
Sbjct: 30  FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89

Query: 88  -LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
            L     ++     T  G +V     D  + V+MGEP  +   +P    F     ++ +I
Sbjct: 90  RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRANKAEKTYI 145

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                  +    VVSMGNPH +  V DD+    + + G +L  H  F E  N+   +V  
Sbjct: 146 MRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVK 203

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265
            E + LR +ERG G T ACGS ACA+V         +  V V++ GG L I W    H +
Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPL 263

Query: 266 FMTGEAKKEWEGKLDI 281
           +MTG A   ++G + +
Sbjct: 264 YMTGPAVHVYDGFIHL 279


>gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 279

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + I D  G + + +  A+           D +++I   + A  D  +
Sbjct: 1   MKFVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDG---SIS 117
           RIIN DGSE + CGNG+RC  +++     M +  FT ET+ GI+  K     DG    ++
Sbjct: 59  RIINADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG+P  + + IP+      +  +   +    +        + MG PH + +V+ D+  
Sbjct: 119 INMGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRIT----SLLMGVPHTMIYVK-DVEQ 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL   G     HP F +  N++  +     ++ + TWERG G T ACG+ +CA  V S 
Sbjct: 174 VDLPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSF 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
               T R V V++  G L I++ + + +V+MTG A   + G+ +
Sbjct: 234 LNGFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSYTGEWE 277


>gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619]
 gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619]
          Length = 276

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDM
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      IP       ++      G      L +   VSMGNPHA+  V DD+    +
Sbjct: 121 GPPRFIPAEIPFVADEQALNYPLEVDGE-----LHSIAAVSMGNPHAVLRV-DDIRTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HGLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276


>gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
 gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
          Length = 281

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 139/289 (48%), Gaps = 19/289 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D                ST       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTQYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGI-----LVAKENRDG 114
             +RI N DGSE   CGN  RC+ ++L      K+   T +T+ GI      VA + +  
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVN 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVED 173
           +++VDMG P  +        ++D          P+     R     VSMGNPH + FV +
Sbjct: 120 TVTVDMGIPADEP------VNYDGNGAKPMKEQPILIEGKRYVGTTVSMGNPHIVIFV-N 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   DLA+ G  +  HP+F   +N+  A+V     + +R WERG G+T ACG+ ACA+ 
Sbjct: 173 DITDTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATA 232

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           VA+    +  R   + M GG + I+W   + HV MTG A K +EG++++
Sbjct: 233 VAAFLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281


>gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
 gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
          Length = 282

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 144/282 (51%), Gaps = 7/282 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN  +VID    H +  +  I           FDQ++L+        + 
Sbjct: 2   AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +   + +     T +G++V     +G ++VDM
Sbjct: 62  GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L    IP + +  +     +H   ++    R    V+MGNPHA+  V DD++   +
Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASARF-SCVNMGNPHAVLVV-DDVHCAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  L +HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ VA     
Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              R   V V + GG L IEW  +NHV M+G A   +EG + 
Sbjct: 240 LLARQGAVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTVT 281


>gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
 gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
          Length = 267

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 96/273 (35%), Positives = 137/273 (50%), Gaps = 16/273 (5%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67
            KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA +   
Sbjct: 1   MKMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFY 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MGEP LDW
Sbjct: 58  NADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDW 117

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA   D ++                P    MGNPH  FFV D+     LA FG   
Sbjct: 118 QDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFV-DNAEVIPLAEFGARY 166

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T+R V 
Sbjct: 167 EHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQ 226

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + + GG L I+W  +  V+MTG      +G   
Sbjct: 227 IDLDGGTLWIDWRKDG-VWMTGPTMHVADGHFT 258


>gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
 gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
          Length = 275

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 137/279 (49%), Gaps = 9/279 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62
            ++ F+KM G+GN  +VID    +  +  + I           FDQ++L+    D  +D 
Sbjct: 1   MLLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++V+M
Sbjct: 61  HYRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP+ +   +P      +     + +   +   L     +  GNPH +    DD+    +
Sbjct: 121 GEPMFEPASVPFKAQKPE---HTYVLRVADETVLCGVMGL--GNPHCVIET-DDVNTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           AS G  +A+H  F E VN+   ++ S + + LR +ERGVG T ACGS ACA+ V      
Sbjct: 175 ASLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQD 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           K  R V V + GG L I W     V MTG A   ++G++
Sbjct: 235 KLERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQM 273


>gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 294

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 150/290 (51%), Positives = 197/290 (67%), Gaps = 1/290 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S   FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD + +    
Sbjct: 2   ASTAPFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DG+  Q+CGNGMRCVV+ L +   +K FTFET+ GIL A+E+ DGSISVDMG 
Sbjct: 62  FIDILNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGT 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V++D++ Y+L  
Sbjct: 122 PRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+   ++T
Sbjct: 182 FGPLLENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRT 241

Query: 243 NRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R+VS+    GG L +EW D++HV +TG A+ E+ G  D   G W +  E
Sbjct: 242 GRSVSLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTE 291


>gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 271

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G+GN  +V+D       +T  A+  L+        DQ++L+     + +D   RI N 
Sbjct: 1   MQGLGNDFVVLDGVRQSIELTESAVRQLADRHFGIGCDQLLLVEKSDRSDIDFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC VRF+  +    +     ET +GI++ +   +G ++VDMG P+ D 
Sbjct: 61  DGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPVFDP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +       G V  +       +SMGNPHA+  VE+ +    + + G L+
Sbjct: 121 SEIPFDSDQPALTYPLDLDGNVVEI-----SAISMGNPHAVQVVEN-IETAPVETQGPLI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F   VN    +V     + LR +ERG G T ACG+ ACA+ VA       +  V+
Sbjct: 175 EHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDHTVT 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V   GG L+I+W    H V MTG A   + G++++
Sbjct: 235 VSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIEL 269


>gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 277

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 19/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM GIGN  + ++   C   +  D +               D ++LI   + A  D
Sbjct: 1   MKFTKMHGIGNDYVYVN---CFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--D 55

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGS 115
             +RI N DGSE Q CGNG+RCV +++     +++   T ET+ GI   +      R  S
Sbjct: 56  CKMRIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCS 115

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+MG P L    IP+  +  ++  +   +   N         VSMGNPH + FV DDL
Sbjct: 116 ARVNMGRPKLMRPEIPMVGAETQVVDEMLVL---NENTSFRVTCVSMGNPHCVIFV-DDL 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G  +  H +F E  N+   +V     + + TWERG G+T ACG+ A A  VA
Sbjct: 172 KQLHIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVA 231

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               + T R +   + GG L +EW ++ +V+MTG A + + G+
Sbjct: 232 GVLNNLTERKLLAHLPGGDLELEWVEDENVYMTGAAAEVFTGE 274


>gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
 gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
          Length = 293

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 14/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDF-QDASVDA 62
           + F KM GIGN  + I        D+ ++ A+           D ++L+      +  DA
Sbjct: 3   LRFVKMHGIGNDYIYISGFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEADA 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETI-RGILVAKENRD------ 113
            +R+ N DGSE   CGNG+RCV +FL     ++      +T   G+L      D      
Sbjct: 63  VMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDRV 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + V+MG PIL    IP     D        +             VSMGNPH + FVE 
Sbjct: 123 RRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE- 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   DL   G LL +H  F + VN+ +A+V + +   +RTWERG G+T ACG+ ACA +
Sbjct: 182 DVASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAVL 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
           VA     +T RA  + + GG L +EW  D   V MTG A   +EG  D
Sbjct: 242 VAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289


>gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565]
 gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565]
          Length = 276

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D 
Sbjct: 1   MLIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF  L   + R      T RG +V +   +  ++V+M
Sbjct: 61  HYRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   IP    F     ++ ++       +    VVSMGNPH +  V   +    +
Sbjct: 121 GVPQFEPGKIP----FRAQKAEKTYLLRAQEHTVMCG-VVSMGNPHCVIEVPS-VADAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ +H  F E VN+    + +   + LR +ERG G T ACG+ ACA+ V      
Sbjct: 175 ETLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           K    V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 235 KLKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276


>gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
          Length = 279

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 16/282 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F KMEGIGN  +  D            I  +S        D +++I   +  + D  
Sbjct: 1   MLKFLKMEGIGNDYVYFDGINQDVPTDETFIKKVSNRHIGIGSDGVIIILPSE--TCDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS--- 117
           +R+ N DGSE + CGNG+RC  +F+  +    + +   ET+ GI   + N  DG ++   
Sbjct: 59  MRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVTSVC 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPI     IP+  S  +M      I    +        VSMGNPH I +V  D   
Sbjct: 119 VDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTY----YCTAVSMGNPHVIQYV--DTLD 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+ + G       +F E VN    +V   E L +R WERG G T ACG+ ACA + AS 
Sbjct: 173 FDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMYASY 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +K +  V V++LGG L IE  D   +FMTG A+  +EG L
Sbjct: 233 LNNKCDEKVDVELLGGHLQIELRDKK-IFMTGPARTTFEGTL 273


>gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens]
 gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 276

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+M
Sbjct: 61  RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP       +       G    L       VSMGNPHA+  V  D+    +
Sbjct: 121 GAPRLVPADIPFQAPAQALSYQVDVDGATVEL-----AAVSMGNPHAVLRVA-DINSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
 gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
          Length = 277

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 99/280 (35%), Positives = 136/280 (48%), Gaps = 15/280 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V D R     IT      ++        DQ+ LI    +   DA
Sbjct: 7   TGLPFMKMHGLGNDFVVFDGRARDIAITPALARLVADRHRGIGCDQLALITA--EGPGDA 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R L   + R +    T RG L A++   G  SV+MG 
Sbjct: 65  HLTFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGA 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  IPLA + D ++                P    MGNPH  FFVE D     LA 
Sbjct: 125 PQLDWAEIPLAEAMDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAERVALAE 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP+F E  N+ +A +   + L +R WERGVG T A GS++CA+ VA+     T
Sbjct: 174 FGPRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLT 233

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            R V++ + GG L I+W ++  V+MTG      +G L   
Sbjct: 234 GRCVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVLTPD 272


>gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
 gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
          Length = 283

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F K EG+GN  ++ID R   + +    +A            D ++ +    +   D
Sbjct: 6   GTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLL-SAETGAD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISV 118
             +RI N DGSE Q CGNG+RC+  F            +  ET  G+L      DG + V
Sbjct: 65  FRMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRV 124

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P L    IP  LA +  K       +G V+         V+MGNPHA+ FV D+L 
Sbjct: 125 DMGPPHLLADEIPTTLAPADQKAVAASIPVGGVDWRVT----CVNMGNPHAVVFV-DELA 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG L  +   F E VN   A V S   L ++ WERG G T ACG+ ACA +VA+
Sbjct: 180 TVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAA 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                ++   +V++ GG + I W    NH+ MTG A+K + G L
Sbjct: 240 VLNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSGLL 283


>gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 276

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 134/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP      + D     +             VSMGNPHA+  V DD+    +
Sbjct: 121 GAPRLVPADIPFQAPA-QADSYTLDVDGRQVQL----AAVSMGNPHAVLRV-DDINSAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V   +   LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR]
 gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR]
          Length = 275

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 142/279 (50%), Gaps = 9/279 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F+KM G+GN  +V+D    +  +  D I   +       FDQ++L+    D  +D 
Sbjct: 1   MLLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++VDM
Sbjct: 61  HYRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP+ +   +P    F     ++ ++  V    +    V+ +GNPH +  V D++    +
Sbjct: 121 GEPLFEPAAVP----FKAQKAEQTYVLRVKEETVLCG-VLGLGNPHCVIAV-DNVDTTPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  LA H  F E VN+   +  S + + LR +ERGVG T ACGS ACA+ VA     
Sbjct: 175 ETLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             N  V V + GG L+I W     V MTG A+  ++G++
Sbjct: 235 LLNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273


>gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
 gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
          Length = 281

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 136/287 (47%), Gaps = 17/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+GIGN  + I+         S     +S        D ++L+     A  D 
Sbjct: 1   MQLHFYKMQGIGNDYVYINAMETKVPNPSALSKTVSDRHFGIGSDGLILLLPSTVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRDGSI 116
            +++ N DGSE + CGNG+RCV +        K +S T ET+ GI    L  ++ +  S+
Sbjct: 59  RMQMFNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P ++ + IP+  +  +M      +    +        VSMGNPHA+ F  D + 
Sbjct: 119 CVDMGSPSMEIEKIPVRYTERRMVEAPLTVNGTTYSVT----CVSMGNPHAVIFT-DGID 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +L   G     H +F E VN           L +R WERG G T ACG+ ACA VVA+
Sbjct: 174 EMELEKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAA 233

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +      V V + GG L I W DN+ V+MTG A+  + G ++I
Sbjct: 234 CLTKRCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279


>gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
 gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
          Length = 288

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V D       +T +    ++        DQI+++       VD 
Sbjct: 12  TRLRFTKMHGLGNDFVVFDGVNQTVTLTPERCRRIADRHFGVGCDQILVVEKPTRPDVDF 71

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VRF+       + +   ET  G++  +   DG ++VDM
Sbjct: 72  RYRIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDM 131

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P      +P     + +      IG        +  VVSMGNPHA+  V +DL    +
Sbjct: 132 GAPRFAPAEVPFVAEAEALTY-PLKIG----QHRLDIAVVSMGNPHAVLRV-NDLDSAPV 185

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  H  F + VN    +V +   + LR +ERG G T ACG+ ACA+ V+     
Sbjct: 186 DILGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVSGIRQG 245

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                VSV   GG L+IEW      V MTG A+  +EG+L++
Sbjct: 246 ALASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287


>gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G]
          Length = 279

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 120/256 (46%), Gaps = 10/256 (3%)

Query: 30  ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF- 87
            + + I  L+       FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF 
Sbjct: 30  FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89

Query: 88  -LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
            L     ++     T  G +V     D  + V+MGEP  +   +P    F     ++ +I
Sbjct: 90  RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRANKAEKTYI 145

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                  +    VVSMGNPH +  V DD+    + + G +L  H  F E  N+   +V  
Sbjct: 146 MRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVETLGPVLESHERFPERANIGFMQVVK 203

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265
            E + LR +ERG G T ACGS ACA+V            V V++ GG L I W    H +
Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPL 263

Query: 266 FMTGEAKKEWEGKLDI 281
           +MTG A   ++G + +
Sbjct: 264 YMTGPAVHVYDGFIHL 279


>gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
 gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
          Length = 284

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDA---INALSTDDNTHFDQIMLIHDFQD 57
           +++ F K  G+GN  ++ID R        ++++    I+          D I+LI     
Sbjct: 2   TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILPP-V 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDG 114
           A  D  ++I N DGSE + CGNG+RC++R++    +     SF  ET+ G +      +G
Sbjct: 61  AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAGKIQINI-EEG 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +I VDMG PI   + IP     ++    +  I  ++  FL      SMGNPHAI  V   
Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFL--VSACSMGNPHAIIEVP-T 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  L  +G  L  HP+F +  N+   +V S   +++  WERG G T ACG+ ACA + 
Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               L K N  + VK+ GG L I W      +FM G+AK  + G  +I
Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284


>gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
 gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
          Length = 261

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 91/267 (34%), Positives = 132/267 (49%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + D I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+       + S +  T +G ++ K   D  I+V+MGEP+ +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEPVFEPNKIP---- 116

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F     ++ ++  V+   L +   VSMGNPH    V DD+  YD+  +G L+  H  F E
Sbjct: 117 FKATQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKYGPLVESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    ++ S   + LR +ERG G T ACGS AC +V            V V + GG L
Sbjct: 175 RVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLGEEVKVSLPGGDL 234

Query: 256 LIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            I W  +   +FMTG A   ++G+L I
Sbjct: 235 YIVWQGSGKPLFMTGPATHVYDGQLSI 261


>gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
 gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
          Length = 291

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/277 (45%), Positives = 172/277 (62%), Gaps = 4/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRI 66
           FAKM GIGN+I+V+DMR     +T D   A+++      +DQ+M++   +    +AFI I
Sbjct: 9   FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPIL 125
            N DGSE  +CGNGMRCVVR +  +  + + TFET  G+L A +       +VDMG P  
Sbjct: 69  YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP+++  L +P VVSMGNPHAIF+V DD+  YDLA FG 
Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWV-DDVNAYDLARFGP 187

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R 
Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V + + GG L IEW + ++HV MTG A  E+EG  D 
Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFDP 284


>gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 269

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 147/277 (53%), Gaps = 16/277 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID R     +++    AL+        DQ++L+   + A  D 
Sbjct: 1   MRIPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DG EV++CGN  R V  +L           ET+ GI+ A  +  G ISV MG 
Sbjct: 59  RMRIFNPDGGEVEACGNASRAVGLYLGGDK-----RIETLGGIIAASTSDTG-ISVAMGR 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W  IPLA   D +        PV    L  P  V++GNPH IFFV D  +  DLA 
Sbjct: 113 PRFGWDEIPLAYPMDTLTM------PVGWEDLVEPVAVNVGNPHVIFFVPDT-HSVDLAR 165

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+   P+F   +N+++A +T  ++LDLR WER  GLT ACG+ ACAS +A+     T
Sbjct: 166 LGPLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLT 225

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R V+V + GG L+IEW D + + MTG A   +EG  
Sbjct: 226 GRRVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262


>gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191]
 gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191]
          Length = 274

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 8/277 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G+GN  ++ID      D + +              D ++ +     AS D  I
Sbjct: 1   MEFVKYQGLGNDFILIDCVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPS--ASADYKI 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123
           RIIN DG+E + CGNG+RC +RF+   +K ++  TFET+ G +  +   +  + VDMG P
Sbjct: 59  RIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMGAP 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L    IPL  S          +             VSMGNPH + FVE D+   D+A  
Sbjct: 119 KLTAAQIPLNISDSDGRAVDIPVKLEGGKI--KGTGVSMGNPHFVIFVE-DIKKTDVAKT 175

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  +  F +  N+   +V +   L ++ WERGVG+T ACG+ ACAS+VA    +KT 
Sbjct: 176 GKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTE 235

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           R   V++ GG L +EW D+   VFMTG A + + G  
Sbjct: 236 RLALVELDGGQLTVEWPDDGASVFMTGPATEVFSGVF 272


>gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
 gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
          Length = 277

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSD--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGNG+RC  ++      + +++FT ET+ GI+      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K +P+    DK+      +             V +G PH   +VE D+   
Sbjct: 119 DMGKPFFNSKDVPMNVDMDKVIDVDIDVNGE----TVTVSSVLLGVPHTEVYVE-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
 gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
          Length = 279

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 136/280 (48%), Gaps = 15/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +++D       +  + A+           D +M++   + A  D  +
Sbjct: 1   MEFTKWQGCGNDFVIVDFLDREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE----NRDGSISV 118
           R  N DG+E + CGNG+RC  R L    R++R+ FT ETI G +V +         ++ V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTAVEV 118

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP+L    IP+     + +      +    +        VSMGNPH + FV DD   
Sbjct: 119 DMGEPVLAGDAIPVRGFGMEPVIAQPITVEDRTYA----MTCVSMGNPHCVIFV-DDAEG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     HP F   +N     V   +   +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                +RA  +++ GG + + WH + H+FMTG A+  + G
Sbjct: 234 LCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAG 273


>gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
 gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
          Length = 277

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +V++      +  + A N          D ++ +     A  D  +R
Sbjct: 1   MKFVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRA--DVQMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           I N DGSE + CGN +RCV ++   R  ++R+    ET+ G+       +GS    ++VD
Sbjct: 59  IFNADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL+   IP+A +       R         F      VSMGNPHA+ FV DD+   D
Sbjct: 119 MGEPILEPGRIPVALAEGGTPSGRVEAAGREWAFT----AVSMGNPHAVIFV-DDVEGTD 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +  + +F   VN+          + +R WERG G T ACG+ ACA+VVA    
Sbjct: 174 VRGVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALE 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ++ R V V + GG L IEW ++  V+MTG A + + G++
Sbjct: 234 GRSGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273


>gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
 gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
          Length = 290

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 18/294 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           M +  + F KM  +GN  ++ID        +    + +  +  D N       +I   + 
Sbjct: 1   MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKIC-DRNFGVGGDGVIFVSKS 59

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KEN 111
            ++D   RI N DGSE + CGNG+RC  +++  +   ++K    ET+ G  +     K N
Sbjct: 60  DNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKNN 119

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              SI VDMG      + IP+             +             V++GNPH + FV
Sbjct: 120 LVESIKVDMGLATFKSEKIPVKTKDKTFINKVCKLNDKKIKL----SAVNVGNPHTVIFV 175

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D++        G ++  HP+F E  N++  +V +   + + TWERGVG+T ACG+ A A
Sbjct: 176 -DEVSRDYAEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGAVA 234

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
           S +    L K N+ V+V + GG L IE ++ N+    FM G+A   +EG L + 
Sbjct: 235 STIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGILSMP 288


>gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
 gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
          Length = 285

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 128/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV   L          +  + T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
           A  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282


>gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
 gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
          Length = 300

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/297 (48%), Positives = 192/297 (64%), Gaps = 4/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +  V+FAKM G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   ADTVEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+NCDG++ Q+CGNG RCVV+ L+S   + +FTF+T+ GIL A E+ DG ISVDMG 
Sbjct: 62  FIDILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGL 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  
Sbjct: 122 PRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACA+ V++    +T
Sbjct: 182 FGPLLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRT 241

Query: 243 NRAVSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW ++NHV MTG A+ EW G +D  +G + +    ++ 
Sbjct: 242 GRKVTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSRDAVAEQG 298


>gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2]
          Length = 274

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/275 (32%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + ++ I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC  RF+  R    + S T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP          +  +   + +    +  VV+MGNPHA+  V  D+   D+A  G  +
Sbjct: 121 NEIPFVAEQP----EALYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 279

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K  G+GN +++I  R  +  + S    +           D ++        + D  
Sbjct: 3   IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPG-IGNTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI+N DGSE Q CGNG+RC+ R +          K+++  T  G++  +   +G + VD
Sbjct: 62  MRILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L    + +      +       L     VSMGNPH I FVE D   
Sbjct: 122 MGTPYLFAHEIPTTLGNPNETVINKPLAVAGK----LWLVTCVSMGNPHCITFVE-DASA 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DLA  G     H MF E +N     V   + L +R WERG G T ACG+ ACASVVA  
Sbjct: 177 IDLAVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                 R  +V++ GG L+IEW + +N ++MTG+A+  + G  
Sbjct: 237 LTENCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGSY 279


>gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
 gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
          Length = 266

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
             ++F KM+G GN  + ++          +   A S        D ++LI        D 
Sbjct: 1   MKIEFTKMQGAGNDYIYVNTLIYPLPNPEELAVAWSRPHTGIGSDGLVLIG--SSGKADF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE + CGN  RC+ +++      ++   T +T+ GI    L  ++ +  ++
Sbjct: 59  SMRIFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P    ++ P+                      R    VSMGNPH + FV DD+ 
Sbjct: 119 TVDMGIPA---EIHPVDLG--------------EGYPYREGIAVSMGNPHLVIFV-DDME 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G +L +HP+F + VN+  A+V +   + +R WERG G+T ACG+ ACA+ VAS
Sbjct: 161 QVDLPRVGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVAS 220

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              H+      + M GG L I W  +   +FMTG A+K ++G + +
Sbjct: 221 AYTHRCPGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266


>gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42]
 gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42]
          Length = 301

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  ++  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
            R V + +        L IEW + ++HV MTG A+ EW G+LD  TG W + +  +
Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDDARE 297


>gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
 gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
          Length = 276

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 131/282 (46%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+M
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP       +       G        +   VSMGNPHA+  V  D+    +
Sbjct: 121 GAPRLVPADIPFQAPEQALSYQVDVDG-----TPVDLAAVSMGNPHAVLRVS-DINTAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+    
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQG 234

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 235 WMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276


>gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
 gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
          Length = 299

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 147/297 (49%), Positives = 192/297 (64%), Gaps = 4/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +  V+FAKM G+ NKILV+DMRG  D +T  A  AL+++  T FDQIM IHD +    DA
Sbjct: 2   ADTVEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+NCDG++ Q+CGNG RCVV+ L+S   + SFTF+T+ GIL A E+ DG ISVDMG 
Sbjct: 62  FIDILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGL 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  
Sbjct: 122 PRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACAS V++    +T
Sbjct: 182 FGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRT 241

Query: 243 NRAVSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L I+W ++NHV MTG A+ EW G +D  TG W +   +  A
Sbjct: 242 GRKVTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWARDAVERGA 298


>gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 286

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 146/285 (51%), Gaps = 11/285 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F+KM G+GN  ++I+ M      +TS+ I  LS       FDQ++L+ + ++ +
Sbjct: 8   KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N +G+EV  CGNG RC   F  L    K+++    T    L+     +G++ 
Sbjct: 68  IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P    K I      + ++     I  VN +   N  +VS+GNPH I +V ++L  
Sbjct: 128 VDMGVPCFKLKNI---FGENIIENSLHSIKFVNKII--NYDLVSIGNPHCIIYV-NNLKK 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  L+ H +F EG+N++   V S   + LR +ERGVG T ACGS ACASV    
Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                   V V +L G L I W   +  ++MTG A   ++G   +
Sbjct: 242 QQGLLFNEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDGYFYL 286


>gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
 gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
          Length = 286

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 144/285 (50%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +VID RG         N   D     +       D ++ I + ++ +
Sbjct: 4   ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L     M  K+     ET  G+ +AK   D  
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP   + +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILECQNIPT--TIEKKINSIPSHEFIEKDFNNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +L K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283


>gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
 gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
          Length = 284

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/276 (36%), Positives = 142/276 (51%), Gaps = 16/276 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G+GN  +V+D R  H    +D I A++       +DQ+ +I     A  DA
Sbjct: 21  SRLPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGA--ADADA 78

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS+  +CGN  RC+   L     R      T RG L A+ +  G ++V+MG 
Sbjct: 79  RLTFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAAERHG-GVVAVNMGA 137

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  DW+ +PLAR  D +                +P    MGNPH  FFVE D    DLAS
Sbjct: 138 PSTDWQGVPLAREVDTLHL----------PIPGDPVATGMGNPHCTFFVE-DAESVDLAS 186

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP+F E  N+ +A+V     + +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 187 FGAEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRGLT 246

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            R V+V + GG L I+W D+  V+M G     ++G 
Sbjct: 247 ERRVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDGV 281


>gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1222

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 26/292 (8%)

Query: 1    MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59
            M ++ + FAKM G+GN  +V+D           +              +++I     +  
Sbjct: 948  MAATTIRFAKMHGLGNDFVVVDSVRQSLPPLGSSW-------------LLVIEPPPASGP 994

Query: 60   ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRD 113
               +D   RI N DGSEV  CGNG RC+  ++               T    L      D
Sbjct: 995  ELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTPD 1054

Query: 114  GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            G+I+V+MG P  D   +PL         D +H+   +   +     VSMGNPH +  V D
Sbjct: 1055 GAITVNMGCPKFDPAQVPLLAPARA---DVYHLALESGATICCG-AVSMGNPHLVTLV-D 1109

Query: 174  DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            D+    +   G  L  H    E  N+   ++    S+ LR +ERG G T ACGS ACA+V
Sbjct: 1110 DVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRACGSGACAAV 1169

Query: 234  VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
                   +    V+V + GG L I W   +  ++MTG A   +EG L     
Sbjct: 1170 AVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEGLLPWPAN 1221


>gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
 gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 138/284 (48%), Gaps = 12/284 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           +   +   KM G+GN  L +D         D++ + A      +     D ++L+   +D
Sbjct: 4   ERRPIRLTKMHGLGNNYLFLDGLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPPRD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG- 114
                 +RI N DGSE + CGNG+RC+ R +  R   +   F  ET  G +  + + DG 
Sbjct: 64  PGARFRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLDGH 123

Query: 115 ---SISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
               ++VDMG P L+  +IP+A    ++       +       +     +SMGNPH + F
Sbjct: 124 RVTGVTVDMGVPRLERGMIPMAGPAGEQAVEVPLEVEAGGERSVFTVTALSMGNPHCVVF 183

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DDL   DL   G     HP F + VN    RV + E + +R WERG G T ACG+ AC
Sbjct: 184 V-DDLEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVWERGSGPTLACGTGAC 242

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           A  VA     +T R V+V++ GG L +EW  + HV+MTG A   
Sbjct: 243 AVAVAGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPAAYI 286


>gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000]
 gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 292

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 135/289 (46%), Gaps = 9/289 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      + T +   A++        DQ++L+       VD 
Sbjct: 1   MKLHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDM
Sbjct: 61  RYRIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDM 120

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G P+ +   +P    A       RD  H   +N         VSMGNPHA+  V DD   
Sbjct: 121 GAPVFEAARLPFVPDALPTRVEGRDTQHALQINGR-TAWLSTVSMGNPHAVQVV-DDAEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+ VA  
Sbjct: 179 FPVREDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAGI 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
                +  V V   GG L I W  +   V MTG A   +EG LD+   K
Sbjct: 239 RRGLLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
 gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
          Length = 285

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV   L          +  + T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282


>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
            L2-63]
          Length = 1350

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 147/292 (50%), Gaps = 20/292 (6%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
            +  M+ F KM+GIGN  +          N  + A+           D I+L+   + A  
Sbjct: 1067 EKLMLKFTKMQGIGNDYIYCSTFDQEISNPEALAVRLSDRHFGIGGDGIILVCPSKVA-- 1124

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK----EN 111
            DA +++ N DGSE + CGNG+RCV +FL         ++   T ET+ GI   K      
Sbjct: 1125 DAKMKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGG 1184

Query: 112  RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            +   + VDMG+ ILD K IP+A   DK+      I   N+    N   VSMGNPH + F+
Sbjct: 1185 KVNRLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFM 1240

Query: 172  EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DD+ + D+ + G       +F E VN     V    ++ +R WERG G T ACG+ ACA
Sbjct: 1241 -DDIDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACA 1299

Query: 232  SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              VA+      K    + +K+ GG L+I +  +  V+MTG A+K +EG++++
Sbjct: 1300 VAVAACENGFCKKGEDIKIKLKGGDLIINYT-DETVYMTGNAEKVFEGEVEV 1350


>gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2]
          Length = 274

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + +  I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC  RF+  R    + + T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      K      +   + +    +  VV+MGNPHA+  V  D+   D+A  G  +
Sbjct: 121 NEIPFVAEEPKA----LYTLELANDQNISIDVVNMGNPHAVTIVP-DVLTADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001]
 gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001]
          Length = 296

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 131/286 (45%), Positives = 167/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +      A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV   L          +    T ET  G++  K   D S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   +DL
Sbjct: 128 GQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG L  D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSLSPDLFAG 293


>gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora]
 gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora]
          Length = 376

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 145/289 (50%), Gaps = 16/289 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K  G+GN  L+ID R    N        + +  L         D +++I      
Sbjct: 1   MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLCDRHFGVGADGVIIILSPTLE 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E Q CGNG+RC+ +FL    K      +  ET+ GI+V++   +  
Sbjct: 61  G-DWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKENDM 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174
           I VDMG PIL    IP   S   + +D   IG +  +    +     MGNPH +  V+ D
Sbjct: 120 IYVDMGIPILSPHDIPTRLS---VGQDNIAIGLIETNGITWSVAAAGMGNPHIVIPVK-D 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               D+  FG LL +H  F    N+   +V     L LRTWERGVG+T ACG+ ACA+++
Sbjct: 176 AEDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACAALI 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            +  L  +++   + + GG LL+ W   +NH+ + G AK  ++G L  +
Sbjct: 236 VAHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVLTPE 284


>gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
 gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
          Length = 286

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K +G GN  ++ID RG         N   D     +       D ++ I +  + +
Sbjct: 4   ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L     M  ++     ET  G+ +AK   D  
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP   + +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILEGQNIPT--TIEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W +++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283


>gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
 gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
          Length = 268

 Score =  312 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 99/275 (36%), Positives = 139/275 (50%), Gaps = 16/275 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +VID R     +T    +A++        DQ++L+     A  D  +R
Sbjct: 4   RFTKMHGLGNDFVVIDARVAPVEMTPARAHAIADRRHGIGCDQLILLEPSTSA--DVKMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG EV++CGN  RCV   +      K    ET+ G+L      DG   V +GEP+ 
Sbjct: 62  IFNADGGEVEACGNATRCVATLI-----GKPAVIETLAGMLRVT-PADGGAEVTLGEPVF 115

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA   D  D       PV    L +   V++GNPH +FFV  +     L   G 
Sbjct: 116 DWDHIPLAMPMDTRDM------PVAWDELEHGAAVNVGNPHIVFFVP-EADAVALDQLGP 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E VN+++A +     L LR WERGVGLT ACG+ ACA+ VA+         
Sbjct: 169 RIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVRSP 228

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           V+V + GG L+I W     + M+G A + ++G+ D
Sbjct: 229 VTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263


>gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
 gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
          Length = 317

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 110/275 (40%), Positives = 154/275 (56%), Gaps = 6/275 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+ILV+D+R   +++ + A  AL+      FDQ M+++  + A   AF+RI
Sbjct: 40  PFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRI 99

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGSE  +CGNG RC+  +   R+  +   FE+  G+L      DG ++VDMG P L 
Sbjct: 100 LNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLG 159

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLAR        +          L    +VSMGNPHA+FFV  D    D+ + G  
Sbjct: 160 WDAIPLARPVADTSAVQIE----GFASLGPASMVSMGNPHAVFFVP-DANAVDVEALGAT 214

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A+V S + + L  WERG G T ACG+AACA+ V++    +T R V
Sbjct: 215 LEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTGRKV 274

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            V + GG L+I+W   + HV MTG    E+ G L 
Sbjct: 275 RVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTLT 309


>gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
 gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
          Length = 278

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 104/276 (37%), Positives = 147/276 (53%), Gaps = 18/276 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID RG    +T     AL        FDQ+  I D    + D  +  
Sbjct: 12  FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIRDG--VTSDVILDF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RCV  FL  +      +  T RG+L AK + D  +S++MG P LD
Sbjct: 70  WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKWSGD-LVSINMGLPQLD 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFL-RNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           W+ +PLAR             PV+HL +  +P  V MGNPH +FFV DD+   D A  G 
Sbjct: 129 WQDVPLARDV-----------PVDHLPIDGDPVAVGMGNPHCVFFV-DDIADVDPAIAGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H +F E  N+  A+V S + + +R WERG G+T ACGS ACA+ VA+     T++ 
Sbjct: 177 PIENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKC 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           V +++ GG L ++W D+  V+MTG     ++ +L  
Sbjct: 237 VRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARLTP 271


>gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 277

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
          Length = 274

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++S   F KM G+GN  +++D R    ++T   I ALS        DQ +++       
Sbjct: 1   MKTS---FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDG 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D F+R  N DG+E  +CGN  RCV   +       +   +T  G+L  +   DG I+VD
Sbjct: 58  ADVFVRFFNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P LDW+ IPL R  D +    +           +P   SMGNPHA  F+ D     D
Sbjct: 118 MGPPALDWRDIPLVREVDTLHLPLW----------GDPAAASMGNPHATVFL-DVGDTTD 166

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G  +   P+F E  N+  A+V + + + LR WERG GLT ACGS ACA+VV +   
Sbjct: 167 PRVRGPAMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVRR 226

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
               R   V+M GG L + W + + HV M+G A   +EG + + T
Sbjct: 227 GLVGRTCVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271


>gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
 gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 148/294 (50%), Positives = 196/294 (66%), Gaps = 5/294 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I I+N DG++ Q+CGNG RCVV+ L +   +K FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P V+SMGNPHAIF+V+ D   YDLA 
Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+V S   L  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            R V++ +      G L IEW + ++HV MTG A+ EW G +D  TG + +  E
Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQE 295


>gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 286

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 16/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K  G GN  ++ID R  +       +   D  N          D ++ I +    +
Sbjct: 4   IIFEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILEPDRNN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V++L +  K       +  ET  GI +A+ N +G 
Sbjct: 64  Y-AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGE 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG+PIL+ K IP     D               F +  + V MGNPH IFF++ D+
Sbjct: 122 ITVKMGKPILETKSIPTK--IDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQ-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +  KH +F E  N+  +++ + +++++R WERG G T ACG+ ACA  VA
Sbjct: 179 TKISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           +  L   N    + + GG L+I W    + + MTG AKK + G   +K
Sbjct: 239 AYKLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286


>gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 274

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 148/282 (52%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+ R  + + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEARE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FV+  L    
Sbjct: 118 MGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVKS-LDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274


>gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
 gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
          Length = 277

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri]
 gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri]
          Length = 327

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 135/293 (46%), Gaps = 19/293 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDA-SVDAF 63
           +FAK +G+GN  ++ID R      +T++    +         D ++     +     D  
Sbjct: 36  EFAKYQGLGNDFVLIDNRASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPGTDEDYS 95

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +R+ N DGSE + CGNG+RC+ RF+        + +   T+ G++  +   DG ++VDMG
Sbjct: 96  MRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRKYKVWTLAGLIQPELRADGQVAVDMG 155

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-------- 173
           +P+L+   +P   +  K          ++         VSMGNPH + F           
Sbjct: 156 KPVLEPANVPTKLAATKDSAAVRCEMDIDGE-KWLVTAVSMGNPHCVTFGRAGDGELGAD 214

Query: 174 ----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +  + L+++G     H  F    N     V +   + +  WERG G T ACG+ A
Sbjct: 215 GPGLKVEDFALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVWERGAGATLACGTGA 274

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA+VVA     + +R   V++ GG L I W + + +V MTG A+  + G + +
Sbjct: 275 CATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPVFTGVITV 327


>gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens]
 gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens]
          Length = 277

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
 gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
          Length = 286

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +VID RG         N   D     +       D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L     M  K+     ET  G+ +AK   D  
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +           +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPTK--IENKINSIPSHEFIQKNFKYIGYAVGMGNPHLIFFVQ-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +   + +F E  N+   ++ + +++ ++ WERGVG T ACG+ ACA  VA
Sbjct: 179 LSIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AK+ + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283


>gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
 gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
          Length = 286

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 142/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC------HDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           ++F K +G GN  +VID RG         N   D     +       D ++ I +  + +
Sbjct: 4   INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSF--TFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L     M  K+     ET  G+ +AK   D  
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIND-E 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP   + +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPT--TIEKKINSIPSHEFIEKNFNNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283


>gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
 gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
          Length = 280

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 140/278 (50%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G+GN  +V+D R    +IT     AL        FDQ+ LI + +      
Sbjct: 10  SGLPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTG---V 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+MG 
Sbjct: 67  HLAFFNADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGA 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  +PLAR  D ++                P    MGNPH  FFV DD+   D+A 
Sbjct: 127 PQLDWTEVPLAREMDTLEL----------PIEGTPTATGMGNPHCTFFV-DDVMQTDVAK 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H +F +  N+  A +T  +++ +R WERGVG+T A GS++CA  VA+     T
Sbjct: 176 LGAELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLT 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            R V V + GG L I+W ++  V+MTG  +  + G L 
Sbjct: 236 GRKVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTLT 272


>gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
 gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
          Length = 271

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/274 (34%), Positives = 145/274 (52%), Gaps = 15/274 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D RG    + S    A+        FDQ+ ++ +  DA  D  +
Sbjct: 9   LPFMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVLSNTDDA--DVQL 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+   L  +   ++ T +T RG+L A  +  G  SV+M  P+
Sbjct: 67  TFYNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPL 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLA + D +        P++      P    MGNPH  FFV DD+    L +FG
Sbjct: 127 LDWAYVPLAENVDTL------ALPIDGG----PTATGMGNPHCTFFV-DDVEAVALETFG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F E  N+ +A++   + + +R WERGVG+T + GS++CA+ VA+     T  
Sbjct: 176 ARMEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGC 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           +V + + GG L I+W D+  V+MTG     ++G 
Sbjct: 236 SVQIDLDGGTLHIDWRDDG-VWMTGPTAHVFDGV 268


>gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
 gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
          Length = 289

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 13/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  L ++               +S    +   D ++ I     A  D  +
Sbjct: 1   MKFTKMQGCGNDYLYVNCMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-VAKENRDGSI---SV 118
           R+ N D SE   CGNG RC+ +F+  +   ++   T ET+ GI  +A +  DG +   +V
Sbjct: 59  RMFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PI D   IP+         +   +             VSMGNPH + FVE D+   
Sbjct: 119 DMGVPITDPSSIPMTWEKSICLDETITVTVDGAPLSLRGTGVSMGNPHFVTFVE-DVATA 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++     F E VN+    +     +  R WERG G T ACG+ ACA    +  
Sbjct: 178 PVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYTAIT 237

Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           L K  R    ++V+ +GG L + +  + H+ M G A   +EG+++I 
Sbjct: 238 LGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284


>gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
 gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
          Length = 269

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 138/279 (49%), Gaps = 17/279 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61
             VDF KM G+GN  +V+D R       S+A  +   D       DQ++++    D   D
Sbjct: 1   MRVDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDD--HD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +RI N DG EV++CGN  R V       +     T ET  G +  +  + G+ SVDMG
Sbjct: 59  FRMRIYNSDGGEVEACGNASRAVAM-----LHGSPATVETAGGAIRLEPAQGGA-SVDMG 112

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +W  IPLA + D  +       PV    L     V++GNPH IFFV+ D    DLA
Sbjct: 113 EPRFEWDAIPLAYAMDTANM------PVGWGELEAGIAVNVGNPHVIFFVQ-DADAVDLA 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +    +F E +N+++A   S   L LR WERG GLT ACG+ ACA+ VA+     
Sbjct: 166 ELGPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAISRLH 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               V+V + GG L I W     + MTG A + + G  +
Sbjct: 226 MKSPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264


>gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
 gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
          Length = 277

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/279 (34%), Positives = 137/279 (49%), Gaps = 16/279 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G+GN  +V+D R     +T     AL+       FDQ+ LI + +      
Sbjct: 7   SGLPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALANRHTGVGFDQLALITNTKTG---V 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+MG 
Sbjct: 64  HLAFFNADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVNMGA 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LDW  +PLAR  D ++                P    MGNPH  FFV DD    D+A 
Sbjct: 124 PQLDWAEVPLAREMDTLEL----------PMKGAPTATGMGNPHCTFFV-DDAMQIDVAK 172

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H +F +  N+  A +T  + + +R WERGVG+T A GS++CA  VA+     T
Sbjct: 173 LGAEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAARRGLT 232

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R V + + GG L I+W D+  V+MTG  +  + G L  
Sbjct: 233 GRKVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTLTP 270


>gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
          Length = 271

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 13/281 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +V+D         +  I  L+       FDQ++++       VD 
Sbjct: 1   MLINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              I N +GSEV+ CGNG RC  RF+   +       T +T   I+    N D ++ VDM
Sbjct: 61  RYVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   IPL         + + I   +         +S+GNPH +  V+ D+   D+
Sbjct: 121 GKPSFNPADIPLLVP---QQSEYYQIEGFDLG------AISIGNPHCVMLVK-DVNTIDV 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +    + +  +     N+   ++ +   ++LR +ERG   T ACGS ACA+V       
Sbjct: 171 NTIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + V V + GG  LIE+    H+F++G A+  +EG+++I
Sbjct: 231 LLKKNVVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271


>gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
 gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
          Length = 277

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T   I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
 gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
          Length = 244

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 37  ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--- 93
                     D ++     Q    D  +RI N DGSE + CGNG+RC+  FLT       
Sbjct: 1   MCDRHFGIGADGVIFALPGQK-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISR 59

Query: 94  -RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVN 150
            +  +   T+ GI+  +   DG + VDMG P L  + IP  L     K+      IG   
Sbjct: 60  SKDYYLIHTLAGIIRPQLTDDGQVKVDMGSPRLLAQEIPTTLVPGDSKVINLPLEIGKQ- 118

Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL 210
                +   VSMGNPH I FVE D+    +   G     HP+F +  N    +V +   L
Sbjct: 119 ---TWHITCVSMGNPHCITFVE-DVASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHL 174

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTG 269
            +R WERG G+T ACG+ ACAS+VA    +  +R  ++++ GG L I+W + +  ++MTG
Sbjct: 175 KMRVWERGAGITLACGTGACASLVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTG 234

Query: 270 EAKKEWEGKL 279
            A++ + GK+
Sbjct: 235 PAERVFTGKI 244


>gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
 gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
          Length = 299

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/296 (35%), Positives = 153/296 (51%), Gaps = 21/296 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58
           M      + +M G GN  +V+       + T D + AL+        FDQ++ +   + A
Sbjct: 5   MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALADPATGLGGFDQLIGVEPSETA 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG---- 114
             DAF+R+ N DGS V++CGN +RCV   L     ++    +T+ G   A+         
Sbjct: 65  --DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGSG 122

Query: 115 ----------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
                      ++VDMG P LDW  +PL+   D    +   +GP++   L  P  VSMGN
Sbjct: 123 DPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMGN 181

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH +FF  D L    +   G+L+  HP+F EGVN+  A V + + + LR WERG GLT A
Sbjct: 182 PHVVFFT-DRLDDAFVRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGLTLA 240

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CG+ ACA++VAS     T+R  +V + GG L I+W + + HVFMTG  + E  G L
Sbjct: 241 CGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296


>gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris]
 gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris]
          Length = 277

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T   I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISIGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
 gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
          Length = 278

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V++      + T D I+AL+       FDQ++L+   + ++ D   RI
Sbjct: 6   FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAK----ENRDGSISVD 119
            N DGSEV+ CGNG RC+ +++         +    +T +  ++      +N      V 
Sbjct: 66  FNADGSEVEHCGNGARCLGKYIRDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSELFRVQ 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P       P              +   +        +VSMGNPHA+  V DD+    
Sbjct: 126 MGVPDFS----PFTTLQTSALAQPLSLAAGHFE----CGIVSMGNPHAVICV-DDVETAA 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G+ L +HP+F + VN+   ++ + E + LR +ERGVG T ACG+ ACA+V      
Sbjct: 177 VTAIGSALQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGACAAVSVGIAR 236

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
               + V V + GG L+I+W  +   +FMTG A   + G++
Sbjct: 237 GDLAQTVHVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277


>gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
 gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
          Length = 284

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCH------DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +F+K +G+GN  ++ D R  +       N  +   +  + +     D I+LI +  +   
Sbjct: 4   NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117
              ++I N DGSE + CGNG+RC++ FL    +    +    ET  G+++   + + +I 
Sbjct: 64  -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIK 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I FV +D+  
Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ ACA +V + 
Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
 gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
          Length = 279

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 137/278 (49%), Gaps = 11/278 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V+D      ++ S+ I  L+       FDQ++++    +  VD 
Sbjct: 6   TPLAFTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDF 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +   ++      T  GI+      D  + VDM
Sbjct: 66  NYRIFNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGIIQLNLQGDF-VQVDM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    K IP + + D++    FH   V    L    VV+MGNPHA+  V + +    +
Sbjct: 125 GVPKTSPKEIPFSAATDEI----FHFLKVGDQTL-TISVVNMGNPHAVLQVSN-VETAPV 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G ++  HP F   VN+    V S   + LR +ERG G T ACG+ ACA+ VA     
Sbjct: 179 AQIGPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAG 238

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
             +  V V++ GG L I+W      V M G A K +EG
Sbjct: 239 LLDSPVKVELAGGELQIQWAGIATSVIMEGPATKVYEG 276


>gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
 gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
          Length = 274

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 141/282 (50%), Gaps = 17/282 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             V F KM G+GN  +VID R     +   + A            DQ++L+     A  D
Sbjct: 1   MQVRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPS--AVAD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +RI N DGSEV++CGN  RCVV  L       S   ET+ G+L  + + DG +SV++G
Sbjct: 59  ARMRIFNADGSEVEACGNATRCVVSLLGG-----SARIETVAGLLEGR-SADGQVSVELG 112

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  DW  IPLA + D          PV    L  P   ++GNPH +FFV +      L 
Sbjct: 113 EPRFDWDAIPLAYAMDT------RAMPVAWEELEAPMAANVGNPHVVFFVPET-DAVALD 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +   P+F   +N+++A V    ++ LR WERGVGLT ACG+ ACA+ V++     
Sbjct: 166 RLGPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGL 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            +  V V + GG L I+W     + MTG A   +  + D+  
Sbjct: 226 VDSPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLSA 267


>gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 284

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 130/285 (45%), Gaps = 15/285 (5%)

Query: 11  MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V++        IT +    L+        DQI+L+ +      D   RI N
Sbjct: 1   MHGDGNDFIVLNGIDQDLSGITREQWQVLAHRQFGIGADQILLVENATRPDADFRYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DG EV+ CGNG RC VRF+       +     E    +L  K + DG + VDMG PI +
Sbjct: 61  ADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFE 120

Query: 127 WKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181
            + IP         ++     ++  +NH    +  V  +SMGNPHA+  V  D+    + 
Sbjct: 121 HRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSVLSMGNPHAVQVV-GDVDSAPVL 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  + +   F + VN    +V +   + LR +ERG G T ACG+ ACA+VV+      
Sbjct: 180 EEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGAGETLACGTGACAAVVSGIRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L+I W          V MTG A   +EG+ +I
Sbjct: 240 LDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTVFEGETEI 284


>gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
 gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
          Length = 290

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 107/276 (38%), Positives = 149/276 (53%), Gaps = 6/276 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+ILV+D+R     + + A  AL+      FDQ M+++  +     AF+RI
Sbjct: 13  PFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRI 72

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGS   +CGNG RC+      R       FE+  G+L      DG + VDMG P  D
Sbjct: 73  LNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFD 132

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLAR       +   +       L    +VSMGNPHA+FFV  D    D+   G  
Sbjct: 133 WRDIPLARD----VAETAQVIVPGFEALGPTSLVSMGNPHAVFFVP-DANAVDVEKLGAA 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A +T+ + + L  WERG G T ACG+AACA+ V++    +T R+V
Sbjct: 188 LEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTGRSV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +V + GG L I W + + HV MTG  + E+ G L  
Sbjct: 248 TVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSP 283


>gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
 gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
          Length = 290

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++            D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      ++ +SF  ET+ G++ A+         S+
Sbjct: 62  KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSV 121

Query: 117 SVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++DMGEP L    IP+     +++  + F I    +        VSMGNPH IF+V DD+
Sbjct: 122 TIDMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEIT----AVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++ K   F EGVN+    V S   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           S    KT R V   V + GG L I W  +  V MTG A+    G    + G+
Sbjct: 237 SVLNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGVYYYRGGQ 288


>gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 246

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 124/252 (49%), Gaps = 13/252 (5%)

Query: 35  INALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK- 93
           +           D ++     ++   D  +RI N DGSE + CGNG+RC+  FL      
Sbjct: 1   MEMCDRHFGIGADGVIFALPGEN-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGL 59

Query: 94  ---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGP 148
              + ++   T+ G++  +   DG I VDMG P L    IP  L  +  K+      +  
Sbjct: 60  SRNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGAADGKVINQPLEVEG 119

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208
                      VSMGNPH I FVE D+    L   G     HP F +  N    +V S +
Sbjct: 120 Q----TWEVTCVSMGNPHCITFVE-DVAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRD 174

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFM 267
            L +R WERG G+T ACG+ ACAS+VA+    +++R  +V++ GG L IEW + +  ++M
Sbjct: 175 YLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYM 234

Query: 268 TGEAKKEWEGKL 279
           TG A + + GKL
Sbjct: 235 TGPADRVFTGKL 246


>gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
 gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
          Length = 284

 Score =  308 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCH------DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +F+K +G+GN  ++ D R  +       N  +   +  + +     D I+LI +  +   
Sbjct: 4   NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117
              ++I N DGSE + CGNG+RC++ FL    +    +    ET  G+++   + + +I 
Sbjct: 64  -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIK 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I FV +D+  
Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ ACA +V + 
Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 277

 Score =  308 bits (790), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V++     +      A            D ++++        D  +
Sbjct: 1   MKFTKMTGLGNDFIVLENLENKELEYDVLARKLCDRHFGIGGDGLLIVEPS--GIADIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           RIIN DGSE + CGNG RC  +++     + +   + ET+ GI++ +     +    + V
Sbjct: 59  RIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG PI    LIP+    ++   +   I    +        + +G PH + FV D +   
Sbjct: 119 YMGNPIFRPDLIPVKTDKNQFIEETIKIDGRAYTVT----SLLIGVPHTVIFV-DSIDEN 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VAS  
Sbjct: 174 MIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVASAL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +T R V V    G L IEW  +N++++TG+A+K + G +DI
Sbjct: 234 TDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276


>gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579]
 gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579]
          Length = 288

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          A+ A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGESETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 265

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 98/275 (35%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M++F KM G  N  ++ID R    +   +             DQ+++I   + A  D FI
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P 
Sbjct: 58  HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             WK IP+    D +        P+    L  P  V++GNPHA+FFV D +    L   G
Sbjct: 118 FHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKIG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + TN 
Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++ + GG LLI + D+N + M G     + G +
Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265


>gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C]
          Length = 283

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 128/290 (44%), Positives = 174/290 (60%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  I I N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  + K +P+AR     +      GP     L++  +VS+GN HAIFFVE+++    L
Sbjct: 118 GRPNFNAKNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +    
Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + V +LGG L I + +++H+ MTG  + E+ G L+  TG + K +
Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKKDS 282


>gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13]
 gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13]
          Length = 286

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ M    DN    +I           D ++LI     A  D
Sbjct: 19  TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 76

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 77  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 136

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 137 VTVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 179

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 180 DQVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 239

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 240 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286


>gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 277

 Score =  308 bits (789), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V +     +         L         D ++++        D  +
Sbjct: 1   MKFTKMNGLGNDFIVFENLDNEEYDYDILARKLCDRHFGIGADGLLIVEPS--GIADIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118
           RIIN DGSE + CGNG RC  +++     +K+   + ET+ GI++     K++    + V
Sbjct: 59  RIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG PI    +IP+         +   I    ++       + +G PH I FV + +   
Sbjct: 119 HMGSPIFRTDMIPVKTDKKSFIEETIKIDGRTYIVT----SLLVGVPHTIIFV-NSIDKN 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VAS  
Sbjct: 174 MILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVASAL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             KT R V V    G L IEW  +N++++TG A++ + G++ I
Sbjct: 234 TEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276


>gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 297

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 148/281 (52%), Gaps = 9/281 (3%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM G+GN I+V+D+RG    I++    A+      HFDQ+M++HD       AF+RI N
Sbjct: 10  TKMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYN 69

Query: 69  CDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DGS   +CGNG RCV   L             ET  G L   +  +   SVDMG+P   
Sbjct: 70  IDGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFA 129

Query: 127 WKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           W  IPLA      +     RD   + PV+   LR   +V+MGNPHA+ FV D     DLA
Sbjct: 130 WDAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFVADQ-DACDLA 188

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  HP+F +  N+SIA V S + + L+ WERG G T ACGSAACA++VA+     
Sbjct: 189 LVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGL 248

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             R   + + GG L I W   ++HV MTG    E+  +LD 
Sbjct: 249 AAREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLDP 289


>gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
 gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
          Length = 265

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M++F KM G  N  ++ID R    +   +             DQ+++I   + A  D FI
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P 
Sbjct: 58  HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             WK IP+  + D +        P+    L  P  V++GNPHA+FFV D +    L   G
Sbjct: 118 FHWKDIPVLHACDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPLTKIG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + TN 
Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++ + GG LLI + D+N + M G     + G +
Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265


>gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98]
          Length = 288

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M   H      A+ A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +      + +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVTLVKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    +P+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLFHNQRYAFT----AVSMGNPHAVIFV-DDVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACASVVA+ 
Sbjct: 179 APLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +   V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYEYK 285


>gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
 gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
          Length = 282

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 19/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + +D+       + + + A+     +     D ++L+     A V  
Sbjct: 1   MKFTKMHGLGNSYIYVDLFKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPV-- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SI 116
            +R+ N DGSE ++CGNG+RCV +F      +K ++F  ET+ G++ A  + +G    ++
Sbjct: 59  KMRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +V+MG+P L  + +P+   S +K+  + F +             VSMGNPH +FFVE D+
Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELT----AVSMGNPHGVFFVE-DI 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++ K   F E +N+    V S   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 174 NQAPVDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVA 233

Query: 236 SGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S     +N   +V+V +LGG L IEW ++  V MTG A+   EG  +
Sbjct: 234 SILNGHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFE 280


>gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
 gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
          Length = 288

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M       +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
          Length = 274

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+    + + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLT----SLRVGVPHTIVFVES-LDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264]
 gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264]
          Length = 288

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          A+ A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
 gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
          Length = 288

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          AI A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    D  ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ +  L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVENAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285


>gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
 gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
          Length = 288

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          AI A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    D  ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 285


>gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822]
 gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis]
          Length = 303

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 135/289 (46%), Gaps = 12/289 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            M +F KM G GN  +V+D       +T +   AL+        DQI+L+     A  D 
Sbjct: 7   MMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATQADADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++VDM
Sbjct: 67  RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDM 126

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVED 173
           G    D   +P      S     +D      ++        V    V++ NPHA+  V D
Sbjct: 127 GSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVV-D 185

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+ ACA+V
Sbjct: 186 DVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAV 245

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            A       +  V V   GG L ++W+    + MTG A   + G++DI 
Sbjct: 246 AAGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDID 293


>gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
          Length = 281

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 131/280 (46%), Gaps = 9/280 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F+KM G GN  +V+D+R G      + A            DQI+ I   + A   
Sbjct: 4   AERLRFSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAV 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           A   I N DGS    CGNG RCV  +L      + +SF  ++  GI   +   DG  +VD
Sbjct: 64  AAYGIWNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      +PLA    +       +     +F      VSMGNPHA+  V  D+   D
Sbjct: 124 MGAPRFAPAQVPLAGFGAEAAEYTLELDGRRVVF----GAVSMGNPHAVIEV-GDIDAVD 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  L     F + VN+  A+V +   + LR +ERGVG T ACGS ACA+V +    
Sbjct: 179 VAGTGRALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRR 238

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            +  R  +V + GG L I W  ++  + M G A   +EG+
Sbjct: 239 GRIAREATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGE 278


>gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
 gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
          Length = 271

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 17/274 (6%)

Query: 22  DMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           D R     +     A++    +     D ++ +   ++   D  +RI N DGSE + CGN
Sbjct: 2   DNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKE-GADYSMRIYNSDGSEPEMCGN 60

Query: 80  GMRCVVRFLTSR-------MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP- 131
           G+RC+ +F+             KS+   T+ GI+  +   DG ++VDMGEPIL  + IP 
Sbjct: 61  GIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPT 120

Query: 132 -LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L +   K+  +   +   N         VSMGNPH I FV DD+    LA  G     H
Sbjct: 121 TLGQPDGKVIDETLTVAGENWQVT----CVSMGNPHCITFV-DDVEAVPLADIGPRFEHH 175

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F   +N     V   + L ++ WERG G T ACG+  CA VVA+    K +R  +V++
Sbjct: 176 EAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCDRQTTVEL 235

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
            GG L IEW +NN V+MTG A   + G + +   
Sbjct: 236 PGGNLEIEWANNNRVYMTGPATLVFSGDVAVDAA 269


>gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1]
          Length = 283

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 126/286 (44%), Positives = 171/286 (59%), Gaps = 5/286 (1%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             + F+KM G+GN+I+V DMR    NIT  AI  L+ D  THFDQIM IH       D  
Sbjct: 1   MKIPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I I N DGS  ++CGNG RCV+ +L++    KSF  ET  G++  +   +G I VDMG P
Sbjct: 61  IEIWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+ K +P++R     +  +   GP     L++  +VS+GN HAIFFV+ ++    L  +
Sbjct: 121 HLNAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKY 175

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L   P+F E  N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+     T 
Sbjct: 176 GPKLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTE 235

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           R + V + GG L I + ++NH+ MTG+A+ E+ G  D  TG + K 
Sbjct: 236 RHIDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEKD 281


>gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens]
          Length = 311

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 133/288 (46%), Gaps = 14/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K +G+GN  L++D R         ++A      +     D ++ +   ++   D  
Sbjct: 25  LAFSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGEN-GADFK 83

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-------TSRMKRKSFTFETIRGILVAKENRDGSI 116
           + I N D SE + CGNG+RC+ R+L             + FT  T  G +V     DG I
Sbjct: 84  MTIYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLI 143

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEP L    +P A +    DR                  VSMGNPH++ FV DD  
Sbjct: 144 TVDMGEPELAGPKVPCALAPTDGDR-VVDAALEAGGATYAVTAVSMGNPHSVAFV-DDAK 201

Query: 177 HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             DL   G  +      F E VN     V     +++  WERG G+T ACG+ ACA  VA
Sbjct: 202 AVDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGVA 261

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
                +T+R   V + GG L IEW + +N V+MTG A+  + G   + 
Sbjct: 262 GVLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGSAPLP 309


>gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498]
          Length = 283

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 129/290 (44%), Positives = 173/290 (59%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  I I N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D K +P+AR     +      GP     L++  +VS+GN HA FF E+++ H  L
Sbjct: 118 GRPNFDAKNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +    
Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + V +LGG L I + +++HV MTG  + E+ G L+  TG + K +
Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKKDS 282


>gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134]
 gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus]
 gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134]
          Length = 288

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          A+ A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 281

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 140/279 (50%), Gaps = 10/279 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + S +++F KM G  N  ++ID R    +   +             DQ+++I   + A  
Sbjct: 13  LFSHVINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA-- 69

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D FI I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+M
Sbjct: 70  DCFIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNM 129

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P   WK IP+    D +        P+    L  P  V++GNPHA+FFV D +    L
Sbjct: 130 GYPKFHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFV-DSIDDIPL 182

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   +
Sbjct: 183 TKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRN 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            TN   ++ + GG LLI + D+N + M G     + G +
Sbjct: 243 YTNHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 281


>gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
 gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
          Length = 269

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ M    DN    +I           D ++LI     A  D
Sbjct: 2   TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 60  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 163 DQADLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS]
          Length = 303

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 135/289 (46%), Gaps = 12/289 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            M +F KM G GN  +V+D       +T +   AL+        DQI+L+     A  D 
Sbjct: 7   MMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++VDM
Sbjct: 67  RYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDM 126

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVED 173
           G    D   +P      S     +D      ++        V    V++ NPHA+  V D
Sbjct: 127 GSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVV-D 185

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+ ACA+V
Sbjct: 186 DVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAV 245

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            A       +  V V   GG L ++W+    + MTG A   + G++DI 
Sbjct: 246 AAGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDID 293


>gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
 gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
          Length = 269

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 134/287 (46%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ M    DN    +I           D ++LI     A  D
Sbjct: 2   TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 60  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 163 DHVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803]
 gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803]
          Length = 288

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M       +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FVE 
Sbjct: 120 LAKIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE- 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13]
          Length = 284

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 150/285 (52%), Gaps = 19/285 (6%)

Query: 7   DFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++M   +   + +++ A+   +       D ++LI   + A V   
Sbjct: 5   QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEVAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117
           +RI N DGSE ++CGNG+RCV ++      ++RK+F  ET+ G++ A+      +  S++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAGKVTSVT 122

Query: 118 VDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L  K IP L    + +  + F +    +        VSMGNPH + F  DD+ 
Sbjct: 123 VDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEIT----TVSMGNPH-VIFYLDDIK 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K P F EGVN+    V + + L  R WERG G+T ACG+ ACA+VVAS
Sbjct: 178 DAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGACAAVVAS 237

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +KT  N+   V + GG L I W  +  V M G A+    G  
Sbjct: 238 VLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAEVICTGSF 282


>gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 276

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +V+D       +T+  +  L+        DQI+L+       +D 
Sbjct: 1   MKMPFVKMHGLGNDFVVLDGVRQSVVLTAPQLRHLADRHFGIGCDQILLVEPASQPGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC VRF+  +    ++    ET+ G++  +   DG+++VDM
Sbjct: 61  RYRIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+     IP   + + + +    +   +         V MGNPHA+  V  D+    +
Sbjct: 121 GVPVFASAQIPFVAATEDLVQ-TLRVADEDIAIT----AVGMGNPHAVQVVA-DVDLAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ VA     
Sbjct: 175 ERQGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAVAGIARG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
             +  V V   GG L I W+ +   V MTG A   ++G++++
Sbjct: 235 LLDSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276


>gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
 gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
          Length = 269

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 133/287 (46%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ M    DN    +I           D ++LI     A  D
Sbjct: 2   TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 60  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 120 ITVDMGMPAV----------------GEIALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DLAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 163 DQVDLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse]
 gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse]
          Length = 283

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/283 (45%), Positives = 169/283 (59%), Gaps = 5/283 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM+G+GN+I+V DMR     +T  AI AL+ D  THFDQIM IH       D  I I
Sbjct: 4   PFRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCV+ +LT     +SF  ET  GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +  +   GP     L++  +VS+GN HAIFFVED++    L  +G  
Sbjct: 124 AKEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            V + GG L I + ++NH+ MTG  K E+ G L+  TG + K 
Sbjct: 239 DVNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKKD 281


>gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 288

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/291 (34%), Positives = 149/291 (51%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M       +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FVE 
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE- 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 271

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 132/281 (46%), Gaps = 13/281 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
            +++F KM G+GN  +++D         ++ I  L+       FDQ++L+      +VD 
Sbjct: 1   MLINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
              I N DG EV+ CGNG RC   F++ +          ET  GI+    N D ++ VDM
Sbjct: 61  RYVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P  +   I L                   +   +   VS+GNPH +  VE D+   D+
Sbjct: 121 GKPSFNPADILLLVPQQSTYYQ---------IEGFDLGAVSIGNPHCVMLVE-DVNTVDV 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           +S    + +  +     N+   ++ +   ++LR +ERG G T ACGS ACA+VV      
Sbjct: 171 SSIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVVYGVEQG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                V   + GG  LIE+    HVF++G  +  +EGK++I
Sbjct: 231 LLKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271


>gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
 gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
          Length = 288

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 23/293 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S   F KM G+GN  + ++M     R     + ++ ++ +  +     D ++LI     A
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNI--NTGIGADGMILICPSDVA 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGS 115
            V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    D  
Sbjct: 60  PV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDK 117

Query: 116 IS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           ++   +DMG P L  + IP+    D    R+ F      + F      VSMGNPHA+ FV
Sbjct: 118 VTLAKIDMGAPRLTREEIPMLGEGDTPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD+    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA
Sbjct: 174 -DDVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232

Query: 232 SVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +VVA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
 gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
          Length = 288

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M       +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE ++CGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LVKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
 gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
          Length = 288

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          A+ A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+  V D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
 gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055]
 gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B]
 gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum]
 gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94]
 gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
          Length = 288

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
 gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
          Length = 288

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVDQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 291

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 140/285 (49%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+  +GN  ++I+    +      A+ A         D ++++   Q A  D  +R
Sbjct: 1   MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR---DGSISVDM 120
           I N DGSE ++CGNG+RC+V+++       ++  T ET  G+  A  +    D  I   M
Sbjct: 59  IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118

Query: 121 GEPILDWKLIPLARSFDK-------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GEPIL+   IP+     K              +    H        VSMGNPHAI F+E 
Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTL----AFVSMGNPHAIEFIES 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL  + L   G  + KH MF    N  IARV     +++R WERGVG T ACGS ACA V
Sbjct: 175 DLEAFPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVV 234

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           VAS  +  T   V +K+ GG L  EW +   V++TG A+  + G 
Sbjct: 235 VASWIMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQVVFSGN 279


>gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
 gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
          Length = 281

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 105/283 (37%), Positives = 157/283 (55%), Gaps = 9/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + +M G GN   ++D RG    ++++A+  ++   N   DQ++ + +      D F+R
Sbjct: 1   MKYYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSAN--ADQVVSLENSMRG--DIFMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SISVDMGEP 123
           I N  GSEV +CGN  RCV   +     R +   ET  G+L+A  + +G   ISVDMG P
Sbjct: 57  IWNNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +L W+ IPLA   D    D   IGP++  +L+ P  V+MGNPH +FFV D+L   D+   
Sbjct: 117 LLKWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFV-DELDAVDVVGI 174

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H MF E  N+  A+V   + + LR WER  GLT ACG+ ACA+VVA       N
Sbjct: 175 GPLIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLN 234

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
           R+ +V + GG L I+W + ++HV MTG  + E + ++      
Sbjct: 235 RSCTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEISAPASA 277


>gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
 gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
          Length = 273

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R            +   +       D I+++   + A +   
Sbjct: 1   MKFIKMQGTGNDFVVIDDRDNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117
           + IIN DGS    CGNG+RC  +++     +K      ET  GI  A  N    +   ++
Sbjct: 59  MIIINSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG P  D K IP+  S D++ +    I    +        + MG PH + F   DL  
Sbjct: 119 IDMGTPSFDPKKIPV-NSCDEVVKKELKINEKTYSIT----SMFMGVPHTVIF--GDLEK 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + K+ +F EG N++   V + + + ++TWERG G T ACG+  CA  VAS 
Sbjct: 172 YDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T   V   + GG L IE   +N VFMTG A+  ++G+ DI
Sbjct: 231 KLGFTEGKVKAHVPGGILFIEV-KDNKVFMTGPAEVSFKGEYDI 273


>gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
 gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
          Length = 277

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN   V+D+R     +TS+ I A S       FDQ++++       VD 
Sbjct: 1   MTIRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
             RI N DGSEV+ CGNG RCV RF      +  F  ET RG+L      D  + V MG 
Sbjct: 61  KYRIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGI 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D        + P     ++    +++GNPHA+ +V        +  
Sbjct: 121 PTFKPSEIPFVAD-DAALNYNLPLYPDQASQIK-VGALAIGNPHAVVWVSST-AAAPVEE 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  HP F   VN+  A       ++LR +ERGVG T ACG+ ACA+ +        
Sbjct: 178 LGPILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGL 237

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
              VSV + GG L I+W      V MTG A   ++G+L 
Sbjct: 238 VSPVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGELS 276


>gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 288

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 148/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M       +++   A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
 gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
          Length = 279

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  + I+       +  DAI           +   D I+LI     A  D
Sbjct: 3   LSFTKMHGTGNDYIYINCFKEKFTV-EDAIKYSPILSHRHYSIGADGIILIMPSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGS 115
             +R+ N DGSE + CGNG+RCV ++   R   K      ET+RGIL A    K+    +
Sbjct: 60  VQMRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEVDT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + + M  PIL+   IP       +  +        + F      VSMGNPHA+ FV +DL
Sbjct: 120 VEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYFT----AVSMGNPHAVIFV-NDL 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           ++ D++S G+ +  + +F    N+    + +   +  RTWERG G T ACG+ A A  VA
Sbjct: 175 HNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVCVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +T+  +   +LGG L++ + +N++VFM GEA+  +EG + +
Sbjct: 235 GFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279


>gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
 gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
          Length = 268

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 28/287 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             ++F KM G+GN  + ++       N    +I           D ++LI D   A  D 
Sbjct: 1   MKIEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE + CGN  RC+ ++L       +     +T+ GI    L  KE +  S+
Sbjct: 59  SMRIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P                  D   +   +    R    VSMGNPH + FV D + 
Sbjct: 119 RVDMGIP-----------------ADIHWVDLGDAYPFRKGVAVSMGNPHLVIFV-DKME 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              LA  G +L +HP+F + VN+  A+V + E++ +R WERG G+T ACG+ ACA+ VA+
Sbjct: 161 EVALAEVGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAA 220

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
               +     +V M GG L I+W  +  H++MTG A K ++G +++K
Sbjct: 221 AFSGQCGSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELK 267


>gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555]
 gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016]
 gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555]
 gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 274

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +VID R           A+   +       D ++++ +   AS+   
Sbjct: 1   MKFTKMHGTGNDFIVIDDRENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++     +K K    ET  GI  A    K  +   I+
Sbjct: 59  MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG P    + +P+    +++      I   N++       + MG PH + F    L  
Sbjct: 119 IDMGMPSFAPRKVPVEFK-EEVIEKEVKIKNKNYIIT----TLFMGVPHTVIF--GKLED 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+A  G  + K+P+F++G N++   + + + + ++TWERG G T ACG+ +CA VVA+ 
Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  T + V V + GG LL+E  D+N VFMTG A   ++G+ DI
Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274


>gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
          Length = 285

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +VID      N+T      L+        DQI+++     A +D 
Sbjct: 1   MKIKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG R  VRF+T +    +      T+ G++V +   DGSI+VDM
Sbjct: 61  RYRIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDM 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+     +P      D +      + P+  +       V+SMGNPHA+  V D +   
Sbjct: 121 GAPVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMSVLSMGNPHAVQIV-DAVETA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            LA  G  +  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+ VA   
Sbjct: 180 GLALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
             + +  V V+  GG L I W    +HV ++G A   +EG++ + 
Sbjct: 240 RGQLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284


>gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
 gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
          Length = 261

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 126/266 (47%), Gaps = 10/266 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + D I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+       + S +  T +G +V     D  ++V+MG P  +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKYSVSVSTKKGKMVLSIEEDDQVTVNMGVPEFEPSKIP---- 116

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F     ++ +I       L     VSMGNPH    V DD+   D+ + G LL  H  F E
Sbjct: 117 FKAKQTEKTYILRTEDKTLFCG-AVSMGNPHV-VTVVDDVATADVDTLGPLLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    +V +   ++LR +ERG G T ACGS AC +V         +  V V + GG L
Sbjct: 175 RVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSL 234

Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLD 280
            I+W      ++MTG A   ++G+L 
Sbjct: 235 NIQWQGVGKPLYMTGPATHVFDGQLS 260


>gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 274

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+    + + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +         S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MSNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLT----SLRVGVPHTIVFVES-LDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
 gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
          Length = 283

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 127/283 (44%), Positives = 166/283 (58%), Gaps = 5/283 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+VIDMR     +T  AI ALS D   HFDQIM IH       D  I I
Sbjct: 4   PFSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCVV +L      + F  ET  GI+      D  ISVDMG P  +
Sbjct: 64  WNADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  
Sbjct: 124 AKEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            V +  G L I + +++HV MTG  K ++ G L   TG + K 
Sbjct: 239 DVNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKKD 281


>gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3]
          Length = 284

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 132/290 (45%), Positives = 174/290 (60%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI  L+ +  THFDQIM IH    + +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  I I N DGS+ ++CGNG RCVV +LT+    +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  DFRIEIWNADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D K +P+A      +      GP     L++  ++S+GN HAIFFVE+++ H  L
Sbjct: 118 GCPNFDAKNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERGVGLT ACGSAACAS VA+    
Sbjct: 173 EKYGPKLEHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + +   GG L I + +NNH+ MTG  + E+ G L+  TG + K  
Sbjct: 233 LTERRIDINSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKKDA 282


>gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 289

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 19/290 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           + M+ F+KM G+GN  +VID        ++   + +  + T   +   D ++ +      
Sbjct: 2   TRMILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGS 115
             D   RI N DGSE + CGNG+RC  +F+     ++++    ET+ GI   +    DG+
Sbjct: 61  EGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGA 120

Query: 116 I---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +    VDMG        IP+     +       +   +         +S+GNPHAI FV 
Sbjct: 121 VVSSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLT----ALSVGNPHAIIFV- 175

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD    DL   G  +  HP+F E +N+    V S   + + TWERG G T ACG+ A AS
Sbjct: 176 DDAEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATAS 235

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           V+A   L K + +V V + GG L I+ + +      +M G+A   ++G L
Sbjct: 236 VIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285


>gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 279

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D +     +    A            D +M     + A  D  +
Sbjct: 1   MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDGSIS---V 118
           R  N DG+E + CGNG+RC  R+L     + +  FT ET+ G +V +   +DG++S   V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L+   IP+A    +++      +    +        VSMGNPH + FV DD   
Sbjct: 119 DMGIPVLEGARIPVAGFGTERVVAQPITVAGKEYA----MTCVSMGNPHCVVFV-DDADG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G     H  F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLKQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                +R  ++++ GG + + W ++ H+ MTG A++ + G+
Sbjct: 234 LNDVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGE 274


>gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
 gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
          Length = 308

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          A+ A    + +     D ++LI     A V   +
Sbjct: 26  FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 83

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 84  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 143

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 144 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 198

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 199 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 258

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 259 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305


>gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1]
 gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1]
          Length = 288

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          A+ A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
 gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
          Length = 288

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
 gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
          Length = 286

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 102/286 (35%), Positives = 148/286 (51%), Gaps = 19/286 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
             + F KM G+GN  + ID+      + +  D    +S        D ++LIH   DA  
Sbjct: 1   MQIPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDG 114
           D  +RI N DGSE +SCGNG+RC  ++      +  K F  +T   I+ A+     N+  
Sbjct: 59  DVGMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVN 118

Query: 115 SISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +++DMGEPIL    IP+  + D K+  + F +        +    VSMGNPH +FFV D
Sbjct: 119 QVTIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGE----TQYITAVSMGNPHGVFFV-D 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G  + K   F E +N+    V S   L+ R WERG G+T ACG+ ACA+V
Sbjct: 174 DIEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAV 233

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VA+    K  +   + V + GG L IEW ++NHV+MTG A+    G
Sbjct: 234 VAATLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAEVIATG 279


>gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
 gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
          Length = 282

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 12/278 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M  +GN  +VI+          +           +   D ++ I      + D   RI N
Sbjct: 1   MHALGNDYIVINEFDGEKVKNKEEFSKKVCRRRFSIGADGVIFIQKPSSNNYDVKFRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGI----LVAKENRDGSISVDMGEP 123
            DGSE + CGNG+RC  +++  R+ K+     ET  G+    L  +++R   I V MG+P
Sbjct: 61  SDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGLRVCELEVEDDRVKKIRVYMGKP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY--DLA 181
               K IP+    ++   +R  +    +L   N   VS+GNPHAI FV DDL      L 
Sbjct: 121 SFKCKDIPVKSEKEEFINERAELKN-PYLKEVNITAVSVGNPHAIIFV-DDLEKIREHLD 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ +   P+F E +N+   +V + + + + TWERGVG T ACG+ A AS V S  L  
Sbjct: 179 VIGSEIENLPIFPERINVHFVKVLNDKEIKILTWERGVGYTMACGTGATASAVVSNRLGF 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T   V V + GG L IE  D+   +M G+A   ++G +
Sbjct: 239 TKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVMVYDGVM 275


>gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
 gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
          Length = 267

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 10/273 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+DF KM G  N  ++ID R    N   D     +       DQI++I   + A  D F+
Sbjct: 1   MIDFIKMHGTLNDFVIIDCRSKFYN-NIDYKAIANRKTGIGCDQIIVITKSEKA--DCFM 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  ++ + T E    IL      + ++ V+MG   
Sbjct: 58  HIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIAK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IP+++  D +        P+    L +P  +++GNPHAIFFV + +    L   G
Sbjct: 118 FHWTDIPISQECDTLHL------PITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKLG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F +  N+SIA + S   + LR WERG G TA+CGS ACA++VA+     T+ 
Sbjct: 171 PKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTDT 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             ++ + GG LLI + ++N + M G     + G
Sbjct: 231 TATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263


>gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
 gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
          Length = 279

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D +     +    A            D +M     + A  D  +
Sbjct: 1   MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSIS---V 118
           R  N DG+E + CGNG+RC  R+L     + +  FT ET+ G +V     +DG++S   V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L+   IP+A    + +      +    +        VSMGNPH + FV DD   
Sbjct: 119 DMGIPVLEGARIPVAGFGTEHVVAQPIMVAGKEYA----MTCVSMGNPHCVVFV-DDADG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G     H  F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  +R  ++++ GG + + W ++ H+ MTG A++ + G+
Sbjct: 234 LNNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGE 274


>gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  + +D               +S        D ++LI     A  D F+ + N 
Sbjct: 1   MHGAGNDYVYVDCTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEMYNS 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG------SISVDMG 121
           DGS  Q CGNG+RCV +++       +K    +T+ GI   + N D       S+ V+MG
Sbjct: 59  DGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRVNMG 118

Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL-----RNPFVVSMGNPHAIFFVED 173
            PIL    IP+    +  + + +D      V+              VSMGNPH + F++D
Sbjct: 119 SPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVFMDD 178

Query: 174 DLYHYD--LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           D    +  +   G L   H +F E  N    +V    +L +R WERG G T ACG+  CA
Sbjct: 179 DFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTGCCA 238

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           S+VA+           + +LGG L I W    N V+M G A   ++G +DI
Sbjct: 239 SLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDI 289


>gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 307

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  +V+D      N+T+  + AL+        DQ++L+       VD 
Sbjct: 1   MKLKFTKMHGAGNDFVVLDGYTQPVNLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDM
Sbjct: 61  RYRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDR-FHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           G P+ D +L+P A    +  R+    + P++ +   R   VVSMGNPHA+  V DD   +
Sbjct: 121 GTPVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVV-DDAEAF 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+  A   
Sbjct: 180 PVLVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIR 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281
               +  V V   GG L I W        + M G A   +EG++++
Sbjct: 240 RGLLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIEL 285


>gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINIGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4]
 gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4]
          Length = 279

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 13/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +V+  R    +    A            D ++ I   ++A  D  +R
Sbjct: 1   MHFVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSEEA--DITMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGSISVD 119
           I N DGSE + CGN +RCV +       +  +     T  GI    L  K+ +  S +VD
Sbjct: 59  IFNADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL+   IP+     K+  +           +     +S GNPH + FV   +    
Sbjct: 119 MGEPILERSAIPMQGPPGKVVNEPLIF---EDGLVLRVTALSFGNPHCVLFVP-AVEEAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  L  HP F    N+    V     + +R WERGVG T ACGS ACA+ VAS   
Sbjct: 175 VEELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILN 234

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
             T R + V + GG L I W  ++ HV++ G A   ++G+
Sbjct: 235 GYTAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGE 274


>gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
 gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
          Length = 288

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 147/291 (50%), Gaps = 19/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          A+ A    + +     D ++LI     A V
Sbjct: 2   SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS 117
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++
Sbjct: 62  --KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVT 119

Query: 118 ---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+  V D
Sbjct: 120 LAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-D 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+V
Sbjct: 175 DVEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAV 234

Query: 234 VASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           VA+    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 235 VAAILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYEYK 285


>gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 274

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 146/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+    + + +  A            D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALE-NVDYSELAAKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R  +K++    ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVES-LDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2]
 gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2]
          Length = 283

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 15/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KMEG+GN  +++D R       +    +               +I      + D  
Sbjct: 3   LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDSETADVG 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116
            +I N DGSE + CGNGMRC  + +  +  + ++ FT ET+ G ++ +       +  +I
Sbjct: 63  FKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVEAI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+   IP   +  +   ++  +         +   VSMGNPHA+ FV DD+ 
Sbjct: 123 CVDMGEPILEPDRIPFKCNRQRAVNEQIQVKGE----TVSITAVSMGNPHAVIFV-DDVK 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G  +  H +F    N+    V + + L +R WERG G T ACG+ A A +VA+
Sbjct: 178 KIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLVAA 237

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
                T     V + GG L I W   +NH+F TG A   + G++ I
Sbjct: 238 SLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283


>gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820]
 gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820]
          Length = 288

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/287 (34%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 285


>gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 286

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 19/288 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           M+ F+KM G+GN  +VID        ++   + +  + T   +   D ++ +        
Sbjct: 1   MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SGEG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSI- 116
           D   RI N DGSE + CGNG+RC  +F+     ++++    ET+ GI   +    DG++ 
Sbjct: 60  DIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGAVV 119

Query: 117 --SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              VDMG        IP+     +       +   +         +S+GNPHAI FV DD
Sbjct: 120 SSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLT----ALSVGNPHAIIFV-DD 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               DL   G  +  HP+F E +N+    V S   + + TWERG G T ACG+ A ASV+
Sbjct: 175 AEGVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVI 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           A   L K + +V V + GG L I+ + +      +M G+A   ++G L
Sbjct: 235 AGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282


>gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI]
 gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 288

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
 gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
          Length = 269

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 130/287 (45%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++      +   +  I           D ++LI     A  D
Sbjct: 2   TKSIRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 60  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 120 VTVDMGMPAV----------------GEMALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               LAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 163 DQVGLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 279

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V++        +   I  L         D ++L+    + +  AF+
Sbjct: 1   MKFLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR----DGSISV 118
              N DG+  Q CGNGMRC+ +++T R  +K+  FT  +  G +  +  +    + +I V
Sbjct: 59  DYYNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG  +   + IP+    +++    F    V + +       SMGNPH +     D    
Sbjct: 119 DMGNVVFSAQKIPVISKKEEVIGAHFDWDGVTYSY----GCASMGNPHMVVLT-GDFDQT 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G    KH MF E  N+S A V     + + TWERG G T ACG+  CA+V     
Sbjct: 174 PIEAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHR 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           L K + AV  ++ GG L +E  D +HV+MTG A+  +EG +D++ 
Sbjct: 234 LGKVDTAVEAQLSGGILSVE-LDGSHVWMTGPAQTVYEGSVDVEA 277


>gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 269

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 28/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      ++  S AI           D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DG+    CGNG+RCV ++      + +   + ET  GI    +  +  +  +++V
Sbjct: 59  DMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDL 175
           DMG+P+   +L            +   I   ++ F+     +SMGNPHA+ F    E+ +
Sbjct: 119 DMGKPVQTSEL-----------FEELEIKGKSYRFIG----ISMGNPHAVVFEDEFEEPI 163

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL   G     H  F +  N    RV     + +R WERG G T ACG+ ACA  VA
Sbjct: 164 ETLDLEKIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAVA 223

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
           +     T+  V V++LGG L I W  + + V+MTG A + + G+  
Sbjct: 224 AILAGCTDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGEYQ 269


>gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
 gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
          Length = 293

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/288 (38%), Positives = 158/288 (54%), Gaps = 8/288 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +V+D+R     +T     A++  +     DQ++ I   +   
Sbjct: 1   MTGMTHHFLKMNGLGNDFVVLDLRREPFVLTDAIARAIADREKGIGCDQLITIEPARQGG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D F+ I N DG  V++CGN  RC+ + +     + + T ET+ G  VA       I+VD
Sbjct: 61  -DVFMGIRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P LDW  IPL+  F         IGP+    + +P VV++GNPHA+FFVE D+   D
Sbjct: 120 MGAPRLDWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAID 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G +L  HP+F E  N+S+A+V S   + +RTWERG GLT ACG+AACA+ VA+   
Sbjct: 179 LERSGPMLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRR 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282
            KT R ++V + GG L +EW  +      HV MTG    ++EG LD +
Sbjct: 239 RKTERKITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286


>gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 134/297 (45%), Gaps = 25/297 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--VDAF 63
           + F KM G+GN  ++  M+    N    A            D +++    ++++   D  
Sbjct: 1   MKFEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDG------- 114
           +RI N DGSE + CGN +RC+ ++L        K     T  GI   +   +        
Sbjct: 59  MRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEIN 118

Query: 115 ----------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
                      + V+M +P+L    IPLA   D+ D  R       +  +     VS G 
Sbjct: 119 LSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYG-IYYLTEVSTGP 177

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV++ L    L   G ++ KH +F  G N+   +V S   L ++ WERG G T A
Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           CG+ ACA VVA+      N    V++ GG L I W +N   ++M G A+  + G+L+
Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294


>gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
 gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
          Length = 288

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/272 (40%), Positives = 154/272 (56%), Gaps = 3/272 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN+ILV+D+RG    +T+    A++      FDQ+M +H+ + A  +AF+RI N D
Sbjct: 13  MNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNND 72

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS   +CGNG RCV   L  + +  +   ET  G + +    +   SVDMG P LDW+ I
Sbjct: 73  GSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRAI 132

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA   +  D  R  + P           V+MGNPHA+FFVED      L + G  +  H
Sbjct: 133 PLAG--EGADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVEDP-AAIALEALGPPIETH 189

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E VN+S A V +   + LR WERG G+T ACGSAACA++VA+     + R   V++
Sbjct: 190 PLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVRL 249

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            GG L I+W  ++HV MTG  + E+  +LD +
Sbjct: 250 PGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281


>gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
 gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
          Length = 292

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 128/285 (44%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  +VID       + +  I A+         D ++L+   +    D  +
Sbjct: 1   MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMCRPHFGIGADGLILVEPSES--CDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR----DGSIS 117
              N DGS  + CGNG+RC+ ++          K F  ET  G +  +         +I 
Sbjct: 59  NYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVSTIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG      + IP+      +  ++         +       SMGNPH    VE+ +  
Sbjct: 119 VSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTY----GCASMGNPHMAVLVEN-VDS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G    KHPMF    N+S A V S +S+ + TWERGVG T ACG+  CA+V    
Sbjct: 174 FPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACGTGTCATVAVLH 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +      V   + GG L+IE  D + VFMTG AK  + G  +++
Sbjct: 234 RMGLVGNKVHACLSGGDLVIE-LDGSAVFMTGPAKVVFRGTYEMQ 277


>gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
 gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
          Length = 279

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 16/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  ++++         +   A            D ++L+   + A +   
Sbjct: 1   MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQARL--R 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS----IS 117
           +RI N DGSE + CGNG+RC  R++      + +    ET+ GI+  +   +G     + 
Sbjct: 59  MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+ + IP+A +   +  +   +             VSMGNPH +FFVE D+  
Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIEVNGE----TWRGTCVSMGNPHCVFFVE-DVTG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++  HP+F    N+   +V + E L +R WERG G T ACG+ ACA+ VA  
Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
              ++NR V+V +  G L IEW   +NHV+MTG A + + G   + 
Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279


>gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4]
          Length = 264

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 128/282 (45%), Gaps = 26/282 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++               +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS    CGNG+RCV ++      + +     ET  GI    +  K+ + G ++V
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P    ++            +   +    + F      VSMGNPHA+ F+ D +   
Sbjct: 119 DMGRPEQTSEI-----------GEPITVAGKEYRFTG----VSMGNPHAVVFM-DGIKDM 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     H  F +  N     +     +++R WERG G T ACG+ ACA+ VA   
Sbjct: 163 EIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVACIL 222

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
              T+  V V +LGG LLI W  + + VFMTG A + + G++
Sbjct: 223 NGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264


>gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
 gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
          Length = 279

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM GIGN  + +D       +  DA+           +   D I+LI     A  D
Sbjct: 3   LNFTKMHGIGNDYIYVDCFKEKFTV-EDAMKYSPILSHRHYSIGADGIILIMPSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK----ENRDGS 115
             +R+ N DGSE + CGNG+RCV ++   +   K      ET+RGIL AK    +N   S
Sbjct: 60  VQMRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNEADS 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + ++M  PIL+   IP     + +  +        + F      VSMGNPH + FV DD+
Sbjct: 120 VEINMDSPILEGLKIPTTIDKNVIIDEPITFNGKTYYFT----CVSMGNPHTVIFV-DDV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            + D+A  GN +  + +F    N+    V +   +  RTWERG G T ACG+ A A  VA
Sbjct: 175 SNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASAVCVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +T+  +   +LGG L++ + +NN VFM GEA+  +EG + +
Sbjct: 235 GFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279


>gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
 gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
          Length = 289

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 142/275 (51%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +++D RG     T     A+        FDQ+  I D ++   D  +
Sbjct: 21  LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGEN--CDIAL 78

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV     +   +   T  T RG+L  +   + ++ V+MG P+
Sbjct: 79  DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRGEMRGE-AVWVNMGPPV 137

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D +                +P  V MGNPHA+FFVE D+   D+A+ G
Sbjct: 138 LDWAQVPLAREVDLLHL----------PIAGDPCGVGMGNPHAVFFVE-DIDAVDVAARG 186

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +   P++ E  N+   +V S + + +R WERG G+T ACGS ACA  VA+     T R
Sbjct: 187 AEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTGR 246

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V +++ GG L ++W D+  V+MTG   + +EG+L
Sbjct: 247 HVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280


>gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354]
          Length = 269

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
             + F KM G+GN  +++D R      + +  I AL+       FDQ++++    +A  D
Sbjct: 1   MRLPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +RI N DG EV++CGN  R V       +  +  +  T  G L  +   + +    MG
Sbjct: 59  LAMRIHNADGGEVEACGNATRAVAV-----LHGQPASIATAGGTLRVRPGENMA-EAAMG 112

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                W+ IPLA + D  +       P+    L  P  V++GNPH +FFV DD     L 
Sbjct: 113 RARFHWQDIPLAYAMDTREM------PLGWDMLERPSAVNVGNPHIVFFV-DDARAVPLE 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +   P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+   +     
Sbjct: 166 TLGPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGL 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  V V + GG L I   +   + M G A + + G  ++ 
Sbjct: 226 VDAEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFELD 266


>gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7]
          Length = 269

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 132/287 (45%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++ M    DN    +I           D ++LI     A  D
Sbjct: 2   TKSIRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI----LVAKENRDGS 115
             + I N DGSE   CGN  RC+ +++      ++   T ET+ GI    L  +      
Sbjct: 60  FSMHIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P +                    +       +    V+SMGNPH + FV D++
Sbjct: 120 VTVDMGMPAV----------------GEMALEVEAGGEIYTGTVISMGNPHLVIFV-DEM 162

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               LAS G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA
Sbjct: 163 DQVGLASVGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVA 222

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                KT R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 223 GVVRGKTKRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
 gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
          Length = 302

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 140/293 (47%), Gaps = 20/293 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +VI   D     +    +    +     +   D ++ +    +   D
Sbjct: 8   LEFTKMHGLGNDYIVINEFDGIKIKEEDKEEFSRKICKRGFSIGADGVIYVQKPTNDKYD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+ V++ + +      I
Sbjct: 68  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMDIENDIVKKI 127

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV----NHLFLRNPFVVSMGNPHAIFFVE 172
            V MG P    K IP+     K + D F    +    + +      VV++GNPHA+ FVE
Sbjct: 128 KVYMGAPTFQLKDIPMKVEG-KSENDEFLNEAIKLNNDLIDEIKLSVVNVGNPHAVIFVE 186

Query: 173 D-----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           D     D    +L + G  +  H +F E +N+    V +   + + TWERG G T ACG+
Sbjct: 187 DNNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERGAGYTTACGT 246

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++GKL 
Sbjct: 247 GTTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGKLQ 298


>gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
 gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
          Length = 274

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+    + + +  A+           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALE-NVDYSELAVKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R  +K++  T ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVES-LDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K  +FS+G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3]
 gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3]
          Length = 288

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 145/287 (50%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   + V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
 gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
          Length = 276

 Score =  302 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K  G+GN  ++++       +    A +          D ++ +           +
Sbjct: 1   MQFSKWHGLGNDFVIVEPEKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPL--GGSAFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+E + CGN  RCV  ++          F   T  GI+  K   +GS+ VDMGE
Sbjct: 59  RIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IP+A        +   I      F  +   VSMGNPHA+ FV  D+   +L  
Sbjct: 119 PHLLRGEIPVAGD-PASGAENLAIELPGRQF--SAVGVSMGNPHAVIFVP-DINAVELEK 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G  +  H +F    N+    V S   + +R WERG G+T ACG+ +CA+ VA     +T
Sbjct: 175 WGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVTGRT 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            R ++V + GG L I++  ++NHV+MTG A + + G+  
Sbjct: 235 ARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQYT 273


>gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
 gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
          Length = 282

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 20/289 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM G+GN  + I++   H   + +   A+     +     D ++LI      ++  
Sbjct: 1   MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTSCAI-- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115
            +RI N DGSE ++CGNG+RCV ++      +  K+F+ ET+ G + A    D     G+
Sbjct: 59  KMRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118

Query: 116 ISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++++MG+P L  + IP+    DK +  ++                VSMGNPHA+ FVE  
Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDKPVVGEKLEANGE----TVQVTAVSMGNPHAVMFVEQ- 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + S G ++ KH  F + VN     V S   L  R WERG G+T ACG+ ACA+VV
Sbjct: 174 IEKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGACAAVV 233

Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AS      K    V+V +LGG L I W +N  V M G A+    G + +
Sbjct: 234 ASVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAEYICTGNVFL 282


>gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
 gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
          Length = 282

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 125/283 (44%), Positives = 168/283 (59%), Gaps = 6/283 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM G+GNKI+V D+R    NIT  AI AL+++  THFDQIM IH       D  I I
Sbjct: 4   PFSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQD-ADFRIEI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCV+ +L +     +F  ET  GI+  K   DG ISVDMG P L+
Sbjct: 63  WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  +VS+GN HAIFF+E ++ +  L  +G  
Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            V +  G L I + D+ H+ MTG  + E+ G  +  TG + K 
Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKKD 280


>gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
 gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
          Length = 288

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 123/276 (44%), Positives = 165/276 (59%), Gaps = 5/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R   D +   A  A +      +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVLDLRD--DPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI-SVDMGEPILD 126
           N DGSE  +CGNGMRCV + + S     +  FE+  G+L         I +VDMG P   
Sbjct: 67  NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P  VSMGNPHAIF+V DD++ +DL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWV-DDVHAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +     + +RTWERGVGLT ACGSAACA+ VA+  L +  R V
Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + + GG L I+W + ++HV MTG A  E+EG LD 
Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLDP 281


>gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
 gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
          Length = 272

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 142/287 (49%), Gaps = 28/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + ++             +   +       D ++LI     A  D
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
             +RI N DGSE + CGN  RC+ ++L       + + T +T+ GI    L  ++ +  +
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  D K  P+  +  K                     VSMGNPH + FVE D+
Sbjct: 120 VTVDMGRPA-DMKEQPIEANGQKF----------------TGTTVSMGNPHLVIFVE-DI 161

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 162 KDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVA 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           +    K+ R   + M GG L IEW +  +HV+MTG A + ++G++ I
Sbjct: 222 AALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVII 268


>gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36]
 gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36]
          Length = 269

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 135/275 (49%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +    +D I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDCVTQNVFFNNDNIRRLADRNTGIGFDQLLVVEAPYDPDLDFHYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC   F+  +    +      T  G +  +   DG ++V+MG P L  
Sbjct: 61  DGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELAP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP    F    +++ +I       +     V++GNPH +  V DD+    LA  G+ +
Sbjct: 121 DKIP----FRATKQEKTYILRALDSTVFCG-AVAIGNPHCVTIV-DDIETAPLADLGHAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
           A H  F   VN    +V S +   LR +ERGVG T ACG+ ACA+ V      K  + V 
Sbjct: 175 AHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDVC 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +++ GG L I W      VFMTG A   ++G+++I
Sbjct: 235 IELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269


>gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1]
 gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1]
          Length = 283

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 5/284 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+V DMR     +T  AI +L+ D  T+FDQIM IH       D  I I
Sbjct: 4   PFSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGNG RCV+ +LT     + F  ET  GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     LR+  +VS+GN HAIFFVE+D+ +  L  +G+ 
Sbjct: 124 AKEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F +  N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V + GG L I + +++H+ MTG  K  + G L+  TG + K +
Sbjct: 239 DVNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKKDD 282


>gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
 gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
          Length = 260

 Score =  301 bits (772), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 99/271 (36%), Positives = 142/271 (52%), Gaps = 15/271 (5%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRII 67
            KM G+GN  +VID R     +T   + A++       FDQ+ +I    DA  DA +   
Sbjct: 1   MKMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFY 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS   +CGN  RC+ R++     +   T  T+RGIL+A +   G  S++MG+P L W
Sbjct: 59  NSDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTW 118

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLAR    +D D   I          P    MGNPH  FFVE D    DLA+ G L+
Sbjct: 119 QEIPLARD---VDLDALPIDGA-------PMATGMGNPHCTFFVE-DAEEVDLAAMGALI 167

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP++    N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T R V 
Sbjct: 168 EHHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVR 227

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           + + GG + I+W ++  V+MTG     + G 
Sbjct: 228 IDLDGGTIHIDWRNDG-VWMTGPTAHVFSGV 257


>gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 273

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R           A            D I+L+ +   A +   
Sbjct: 1   MKFTKMQGTGNDFIVIDDRKNSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSIS 117
           + I+N DGS    CGNG+RC  +++     +K +S T ET  G    IL  + +    ++
Sbjct: 59  MIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG P  + + IP AR  +++   R  +    +    N   + MG PH I F    L  
Sbjct: 119 INMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTIIF--GKLED 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y++   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +CASV+A+ 
Sbjct: 172 YNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 231 KLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273


>gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836]
          Length = 279

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 144/284 (50%), Gaps = 15/284 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  + ++      ++ ++ AI   + +     D ++LI   +++  D 
Sbjct: 2   KKLKFTKMHGAGNDYIYMNGFIQEIEDPSALAIRLSNRNFGIGSDGLVLILPSENS--DF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSI 116
            +++ N DGSE + CGN  RCV +++       +K    ET  G+        + +   +
Sbjct: 60  RMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARKV 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEPILD   IP+    + +      I       +     VSMGNPHA+ F    + 
Sbjct: 120 TVDMGEPILDPVQIPVKVDKEPVLNFPLDIDGK----IWEISCVSMGNPHAVVFTTG-IK 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G    KHP+F    N     V   ++L++R WERG G T ACG+ ACA+ VA+
Sbjct: 175 ELDLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAVAA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                 +R +++ ++GG L IEW + NNHV+MTGEA   +EG++
Sbjct: 235 ILNGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278


>gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 270

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 140/284 (49%), Gaps = 28/284 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + ++             +   +       D ++LI     A  D
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
             +RI N DGSE + CGN  RC+ ++L       + + T +T+ GI    L  ++ +  +
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P  D K  P+  +  K                     +SMGNPH + FVE D+
Sbjct: 120 VTVDMGRPA-DMKEQPIEANGQKF----------------TGTTLSMGNPHLVIFVE-DI 161

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 162 KDINLESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVA 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
           +    K+ R   + M GG L IEW +  +HV+MTG A + ++G+
Sbjct: 222 AALTGKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265


>gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 285

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + F K +G+GN  ++ID R          N TS   N  +       D I+L+ + +   
Sbjct: 4   IKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQNSER-G 62

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSI 116
            +  ++I N DGS  + CGNG+RC++++L +  +      F  ET+ G L         I
Sbjct: 63  ANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGDHI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG P  + K IP   S + ++     +   N       + + MGNPH +  ++  + 
Sbjct: 123 RVNMGSPSFEPKAIPTTLSPNNLNIPEGTVTIKNENIT--MYGIGMGNPHMVIILKS-IE 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G        F    N+    V ++  + ++ WERG G T ACG+ ACA +  +
Sbjct: 180 DLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGACACLAVT 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
             L  TN    V + GG L I+W +  + ++MTG A+  + G+L I
Sbjct: 240 SLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285


>gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
 gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
          Length = 271

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 15/276 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           S V F KM G+GN  +VID R     +T   + A++       FDQ+ ++   + A  D 
Sbjct: 7   SGVPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMK--KRADADV 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DG+   +CGN  RC+ R +     +   T  T RGIL+A++   G  S++MG 
Sbjct: 65  HLTFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMGL 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W+ IPLAR  D          P+N      P    MGNPH  FFVE D    DLA+
Sbjct: 125 PQLTWQEIPLARDVD------LDALPINGA----PMATGMGNPHCTFFVE-DAEAIDLAA 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  HP++ +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 174 MGALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGLT 233

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            R+V + + GG + I+W D+  V+MTG     + G 
Sbjct: 234 GRSVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSGV 268


>gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 290

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           + MV F+KM G+GN  +VID        ++   + +  + T   +   D ++ +      
Sbjct: 2   TRMVMFSKMHGLGNDYVVIDESTQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-AG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN--RDG 114
             D   RI N DGSE + CGNG+RC  +F+     ++++    ET+ GI   +     DG
Sbjct: 61  DGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIGDDG 120

Query: 115 SI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           S+    VDMG        IP+     +       +   +         +S+GNPHA+ FV
Sbjct: 121 SVVSSRVDMGTATFKTDQIPMDVGECEFIDRFLPVEGEDIKLT----ALSVGNPHAVIFV 176

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DD    DL   G  +  HP+F E +N+    V     + + TWERG G T ACG+ A A
Sbjct: 177 -DDTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTGATA 235

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           SV+A   L K + +V V + GG L I+ +        +M G+A   ++G L
Sbjct: 236 SVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286


>gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
 gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
          Length = 286

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 16/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAI----NALSTDDNTHFDQIMLIHDFQDAS 59
           + F K  G GN  ++ID R  +      S+ I               D ++ I +  + +
Sbjct: 4   IIFEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILEP-NGN 62

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V++L            +  ET  G+ +A+ N DG 
Sbjct: 63  NHARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYN-DGQ 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ISV MG+PI+D K IP   + DK              F    + V MGNPH IFFVE D+
Sbjct: 122 ISVKMGKPIIDIKSIPT--NIDKKQNFLPAFLFKESNFEYEGYAVGMGNPHLIFFVE-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +   H +F E  N+  +++ + +++ +  WERG G T ACG+ ACA  VA
Sbjct: 179 TKISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  L   N    + + GG L I W      + M+G AKK + G   +
Sbjct: 239 AFNLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSGNYFL 285


>gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
 gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
          Length = 283

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/285 (43%), Positives = 169/285 (59%), Gaps = 5/285 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+V DMR     +T  AI ALS D   HFDQIM I +      D  I I
Sbjct: 4   PFSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS+ ++CGNG RCV+ +LT     ++F  E   GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  
Sbjct: 124 AKEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA +TS +SL+LRTWERG GLT ACGSAACA  VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            V + GG L I + +++H+ MTG  K ++ G L+  TG + K N 
Sbjct: 239 DVNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDNS 283


>gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 289

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/279 (45%), Positives = 175/279 (62%), Gaps = 1/279 (0%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +S + F KM G+GN+I+V+D+R      T+D   A++ D  +HFDQ+M++H  +    ++
Sbjct: 4   ASSLPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTES 63

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DGSE  +CGNGMRCV   L + + RK F  ET  G+L        SI+VDMGE
Sbjct: 64  LVRIYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGE 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   W+ IPLA  F         IGP++   L +P VV++GNPHAIF+V DD+  YDL  
Sbjct: 124 PRFGWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWV-DDVEAYDLGR 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  HP+F E  N+S+A+VTS  SL L+TWERG GLT ACGSAACA+ V++     T
Sbjct: 183 LGPMLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLT 242

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R V V + GG L + W DNN + MTG  + E+EG +D+
Sbjct: 243 ERTVDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDL 281


>gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
 gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
          Length = 288

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 147/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGN HA+ FV DD+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNSHAVIFV-DDVEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 285


>gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
 gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
          Length = 275

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 129/279 (46%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F KM+G+GN  +VID      N+   A+  L+        DQI+L+       VD  
Sbjct: 1   MLRFTKMQGLGNDFVVIDAIHQTVNLDEAALRRLADRHYGIGCDQILLVEPPASDEVDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +  + R     ET  G +V      G + V+MG
Sbjct: 61  YRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRVEMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +PL       DR+R                VS+GNPHA+  V  D+    +A
Sbjct: 121 VPRHAPAEVPLLA-----DRERSVYTVNVEGVDWQFGAVSVGNPHAVITVA-DVDEAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L +H +F E  N+   +V  L    LR +ERG G T ACGS ACA+ V       
Sbjct: 175 RVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVVGILQGT 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
               V + + GG L I W      V+++G A   +EG++
Sbjct: 235 LESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273


>gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
          Length = 267

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 141/274 (51%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R   + NI   AI   +       DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +        P+    L +P  +++GNPHAIFFV D +    L   
Sbjct: 117 KFHWTDIPTSQECDTLHL------PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +   V + GG LLI +  +N + M G     + G
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNG 263


>gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
 gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
          Length = 269

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 122/275 (44%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  ++ID       +    I  ++        DQ++L+        D   RI N 
Sbjct: 1   MHGAGNDFVMIDTISQRIKLRPRDIRRIADRRRGVGCDQVLLVEPPGQPEADFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGNG RC  RF+  R      +   E    ++  +   +  + VDMG P+   
Sbjct: 61  DGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSSLMTLRLRENHEVEVDMGAPLFTP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP  R+    + +    G           V+SMGNPHA+  V +D+    L   G  +
Sbjct: 121 ADIPFRRAETAPEYELTAAGE-----TLRVGVLSMGNPHAVLRV-NDVNDGSLERLGEAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E  N     V     + LR +ERGVG T ACGS ACA+VV    +   +  V+
Sbjct: 175 RSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEACGSGACAAVVYGRRMGWLDDRVT 234

Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           V++ GG L I+W  ++  V MTG     +EG + +
Sbjct: 235 VELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269


>gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
 gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
          Length = 307

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 33/308 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  + +D           +  A            D ++ I+   D S+D 
Sbjct: 1   MFFTKMHGCGNDYVYVDGSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL------VAKENRDG 114
            + + N DGS  + CGNG+RCV +++       +         G        +  +N   
Sbjct: 61  EMEMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVI-VSAGKKKYINLEIGTDNLVF 119

Query: 115 SISVDMGEPILDWKLIPLARSFD-----------------KMDRDRFHIGPVNHLFLRNP 157
           S+ VDMG PIL    +P+A   D                  M         +        
Sbjct: 120 SVKVDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDGKEWKI 179

Query: 158 FVVSMGNPHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
             VSMGNPHA+ F+ +D+    +++   G     + +F    N    +V    ++ +R W
Sbjct: 180 TCVSMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNVHMRVW 239

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKK 273
           ERG G T ACG+  CA+ VA      T+  V+V +LGG +   W  N  + V M G A  
Sbjct: 240 ERGTGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIMEGPATT 299

Query: 274 EWEGKLDI 281
            + G++D+
Sbjct: 300 VFTGEIDL 307


>gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
 gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 20/292 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +VI   D     ++  ++    +     +   D ++ +    D   D
Sbjct: 3   LNFTKMHGLGNDYIVINEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +F+  R+ ++     ET+ G+ V++ N +     SI
Sbjct: 63  IRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKSI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH----LFLRNPFVVSMGNPHAIFFVE 172
            V MG P  + K IP+     K + D F    +      L      VV++GNPHA+ F++
Sbjct: 123 KVFMGAPTFELKDIPMVVEG-KSENDVFLDEEIELKNALLNSVKLSVVNVGNPHAVIFMK 181

Query: 173 DDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           D+          L   G  +  H +F E +N+    + + + + + TWERG G T ACG+
Sbjct: 182 DNNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTTACGT 241

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++G+L
Sbjct: 242 GTTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292


>gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 284

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   
Sbjct: 11  IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RCV  FL     + ++     T +  +  K   D +I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + I +++   K+  + F +  +N        +VS+GNPH +  VE  + +  +  
Sbjct: 131 PSFKLEEISISK---KIVLNNFSVKLINKNLKC--SLVSIGNPHCVIKVES-INNAPVKK 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +  
Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V +LGG L+I+W   N  ++M G A   ++G + I
Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284


>gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
          Length = 269

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 145/277 (52%), Gaps = 14/277 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  +VI+ R  + + +  AI           D ++++        D  +RI N D
Sbjct: 1   MHGLGNDFIVIEARE-NVDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMRIFNAD 57

Query: 71  GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISVDMGEPI 124
           GSE + CGNG RC  +++  R  +K++    ET+ G+++ +      +  S+ V MG PI
Sbjct: 58  GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            +   IP+     K   +   I    +        + +G PH I FV+  L    +   G
Sbjct: 118 FEANKIPVKTDKQKFINEPVKIDGKVYKLT----SIRVGVPHTIVFVKS-LDENMIKELG 172

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L KT R
Sbjct: 173 PKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTER 232

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 233 NVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269


>gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b]
          Length = 277

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+  F        +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE+ +    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVEN-IDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
 gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
          Length = 289

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 142/294 (48%), Gaps = 22/294 (7%)

Query: 1   MQSSMVD---FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHD 54
           M+   +    F KM G+GN  + ++M       + ++  A    +       D ++LI  
Sbjct: 1   MRRGSMRSFSFTKMHGLGNSYIYVNMFKECLTEEELSYIAKRVSNVHTGIGSDGLILICP 60

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-- 110
              A V   +RI N DGSE ++CGNG+RCV ++      ++ + F  ET+ G++ A+   
Sbjct: 61  SDVAPV--KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFV 118

Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNPFVVSMGNPHA 167
              +  S+ ++MG+P L    IP+    D +   +        +        VSMGNPHA
Sbjct: 119 EDGKVNSVEINMGKPRLSRVEIPMIGKEDDIVVSEPIEFEGHTY----YMTGVSMGNPHA 174

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +F+V D +    + S G ++ K   F EG+N+    V +   L  R WERG G+T ACG+
Sbjct: 175 VFYV-DQIEDAPVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGT 233

Query: 228 AACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ACA+VVAS    KT R     V + GG L I W +N  V M G A+    G  
Sbjct: 234 GACAAVVASVLNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAETICTGVY 287


>gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
 gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
          Length = 272

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 130/286 (45%), Gaps = 29/286 (10%)

Query: 5   MVDFAKMEGIGNKILVIDM--RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           MV F KMEG GN  + ++       +        ALS        D +++I    +   D
Sbjct: 1   MVRFTKMEGAGNDYIYVNNLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPGYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
              R+ N DGSE + CGNGMRC  R+   R    R+    +T  G +V +   D +    
Sbjct: 61  FRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGSFA 120

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VD+G P +             +   R       +       VV  G PH + FV DD
Sbjct: 121 GVRVDLGPPRI-------------LGDRRIAAEGREYPVT----VVDTGVPHIVIFV-DD 162

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DLA  G  L +HP F   VN++ A       L  RTWERG GLT ACG+ A A +V
Sbjct: 163 VDAVDLAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGASAVLV 222

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A+    +T RA  V+M GG L +EW +   HVF+TG A+   +G  
Sbjct: 223 AACLKGRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAEFVCDGVF 268


>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
 gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
          Length = 1351

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 144/292 (49%), Gaps = 20/292 (6%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
            + + + F KM G GN  +  +      DN    A+N          D ++L+   + A  
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGVGGDGVILVCRSKVA-- 1125

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-GSI- 116
            D  +R+ N DGSE + CGNG+RCV +F+     + R   T ET+ GI+  K +R  G + 
Sbjct: 1126 DGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHYGEVN 1185

Query: 117  --SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +VDMG  IL+ + IP     D+   +      I    H        VSMGNPH I F+
Sbjct: 1186 GATVDMGAAILEPERIPCTLPADENGRVVDREVEIAGEKHRVT----CVSMGNPHCIVFM 1241

Query: 172  EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             +++   ++   G      P+F E VN    +V    +L +R WERG G T ACG+ ACA
Sbjct: 1242 -NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACA 1300

Query: 232  SVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +VVA+        N  V+V + GG L I + ++  V+MTGEA   +EG + +
Sbjct: 1301 AVVAAVLNGYCPMNEEVTVMLRGGNLTIRYTED-TVYMTGEAVTVFEGDIRV 1351


>gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 267

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 141/274 (51%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R   + NI   AI   +       DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +        P+    L +P  +++GNPHAIFFV D +    L   
Sbjct: 117 KFHWTDIPTSQECDTLHL------PIELEMLSDPVGINVGNPHAIFFV-DSIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +   V + GG LLI +  +N + M G     + G
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263


>gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
 gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
          Length = 284

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/275 (37%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST--DDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+     +   T + I A++   D     DQ++ I   +     A++R
Sbjct: 5   FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG E  +CGNG RCV   L     +    F+T+ G L      +  ++VDMG P L
Sbjct: 65  FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPLA + D   R    +GP++  ++  P  VSMGNPH +FFV+  +        G+
Sbjct: 125 EWSQIPLAEAMDTA-RVELQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F EGVN+  A V S + + L+ WERG GLTAACG+ ACA+ VA+     T+R 
Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             V+   G L IEW + + HV MTG    ++ GKL
Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278


>gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268]
 gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268]
          Length = 275

 Score =  298 bits (763), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 137/290 (47%), Gaps = 34/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++          +    ++        D ++LI     A  DA++
Sbjct: 1   MKFTKMEGLGNDYVYVNAFTEKVENPGELARRIADRHFGVGGDGLILIEPSDKA--DAYM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116
            + N DGSE   CGNG+RCV +++        +R+    ET  GI    +  K+ +    
Sbjct: 59  HMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKDGKMEKA 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
           +VDMGE  LD +L            +   +  ++  F+     + +GNPHA++F+ED+  
Sbjct: 119 TVDMGEVKLDGEL-----------PENIEVRGMSLQFVG----IDVGNPHAVYFLEDNPE 163

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +   DL   G    +HP F + VN    +V S   +  R +ERG G T ACG+ A
Sbjct: 164 LSVSSVSELDLEKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTGA 223

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
            A+VVA   + +     +V +LGG L I +     H FMTG A++ + G+
Sbjct: 224 TAAVVAGILMGRLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGE 273


>gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 269

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNI 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLISGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
 gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
          Length = 286

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 106/266 (39%), Positives = 147/266 (55%), Gaps = 5/266 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN+ILV+D+RG    +      A++      FDQ+M +HD ++   DAF+RI N D
Sbjct: 13  MNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNVD 72

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS   +CGNG RCV  +  +R  ++     T    +  +   +   +VDMG P LDW+ I
Sbjct: 73  GSLSGACGNGARCVA-YALARDGKERLRLATDAARIETRREAETVFTVDMGRPRLDWREI 131

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+R  D        + P           VSMGNPHA+FFV D L    L + G  L  H
Sbjct: 132 PLSREADTR---TVALEPPVAGAPTQFSAVSMGNPHAVFFVPDALAT-PLETLGPKLEHH 187

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F +  N+S A++ +   + LR WERG G T ACGSAACA++VA+     T R   V++
Sbjct: 188 PLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGFTERRARVRL 247

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWE 276
            GG L IEW D++HV MTG  + E+E
Sbjct: 248 PGGDLHIEWRDDDHVMMTGPVEFEFE 273


>gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 269

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 269

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 144/274 (52%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G+  VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEGA-CVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTLSM------PVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT  + L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
 gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
          Length = 275

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 131/279 (46%), Gaps = 9/279 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID+     N+    I  ++        DQ++L+        D   RI N 
Sbjct: 1   MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGNG RC  RF+  +    ++    ET  G +     +DG I+ ++G PI D 
Sbjct: 61  DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      +   D    G            +SMGNPHA+  V D +    +++ G L+
Sbjct: 121 TQIPFQ---PEDSEDNAEYGLTVAGNTHRIGALSMGNPHAVLTV-DSVADAPVSTLGPLI 176

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP F E VN+    + S   + LR +ERGVG T ACGS ACA+ V        + AV+
Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236

Query: 248 VKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIKTG 284
           V + GG L + W   DN+ V++ G     +EG + ++ G
Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275


>gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
          Length = 291

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/293 (38%), Positives = 168/293 (57%), Gaps = 5/293 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M  S + F KM G+GN   V+D R     +T+D  +A++        DQ++++     A 
Sbjct: 1   MAFSHISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D F+RI+N DGSEV +CGN  RCV   + + + R+  T ET  G+L A+ + DG ++VD
Sbjct: 60  -DVFMRILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P   W+ IPLA+           I   +   L  P V ++GNPHAIF+V  D+  YD
Sbjct: 119 MGVPRFGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWVA-DVDAYD 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA+FG  L   P+F E  N+S+A V   +++ LR WERG G+T ACG+AACA+ V++   
Sbjct: 178 LATFGGALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAART 237

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            +T R+V +++ GG + IEW  D++H+ MTG    E+EG L +  G      E
Sbjct: 238 GRTGRSVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGGSLTVARE 290


>gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50]
          Length = 224

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 9/230 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P    F     ++ +I       +    VVSMGNPH +  V DD+    + +
Sbjct: 121 PNFEPSAVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DDVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224


>gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 293

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 140/288 (48%), Gaps = 21/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDAS 59
           M+ F KM G+GN  +++D R     I +D     +            DQ+++I    +A 
Sbjct: 1   MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG---SI 116
            D F++I+N DGS   +CGNG RCV  ++   +       ET   +L A+ +R G    I
Sbjct: 60  -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG   LDW+ +PLA++ D +  D     P            SMGNPHA+ FV DD+ 
Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAPA------LAVCQSMGNPHAVMFV-DDVA 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G  L    +F +  N+SI +        +R WER VG+T ACGS ACA  VA+
Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
                  R   + M GG ++IEW DN      V MTG       G LD
Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279


>gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 128/293 (43%), Gaps = 16/293 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             ++F KM G GN  + +D           AI+   +          LI   +    D  
Sbjct: 1   MKIEFTKMHGAGNDYVYVDCTKEMLP-NPGAISEYVSHRRFGIGSDGLICVCKSDVADFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N D SE + CGNG+RCV +F+  +    + + T ET+ G+    +V +        
Sbjct: 60  MRMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAK 119

Query: 118 VDMGEPILDWKLIPLARSF-----DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           VDMG+P+     IP+           +  +  H          N   +SMGNPH + FV 
Sbjct: 120 VDMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFV- 178

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+   +L   G     H +F EGVN    +V    ++  R WERG G T ACG+ A A 
Sbjct: 179 DDVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAV 238

Query: 233 VVASGCL---HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            VA   L    K    ++V   GG L +    N+HV + G A   ++G +DI 
Sbjct: 239 TVACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDIP 291


>gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603]
 gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603]
          Length = 280

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 146/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          AI A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+    D  ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTREEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYEYK 277


>gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 263

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 148/271 (54%), Gaps = 8/271 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  L++D R     +++  I  L+  +N  FDQ+++I    D++ +  I   N D
Sbjct: 1   MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G E ++CGNG RCV  FL    K K  +  T  GIL + +N + +I++DMGEPI DW+ I
Sbjct: 59  GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+   ++MD     I   ++    + + +S+GNPH IFF  +D+    L   G  +  H
Sbjct: 119 PLS---EEMDPSNVCITLKDNSSF-DGYALSVGNPHIIFF--NDIETDKLKIIGPEIENH 172

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F +  N++ A++    ++ +  WERG GLT ACG+ ACA+ VAS   + T R V++  
Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             G L I+W  NN + M+G      E  + I
Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263


>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1351

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 143/292 (48%), Gaps = 20/292 (6%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
            + + + F KM G GN  +  +      DN    A+N          D ++L+   + A  
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGIGGDGVILVCRSKVA-- 1125

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-GSI- 116
            D  +R+ N DGSE + CGNG+RCV +F+     + R   T ET+ GI+  K +R  G + 
Sbjct: 1126 DGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHYGEVN 1185

Query: 117  --SVDMGEPILDWKLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +VDMG  ILD   IP     D+   +      I    H    N   VSMGNPH I F+
Sbjct: 1186 GATVDMGAAILDPVKIPCTLPADENGMVVNREVDIAGEKH----NVTCVSMGNPHCIVFM 1241

Query: 172  EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             +++   ++   G      P+F E VN    +V    +L +R WERG G T ACG+ ACA
Sbjct: 1242 -NNIDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACA 1300

Query: 232  SVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +VVA+        +  V+V + GG L I +  +  V+MTGEA   +EG + +
Sbjct: 1301 AVVAAVLNGYCPKDEEVTVMLRGGNLTIRYT-DETVYMTGEAVTVFEGDIRV 1351


>gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14]
 gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14]
          Length = 287

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 25/295 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60
           S+ + F KM+G GN  + ++         S A    S        D ++LI      A  
Sbjct: 2   SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWSKYHFKIGSDGLVLIGRPSDPAKA 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------- 111
           D  + I N DGSE   CGN  RC+ ++L  +    ++    ET+ G+ + K +       
Sbjct: 62  DYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDNKET 121

Query: 112 ---RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                 S++VDM EP L+ K       ++        I       + N   VSMGNPH +
Sbjct: 122 GKTEVESVTVDMLEPQLEEK-----AQYNAEVGKNIQIEDR----IFNGTFVSMGNPHYV 172

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            FV +D+   D+A +G+ L  HP F +  N+  A V +   +  R WERG G+T ACG+ 
Sbjct: 173 IFV-NDIDTIDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGITLACGTG 231

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           ACA+ VA+    +  R   + M GG L IEW  +NNH++MTG A   +EG++++ 
Sbjct: 232 ACATAVAAALTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIELP 286


>gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
 gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
          Length = 279

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F KM+G  N  + +D R  G   +I + A    +   +   D I+ I        D
Sbjct: 1   MKLSFTKMQGCANDYIYLDCRASGVPADIAALAQRLSARHFSVGADGIICICAPVTPGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +RI N DGSE Q CGNG+RCV  +L +  +++     +T  G+            V+M
Sbjct: 61  GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSGVKRITRQGAQLWQVEM 120

Query: 121 GEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G        +P +    D +      +       +     +S+GNPH +  VE D+    
Sbjct: 121 GTYSTLPADLPAIHMGEDPLVDQPLTVEGK----VWKVTCISVGNPHCVTVVE-DVDSLK 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L
Sbjct: 176 LEAIGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALTEL 235

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 + + V++ GG L+I       + MTG A   +EG  ++
Sbjct: 236 GICPAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279


>gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli]
 gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli]
          Length = 276

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 139/286 (48%), Gaps = 16/286 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++   +F KM  +GN  +++D        ++  I   +       FDQ++LI   +  S
Sbjct: 1   MKT---EFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQS 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118
              + RI N +G+EV  CGNG  CV R+L  + + +      T+   L       G ++ 
Sbjct: 58  KHFYYRIFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTA 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYH 177
           ++G PI D + IP              I P+   F R    V S+GNPH +  V + L  
Sbjct: 118 NLGLPIFDPEKIPFINPSKA------PIHPLETPFGRFDCCVLSLGNPHCVIQV-NCLEK 170

Query: 178 YDLASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             L   G  L +HP   F +G NL + ++   + +DLR +ERGVG T ACGS ACA+V+A
Sbjct: 171 APLEDLGLYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIA 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              L++  + V V + GG L + W  +++ VF+ G     + G +D
Sbjct: 231 GRLLNRLTKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276


>gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
 gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
          Length = 280

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506]
 gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506]
          Length = 293

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/275 (41%), Positives = 159/275 (57%), Gaps = 3/275 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+R     +      AL+ +D   FDQIM ++  +     AF+RI
Sbjct: 8   PFVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           IN DGSE  +CGNG RC+  +   R       FE++ G+L      +G I+ DMG P   
Sbjct: 68  INADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA             GP     LR P VV++GNPHAIF+V  D+   DL  +G  
Sbjct: 127 WHDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWV-HDIEAVDLGRYGPE 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A+V S + + L+ WERG GLT ACGSAACA+ V++  +  T R V
Sbjct: 186 LEHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +V + GG L+I+W + ++H+ MTG A  E++G+L 
Sbjct: 246 TVTLPGGDLVIDWRESDDHILMTGPAVFEFDGRLT 280


>gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 270

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 139/285 (48%), Gaps = 27/285 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + I+               +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYINCFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           R+ N DGSE Q CGNG+RCV +++     +++  F  ET  GI   K      +   I+V
Sbjct: 59  RMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRITV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P +  + +P          +   +  + + F+     +SMGNPHAI+++ D +   
Sbjct: 119 DMGVPEVTSQ-VP----------EPIWVNGMEYEFIG----ISMGNPHAIYYM-DFIDGL 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     H  F E  N    +V +   + +R WERG G T ACG+ A AS VAS  
Sbjct: 163 DLEAIGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASAL 222

Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
             +T   V V++ GG L I W    + HVFMTG A + +EG+ DI
Sbjct: 223 SGRTAHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267


>gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
 gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
          Length = 280

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 143/284 (50%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23]
 gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23]
          Length = 267

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 131/286 (45%), Gaps = 28/286 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDA 62
           S + F KM G GN  + +D    +      A I           D ++LI        D 
Sbjct: 2   SKIHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE   CGN  RC+ ++L  R           T+ G+    L   +    S+
Sbjct: 62  TMRIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEIRLLTLSGVKVLSLHVTDGFVESV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEP+L+ +                    +      +   VSMGNPH + F  DD+ 
Sbjct: 122 TVDMGEPVLENES-----------------QFLPSRNPGHGTFVSMGNPHYVIFT-DDVD 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G  L  HP F +  N+  ARV +   +  R WERG G+T ACG+ ACA+ VA+
Sbjct: 164 Q--VGEAGPALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATAVAA 221

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               K +R   + M GG L IEW + +NHV+MTG A+   +G++ +
Sbjct: 222 ALTGKASRTSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEIAL 267


>gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105]
 gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105]
          Length = 291

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S+++ F KM G GN  +V+D      +++   I  L+        DQ++++   + A  D
Sbjct: 4   SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLADRHFGVGADQVLVVESSELA--D 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EVQ CGNG RC  +++  +    +   T ET+ GI+  +  +   + V+
Sbjct: 62  FKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWVKVN 121

Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG   L+ + +P       +R    + + R  +     L      V SMGNPH +  ++ 
Sbjct: 122 MGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVGVASMGNPHVVILLDQ 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              +  +   G  L  HP F E VN+    +     + LR +ERGVG T ACG+ ACA+ 
Sbjct: 182 PASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGTGACAAA 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDI 281
           V    +      V V   GG L IEW    ++ V MTG A+  +EG+  +
Sbjct: 242 VVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEFYL 291


>gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 279

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 11/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F KM+G  N  + +D R  G  +NI + +        +   D I+ I   Q A  D
Sbjct: 1   MKLSFTKMQGCANDYIYLDCRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +RI N DGSE + CGNG+RCV  +L +  + +++   +T+ G+        G   V+M
Sbjct: 61  GMMRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVEM 120

Query: 121 GEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G        +P +    + +      +         +   +S+GNPH +  VE D+    
Sbjct: 121 GAYSAMPASLPAVNMGEEPLVDKELTVDGK----TWHVTCISVGNPHCVTVVE-DVDSLK 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L
Sbjct: 176 LEEIGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTEL 235

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                   + V++ GG L I       + MTG A+   EG  ++
Sbjct: 236 GICPAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279


>gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
 gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
          Length = 280

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M       +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K    + ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
          Length = 280

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 144/297 (48%), Gaps = 30/297 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59
           M++ M +F KM+G GN  + +D         +  AI           D ++LI   + A 
Sbjct: 1   METDM-EFTKMQGTGNDYVYVDCFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSRTA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKEN 111
            D  + + N DGS+   CGNG+RCV +++         +++ T ET+ GI    L  ++ 
Sbjct: 59  -DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKRTITVETLAGIKTLELEIEDG 117

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +  S++VDMGE  L  +L            +   +    + F+     +++GNPHAI++V
Sbjct: 118 KAVSVTVDMGEAALTSRL-----------PEDITVDGKEYRFVG----INVGNPHAIYYV 162

Query: 172 EDDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            D +   DL   G     H  F  + VN     V   + L++R WERG G T ACG+ A 
Sbjct: 163 -DQVDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACGTGAT 221

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           ASV+AS  +  T     V + GG L+I +  ++ H+FMTG A + + G +DI    +
Sbjct: 222 ASVMASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDIPEEIY 278


>gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 280

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FVE D+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFVE-DVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3]
          Length = 279

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 121/284 (42%), Gaps = 11/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F KM+G  N  + +D R  G  +NI + +        +   D I+ I     A  D
Sbjct: 1   MKLSFTKMQGCANDYIYLDCRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
           A +RI N DGSE + CGNG+RCV  +L +  M +     +T+ G+       +G   V+M
Sbjct: 61  AMMRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G        +P       M        P+     L     +S+GNPH +  V  ++    
Sbjct: 121 GAYTAMAAALPAV----NMGEGPLVDLPLEVEENLWRVTCISVGNPHCVTIVP-EVDSLK 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L
Sbjct: 176 LEQIGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTEL 235

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                   V V++ GG L I       + MTG A+   EG  ++
Sbjct: 236 GICPAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279


>gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
 gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
          Length = 280

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 29/290 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++  G   DN+   A+           D ++ I   + A  D  +
Sbjct: 1   MRFTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE-NRDGSIS--- 117
           RI N DGSE   CGNG+RC+ +++  +   +     T ET  G+   +   RDG +    
Sbjct: 59  RIFNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVL 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L   +  +A                          VS+GNPHA+ F    +  
Sbjct: 119 VDMGRPELSPPVKLMAAGR-----------------TWQAVPVSVGNPHAVVFC-GGVDA 160

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +LA  G  L +HP F + VN+  A+      L +R WERG G T ACG+ ACA++ A+ 
Sbjct: 161 LNLAELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAA 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                +R  +V + GG L + W  +N H++MTG A   +EG++ ++   +
Sbjct: 221 RAGLVSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLENENY 270


>gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 280

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
 gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
          Length = 290

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 117/274 (42%), Positives = 158/274 (57%), Gaps = 2/274 (0%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM GIGN+IL++D+RG    +T     A++      FDQ+M++ D +     AF+ I N
Sbjct: 10  VKMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFN 69

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS+  +CGNG RCV   L     R     ET  G L  +   +   SV+MG P L   
Sbjct: 70  ADGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAA 129

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL+R            GP +   L+NP VV+MGNPHAIFFVE D+  YDLA+ G +L 
Sbjct: 130 EIPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLE 188

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
             P+F E  N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+     T R  +V
Sbjct: 189 HDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATV 248

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            + GG L I W + ++ V MTG    E+E +LD 
Sbjct: 249 ALPGGELDIFWRESDDMVVMTGPVAFEFETRLDP 282


>gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 280

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 147/286 (51%), Gaps = 23/286 (8%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M    + I+ + +  ++      +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNM--FEEQISEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHAI FV DD+   
Sbjct: 117 MGAPRLTRAEIPMLGEDETPFIRENFLYNNHRYAFT----AVSMGNPHAIIFV-DDVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             K  R   ++V + GG L+I W +   V M G A+    G  + K
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYEYK 277


>gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
 gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
          Length = 280

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M       +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE ++CGNG+RCV ++      ++   F  ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676]
 gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676]
          Length = 280

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012]
 gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 280

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
 gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
          Length = 286

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           M    + F+KM GIGN   +ID         +D   A     + HF    D ++ +    
Sbjct: 1   MDLKGLKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110
            A  D   R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI    +  + 
Sbjct: 61  VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +      VDMG        IP+A   D+       +         N   +S+GNPHAI F
Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D++   D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A 
Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280
           ++ ++   L   +  V + + GG L    ++       FM G A+  ++G++ 
Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEIQ 286


>gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
 gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
          Length = 301

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS----TDDNTHFDQIMLIHDFQDASVD 61
           +   KM G+GN  L +D          +           +     D ++L+   ++A   
Sbjct: 15  LRLTKMHGLGNNYLFLDGLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115
             +RI N DGSE + CGNG+RC+ R +  R   + + FT ET  G +  + +       +
Sbjct: 75  FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134

Query: 116 ISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P L+   IP+A    ++       +             +SMGNPH      DD
Sbjct: 135 VTVDMGVPRLERGAIPMAGPAGERAVEVPLEVEAAGERRTFTVTALSMGNPHC-VVFVDD 193

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DLA  G     HP F + VN    +V S + + +R WERG G T ACG+ ACA  V
Sbjct: 194 VAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGPTLACGTGACAVAV 253

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A     +T R V+V++ GG L I W ++ HV+MTG A    +   D +
Sbjct: 254 AGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPAAYIADVTYDPR 301


>gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
 gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
          Length = 280

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M       +++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 277


>gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4]
 gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4]
          Length = 303

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 145/299 (48%), Positives = 195/299 (65%), Gaps = 6/299 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
            + V+FAKM G+GNKILV+DMRG  D +   A  AL+ +  THFDQIM IHD + A   A
Sbjct: 2   GNRVEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I IINCDG+  Q+CGNG RCVV+ L++    K+FTF+T+ GIL A E+ D ++SVDMG 
Sbjct: 62  YIDIINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGS 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP++   L +P V+SMGNPHA+F+V+ D   YDL  
Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLER 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HP+F E  N+++A+VTS  ++  RTWERG GLT ACGSAACA+ V++    + 
Sbjct: 182 FGPLLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRA 241

Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKK-NEDDEA 295
            R V++ +        L IEW + + HV MTG A+ EW G+LD +TG W ++     EA
Sbjct: 242 ERKVTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQAGHEA 300


>gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 280

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 277


>gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
              ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D
Sbjct: 8   KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+
Sbjct: 68  FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M EP   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  
Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLINENLICN--LVSIGNPHCIIKVQS-IKNAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V      
Sbjct: 182 VNIIGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
          Length = 278

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 142/280 (50%), Gaps = 15/280 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           +S + F KM G GN  +VID RG    +++    AL        FDQ+  I D +    D
Sbjct: 7   TSGLGFMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHE--GAD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RCV  ++   + R +    T RG L A    DG +SV+MG
Sbjct: 65  FALDFWNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPLAR           + P +      P  V MGNPH IFFVE D    DLA
Sbjct: 125 APQLLWSEIPLARD----------VVPDSLPLAGAPAAVGMGNPHCIFFVE-DAEAVDLA 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +   P+F E  N+  A + + + L LR WERG G+T ACGS ACA+ VA+     
Sbjct: 174 GQGAAVETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T R V ++M GG L ++W ++  V+++G     +EG+L  
Sbjct: 234 TGRQVVLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRLSP 272


>gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
          Length = 286

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           M    + F+KM GIGN   +ID         +D   A     + HF    D ++ +    
Sbjct: 1   MDLKGLKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110
            A  D   R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI    +  + 
Sbjct: 61  VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +      VDMG        IP+A   D+       +         N   +S+GNPHAI F
Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D++   D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A 
Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280
           ++ ++   L   +  V + + GG L    ++       FM G A+  ++G++ 
Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEIQ 286


>gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31]
 gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31]
          Length = 289

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 9/280 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-------NTHFDQIMLIHDFQDASV 60
           F KM G+GN  +VI+      + T++ I A++              DQ++ I   +    
Sbjct: 5   FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A++R  N DG E  +CGNG RCV   L    ++ S  F+T+ G L  K   D  ++VDM
Sbjct: 65  SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA   D +  +   +GP++   +  P  VSMGNPH +FFV+  +     
Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  HP+F EGVN+  A + + + + L+ WERG GLTAACG+ ACA+ VA+    
Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            T+R   V+   G L IEW + + HV MTG    E+ GKL
Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKL 283


>gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
 gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
          Length = 280

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+  V DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVILV-DDVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYEYK 277


>gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
              ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D
Sbjct: 29  KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 88

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+
Sbjct: 89  FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 148

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M EP   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  
Sbjct: 149 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAP 202

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V      
Sbjct: 203 VNIIGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 262

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 263 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
 gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 17/282 (6%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           MQ    + F KM G+GN  +V+D R     +T     AL+       FDQ+ +I      
Sbjct: 18  MQKDTGLPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVI---SQG 74

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             DA +   N DGS   +CGN  RC+ RFL     +      T RG L A +  +G  +V
Sbjct: 75  QRDAHLTFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAV 134

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P L+W+ IPLA + D ++                P    MGNPH  FFVE D    
Sbjct: 135 NMGQPQLEWQDIPLAEAMDTVEL----------PIEGGPSATGMGNPHCTFFVE-DAEAI 183

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L  FG     HP++ E  N+ +  VT  + L +R WERGVG T A GS++CA+ VA+  
Sbjct: 184 PLEQFGPRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAAR 243

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              T R V + + GG L I+W ++  V+MTG     ++G L 
Sbjct: 244 RGLTGRKVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVLT 284


>gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
 gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
          Length = 281

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDAS-VDA 62
            V F KM+G GN  + +D +          AI   +       D ++LI    D    D 
Sbjct: 6   TVHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADY 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------RDG 114
            +RI N DGSE   CGN  RC+ ++L  +   ++ +   ET+ GI + K +         
Sbjct: 66  SMRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVK 125

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           S++VDM EP L+     +  S  + D  +F               V MGNPH + FV DD
Sbjct: 126 SVTVDMLEPKLENPEQFIGPSVLEADGRKFE-----------GTYVCMGNPHFVTFV-DD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+A +G +L +   F +  N+  A+VT  + +  R WERG G+T ACG+ ACA+ V
Sbjct: 174 IDTIDIAHYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           A+   ++T R  S+ M GG L IE+ + ++HV+MTG A   +EG++++
Sbjct: 234 AAALTNRTGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281


>gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
              ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D
Sbjct: 8   KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+
Sbjct: 68  FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M EP   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  
Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-VKNAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V      
Sbjct: 182 VNIIGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
 gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
          Length = 280

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA---LSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+ A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 234 KMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYEYK 277


>gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 223

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 9/229 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + IP    F+  ++   +   V+   +     VSMGNPHA+  V DD+ +  +
Sbjct: 121 GPPRFVPEEIP----FEAAEQAISYTVDVDGQNIE-MAAVSMGNPHAVLRV-DDINNAPV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              G  +  HP F   VN+    V   +   LR WERG G T ACG+ A
Sbjct: 175 HELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223


>gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
 gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
          Length = 278

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 123/276 (44%), Gaps = 11/276 (3%)

Query: 8   FAKMEGIGNKILVIDM--RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +V++       +++++ A +          DQ +++   + A  +  + 
Sbjct: 6   FTKMHGCGNDFIVVNTFRETVPEDLSALAQDMCQRRFAVGADQFIILGSAESADANFRMD 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I+N DGS+V+ CGN +RC   +      ++      ET+ GI  A    DG++ + +  P
Sbjct: 66  ILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAVAVP 125

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 + L           F        +      VS+GNPHA+ +V D++   +L   
Sbjct: 126 STTIVDVGLDSEHP-----LFGTPLSAEQYTFPMTAVSVGNPHAVTYV-DEIDLLNLEKI 179

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L   H +F    N+   +V     +++R WERG G T ACGS ACA  VAS       
Sbjct: 180 GPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVASVLHGVAK 239

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
             + V + GG L IEW      V+M+G A   ++  
Sbjct: 240 SPMKVSLKGGDLEIEWEGRGKPVYMSGSASFVFDAT 275


>gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061]
 gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC
           35061]
          Length = 286

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 20/293 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF----DQIMLIHDFQ 56
           M    + F+KM GIGN   +I+         +D   A     + HF    D ++ +    
Sbjct: 1   MDLKGLKFSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKE 110
            A  D   R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI    +  + 
Sbjct: 61  VA--DIGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLEN 118

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +      VDMG        IP+A   D+       +         N   +S+GNPHAI F
Sbjct: 119 DEPVLFKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLDT----TFNTTAISVGNPHAIIF 174

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V D++   D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A 
Sbjct: 175 V-DNIDEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGAT 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD 280
           ++ ++   L   +  V + + GG L    ++       FM G A+  ++G++ 
Sbjct: 234 STAISGFKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEIQ 286


>gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 279

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 132/284 (46%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  +  +            A+       +   D I+LI   + A  DA +
Sbjct: 1   MKFWKMHGIGNDYIYFNCFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV ++L      ++ +   ET+ GI    L  +      + V
Sbjct: 59  RMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL+   IP+    D +      I  V +    N   VSMGNPH      DD+   
Sbjct: 119 DMGAPILEPAKIPVDLEGDVIINHELXIEEVAY----NITCVSMGNPHC-VVFVDDVDDI 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G L   + +F + VN    +  +  +  +R WERG G T ACG+ ACA  VA   
Sbjct: 174 ELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACAVAVACVL 233

Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               K N  +++ + GG L I +  +  +FMTG A K + G ++
Sbjct: 234 NGYAKKNEDITIILKGGELKIRYT-DETIFMTGTATKAFSGDVE 276


>gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 288

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 16/285 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
            + F KM+  GN  + ID    +     +    +S        D ++LI        D  
Sbjct: 4   TMKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           +R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I 
Sbjct: 62  MRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIR 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            D+GEP L+ K+IP+  + D+       +         +   VS GNPH   FV D +  
Sbjct: 122 ADIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVAD 176

Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +VVA 
Sbjct: 177 LDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAG 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
               +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 237 VLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281


>gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
          Length = 278

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 143/282 (50%), Gaps = 16/282 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + T+    AL        FDQ+  I D      
Sbjct: 6   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 64  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 123

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+ +  D      GP           V MGNPH +FFVE D+   DL
Sbjct: 124 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DVEAVDL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 173 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T R V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 233 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 273


>gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
              ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D
Sbjct: 29  KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 88

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+
Sbjct: 89  FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 148

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M EP   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  
Sbjct: 149 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAP 202

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V      
Sbjct: 203 VNIIGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 262

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 263 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286]
          Length = 280

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             + F KM+G GN  + ++      DN +  A+   +       D ++LI        D 
Sbjct: 2   KKLKFTKMQGAGNDYIYMNGFTQQIDNPSELAVRLSNRHFGIGSDGLVLILPSDI--CDF 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +++ N DGSE + CGN  RCV +++       +K  T ET  G+         +    +
Sbjct: 60  RMQMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKV 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEPIL   LIP+  + + +      I       +     VSMGNPHA+ F++  + 
Sbjct: 120 TVDMGEPILAPTLIPVRVAEEPVLEYPLDIDGK----IWKISCVSMGNPHAVVFMKG-IK 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G     +P+F    N     V    +L++R WERG G T ACG+ ACA+ VA+
Sbjct: 175 DLDLPVLGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              +  +R +++ +LGG L IEW   NNHV+MTGEA   +EG+L
Sbjct: 235 VLNNHCDRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278


>gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
              ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D
Sbjct: 8   KKKINFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+
Sbjct: 68  FHYRIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVN 127

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M EP   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  
Sbjct: 128 MNEPDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V      
Sbjct: 182 VNIIGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQ 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 242 KLLSDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
 gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
          Length = 279

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 137/287 (47%), Gaps = 17/287 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60
             ++F KM GIGN  + ID       +               +   D I+LI   + A  
Sbjct: 1   MTLNFTKMHGIGNDYIYIDCFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDG 114
           D  +R+ N DGSE + CGNG+RCV ++       K      ET+RG+L A    K +   
Sbjct: 59  DVTMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEVD 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           S+ ++M  PIL+   IP       +  +        + F      VSMGNPH + FV DD
Sbjct: 119 SVEINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYFT----CVSMGNPHCVIFV-DD 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  +   G+ +  +PMF    N+   +V +   +  RTWERG   T ACG+ A A  V
Sbjct: 174 VKNMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVCV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A     +T+  +   +LGG L++ + DNN VFM GEA+  + G +++
Sbjct: 234 AGFISKRTDNIILNHLLGGDLILTYKDNN-VFMKGEARYAYRGYVEL 279


>gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 249

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 142/256 (55%), Gaps = 17/256 (6%)

Query: 35  INALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-- 92
           +   +       D ++ I   +++  D  +RIIN DGSE + CGN +RCV +++      
Sbjct: 1   MRLCNRHFGIGADGLVYILPSKES--DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLV 58

Query: 93  --KRKSFTFETI-RGI----LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145
             +    T +TI  GI    +  K+ +  ++ VDMGEPIL+   IP   + + + +    
Sbjct: 59  EHQNDEITIQTIGAGIQRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVE 118

Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205
           +      F      VSMGNPH + +V+D +   +L  +G LL  HP+F + +N+  A V 
Sbjct: 119 VNGRRFQFT----AVSMGNPHCVIYVDDAV-TMNLHEWGPLLEVHPLFPKKINVEFATVQ 173

Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNH 264
           S + + +R WERG G T ACG+ ACA++VAS   + T+R  ++ + GG L IEW++ +NH
Sbjct: 174 SRDRVIMRVWERGAGPTLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNH 233

Query: 265 VFMTGEAKKEWEGKLD 280
           V+MTG A + ++G+L 
Sbjct: 234 VYMTGPAAEVFQGRLS 249


>gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 284

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID    +     +    +S        D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I  
Sbjct: 59  RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L+ K+IP+  + D+       +         +   VS GNPH   FV D +   
Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVADL 173

Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +VVA  
Sbjct: 174 DVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 284

 Score =  292 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID    +     +    +S        D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE + CGN +R V +++       +     ET+ G+    L   +    +I  
Sbjct: 59  RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L+ K+IP+  + D+       +         +   VS GNPH   FV D +   
Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDK----TFHITAVSWGNPHCAMFV-DSVADL 173

Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +VVA  
Sbjct: 174 DVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
 gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
          Length = 288

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 144/288 (50%), Gaps = 21/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN+ + ++        + + + +I           D ++LI     A  D 
Sbjct: 1   MKFTKMHGLGNQYIFVNQFEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE------NRDG 114
            +RI N DGSE ++CGNG+RCV ++      + + S T ET+ GI+ A        N   
Sbjct: 59  QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118

Query: 115 SISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            ++VDMG P L+ K IPL       + ++   +    H        VSMGNPHA+FFV +
Sbjct: 119 RVTVDMGVPRLEPKEIPLLGTEKTPVIKEGIEVDNARHE----MTAVSMGNPHAVFFV-N 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            + +  L + G  + KHP F + VN+   +  S   +  R WERG G+T ACG+ ACA+V
Sbjct: 174 SIENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAV 233

Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           VA+      K    V V + GG L I W  ++ V+MTG A+    G+ 
Sbjct: 234 VAAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAETICIGEY 281


>gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
 gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
          Length = 279

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 142/282 (50%), Gaps = 16/282 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + T+    AL        FDQ+  I D      
Sbjct: 7   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 65  DCALDFWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+ +  D      GP           V MGNPH +FFVE D    DL
Sbjct: 125 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DAEAVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 174 AGRGASVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T R V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274


>gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 268

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 129/287 (44%), Gaps = 28/287 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
             ++F KM G GN  + ++                S        D ++LI   +    D 
Sbjct: 1   MKIEFTKMHGAGNDYIYVNTLKYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE   CGN  RCV ++L       +K    ET+ GI    L  +     S+
Sbjct: 59  SMRIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P                 RD   +   N    R    V+MGNPH + F   D+ 
Sbjct: 119 TVDMGAP-----------------RDIRTVDLGNGYLFREGTTVNMGNPHLVIFT-HDVS 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL S G  +  HP+F   VN+  A++    ++ +R WERG G+T ACG+ ACA+ VA+
Sbjct: 161 AIDLLSEGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAA 220

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
               +      + M GG L IE+   N+ + MTG A K ++G +++ 
Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTINMD 267


>gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
 gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
          Length = 276

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 142/280 (50%), Gaps = 9/280 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + F KM G+GN  +VID    + N++   I  ++  +    FDQ +L+   Q   +D 
Sbjct: 1   MTLRFTKMHGLGNDFIVIDGINQNINLSPQQIAIMAQRNTGIGFDQCLLVESSQQEGIDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV  CGNG RC+  F+       +   T  T    +    N D S+ VDM
Sbjct: 61  NYRIFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L  + IPL  + ++ D+    +     ++L     +S+GNPHA+  V  +L+   +
Sbjct: 121 GIPKLAPRDIPL-LTQEQSDQYVLELSNNESIYL---HALSVGNPHAVLLVP-ELHRAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  ++ HP F E VN+   ++ + + + LR +ERG G T ACGS A A+       +
Sbjct: 176 LSLGKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYY 235

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           K ++ + V + GG LLI+W + N  + +TG A   +EG L
Sbjct: 236 KMDKHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275


>gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
 gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
          Length = 296

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 14/283 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F KM G GN  + +D               +S        D ++ I     A  D 
Sbjct: 1   MKMKFTKMHGCGNDYVYVDCMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +R+ N D SE + CGNG RC+ +++  +   ++ + T ET+ GI    +  ++ +    
Sbjct: 59  RMRMFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLA 118

Query: 117 SVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            VDMG+ ++    +P+    +  +D+     GP    F      VSMGNPH + FVE D+
Sbjct: 119 EVDMGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVE-DV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G ++   P+F E  N+   ++     +  R WERG G T ACG+ ACA    
Sbjct: 178 ETAPVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYT 237

Query: 236 SGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
              L K  +    + V+  GG L +   + + + + G A   +
Sbjct: 238 CVTLGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPATTVY 280


>gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 286

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +V+D       +T D I  +         D I++   +     D  +RI
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFELTQDLIKKICDVHYGIGSDGILV--KYNSDVADFKLRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS------ISV 118
            N DGSE +  GNG+R   +FL     + ++ FT ET  GI+ AK            I+V
Sbjct: 65  FNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKIITV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I + K IP+    ++   ++  +G            VS+GNPH +  ++++L   
Sbjct: 125 DMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEFEV----SCVSVGNPHCVI-IKENLDEE 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C        
Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              T+R + +KM+GG L I   ++ ++ MTGE ++   G + 
Sbjct: 240 KGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYIS 281


>gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
 gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
          Length = 283

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  ++I              A            D +M++ +   A  D  
Sbjct: 3   IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKESSVA--DVQ 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117
           ++  N DGSE   CGNG+RC  +F+     +K++ FT ET+ G+   +    E +  S+ 
Sbjct: 61  MKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVSSVR 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+ +LD K IP+     +   ++  I    +        V +G PH I F+E  L  
Sbjct: 121 VNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI----STVLLGVPHTIIFME-TLDL 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G ++  H +F E  N++ A++ +  ++ +RTWERG G T ACG+   +    + 
Sbjct: 176 DRVKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVCGIAN 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L      V V++ GG L IE      ++M G AK   +G  
Sbjct: 236 HLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKGVY 277


>gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
 gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
          Length = 276

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 140/282 (49%), Gaps = 16/282 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + T+    AL        FDQ+  I D      
Sbjct: 4   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R      T RG L A+   DG ++V+M
Sbjct: 62  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+ +            +      P  V MGNPH I+FVE D    DL
Sbjct: 122 GAPQLLWSEIPLARAMET----------DSLPLEGTPSAVGMGNPHCIYFVE-DAEAVDL 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 171 AGRGAAVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T R V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 231 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 271


>gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083]
 gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083]
          Length = 273

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 139/276 (50%), Gaps = 15/276 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
            + + F KM G+GN  +V D R     +T   + A++       +DQ++ I +   A  D
Sbjct: 6   GNKLPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTA--D 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RC+  +  +R  ++  +  T RG+L A +   G I V+MG
Sbjct: 64  IELVFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMG 123

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P+ DW  +PLAR  D ++                P   SMGNPH  FFV +D+   +L 
Sbjct: 124 QPMTDWHEVPLAREMDTLEL----------PIEGKPTATSMGNPHCTFFV-NDVDAINLE 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG  +  HP+F E  N+ IA++     + +R WERGVG+T A GS++CA  VA+     
Sbjct: 173 AFGPTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAATRRGL 232

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              + ++ + GG + I+      V MTG     ++G
Sbjct: 233 IGGSATLTLDGGEIRIKILPTG-VHMTGTWAHVFDG 267


>gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
 gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
          Length = 267

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 27/284 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + +D       N +  AI           D ++LI     A  D  +
Sbjct: 1   MKFVKMQGAGNDYVYVDCFKEKIKNPSEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            + N DGS    CGNG RCV ++      +K ++FT ET  GI    +  K+ +   I+V
Sbjct: 59  DMYNADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGIKYIKVEPKDGKAEYINV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176
           +MG+ ++  +             ++  I      F+     V +GNPHA+++++  + L 
Sbjct: 119 NMGKAVITSEF-----------PEKILINGEEKEFIG----VDIGNPHAVYYIDSLEKLQ 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           + DL   G    KH  FS+ VN     +   +++ +R WERG G T ACG+ ACAS  A+
Sbjct: 164 NMDLNRVGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACASAFAT 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 + +V V +LGG L I   +N+ ++M G+A+  + G+++
Sbjct: 224 MKKGACDTSVRVHLLGGDLDIS-LENDEIYMRGKAEYVFTGEIN 266


>gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 269

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   RI N 
Sbjct: 1   MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           +G+EV+ CGNG RCV  FL     + ++     T +  +  K   D +I V+M EP    
Sbjct: 61  NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + I +++   K+  + F +  +N        +VS+GNPH +  VE  + +  +   G LL
Sbjct: 121 EEISISK---KIVLNNFSVKLINKNLKC--SLVSIGNPHCVIKVES-INNAPVKKIGELL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +     V 
Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V +LGG L+I+W   N  ++M G A   ++G + I
Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269


>gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
 gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
          Length = 268

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 28/287 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
             ++F KM+G GN  + ++      +         S        D ++LI   +    D 
Sbjct: 1   MKIEFTKMQGAGNDYIYVNTLKYPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETG--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSI 116
            +RI N DGSE   CGN  RCV +++       +K    ET+ GI    L  +     S+
Sbjct: 59  SMRIFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG P                  D   +   N    R    V+MGNPH + F   D+ 
Sbjct: 119 TVDMGAPC-----------------DIRTVDLGNGYLFREGTAVNMGNPHLVIFT-HDVS 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL S G  +  HP+F   VN+  A+V    ++ +R WERG G+T ACG+ ACA+ VA+
Sbjct: 161 AIDLLSEGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAA 220

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
               +      + M GG L IE+   N+ + MTG A K ++G +++ 
Sbjct: 221 AFTGRGKGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTINMD 267


>gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
 gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
          Length = 274

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 135/285 (47%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +DF KM+G GN  +VI D+              L         D I+L+     A  D  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEETLAKNLCHRKFGIGADGILLVRKSSVA--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116
           + IIN DGS    CGNG+RC  R++  +  +K+     ET  GI +A    +       I
Sbjct: 59  MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEVLGI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +++MG      K IPL+ + +K+     +I    +           G PH I     ++ 
Sbjct: 119 TINMGNFSFQPKDIPLSIN-EKIINKDININSTEYKITSMKL----GVPHTIVMC--NID 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+   G  + KH +FSEG N++   V    ++ ++TWERG G T ACG+ +CASVVAS
Sbjct: 172 DVDVTE-GKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASVVAS 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L        V + GG L IE    + VFMTG A+  +EGK++I
Sbjct: 231 NTLGYIGNRCKVIVPGGELFIEV-KGDIVFMTGPAEIVFEGKINI 274


>gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
 gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
          Length = 273

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R    N   +  A            D I+L+   + +  D  
Sbjct: 1   MYFTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSIS 117
           + IIN DGS    CGNG+RC  R++     + +     ET  GI +A     +N    I+
Sbjct: 59  MEIINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGE  L+ + IP A   +K+   + +I    ++          G PH +   +  +  
Sbjct: 119 INMGEFSLNPEDIP-ANCKEKIMNKKIYINNKEYIINSMKL----GVPHTVVMCK--IND 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G  + K+ +F EG N++   V   +++ ++TWERG G T ACG+ +CAS   S 
Sbjct: 172 IDIQE-GKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L      V V + GG L I    +N VFMTG A+  + G++++
Sbjct: 231 ILGYVGDKVKVLVPGGEL-ITELKDNKVFMTGPAEIVFTGEINL 273


>gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6]
          Length = 279

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 120/284 (42%), Gaps = 11/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F KM+G  N  + +D R  G  +NI + + +      +   D I+ I     A  D
Sbjct: 1   MKLSFTKMQGCANDYIYLDCRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +RI N DGSE Q CGNG+RCV  +L +    +++   +T  G             V+M
Sbjct: 61  GRMRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           G        +P       M        P+           +S+GNPH +  V DD+    
Sbjct: 121 GGYSAMAAALPAV----NMGEGPLVDCPLTVEGRTWRVACISVGNPHCVTVV-DDVDSLK 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G    KHP F E +N    +V     L +R WERG G T ACG+  CA+V A   L
Sbjct: 176 LEDIGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETWACGTGTCATVAALTEL 235

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                   V V++ GG L+I       + MTG A    EG  ++
Sbjct: 236 GVCPAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279


>gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
 gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
          Length = 290

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D       +T +   AL+        DQI+L+        D   RI N 
Sbjct: 1   MHGAGNDFVVLDGVRQSIELTPERARALADRHFGIGADQILLVDAPLHPEADFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC VRF+  +   +R     E   GI+      DG++SV+MG+   + 
Sbjct: 61  DGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQTRFEP 120

Query: 128 KLIPLARSFDKMD-------RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           +    A  FD  D        D     P+         +V++ NPHA+  V DD+    +
Sbjct: 121 Q----ALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLV-DDVQTAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ VA     
Sbjct: 176 GTIGPLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGIRRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W  +N + M+G A   + G++DI 
Sbjct: 236 LLDSPVLVHTRGGPLTITWS-DNSLRMSGPAVTVFAGQVDID 276


>gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
          Length = 286

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 148/286 (51%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  + ++         ++   A      +     D ++LI   + A  D 
Sbjct: 1   MKFTKLHGLGNDYVYVNCFEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGS 115
            +R+ N DGSE ++CGNG+RCV +++      ++ +FT ET+ G +          R   
Sbjct: 59  RMRVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQ 118

Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +++DMGEP  +   IP+     +++  +   +G            VSMGNPHAI FV D+
Sbjct: 119 VTIDMGEPRFERAAIPMTGIPEEQVREEGIEVGGTAF----TMTAVSMGNPHAILFV-DE 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+  +G ++  H  F E  N+   ++ + E +  R WERG G+T ACG+ ACA+ V
Sbjct: 174 VKEEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A+    KT R V+V + GG L IEW + +N V+MTG A + + G+ 
Sbjct: 234 AAHLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGEY 279


>gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
 gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
          Length = 298

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 120/270 (44%), Gaps = 15/270 (5%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +D R          DAI     +     D ++          D  +RI N DGSE + CG
Sbjct: 26  VDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ-GCDYSMRIYNSDGSEPEMCG 84

Query: 79  NGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           NG+RC+ RF+         +S+   T+ G ++ +   DG ++VDMG P L    +P    
Sbjct: 85  NGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMGPPTLKGAEVPTKLP 144

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLA 188
            +  D        V          VSMGNPH + F E D       +    L   G L  
Sbjct: 145 VNA-DGAVVKQPLVVDGRTWLVTCVSMGNPHCVTFGEQDAKGVIKHVNKLPLEKIGPLFE 203

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            H +F    N    +V S   L +R WERG G T ACG+ ACA VVA+    +  R   V
Sbjct: 204 HHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAAVLEGRAQRRCVV 263

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            + GG L IEW + NNHV+MTG AK  + G
Sbjct: 264 DLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293


>gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
 gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
          Length = 273

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G GN  +V+D R           A    +   +   D I+ + +  + +    
Sbjct: 1   MEFTKMTGNGNDFIVLDDRKGELIGKEKELAQKLCNRHFSIGADGILFVRES-NTNAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A+ 
Sbjct: 172 YDIEE-GKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +   +FM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273


>gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
 gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
          Length = 273

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613]
          Length = 273

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
 gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
          Length = 284

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 15/292 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  ++ID +G   + +  A++          D +MLI     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLILPS--AKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+   DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +       P+N    R    +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLSLVSMGNPHAIHFCTKSVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
               + V +K+ GG L +EW  +N V++TG+A+  +       TG+W+K   
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEIIY-------TGEWLKDET 283


>gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
 gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
          Length = 274

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID    +  IT+  +  L+        DQ+++I       +D   
Sbjct: 1   MKFTKMHGLGNDFVVIDAVTQNVRITASMVRRLADRKTGIGCDQVLVIEPPSAVDIDFNY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG+EV+ CGNG RC+ RF+  R    +KS   +T   ++         ++VDMG 
Sbjct: 61  RIFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LD   IP    F   +    +   VN    R    VSMGNPHA+  V  D+    +A 
Sbjct: 121 PELDPPAIP----FQATEAASLYDIDVNGQVQR-IAAVSMGNPHAVLTVA-DINTATVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F   VN+   ++     + LR +ERGVG T ACGS ACA+ VA+      
Sbjct: 175 LGAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELV 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V+V +  G L I+W  +   + M+G AK  + G++ I
Sbjct: 235 DSPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274


>gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 273

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R  +        A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGNLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKIIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVMLPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 131/288 (45%), Gaps = 29/288 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + +D               +S        D ++LI        D  +
Sbjct: 3   MKFTKMQGIGNDYVYVDCFKEQVKEPGKVSRFISDRHFGIGADGLILICPS--GKADCRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116
            + N DGS+   CGNG+RCV ++          R++ T ET+ GI    L  K+ +  SI
Sbjct: 61  EMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVSI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGE  L   L            +   +   ++ F+     + +GNPHA++++ D + 
Sbjct: 121 TVDMGEGTLTSDL-----------PEDIQVDGKDYRFVG----IDVGNPHAVYYM-DGID 164

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             DL   G     H  F  + VN     V   + L++R WERG G T ACG+ A ASV+A
Sbjct: 165 RLDLEKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVLA 224

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           S  +   +    V + GG L+I        +FMTG A + + G +DI 
Sbjct: 225 SILMGYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDIP 272


>gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
 gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
          Length = 279

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/282 (38%), Positives = 142/282 (50%), Gaps = 16/282 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           SS + F KM G GN  +VID RG    + T+    AL        FDQ+  I D      
Sbjct: 7   SSGLGFMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIRD--QEGA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +   N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+M
Sbjct: 65  DCALDFWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPLAR+ +  D      GP           V MGNPH +FFVE D    DL
Sbjct: 125 GAPQLLWSEIPLARAMET-DSLPLEGGPA---------AVGMGNPHCVFFVE-DAEAVDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+    
Sbjct: 174 AGRGASVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T R V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 234 LTGRQVRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274


>gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065]
          Length = 273

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYFIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT]
 gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT]
          Length = 274

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +DF KM+G GN  +VI D+              L         D I+L+     A  D  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRFGIGADGILLVRKSSVA--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----I 116
           + IIN DGS    CGNG+RC  R++  +  +K+     ET  GI +A    +       I
Sbjct: 59  MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEVLGI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +++MG    +   IPL+ + +K+     +I    +           G PH +     +++
Sbjct: 119 TINMGNFSFEPVDIPLSVN-EKIINKDVNINNKEYKITSMKL----GVPHTVVMC--NIH 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+   G  + K+ +FSEG N++   +   +++ ++TWERG G T ACG+ +CASVVAS
Sbjct: 172 DVDVVE-GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGSCASVVAS 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L        V + GG L IE  D+  VFMTG A+  +EGK+++
Sbjct: 231 NTLGYVGNKCKVIVPGGELFIELKDD-VVFMTGPAEIVFEGKINL 274


>gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
          Length = 273

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L    ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYIGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
 gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
          Length = 275

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           QS  + F KM G+GN  +VID R       +  + A++       FDQ+ +I   ++A  
Sbjct: 9   QSIPLPFMKMHGLGNDFVVIDSRRTGALPDAATVAAIADRHRGVGFDQLAVILPGENA-- 66

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +   N DGS   +CGN  RCV RFL      ++    T   +L A++  D    V+M
Sbjct: 67  DARLVFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRVNM 126

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+LDW  IPLA   D +                +P    MGNPH  FFV  D    DL
Sbjct: 127 GAPVLDWAGIPLAEDVDTLHL----------PVPGDPVATGMGNPHMTFFVP-DAAAVDL 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG     HP++ +  N+ + +V S + + LR WERG G+T A GS +CA+VVA+    
Sbjct: 176 ERFGPAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAARRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            T R V V + GG L I+W ++  V+MTG     ++G 
Sbjct: 236 LTGRRVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDGV 272


>gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
 gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
          Length = 273

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +         
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-GTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIMNKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 278

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 138/284 (48%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM  +GN  + +D        D++ S A            D ++L+     A  D 
Sbjct: 1   MQFFKMHALGNNYVFVDTARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115
            +RI N DGSE +SCGNG+RCV R+   R  +    F+ ET  G++ A+ + D       
Sbjct: 59  GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +++DMGE     + +P  R  D+ +  R   G   +       +VSMGNPH +  V+   
Sbjct: 119 VTIDMGEARFGTEAVP-YRGADRGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                   G ++  HP F E VN+    V + + +D R +ERG G+T ACG+ ACASV A
Sbjct: 174 DVDV-ERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V+V +LGG L IE  D+ HV+MTGEA    EG  
Sbjct: 233 LAKKGLVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGTY 276


>gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
          Length = 278

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 137/284 (48%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM  +GN  + +D        D++ S A            D ++L+     A  D 
Sbjct: 1   MQFFKMHALGNNYVFVDTARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GS 115
            +RI N DGSE +SCGNG+RCV R+   R  +    F+ ET  G++ A+ + D       
Sbjct: 59  GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRL 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +++DMG+P    + +   R  D+ +  R   G   +       +VSMGNPH +  V+   
Sbjct: 119 VTIDMGKPRFGTEAV-TYRGSDQGEDVRVEAGGARY----TGTLVSMGNPHFVTLVDRVD 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                   G  +  HP F + VN+    V + + +D R +ERG G+T ACG+ ACASV A
Sbjct: 174 DVDV-ERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V+V +LGG L IE  D+ HV+MTGEA    EG  
Sbjct: 233 LAKKGFVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGTY 276


>gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
 gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
          Length = 283

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID          +    +S        D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQELKNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DG+E + CGN +R V +++       +     ET+ G+    L   +    +I  
Sbjct: 59  RMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L  K+IP+    D        +         +   VS GNPH   FV D +   
Sbjct: 119 DIGEPRLSTKVIPINTEMDTFVDQPVQVLDR----TFHITAVSWGNPHCAMFV-DSVAEL 173

Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++     S + L +R WERG G T  CG+    +VV + 
Sbjct: 174 DVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTGCATAVVTAI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              K +R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
 gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
          Length = 284

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 150/284 (52%), Gaps = 19/284 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++S A+   + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE ++CGNG+RCV ++      +K +SF  ET+ G++ A+   +     ++++
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNVTI 123

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+     +++  + F +    +        VSMGNPH IF+V DD+  
Sbjct: 124 DMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEIT----AVSMGNPHVIFYV-DDITT 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              KT  N+   V + GG L+I W D  +V MTG A+    G  
Sbjct: 239 LNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAETICTGVY 282


>gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 286

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +V+D       +T   I  +         D I++   +     D  +RI
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKICDVHYGIGSDGILV--KYDSDVADFKLRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS------ISV 118
            N DGSE +  GNG+R   +FL        + FT ET  GI+ AK            I+V
Sbjct: 65  FNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKIITV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I + K IP+    ++   ++  +G            VS+GNPH +  ++++L   
Sbjct: 125 DMGKAIFNAKQIPINTDKEEFISEKITVGDKEFEVN----CVSVGNPHCVI-IKENLDEE 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C        
Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               +R + +KM+GG L I   ++ ++ MTGE ++   G + 
Sbjct: 240 KGLADREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYIS 281


>gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 271

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/270 (31%), Positives = 120/270 (44%), Gaps = 13/270 (4%)

Query: 20  VIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           ++D R          +A      +     D ++ +    +   D  +RI N DGSE + C
Sbjct: 1   MVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYTMRIFNSDGSEPEMC 59

Query: 78  GNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
           GNG+RC  RF+          SF   T  G+++ +   DG + VDMG+PIL    IP   
Sbjct: 60  GNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKL 119

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYDLASFGNLLAK 189
              K +        V+         VSMGNPH + F   +     +    L+  G     
Sbjct: 120 PSTKNEAVVQADLAVDG-STWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEH 178

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           H MF    N     V S   L +R WERG G T ACG+ ACA VVA+    +  R   V 
Sbjct: 179 HEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVD 238

Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           + GG L IEW + +NH++MTG A+  + G 
Sbjct: 239 LPGGPLEIEWREDDNHIYMTGPAEAVFYGS 268


>gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
 gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
          Length = 271

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 132/291 (45%), Gaps = 29/291 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDA 62
             V F KM+G GN  + ++                S        D ++LI   ++   D 
Sbjct: 1   MKVKFTKMQGAGNDYIYVNTFLYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115
            +RI N DGSE   CGN  RC+ +++      ++     ET  GI +     +      S
Sbjct: 59  SMRIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVES 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMG P     + P+                           VSMGNPH + FV D +
Sbjct: 119 VTVDMGIPT---GITPVDLG--------------EGYGYSQGIAVSMGNPHLVIFV-DQV 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G LL  HP+F + VN+  A+V     + +R WERG G+T ACG+ ACA+ VA
Sbjct: 161 SDVRLSEVGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
           +    +  R   V M GG L ++W++ + H+ M G A K ++G+++ +  K
Sbjct: 221 AAFTGRCGRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIEYEPSK 271


>gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 284

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 44/301 (14%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--- 59
           ++F+K  G+GN  ++++               I           D ++++          
Sbjct: 1   MNFSKWTGLGNDFVLLEPGESLDFSSGFEQRIIKLCDRRFGIGADGVVVVTPMDGDGCLV 60

Query: 60  ----------------VDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFT 98
                           VD  +RI N DGSE   CGN  RCV ++     L      K F 
Sbjct: 61  LNGISEGPVSKAVANGVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFN 120

Query: 99  FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
             T  G++      DG + VDMG P      I L         +                
Sbjct: 121 LHTKSGLVRPALLDDGRVCVDMGLPRTFLGSIKLTADCYDFTAE---------------- 164

Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
            VSMGNPHA+ FV DD+    L ++G++L     F +  N+  A+V +   + +R WERG
Sbjct: 165 TVSMGNPHAVIFV-DDIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERG 223

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            G+T ACG+ +CA++VA+    +      V + GG L I+  ++  V MTG A++ ++G 
Sbjct: 224 CGVTMACGTGSCATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGT 283

Query: 279 L 279
           +
Sbjct: 284 I 284


>gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
 gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
          Length = 273

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 133/284 (46%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V +  G L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf]
 gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf]
          Length = 273

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 133/284 (46%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R           A    +   +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----IS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   +L  
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSIT----AFHMGVPHTIIF--GNLDE 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 172 YDIGE-GKNIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V +  G L IE  +N  +FM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPEGKLFIEIKEN-SIFMKGPADICFRGEIDV 273


>gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 288

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +VID       IT D I  +         D I++   +  +  D  +RI
Sbjct: 6   FVKSHGLGNDYIVIDSENITFEITQDFIKKICDVHYGIGSDGILV--KYPSSVADFKLRI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN------RDGSISV 118
            N DGSE +  GNG+R   +FL       ++ FT ET  G++ AK        +   I+V
Sbjct: 64  FNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKVITV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I +   IP+     +   ++  +G   +        VS+GNPH +  ++ +L   
Sbjct: 124 DMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEYEVN----CVSVGNPHCVI-IKKELNEE 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++ ++G+L+  HP+F   +N+   +  S +  ++  WERG G T A GS++CA       
Sbjct: 179 EIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASVLVK 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                  +++KM+GG L I    + ++ MTGE ++   G + 
Sbjct: 239 KGLAKNDITIKMIGGELKITVDKDWNIRMTGEVQEICRGIIS 280


>gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)]
          Length = 281

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I     +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLI-YFKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV  +L    ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG PI   K IP     +K     F    + +       VV++GNPH +  V ++L +
Sbjct: 122 VDMGTPIFTPKNIPFITKTEK-----FFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA+V    
Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKL 279
                +  V VK+L G L I W+    + ++M+G+A   ++G +
Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYI 279


>gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
 gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
          Length = 268

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 136/279 (48%), Gaps = 19/279 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M+G GN  +VID R    N T   I             D I+LI   + +  D  + IIN
Sbjct: 1   MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISVDMGE 122
            DGS    CGNG+RC  R++     + + +   ET  GI +A     +N    I+++MGE
Sbjct: 59  ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L+ + IP A   +K+   + +I    ++          G PH +   + D    D+  
Sbjct: 119 FSLNPEDIP-ANCKEKIMNKKIYINDKEYIINSMKL----GVPHTVVMCKTD--DIDIEE 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + K+ +F+EG N++   +   +++ ++TWERG G T ACG+ +CAS   S  L   
Sbjct: 172 -GKYIEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYV 230

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                V + GG L+ E+  +N VFMTG A+  ++G+ ++
Sbjct: 231 GNKAKVFVPGGELITEF-KDNKVFMTGPAEIVFKGEFNL 268


>gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
 gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
          Length = 278

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 135/275 (49%), Gaps = 9/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D       ++                DQ++ +    +   DA +R
Sbjct: 4   RFIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I N DGS  + CGN MRCV  +L   R    +   ET+ GI+  +     +I+VDMG P 
Sbjct: 63  IYNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQ 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + IPL +  + +D     +G  ++        +SMGNPH +  V  D   ++LA  G
Sbjct: 123 WAGRAIPLDQDGEMIDA-PLEVGGQSYR----MTALSMGNPHGVVRVA-DAEGFELAKVG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H +F   +N  + +V S   + +R WERG G+T ACG+ ACA+ VA        R
Sbjct: 177 PLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACMRQGWVER 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +V + GG L I W +++ V M+G A + + G+L
Sbjct: 237 DCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271


>gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 281

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I     +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLI-YSKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV  +L    ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG PI   K IP     +K     F    + +       VV++GNPH +  V ++L +
Sbjct: 122 VDMGTPIFTPKNIPFITKTEK-----FFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA+V    
Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKL 279
                +  V VK+L G L I W+    + ++M+G+A   ++G +
Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYI 279


>gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
 gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
          Length = 284

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 19/284 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++  A+   + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE ++CGNG+RCV +++     +  +SF  ET+ G++ A+   +     ++++
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNVTI 123

Query: 119 DMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+     +++  + F +       L     VSMGNPH IF+V DD+  
Sbjct: 124 DMGKPRLKRSEIPMVGPEAERVVAEPFEVDGQ----LYEITAVSMGNPHVIFYV-DDINQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G ++ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 AAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              KT  N+   V + GG L I W D  +V MTG A+    G  
Sbjct: 239 LNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAETICTGVY 282


>gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
 gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
          Length = 282

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/261 (38%), Positives = 142/261 (54%), Gaps = 7/261 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+GIGN  +++D+RG    +  DA   L+   +    DQ++ +         A + I N 
Sbjct: 17  MDGIGNAFIIVDLRGGG-TLGEDAARGLAEAAEGVRIDQVIGL---VAEGEGAAMTIFNR 72

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGN  RC+   L          F T  G + A    D  ++VDMG P L W+ 
Sbjct: 73  DGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQD 132

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPLA + +        +GP+++  L  P  VSMGNPH +FFVE D+    L  FG L+  
Sbjct: 133 IPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVE-DVAAQRLDRFGPLIEN 191

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F EG N+S+A V     + LRTWERG GLT ACG+AACA++V++    +T R   V 
Sbjct: 192 HPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADVT 251

Query: 250 MLGGGLLIEWHD-NNHVFMTG 269
           + GG L I W + ++HV MTG
Sbjct: 252 LPGGTLDISWREADDHVLMTG 272


>gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
 gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
          Length = 288

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 148/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       + ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    +P+    +    R+ F      + F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEE 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVAAV 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
 gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
          Length = 290

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++            D ++LI   + A V  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      +  ++F  ET+ G++ A+         S+
Sbjct: 62  KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVADGEVTSV 121

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +VDMGEP L+   IP+     +++  + F I    +        VSMGNPH IF+V DD+
Sbjct: 122 TVDMGEPRLERSAIPMLGPEAERVVAEPFAIAGGEYEIT----AVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 QKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           S    KT       V + GG L I W  +  V MTG A+    G    + G+
Sbjct: 237 SVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288


>gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
 gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
          Length = 293

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 42/296 (14%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76
           +D R   +      DA+   + +     D ++L+        D  + I N DGS  E   
Sbjct: 1   VDNRESPEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59

Query: 77  CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           CGNG+RC+ RF+           +S+   T  G ++     DG + VDMG PIL+   IP
Sbjct: 60  CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119

Query: 132 LARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------DLYHYDLAS 182
                     + +    +     L       VSMGNPH + F E+      DL    L  
Sbjct: 120 TLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTFGEEHEEHLFDLSTLPLEK 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG------------------VGLTAA 224
            G L   H  F +  N     V SL  L +R WERG                   G+T A
Sbjct: 176 IGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLA 235

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           CG+ ACA+ VA+    +  +   V + GG L +EW  ++ HV+M+G A+  + G L
Sbjct: 236 CGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291


>gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 264

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 125/275 (45%), Gaps = 14/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM   G+  ++ID RG  + IT +   AL        F+Q++++ D  D++  A +
Sbjct: 3   LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS + +CG+  R     L       S   +T RG+       D S+SV+MG P 
Sbjct: 61  TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW+ IPLAR  D +                 P   SMGNPH  FFV DDL   D+A+ G
Sbjct: 121 FDWQSIPLARELDSLHL----------PLPGTPAACSMGNPHCSFFV-DDLAPLDIATLG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +   P+F    N+   +V   +++ LR WER   +    GS +CA+ V        + 
Sbjct: 170 PQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLDS 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V   GG + + W     V + G   + + G L
Sbjct: 230 PVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264


>gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
 gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
          Length = 280

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 126/289 (43%), Gaps = 24/289 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60
           + + F KM G GN  +VID           A               D ++ +      S+
Sbjct: 2   TKIKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLHTSL 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK---ENRDGS 115
              +RI N DGSE + CGNG+RC V++      M       ET  GIL  +   E+    
Sbjct: 62  --HMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDGKTL 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG+P+ D K IP A   +       H   V          V+ G PHA+ FV DD+
Sbjct: 120 VKVSMGKPLFDPKKIP-AAGLNNFINKPLHGYEV--------TAVNTGVPHAVIFV-DDV 169

Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              DL      +      F +G+N++  +      L +RT+ERGV G T +CG+ + AS 
Sbjct: 170 NAVDLMKVAPEIRYDLKTFPKGINVNFVQREGHN-LRVRTYERGVEGETLSCGTGSVASA 228

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  L  T    +V   GG L I +  +   +M G A+  +EG++D+ 
Sbjct: 229 AVARYLGYTRDETTVYTAGGQLNISFVSD-IAYMEGPAETVYEGEIDVD 276


>gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
 gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
          Length = 290

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++            D ++LI   + A +  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPL-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      ++ ++F  ET+ G++ A+         S+
Sbjct: 62  KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121

Query: 117 SVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +VDMGEP L+   IP+     +++  + F I    +        VSMGNPH IF+V DD+
Sbjct: 122 TVDMGEPRLERSAIPMVGPKAERVVAEPFTIAGGEYE----MTAVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 QKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           S    KT       V + GG L I W  +  V MTG A+    G    + G+
Sbjct: 237 SVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288


>gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 274

 Score =  282 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 4/266 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R  +  ++ D I  +   +    DQ+++I   ++  +DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV  FL+    +K  T  T  G+L +       +  ++G P  
Sbjct: 61  FYNSDGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVLKSNILGSNLVETEIGTPKT 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPL+++ D        I   N+        V++GNPH +FFV+ D+ ++DL   G 
Sbjct: 121 NWNEIPLSKNLDT-KNLNIKILSKNNTEHIGGAAVNVGNPHIVFFVK-DIENFDLKKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H +F E  N+++A+V +   + ++ WERG GLT ACG+AACAS +A        + 
Sbjct: 179 EIENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKK 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271
             ++   G L I     N V M G  
Sbjct: 239 TDIEFKLGKLSIFIDAKNSVHMKGSV 264


>gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
 gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
          Length = 293

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 42/296 (14%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76
           +D R   +      DA+   + +     D ++L+        D  + I N DGS  E   
Sbjct: 1   VDNRESAEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59

Query: 77  CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           CGNG+RC+ RF+           +S+   T  G ++     DG + VDMG PIL+   IP
Sbjct: 60  CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119

Query: 132 LARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------DLYHYDLAS 182
                     + +    +     L       VSMGNPH + F E+      DL    L  
Sbjct: 120 TLLPGHFDGTVIQKPLEVDGKTWLVT----CVSMGNPHCVTFGEEHEEHLFDLSTLPLEK 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG------------------VGLTAA 224
            G L   H  F +  N     V SL  L +R WERG                   G+T A
Sbjct: 176 IGPLFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLA 235

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           CG+ ACA+ VA+    +  +   V + GG L +EW  ++ HV+M+G A+  + G L
Sbjct: 236 CGTGACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291


>gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
 gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
          Length = 289

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      +   +    +S        D ++LI        D  +
Sbjct: 5   LRFTKMQGIGNDYVYVNGFEERVDNPGELAKRISDRHFGVGSDGLVLILPS--GVADLRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           R+ N DGSE + CGN  RCV ++      + +     ET  GI + +           +V
Sbjct: 63  RMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVRGATV 122

Query: 119 DMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174
           DMGEP+L   LIP+  +    +  D  RF   PV           VSMGNPHA+ F++  
Sbjct: 123 DMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVEVGGRTYAVTAVSMGNPHAVVFMQG- 181

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL   G L   HP+F +  N     V S   + +R WERG G T ACG+ ACA+ V
Sbjct: 182 IDDLDLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTGACAAAV 241

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           AS     T R++ V++ GG L I+W   ++HV+MTG A   ++G   I
Sbjct: 242 ASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDGVYFI 289


>gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
 gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 137/298 (45%), Gaps = 20/298 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----- 57
             +   KM G GN  +VID       ++      L+        DQI+++          
Sbjct: 1   MKLRLTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAA 60

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR 112
                +D   RIIN DG EV+ CGNG RC VRF+  +    R      T  GI+  +   
Sbjct: 61  AGPEGLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLP 120

Query: 113 DGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNP 165
           DG + V+MGEP  D   +P + R      + +  + P+        +F R   +VSMGNP
Sbjct: 121 DGGVEVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNP 180

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+  VE D+    + + G L+  HP F   VN    +V S   + LR +ERG G T AC
Sbjct: 181 HAVQVVE-DVKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLAC 239

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           G+ ACA+ VA       +  V V+ LGG L I W    + VF+ G A   +  ++++ 
Sbjct: 240 GTGACAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPAVTVFSTEVELP 297


>gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
 gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
          Length = 284

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 15/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++        R   + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +       P+N    R    +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
               + V +K+ GG L +EW  ++ V++TG+A+  +       TG+W+K 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281


>gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
 gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
          Length = 300

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 31/301 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++         +  +I           D ++L+   + A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
            I N DGS+ + CGNG+RCV +F+  +  + +   T +T  G+        G     + V
Sbjct: 59  DIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----- 173
           +MG+  +    +P+    +        +      +      VSMGNPHA+ F ++     
Sbjct: 119 NMGKAEIVASKVPVIADTELAVGAPITVKDQAFTYT----AVSMGNPHAVVFTDENPALA 174

Query: 174 ----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
                     DL    +   G     HP F + +N     V    ++++R WERG G T 
Sbjct: 175 NAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGSGETM 234

Query: 224 ACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ACG+ ACA+ VAS    K  R   V+VK+LGG L+IEW +  N V+MTG A   +EG+LD
Sbjct: 235 ACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFEGELD 294

Query: 281 I 281
           +
Sbjct: 295 L 295


>gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1]
 gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1]
          Length = 289

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 15/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN+ +V+D      ++TS++I  +         D ++L         D  +RI
Sbjct: 6   FVKSHGLGNEYIVLDDENIDFSLTSESIKTICDVHFGIGSDGVLL--KVHSEKADFGLRI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD-----GSISVD 119
            N DGSE +  GNG+R   ++L       ++ FT ET  G++ A+           I+VD
Sbjct: 64  FNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLITVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +G+     + IP++   D+   ++  +             VS+GNPH +  V D L    
Sbjct: 124 IGKATFKTEDIPVSIEKDECIGEKIVVDDREFEIN----CVSVGNPHCVIIV-DKLDDEI 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +  +G L+  H +F    N+   +  S + +++R WERG G T A G+++ A        
Sbjct: 179 VKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVMVKR 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             T+R V+V M GG L I   +  ++ MTGE ++   G L 
Sbjct: 239 GITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVLS 279


>gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73]
 gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas
           albilineans]
          Length = 286

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 130/281 (46%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
           + + + F KM+G GN  +V+D+R       +  A+           DQI+ I   ++A+ 
Sbjct: 8   RGARLRFTKMQGAGNDFVVLDLRDGSSPPDAALAVRLADRHFGIGCDQILTIEPARNAAA 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISV 118
            A  RI N DGS    CGNG RCV  +L          F  E+  G    +   D   +V
Sbjct: 68  LASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQFAV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P    + +PL    D +D     +   +  F      VSMGNPHA+  V   +   
Sbjct: 128 AMGVPRFAPEDVPLIGFPDALDEYLLPMHGESVRF----GAVSMGNPHAVLEV-GLVDAA 182

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL +H  F + VN+   +V   + L LR +ERGVG T ACGS ACA+      
Sbjct: 183 PVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAVLMQ 242

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
             + +R V V + GG L ++W H    + M+G A   ++G+
Sbjct: 243 RGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGE 283


>gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
 gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
          Length = 284

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/290 (32%), Positives = 147/290 (50%), Gaps = 15/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +ML+     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLLLPS--AKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D            P+N    R    +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFL 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
               + V +K+ GG L +EW  ++ V++TG+A+  +       TG+W+K 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281


>gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
 gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
          Length = 288

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       + ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    +P+    +    R+ F      ++F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTG----VSMGNPHAVIFV-DDVEE 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAV 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila]
 gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila
           SB210]
          Length = 310

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 31/307 (10%)

Query: 6   VDFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           + F K  G+GN  ++ID R       G  D  +               D +M + +  + 
Sbjct: 3   LHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENESEK 62

Query: 59  S------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK 109
                   D   +I N DG E Q CGNG+RC  R++  +     +K     T  G+L  +
Sbjct: 63  DKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLECE 122

Query: 110 ENRDGSISVDMGEPILDWKLIP----------LARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           E   G    ++G+   +   IP          +  +         H   ++HL     +V
Sbjct: 123 ELSLGLYRTNIGKATAEISKIPANPFNSDAESVVINQPLKINQNLHQQNLSHLSEETHYV 182

Query: 160 --VSMGNPHAIFFVEDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWE 216
             V++GNPH + +V DD+   ++   G  L  +  +F + VN+   ++    +L +R +E
Sbjct: 183 TFVNVGNPHCVIYV-DDVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMRVYE 241

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEW 275
           RG G T ACG+ ACASV A     K + +  V + GG L I    ++  + + G A K +
Sbjct: 242 RGCGETMACGTGACASVFAGILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPAAKVF 301

Query: 276 EGKLDIK 282
           EG +   
Sbjct: 302 EGSIQFP 308


>gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1]
 gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1]
          Length = 284

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 146/290 (50%), Gaps = 15/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++            + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +       P+N    R    +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
               + V +K+ GG L +EW  ++ V++TG+A+  +       TG+W+K 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIY-------TGEWLKD 281


>gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
 gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
          Length = 288

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 149/287 (51%), Gaps = 19/287 (6%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       + ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---V 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    DG ++   +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    +P+    +    R+ F      ++F      VSMGNPHA+ FV DD+  
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTG----VSMGNPHAVIFV-DDVEE 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAV 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 239 LNEKMKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 285


>gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13]
 gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13]
          Length = 272

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 16/283 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-D 61
             + F KM+ IGN  +VI+      +++   I  L+       FDQ+++I    + +  D
Sbjct: 1   MKIPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC   ++       +   T ET+ G +   +  D  I+VD
Sbjct: 61  YKYRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTK-DDELIAVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   +  K  P        D+    I  +          + +GNPH +FFV D +   D
Sbjct: 120 MGTYSIGMKNEPSLFFDIFSDKKTEEIQGI---------YIDVGNPHIVFFV-DSVKDVD 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G  +    +F   VN+    + +   + L  +ERG GLT  CGS ACA+ +A+  L
Sbjct: 170 AVRTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHL 229

Query: 240 HKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            K   + V V M GG +  +   +NH+ + G+A   +EG +++
Sbjct: 230 KKVEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272


>gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
 gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
          Length = 290

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 23/292 (7%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + +D+    + +  + + A++            D ++LI   + A +  
Sbjct: 6   FTKMHGLGNSYIYVDL--FRETLPEEELPAIARSVADVHTGIGSDGLILICPSEKAPL-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
            +RI N DGSE ++CGNG+RCV ++      ++ ++F  ET+ G++ A+         S+
Sbjct: 62  KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVADGEVTSV 121

Query: 117 SVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +VDMGEP L+   IP+     +++  + F I    +        VSMGNPH IF+V DD+
Sbjct: 122 TVDMGEPRLERSAIPMVGPKAERVVAEPFAIAGGEYE----MTAVSMGNPHVIFYV-DDI 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +   G L+ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 177 QKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           S    KT       V + GG L I W  +  V MTG A+    G    + G+
Sbjct: 237 SVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGVYYYRGGR 288


>gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris]
          Length = 284

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 126/282 (44%), Gaps = 9/282 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + +  + F KM G GN  +V+D+R       +     L+        DQI+ I   + A 
Sbjct: 5   VHTGRLRFTKMHGAGNDFVVLDLRNGTPPPDASLAARLADRHFGVGCDQILTIETPRSAE 64

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117
             A  RI N DGS  Q CGNG RCV  +L      +   FT ++       +    G+ S
Sbjct: 65  AVAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAGTYS 124

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +  
Sbjct: 125 VAMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDA 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G LL ++  F E VN+  A+V     + LR +ERGVG T ACGS ACA+ V   
Sbjct: 180 APVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAVVLM 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
              +  R V V + GG L I W      V M+G A   ++G+
Sbjct: 240 HRGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGE 281


>gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
 gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
          Length = 1355

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 148/299 (49%), Gaps = 25/299 (8%)

Query: 1    MQSSMV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
            M++  +  +F KM G GN  +  D    HD    +A++   +D +       +I      
Sbjct: 1064 MRTEKIKANFTKMHGCGNDYIYFDCF-QHDINNPEALSVRLSDRHYGIGGDGVILVCPSD 1122

Query: 59   SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK----E 110
              D  +R+ N DGSE + CGNG+RCV +FL         ++  T ET+ GI        +
Sbjct: 1123 VADGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYND 1182

Query: 111  NRDGSISVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +  ++ VDMG+  L   LIP+  S       D++    + +  V +    +   VSMGN
Sbjct: 1183 RKVCAMKVDMGKAELTPALIPVDASKLPDPKADRIVNAPYTVDGVEY----HVTCVSMGN 1238

Query: 165  PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
            PH + F ++D+   D+   G       +F E VN    RV    +L +R WERG G T A
Sbjct: 1239 PHCVVF-KNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETWA 1297

Query: 225  CGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            CG+ ACA+ VA+      K +  ++VK++GG L+I + D+  V+MTG A   +EG ++I
Sbjct: 1298 CGTGACAAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDD-TVYMTGNAVTVYEGVVEI 1355


>gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 262

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 119/262 (45%), Gaps = 19/262 (7%)

Query: 37  ALSTDDNTHFDQIMLIHDFQDASV--------DAFIRIINCDGSEVQSCGNGMRCVVRFL 88
               +     D +++      A          D  +R+ N DG+E + CGNG+RC+  F+
Sbjct: 1   MCDRNFGIGADGVIVAMPKGSAEYPGRVVEEEDYAMRMFNSDGTEPEMCGNGIRCLANFV 60

Query: 89  T--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
                   +++   T+ G++  +   DG ++VDMG P L    +P   +  + D      
Sbjct: 61  AAIDDADPRAYKVGTLAGLIQPECKPDGQVAVDMGVPTLTPADVPTKLAATE-DGAAVKS 119

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNL 199
                        VSMGNPH + F  +        +   DLA+ G     H  F    N 
Sbjct: 120 QMTVDGATWLATAVSMGNPHCVTFGREKGDEKGLAVDDMDLAAIGPSFESHETFPARTNT 179

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
               V   + + +R WERG G T ACG+ ACA+VVA     +T+R  +V++ GG L IEW
Sbjct: 180 EFVEVVRRDYVKMRVWERGAGATLACGTGACATVVAGVLEGRTDRKCTVELPGGPLEIEW 239

Query: 260 HD-NNHVFMTGEAKKEWEGKLD 280
            + ++ V MTG A+  + G++D
Sbjct: 240 RESDSRVIMTGPAELVFYGEID 261


>gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519]
 gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii]
          Length = 281

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  ++ +   G + + +  A            D +M          D  +
Sbjct: 1   MLFWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACEKSTS--CDIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
              N DGS+   CGNG+RC  +F+     + + SF  E         L+ + +    + V
Sbjct: 59  VYYNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P L+ KLIP    + +   +   I     L       V +G PH + F EDD+   
Sbjct: 119 EMGLPTLEPKLIPALTDYTEFINEEIVIEDRKFL----ASAVLIGVPHLVIF-EDDISLQ 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +L  +G+ L ++  +F + +N++  ++    ++ ++T+ERG G T ACG+   +S   + 
Sbjct: 174 ELDYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIAN 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            L   N  V V   GG + IE      ++MTG A+K  +G++D
Sbjct: 234 KLGLVNDKVKVSSPGGEVEIEILKEK-LYMTGPAQKICDGRVD 275


>gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
 gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
          Length = 277

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR---GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R         +S A+   +   +   D ++++ +   A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVA--DI 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RDGS 115
            +   N DGS    CGNG+RC  RF+     +  + F  +T+ GI     N        +
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVIN 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMGE       IP+A   +K   ++ HI   +         + MG PH I FV D+ 
Sbjct: 119 IKVDMGEGSFKTSDIPMATDKEKFIEEKVHILDRDF----TMTSMLMGVPHTIVFV-DEF 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G  +    +F E  N++  +V    ++++ TWERG G T  CG+   A+ V 
Sbjct: 174 DLEMIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTAAAVV 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L KT ++++V   GG + I+    + VFMTG A K  EG L++
Sbjct: 234 CNYLEKTEKSMNVTSKGGTVKIDI--GDKVFMTGPAVKICEGYLEV 277


>gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 275

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + + D     ++  S A+           D ++++   Q A   A +
Sbjct: 1   MKFYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVAE--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118
            IIN DGS    CGN +RC  +++     + +  F+ ET  G+ +     ++ +   + V
Sbjct: 59  IIINADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P    + IPL+   D +D +    G            V +G PH I F  ++   Y
Sbjct: 119 YMGKPSYRAEDIPLSHGEDFIDSEITCNGK-----TYKATTVLVGVPHTIIF--ENTDEY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  L KH +F+EG N++  ++     + + TWERG G T ACG+   ASVV +  
Sbjct: 172 VVNEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231

Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           L   N  + + VK  GG L+IE + ++ V+M G A+  +EG 
Sbjct: 232 LGLVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEGN 272


>gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
 gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
          Length = 284

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/291 (30%), Positives = 149/291 (51%), Gaps = 18/291 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
             + F KM GIGN  + +D+       D     A    +       D +++I   + A  
Sbjct: 1   MQIAFTKMHGIGNSYIYLDLFQHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA-- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDG 114
           D  +R+ N DGSE  +CGNG+RCV +++  R  ++++  T ET  GI+    V ++NR  
Sbjct: 59  DCGMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVI 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMG+P+L  K IP+  + +++  +     P   L +     + +GNP+A+FFV + 
Sbjct: 119 EVIVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLV---TALFLGNPNAVFFV-NA 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L + G+ +A    F    N+    +   ++L    WERG G+T ACG+ ACA+VV
Sbjct: 175 IEQAPLRTLGD-IANDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVV 233

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           A+           + V++ GG L+I W DN+H++M G A+   +G  +  +
Sbjct: 234 AAILNGFCQKGEEIVVQLSGGDLVIRWADNDHIWMRGPAEFIADGIYEFLS 284


>gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
 gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
          Length = 268

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    DG ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
 gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
          Length = 274

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 20/283 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++F KM+G+GN  ++I D         ++    +         D +++I     A  DA 
Sbjct: 1   MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKICNRRFGIGADGLVIIRKSNIA--DAK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSI 116
           + IIN DGS    CGN +RC  ++L     +++   + ET  GI   +      N+  S+
Sbjct: 59  MVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKVESV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+   D K IPL  + + +  +   I    +        + MG PH I    +D  
Sbjct: 119 KVNMGKGSFDGKDIPL-NNKNSLINEVIKIKEKEYKLT----ALLMGVPHTILINNND-- 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            YD+   G  + K+ +F EG N++  +V  + +++++TWERG G T ACG+  CASVVA 
Sbjct: 172 EYDVIE-GKDIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASVVAL 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L   +  V+V+ LGG L +E   NN V+M G A+   +G  
Sbjct: 231 KKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAEFICKGNY 272


>gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
 gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
          Length = 268

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+   +DG ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEETIFTIETLAGIVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 273

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      +    +         D ++++   +++S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            IIN DGS    CGN +RC  +++     + +  F  ET  GI    L+ K+     + V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  +   IPL  + D++      IG   +    N   + MG PH I F +     Y
Sbjct: 119 YMGKPSFNGSDIPL-NNLDELIDQEIAIGKEKY----NMTSLLMGVPHTIIFEKH--KEY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G  + K  +F +G N+   +V     + + TWERG G T ACG+  CASVV +  
Sbjct: 172 EVQE-GENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L       + VK  GG L++E  ++  V+M+G A+   +G +
Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271


>gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42]
 gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42]
          Length = 284

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + D+   D   +     L       VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTIDETFVFGETELS---GTAVSMGNPHIVFPVA-DINQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EGVN+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
 gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
          Length = 280

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 133/284 (46%), Gaps = 21/284 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           ++F KM G GN  +V+D        +      + A+         D  + +     A  D
Sbjct: 5   LEFTKMHGNGNDFVVVDEFHEEVVPEEHKPQFVRAVCKPRFGVGADGAIFVQPSSVA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKE---NRDGSIS 117
           A  R  N DGSE   CGNG+RC  R++       + F  ET+ GI   +    + +  + 
Sbjct: 63  AKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVKDGEYWVR 122

Query: 118 VDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P+ +   IP A  +FD +  D F +         + + V+ G PHA+ FV  D  
Sbjct: 123 VDMGKPVFEPAKIPAAGGTFDGVWHDTFELFGRK----VDVYAVNTGVPHAVVFV--DSL 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            +D+      +  +  F EG N++ AR+ S   +++RT+ERGV   T +CG+ + A V  
Sbjct: 177 DFDILE-ARKIRYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCGTGSVAVVAV 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L        VK  GG L IE  D    FMTG+A + ++G L
Sbjct: 236 ASKLGLIEPEAIVKTKGGVLRIEVRD--TAFMTGKATRVFDGVL 277


>gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      +    +         D ++++   + +S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            IIN DGS    CGN +RC  +++     + +  F+ ET  GI    L+ K+     + V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  +   IPL  + D++      IG   +    N   + MG PH I F  ++   Y
Sbjct: 119 YMGKPSFNGSDIPL-NNLDELIDQEVAIGKEKY----NMTSLLMGVPHTIIF--ENHKEY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G  + K  +F +G N+   +V +   + + TWERG G T ACG+  CASVV +  
Sbjct: 172 EVQE-GENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L       + VK  GG L++E  ++  V+M+G A+   +G +
Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271


>gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
 gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
          Length = 280

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVI--DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V F KM+G GN  +V+  D     + ++  A            D +++++    A  D  
Sbjct: 3   VQFKKMQGTGNDFIVVKYDDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIA--DIR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI----LVAKENRDGSIS 117
           +   N DGS    CGNG+RC  +F+      + K F+ ET+ GI    ++ ++    S+ 
Sbjct: 61  MDYYNSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGTVKSVE 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+   D + IP+          +  +G  + +       VSMG PH I F E  L  
Sbjct: 121 VNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFIIT----AVSMGVPHVIIFTE-KLDL 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  FG L+ KH +F +  N++       +++ +RTWERG G T ACG+ + ++V  + 
Sbjct: 176 EQIKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTSAVAVAN 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   N  V+V++ GG + I+  ++ ++FM G A+    G+ 
Sbjct: 236 KLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277


>gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
 gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
          Length = 287

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 20/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F+KM GIGN   +ID        +    +A   L         D ++ +     A  D
Sbjct: 7   LKFSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFVVPSDVA--D 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGS 115
              R+ N DGSE + CGNG+RC   F+     +++++ T ET  GI    +  ++     
Sbjct: 65  IGYRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIEITVEDGEPVL 124

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+MG+       IP+    D+       +             V++GNPHAI FV++  
Sbjct: 125 FKVNMGKSTFKVPEIPMIADTDEFVDGDLDVIDT----TFKATCVNVGNPHAILFVDNVD 180

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G  +  H +F E +N+    V S     +RTWERG G+T ACG+ A ++ +A
Sbjct: 181 DIDI-DKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACGTGATSTALA 239

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKLD 280
              L   ++ V + + GG L  E + ++  +  FM G A   +  ++ 
Sbjct: 240 GVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPAALVFNAEIQ 287


>gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 268

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/265 (33%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    DG ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEKAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
 gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
          Length = 283

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 124/280 (44%), Gaps = 9/280 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S+ + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   STALRFSKMHGAGNDFVVIDLRDGTAPPTPELAARLADRHTGVGCDQILTIEAPRADGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +   F  ++       K   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVFVIDSPLASHEVKVLGDGQFAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL       +     +   +  F      VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPSNVPLVGFAHPREEYLLPLQGESVRF----AAVSMGNPHAVIEV-GLIDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F   VN+  A+V   +   LR +ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
            +  R   + + GG L I+W  +   V M G     +EG+
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293]
 gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293]
          Length = 268

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/272 (33%), Positives = 140/272 (51%), Gaps = 16/272 (5%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           + + R   +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGN
Sbjct: 1   MFEERIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGN 58

Query: 80  GMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLA 133
           G+RCV ++      ++   FT ET+ GI+ A+    +G ++   +DMG P L    IP+ 
Sbjct: 59  GLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPML 118

Query: 134 RSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
              +    R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H M
Sbjct: 119 GEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEM 173

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKM 250
           F E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V +
Sbjct: 174 FPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHL 233

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            GG L+I W +  +V M G A+    G  + K
Sbjct: 234 AGGDLMIAWTEEGNVLMKGPAEVICHGVYEYK 265


>gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
          Length = 241

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 88/245 (35%), Positives = 126/245 (51%), Gaps = 9/245 (3%)

Query: 40  TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSF 97
                 FDQ++L+    +  VD   RI N DGSEV+ CGNG RC  RF+  +    +K  
Sbjct: 3   RHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQI 62

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
             ET  GI+  +   DG ISVDMG P L  + IP    F   ++ + +   V+   +   
Sbjct: 63  RVETKGGIIELEIRSDGQISVDMGPPRLVPEEIP----FQAAEQAKSYSLDVDGQTVELA 118

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
             VSMGNPHA+  V DD+ +  + + G  +  +P F   VN+    V   +   LR WER
Sbjct: 119 -AVSMGNPHAVLRV-DDINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWER 176

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276
           G G T ACG+ ACA+ VA+      +  + + + GG L IEW    H V MTG A + +E
Sbjct: 177 GAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYE 236

Query: 277 GKLDI 281
           G++ +
Sbjct: 237 GQVRL 241


>gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
 gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
          Length = 275

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 1   MHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG 
Sbjct: 61  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +     ++  +    L     VSMGNPHA+  V D +    +  
Sbjct: 121 PVFEPERIPLSGFPNALGE---YVLSLQGEVLCCG-AVSMGNPHAVVEV-DLIDVAPVER 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 176 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 235

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R V V + GG L ++W      V ++G A+  ++G 
Sbjct: 236 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 272


>gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 268

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    DG ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FVE D+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFVE-DVEKAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + E ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8]
 gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8]
          Length = 275

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 119/283 (42%), Gaps = 21/283 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  ++ID               A            D I+ +        D
Sbjct: 3   IPFVKLHGNGNDFVLIDEYAQMIIPDDLKGQFAALYCERRFGIGADGILFLAKPTR-KAD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---SIS 117
             +RI+  D SE + CGNG+RC+ ++       +++ T +T  G L      +G   +++
Sbjct: 62  IRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTVT 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + MGEP    K IP     +  ++          +       V+ G PHA+    DDL  
Sbjct: 122 IGMGEPKFKRKDIPATGKGEYHEQ----------IGGFEVHAVNTGVPHAVILT-DDLGS 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            DLA+    +  HP F  G N++  + T  +S+ +RT+ERGV   T +CG+ A AS    
Sbjct: 171 IDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAAVV 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L   N  V V+  GG L I +       M G A   + G +
Sbjct: 231 HHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSGLI 273


>gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
 gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
          Length = 268

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    +G ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
 gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
          Length = 275

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 5   MVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F K  GIGN  ++  +      + +  A+     +     D +M+    +    D  
Sbjct: 1   MLKFEKYHGIGNDFIIFREEEVAGLDYSELAMKVCHRNFGIGADGMMV--AAKSEKADIR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-ILVAKENRDGSI--SV 118
           +   N DGSE   CGNG+RC   F+ +   +++     ET+ G +L+  E +DG     V
Sbjct: 59  MIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNMLIKTEEKDGRYLARV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PI +   IP++ S    ++D       ++    +   + MG  H++ FV DDL   
Sbjct: 119 NMGMPIFETDSIPMSVS----EKDYIERKIESYDREFSISALFMGTTHSVTFV-DDLETL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+  +G  L  +P+F    N++ A+  S + +D++TWERG G T ACG+ ACA VV    
Sbjct: 174 DIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWERGAGYTFACGTGACAVVVIGNL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             + ++ V V + GG L IE  D+  VFMTGE++K  EG
Sbjct: 234 TGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAEG 271


>gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07]
 gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07]
          Length = 285

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 135/286 (47%), Gaps = 18/286 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D
Sbjct: 9   LMKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--D 66

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGS 115
             +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N       S
Sbjct: 67  VEMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINS 126

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG+     K +P+  + ++  ++   +               MG PH +  V D+L
Sbjct: 127 IRVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSML----MGVPHTVVIV-DEL 181

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS + 
Sbjct: 182 DVEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIV 241

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 242 CNLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 285


>gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 267

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 130/280 (46%), Gaps = 14/280 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM   G+  ++ID RG  D IT+     L +      F+Q+ +++D ++A+  A
Sbjct: 1   MLLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLGNRHTGIGFNQLAVVYDCEEAA--A 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I   N +G+ + +CG+  R V   L     + S    T RG+L         +SVDMGE
Sbjct: 59  RISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+W  +PL+ + D +                +P   SMGNPH  FFV DD+   D+A 
Sbjct: 119 PSLEWTAVPLSDAMDTL----------TLPVEGSPAACSMGNPHCTFFV-DDIAAVDVAG 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F    N+   +V     + LR WERG G+    GS  C +VV        
Sbjct: 168 LGPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRGLL 227

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  V V+  GG + ++W     V +TG  +   +G   + 
Sbjct: 228 DATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGSAYVP 267


>gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208]
          Length = 284

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + ++   +   +     L       VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEEERTINETFVFGETELS---GTAVSMGNPHIVFPVA-DISQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 284

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +     ++  +    L     VSMGNPHA+  V D +    +  
Sbjct: 130 PVFEPERIPLSGFPNALGE---YVLSLQGEVLCCG-AVSMGNPHAVVEV-DLIDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R V V + GG L ++W      V ++G A+  ++G 
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281


>gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 268

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    +G ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICRGVYEYK 265


>gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
          Length = 273

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      +    +         D ++++   +++S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSENSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            IIN DGS    CGN +RC  +++     + +  F  ET  GI    L+ ++++   I V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEYIKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  + + I L    + +D++             N   + MG PH I F  D    Y
Sbjct: 119 YMGKPSFNGRDISLNNLEELIDKEVVIDKEK-----YNMTSLLMGVPHTIIFERD--KEY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G  + K  +F EG N+   +V     + + TWERG G T ACG+  CASVV +  
Sbjct: 172 EVQE-GEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L   N   + VK  GG L+IE  ++  V+M+G A+   +G +
Sbjct: 231 LGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAEFICKGNI 271


>gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
 gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
          Length = 272

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI D+   +     +    +         D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K+      T  G+    L  + ++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP A   +++   +  +G  N         + MG PH I F E     
Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 171 YPIEC-GREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   ++ V V + GG L +   D+  V M G A    +G  
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270


>gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63]
          Length = 276

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N       SI
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +               MG PH +  V D+L 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSML----MGVPHTVVIV-DELD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 174 VEDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276


>gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
 gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 137/282 (48%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI D+   +     +    +         D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K+      T  G+    L  ++++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIEKDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP A   +++   +  +G  N         + MG PH I F E     
Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +  FG  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 171 YPIE-FGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   ++ V V + GG L +   D+  V M G A    +G  
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270


>gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
 gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
          Length = 283

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 124/280 (44%), Gaps = 9/280 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTVPPTPELAARLADRHTGVGCDQILTIEAPRAEGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +  +F  ++       K   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHQVKVLGDGHYAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL       +     +      F      VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPANVPLVGFAHPREEYLLPLQGETVRF----AAVSMGNPHAVIEV-GLIDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+LL +H  F   VN+  A+V +     LR +ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
            +  R   + + GG L I+W  +   V M G     +EG+
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
 gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
          Length = 281

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 140/290 (48%), Gaps = 21/290 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQD-ASV 60
           S+M+ F KM G GN  + ++           A  A S        D ++LI    D +  
Sbjct: 2   STMIHFTKMHGAGNDYIYVNTLSEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDTSQA 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----- 113
           D  + I N DGSE   CGN  RC+ ++L  +    +K    ET+ GI +   + D     
Sbjct: 62  DFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDANNHV 121

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S++VDM EP  +   +P   + +                 +    VSMGNPH + FV D
Sbjct: 122 ASVTVDMLEPQFN---VPEQFTGNHPSLSAI-------PGAQEGIFVSMGNPHYVIFV-D 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D++  DL   G  L     F +  N+  A++T+  +L  R WERG G+T ACG+ ACA+ 
Sbjct: 171 DIHAIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMACGTGACATA 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
            A+    +T R V++ M GG L +EW  DNNH++++G A   +EG + + 
Sbjct: 231 TAAIQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALP 280


>gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26]
 gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932]
 gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55]
 gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34]
 gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79]
 gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291]
 gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58]
 gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291]
          Length = 276

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N       SI
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +               MG PH +  V D+L 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSML----MGVPHTVVIV-DELD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 174 VDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGVLEV 276


>gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
 gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 8/273 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D R       +   + ++   + H FDQ++++    DA  D  +R+ N 
Sbjct: 1   MNGAGNAFIVLDRRDAS-GPAAYGESGIAALLDVHPFDQLIVLDPSSDADAD--LRVWNR 57

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DG EV +CGNG R     L     +   +F +  G + A+   DG+  VD+G   LDW+ 
Sbjct: 58  DGGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWRD 117

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D M  D F +   +   L  P  VSMGNPH +F V DD+    LA  G  +  
Sbjct: 118 IPLSLPMDTMRLD-FGVNLPDGGRLEGPGAVSMGNPHVVFAV-DDVLALPLAEIGPCIEH 175

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
            P+F + VN   A+V   + + L+ +ERG GLT ACG+ ACA++VA       NR   ++
Sbjct: 176 DPLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVALHRQGLVNREAVIE 235

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             GG L + W    HV ++G      E +LD++
Sbjct: 236 ADGGKLPVRWDTEGHVHLSGPV--VLERELDLR 266


>gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
 gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
          Length = 268

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    +G ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWTEEGNVLMKGPAEVICHGVYEYK 265


>gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
 gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
          Length = 284

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 19/285 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE ++CGNG+RCV ++      +  + F  ET+ G++ A  +  G     ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG PIL  + IP+   S D++  +    G            VSMGNPH +F+V +D+ 
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER----LKGTAVSMGNPHVVFYV-NDIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S
Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               KT  +    V + GG L I W +  +V MTG A    +G  
Sbjct: 238 VLNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDGTY 282


>gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630]
 gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42]
 gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255]
 gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile]
          Length = 276

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSI 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N       SI
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +               MG PH +  V D+L 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSML----MGVPHTVVIV-DELD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 174 VDDVCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276


>gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 295

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG        +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 29  IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVISDGDDAAA 88

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
               R  N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 89  RVAFR--NPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P LDW+ +P++ + D +                 P   SMGNPH  FFV DD+   D+
Sbjct: 147 GAPRLDWQDVPVSEAVDTLVL----------PLPGAPAACSMGNPHCTFFV-DDVAALDI 195

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  V V   GG + ++W     VF++G     + G 
Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFGGV 293


>gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
          Length = 289

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 19/290 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M++S   F K  G+GN  + +D +     +T+  I A+   +     D I+ +   ++A 
Sbjct: 1   MRNS---FFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA- 56

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE--NRDGS 115
            D  +RI N DGSE +  GNG+R    FL +  + KR+SF+ ET  G++  +   +R+G 
Sbjct: 57  -DFGLRIFNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVETKGGLVHVELTLDRNGQ 115

Query: 116 I---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +   +VDMG      + +P      ++          +  F      VS+GNPH + F +
Sbjct: 116 VNGATVDMGRASFRPRDLPCTIKAPELIMQPIKAVGQSLRFTG----VSVGNPHCVVFRD 171

Query: 173 --DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
                   DL   G  L  HP F +  N+ +A  T   ++ +  WERG G T A GS+AC
Sbjct: 172 RGGSWTREDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSAC 231

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A   A   L      V V   GG L I       + + G   + ++G+  
Sbjct: 232 AVASAGVRLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRFS 281


>gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
 gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
          Length = 272

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI D+   +     +    +         D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K+      T  G+    L  + ++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP A   +++   +  +G  N         + MG PH I F E     
Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 171 YPIEC-GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   ++ V V + GG L +   D+  V M G A    +G  
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270


>gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 268

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-M 139
           +      ++   FT ET+ GI+ A+    +G ++   +DMG P L    IP+    +   
Sbjct: 66  YAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      + F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L+I
Sbjct: 181 EFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWIEEGNVLMKGPAEVICHGVYEYK 265


>gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
 gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
          Length = 277

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R  + +       A  A     +   D ++++ +   A  D 
Sbjct: 1   MKFWKLHGIGNDFVAIDGRYDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-RDG---SI 116
            +   N DGS    CGNG+RC V+F+     +++  F   T+ GI   K N +DG   SI
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P++   +K    +  +    +        + MG PH + FV D+L 
Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITVLDREYTVT----SILMGVPHTVIFV-DELS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++  +G  + KH +F +  N++  ++   +++ ++T+ERG G T  CG+   A V+ S
Sbjct: 174 MEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACVMVS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L K  ++V+V   GG + I+  +N   +MTG A K  EG L++
Sbjct: 234 NYLGKVGKSVNVISEGGSVRID-LENGFAYMTGPAVKICEGNLEV 277


>gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 284

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L     +  + F  ++       +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +     ++  +    LR    VSMGNPHA+  + D +    +  
Sbjct: 130 PVFEPERIPLSGFPNALGE---YVLSLQGEVLRCG-AVSMGNPHAVVEI-DLIDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R V V + GG L ++W      V ++G A+  ++G 
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281


>gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101]
 gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101]
          Length = 272

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI D+   +     +    +         D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K+      T  G+    L  + ++  +I+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP A   +++   +  +G  N         + MG PH I F E     
Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 171 YPIEC-GKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   ++ V V + GG L +   D+  V M G A    +G  
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270


>gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
 gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
          Length = 276

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 127/285 (44%), Gaps = 23/285 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M++F K+ G GN  +VID         +     A+           D I+ I        
Sbjct: 1   MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYI--SGSDKA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG---S 115
           D  +R++  D SE + CGNG+RC+V++      +     T ETI  +   K  +D     
Sbjct: 59  DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118

Query: 116 ISVDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + V+MG+P+     IP    S D       H  PV         VV+ G PHA+ FVE+ 
Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHDYPV--------SVVNTGVPHAVIFVEN- 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              +++ +    +     F  G N++  R+ S + + +RT+ERGV   T +CG+ + AS 
Sbjct: 170 -LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASA 228

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             S  L K N  V V   GG L IE      ++M G A+  ++G 
Sbjct: 229 YISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKGV 273


>gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a]
 gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia
           K279a]
          Length = 283

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 121/280 (43%), Gaps = 9/280 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTAPPTPELAAQLADRHTGVGCDQILTIEAPRAEGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +   F  ++       +   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRFVIDSPLASHEVEVLGDGQFAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL       +     +   +  F      VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPANVPLVGFAHAREEYLLPLQGESVRF----AAVSMGNPHAVIEV-GLIDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F   VN+  A+V       LR  ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
            +  R   + + GG L I+W  +   V M G     +EG+
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGE 280


>gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
 gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
          Length = 272

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI D+   +     +    +         D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K+      T  G+    L  + ++  +I+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP A   +++   +  +G  N         + MG PH I F E     
Sbjct: 119 VNMGFGDFKPKNIP-ALCDEEIIEKKVSVGNGNFEIT----SLLMGVPHTIIFEE---EK 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 171 YPIEC-GRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   ++ V V + GG L +   D+  V M G A    +G  
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGTY 270


>gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3]
          Length = 284

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + D+   +   +     L       VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTINETFVFGETELS---GTAVSMGNPHIVFPVA-DISQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
 gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
          Length = 267

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 124/283 (43%), Gaps = 28/283 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G GN  +++D R     +    I  L         D ++++   Q    +  
Sbjct: 1   MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQS-GANFR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +R  N DG E + CGNG RC  RF      +    +FET+ G + A+   D ++ + M E
Sbjct: 60  MRYYNADGGEAEMCGNGARCFGRFAQRVSGQAGDISFETMAGKITAQFI-DNNVRIQMSE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      + L  S D                +     V+ G PHA+ FV DDL   D+  
Sbjct: 119 P----HSLRLNESLDSGGE------------VLTVHSVNTGVPHAVVFV-DDLEQVDVRR 161

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           FG  L  H  F  +G N +  +    +++ +RT+ERGV   T ACG+   A  +    L 
Sbjct: 162 FGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHELT 221

Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGK 278
                V+VK+ GG  L I +  +  V+    +TG A   ++G+
Sbjct: 222 GAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264


>gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 284

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +D    L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGMPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281


>gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 216

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+M
Sbjct: 1   HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 60

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  +   +P    F     ++ +I       +    VVSMGNPH +  V D++    +
Sbjct: 61  GEPNFEPAQVP----FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAV 114

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V       
Sbjct: 115 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 174

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 175 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 216


>gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
 gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
          Length = 284

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 144/283 (50%), Gaps = 19/283 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE ++CGNG+RCV ++      +  + F  ET+ G++ A  +  G     ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +DMG PIL  + IP+   S D++  +    G            VSMGNPH +F+V +++ 
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKER----LKGTAVSMGNPHVVFYV-NNIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S
Sbjct: 178 QAPLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSS 237

Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               KT + V   V + GG L I W +  +V MTG A    +G
Sbjct: 238 VLNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDG 280


>gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304]
 gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304]
          Length = 280

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 81/291 (27%), Positives = 128/291 (43%), Gaps = 21/291 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
             + F KM G GN  ++ID        +      + A+         D  + +   Q A 
Sbjct: 1   MRIAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG--SI 116
            D   R  N DGSE   CGNG+RC  R++       +    ET+ GIL  +  R+    +
Sbjct: 60  -DVRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILELEVKRENGWWV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+P    + IP      K D   + +      F    +  + G PH   FV  D  
Sbjct: 119 KVDMGKPKFGREEIPA-----KTDVWGYEVEHDGRKF--RIYAANTGVPHVAVFV--DSL 169

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            +D+      +    +F EG N++ A+V   +++ +RT+ERGV G T +CG+ + A    
Sbjct: 170 DFDIVPLARKIRYSEIFPEGTNVNFAKV-DGDTITVRTYERGVEGETLSCGTGSVAVAAI 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           +  L  T   V V   GG L IE  ++   +MTG A + ++G L +   ++
Sbjct: 229 ANRLGLTGSKVDVVTKGGLLKIELTED-TAYMTGGASRVFDGILRLNELRY 278


>gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
 gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
          Length = 284

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +  ++F KM G GN  + ID          + +    +D +       +I   ++ S   
Sbjct: 2   AQKIEFTKMHGAGNDYIYIDTMRFPIAH-PEKLAIAWSDRHKGIGGDGIILIGKNESGYF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGS 115
            +RI N DGSE + CGNG+RCV ++L        K    +T+ G  +       +N+   
Sbjct: 61  TMRIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVE 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++VDMGEPIL      LA     M      IG  N+        VSMGNPH I F+ + +
Sbjct: 121 VTVDMGEPILA-DKHQLATPDGSMKDGEVTIGHTNYR----GTFVSMGNPHFINFI-NGV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             YD+ + G  L +  +F E  N+  A +    S+ +R WERG G+T ACG+ ACA+ VA
Sbjct: 175 EEYDVQTNGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +    +  R  ++ M GG L I W++ +NH++MTG A   + G +++ 
Sbjct: 235 AALTGRAGRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIELP 282


>gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
 gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
          Length = 284

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  AI   S       D ++LI     A V   
Sbjct: 5   QFTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117
           +RI N DGSE ++CGNG+RCV +++     +   +F  ET+ G++ A  +        ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P  + + +P+          +    G        N   VSMGNPH +F++E D+ 
Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINEPLDFG----TTTLNGTAVSMGNPHIVFYLE-DIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++
Sbjct: 178 KAPLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237

Query: 237 GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  +    +V + GG L+I W DN HV MTG A+   +G   +
Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284


>gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
 gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
          Length = 284

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  AI   S       D ++LI     A V   
Sbjct: 5   QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN----RDGSIS 117
           +RI N DGSE ++CGNG+RCV +++     +   +F  ET+ G++ A  +        ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMG+P  + + +P+          +    G        N   VSMGNPH +F++E D+ 
Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFG----TTTLNGTAVSMGNPHIVFYLE-DIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++
Sbjct: 178 KAPLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVST 237

Query: 237 GCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  +    +V + GG L+I W DN HV MTG A+   +G   +
Sbjct: 238 IVNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284


>gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 269

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG        +  D +  +        F+Q+ +I D  DA  
Sbjct: 3   IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGDDAV- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 62  -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ +P++ + D +                 P   SMGNPH  FFV DDL   D+
Sbjct: 121 GAPRLGWQDVPVSEAVDTLAL----------PLPGAPAACSMGNPHCTFFV-DDLRAIDV 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 170 ATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  V V   GG + ++W     VF++G     + G 
Sbjct: 230 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSGV 267


>gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 321

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +VID R      +SD I  +         DQ+++    +       +RI
Sbjct: 49  FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVCNRHVGIGGDQLLVFEAPESPEASVRLRI 108

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG E ++C N  RC    +    +R     ET+ G + AK   D  +S+ +G    D
Sbjct: 109 YNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNAKWD 168

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA S +           +    L +P  +++GNPH ++FV++ L   D+A+  + 
Sbjct: 169 WPEIPLAGSLESAGAQ------LESGPLVSPIAINIGNPHLVYFVQN-LGGLDIAALADP 221

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245
           + K     E  N+ +A VT  +S+ L  +ER   LT ACGS ACA+V+A+      +   
Sbjct: 222 VQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLISSDK 281

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V+V   GG L +E  D     +TG     ++G +
Sbjct: 282 VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315


>gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 240

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 7/240 (2%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETI 102
            FDQ++++        D   RI N DGSEV+ CGNG+RC  RF+  R    + + T +T 
Sbjct: 2   GFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTK 61

Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
            GI+  +  ++G + V+MG P      IP          +  +   + +    +  VV+M
Sbjct: 62  AGIVKPELGQNGWVRVNMGYPKFLPNEIPFVADEP----EALYTLELANDQNISIDVVNM 117

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPHA+  V  D+   D+A  G  +  H  F E VN    +V   + + LR +ERGVG T
Sbjct: 118 GNPHAVTIVP-DVLTADVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGET 176

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            ACG+ ACA+ V+         +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 177 LACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236


>gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12]
 gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12]
          Length = 284

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 129/277 (46%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L        + F  ++       +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   +       ++  +    LR    VSMGNPHA+  V D +    +  
Sbjct: 130 PVFEPERIPLSGFPNACAE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R V V + GG L ++W      V ++G A+  ++G 
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 281


>gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
 gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
          Length = 284

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + +   A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117
           +RI N DGSE ++CGNG+RCV ++       +  SF  ET+ G++ A+      +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L    +P+     ++   +    G            VSMGNPH +F +E D+ 
Sbjct: 123 VDMGEPRLTKAELPMLGGGEEQTINETMTFGEAE----LKGTAVSMGNPHIVFPIE-DIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS
Sbjct: 178 QAPLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVAS 237

Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 K +  ++V + GG L+I W +N HV MTG A+   EG   +
Sbjct: 238 VLNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEGVYFL 284


>gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
 gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195]
 gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
          Length = 284

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  AI   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117
           +RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+      +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L    +P+     +    +    G V          VSMGNPH +F +  D+ 
Sbjct: 123 VDMGEPRLTKSELPMLDGGEEHTINETMAFGEVE----LTGTAVSMGNPHIVFPIA-DIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS
Sbjct: 178 QAPLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVAS 237

Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 K N+ ++V + GG L+I W DN HV MTG A+   EG   +
Sbjct: 238 VLNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEGVYFL 284


>gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 269

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 124/278 (44%), Gaps = 18/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG        +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 3   IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVISDGNDAA- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 62  -ARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ +PL+ + D +                 P   SMGNPH  FFV DD+   D+
Sbjct: 121 GAPRLGWQDVPLSEAIDTLAL----------PLPGAPAACSMGNPHCTFFV-DDVGTIDI 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  V V   GG ++++W     VF++G     + G 
Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSGV 267


>gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383]
 gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 266

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 14/274 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM   G+   ++D+RG    I       +        F+Q+ ++ D  DA+  A +
Sbjct: 3   IGFHKMHANGDDFAIVDLRGATHAIDGRLARQMGDRKRGIGFNQLAVVSDCDDAA--ARV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS + +CG+  R V   L       S    T RG LV     +  ISV+MG P+
Sbjct: 61  AFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGTPL 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W+ +PLA + D +                 P   +MGNPH  FFV DDL   D+A+ G
Sbjct: 121 TGWRDVPLAEALDTLAL----------PLPGAPAACNMGNPHCTFFV-DDLRAIDVAALG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F +  N+   +V     + LR WERG G+    GS +C +VV        + 
Sbjct: 170 PAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLLDD 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            V V+  GG + ++W     V ++G     + G 
Sbjct: 230 IVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSGV 263


>gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315]
 gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315]
          Length = 270

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 123/278 (44%), Gaps = 18/278 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG        +  D +  +        F+Q+ +I D  DA+ 
Sbjct: 3   IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVISDGDDAA- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I V+M
Sbjct: 62  -ARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ IP A + D +                 P   SMGNPH  FFV DD    D+
Sbjct: 121 GAPRLGWQDIPFAEAADTLAL----------PLPGTPAACSMGNPHCTFFV-DDPDTLDV 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP+F +  N+   RV     + LR WERG G+    GS +C +VV      
Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +  V V   GG + + W     VF++G     + G 
Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSGV 267


>gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
 gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
          Length = 275

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 128/285 (44%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  + I+               L         D ++++   + A   A +
Sbjct: 1   MNFYKMQGAGNDFVFIEDFDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELAH--ARM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F+ ET  GI    ++ +      + V
Sbjct: 59  VIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKYVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPL  + + +      +    +        + +G PH I F  D    Y
Sbjct: 119 YMGNPSYNGCDIPL-NNLESLIEKEIAVDDKKYK----MTTLLLGVPHTIIFESD--REY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G+ + K  +FSEG N++  ++     + + TWERG G T ACG+   ASVV +  
Sbjct: 172 NVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L     ++ + VK  GG L+IE    + V+M G A+  ++G+L +
Sbjct: 232 LGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275


>gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 267

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 14/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F KM   G+  +++D R   + +TS     +   +    F+Q+ ++ D  DA  DA +
Sbjct: 3   LNFQKMHANGDDFVIVDSRNSANPVTSAMAQRMGDRNLGVGFNQLAVLLDCDDA--DARV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS +  CG+  R     L       S    T RG+L  +    G ISVDMG P+
Sbjct: 61  MFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVPL 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA++ D                  +P   SMGNPH  +FV DD    D+A+ G
Sbjct: 121 FGWSDIPLAQALDTAVL----------PLAGSPAACSMGNPHCTYFV-DDPATVDIATIG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  + +F    N+   ++     + LR WERG G+    GS +C +VV        +R
Sbjct: 170 PAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLDR 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V V+  GG + ++W     VF+ G  +  + G + 
Sbjct: 230 TVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTMS 265


>gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
 gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
          Length = 278

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K++  GN  ++++     D +++S A            D +M   + + A  D  +
Sbjct: 1   MRFSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDGSISV 118
              N DGS  + CGNG+RC  +F+     +++KSF+ ET  GI    L  +      ISV
Sbjct: 59  NYYNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG        +P     + +      +             V MG PH +  V DD  +Y
Sbjct: 119 DMGRADFRATSVPCTLDSEIILEKEIEVEGQKLKI----SSVLMGVPHTVILV-DDYDNY 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+   G  +     +F    N++  +V   E++ ++TWERG   T  CG+  C+S V + 
Sbjct: 174 DIDRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAH 233

Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L K    +V +   GG + + + +  +V M G A+    G+ 
Sbjct: 234 KLGKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAETICTGEF 276


>gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514]
 gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514]
          Length = 269

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 125/285 (43%), Gaps = 27/285 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +++D R     +  +    L         D IML+        D   
Sbjct: 3   LEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWAW 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS  + CGNG RC  RF+       S FTFET  GI+ A    +  +++ + +P
Sbjct: 63  DFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQGE-RVTIGLTKP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                     R     ++    +G            ++ G PHA+ FV  D     + S 
Sbjct: 122 ----------RDLRLNEQVTLSVGAQP------IHSLNTGVPHAVLFVP-DADKAMVLSL 164

Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
           G  + +H  F  +G N++  +     ++ +RT+ERGV G T ACG+   AS + S  L+ 
Sbjct: 165 GQEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAELNG 224

Query: 242 TNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
               + V++ GG  L + + +N      V +TG A   +EGK+ I
Sbjct: 225 FKSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269


>gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
 gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
          Length = 326

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/321 (29%), Positives = 143/321 (44%), Gaps = 52/321 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALS-TDDNTHFDQIMLIHDF 55
           + F K  G+GN  LV+D+R            +  +   + AL         D IM +   
Sbjct: 1   MRFGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPA 60

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKEN 111
                DA +R++N DGSE + CGNG+RCVV++L  R      R++   ET  G+L  + +
Sbjct: 61  LGDG-DARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAH 119

Query: 112 R------DG------SISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPF 158
           R      DG       ++VDMG P L+   IP+    ++    +   I         +  
Sbjct: 120 RSDTALGDGGIAAIEQVTVDMGRPRLERAQIPMHGPAEERCISEPLAIAGRP----LDIT 175

Query: 159 VVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT----------- 205
            VSMGNPHAI FV+             G  L +HP F    N+ +A +            
Sbjct: 176 AVSMGNPHAIAFVDVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRRAPQSAADDDG 235

Query: 206 ----SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEW 259
               S   ++L  WERG G+T ACG+ ACA+ VA+    +     A++V +LGG L I  
Sbjct: 236 DSADSPTVIELVVWERGCGITLACGTGACATAVAACLTGRARPGEAITVHLLGGPLAITV 295

Query: 260 -HDNNHVFMTGEAKKEWEGKL 279
             + + V M G A   ++G +
Sbjct: 296 GAELDSVRMRGPATHVFDGVV 316


>gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
 gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
          Length = 295

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 138/292 (47%), Gaps = 20/292 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI   D     +N   +    +     +   D ++ I      + D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGI----LVAKENRDGSI 116
              RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+    +  +      I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFFVE 172
            V MG P    K IP+     K + + F  G +N      P     VV++GNPHA+ FVE
Sbjct: 121 KVYMGVPKFKLKDIPMILEG-KDNEEEFLNGELNLNNPILPKVRLSVVNVGNPHAVIFVE 179

Query: 173 DDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           D+    D     L   G  +  H  F E +N+   +V +   + + TWERG G T ACG+
Sbjct: 180 DNNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTACGT 239

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              ASVV +  L KT+  V   + GG L IE  D+  V+M G+A   ++GKL
Sbjct: 240 GTTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290


>gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
 gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
          Length = 286

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 24/288 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQD 57
           ++ ++ F K++G GN  ++ID               A            D ++ +   + 
Sbjct: 11  EAFVIPFVKIQGNGNDFILIDETDGEVIPDPMKAEFAALYCDRRFGIGADGVLFL--SKS 68

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAK----ENR 112
              +  +RI+  D SE + CGNG+RC+V++        ++   ET+ G L  +    EN 
Sbjct: 69  DKANIRMRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNENN 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +    +DMG+ + +   IP     + + +   +          + + V+ G PHA+ FV 
Sbjct: 129 EFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIFV- 177

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231
           D +    +      +  H  F  G N++   +T  + + +RT+ERGV   T +CG+ + A
Sbjct: 178 DSVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGSTA 237

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           S   +  L KT   V V  +GG L+I + + +  FM G A   + G++
Sbjct: 238 SAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284


>gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
          Length = 283

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 120/281 (42%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +  A            DQI+ I   +    
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAVLAARLADRHFGVGCDQILTIEAPRSEDA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L        + F  ++       +     + SV
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAETYSV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVLEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+  A+V     + LR +ERGVG T ACGS ACA+      
Sbjct: 181 PVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGE 281


>gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c]
 gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c]
          Length = 284

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R          +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L     +  + F  ++     + +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   +       ++  +    LR    VSMGNPHA+  V D +    +  
Sbjct: 130 PVFEPERIPLSGFPNACGE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R V V + GG L ++W      V ++G AK  ++G 
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDGV 281


>gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 346

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 68  RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 127

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 128 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 187

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  D   IPLA      D     +    H        VSMGNPHA+  V   +   
Sbjct: 188 AMGMPQFDPPQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAA 242

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 243 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 302

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  D+  V M+G A   ++G+
Sbjct: 303 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 343


>gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 276

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 34/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + +D          +    +S        D ++LI   +    DA++
Sbjct: 1   MRFTKMQGCGNDYIYVDCFSERVERPEELAREISDRHFGVGGDGLILIE--RSGRADAYM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGI----LVAKENRDGSI 116
            + N DGSE   CGNG+RC  ++L        +R+    +T  GI    L+ ++ +   +
Sbjct: 59  HMFNQDGSEGNMCGNGIRCTAKYLYEHGLIPKERREVLIDTKSGIRKLSLLLEDGKVKEV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
           +VDMGE  L  +L            +R  +  +   F+     + +GNPHA++F+ED+  
Sbjct: 119 TVDMGEARLTSEL-----------PERITVSGLPLSFIG----IDVGNPHAVYFLEDNPA 163

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                    DL+  G    +H  F E VN     V S   L+ R +ERG G T ACG+ A
Sbjct: 164 LKERGFSALDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTGA 223

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGK 278
            A+V A     K +  V + +LGG L I +   + H +MTG A++ + G+
Sbjct: 224 TAAVAAGILSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGE 273


>gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
 gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
          Length = 278

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 131/283 (46%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+  GN  ++++ M     N    A            D +M       A  D  +
Sbjct: 1   MKFSKMQAAGNDFILVNGMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSIS--- 117
              N DGS  + CGNG+RC  +F+     +K++ F+ ET  GI  +      +G+I    
Sbjct: 59  YYYNSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNIEYLE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+     K IP     + +  +   I     +F      V MG PH   FVE+    
Sbjct: 119 VDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVF----SSVLMGVPHTTIFVEN-FDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVAS 236
           YD+   G+L+ K+ +F E  N++ A++ + +++ ++TWERG G T  CG+  CA + +A 
Sbjct: 174 YDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATAALAY 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                    + +   GG L IE  +N  + M+G+A+    G+ 
Sbjct: 234 KLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAETICHGEF 276


>gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
 gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
          Length = 281

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 22/283 (7%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + FAKM G GN  ++ID        +      + A++        D ++ +   + A  D
Sbjct: 3   IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---SIS 117
           A  R  N DGSE + CGNG+RC  R++            ET+ GI   +  ++     + 
Sbjct: 61  AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP   + + +      I   +       + V+ G PHA+ FVED  + 
Sbjct: 121 VDMGTPKFSKDEIP---TKEDVWGKEIKIDNRSFEI----YAVNTGVPHAVIFVED--FD 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           +D+   G  +    +F EG N++  +        +RT+ERGV   T +CG+ + A    +
Sbjct: 172 FDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAVAAVA 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L   +  V +   GG L +E+ +    ++ G A +  +GK+
Sbjct: 231 RKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKI 272


>gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 284

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 141/287 (49%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSIS 117
           +RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+      +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVA 122

Query: 118 VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L    +P+    ++    +    G            VSMGNPH +F +  D+ 
Sbjct: 123 VDMGEPRLTKAELPMLGGGEEYTISETMTFGEAE----LTGTAVSMGNPHIVFPIA-DIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G ++ K P F EGVN+      +   L  R WERG G+T ACG+ ACA+ VAS
Sbjct: 178 QAPLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVAS 237

Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + R   ++V + GG L+I W  N HV MTG A+   EG   +
Sbjct: 238 VLNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEGVYFL 284


>gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091]
 gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091]
          Length = 292

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDASV 60
           ++F KM  +GN  +VI+       I  +A N LS        +   D ++     +    
Sbjct: 5   IEFTKMHALGNDYIVINETETEV-IPEEAKNKLSNDICTRRFSVGSDGVIF--ACKSDKS 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI----LVAKENRDG 114
           D   RI N DGSE + CGNG+RC+ +++     +K+++   ET+  I    L  +++   
Sbjct: 62  DVRFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVK 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           SI++DMG+     + IP        D        V+   +     VS+GNPHA+ F + +
Sbjct: 122 SIAIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKI-IMSSVSVGNPHAVSFTDIN 180

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL  +G  +  H  F E VN+    + S   +++ TWERG G T ACG+   + V+
Sbjct: 181 IDDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVL 240

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
               +   N  V   + GG L I   D+N      M G+A   ++ ++ + 
Sbjct: 241 LGYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTVD 291


>gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
 gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
          Length = 280

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M+  ++ F+KM G+GN  ++++            I   +       FDQ++++ +   + 
Sbjct: 1   MKKKIL-FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSR 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF-ETIR-GILVAKENRDGSIS 117
            D + +I N DG+E   CGNG RC+ +++   + +K F    T +  ++ + ++R   I+
Sbjct: 60  FDFYCQIFNSDGTESFQCGNGFRCLAKYIYVNINKKPFHIIRTKKHTVITSIKDRGKEIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P    K +      + + +        NH  +     V++GN H +F ++D    
Sbjct: 120 VNMGTPRFISKKVLTVFQKEWLRQLLTFEKEYNHFEM-----VNIGNSHLVFIIQDSKEI 174

Query: 178 YDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +     + L  + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACASV   
Sbjct: 175 VRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACASVAFG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                 N  V V    G L + W   +  +FMTG A   ++G + I
Sbjct: 235 IKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280


>gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136]
          Length = 274

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 30/291 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           ++++ F KM G GN  +++D R     ++ ++I  L         D ++ +    +   D
Sbjct: 2   ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGG-D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVD 119
             +R  N DG E + CGNG RC  RF+         +  FET  G++ A+   D  + ++
Sbjct: 61  FRMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEFFGD-QVEIN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177
           M +P                   + + G V          V+ G PHA+ FV+D   L  
Sbjct: 120 MSQPH----------------SLKLNQGLVVDGTPLEVHSVNTGVPHAVVFVDDVNALST 163

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            ++   G  L  H  F  +G N + A V S  S+ +RT+ERGV   T ACG+   A  + 
Sbjct: 164 AEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACALI 223

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGKLDI 281
              LH     VSVK+ GG  L + ++    V+    + G A   ++GKL++
Sbjct: 224 HHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274


>gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
 gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
          Length = 297

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 134/294 (45%), Gaps = 20/294 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDAS 59
             ++F KM  +GN  +VI+          +    A        +   D ++ +       
Sbjct: 1   MKMEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDE 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG---- 114
            D   RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+ V++   +G    
Sbjct: 61  YDVRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVK 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP----FVVSMGNPHAIFF 170
            I V MG P    K IP+       D D F  G +       P     VV++GNPHA+ F
Sbjct: 121 KIKVYMGVPKFKLKDIPMVVDGYSED-DEFLNGELELKNPYLPKVKLSVVNVGNPHAVIF 179

Query: 171 VEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           VED+    D     L   G  +  H  F E +N+   +V +   + + TWERG G T AC
Sbjct: 180 VEDNGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTAC 239

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G+   ASV+ +  L KT   V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 240 GTGTTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292


>gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 284

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
 gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
          Length = 285

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 130/288 (45%), Gaps = 21/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
            + F K  G+GN  ++ D +    N   D    A            D I+++    +   
Sbjct: 3   KLKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEVP- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS--- 115
             F+   N DGS+   CGNG+RC   +L +   +    FT +TI G ++     D     
Sbjct: 62  --FMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTF 119

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              V+MG+P+ + K + +    D    ++  I             + MG  H++ F  DD
Sbjct: 120 FARVNMGKPVFNVKEL-INTDKDNFINEKITIDGEEIEI----SFIFMGTDHSMIF-SDD 173

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L   D+   G  +     +F + VN +   +    ++ + TWERG GLT ACG+ A AS 
Sbjct: 174 LSKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATASA 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
           V +  L KT+  V+V++ GG L+IE+ ++    FMTG ++K  EG   
Sbjct: 234 VLTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEGYYS 281


>gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
          Length = 284

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSQGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  VAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
 gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
          Length = 283

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 114/283 (40%), Gaps = 12/283 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  +V+D      N T   I AL+        DQ++L+   +        RI N 
Sbjct: 1   MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60

Query: 70  DGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            G EV+ CGNG RC+ RF             FET++G +  +   DG + VDMG P L  
Sbjct: 61  TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYHYDL 180
             +P A   D     R             P         V MGNPHA  FV D +  + +
Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFCPPLSCDIEFTAVGMGNPHATIFV-DGVDSFPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
                 L    +F E VN+         +  +R +ERG G T ACG+   A++ +     
Sbjct: 180 EPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAAMASGCLRG 239

Query: 241 KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
             +  V     GG +   W      +++ G A+  + G + + 
Sbjct: 240 FFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISLD 282


>gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 284

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
 gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
          Length = 286

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           MV+F K  G+GN  +V D    +  +T   I  +         D I+++    +      
Sbjct: 1   MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIRLICDRNRGVGSDGILVLEKINNQE--FK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116
           +RI N DGSE +  GNG+R + +++        K F   T+ G     ++  +  R  +I
Sbjct: 59  VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKTI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+       IP+A    ++  +   I       +     +S+GNPH +FFV D++ 
Sbjct: 119 EVEMGKVTFRSSEIPVAGPEREVIDEELKINGE----ILKITCLSIGNPHCVFFV-DEID 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + S G  +  +P+F   +N+ + +V     +++R WERG G T A GS++CA+  A+
Sbjct: 174 EEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 N  V V M GG L I  + +  V + G  ++ ++G+L 
Sbjct: 234 YRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGELS 277


>gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+      
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661]
 gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 295

 Score =  265 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 141/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI   D     +   ++    +     +   D ++ I        D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKVKEEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+ V++   +G     I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169
            V MG P    K IP+     K D +  +      L L+NP+       VV++GNPHA+ 
Sbjct: 121 KVYMGVPKFKLKDIPMVVDGYKEDDEFLN----GELKLKNPYLPKVKLSVVNVGNPHAVI 176

Query: 170 FVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           FVED+    D     L   G  +  H  F E +N+   +V +   + + TWERG G T A
Sbjct: 177 FVEDNNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   ASV+ +  L KTN  V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 237 CGTGTTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290


>gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 278

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 132/285 (46%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D  R   DN    A+           D ++LI     A  D  +
Sbjct: 1   MKFVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGI----LVAKENRDGSISV 118
           R+ N DGSE   CGN +RCV ++    +   + + T ET  GI    L   +     + V
Sbjct: 59  RMFNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELTVVKGAVECVGV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG      K +P     D+                 N  V+SMGNPH + FV DD+  +
Sbjct: 119 DMGRADFAVKNVPFVCDEDEFIASELRADNR----TFNATVLSMGNPHCVVFV-DDVDAF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G  +  +P+F E VN+    +   +++ +R WERG G T ACG+ ACASV A+  
Sbjct: 174 NVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTGACASVAAAAR 233

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 +  + V++LGG L ++   +  + M G A + + G  ++
Sbjct: 234 NTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278


>gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
          Length = 278

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+  GN  ++++ M     N    A            D +M   +   A  D  +
Sbjct: 1   MKFSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI--LVAKENRDGSI---S 117
              N DGS  + CGNG+RC  +F+     +K+  F+ ET  GI  +       G+I    
Sbjct: 59  NYYNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDM +     K +P     + +  +   IG    +F      V MG PH   FVE D   
Sbjct: 119 VDMEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIF----SSVLMGVPHTTIFVE-DFDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVAS 236
           YD+   G+L+ K  +F E  N++ A+VT+ +++ ++TWERG G T  CG+  CA + +A 
Sbjct: 174 YDVNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAH 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                    + +   GG L IE  ++  + M+G+A+    G+ 
Sbjct: 234 KLGKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAETICHGEF 276


>gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
 gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
          Length = 278

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 125/290 (43%), Gaps = 34/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---------NITSDAINALSTDDNTHFDQIMLIHDFQ 56
           + F+K+   GN  +V+D R             ++    +   +       D ++LI    
Sbjct: 1   MRFSKLHASGNDFVVLDNRDGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114
           D       +  N DGS  + CGNG RC VRF   R +  +   FET+ GI+ A+    G 
Sbjct: 61  DPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKGR 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V + +P  D++ + L     +++                   ++ G PH +  VE +
Sbjct: 121 RVKVLLTKPK-DYRDVTLDVKGTRLE----------------GSFINTGVPHFVVRVE-E 162

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           +   D+ S G  +  HP F  +G N++  +V     + +RT+ERGV G T ACG+ A A 
Sbjct: 163 IDSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATAC 222

Query: 233 VVASGCLHKT-NRAVSVKMLGGGLL-IEWHDN-NHVFMTGEAKKEWEGKL 279
            + S          V V   GG LL I +  +   V++ G     ++G+L
Sbjct: 223 AIVSYLKGWVKGSPVDVFTKGGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272


>gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
 gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
          Length = 295

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 139/295 (47%), Gaps = 26/295 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+          +    A        +   D ++ I        D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SI 116
              RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+ V++   +G     I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-------VVSMGNPHAIF 169
            V MG P    K IP+     K D +  +      L L+NP+       VV++GNPHA+ 
Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKEDDEFLN----GELKLKNPYLPKVKLSVVNVGNPHAVI 176

Query: 170 FVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           FVED+    D     L   G  +  H  F E +N+   +V +   + + TWERG G T A
Sbjct: 177 FVEDNGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTA 236

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   ASV+ +  L KT+  V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 237 CGTGTTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290


>gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 284

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 281


>gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241]
 gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241]
          Length = 239

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 16/243 (6%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106
           ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+
Sbjct: 1   MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58

Query: 107 VAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVS 161
            A+    +G ++   +DMG P L    IP+    +    R+ F      + F      VS
Sbjct: 59  TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVS 114

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG G+
Sbjct: 115 MGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173

Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G  
Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVY 233

Query: 280 DIK 282
           + K
Sbjct: 234 EYK 236


>gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
 gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
          Length = 287

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 135/290 (46%), Gaps = 18/290 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  ++F KM+G GN  +  +            ++           D I+LI     A  
Sbjct: 6   RSEGMEFTKMQGCGNDYIYFNCMEQELSEPGPLSVRLSDRHFGIGGDGIVLICRSDIA-- 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR----D 113
           DA +R+ N DGSE + CGN +RCV ++L+       +     ET+ G+     ++     
Sbjct: 64  DAKMRMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQRSGV 123

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S++VDMG   +    +P+     ++      IG  ++    N   VSMGNPH +    D
Sbjct: 124 RSVTVDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVLC-D 178

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   ++   G       +F E VN    ++T   +L +R WERG G T ACG+ ACA+ 
Sbjct: 179 DVEGLEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGACAAA 238

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           VA+           + V++ GG LLI++ D   V MTG A K ++G + +
Sbjct: 239 VAAVENGLCAKGEDIIVRLNGGNLLIKYTDK-TVTMTGTADKVFDGTIKL 287


>gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1]
 gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1]
          Length = 239

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 16/243 (6%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106
           ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+
Sbjct: 1   MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58

Query: 107 VAKEN-RDGSIS---VDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVS 161
            A+    +G ++   +DMG P L    IP+    +    R+ F      + F      VS
Sbjct: 59  TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVS 114

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV DD+    L + G +L  H MF E VN+    + + E ++ R WERG G+
Sbjct: 115 MGNPHAVIFV-DDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173

Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G  
Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVY 233

Query: 280 DIK 282
           + K
Sbjct: 234 EYK 236


>gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
 gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
          Length = 283

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 123/286 (43%), Gaps = 21/286 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K +G+GN  +V+D RG  ++I +     +         D ++ +   +     A + + N
Sbjct: 9   KYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGI--ARMVVHN 66

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK--ENRDGSISVD--MGE 122
            DGS  + CGNG+RC V+FL     +       ET  G+L         G ++VD  MG 
Sbjct: 67  ADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMGP 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L    +P   +        F    V        + VSMGNPH +     D    D + 
Sbjct: 127 ARLVAPNLPSGATG-----QPFLDALVPGHPPLRAYAVSMGNPHMVLL---DQPLEDASR 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP F +  N+   RV   + L +  WERG GLT ACG+ ACAS VA+    + 
Sbjct: 179 LGPLLEHHPSFPDRTNVEFVRV-DSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRL 237

Query: 243 NRAV--SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGK 285
                  V + GG L I    + + + + G     +EG +   +G+
Sbjct: 238 PADAWLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSGR 283


>gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
 gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
          Length = 283

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 13/280 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS----VD 61
            F KM G+ N  +++D R    +   + I  +         +Q++ I    D        
Sbjct: 6   PFIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAY 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +RI N DG EV +CGN  RC+   L           ET  G+L  +      ISV  G
Sbjct: 66  AAMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFG 125

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              +DW+ IPL+R  D +        PV    L++   + +GNPHA+FFV D L  +D+A
Sbjct: 126 PISMDWRRIPLSREVDTLHL------PVQSGPLKDGLALDIGNPHAVFFV-DCLELFDMA 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
               ++   P+F EG+N+  A V    +L L  WER   LT ACG+ AC +  A+     
Sbjct: 179 HHAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAALKRGL 238

Query: 242 -TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            T+  ++V +  G L IE  + +   MTG       G ++
Sbjct: 239 VTSTRIAVHLPAGLLKIEIANGDMAVMTGPVAFCCHGFIE 278


>gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 284

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 123/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I NCDGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 66  VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGIPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281


>gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium
           HF4000_APKG2098]
          Length = 275

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 151/266 (56%), Gaps = 4/266 (1%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM+G+GN  ++ D R    ++T + I  +S  ++   DQ++ I   +D + +AF++  N
Sbjct: 7   YKMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG E+ +CGNG RCV   L      K  +  T  GIL A+ N    +S++MGEP  +W 
Sbjct: 65  SDGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWN 124

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL++  D  +  +  I  ++    R  F +S+GNPH IFFVE D   ++L   G  + 
Sbjct: 125 KIPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVE-DFNQFNLKEIGPKIE 182

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            +  F E  N+++A + +   + ++ WERGVGLT ACG+AACA+ V+   L  + R V +
Sbjct: 183 NYSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDI 242

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274
           + + G L I+W  +N+++MTG+  + 
Sbjct: 243 EFVEGLLNIDWKKDNNIYMTGKVSEV 268


>gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
 gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
          Length = 283

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   + +  
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAALAARLADRHFGVGCDQILTIEAPRSSEA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F  ++       +    G+ +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGTYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      +     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGVPHFEPTQIPLAGFAHAREEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGE 281


>gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 284

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  D   IPLA      D     +    H        VSMGNPHA+  V   +   
Sbjct: 126 AMGMPQFDPPQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  D+  V M+G A   ++G+
Sbjct: 241 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 281


>gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
 gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
          Length = 279

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 34/297 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-------ITSDA--INALSTDDNTHFDQIMLIHDFQ 56
           ++F K++G GN  +VID R            ++ +       +       D ++LI +  
Sbjct: 1   MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS 115
           +   D      N DGS  + CGNG RC VRF   R +      FET+ G++ A+   +G 
Sbjct: 61  NPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYENGR 120

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V +  P    +   L    +++                    ++ G PH +  VE D
Sbjct: 121 KVKVQLTPPS-KPEEKTLTVDGEEVI----------------GVFINTGVPHFVVPVE-D 162

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232
           +   ++   G  +  H  F  +G N++  +  S +++ +RT+ERGV   T ACG+ A A 
Sbjct: 163 VEKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTGATAC 222

Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286
            + S        + V+V    G  L I++ ++   VF+TG   K +EG+L  +  ++
Sbjct: 223 AIVSYLKGLVKKKPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRLSEEVLEY 279


>gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
          Length = 274

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 122/291 (41%), Gaps = 30/291 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
            ++ F KM G GN  +++D R    +  +  + I AL         D ++ +   Q    
Sbjct: 1   MLLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGG 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              +R  N DG E + CGNG RC   F   L    K     FET+ G++ A   +DG+++
Sbjct: 61  IVRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V++  P                   +  +   +     +   ++ G PHA+ F+ D L  
Sbjct: 121 VNLTNPH----------------SMQLFVLNADPTVGADVHFLNTGVPHAVAFL-DKLEG 163

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D++  G  L  H  F  +G N + AR+ S   + +RT+ERGV   T ACG+   A  + 
Sbjct: 164 LDISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALL 223

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              L      + V + GG  L + +         V +TG A   + G + I
Sbjct: 224 HAVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274


>gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
 gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
          Length = 285

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K  G+GN  +V D    +  +T   +  +   +     D I+++    +      +
Sbjct: 1   MEFIKSHGLGNDYIVFDKEKINFPLTEKNVRLICDRNYGIGSDGILILEKINNQE--FKV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RI N DGSE +  GNG+R + +++        K F   T+ G     I+  ++ R  SI 
Sbjct: 59  RIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSIE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+       IP+  S  ++  +   I             +S+GNPH +FFV D++  
Sbjct: 119 VEMGKITFKSSEIPVLGSEREIIDEELKINDETIKVT----CLSIGNPHCVFFV-DEINE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G  +  HPMF   +N+ + +V S + +++R WERG G T A GS++CA+  AS 
Sbjct: 174 EKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASASY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                N  V V M GG L ++ + +  V + G A++ ++G+L 
Sbjct: 234 KKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGELS 276


>gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
 gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
          Length = 279

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 24/287 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
             + F K++G GN  ++ID         D   + A            D ++ +     A 
Sbjct: 1   MTIQFTKLQGNGNDFILIDEWDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK---ENRDG 114
           +   +RI N DGSE + CGNG+RC  ++   +  +       ET  G+L  +   EN   
Sbjct: 61  L--QMRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKT 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I V+MG+P+ D   IP A+   +      H   V          V+ G PHA+ FV D 
Sbjct: 119 YIKVNMGKPLFDRVKIP-AQGHGEFINVPLHGYEV--------SAVNTGVPHAVVFV-DS 168

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
           L   DL     L+    +F++G N++  +   + +L +RT+ERGV G T +CG+ + A+ 
Sbjct: 169 LEDPDLMDAAPLIRFDKVFAKGANVNFVQ-RDMGNLRVRTYERGVEGETLSCGTGSVAAA 227

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +  L     +  VK  GG L I + +++  +M G A+  ++G+++
Sbjct: 228 AIARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273


>gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
 gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
          Length = 265

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM    N  ++ID R   D     A  A         DQ++ I    D S D  I 
Sbjct: 1   MNFIKMHSNANDFVIIDRRNTGDAAIDYAAIA-HRKTGVGCDQVVTIDRS-DGSTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +       +VA++   G I V++G P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+AR  D +        P++      P  V+MGNPH +FFV   +    L   G 
Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    MF +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + M GG LL EW ++    ++    + + G L
Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265


>gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
 gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
          Length = 305

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 10/286 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--THFDQIMLIHDFQDASV 60
           +  ++F KM+G GN  + +D R       +    AL +        D ++ I   Q +  
Sbjct: 23  AMKLEFTKMQGAGNDYIYLDCRHSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDG 82

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETI-RGILVAKENRDGSISV 118
           DA + + N DGSE   CGNG+RCV  +L +  ++++    +T   G        +     
Sbjct: 83  DATMVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRA 142

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYH 177
            MG        +P              +  V          VSMGNPH + F  E     
Sbjct: 143 GMGRFSTRAADLPAVGLGA---GPLLEVPLVAAGQSWQVSCVSMGNPHCVVFCNEAPPAG 199

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             LA +G  +  HP F +G+N+   +  S  SL    WERG G T ACG+ ACA+ V   
Sbjct: 200 VQLADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGACAAAVVGV 259

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 R   + V++ GG L +    ++ V +TG A+  ++G +++
Sbjct: 260 LRGICPRETPIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305


>gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 284

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R G      + A            DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I NCDGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA      D     +      F      VSMGNPHA+  V   +   
Sbjct: 126 AMGIPQFEPTQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVIEV-GRVDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
             +  R V V + GG L I W  +   V M+G A   ++G+
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGE 281


>gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum]
          Length = 381

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 138/380 (36%), Gaps = 99/380 (26%)

Query: 1   MQSSMVDFAKMEGIGNKILVI---D----MRGCHDNITSDAIN----------------A 37
           + S+ + F KM+G GN  +V    D            +S+ +                  
Sbjct: 2   IHSNEITFTKMQGAGNDFIVFKKEDIKVIPNKQFSPDSSEGVRSGASLTIEDLSVISKKL 61

Query: 38  LSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-- 95
                    DQ++++ D  +A  D  + I N DGS+   CGNG+RC  +++     +   
Sbjct: 62  AHRKLGIGCDQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYIIDNSVKSIH 121

Query: 96  ------------------------------SFTFETIRGILVA----------------K 109
                                              T+ G ++                  
Sbjct: 122 DKDNKNNGSSGSGGSSDDGESSSNESENAIVHRVHTLAGTIICSTDKSQIGSKNNGDSYY 181

Query: 110 ENRDGSISVDMGEPIL-----------DWKLIPLARSFDKMDR-DRFHIGPVNHLFLRNP 157
                 + V+MG P L           + + I +       D+        V+     + 
Sbjct: 182 REDTMLVKVNMGNPYLLRTNDNTLLVPNDRTILVPTPNPSTDKPIYLERVQVDERRAIDV 241

Query: 158 FVVSMGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
            +VSMGNPH + F++D           D+   D++  G  LAKH MF +  N+     T 
Sbjct: 242 VLVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTK 301

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN-- 262
                 R WERG G T ACG+ ACA  VA+  + K+   + +S+ M GG LLI+W+ N  
Sbjct: 302 ANHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANEN 361

Query: 263 -NHVFMTGEAKKEWEGKLDI 281
              VF TG A   +   + I
Sbjct: 362 FGKVFKTGPATSVFSSVIKI 381


>gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
 gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
          Length = 271

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 24/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R       N+        +   +   D ++LI +     VD 
Sbjct: 3   IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIENSDK--VDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +  N DGS  + CGNG RC  RF   + +  K   FETI GI+ A+     ++ V + 
Sbjct: 61  KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEAEIMDGFNVKVQLT 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP            FD+       +             ++ G PH +  V+DD+Y +D+ 
Sbjct: 121 EP------------FDEKIDYEIEVLGEK----LTVSSINTGVPHVVVEVKDDIYSFDVV 164

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  +  H ++   G N++  +      L +RT+ERGV   T ACG+ + A+ + +   
Sbjct: 165 KYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSIIAVKK 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              N  V ++   G +L  + ++  VF+ GEA+  + G L+ +  ++
Sbjct: 225 GIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLNKEALEY 271


>gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto
           Rico]
          Length = 265

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R   + +  D             DQ++ I    D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265


>gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
          Length = 295

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 13/280 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQD----ASVD 61
            F KM G+ N  +++D R         D +   ST+     +Q++ I         A   
Sbjct: 18  PFVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAY 77

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +RI N DG EV +CGN  RC+   L    + +    ET  G+L  +      ISV +G
Sbjct: 78  ATMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLG 137

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              ++W+ +P +R  D +        P+    L +   + +GNPH +FFV D L H D+ 
Sbjct: 138 PISVNWQQLPTSREVDTLHI------PLKSGPLSDGVALYIGNPHVVFFV-DRLVHDDIP 190

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            F   +   P+F EGVN+ +A V    S+ L  WER   LT ACG+ AC +  A+     
Sbjct: 191 LFAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGF 250

Query: 242 TNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            N   V V +  G L IE  +++ V MTG       G ++
Sbjct: 251 VNSTKVKVYLPAGELQIELIEHDMVVMTGPVAFCCHGYIE 290


>gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
 gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
          Length = 277

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R   + +  D             DQ++ I    D   D  I 
Sbjct: 13  VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 70

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 71  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 277


>gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Virginia]
          Length = 265

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R   + +  D             DQ++ I    D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P+       P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKV------PLLVPKYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265


>gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153]
          Length = 217

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 73  EVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
               CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P      I
Sbjct: 6   RSGQCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFMPSEI 65

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P      + D D    G      ++    V+MGNPHA+  V DD+    +   G+L+  H
Sbjct: 66  PFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVV-DDVECAPVRETGSLIEPH 123

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSV 248
             F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L   +    V V
Sbjct: 124 RQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDEGKTVEV 183

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + GG L IEW     V MTG A+  +EG+L
Sbjct: 184 ILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214


>gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
 gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
          Length = 283

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 22/286 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +    A            D ++++        
Sbjct: 1   MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113
             F+   N DGS+   CGNG+RC   +L +   ++   F  +T+ G L  K N      D
Sbjct: 60  --FMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S  V+MG+P+ + K + +    ++  R++ +I             + MG  H++ FV +
Sbjct: 118 FSARVNMGKPVFNVKEL-INTEKEQFLREKINIDGKEIEI----SYIFMGTDHSVIFV-N 171

Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D   Y++  FG  +  +  +F + VN++  +V + E +++ TWERG G T ACG+ A AS
Sbjct: 172 DFNDYNIDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTGATAS 231

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
            V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 232 AVLAKTFGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Mississippi]
          Length = 268

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R   + +  D             DQ++ I    D   D  I 
Sbjct: 4   VDFIKMHSNANDFVIIDRRSIGE-VAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 62  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFVAS-VKDCKLEELGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 268


>gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
          Length = 270

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 124/281 (44%), Gaps = 25/281 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  + ID R    +            + + +   D +MLI +   A  D 
Sbjct: 3   IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  NCDGSE + CGNG RC  RF   + +  +  TFET+ GI+ A+     ++ V + 
Sbjct: 61  KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +     +     K+D                   V+ G PHA+ F  +D+ + D+ 
Sbjct: 121 TPFDEKSDYQIELDEKKLD----------------ISSVNTGVPHAVMFC-NDIENIDIM 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G+ +  H  F   G N +   +     L +RT+ERGV G T ACG+   A  + +   
Sbjct: 164 KLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFAVKK 223

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             T   V  K   G +L  + +N  V++ GEA+  ++G+L 
Sbjct: 224 GLTKSPVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGELT 264


>gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
 gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
          Length = 279

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 133/288 (46%), Gaps = 23/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++F KM G GN  ++ID        DN  S+ +  +         D  + +     A  D
Sbjct: 1   MEFVKMHGNGNDFVLIDEFESVKVPDNRKSEFVRVVCDRRFGVGGDGAIFVQKSDIA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG--SIS 117
           A     N DGS  + CGNG+RC  R++  R   K      ET+ G+L      D    I 
Sbjct: 59  AKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDVWFDEMWWIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P    K +P   +   +  + F I           + V+ G PHA+ FV+D  + 
Sbjct: 119 VNMGRPKF-GKDVP---ALKDVWGEVFEIDGRKFEV----YAVNTGVPHAVIFVDDFDFD 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           +        +    +F EG N++ A+V S  S+ +RT+ERGV   T +CG+ +CA  V  
Sbjct: 171 F--YKVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETLSCGTGSCAVAVVG 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             L   ++ V V+  GG L IE   N+ ++M G A K +EG+L   +G
Sbjct: 229 NRLGILDKVVEVQTKGGILKIEV--NDEIYMNGTAAKVFEGRLLELSG 274


>gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 126/306 (41%), Gaps = 38/306 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       +++  A+ AL         D ++ +   +     
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENALDLSPAAVAALCDRRAGIGADGLLHVVRSEAHPEG 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  RAMADEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG ++V MG+ +L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDVTVGMGKALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D  +  DL +    ++    + +GVN+          + LR  ERG G T +CG+ ACA
Sbjct: 166 DDLAHAGDLLA-PPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + +V       +V + GG L+I    +  + MTG A    EG+++    
Sbjct: 225 VAVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE---A 281

Query: 285 KWIKKN 290
           +W++  
Sbjct: 282 EWLENA 287


>gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
 gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 277

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 115/286 (40%), Gaps = 30/286 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNI--------TSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
            K +G GN  ++ID R               ++ +  L     +   D ++LI   ++  
Sbjct: 4   TKYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTK 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118
                   N DGS  + CGNG RC  RF   + +  K   FETI G + A       + V
Sbjct: 64  NHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAHIMDSKRVKV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYH 177
            +       K I +   +                       V+ G PH + FV ED+L +
Sbjct: 124 QLTPYHSHQKNIEIKTEYGTF----------------KGHFVNTGVPHFVIFVDEDELDN 167

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D+   G  +  H  F  +G N++    T   S  +RT+ERGV G T ACG+ + A  + 
Sbjct: 168 LDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAACGIN 227

Query: 236 SGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +  L    +  V +    G LL    +N+ VF+ G   K +EG L 
Sbjct: 228 AYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGMLS 273


>gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
 gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
          Length = 299

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 25/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + FAK+ G GN  +++D         S     AI           D ++ +   Q +  D
Sbjct: 21  LGFAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--D 78

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKE-NRDGSI--S 117
             +R+   DGSE + CGNG+RC+ ++        +SF  ET+ GI+  +   RDGS    
Sbjct: 79  LGMRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWAR 138

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P  +   IP   S D MD                   V+ G PHA+ FV+D    
Sbjct: 139 VDMGVPRFNRPSIPACGSGDLMDEQMGEF---------RVCAVNTGVPHAVIFVDD--LD 187

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            D+      +    +F EG N+   ++ S  SL +RT+ERGV G T +CG+ A AS   +
Sbjct: 188 IDIYEAAPPIRHCSVFPEGANVDFVKLGS--SLQIRTFERGVEGETFSCGTGAVASASVA 245

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +      V V+  GG L+I + + +  FM G A   +  ++D
Sbjct: 246 RRMGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288


>gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 272

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 26/288 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           V F KM G GN  ++ID R    + T   + +  +     +   D ++LI       VD 
Sbjct: 4   VSFWKMSGSGNDFIIIDNRTLFIDKTDFRNTVAKICKRSMSVGADGVILIEPSNK--VDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGNG RC  RF     +  K   FE++ GI+ A+     S+ V + 
Sbjct: 62  KWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKLT 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P                D       P+  L L N   V+ G PH    V DD+Y++D+ 
Sbjct: 122 RPS---------------DLKLNIDIPLTDLTL-NGSFVNTGVPHIAIEV-DDIYNFDVK 164

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  +  H +F  +G N++  ++   +++ +RT+ERGV   T ACG+ + A        
Sbjct: 165 KYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILHKK 224

Query: 240 HKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                 V +   GG  L+I    +++V++ GEA+  ++G L  ++ K+
Sbjct: 225 SILKSPVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272


>gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2]
 gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2]
          Length = 270

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  +V++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +   +   +P   S DK+    + +     + L+    V +GNPH + F    L   D  
Sbjct: 120 KVSFNEVWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L  
Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   +V    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTVVFKYGSLTMK-EENGNIIMQGAATLVARGEY 266


>gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
 gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
          Length = 283

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 22/286 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  R   +    +    A            D ++++        
Sbjct: 1   MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113
             F+   N DGS+   CGNG+RC   +L +   ++   F  +T+ G L+ + N      D
Sbjct: 60  --FMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S  V+MG+P+ + K + +    ++  R++ ++             + MG  H++ FV +
Sbjct: 118 FSARVNMGKPVFNVKDL-INTEKEQFLREKINVDGTEIEI----SYIFMGTDHSVIFV-N 171

Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D   Y++  FG  +  +  +F + VN++  +V   + +++ TWERG G T ACG+   AS
Sbjct: 172 DFNDYNIDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGTGVTAS 231

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
            V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 232 AVLAKTFGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
 gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 135/292 (46%), Gaps = 33/292 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         +     +S        D ++LI      + D  +
Sbjct: 7   MRFTKMQGIGNDYVYVNCFEETVADPAAVARFVSDRHFGIGSDGLILIGPS--GTADCRM 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK---ENRDGSIS 117
            + N DGS    CGNG+RCV ++          R+S T ET+ G+   +   E ++G  +
Sbjct: 65  DMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIEFTVEEKNGRFT 124

Query: 118 -----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
                VDMGE  L  +L            +  ++   ++ F+     +S+GNPHA++F+ 
Sbjct: 125 ARLLTVDMGEARLTSEL-----------PEPINVDGRDYSFVG----ISVGNPHAVYFM- 168

Query: 173 DDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           D +    L   G     HP F  + VN    ++     + +R WERG G T ACG+ A A
Sbjct: 169 DSIDDLRLDRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTGATA 228

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           S  A+  +  T   V V++ GG L I    ++ H+FMTG A + + G +DI 
Sbjct: 229 SAAAAILMGYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIP 280


>gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 274

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/266 (31%), Positives = 131/266 (49%), Gaps = 4/266 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R  + N++ D I  +   D    DQ++ I +      DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKNS--GKKDAELE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+     K     T  G L +K   +  +  ++G    
Sbjct: 61  FYNSDGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKT 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPL +  +        I   N+        +++GNPH +FF+ DD+  YDL   G 
Sbjct: 121 NWDEIPLKKDLNT-KNLNIKIISKNNNEHIGGTSINVGNPHVVFFI-DDIEDYDLKKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H  F E  N+++A+V +   + ++ WERG GLT ACG+AACA+VVA+     T++ 
Sbjct: 179 EIENHNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQ 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271
             V+   G L I    +N + M G  
Sbjct: 239 ADVEFALGKLTISIDKDNSIHMKGPV 264


>gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
 gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
          Length = 292

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 119/296 (40%), Gaps = 28/296 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           ++ +++F KM G GN  +V+D R      + +   A            D ++ +   +  
Sbjct: 3   KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSIS 117
                +R  N DGS    CGNG RC+ RF   + ++     FET  GI  A+   D    
Sbjct: 63  DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEVPDDPQAP 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +  P                + +     P++  F  +   +  G  H + FV   +  
Sbjct: 123 VRLYLP-----------PAGTYEPNPRLATPLDTQF-ESVAFIWTGTEHLVCFVP-AVEA 169

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTS----LESLDLRTWERGV-GLTAACGSAACA 231
             +A +G  L   P +   G N+    V         L  RT+E+GV   T ACG+ A A
Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229

Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
           + + +    +  +  ++V M GG L + +   +     +F+ G A+  + G +++ 
Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285


>gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10]
 gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10]
          Length = 294

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/275 (36%), Positives = 156/275 (56%), Gaps = 12/275 (4%)

Query: 11  MEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GNK ++ D+RG     N+++D++ A++      FDQ++++ D    + DAF+RI N
Sbjct: 28  MNGAGNKFILADVRGRAGVFNLSADSVKAMARAH--PFDQLLVLEDSD--TSDAFMRIWN 83

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG EV +CGNG R     +       + + +T  G+L+A++    S+SVDMGEP LDW 
Sbjct: 84  SDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDWT 143

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL R  D +  D       + + +  P  VSMGNPHA+FF+  D+ ++ +   G ++ 
Sbjct: 144 EIPLVRPMDTLQLD--FAVEKDGVRIEAPGAVSMGNPHAVFFIR-DIANFPVTGLGPVVE 200

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
             P+F E VN   A++     + LR WERG G+TAACG+ ACA++VA+      +R   +
Sbjct: 201 HAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAMI 260

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
              GG L +EW   +NHV +TG  +   EG +++ 
Sbjct: 261 HADGGDLSVEWRKSDNHVILTGPVED--EGPIELD 293


>gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 279

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R      T+    A        +   D ++LI + ++A  D 
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSEEA--DF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +  N DGS  + CGNG RC  RF      + R+   F T  G++ A+ +   ++ + M
Sbjct: 63  SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISG-TAVLLTM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P                 R   H+       L     V  G PHA+ F  D++    +
Sbjct: 122 TPPGQC--------------RLNLHLAGPTGEEL-TLHTVDTGVPHAVLFC-DEIATVPV 165

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
             +G+    HP F   G N++     +   L +RT+ERGV   T ACG+ A A+ + +  
Sbjct: 166 KEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASR 225

Query: 239 LHKTNRAVSVKMLGG-GLLIEWHDNNH----VFMTGEAKKEWEGKLDIKT 283
           L +     +V   GG  L+I + D++     V + G A   ++G L  + 
Sbjct: 226 LGRAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSLHPEA 275


>gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
 gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
          Length = 272

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K++G GN  ++ID         D   + A            D ++ +     A  D
Sbjct: 3   IAFTKLQGNGNDFVLIDEHDGEVIPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA--D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVA---KENRDGSIS 117
             +R++  D SE   CGNG+RC+ ++       ++S + ET  GI+       + + + +
Sbjct: 61  VRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEFTAT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + M  P  +   IP A + +  +  R              +  + G PHA+ FV+ ++  
Sbjct: 121 ITMPAPAFERSAIPAAGNGEYKEEIR----------NFTVYAANTGVPHAVVFVK-EIGA 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            D+A+ G  +  HP F EG N++       +++ +RT+ERGV G T +CG+ A AS   +
Sbjct: 170 VDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATASAAVA 229

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K    V V+  GG L+I +     V M G A+  + G +
Sbjct: 230 HHLGKVGDTVRVETKGGPLVIRF--GETVTMEGPAETVFSGVI 270


>gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3]
 gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3]
          Length = 318

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 32/311 (10%)

Query: 1   MQSSM---VDFAKMEGIGNKILV---IDMRGCHDNITSDAINALSTD-DNTHFDQIMLIH 53
           M+S     ++F KM  +GN  +V   +D     + +  +  N +     +   D ++ + 
Sbjct: 5   MESERFMNLEFTKMHALGNDYIVFNELDGIIVPEELKGEFSNKICKRGFSVGADGVIFVQ 64

Query: 54  DFQDASVDA--FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK 109
               A  DA    RI N DGSE + CGNG+RC  +++  R   K      ++  G+ +++
Sbjct: 65  VPSTADYDADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISE 124

Query: 110 ENRDGS-------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIG-PVNHLFLRNP---- 157
              + S       + V MG P    K IP+       D +  ++  PVN   L+      
Sbjct: 125 MEFNESNNEVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEA 184

Query: 158 ---FVVSMGNPHAIFFVEDDLYHYD-----LASFGNLLAKHPMFSEGVNLSIARVTSLES 209
               V ++GNPH +  ++++  + +     L   G  +  H  F E +N+    + + + 
Sbjct: 185 LKLSVANVGNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKE 244

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMT 268
           + + TWERG G T ACG+   +SV     L KT   V   + GG L IE  +N + ++M 
Sbjct: 245 IQIITWERGAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMK 304

Query: 269 GEAKKEWEGKL 279
           G A+  ++G L
Sbjct: 305 GGAEISYDGIL 315


>gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
 gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
          Length = 285

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 10/270 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G+GN  +V D       +TS+ +  +  D N       ++          ++++ N D
Sbjct: 8   YHGLGNDYVVFDPNKNELELTSENVRMIC-DRNEGLGSDGVLEGPILKEDGMYVKVWNPD 66

Query: 71  GSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPILD 126
           GSE ++ GNG+R   ++L     +++K+F   T  G +     N DGS + V MG+    
Sbjct: 67  GSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMGKLSFW 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+ 
Sbjct: 127 SDDIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGDY 181

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
                 F + +N  I +V   E + +  +ERG G T A G+ ACA+   +  L  TN  V
Sbjct: 182 AELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYKLGMTNNKV 241

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V+M GG L +E  ++ +VFMTG+     +
Sbjct: 242 IVQMPGGELQVEIEEDWNVFMTGDVFYVAK 271


>gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
 gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
          Length = 281

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 137/287 (47%), Gaps = 22/287 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  ++++ +   +    D    A            D ++++   +  + 
Sbjct: 1   MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLIL---KYVAN 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK---ENRDGS 115
             F+   N DGS+   CGNG+RC   +L +    +  +FT +T+ G L  +   EN    
Sbjct: 58  MPFMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             V+MGEP+ D K +        ++++RF     +          + MG  H++ FV +D
Sbjct: 118 AKVNMGEPVFDVKKL------INIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-ND 170

Query: 175 LYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              Y++   G+ +  +  +F + VN++  +V    ++++ TWERG G T ACG+ A AS 
Sbjct: 171 FSDYNIDDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASA 230

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           V +         ++V + GG L+I++    +  +MTG ++K  EG+ 
Sbjct: 231 VLARIYGYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQY 277


>gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 286

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           +   K  G+GN  L+ D       +T ++I  +   +     D +++            +
Sbjct: 3   ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLV--GPVLGQDKLEV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120
           +I+N DGSE +  GNG+R   ++L     +++  F   T+ G    +  N DG  I V M
Sbjct: 61  KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       IP+     ++  +    G + +        VS+GNPH + ++ +D+     
Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYRVT----CVSIGNPHCVIWL-NDISKDLA 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E +N  + +V    ++++  +ERG G T A G++ CA+  A+  + 
Sbjct: 176 CRIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYRMG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            T+  + V M GG L +E   +  V MTGE      G+  +
Sbjct: 236 LTDPKMYVHMPGGVLEVEIEKDGSVLMTGEVGYV--GRFTL 274


>gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
 gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
          Length = 290

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 126/282 (44%), Gaps = 12/282 (4%)

Query: 1   MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           M+ + +     +  G+GN  +V D       +T + +  +  D N       ++      
Sbjct: 1   MEVTKMKVVLERYHGLGNDYVVFDPNKNELGLTPENVRMIC-DRNAGLGSDGVLEGPVMK 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGIL-VAKENRDGS 115
               F+++ N DGSE ++ GNG+R   ++L     +++K F   T  G + VA  N DGS
Sbjct: 60  EEGMFVKVWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDGS 119

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V MG+       IP+     ++  +    G      L     V++GNPH +  +  +
Sbjct: 120 RLRVSMGKLSFYSDDIPVTGERREVINEDMVFG----RTLYPVTCVTIGNPHCVIPMR-E 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G+       F   +N  I +V   E++ +  +ERG G T A G+ ACA+  
Sbjct: 175 ISKPLVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAAG 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            +  L  TN  V V M GG L +E  D+ +V+MTG+     +
Sbjct: 235 VAYKLGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDVFYVAK 276


>gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
 gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
          Length = 274

 Score =  255 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 38/287 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  ++ID         D     A+           D ++ I   +    D
Sbjct: 13  IAFTKLHGNGNDFILIDEMDQVIIPDDMKAQFAVVYCDRRFGIGGDGVLFI--SKSDKAD 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGS 115
             +R+   D SE + CGNG+RC+ ++   +   K+K+F+ ET+ G++  +     + D  
Sbjct: 71  IRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDFM 130

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            ++DMG  + D                         +     + V+ G PHA+ FV  ++
Sbjct: 131 ATIDMGTAVYDESR---------------------EIDGMTVYSVNTGVPHAVIFV-GNV 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
               +      +  HP F +G N++  ++T    + +RT+ERGV G T +CG+ + AS +
Sbjct: 169 DGIAINEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASAL 228

Query: 235 ASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +    KT    V VK +GG L I     +   MTG A   + G++ 
Sbjct: 229 IAAKTGKTHGSVVHVKTVGGPLDITV--GDIPQMTGPAATVFVGEIQ 273


>gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E]
 gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii]
 gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22]
          Length = 270

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 18/279 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++F KM G+GN  ++++ R      N++  A N          DQ ++       + D
Sbjct: 3   NKINFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYE----ENND 58

Query: 62  AF-IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            + + I N DGS  + CGN +RC+ + +     +++ T    +  L+        ISV++
Sbjct: 59  FYTMIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNV 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G    +   +P   S DK+    +       L L+    V +GNPH I F    L   D 
Sbjct: 119 GNVSFNETWMP---SRDKI----WKFAERYMLDLKEMLCVDIGNPHLIIF--SKLEPQDK 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L    +F++GVN++ A V     + L  WERG GLT ACGS ACAS  A   L 
Sbjct: 170 TIIGQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLG 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +   +V    G L I   ++ ++ M G A     G+ 
Sbjct: 229 FVHSPSTVVFEYGNL-IMREEDGNIIMQGAATFVMRGEY 266


>gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
 gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
          Length = 289

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K + +GN   +++ R     +T   I A  +       D I+L+ +       A +
Sbjct: 1   MKFEKWQALGNDYAIVEQRDLPFELTPARIRAFCAGHFGVFADGILLLSESDQPGFVADL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I N DGSE +  GNG R  + +L  R       F+ +T  G +        +  VDMG 
Sbjct: 61  KIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMGR 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180
             L  K  P   S     R +   G     F      VS+GNP     V+  + L   DL
Sbjct: 121 AKLTSKDFP---SGPDDGRAQLTAGQHQWSFQH----VSIGNPQCSIRVDSLEALDALDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  H  F    N+S     + + +  R +ERGVG T + G+ A  + VA     
Sbjct: 174 PAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLRG 233

Query: 241 KTN-----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                     V+V + GG L +E  ++ HV +TG A   + G L 
Sbjct: 234 GGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTLS 278


>gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
 gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
          Length = 274

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 28/288 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           + F K+ G GN  ++ID     + I  D     A            D ++ +    D   
Sbjct: 3   IPFVKLHGNGNDFILIDEYAG-EKIPDDMKGHFAAVYCDRKFGIGGDGVLFLLKSNDG-- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK----ENRDGS 115
              +R+   D SE + CGNG+RC+ ++       +   T +T+ G ++ +    E+ D  
Sbjct: 60  -IRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDEDGDFM 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+M  PI +   IP     D  +    +            F V+ G PHA+ FV  DL
Sbjct: 119 AEVEMTPPIYESPGIPAKGKGDFHEIINGY----------EVFAVNTGVPHAVIFVR-DL 167

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
              DL      +     F  G N++   +T   S+ +RT+ERGV   T +CG+ A AS  
Sbjct: 168 DSLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGATASAA 227

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  L KT   V V+ +GG L I   D    FM G A   + G L + 
Sbjct: 228 IAYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGMLHLD 273


>gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
 gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
          Length = 289

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 38/306 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       ++   A+ AL         D ++ +    +    
Sbjct: 2   STRIPFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGIGGDGLLHVVRSAEHPEA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  AQMAGEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG ++V MG+ +L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDVTVGMGKALLPEGDVTVSVGDRS----------------WPARSVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            DDL H          +    +  GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 -DDLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + A        +V + GG L+I    +  + MTG A    EG++D    
Sbjct: 225 VAVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID---A 281

Query: 285 KWIKKN 290
            W++  
Sbjct: 282 DWLENA 287


>gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
          Length = 282

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 118/287 (41%), Gaps = 27/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLIHDFQD--ASV 60
           + F KM+G GN  +VID R     + +  D   A+         D I  + +       V
Sbjct: 9   MPFVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGV 68

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D      N DGS  + CGNG RC  R      +        T  G + A+    G + V 
Sbjct: 69  DFIWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQ 128

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +         I L  +   +                    V+ G PH + FV DD+   D
Sbjct: 129 LTPAKDARLDIALPAADKTLRA----------------HFVNTGVPHTVIFV-DDVAKVD 171

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           L   G  +  H  F  +G N + A+V   +++ LRT+ERGV   T ACG+ A A+V  S 
Sbjct: 172 LPDLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSH 231

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T   V+V   GG  L I   D ++VF+ G A   + G L +++
Sbjct: 232 KLGLTGPEVNVTTSGGEQLTISV-DGDNVFLAGAATVTFTGDLLLES 277


>gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5]
 gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5]
          Length = 270

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    +       + L+    V +GNPH I F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDKV----WAFAERYMIDLKETICVDIGNPHLIIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L  
Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   ++    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 304

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  L+ D     + +  + I  L   +     D I  +          ++
Sbjct: 25  MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 82

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120
           ++ N DGSE +  GN +R    +L     ++ +SF+  T  G +  +  NR+G  I + M
Sbjct: 83  KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 142

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+   D + I L     +   + F+ G   +        VS+GNPH +  + D++    +
Sbjct: 143 GQLSFDSEKIGLTGPKREALHEYFNFGGEEYA----CTCVSVGNPHCVI-ITDEISRAKV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+  A+  L 
Sbjct: 198 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLG 257

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG L  +  +N +V M G  K     +L
Sbjct: 258 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 296


>gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12]
 gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 278

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 124/289 (42%), Gaps = 25/289 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           ++S  + F KME  GN  ++ D R      I   A            D I+       A 
Sbjct: 7   LRSKKMKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA- 65

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG--- 114
            D  +   N DGS  + CGNG+RC+ R++     + + + T ET  G+       D    
Sbjct: 66  -DMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQ 124

Query: 115 --SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             S+ V MG+   +           +   +R  I     +F R    V++G PH    VE
Sbjct: 125 VSSVQVKMGKAEWE----------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVE 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D +   +L  +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C +   + 
Sbjct: 171 DFMKDEELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSC 230

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V    L K +        GG + +E  D+  V + G+A   + G +D+
Sbjct: 231 GVILQHLQKISGEAHFYTEGGDVFVEVKDD-VVMIYGKANFVFAGDIDV 278


>gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
 gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
          Length = 270

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    + +     + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDKI----WELAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERGVG T ACGS AC S  A   L  
Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAGLKLGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    V    G L ++  +N ++ M G AK   +G+ 
Sbjct: 230 IHAPSMVVFKHGILTMK-EENGNIIMQGSAKLVAQGEY 266


>gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 285

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 121/283 (42%), Gaps = 14/283 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             +   K  G+GN  L+ D       +T +A+  +   +     D +++           
Sbjct: 1   MKITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLV--GPILGENKM 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGI--LVAKENRDGSISV 118
            ++I+N DGSE +  GNG+R   ++L     +++  F   T+ G   +         I V
Sbjct: 59  EVKILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG        IP+     ++  +    G + +        VS+GNPH + ++ +D+   
Sbjct: 119 SMGHLSFWSDEIPMTGPRREVLNETLTFGSIPYRVT----CVSIGNPHCVIWL-NDISKD 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G        F E VN  + RV    ++++  +ERG G T A G++ CA+  A+  
Sbjct: 174 LVCRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  T+  + V M GG L +E  ++  V MTG+      GK  +
Sbjct: 234 MGLTDPKMYVHMPGGVLEVEIEEDVSVLMTGDVGYV--GKFTL 274


>gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
 gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
          Length = 270

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    +       + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A      
Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   ++    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246]
 gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246]
          Length = 270

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +    +++  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    +       + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKEIICVDIGNPHVVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A      
Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   ++    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 285

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +    ++T + I  +         D I+L            +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           RI N DGSE +  GNG+R   R+L     +    F+ ET+ G++ +     G ++ V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +      F       ++GNPH +  + DD+      
Sbjct: 120 KVSFWSRDIPVVGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINADVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG +    P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L  
Sbjct: 175 NFGPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  + V+M GG +LI+  D+ H+ MTG   K  +G+L 
Sbjct: 235 CDSEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGELS 273


>gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
 gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
          Length = 269

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 16/277 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           SS ++F KM G+GN  ++I+ +      +++  A +          DQ ++  +  D+  
Sbjct: 2   SSKINFVKMHGLGNDFVIINKKDLTGTYDLSQLAKSMAKRHLGIGCDQFIIYEEQNDS-- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++
Sbjct: 60  -YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNV 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G    +   +P   S DK+    +       + L+    V +GNPH + F    L   D 
Sbjct: 119 GGVSFNESWMP---SRDKI----WEFAERYMIDLKETICVDVGNPHLVIF--SKLELQDQ 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L 
Sbjct: 170 KIVGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGLKLG 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +    V    G L I   +N ++ M G A    +G
Sbjct: 229 FIHSPCEVVFKHGSL-IMKEENGNIIMQGPASLVAKG 264


>gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
 gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
          Length = 287

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 41/299 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDN--THFDQIMLIHDF 55
           +++    F KM G GN  +V+D R     I+ +    +  L+         D ++LI + 
Sbjct: 3   VENERTRFLKMTGSGNDFIVLDNRAQ--GISPEQGRELARLACRRKLSVGADGLILIEN- 59

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRD 113
            D  VD   R  N DGSE + CGNG RC  RF      + +   +F T+ GI+ A+  ++
Sbjct: 60  -DPEVDFRWRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEAEI-KE 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + + M  P      + +                           ++ G PH + F+E+
Sbjct: 118 PRVKIRMTPPHGLEPDLNVEAEQRSFRL----------------HFINTGVPHVVCFLEN 161

Query: 174 D--LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
           D  L   ++  +G LL  H  F   G N++ A V     + +RT+ERGV   T ACG+ +
Sbjct: 162 DRALEEMNVFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACGTGS 221

Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWH--------DNNHVFMTGEAKKEWEGKL 279
            AS + +         V V+   G  L I +         + + V++ G+AK  +E +L
Sbjct: 222 IASALVAAAKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEAEL 280


>gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 306

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 13/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIH-DFQDASVDA 62
           M  F K + +GN  +VID R      T  DA+     +     D ++        AS   
Sbjct: 1   MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPVHASRPV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGI--LVAKENRDGSISV 118
            +RI N DGSE +  GNG+R     + +R     + FT  T+ G   +   +   G +SV
Sbjct: 61  QLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAGVVSV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MGEP  +   +P+             +             +++GNPHA+   E      
Sbjct: 121 GMGEPCFEAAAVPMLGITGLAVEQPLLVDGRQLTVT----ALNLGNPHAVVLTEHPTREL 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
              + G L+A+H  F    N+   RV    ++ +  WERG G T A GS+ CA+   +  
Sbjct: 177 -ACALGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLASGSSGCAATAVAHR 235

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L + +    ++V+M GG + +    +  V MTG A+    G L
Sbjct: 236 LGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278


>gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5]
 gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5]
          Length = 270

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 118/278 (42%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P            +       + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMPN-------RDKVWEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A      
Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   ++    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
 gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
          Length = 270

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ +L  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHNDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    +       + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDKV----WEFAERYMIDLKETICVDIGNPHVVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WERGVGLT ACGS AC S  A      
Sbjct: 171 IVGERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGSFAAGLKHGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   ++    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379]
 gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
          Length = 288

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52
           M +S + F K  G  N  +++        + +  +  L         D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAALVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 53  -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R    +L     ++    T  T  G     
Sbjct: 61  EARSMADEAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG+ +L    + ++                          V+MGNPHA+ 
Sbjct: 121 LAKNGDITVSMGQALLPGASVTVSVDGRS----------------WPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+D  +  DL S         ++ EGVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVDDLDHAGDLFS-APPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + AV+       V + GG L+I  H +  V MTG A    EG +D  
Sbjct: 224 CAVAVATARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVIDP- 282

Query: 283 TGKWIKKN 290
              W++  
Sbjct: 283 --AWLETA 288


>gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500]
          Length = 428

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 143/400 (35%), Gaps = 123/400 (30%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------------- 36
            V F KM G GN  ++         I S+  N                            
Sbjct: 28  RVSFTKMHGAGNDFVLFKREDIKRTIVSNKANGHGHTNGNSNGNNNGNGTSNGNGNYSYV 87

Query: 37  ------------ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                         +       DQ++++ D   +  D  + I N DGS+   CGNG+RC 
Sbjct: 88  PSLDELAYISKSIANRKLGVGCDQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCF 147

Query: 85  VRFLTS------------------RMKRKSFTFETIRGILVAKENR-------------- 112
            +++T                      R S    T+ GI++    +              
Sbjct: 148 SKYITDNRIPSIYNEDGSINSDRVYHDRPSQRVHTLSGIIITYPQKQQHQHEGVEEVEEN 207

Query: 113 -----------------------------DGSISVDMGEPILDWKLIPLARSFDKMDRDR 143
                                           I V+MG P +       ++     +R  
Sbjct: 208 GKDNHNNNHNNNLNNNTQQQQQLNKILSLTKFIKVNMGTPYILRTNEERSQLLVVDNRSV 267

Query: 144 FHIGPVNHLFLRNPFV----------VSMGNPHAIFFVEDD---------LYHYDLASFG 184
            +I   +  F++  +V          VSMGNPH + F++D+         L   D++  G
Sbjct: 268 MNINTKSIHFMKTIYVTPTVSLRCVLVSMGNPHCVIFLKDNQGSIADESQLESMDISYIG 327

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--T 242
             L    +F +  N+    V +   L +R WERG G T ACG+ ACA  VAS    K   
Sbjct: 328 RKLESDGLFIDSCNVEFVSVIAQNKLKVRVWERGAGETLACGTGACAVAVASILTGKSVI 387

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           + ++SV+M GG L+I+W+ ++N V+ TG A   +  +++I
Sbjct: 388 SESISVEMPGGELIIDWNKEDNKVYKTGPATTVYSSEVNI 427


>gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C]
 gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C]
          Length = 291

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M  + + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MTHTTLSFLKGHGTENDFVIVPDPDNSVDLPPTAVAALCDRRAGIGADGVLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L     ++       T  G+    
Sbjct: 61  EAAHMADEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++ G ++V MG  +L    + ++                          V+MGNPHA+ 
Sbjct: 121 LDKTGDVTVSMGRALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVE  L H          +    +  GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVES-LDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+         +T R V  +V + GG L+I  H +  V MTG A     G+ +  
Sbjct: 224 CAVAVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE-- 281

Query: 283 TGKWIKKN 290
              W+ + 
Sbjct: 282 -AAWLTET 288


>gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
 gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
          Length = 284

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 12/276 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           +   K +G+GN  LV+D       +    I  L         D I+      +      +
Sbjct: 7   ITMIKYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGILY--GPIEIDGKMGV 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISVDM 120
           RI N DGSE    GNG+R   ++L     +K + F+ +T+ G +  +   NR     V M
Sbjct: 65  RIFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRVKM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+     + IP+     ++  + F      +        +++GNPH I F+ + +     
Sbjct: 125 GKASFISREIPVTGEVREVINESFTFHNKEYKAT----CLTVGNPHCIIFM-NQVTPELA 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA+  L 
Sbjct: 180 KELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYRLG 239

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
                V+V   GG + I+  D++ ++MTG      +
Sbjct: 240 LVENRVNVNQPGGMIQIDIKDDDTIYMTGTVGYVAD 275


>gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1
 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 285

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +     +T + I  +         D I+L            +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           RI N DGSE +  GNG+R   R+L     +  K F+ ET  GI+ +     G ++ V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +      F       ++GNPH +  + DD+      
Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG +   +P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L  
Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  + VKM GG +LI+  D+ H+ MT    K  +G+L 
Sbjct: 235 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGELS 273


>gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
 gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
          Length = 285

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 18/292 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           MVDF K  G+GN  +VID    + ++    + I  +         D I+     +D  + 
Sbjct: 1   MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS--IS 117
              +I+N DGSE +  GNG+R    ++     +    F   T  G +  +     +  I 
Sbjct: 61  F--KILNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTNLIK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +G+       IP+     ++      +     +       V++GNPH I  ++D +  
Sbjct: 119 VSIGQYSFINHKIPVKLDCTEVLNQEIELLGKKEIIN----CVNIGNPHCIL-IKDKISK 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G +L  HP+F    N+   ++    ++ +  WERG G T A G+++CA+   + 
Sbjct: 174 DLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASCTAY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            L   +  V+V+M GG + +E  +   VF+TGE  +  +G   +   ++IKK
Sbjct: 234 ILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKG---VFASEFIKK 281


>gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 274

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/266 (33%), Positives = 140/266 (52%), Gaps = 4/266 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA I 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P +
Sbjct: 61  FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W+ IPL++  D  D  +  I   N+        +++GNPH IFFV DD+  +DL + G 
Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   + 
Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271
             ++   G L I   + N + M G  
Sbjct: 239 TDIEFALGSLTISIDERNSIHMKGPV 264


>gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 270

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 117/272 (43%), Gaps = 9/272 (3%)

Query: 11  MEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D+R G      + A            DQI+ I   +     A   I N 
Sbjct: 1   MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGIWNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGS  + CGNG RCV  +L      + + F  ++       +       +V MG P  + 
Sbjct: 61  DGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAVAMGVPQFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPLA      D     +      F      VSMGNPHA+  V   +    +   G LL
Sbjct: 121 TQIPLAGFAHARDEYALPVHGETVRF----GAVSMGNPHAVVEV-GRVDAAPVERVGALL 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+        +  R V 
Sbjct: 176 QQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVERDVQ 235

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGK 278
           V + GG L I W  +   V M+G A   ++G+
Sbjct: 236 VSLPGGELRIRWPGDQEQVVMSGPAVFVFDGE 267


>gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
 gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
          Length = 277

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 115/285 (40%), Gaps = 24/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  L+ID     R         A            D ++ +        D
Sbjct: 8   IPFCKLHGNGNDFLLIDELEGTRIPDQMKGEFAELYCDRRFGVGADGVLFL--SAGTEGD 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKE---NRDGSIS 117
             +RI   D SE + CGNG+RC  R+   +    ++   ET  G+L       +      
Sbjct: 66  LRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGDSTFLAQ 125

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + M +P  D   IP          +  +   +  L +      + G PHA+  V DDL  
Sbjct: 126 IHMPDPAFDCPGIPATG-------EGVYQQTIAGLTV---HATNTGVPHAVVIV-DDLAA 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            D+      +  HP F +G N++  +VT  +++ +RT+ERGV   T  CG+ A AS   +
Sbjct: 175 VDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGATASAAVA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L      V+V+  GG L I         M G A   + G++ +
Sbjct: 235 HRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277


>gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132]
 gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132]
          Length = 283

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 27/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R     +++    A    +       D +  + +  + S+  
Sbjct: 8   VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKEN----RDGSIS 117
                N DGS  + CGN  RC  +   +  +      F T  G + AK       +G + 
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDGPEEGRVK 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +  P+     I               +  V+   L        G PH + FV DD+  
Sbjct: 128 VQLTPPLRTETDI---------------VIDVDGSPL-TVHFTDTGVPHTVVFV-DDVKS 170

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D+   G  +  H  F   G N++ A+V   +++ LRT+ERGV   T ACG+ A A+ + 
Sbjct: 171 VDIMDLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLL 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  L  T     +   G  +L  + +N  VF+ G A+  ++G+  +K
Sbjct: 231 AHTLGLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277


>gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 270

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D    
Sbjct: 3   SKINFVKMHGLGNDFVIVNKRDLSSSHDLSQLAKNMADRHTGIGCDQFIIYEEHDDF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S D++    +       + L+    V +GNPH + F    L   D  
Sbjct: 120 SVSFNEAWMP---SRDRI----WEFAERYMIDLKETICVDIGNPHLVIF--SKLEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F++GVN++ A V     + L  WE+GVGLT ACGS AC S  A   L  
Sbjct: 171 IVGEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGLKLGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   +V    G L ++  +N ++ M G A     G+ 
Sbjct: 230 IHSPSTVVFKHGNLTMK-EENGNIIMQGAATLVARGEY 266


>gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
 gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
          Length = 289

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/296 (31%), Positives = 145/296 (48%), Gaps = 28/296 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++      +        LS        D ++LI     A  D  +
Sbjct: 1   MHFTKMEGLGNDYVYVNCFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFSM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDGSISV 118
            + N DGS  + CGNG+RCV +++      + +  + ET+ GI   +    + R   ++V
Sbjct: 59  AVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVTV 118

Query: 119 DMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P +    + +  +  +KM  +R  +      F+R    VSMGNPHA+ +    L  
Sbjct: 119 DMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIR----VSMGNPHAVVW----LDG 170

Query: 178 YDLAS---------FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
            D+A           G L+ KH  F  G N+   RV   + + +R WERG G T ACG+ 
Sbjct: 171 LDVACVTDGEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGTG 230

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
           ACA+  A    + TN  V+V++ GG L IE+  N   + MTG A+K ++G++DI +
Sbjct: 231 ACAAAAACMAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDIFS 286


>gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 280

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  L+ D     + +  + I  L   +     D I  +          ++
Sbjct: 1   MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAK-ENRDG-SISVDM 120
           ++ N DGSE +  GN +R    +L     ++ +SF+  T  G +  +  NR+G  I + M
Sbjct: 59  KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+   D + I L     +   + F+ G   +        VS+GNPH +  + D++    +
Sbjct: 119 GQLSFDSEKIGLTGPKREALHEYFNFGGEEYA----CTCVSVGNPHCVI-ITDEISRAKV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+   +  L 
Sbjct: 174 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG L  +  +N +V M G  K     +L
Sbjct: 234 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 272


>gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
 gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
          Length = 285

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 12/275 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
             G+GN  LV D       +    +  L   +     D ++             +++ N 
Sbjct: 8   YHGLGNDYLVFDPNHNELKLDEANVKMLCDRNEGLGADGVL--EGPILKEDGMHVKVWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125
           DGSE ++ GNG+R   ++L     +++K+F   T  G +     N DGS + V MG+   
Sbjct: 66  DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLSF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 126 WSDEIPVIGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L  TN  
Sbjct: 181 YSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGLTNSK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           V V M GG L +E  D+ +V+MTG+     +  L 
Sbjct: 241 VIVHMPGGELQVEVEDDWNVYMTGDVFYIAKVTLS 275


>gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5]
          Length = 278

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 128/276 (46%), Gaps = 21/276 (7%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF KM   G+  +++D+RG  + I  +    L        F++++++ D +DA+    + 
Sbjct: 4   DFQKMHANGDDFVIVDLRGQENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAAT--QLT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF---ETIRGILVAKENRDGSISVDMGE 122
             N DGS + +CG+  R V      ++      F   +T RG+L      DG ISVDMG+
Sbjct: 62  FWNSDGSMLDACGSATRGVAW----KLAGNRLFFRRRQTNRGLLTCFGELDGRISVDMGK 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+L W+ +P+A+  D +                 P   SMGNPH  FF+E DL   D   
Sbjct: 118 PLLHWRDVPIAQEADTLKL----------PLPGAPSACSMGNPHCTFFIE-DLEAVDAKM 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     HP+F +  N+   +V S   + LR WERG G+    GS +C +VV        
Sbjct: 167 RGLEFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGLL 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +V V+  GG + + W     VF+TG     + G 
Sbjct: 227 TSSVDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGT 262


>gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 287

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 122/284 (42%), Gaps = 10/284 (3%)

Query: 1   MQS-SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M++ S + F KM G GN  +V+D+R   D  + +   AL+        D ++ I + + A
Sbjct: 4   MRTPSTLPFTKMHGAGNDFVVLDLRDGPDP-SPELCRALADRHKGVGCDLVLGIREPRSA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116
              A   I   DGS    CGNG RCV  +       +   F  ++  G          + 
Sbjct: 63  RAVAAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPRFALDSPSGTHEVDVLDADTF 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V +  P    + IPL   F        +   +          VSMGNPHA+  V DD  
Sbjct: 123 RVALAVPRFAPESIPL---FGHDGEQDLYEADLGDGTRVRFAAVSMGNPHAVIEV-DDTA 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G  +    +F   VN+  ARV S + + LR  E G G T ACGS ACA+    
Sbjct: 179 TAPVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVL 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
               + +R VSV + GG L I W D+   V MTG A   +EG  
Sbjct: 239 MRRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282


>gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
 gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
          Length = 264

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 132/287 (45%), Gaps = 32/287 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             ++F KM G GN  +VID R    N+  + ++A+ T       D ++LI   + A  D 
Sbjct: 1   MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVD 119
            +   N DG     CGNG RC V F      R     + FE   G   A+     S+ + 
Sbjct: 59  RMNYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLH 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  P              K  RD  H G        +   V  G+PHAI +V D+L   D
Sbjct: 119 MLPP--------------KNFRDDLHAGA------WSCHFVDTGSPHAIAYV-DNLDQMD 157

Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           + + G  +  +  +F EG N++   VT+ ++L +RT+ERGV   T ACG+   A+ + S 
Sbjct: 158 VFTEGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSY 217

Query: 238 CLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
            L K  +  V V +  G  L++ ++D  + +++ G A+  ++G + +
Sbjct: 218 RLGKVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264


>gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
 gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
          Length = 268

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 16/265 (6%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
            + +   A    + +     D ++LI   + A V   +R+ N DGSE +SCGNG+RCV +
Sbjct: 8   EEELALVAEKVSNINTGIGADGMILICPSEVAPV--KMRMFNSDGSEGKSCGNGLRCVAK 65

Query: 87  FLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDK-M 139
           +      +    FT ET+ GI+ A+   +      + +DMG P L    +P+    +   
Sbjct: 66  YAYEHKLVAETVFTIETLAGIVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGETPF 125

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
            R+ F      ++F      VSMGNPHA+ FV DD+    L + G +L  H MF E VN+
Sbjct: 126 IREDFLYNNHRYVFTG----VSMGNPHAVIFV-DDVEEAPLTTLGPVLETHEMFPERVNV 180

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLI 257
               + +   ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L+I
Sbjct: 181 EFIEIVNGNEMNFRVWERGSGITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDLMI 240

Query: 258 EWHDNNHVFMTGEAKKEWEGKLDIK 282
            W +  +V M G A+    G  + K
Sbjct: 241 AWAEEGNVLMKGPAEVICRGVYEYK 265


>gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7]
          Length = 307

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 35/305 (11%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD---------AINALSTDDNTHFDQIMLI 52
           ++  + F KM G+GN  + +D      +  +          A+           D ++ I
Sbjct: 5   ENMRLFFTKMHGLGNDYIYMDGFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFI 64

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110
              ++A+    + + N DGS    CGNG+RC  R+         +SF  +T  GI     
Sbjct: 65  QPSEEAA--FRMEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGIRSVYI 122

Query: 111 NRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            +        S+ VDMG      +   L ++ ++         PV +        VS GN
Sbjct: 123 RKTDEGEHITSVRVDMGVMANLGEQRVLLKAKEEWTDFTGGSFPVQY--------VSAGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA-----RVTSLESLDLRTWERGV 219
            H IFFVE+ +  + L     L+   P   +GVN+  A      VT  + + +R  ERG 
Sbjct: 175 RHCIFFVEN-VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGS 233

Query: 220 GLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G T ACG+ ACA   A+        +  V ++  GG L   +  +  + M G A+  +EG
Sbjct: 234 GETMACGTGACAVTAAAVWQGYCRYDENVEIRQPGGILTTAYLADGRMLMEGPAEYVFEG 293

Query: 278 KLDIK 282
             DI 
Sbjct: 294 YFDIP 298


>gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 295

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 10/285 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +   + + K   +GN  LVI       ++ ++ +  +         D  +L+   +  S 
Sbjct: 13  KQKKIKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDG-ILVGPLESESS 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-IS 117
           D  +RI N DGSE +  GNG+R   RFL  +  +    FT ET+ G +V +   +G  ++
Sbjct: 72  DFRLRIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVT 131

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+       IP A    ++ R+   I      +       ++GNPH +   E     
Sbjct: 132 VEMGKVSFLSTKIPAAGEEREVLREHMDISGATFEYC----AATVGNPHCVILCEKSTPE 187

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G L+   P F    N+    +    ++ +  WERG G T A GS++ A+   + 
Sbjct: 188 L-ARCYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAY 246

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            L   N  ++V M GG L I +  +    MTG   +  EG +D +
Sbjct: 247 KLGFCNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMDPE 291


>gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 274

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 141/266 (53%), Gaps = 4/266 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P +
Sbjct: 61  FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W+ IPL++  D  D  +  I   N+        +++GNPH IFFV DD+  +DL + G 
Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFV-DDIEAFDLKNIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   + 
Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271
             ++ + G L I   + N + M G  
Sbjct: 239 TDIEFVLGSLTISIDERNSIHMKGPV 264


>gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.]
          Length = 282

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 35/287 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R        + S      +   +   D  +LI +   A  D 
Sbjct: 11  IHFFKMSGSGNDFIIIDNRENLIEDKGLASFITKVCARRMSVGADGFILIENCDSA--DF 68

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +  N DGS  + CGNG RC   F   +++ +   +F T  GI+ A+   DG + V+M 
Sbjct: 69  KWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVT-DGRVKVNMM 127

Query: 122 EPILDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +P        IPL +    +                    ++ G PH +  + DD+   D
Sbjct: 128 DPTYCKYDYQIPLKKGPITV------------------SSLNTGVPHVVI-ITDDIEGAD 168

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  H  +   G N++     S  ++ +RT+ERGV G T ACG+ + AS + + 
Sbjct: 169 VDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASALVAA 228

Query: 238 CLHKTNRAVSVKMLG-GGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           C +K    + V     G L I +  +N     +++ G+A+  ++G+L
Sbjct: 229 CKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275


>gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch
           sediment']
          Length = 274

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 123/282 (43%), Gaps = 30/282 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID R  H +I     A        +   D ++L+     A  D  +R
Sbjct: 6   FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVA--DFRMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I+N DGSE + CGNG RCV RF     +      FET+ GI+ A  +    + + +  P 
Sbjct: 64  ILNADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWVDG-SKVKLQISRP- 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + I L +S          +    H+       ++ G PH + F   DL    + + G
Sbjct: 122 ---QGIRLHQS--------IEVDGAAHVV----HSINTGVPHVVLF-STDLEAVPVRTLG 165

Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +  HP F   G N++ A      +L +RT+ERGV   T ACG+   AS + +  L   
Sbjct: 166 RTIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLV 225

Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
              V V++  G  L +    N      VF  GE +  ++G+L
Sbjct: 226 ASPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267


>gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ]
          Length = 265

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 25/283 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASV 60
           S+ + F K  G GN  +V+D R    +    A+             D ++  ++      
Sbjct: 4   SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSD--EY 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +  +N DG EV  CGNG R +  F    +  +  F F+T  G+  +   + G I ++
Sbjct: 62  DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M                     +   I   + +  ++ F +  G PH ++F+ D L +  
Sbjct: 122 M-----------------TQLSEINTIDVSDLITSKDSFFMDTGVPHCVYFL-DSLDNIP 163

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           L  +G  +     FSEG N +   +     L +RT+ERGV G T ACG+ A A   A   
Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L+K    + + + GG L + + ++  V+++G+ +K + G  ++
Sbjct: 224 LYKQIDHIKIDVPGGELEVLF-EDGKVYLSGKVEKIFSGVFEV 265


>gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
 gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
          Length = 310

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           +   V F K  G+GN  +VID     + +++D +  +   +     D I+    F  +  
Sbjct: 22  KGGQVQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILF-GPFAGSRG 80

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENR-DGSI 116
           D  +RI N DGSE +  GNG+R   R+L       +   F  +T  G++ A  +  DG I
Sbjct: 81  DFGLRIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLI 140

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG    +   IP+     ++      +   + ++       ++GNPH +    D++ 
Sbjct: 141 TVDMGTVSFEAADIPVTGITGEVLNQPVCVKGRDLVYCG----ATIGNPHCVVLC-DEIS 195

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                  G+ L   P F    N+   +V    ++ +  WERG G T A GS+A AS   +
Sbjct: 196 DQMALELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSASASAAVA 255

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +   ++++ V M GG L I   D+  + +TG A K   G L 
Sbjct: 256 RRIGVCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGTLS 299


>gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 267

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 25/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R      I   A            D I+       A  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA--DMKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117
              N DGS  + CGNG+RC+ R++     + + + T ET  G+       D      S+ 
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDEKNQVSSVQ 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+   +           +   +R  I     +F R    V++G PH    VED +  
Sbjct: 119 VKMGKAEWE----------KEFQEERVEIEGREFVFYR----VTVGVPHIAILVEDFMKD 164

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L  +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C +   +  V   
Sbjct: 165 EELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQ 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L K +        GG + +E  D+  V + G+A   + G +D+
Sbjct: 225 HLQKISGEAHFYTEGGDVFVEVKDD-VVMIYGKANFVFAGDIDV 267


>gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
 gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
          Length = 301

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 35/301 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDN-THFDQIMLIHDFQD----- 57
           V+F KM G GN  ++ID R       +      AL         D ++++   Q      
Sbjct: 20  VEFCKMTGTGNDFILIDNRRARLAPALMPALAKALCCRRRSVGADGLIVLSPSQRVDAAL 79

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSI 116
             +D      N DGS  + CGNG RC  RF  S  +      F+T+ G + A        
Sbjct: 80  GKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIGLAGPELIFDTLAGPIRAWV------ 133

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
               G   +  +L P    +D +   R  IG            V+ G PHA+  V DDL 
Sbjct: 134 ----GRQTVTLELTPPTGWYDDL---RLEIGGR----TMTIHGVNTGVPHAVVPV-DDLS 181

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D+ ++G  +  H  F   G N++         L++RT+ERGV   T ACG+ A AS +
Sbjct: 182 SADVKNWGREIRFHRHFAPAGTNVNFIAAR-HGRLEVRTYERGVEDETLACGTGAVASAL 240

Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIKK 289
            +G L      ++V +  G  L I +  +      V + G A   ++G L      W+  
Sbjct: 241 MAGRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGAFAWLAN 300

Query: 290 N 290
            
Sbjct: 301 Q 301


>gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
 gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
          Length = 262

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 119/283 (42%), Gaps = 31/283 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G GN  L+ D       ++   A  A         D I++      AS D  
Sbjct: 1   MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI-SVDM 120
           +   N DGS  + CGNG+RC+ R+   R  +       ET  G+        G    V+M
Sbjct: 59  MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLEGGRASRVEM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178
           G P                      +  + H F+R    VSMGNPHA+ F+  E+ +   
Sbjct: 119 GSPAFGAP-----------------VALLGHRFVR----VSMGNPHAVAFLPAEEAVERL 157

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL S G  + + P F    N+    V     L +R WERG G T A GS +CA+  A+  
Sbjct: 158 DLRSVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIR 217

Query: 239 LHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279
                  V V + GG + +EW   + + ++M G A+   EG+L
Sbjct: 218 EGLARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260


>gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 288

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52
           M +S + F K  G  N  +++        + +  +  L         D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 53  -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                  + + F+   N DGS  + CGNG+R    +L     ++    T  T  G     
Sbjct: 61  EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG  +L  + + ++                          V+MGNPHA+ 
Sbjct: 121 LAKNGDITVSMGRALLPGESVTVSVGDRS----------------WPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+D  +  DL +    ++   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVDDLDHAGDLLT-APPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I  H +  + MTG A    EG +D  
Sbjct: 224 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 281

Query: 283 TGKWIKKN 290
              W++ +
Sbjct: 282 -RAWLETS 288


>gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 204

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 9/210 (4%)

Query: 75  QSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
             CGNG RC  RF  L     ++     T  G +V     D  + V+MGEP  +   +P 
Sbjct: 1   SQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVP- 59

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
              F     ++ +I       +    VVSMGNPH +  V D++    + + G +L  H  
Sbjct: 60  ---FRANKAEKTYIMRAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVETLGPVLESHER 114

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252
           F E  N+   +V   E + LR +ERG G T ACGS ACA+V            V V++ G
Sbjct: 115 FPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPG 174

Query: 253 GGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           G L I W    H ++MTG A   ++G + +
Sbjct: 175 GRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 204


>gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 284

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +     +T + I  +         D I+L            +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDGILL-GPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           RI N DGSE +  GNG+R   R+L     +  K F+ ET  GI+ +     G ++ V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +      F       ++GNPH +  + DD+      
Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLDEGIFTFC----AATIGNPHCVILL-DDINSEVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-------ACGSAACASVV 234
           +FG +   +P+F    N+   +V    ++ +  WERG G T                +  
Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSA--------AAA 226

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  L   +  + VKM GG +LI+  D+ H+ MT    K  +G+L 
Sbjct: 227 TAHKLGLCDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGELS 272


>gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 270

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 119/272 (43%), Gaps = 9/272 (3%)

Query: 11  MEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D+R G      + A            DQI+ I   +     A   I N 
Sbjct: 1   MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGS  + CGNG RCV  +L      + + F  ++       +    G  +V MG P  D 
Sbjct: 61  DGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQFDP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPLA      D     +    H        VSMGNPHA+  V   +    +   G LL
Sbjct: 121 PQIPLAGFAHARDEYALPV----HGDTVRFGAVSMGNPHAVVEV-GRVDAAPVERVGTLL 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V      +  R V 
Sbjct: 176 QQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVERDVQ 235

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           V + GG L I W  D+  V M+G A   ++G+
Sbjct: 236 VSLPGGELRIRWPCDHEQVVMSGPAVFVFDGE 267


>gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24]
          Length = 289

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 120/305 (39%), Gaps = 38/305 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       ++   A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  RGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           ++G ++V MG  +L    + ++    +                     V+MGNPHA+ FV
Sbjct: 122 KNGDVTVGMGRALLPAGDVEVSVGERE----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D  +  DL +     A    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 ADLAHAGDLYA-PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + A        +V + GG L+I    +  + MTG A    EG+ D    
Sbjct: 225 VAVATARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD---S 281

Query: 285 KWIKK 289
            W++ 
Sbjct: 282 AWLEG 286


>gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
          Length = 279

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 126/290 (43%), Gaps = 34/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALSTDDNTHFDQIMLIHDFQ 56
           + F K+ G GN  +V D R              +    I   +       D ++LI    
Sbjct: 1   MRFVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114
           D   D   +  N DGS    CGNG RC VRF     +  +   FET+ G++ A+   +G 
Sbjct: 61  DPQNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGK 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V + EP   ++ + +  +  ++                +   ++ G PH +  V DD
Sbjct: 121 RVKVLLTEPH-SYREMQIKVNGTEI----------------SGSFINTGVPHFVMLV-DD 162

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           L ++D+ ++G  +  H  F   G N++  +  S  S+ +RT+ERGV   T ACG+ A AS
Sbjct: 163 LENFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATAS 222

Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
            + +        + V VK  GG  L I++      VF+ G   K ++G L
Sbjct: 223 AIVAYQKGLVKKKPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272


>gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii]
 gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii]
          Length = 289

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 129/284 (45%), Gaps = 16/284 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F +  G+GN  +V+D       +T   I  +         D I+ +   + A  D  +RI
Sbjct: 5   FFRGHGLGNDYVVMDPTELTFTLTPGKIRGICDRHWGLGSDGILALVPSKKA--DFGLRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI-----LVAKENRDGSISVD 119
            N DGSE +  GNG+R   R+L    + K+++FT ET  G+      + +     + +V+
Sbjct: 63  YNPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVE 122

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177
           MG        +P   S D++ +           F      VS+GNPH + F +  +    
Sbjct: 123 MGRATFQPSALPCTLSVDELIQQPIEAAGRALQFTG----VSVGNPHCVIFKQAGETWTR 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L + G +L  HP+F +  N+ +A  T  + + +  WERG G T A GS++CA+  A+ 
Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L      V+VKM GG L IE   +  + M G   +   G L  
Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGALSP 282


>gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
 gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
          Length = 289

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 120/305 (39%), Gaps = 38/305 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       ++   A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHPEA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  RGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           ++G ++V MG  +L    + ++    +                     V+MGNPHA+ FV
Sbjct: 122 KNGDVTVGMGRALLPAGDVEVSVGERE----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D  +  DL +     A    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 ADLDHAGDLYA-PPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + A        +V + GG L+I    +  + MTG A    EG+ D    
Sbjct: 225 VAVATARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD---S 281

Query: 285 KWIKK 289
            W++ 
Sbjct: 282 AWLEG 286


>gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 263

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 9   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E   + IL   +  D SI V+MG+P+L
Sbjct: 63  YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV D +    L S G 
Sbjct: 123 KWHKIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S      T +
Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258


>gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
 gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
          Length = 271

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 33/289 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ +++ F KM G GN  +VID R G +  +    I  L T       D ++++   ++ 
Sbjct: 1   MKRNIL-FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSEN- 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSI 116
             D  +R  N DG     CGNG RC+ +F        +K   FE       A    DG I
Sbjct: 59  -HDFAMRYYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEI 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            ++M  P              K  RD F +     +F      V  G+PHAI +VE+ L 
Sbjct: 118 KLNMLVP--------------KDFRDAFSVDGHECVF------VDTGSPHAILYVEN-LD 156

Query: 177 HYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
              +   G  +  +   F  G N++  ++ S E + +RT+ERGV   T ACG+ A AS +
Sbjct: 157 ETHVVEIGQKIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASAL 216

Query: 235 ASGCLHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
            S  L K +   V V +  G  L I + +   HV ++G A + ++G++ 
Sbjct: 217 MSYRLGKVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEVS 265


>gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
 gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
          Length = 300

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52
           + +S + F K  G  N  +++        + +  +  L         D ++ +       
Sbjct: 13  VSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 72

Query: 53  -HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                  + + F+   N DGS  + CGNG+R    +L     ++    T  T  G     
Sbjct: 73  EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 132

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG  +L  + + ++                          V+MGNPHA+ 
Sbjct: 133 LAKNGDITVSMGRALLPGESVTVSVGDRS----------------WPARNVNMGNPHAVA 176

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+D  +  DL +    ++   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 177 FVDDLDHAGDLLT-APPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 235

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I  H +  + MTG A    EG +D  
Sbjct: 236 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 293

Query: 283 TGKWIKKN 290
              W++ +
Sbjct: 294 -RAWLETS 300


>gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
 gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
          Length = 285

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 12/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   +  G+GN  LV D       +  + +  L   +     D I+             +
Sbjct: 3   ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGIL--EGPLMEEKQMAV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGS-ISVDM 120
           RI N +GS  +  GNG+R   ++L     +++K +T  T  G + +   N +GS + V M
Sbjct: 61  RIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       IP+     ++  +    G      L     VS+GNPH +  ++ ++    +
Sbjct: 121 GKLSFWSDEIPVIGERRQVINEDMVFG----RTLYPATCVSIGNPHCVIPMQ-EISEPLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G    +   F   +N  +  V  + ++ + T+ERG G T A G+ ACA+   +  L 
Sbjct: 176 CKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAYKLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            T+  V V M GG L +E  D+   +MTG+     
Sbjct: 236 LTSNKVIVHMPGGELQVEIGDDWEAYMTGDVFYVA 270


>gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi]
 gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi]
          Length = 262

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 8   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 61

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E   + IL   +  D SI V+MG+P+L
Sbjct: 62  YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV D +    L S G 
Sbjct: 122 KWHKIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DSVNEIPLQSLGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S      T +
Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257


>gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
 gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
          Length = 270

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 119/279 (42%), Gaps = 18/279 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++F KM G+GN  +++  R      N++  A N          DQ ++  ++ +    
Sbjct: 3   NKINFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYEEYNNV--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T    +  L+        ISV++G
Sbjct: 60  YTMIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
               +   +P         RDR       + L L+    V +GNPH I F    L   D 
Sbjct: 120 NVSFNETWMP--------SRDRIWAFAERYMLDLKETMCVDIGNPHLIIF--SKLEPQDQ 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L    +F +GVN++ A V     + L  WERG GLT ACGS AC S  A   L 
Sbjct: 170 KIIGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLG 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +   +V    G L I   ++ ++ M GEA     G+ 
Sbjct: 229 FVHSPSTVVFKYGNL-IMQEEDGNIIMQGEATFVMRGEY 266


>gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
 gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
          Length = 291

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 38/309 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M  + + F K  G  N  +++        + + A+  L         D ++ +       
Sbjct: 1   MTQTSLSFLKGHGTENDFVIVPDPDNAIELPATAVAKLCDRRAGIGGDGVLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L     ++       T  G+    
Sbjct: 61  EAKAMAGEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++ G ++V MG        + ++                          V+MGNPHA+ 
Sbjct: 121 LDKRGDVTVSMGRAEFPEGEVTVSVGDRS----------------WPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV D L            +    +  GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FV-DSLDDAGTLYDAPPFSPASAYPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      +          +V + GG L+I  + +  + MTG A     G+ D  
Sbjct: 224 CAVAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD-- 281

Query: 283 TGKWIKKNE 291
              W+ +  
Sbjct: 282 -AAWLAETA 289


>gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
 gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
          Length = 310

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 117/321 (36%), Gaps = 49/321 (15%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           +  + F K  G  N  +++        +++ A+  +         D ++ +         
Sbjct: 4   APRLSFLKGHGTENDFVIVPDLDGSLELSAAAVARICDRRAGIGGDGLIRVVRSSAHPEA 63

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L      +       T  G+      
Sbjct: 64  RAMADQAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRVHIA 123

Query: 112 RD---------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156
           +D               G I+V MGE  L                    +          
Sbjct: 124 KDVGDAAQPGEATAGPDGPITVVMGEATL------------PGPGPEAEMTVTVGEQSWP 171

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
              V+MGNPHA+ FV+D     DL +    +     +  G N+          + +R  E
Sbjct: 172 ARNVNMGNPHAVAFVDDLAQAGDLLA-APAVRPASAYPHGTNVEFVVDRGPRHVAMRVHE 230

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTG 269
           RG G T +CG+ ACA +VA+      + AV       +V + GG L+I    +  V MTG
Sbjct: 231 RGSGETRSCGTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTG 290

Query: 270 EAKKEWEGKLDIKTGKWIKKN 290
            A    EG+LD     W++ +
Sbjct: 291 PAVIVAEGELDP---AWLRTD 308


>gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 225

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 15/232 (6%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAK 109
                   + I+N DGS    CGNG+RC  +++     +K +S T ET  G    IL  +
Sbjct: 3   NSDVAQIKMIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLE 62

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            +    ++++MG P  + + IP AR  +++   R  +    +    N   + MG PH I 
Sbjct: 63  NHSIKEVTINMGTPSFEVEKIP-ARFNEEVINKRIKVEKKEY----NITSMLMGVPHTII 117

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           F    L  Y++   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +
Sbjct: 118 F--GKLEDYNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGS 174

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CASV+A+  L  T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 175 CASVIAANKLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225


>gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 264

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 95/269 (35%), Positives = 139/269 (51%), Gaps = 17/269 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +  + F KM G GN  ++ID R  ++         ++   +   DQ+++I     A+   
Sbjct: 6   TDKIPFVKMHGTGNSFVIIDSRSANN--LDWNYRQIADQGS--CDQVIIITMSNAAN--C 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMG 121
           F+ I N DGS  + CGN  RCV   +      +  T E     IL   +  D SI V+MG
Sbjct: 60  FMHIYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P+L W  IPL+   D +        P+    L+ P  V++GNPH +FFV D++    L 
Sbjct: 120 KPLLKWNEIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQ 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH- 240
           + G  L  H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS     
Sbjct: 173 NLGPKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKC 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
              +  SV + GG LLIEW  N  + MTG
Sbjct: 233 LATKQTSVHLPGGHLLIEWSKN--ILMTG 259


>gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
 gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
          Length = 284

 Score =  245 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 33/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K  G GN  ++ID R        +  A +          D ++L+   +    D  
Sbjct: 16  IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLE--RSDRADFV 73

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +RI N DG+E + CGNG+RC+ +FL    ++   FT E +        + DGS+SV M  
Sbjct: 74  MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133

Query: 123 -PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P + W  I L+     + R  FH+             +  G PHA   VE  L  +DL 
Sbjct: 134 APEISW-DIELS-----IGRKTFHVD-----------FLDTGVPHATLSVE-KLSAFDLD 175

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVT--SLESLDLRTWERGVG-LTAACGSAACASVVASG 237
           + G  +  H  F  +G N+ +  +       + +RT+ERGV   T ACG+ A A  + + 
Sbjct: 176 AIGPKIRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAW 235

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
              +    + +++  G  L  +   +    + + M G A+  + G   I
Sbjct: 236 TKEQIANPIRIQVASGDILEFKISGSLGRIDQIVMKGPAEFIFRGNFSI 284


>gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
 gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
          Length = 277

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 120/290 (41%), Gaps = 35/290 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQD 57
             + F KM G GN  ++I+ R             + +  +     +   D ++LI   +D
Sbjct: 2   KKIPFFKMNGSGNDFIIINNRRNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--KD 59

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSI 116
              D   R  N DGSE + CGNG RC  RF   + +   S  F T+ G++ A+     ++
Sbjct: 60  NEYDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNTV 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V + +P              K  ++   +  V+         ++ G PHA++FV     
Sbjct: 120 RVQLTQP--------------KDYKENIELDGVDMPL----SFINTGVPHAVYFVSSVDV 161

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
                + G     H  F  EG N++   V +  +L +RT+ERGV   T ACG+ A AS +
Sbjct: 162 VDV-KTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASAL 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLL-----IEWHDNNHVFMTGEAKKEWEGKL 279
            +    K    V V    G  L     IE  +   V++ G+A   + G +
Sbjct: 221 IAILKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270


>gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 274

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F+K+   GN  ++ID R      ++  + A        +   D ++L+   + A  D 
Sbjct: 3   INFSKLTAAGNDFILIDNRENIIAQEDCQALAKKLCDRKYSIGADGLILLE--KSACKDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            ++  N DGS    CGNG R + +F     +      FET  G++ A+   +  + +D+ 
Sbjct: 61  KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K I +  +  + D +                 ++ G PH + FV DD+ + D+ 
Sbjct: 121 NPRDLKKDIKVEVNGKEFDVN----------------FINTGVPHVVIFV-DDIENIDVF 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  + +H  F   G N++  +V    +L +RT+ERGV   T ACG+   AS + S   
Sbjct: 164 GYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIISVLK 223

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
                 V V   GG  L +   + N    +V + G A   ++G + I++
Sbjct: 224 GFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272


>gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
 gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
          Length = 281

 Score =  244 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 21/289 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHD-FQ 56
           M    V F KM+G GN  ++ID R     +      A          + D +  I +  +
Sbjct: 4   MFGKSVPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPE 63

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            + +D   +  N DGS  + CGN  RC  R   +           I G      +  G I
Sbjct: 64  GSGLDFVWQFYNSDGSRAEMCGNASRCAGRLAHALE---------IAGEQHVFGSDAGPI 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V +  P L+   + L      + +    I    + +       + G PH +  V  D+ 
Sbjct: 115 KVQV-FPELEEVKVQLTPPQGLVVKQTLEIDGEEYEY----HFANTGVPHVVVQVA-DVE 168

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D+   G     H  F   G N++  ++   +SL +RT+ERGV   T ACG+   A  V
Sbjct: 169 EVDIKKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYACGTGVSAVQV 228

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                  T+ AV V+  GG +L    ++ +VF+ G A+  + G++ +++
Sbjct: 229 TLYEQGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLES 277


>gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
 gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
          Length = 279

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 29/288 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           + ++F K+ G GN  ++ID     R   D  +  +      +     D ++ +   + A 
Sbjct: 2   NQLEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA- 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRD---GS 115
            D  +R+   DGSE + CGNG+RC+ +         + F+ ET+ G++  +  RD     
Sbjct: 61  -DIGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVRRDRKGFW 119

Query: 116 ISVDMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             V+MG P  +   IP     +F K+    F +             V+ G PHA+ FVE+
Sbjct: 120 ARVEMGIPRFERSEIPADGEGTFLKVPLHGFEV-----------SAVNTGVPHAVIFVEN 168

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
                 +      +     F EG N++  R+     L++RT+ERGV   T +CG+ + A+
Sbjct: 169 --LDIPVEQIAPKIRHSSCFPEGANVNFVRL--GNHLEVRTFERGVEAETLSCGTGSVAA 224

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +  L      V V   GG L I +      FM G A     G + 
Sbjct: 225 AAVARRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPAVTVCRGVVS 271


>gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 262

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID R  ++         ++   +   DQ+++I     A  D F+ I
Sbjct: 8   NFIKMHGTGNNFVIIDSRSTNN--LDWNHRQIADQSS--CDQVIIITMSNAA--DCFMHI 61

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS  + CGN  RCV   + S    +    E T + IL   +  D SI V+MG+P+L
Sbjct: 62  YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV D++    L + G 
Sbjct: 122 KWHEIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS        +
Sbjct: 175 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVAQ 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257


>gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 263

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID R  ++         ++   +   DQ+++I     A  D F+ I
Sbjct: 9   NFIKMHGTGNNFVIIDSRSTNN--LDWNHRQIADQSS--CDQVIIITMSNAA--DCFMHI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS  + CGN  RCV   + S    +    E T + IL   +  D SI V+MG+P+L
Sbjct: 63  YNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPLL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV D++    L + G 
Sbjct: 123 KWHEIPLSTECDTLHL------PIELEMLKDPVAVNIGNPHIVFFV-DNISEIPLRNLGP 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS        +
Sbjct: 176 KLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSLVAQ 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258


>gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653]
          Length = 303

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 39/305 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           +  + F K  G  N  +++        +++ A+  +         D ++ +         
Sbjct: 4   APRLRFLKGHGTENDFVIVPDLDGRLELSAAAVARICDRRAGVGGDGLIRVVRSSAHPEA 63

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L      +    T  T  G+      
Sbjct: 64  RGMAAEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEEGDLTIATRAGLRHIHIA 123

Query: 112 RD--------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           +         G+++V MG+ +L     P       +  +             +   ++MG
Sbjct: 124 KAAPEGAPDSGAVTVGMGKAVL-----PEPGPDGDVTVEV-------GDRTWSARNINMG 171

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+ FV DDL           +     + +G N+        + + +R  ERG G T 
Sbjct: 172 NPHAVAFV-DDLDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGETR 230

Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +CG+ ACA +VA+      + AV       +V + GG L+I    +  V MTG A    E
Sbjct: 231 SCGTGACAVMVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVAE 290

Query: 277 GKLDI 281
           G+LD 
Sbjct: 291 GELDP 295


>gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 268

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 130/289 (44%), Gaps = 33/289 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F K+ G GN  +VID R    ++T   IN L T       D ++LI     A+   
Sbjct: 1   MKITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIEPS--ATFSF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118
            ++  N DG     CGNG RC V F  +         ++TFE       A    + ++ +
Sbjct: 59  SMKYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFEANGNRYDAWVLGEENVKL 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            M  P             + +D +               F ++ G+PHAI ++  DL   
Sbjct: 119 KMLAPQ---------GFKENLDLEG-----------EQCFALNTGSPHAIIYIS-DLDAV 157

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+   G+ +      F +G N++   +TS  SL LRT+ERGV   T ACG+ A A+ + S
Sbjct: 158 DVNKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMS 217

Query: 237 GCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
             L K +   V V +  G  L +E++++ + VF++G AK  +EG   I+
Sbjct: 218 HKLGKISSTTVQVTVKSGDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266


>gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
 gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
          Length = 279

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 120/287 (41%), Gaps = 33/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R      + +   A        +   D + LI     A  D 
Sbjct: 8   IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DGSE + CGNG RCV RF     +      FET+ GI+ A    D + ++ M 
Sbjct: 66  KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMRFETLAGIVEATV-ADTTATIKMT 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P         +  FD+    +  +G      L     V  G PHA+ FV DD+   D+ 
Sbjct: 125 SPH--------SFRFDR----QIEVGGQ----LFMVHSVDTGVPHAVIFV-DDIDEVDMV 167

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  HP+F   G N++    T      +RT+ERGV   T ACG+   A  + +   
Sbjct: 168 GLGRQLRHHPVFAPMGTNVNFVGRTGDG-FRIRTYERGVEDETMACGTGVVAGALIAAVK 226

Query: 240 HKTNRAVSVKMLGG-GLLIEWHDN-----NHVFMTGEAKKEWEGKLD 280
              +  V++   GG  L +++        + V + G A   + G+L 
Sbjct: 227 GYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGELT 273


>gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18]
          Length = 275

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 4/266 (1%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM+G+GN  ++ D R    ++T D I  +S   N   DQ++ I + ++ +    +   N
Sbjct: 7   YKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDNDKNNNT--SLTFYN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG E+ +CGNG RC    L      K  +  T  GIL A+      + ++MG+P   W 
Sbjct: 65  SDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQPNFKWG 124

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL++  D     +  I   +   +   F +S+GNPH IFFVE D   ++L   G  + 
Sbjct: 125 KIPLSKEMDN-KNLKIKINSTDDKEIEGGFSLSVGNPHIIFFVE-DFNKFNLKEIGPKIE 182

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            H  F E  N+++A + + + + ++ WERG GLT ACG+AACA+ VA   L    R V +
Sbjct: 183 NHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNERYVDI 242

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +   G L I+W+ +N+++MTG+  + 
Sbjct: 243 EFQEGLLNIDWNADNNIYMTGKISEV 268


>gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC
           100599]
          Length = 280

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 29/291 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           M    + F KM G GN  +V+D R        +++   N      +   D  ML+ +   
Sbjct: 1   MFERGIPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNI 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSI 116
           A  D  +R  N DGSE + CGNG RC+ RF           +FET+ GI  A+ N++   
Sbjct: 61  A--DFKMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQN--- 115

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           SV +  P +  + + L + ++            +       + V +G PH ++FVE+ + 
Sbjct: 116 SVKVKFPDVPLQALKLNQPYEW-----------DGPSGVYHYGV-VGVPHTVWFVENVIA 163

Query: 177 HYD--LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
             D  L  +G ++      F  G N++       ++L +RT+ERGV   T ACGS + A+
Sbjct: 164 IADDQLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAA 223

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
            + +G L   +  V++   GG L I  H  +     V++ G +    EG L
Sbjct: 224 AIIAGILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274


>gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 121/291 (41%), Gaps = 34/291 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---------ITSDAINALSTDDNTHFDQIMLIHDFQ 56
           +DFAK++G GN  ++ID R              +    +           D ++LI + +
Sbjct: 1   MDFAKLQGSGNDFILIDNRDGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIEEPE 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG- 114
           D + D   +  N DGSE + CGNG RC VRF     +     +FET+ G++ A+    G 
Sbjct: 61  DNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRAEVLEGGK 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V +  P                  +                 ++ G PH +  V+ D
Sbjct: 121 RVKVQLTPPS-----------------EPLEKTLRVEGTDLEGVFINTGVPHFVVPVK-D 162

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232
           +   D+   G  +  H  F  +G N++     + +++ +RT+ERGV   T ACG+ A A 
Sbjct: 163 IDKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGATAG 222

Query: 233 VVASGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
            + +      +R  V V       L +++ +N   VF+ G   K +EG L 
Sbjct: 223 AIVAYLKGLVSRKPVQVITKSEEVLGVDFDENFREVFLNGAVYKVFEGTLS 273


>gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 261

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/267 (32%), Positives = 135/267 (50%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +VI+    +  +TS  I  LS       FDQ++L+        D   RI N +G+EV+ C
Sbjct: 1   MVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC   FL  +    +K  +  T +  L  +   +  I V+M EP   +  +    S
Sbjct: 61  GNGARCFGLFLLLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEPDFKFYNL---SS 117

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
              +  + F I  +N   + N  +VS+GNPH I  V+  + +  +   GN + K+P+F E
Sbjct: 118 LQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQS-IKNAPVNIIGNNIEKNPIFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
           GVN+S   + + + + LR +ER VG T ACGSAACA+V         +  V V++LGG L
Sbjct: 175 GVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKL 234

Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +I W      ++M G AK  ++G + I
Sbjct: 235 IIIWKGFGTPLYMVGPAKHVYDGYIYI 261


>gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
 gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
          Length = 286

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 132/295 (44%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--------NALSTDDNTHFDQIMLI 52
           M ++ + F K+EG+ N  LV+D+R     +  + +                   D ++LI
Sbjct: 5   MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKEN 111
              Q A   A + ++N DGS  + CGNG+RCV   L  R   +S F  +T  G       
Sbjct: 65  GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRPCAVT 124

Query: 112 RD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           R        + V+MG      + I    + +  D  R  +             V +GNPH
Sbjct: 125 RAPGSASARVRVEMGT-----RRITGEHTLELEDAPRTFV------------AVDVGNPH 167

Query: 167 AIFFVEDDLYHYDLAS-FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           AI FV+       LA   G  +  HP+F     N+  AR  +  S+ L  WERGVG+TAA
Sbjct: 168 AIAFVDASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAA 227

Query: 225 CGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           CG+ ACA++ A+         +AV +++ GG L IE  +   + MTG A+  + G
Sbjct: 228 CGTGACATLAAAIHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRG 282


>gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
          Length = 281

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 33/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  +++D R      T+ A     A+     +   D ++LI + ++A  D
Sbjct: 5   ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESKEA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
              +  N DGS  + CGNG RC  RF   R +      F T+ GI+ A+     ++ + M
Sbjct: 63  FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEAEITG-TNVGLTM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P             + +  D     P          +V+ G PHA+  V DD+    +
Sbjct: 122 TPP-------------ENLQLDLRLDDPAGGEQT--VHLVNTGVPHAVLLV-DDIDVVPV 165

Query: 181 ASFGNLLAKHPMF-SEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             +G     HP F   G N++       + + L +RT+ERGV   T ACG+ A A+ + +
Sbjct: 166 KEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAALVA 225

Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKL 279
            CL  T     V   G   L+I +H        V + G A   +EG+L
Sbjct: 226 SCLDLTAAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273


>gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 267

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 121/284 (42%), Gaps = 25/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R        D    L         D I+   +   A  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGRNIKIEDIQDLAKKLCDRHFGVGADGILFCEESSQA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL-----VAKENRDGSIS 117
              N DGS  + CGNG+RC+ RF+     + +   + ET  G+      V +      + 
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHISQVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+ I +           +  ++   I   +  F R    V++G PH    V++ +  
Sbjct: 119 VEMGKAIWE----------KEFQKEILEIEGRSFDFYR----VTVGVPHIAILVDEFMKD 164

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L  +G+LL KH  F    N++  +V + + + ++TWERG G T  C +   +  V   
Sbjct: 165 EELNYWGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQ 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L K    V     GG + ++   ++ V + G+A   + G +D+
Sbjct: 225 RLQKIKGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267


>gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
 gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
          Length = 285

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117
           + D  +  +N DGS    CGNG RC+ RF      +     F+T  G+  A         
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                P  +   + L        R    +       +R       G  H +  V DDL  
Sbjct: 117 ---TAPENNPSGVRLFVPDITEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVV-DDLDA 172

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
             +  +G  L + P +   G N++   +   + L LRT+E+GV   T +CG+   A+   
Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 260

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 115/280 (41%), Gaps = 27/280 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + FAK    GN  LVID     DN +  +       +    D +  I    +A ++A  R
Sbjct: 4   IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILPTSEADIEA--R 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMG 121
           +IN DGSE +  GNG RCV   ++           T  G+   +              MG
Sbjct: 62  LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P +  +L    R  +                      +S GNPH + FVE+    + + 
Sbjct: 122 KPEIAGELTVKTRHHETTGIQ-----------------LSTGNPHFVIFVEEFEEGWQV- 163

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
              + +A+ P F  G N+   +V    SLD+R +ERGVG T + G+ +CAS VA+    K
Sbjct: 164 -LADSVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGK 222

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V V   GG   +EW     + +TG A     G+  I
Sbjct: 223 CESPVRVATPGGAQTVEWS--GEITLTGPATIVCTGEFFI 260


>gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 270

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 27/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + +D      +N    AI           D ++LI     A  D  +
Sbjct: 1   MKFIKMQAAGNDYVYVDCFKEKIENPGEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-ENRDGS---ISV 118
            + N DGS    CGNG RCV ++      +K K+FT ET  GI   + E +DG    I+V
Sbjct: 59  DMYNADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGIKYIEIEEKDGVAHYINV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLY 176
           +MG+  +  +             ++  I      F+     V +GNPHA+++VE  D+L 
Sbjct: 119 NMGKAFITSEF-----------PEKISINGEEKEFIG----VDVGNPHAVYYVETLDELK 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +L + G    +H  F + VN     V   +++ +R WERG G T ACG+ ACA+  A+
Sbjct: 164 GMNLEAVGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAAAFAT 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                    V V +LGG L I    N+ ++M G A+  + G+++ ++
Sbjct: 224 MKKGLCENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269


>gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
 gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
          Length = 266

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 33/289 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             ++F+K+ G GN  ++ID R    ++T   INAL T       D ++L+        D 
Sbjct: 1   MQINFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVEPSLH--CDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118
            ++  N DG     CGNG RC V F   +     + + F+FE       A+     ++ +
Sbjct: 59  TMKYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRL 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            M    LD +        +                      V+ G+PH + F  DD+   
Sbjct: 119 HM----LDARDFRYHMEIEGF----------------ACTFVNTGSPHVVIF-ADDINAI 157

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           ++A  G  + ++   F EG N++   +TS  S+ LRT+ERGV   T ACG+ A A+ + S
Sbjct: 158 NVAEKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIIS 217

Query: 237 GCLHK-TNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
             L K    +V V +  G  L + + +N  ++ +TG AK  ++G + I 
Sbjct: 218 RKLGKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266


>gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
 gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
          Length = 273

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 35/289 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTDDNTHFDQIMLIHDFQDASV 60
           + + F KM+G GN  ++ID R    +    A       +       D ++ +     A+V
Sbjct: 2   NRIPFWKMQGSGNDFVLIDHRRSFISDGERAGFARKVCAPKFGVGADGLIFLE--SSATV 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D   R  N DGSE + CGNG RC  RF     +  +   FET+ G++ A+   D  + ++
Sbjct: 60  DFRWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHAEVL-DRRVKLE 118

Query: 120 MGEP--ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +  P  +     IPL+                          ++ G PH +  +  DL  
Sbjct: 119 LSPPHGLRLGLEIPLSAK------------------TWTGHFINTGVPHVVLPLA-DLEA 159

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
             +   G  +  H +F   G N++  R +    L +RT+ERGV   T ACG+ + A+ + 
Sbjct: 160 APVTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAALI 219

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
           +  L      V V    G  L I +         VF+ G A   ++G+L
Sbjct: 220 ASRLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268


>gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
 gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
          Length = 350

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 130/292 (44%), Gaps = 20/292 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
            V F KM G+GN  ++++  GCH   +SD    A      +     DQ ++   ++  S 
Sbjct: 4   KVPFVKMHGLGNDFVIVN--GCHMPKSSDIHSFAKEISDRELGVGCDQFII---YRQDSD 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + I N DGS  ++CGN  RC+ R L      K+   +    ++  K     +I VDM
Sbjct: 59  KINMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  +   +P +     +  +R+ I P   +       V + NPH + F    L   D+
Sbjct: 119 GPPSFESSWMPDSTDLCSL-AERYMIEPKEMI------CVDVANPHLVIF--SKLSKKDM 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              GN   K  +F +GVN++ AR+     ++L  WERG G T ACGS A A+  A+  L 
Sbjct: 170 GMIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLS 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
                  +    G L ++   N+ V M+G A   + G+L  +  K   +  D
Sbjct: 229 FFGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGELLKRAAKLSNEKAD 279


>gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8]
 gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8]
          Length = 285

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117
           + D  +  +N DGS    CGNG RC+ RF      +     F+T  G+  A         
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                P  +   + L        R    +       +R       G  H +  V DDL  
Sbjct: 117 ---TVPEDNPSGVRLFVPDVTEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVV-DDLDA 172

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
             +  +G  L + P +   G N++   +   + L LRT+E+GV   T +CG+   A+   
Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4]
 gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4]
          Length = 273

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 32/287 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +++D R     + S  I+ L         D ++++ +  D   +  +  
Sbjct: 5   FTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRMVY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGE 122
            N DGS    CGNG RC  RFL     +        F T  G +    + +         
Sbjct: 63  FNADGSRASFCGNGARCFARFLFEMENKDGEQGEVCFMTEAGRITGWISGEAV------- 115

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYDLA 181
                  I L    +   R    I   ++        +  G PH + F + ++L    L 
Sbjct: 116 ------KITLPTPKNLTLRIPLEIEGKSYEL----HKIDTGVPHVVLFEDCENLPRSTLE 165

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G+ +  H  F  EG N++ A       + +RT+ERGV G T ACGS   AS + S  +
Sbjct: 166 EIGSRIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTASALISHLV 225

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              +  + V +  G  L + +  +       F+ G AKK + G ++I
Sbjct: 226 LDMDCPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272


>gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
 gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580]
 gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
          Length = 285

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 142/287 (49%), Gaps = 19/287 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++    H     ++  A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++      ++  SF  ET+ G++ A+   D     S +
Sbjct: 63  MRIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSAT 122

Query: 118 VDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           VDMGEP L    +P+      +   ++   G            VSMGNPH I F  DD+ 
Sbjct: 123 VDMGEPRLLKSDMPMRGEQGSETINEKMIFGGREMK----GTAVSMGNPH-IVFYLDDIE 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G L+ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+ V+S
Sbjct: 178 KAPLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSS 237

Query: 237 GCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 K +  ++V + GG L+I W ++  V MTG A+   EG+  I
Sbjct: 238 VLNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFI 284


>gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803]
 gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803]
          Length = 262

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 38/287 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVD 61
             + F K +G GN  ++ID R    +     +             D ++L+ + +D   D
Sbjct: 1   MKLKFYKYQGTGNDFVMIDNRDKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     + + S  F  I G+  A    D  +S+ M
Sbjct: 61  FKMVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKASIEGD-VVSLKM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                + + I     F                       +  G+PH I F E+ +   D+
Sbjct: 120 ----QNVESISENEDF---------------------IFLDTGSPHHILFTEN-VNKVDI 153

Query: 181 ASFGNLLAKHPMFS--EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
              G+ +     +    G N++     + ++  +RT+ERGV   T +CG+   A  +A+ 
Sbjct: 154 KKEGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAF 213

Query: 238 CLHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
              KTN   V +   GG L + + +       V+++G A+  ++G++
Sbjct: 214 KSSKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260


>gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 283

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 32/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  ++ID R           + A        +   D ++LI + ++A  D
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSEEA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              +  N DGS    CGNG RC  RF      + R+   F T  G++ A+ +   ++ + 
Sbjct: 63  FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISG-TAVLLT 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  P                 R   H+       L     V  G PHA+ F  D++    
Sbjct: 122 MTPPGQC--------------RLNLHLAGPTGEEL-TLHTVDTGVPHAVLFC-DEIATVP 165

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +G+    HP F   G N++     +   L +RT+ERGV   T ACG+ A A+ + + 
Sbjct: 166 VKEWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVAS 225

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
            L +     +V   G   L+I   D +     V + G A   ++G L
Sbjct: 226 RLGRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272


>gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
          Length = 283

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R      T     A    +       D +  + D  +  +D 
Sbjct: 8   VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG----SIS 117
                N DGS  + CGN  RC  +   +         F T  G + AK   DG     + 
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGPDAGRVK 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +  P      I L      +D     +                G PHA   + DD+  
Sbjct: 128 VQLTPPKGLETNISL-----DVDNTPMTV-----------HFADTGVPHA-VVLVDDVAA 170

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            ++   G  L  HP F   G N++ A+V    ++ LRT+ERGV   T ACG+ ACA+ + 
Sbjct: 171 VNVRELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLV 230

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  L  T+    +   GG +L  + +NN +F+ G A+  ++G+L +
Sbjct: 231 ANALGLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGELYL 276


>gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG']
          Length = 290

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 17/284 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V  M      +T + I  +         D I+L+    +      +R
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118
           I N DGSE +  GNG+R   +FL        + F  ET+ G++ A+      NR   + V
Sbjct: 61  IFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+  +D + + LA        +   + P   +       +S+GNPH +FF  ++L   
Sbjct: 121 DMGKATVDPRSVGLANPDKPFVEELLELAPDLRI---KGTAISVGNPHFVFF-REELDEK 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+   S  
Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           L K    V V+M GG L I+      + M G   +   G     
Sbjct: 237 LGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSGDFSPD 280


>gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
 gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
          Length = 1411

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 82/316 (25%), Positives = 136/316 (43%), Gaps = 40/316 (12%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDAS 59
            +   + F KM+  GN  +VI+         +     L          D ++LI + + A 
Sbjct: 1100 EKQKITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA- 1158

Query: 60   VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------------KSFTFETIRGIL 106
             DA +R  N DG+E +  GN +RCV ++L     +             +  T ET  G+ 
Sbjct: 1159 -DAKMRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVK 1217

Query: 107  VAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------- 155
                     +  S++VDMG+P+   + IP +     +    F+    N +  +       
Sbjct: 1218 TLVLYKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAP 1277

Query: 156  --------NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
                        +++GNPH + F    +    +   G L   H +F E  N    RV   
Sbjct: 1278 LIVAGNEYRVTCINVGNPHCVVF-SKFVDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGP 1336

Query: 208  ESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHV 265
              L +RTWERG G T ACG+ ACA+ VAS        N+ ++VK+ GG L++++     V
Sbjct: 1337 NELKMRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYT-GETV 1395

Query: 266  FMTGEAKKEWEGKLDI 281
             +TG  K  ++G+++I
Sbjct: 1396 LLTGNTKMCYQGEVEI 1411


>gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 268

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 23/273 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K    GN  LV        + +  AI+ +         D I++     +      +
Sbjct: 1   MQFVKYHAAGNDYLVYHD-KTPFDCSMLAISVICDRHRGLGSDGILI--PVIEPGKMLSV 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           +I+N DGSE +  GNG+R + R+L  +  +  + F   T  G +  +   DG  IS+ MG
Sbjct: 58  QILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVRCQVLDDGRRISIAMG 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                       R   ++D  R H+            +VSMGNPH + FV+         
Sbjct: 118 MATFPENE----RHSMEVDGMRLHLN-----------LVSMGNPHCVVFVDQTTEAL-AR 161

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  + +  +F    N+    V    +L ++ WERGVG T + G+++CA+   S  L  
Sbjct: 162 KLGPTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLGF 221

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            +  V+V M GG + IE  ++NHV M G   K 
Sbjct: 222 VDDHVTVHMPGGQITIELDEDNHVLMKGPVCKI 254


>gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 282

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 13/281 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++S +   K +G+GN  LV+D       +    I  L         D ++      + +
Sbjct: 1   MENS-ITMIKYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGVLY--GPVEIN 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGS 115
               + I N DGSE    GNG+R   ++L     +K + F+ ET+ G +  +   +R   
Sbjct: 58  GKMGVHIYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATE 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+MG+     + IP+     ++  + F     ++        +++GNPH I F+ D++
Sbjct: 118 FRVNMGKASFISREIPVTGEVREVINETFTFNKKDYKAT----CLTVGNPHCIIFM-DEV 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                   G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA
Sbjct: 173 SPEIAKDLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVA 232

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +  L  T   ++V   GG + I+  D++ ++MTG      +
Sbjct: 233 AYRLGLTESRINVNQPGGIIQIDIKDDDTIYMTGSVGYVAD 273


>gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum]
          Length = 290

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 17/284 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V  M      +T + I  +         D I+L+    +      +R
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKE-----NRDGSISV 118
           I N DGSE +  GNG+R   +FL       +  F  +T+ G++ A+      NR   + V
Sbjct: 61  IFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRLFRIQTLGGMVTAEVYPDASNRVDRVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+  +D   + LA     +  +   + P   L       +S+GNPH +FF  ++L   
Sbjct: 121 DMGKATVDPVSVGLANREKPLVEELLELAPDLRL---KGTAISVGNPHFVFF-REELDEK 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+   S  
Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           L K    V V+M GG L IE      + M G   +   G     
Sbjct: 237 LGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSGDFSPD 280


>gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 268

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 25/274 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K    GN  LV   R C   + +   I+ +         D I++            
Sbjct: 1   MQFYKYHAAGNDYLVY--RDCVPFDCSKPMISRICDRHRGLGSDGILV--PVIKEGERLS 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDM 120
           +RI N DGS+ +  GNG+R + R+L  +  +    F   T  GI+  +   +G  IS+ M
Sbjct: 57  VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVTCQVLDNGQRISIAM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+          A     +D     + P           VSMGNPH + FV+        
Sbjct: 117 GQAAFAN----TAAFTVDVDGTPLQLHP-----------VSMGNPHCVVFVDQPTETL-A 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+ +  +F +  N+   RV   ++L+++ WERGVG T + G+++CA+   S  L 
Sbjct: 161 RQLGPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLG 220

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
                V+V M GG ++IE  D+ HV M G   + 
Sbjct: 221 LVGPRVAVNMAGGVIMIELDDDYHVLMQGPVCRV 254


>gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
 gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
          Length = 250

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 38/281 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K +G GN  ++ID R        D             D ++LI   ++   D  +R
Sbjct: 1   MKFYKYQGTGNDFVMIDNRSNTFQ--GDVAALCHRRFGIGADGLILIE--KEEGYDFRMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG+E   CGNG RC V+F +         +F  + G   A+   D  +S+ M    
Sbjct: 57  YFNADGAEGSMCGNGGRCAVQFASDLGIFEGKTSFIAVDGPHEAEIT-DKKVSLKM---- 111

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                                + P+    +   + ++ G+PH I F E+ +   D+++ G
Sbjct: 112 -------------------IDVHPLEE--VPEGYFLNTGSPHLIIFTEN-VDAIDVSTEG 149

Query: 185 NLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             +  +  +    GVN++  +V S  S+ +RT+ERGV   T +CG+   A+ + S  +  
Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209

Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279
            +  V V+ LGG L +++   +    V +TG A+K +EG+L
Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250


>gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
 gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
          Length = 285

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 12/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K   +GN  LV+D +   +   T D I     +     D I+          D  +
Sbjct: 1   MKFSKYHALGNDYLVLDPKDAPELPGTDDTIRICHRNFGLGSDGILY-GPIPTERADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSISVDMG 121
           RIIN DGSE +  GNG+R   R+L    ++  + FT +T+ GI+  +      SI VDMG
Sbjct: 60  RIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSIKVDMG 119

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +     + IP+      D+       I   N+      ++  +GNPH +  +  ++    
Sbjct: 120 QVRFGHEHIPVDGPEQSDQNLGHELEINGTNYTT----YIADIGNPHCVVPLP-EISEEL 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G ++  HP F    N+   +     ++ +  WERG G T A GS++ A+   +  +
Sbjct: 175 ACKDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAVAHRI 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              +  ++V M GG + IE  D+  + MTG A +      D +   +
Sbjct: 235 GLCDETITVHMPGGKIGIEIGDDYAIRMTGPATRVAIMHFDPEALDF 281


>gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
          Length = 267

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 25/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R     +I + A            D I+   +   A  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGREIEIKDINALAKKLCDRHFGVGADGILFCQESDTA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----SIS 117
              N DGS  + CGNG+RC+ RF+     + ++    ET  G+               + 
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHISQVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+   +               +   I   +  F R    V++G PH    V++ +  
Sbjct: 119 VEMGKAEWE----------KGFQEETLEIEGRSFDFYR----VTVGVPHIAILVDEFMKD 164

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L  +G +L KHP F    N++  +V + + + ++TWERG G T  C +   +  V   
Sbjct: 165 EELNYWGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQ 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L K    V     GG + ++   ++ V + G+A   + G +D+
Sbjct: 225 RLQKIKGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267


>gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
 gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
          Length = 270

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 114/286 (39%), Gaps = 28/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  ++I+       ++ + +  L         D ++L++   D    A +
Sbjct: 3   IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLCNRRFGIGADGLILLNPPADEFAQATM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DG  V  CGNG RC   F            TF+T  G + A + +DG  ++ M  
Sbjct: 63  VYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKA-DAQDGEFTIRMTP 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                           M   R                ++ G  H I F  DD+   D+ S
Sbjct: 122 ----------------MHDLRLDQTLSTPHGSFEYHFMNTGVEHVIVF-RDDVDQVDIKS 164

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G+ +  H  F  +G N + A +     + +RT+ERGV   T ACG+   A  +A+    
Sbjct: 165 EGSSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAALKG 224

Query: 241 KTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                VS+ + GG  L I +  +     ++ +TG AK  + G  ++
Sbjct: 225 MAKAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270


>gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
          Length = 281

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 112/284 (39%), Gaps = 26/284 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F K+ G GN  + ID R      + ++S A            D I        A  D 
Sbjct: 10  IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGS-ISVDM 120
                N DGS  + CGN  RC+        +     T  T  G++      +    +V M
Sbjct: 70  MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLISITVGDELQDATVTM 129

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +P                     ++        +    V+ G PH + F  D+L  YD+
Sbjct: 130 TDPT----------------NILLNVSLEVEKETQQVHFVNTGVPHLVVF-HDNLIDYDI 172

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G LL  H  F  EGVN++  ++ S  S+ +RT+ERGV   T ACG+  CASV+ +  
Sbjct: 173 IPKGKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIANQ 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           L      V V       +IE + +N  V M G     + G+L +
Sbjct: 233 LGLVGTNVKVMTAS-KEIIELNLNNGKVLMKGPVVHVYTGQLQL 275


>gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
 gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
          Length = 361

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 67/351 (19%)

Query: 5   MVDFAKMEGIGNKILVID----MRGCHDNITS------DAINALSTDD--NTHFDQIMLI 52
            V F+KM G GN  +  +     R    + +         I+ +  D       DQ+++ 
Sbjct: 11  RVKFSKMHGAGNDFVCFETNKVERINSFDKSEISLKELKDISLILADRKYGVGCDQLIIC 70

Query: 53  HDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----------KRKSFT-- 98
           ++    + S    + +IN DG +   CGNG+RC  +F+              K+   T  
Sbjct: 71  NNNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKKDETTSE 130

Query: 99  ----FETIRGILV--------AKENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRD 142
                ET+ G+++                + V+MG  ++     WK        +K   D
Sbjct: 131 IEQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLNNKQSID 190

Query: 143 RFHIGPVNHLFLRNP-----FVVSMGNPHAIFFVEDDLY-------------HYDLASFG 184
           +        L L N       +VSMGNPH I F++ ++                 +    
Sbjct: 191 KSAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTMKIEDIA 250

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVVASGCLH 240
             L KHP+F++  N+     ++   L      R +ERG G T ACG+ A A  VAS  + 
Sbjct: 251 VALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAVASILMG 310

Query: 241 KTNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
             +    V+  M GG LLI+W   N +VF TG A   +  ++DI+  + I+
Sbjct: 311 HCDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIEINRQIE 361


>gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 258

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 121/285 (42%), Gaps = 39/285 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F+K +G GN  ++ID R  +     T               D +ML+ +   A  D
Sbjct: 1   MTIPFSKYQGTGNDFVIIDNRTQYFPKDDTKLISKLCDRKFGIGADGLMLLENHPSA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F  +  +   + TFE I G+  A    D  + + M
Sbjct: 59  FRMVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGLHEASIEGD-IVQLKM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                        +   K+ ++  +              +  G+PH I  V DD+   ++
Sbjct: 118 -------------QDVSKIKKEPTY------------TFLDTGSPHHIAMV-DDVEKVNV 151

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  L    ++ E G N++  +        +RT+ERGV   T +CG+   A  +A+  
Sbjct: 152 KAEGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHT 211

Query: 239 LHK-TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
               T+  V++ + GG L +++   N    ++++ G A   ++G+
Sbjct: 212 NGLTTSNKVALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGE 256


>gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
 gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
          Length = 270

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 122/285 (42%), Gaps = 33/285 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R      +++ I AL T       D ++LI     A  D  +
Sbjct: 3   IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIEASLSA--DFTM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
           +  N DG     CGNG RC   F  +      K   + FE       A       + + M
Sbjct: 61  KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKEQVKLQM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P                 ++   +  +   FL      + G+PH + +V DD+   ++
Sbjct: 121 NPP--------------HDFKENLQVEGLLCYFL------NTGSPHVVTYV-DDVNIINV 159

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G+ +     +F+ G N++  + TS   L +RT+ERGV   T ACG+ A AS + S  
Sbjct: 160 YEKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASALISHM 219

Query: 239 LHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           L KTN   ++V +  G  L I +     +++++G AK  + G  +
Sbjct: 220 LGKTNSTSLNVTVRSGDTLQISFTSAMENIYLSGPAKIIFSGTFE 264


>gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
 gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
          Length = 264

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 31/288 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M +S + F+KM G GN  +V D      ++++D I +L T       D ++LI     A 
Sbjct: 1   MNTS-IKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIEPS--AR 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISV 118
            D  ++  N DG     CGNG RC V F  +      +  FE       A    + +I +
Sbjct: 58  FDFAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFEANGNRYDAWVCDNEAIRL 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            M  P                 RD F    ++  F      V+ G+PH I F  D+L  +
Sbjct: 118 KMILP--------------HDFRDEFGSNGLSCNF------VNTGSPHTIIFT-DELDTF 156

Query: 179 DLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+ S G L+     +F EG N++  +VTS ESL +RT+ERGV   T ACG+ A A+ + S
Sbjct: 157 DVESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMS 216

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
             L K            G  L I++ ++   V+++G A   + G + +
Sbjct: 217 YKLGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSIQM 264


>gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245]
 gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245]
          Length = 272

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 33/291 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F K+ G GN  +VID R    ++++  I A+ T       D ++LI   +    D 
Sbjct: 1   MQIHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISV 118
            +   N DG     CGNG RC V F  +       +  ++FE       A      ++ +
Sbjct: 59  SMNYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRL 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYH 177
            M    LD +    A + +                  N   V+ G+PHA+ ++E   L  
Sbjct: 119 HM----LDPEDFRNAVAVEGF----------------NCHYVNTGSPHAVIYIESRKLEA 158

Query: 178 YDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D++  G  +  +  +F  G N++   +T+ +S+ +RT+ERGV   T ACG+ A A+ + 
Sbjct: 159 LDVSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALM 218

Query: 236 SGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
           S  L K  +  V VK+  G  L + + ++   V +TG AK  + G  +++ 
Sbjct: 219 SFRLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQN 269


>gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 304

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 40/306 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           +  + F K  G  N  +++        ++  A+  +         D ++ +         
Sbjct: 4   APRLAFLKGHGTENDFVIVPDPDGRLELSPAAVARICDRRAGVGGDGLIRVVRSSAHPEA 63

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     ++       T  G+      
Sbjct: 64  RGMADDAEWFMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIA 123

Query: 112 RD---------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +D         G+++V MG+  L           +        +    H +      V M
Sbjct: 124 KDDLGGTDAPGGAVTVQMGKATL----------PEPGADGPVTVAVGEHSWPARH--VDM 171

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPHA+ FV DDL           +     +  G N+          + +R  ERG G T
Sbjct: 172 GNPHAVAFV-DDLDQAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGET 230

Query: 223 AACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            +CG+ ACA +VA+      + A        +V + GG L+I    +  V MTG A    
Sbjct: 231 RSCGTGACAVMVATARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVA 290

Query: 276 EGKLDI 281
           EG+LD 
Sbjct: 291 EGELDP 296


>gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 295

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 111/296 (37%), Gaps = 40/296 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------A 58
           F K  G  N  +++       ++++  + AL         D ++ +              
Sbjct: 15  FLKGHGTQNDFVIVPDPDGRIDLSAADVAALCDRRAGIGADGVLRVVRSAAEPAAAGMAG 74

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD--- 113
             + F+   N DGS  + CGNG+R   R+L              T  G+   +   D   
Sbjct: 75  QAEWFMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELAVATRGGVKRVRIAADAPD 134

Query: 114 ---GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              G ++VDMG                  D     +   +   L     V+MGNPHA+ F
Sbjct: 135 GTPGDVTVDMGRAAF-----------PGPDGVTVTVDGRSWPALN----VNMGNPHAVAF 179

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           VED  +   L       A    + +GVN+          + +R  ERG G T +CG+ AC
Sbjct: 180 VEDLAHAGHLYE-APATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGAC 238

Query: 231 ASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A  VA+      + A        +V + GG L+IE   +  + MTG A    EG L
Sbjct: 239 AVAVAAIRRDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294


>gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
 gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
          Length = 281

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 132/288 (45%), Gaps = 30/288 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M++F K++G GN  +VID R       +++  A +      +   D ++++   +  +  
Sbjct: 1   MLEFTKIQGNGNDFIVIDNREGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN-- 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC+ R+    ++  +  +FET+ G +         + +DM
Sbjct: 59  FTMRLFNNDGSEGEMCGNGARCIARYAWEKKIAGEKMSFETLAGPIHGVVTAPF-VELDM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHY 178
           GE  L                    +      F+     + +G PH + FV++  D  H 
Sbjct: 118 GETNLS----------QGFWGQSLKVEGETFPFVY----LVVGVPHCVLFVDNLEDFSHD 163

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            L   G  +      F +G N++  + +   +L + T+ERGV  LT +CG+ + AS +A+
Sbjct: 164 SLRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGSTASAIAA 223

Query: 237 GCLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279
             + +    + V+  GG   + + +++   +   ++TG+     EG+L
Sbjct: 224 SIVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271


>gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
 gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
          Length = 260

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 38/288 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             V+F K +G GN  ++ID R                        D ++L+ +  D+  D
Sbjct: 1   MQVEFYKYQGTGNDFVMIDNRSNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSETD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG++   CGNG RC+V F     +     TF    G+  A    D  +S+ M
Sbjct: 59  FRMVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                                    I         +   ++ G+PH +  V DDL HY++
Sbjct: 119 -------------------------IDVDEVQKNDSYTFLNTGSPHHVQIV-DDLEHYNV 152

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +    ++ E G N++  +     +  LRT+ERGV   T ACG+ A A  +A   
Sbjct: 153 KENGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMNA 212

Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           + +T++  +++ + GG L++ +        +VF+TG AK  ++G ++I
Sbjct: 213 IGQTDKTSINLNVEGGKLVVSFDKLGDHFTNVFLTGPAKFVFKGIIEI 260


>gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
 gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
          Length = 256

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 124/284 (43%), Gaps = 38/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +   K +G GN  ++ID R        T+              D ++L+ +  D S D  
Sbjct: 1   MKLYKYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLILLEN--DQSTDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F     + +   TF  I G+  A  N +  IS+ M  
Sbjct: 59  MVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGLHHATINENDIISLQM-- 116

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                           ++    H          N   ++ G+PH + F  D+L ++D+ +
Sbjct: 117 --------------KNVEEVNIHD---------NYVFLNTGSPHHVQF-ADNLSNFDVKN 152

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +    ++ + G N++    TS     +RT+ERGV   T +CG+ A A+ +A     
Sbjct: 153 EGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETLSCGTGATATAIAMKATG 212

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           KTN   +++ + GG L + ++  N    ++F+ G A+  +E  +
Sbjct: 213 KTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFETTI 256


>gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
 gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
          Length = 269

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           S ++F KM G+GN  ++++ R      N++  A N          DQ ++  +  +    
Sbjct: 3   SKINFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNNF--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T       L+ +   +  ISV++G
Sbjct: 60  YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   S DK+    +       + L+    V +GNPH + F    L   D  
Sbjct: 120 AVSFNETWMP---SRDKI----WAFAARYMIDLKETICVDVGNPHLVIF--SKLESQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F+ GVN++ A +     ++L  WERGVGLT ACGS AC S  A      
Sbjct: 171 IVGETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLKRGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +   +V    G L ++  +N ++ M G A    EG  
Sbjct: 230 IHSPSTVVFKHGSLNMK-EENGNIIMQGSATLIAEGVY 266


>gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
 gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
          Length = 259

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  +++D R     ++ + I ++         D ++L+ + +    D  +
Sbjct: 3   IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RCVVRF         +  F  + G   A    +  I + M   
Sbjct: 61  VYFNADGGEGSMCGNGGRCVVRFANDLGLFDGNTKFIAVDGEHEATVTGE-VIRLKM--- 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 +     +++ D                   ++ G+PH + +V DD++  D+ + 
Sbjct: 117 ----SNVNGVEQYEEYD------------------FMNTGSPHYVTYV-DDIHEADVVNI 153

Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G+ +    ++    G N++   V     L +RT+ERGV   T +CG+   A  +++    
Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281
                V+V+ +GG L +E+ +        +++ G A + +EG L++
Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259


>gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
 gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
          Length = 299

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 122/291 (41%), Gaps = 31/291 (10%)

Query: 10  KMEGIGNKILVI-DMRGC-HDNITSDAINALSTD-DNTHFDQIM-LIHDFQ----DASVD 61
           K  G  N  +++ D  G  H ++    +  L         D ++ +I   +    +   +
Sbjct: 17  KGHGTENDFVLLPDPDGSVHGDLDPALVRFLCDRYAGIGADGVLRVIEGSRQTYVEDGGE 76

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
            F+   N DGS  Q CGNG+R  VR+L        K     T  G+     N DG+I+ D
Sbjct: 77  WFMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLNDDGTITAD 136

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +GEP        L      +     H  P  H        V MGNPHA+ FV+D      
Sbjct: 137 LGEPA-------LPGPAGIVVEADGHQWPATH--------VDMGNPHAVVFVDDLREPGP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L       +    F  GVN+         ++ +R  ERG G T +CG+  CA  VAS   
Sbjct: 182 L-VDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCAVTVASARA 240

Query: 240 HKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD---IKTGK 285
            +  R V+  V +LGG + + W  +NHV +TG A     G+ D   + +G+
Sbjct: 241 ARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFDRAWLPSGR 291


>gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771]
          Length = 227

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/216 (51%), Positives = 146/216 (67%), Gaps = 5/216 (2%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           +CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW  IPLA  
Sbjct: 1   ACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEE 60

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA FG LL  HPMF E
Sbjct: 61  FHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPE 120

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM----L 251
             N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T R V + +     
Sbjct: 121 RANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKP 180

Query: 252 GGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
            G L IEW + ++HV MTG A+ EW G+LD  TG W
Sbjct: 181 PGTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLW 216


>gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1]
          Length = 273

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQPLRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESGEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R +ERG G T +CG+   A   
Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1]
 gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1]
 gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2]
 gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2]
 gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1]
 gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2]
 gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1]
 gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2]
 gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1]
 gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1]
 gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1]
 gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1]
 gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3]
 gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2]
 gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1]
 gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1]
 gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1]
 gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2]
 gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1]
 gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2]
 gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3]
 gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2]
 gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2]
 gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3]
 gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1]
 gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1]
 gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2]
 gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3]
 gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2]
 gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2]
 gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1]
 gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1]
 gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1]
 gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1]
 gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266]
          Length = 273

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESDEV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R +ERG G T +CG+   A   
Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 284

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 12/281 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           + ++ +  +K +G+GN  L++D +     +    I  L         D ++      +  
Sbjct: 2   VMANTIIMSKYQGLGNDYLILDPKKNQVQLQGKKIALLCQRGFGLGADGVLY--GPVEID 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK--ENRDGS 115
               +RI N DGSE    GNG+R   ++L     +  K F  ET+ G +  +   +R   
Sbjct: 60  GKLGVRIFNADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATE 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++G+P      IP++    ++ ++ F      +        +++GNPH I F  D++
Sbjct: 120 FKVNIGKPSFISSDIPVSGEVREVIKENFVFHGKEYKAT----CLTVGNPHCIIFT-DNV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + + G  +     F E +NL I R     +L++  WERG G T A G+ +CA+  A
Sbjct: 175 SAEAVKNLGPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +  L      ++V   GG + I+  ++  ++MTG      +
Sbjct: 235 AYKLGLVESRINVNQPGGMIQIDMEEDETIYMTGTVGYIAD 275


>gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1]
          Length = 273

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R +ERG G T +CG+   A   
Sbjct: 161 TVCDINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
 gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
          Length = 260

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 37/287 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVD 61
           S + F K +G GN  ++ID R    +     +  L  D       D ++L+ +    + D
Sbjct: 2   SHIHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENH--PTAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG E   CGNG RC+VRF     +  +  TFE I G+  AK     +IS+ M
Sbjct: 60  FKMVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAKVIDATAISLQM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                            +M  +  ++              + G+PH +   E+ L   D+
Sbjct: 120 -------------SDVTEMRIENSYV------------YTNTGSPHHVQLTEN-LADLDV 153

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
              G  L  +     G N++  ++T  E+  +RT+ERGV   T +CG+   A  +A    
Sbjct: 154 YQEGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIAMHKT 213

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           + TN   V ++  GG L + +  +     ++++ G A   ++G   I
Sbjct: 214 NHTNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260


>gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
 gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
          Length = 269

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 37/288 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALSTDD-NTHFDQIMLIHDFQ 56
             + FAK++G GN  ++I+      +         +A+  + +       D ++L+ D  
Sbjct: 1   MKLKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDST 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115
            A  D   R  N DGS  + CGNGMRC  RF+            ET+ G++ A       
Sbjct: 61  VA--DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGVVEAFVYGP-I 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V + +P                 R+      V+ L       ++ G PHA+ FVE   
Sbjct: 118 VKVGLTKP-----------------RELALNLKVDGL---TVHFINTGVPHAVIFVER-A 156

Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              ++   G  +  HP+F   G N++   V  L+ + +RT+ERGV   T ACG+ + AS 
Sbjct: 157 DAVNVKEIGRKVRFHPLFAPAGTNVNFVEVR-LDRIVVRTYERGVEDETLACGTGSVASA 215

Query: 234 VASGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
           + +  + K +  V V++  G  L + +    + V++ G  K  ++G L
Sbjct: 216 LIAAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDGLL 263


>gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism
           HF4000_APKG3D20]
          Length = 280

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 8/281 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  LV+D R   +++   +I  +         D  +L   F     D  +
Sbjct: 1   MNFDKYHALGNDYLVLDPRERFESLDERSIIRICDRNFGLGSDG-ILHGPFSSEKADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVDMG 121
           RI+N DGSE +  GNG+R   R+L    ++  + FT ET+ GI+  + + D   I V+MG
Sbjct: 60  RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +      +IP+    +  +     I    +      +  ++GNPH +  + D++    + 
Sbjct: 120 QVSFRSDVIPVKVEGEAREVLNEPIEAAGNSL--KYYAATIGNPHCVIPM-DEVSESFVR 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HPMF    N+ + ++    +L +  WERG G T A GS++ A+   +  +  
Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  ++V M GG + +   D  +V M G A +     LD +
Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLDPE 277


>gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
 gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
          Length = 259

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 123/284 (43%), Gaps = 38/284 (13%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  +V+D R    + T   I     +       D ++LI +      D  +
Sbjct: 5   EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLCNRKFGVGSDGLILIENHD--EYDFEM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS+   CGNG RC V+F     + +   TF +  G+  A    D  + + M + 
Sbjct: 63  IFFNPDGSQS-MCGNGSRCAVKFAQFLGIIKGETTFLSTDGVHEATIEGD-IVRLSMHD- 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                 +           F ++ G+PH + F   ++ + D+   
Sbjct: 120 ----------------------VAQSEINTFPEHFTINTGSPHYVIF-ASNIKNKDVKEE 156

Query: 184 GNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
           G  +  +  F+ EG+N++     S   + +RT+ERGV   T +CG+   A  +A+     
Sbjct: 157 GASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIANVLHGG 216

Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
               V ++ LGG L++E+  +     +V++TG AK  ++G++++
Sbjct: 217 V-SPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259


>gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
          Length = 288

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 122/281 (43%), Gaps = 13/281 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F K  G+GN  LV   R   + ++++ I  L         D +++        ++ 
Sbjct: 2   TPLHFHKYHGLGNDYLVC-HRDVAEQLSNEHIQMLCHRHYGVGSDGLLI---DSGDQINP 57

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVD 119
            +RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +    + D   ISVD
Sbjct: 58  TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG    +   +P   +  +       +         +  +VSMGNPH +  V D L    
Sbjct: 118 MGRANFNPAALPALVNLPEAVNYPLPLADE----TLSVVLVSMGNPHCVVLV-DKLDLAQ 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  +  H +F +  N+    V    +L +  WERG G T A GS++CA+  A   L
Sbjct: 173 VHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            K +  V V M GG L I +  +  V M G   K     LD
Sbjct: 233 GKVDDRVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 289

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 124/307 (40%), Gaps = 38/307 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  +++       ++   A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  REMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG ++V MG+  L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDVTVGMGKAFLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D  +  DL +     +    + +GVN+      +   + +R  ERG G T +CG+ ACA
Sbjct: 166 DDLAHAGDLLA-PPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I    +  + MTG A    EG++D    
Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID---A 281

Query: 285 KWIKKNE 291
           +W++   
Sbjct: 282 EWLENAA 288


>gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
 gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
          Length = 289

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 27/283 (9%)

Query: 8   FAKMEGIGNKILVID--MRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+ G GN  +VI+   R  +     + I            D ++ I   Q+A  D   
Sbjct: 13  FTKISGTGNDFIVINDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QNAPTDIQW 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG RC  R++ S+  +   SF   T  G++  + +    I V + +
Sbjct: 71  HFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRLIGVQLTK 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P                 R ++ I  +   +L     ++ G PHA+  V  D+  +DL +
Sbjct: 131 P--------------HDHRSKYTIKTIKTEYLL--SSINTGVPHAVLQVS-DIESFDLMN 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH- 240
               +  H M++ G N++I    + +++ +RT+ERGV G T +CG+ + A+ + +     
Sbjct: 174 MAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAIVACLDDS 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
           + +  V V   GG L I +    N V MTG+A   + G +   
Sbjct: 234 EVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTITPD 276


>gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
 gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
          Length = 289

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 124/307 (40%), Gaps = 38/307 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  +++       +++  A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENAIDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +     T  T  G+     +
Sbjct: 62  RELAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVHID 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG ++V MG   L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDVTVGMGGARLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D     DL S     +    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 DDLAQAGDLLS-PPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + A+       +V + GG L+I    +  + MTG A    EG++D    
Sbjct: 225 VAVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID---A 281

Query: 285 KWIKKNE 291
           KW++   
Sbjct: 282 KWLETAA 288


>gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 289

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 121/306 (39%), Gaps = 38/306 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       ++   A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGLLHVVRSAAHPEA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  RHMAADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           ++G I+V MG  +L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KEGDITVGMGGALLPEGDVTVSVGGRS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D  +  DL       +    + +GVN+          + LR  ERG G T +CG+ ACA
Sbjct: 166 DDLAHAGDLLG-PPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      +  V       +V + GG L+I    +  + MTG A    EG+++    
Sbjct: 225 VAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE---A 281

Query: 285 KWIKKN 290
           +W++  
Sbjct: 282 EWLESA 287


>gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
 gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
          Length = 278

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 32/298 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + + F KM G GN  ++ D R      D++   A    +   +   D ++L+ +      
Sbjct: 2   TGLQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVENSD--QC 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           D   +  N DGSE + CGN  RCV RF   +++  +  TFET+ G++ A+   + ++   
Sbjct: 60  DFKWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEVLGE-TVKAG 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +P                D   F+   V+     N   ++ G PH +  V  ++   D
Sbjct: 119 LTDPT---------------DVKYFYALDVDG-TTCNVTSMNTGVPHVVLLV-GNIEKPD 161

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  H  F   G N++         L +RT+ERGV G T ACG+ A A+ +A  
Sbjct: 162 VEELGRKIRYHEAFAPAGTNVNFVEFR-RGELAVRTYERGVEGETLACGTGAVAAALARV 220

Query: 238 CLHKTNRAVSVKML-GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
                   V V    GG L + +        ++F+ G+A   + G++     K  +K 
Sbjct: 221 AADAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQKK 278


>gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
 gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
          Length = 327

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 25/296 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNT--HFDQIMLIHDFQDASV 60
           ++  K  G GN   +ID      N T +    L+    D +T    D I+ +   + A  
Sbjct: 3   IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115
           DA +R+ N DGSE   CGNG+RCV R++   +  K    ET++  L  K+  D      +
Sbjct: 61  DARMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++     D K +PL    D +  ++         F      +++ NPH +  VE + 
Sbjct: 121 YLVEISPVSFDLKDLPLVLDKDTIINEKVSGISEELAFT----ALAVPNPHFVSIVEKEQ 176

Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              DL    +     P   F +GVN+S  +      + +RT+ERGVG T ACG+A  AS 
Sbjct: 177 ITSDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSAST 236

Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEW--EGKLDIK 282
           + +      K    V V   GG +    H+ N    + + G A   +  E +++++
Sbjct: 237 LVTCMNGLNKIEEPVEVYNNGGKVRCVVHEKNGRQSIDLIGNASYVYRCEAEINME 292


>gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
 gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
          Length = 324

 Score =  235 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 26/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDF 55
           M+ S++   K  G GN  ++ID     D  T +   +LS            D ++ I + 
Sbjct: 1   MKLSII---KCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNS 57

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-- 113
           +    DA +R+ N DG+E + CGNG+RCV R+   ++ +K    ET++  L  ++  D  
Sbjct: 58  EH--CDARMRMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTEDLY 115

Query: 114 ---GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
               +  V +    LD   +PL                 N  F      +S+ NPH +  
Sbjct: 116 PDMKTYEVAIEPVSLDPVSLPLKTVHAPHIDRPIPALSDNLSFT----ALSVPNPHVVTK 171

Query: 171 VEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           V +D+ H D  S G L      +F  GVN+S  +  +   + ++T+ERGVGLT ACG+A 
Sbjct: 172 V-NDVPHRDAESIGRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAM 230

Query: 230 CASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD 280
            AS + S      +    ++V   GG +    H  + V+   + G A  E+   L+
Sbjct: 231 SASSLVSVLNAGNDLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLE 286


>gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
 gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
          Length = 260

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 128/283 (45%), Gaps = 33/283 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K  G+GN  ++       D    + +       +   D ++++   +  + + ++ 
Sbjct: 1   MEFEKYSGLGNDFII----TEKDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI----LVAKENRDGSISV 118
             N DGS    CGNG+RC   +L +     K      +T+ GI    ++  E  +  +SV
Sbjct: 54  FYNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSV 113

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DM   I   ++    ++ + +DR   +I                G  H + FV+ +  + 
Sbjct: 114 DMNAAINTTEI----KTIEAIDRTFKYI------------YTFTGTDHVVIFVDKEELNE 157

Query: 179 D-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           D +  +G  +     +F +G N++   V + E +D+ T+ERG GLT ACG+ A A    S
Sbjct: 158 DFVTKYGKNIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVS 217

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L KT   V V +LGG L IE   +  +FM G ++  ++G +
Sbjct: 218 NMLGKTGNKVKVNLLGGSLEIEI-KDGTIFMNGISEMIYKGSV 259


>gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 259

 Score =  234 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 101/261 (38%), Positives = 142/261 (54%), Gaps = 17/261 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN  ++ID R     I +   N     +    DQI++I +   ++ D F+ I N D
Sbjct: 9   MYGTGNNFVIIDSRS----INNLNWNYREIANQNGCDQIIVITNS--SAADCFMHIYNAD 62

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129
           G EV+ CGN  RCV   + S    +  T E   + IL   +    SI V+MG+P+  W  
Sbjct: 63  GGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWHE 122

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D +        P+    L++P  V++GNPH +FFV D++    L S G  L K
Sbjct: 123 IPLSAKCDPLHL------PIELEMLKDPVAVNIGNPHMVFFV-DNISEIPLQSLGPKLEK 175

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248
           H +F + VN++IA+V     + LR WERG G+TA+CGSAACA+++AS        R  SV
Sbjct: 176 HTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSV 235

Query: 249 KMLGGGLLIEWHDNNHVFMTG 269
            + GG LLIEW DN  +FMTG
Sbjct: 236 NLPGGKLLIEWPDN--IFMTG 254


>gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
 gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
          Length = 279

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 115/282 (40%), Gaps = 14/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           MV   K  G+GN  L+ D     + +    I  L         D I+        +    
Sbjct: 1   MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGIL--SGPVLENEKIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK--ENRDGSISVD 119
           +RI N DGSE +  GNG+R   ++L     +K K +   T  G +  +  +     + VD
Sbjct: 59  VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG        I        M  +             N   VSMGNP+ +  +E ++    
Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFF----CDNFYNITCVSMGNPNCVVMME-EISKNK 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G  +     F   +N+ +  V   E++ +  +ERG G T A G+ ACA+  A+  L
Sbjct: 174 ALHLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHKL 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 V V M GG LL+E+ +++ VFMTG     + G + +
Sbjct: 234 GLVGNRVQVHMQGGDLLVEFAEDDRVFMTGPV--VYIGSITL 273


>gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
 gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
          Length = 276

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 34/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V+F KM G GN  +VID R       ++           ++   D ++ + D +    D 
Sbjct: 4   VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSEK--YDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DG EV+ CGNG RCV RF   + +     TFET+ G + A+  +   + V + 
Sbjct: 62  GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISAEV-KGRMVKVLLP 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   + L           F  G ++  F      V+ G PH +  V  DL  + + 
Sbjct: 121 APRNEATDVDL----------PFLAGWLSCDF------VNTGVPHVVVQVS-DLEKHPVF 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  H  F  EG N +   +     L +RT+ERGV G T ACG+ A AS + +   
Sbjct: 164 DQGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRR 223

Query: 240 HKTNRAVSVKMLGGGLLI--------EWHDNNHVFMTGEAKKEWEGKLD 280
              +  V+V   GG  LI        +    + +++ G     +   L+
Sbjct: 224 GSVSSPVTVHTQGGEELIIHLSSEGEDVRTGDRIWLQGNTSVIYTATLN 272


>gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
 gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
          Length = 258

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 40/283 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      N T               D ++L+ + +D   D  
Sbjct: 3   IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHEDQ--DFT 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+    CGNG RC+V F     + + S TFE I G+  A   +DG + + M  
Sbjct: 61  MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAYI-KDGLVHLKM-- 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              D   I                         +   +  G+PH + +V +D+ HYD+ S
Sbjct: 118 --QDVSEI---------------------KEYEDHLFLDTGSPHHVQWV-NDIEHYDVKS 153

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  L   P++   G N++    T+     LRT+ERGV   T +CG+ A A  +A     
Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATTEG-FRLRTYERGVEDETLSCGTGATAVALAIHKQG 212

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
           K +  ++ +++ GG L IE+        ++F+ G A+K +EG 
Sbjct: 213 KVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEGV 255


>gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
 gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
          Length = 276

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 24/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI------HDFQDAS 59
           V F K  G GN  L+I       +  + A      DD    D I+ +      H  +   
Sbjct: 3   VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPR--- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
               + ++  DG+    CGNG RC   +        S   +T  G L A    +G I+++
Sbjct: 60  --VIMTLVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRTDEG-ITIE 116

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      +P+ R+ +++  +      V          V+ G PHA+ F  DD+   D
Sbjct: 117 MGTPTFAPDEVPV-RADEQVFEEEIEGLEVTM--------VNTGVPHAVAF-VDDVDDVD 166

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           L +    +     F  G N+++A        D RT+ERGV G T +CG+ A A  V +  
Sbjct: 167 LEAVAPRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAVAIAVVARR 226

Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           L +T+   V V   GG L + ++D  +  + G  + E++G++ +++
Sbjct: 227 LGRTDADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272


>gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
 gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
          Length = 263

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 37/285 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      N T               D ++L+        D  
Sbjct: 3   LQFFKYQGTGNDFVMIDNRNNVVSKNDTKLINRLCDRKFGIGADGLILLEHPDVEGDDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F     +      F  I G   A  ++D  +++ M  
Sbjct: 63  MVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDKDNVVNLQMQN 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                      +     N   +  G+PH I F E D+ + D+  
Sbjct: 123 VS-------------------------DIYQSGNIAFLDTGSPHHIVFTE-DVKNLDVKE 156

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTS-LESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            G  +     + E G N++    T    +  +RT+ERGV   T ACG+   A  +A+   
Sbjct: 157 EGAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGVTAVAIAAHHS 216

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           ++T    V +++ GG L + +  +      V++ G A   ++G++
Sbjct: 217 NRTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261


>gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018]
          Length = 333

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/308 (27%), Positives = 143/308 (46%), Gaps = 24/308 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  ++ID    + N+  +     AI A +       D I+ +        
Sbjct: 14  INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKSDI--C 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115
           DA +RI N DGSE + CGNG+RCV R++   + ++S   ET++     K   D      +
Sbjct: 72  DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + +D+    LD K +PL    +K+  D+         F      VS+ NPH I  V +++
Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDKIPELSDEFDFT----AVSITNPHLIAIV-NNI 186

Query: 176 YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               L   G    +   +  +GVN+S  +V    ++ ++T+ERGVGLT +CG+A  AS +
Sbjct: 187 DSDKLVEIGKKGNSTKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASSI 246

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIK 288
            S    K   + A++V   GG +    H +++    V   G A   +EG +++   K  +
Sbjct: 247 VSCIGEKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRKIEQ 306

Query: 289 KNEDDEAY 296
              D+  +
Sbjct: 307 FTIDESKF 314


>gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
 gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
          Length = 356

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/344 (22%), Positives = 130/344 (37%), Gaps = 68/344 (19%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIMLIHD 54
           + F+KM G GN  +V +                  +    +          FDQ ++I++
Sbjct: 13  IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72

Query: 55  FQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---------------MKRKSF 97
                 S    + +IN DG +   CGNG+RC  +++                        
Sbjct: 73  NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132

Query: 98  TFETIRGI--------LVAKENRDGSISVDMGEPILDWKLIPLARSFD-----KMDRDRF 144
             ET+ G+            +     I V+M   ++          F+     K   ++ 
Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192

Query: 145 HIGPVNHLFLR-----NPFVVSMGNPHAIFFVEDDLYHYDLASFG--------------- 184
           +I  +  L L         +VSMGNPH + F+E ++   +L+S G               
Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252

Query: 185 -NLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              L K P+F +G N+      +      +  R +ERG G T ACG+ AC   VAS  + 
Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312

Query: 241 KT--NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               ++ V+V M GG LLI+W  +   VF TG A   +   + +
Sbjct: 313 YCTQDKEVTVSMPGGDLLIQWSSETGEVFKTGPACTVFNSNIKL 356


>gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 251

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/261 (35%), Positives = 135/261 (51%), Gaps = 17/261 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN  ++ID R  ++         ++   +   DQ+++I     A+   F+ I N D
Sbjct: 1   MHGTGNSFVIIDSRSANN--LDWNYRQIADQGS--CDQVIIITMSNAAN--CFMHIYNAD 54

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129
           GS  + CGN  RCV   +      +  T E     IL   +  D SI V+MG+P+L W  
Sbjct: 55  GSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWNE 114

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D +        P+    L+ P  V++GNPH +FFV D++    L + G  L  
Sbjct: 115 IPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFV-DNISEIPLQNLGPKLEN 167

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248
           H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS        +  SV
Sbjct: 168 HELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCLATKQTSV 227

Query: 249 KMLGGGLLIEWHDNNHVFMTG 269
            + GG LLIEW  N  + MTG
Sbjct: 228 HLPGGHLLIEWSKN--ILMTG 246


>gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
 gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
          Length = 317

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 13/277 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  LV         ++++ I  L         D +++       +++  +RI
Sbjct: 33  FHKYHGLGNDYLVCHH-SVAARLSNEQIRILCHPHYGIGSDGLLI---DSGDNINPTLRI 88

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123
           IN DGSE +  GNG+R   R+L    R+    F   T  G +  + + D   + VDMG  
Sbjct: 89  INPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVDMGRA 148

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P      +       +         +  +VSMGNPH +  V   L    +   
Sbjct: 149 NFNPAALPALIDLPEALNYPLALAEE----TLSVSLVSMGNPHCVVPVTR-LDLAQVHRL 203

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  HP+F +  N+ +  V   ++L +  WERG G T A GS++CA+      L++ +
Sbjct: 204 GPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVMRKLNRVD 263

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VSV+M GG L I +  + HV M G   K     LD
Sbjct: 264 DNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300


>gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15]
 gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15]
          Length = 266

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L   +    D ++ +      +    +   N 
Sbjct: 5   KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++    RM  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I  A+S+  +      IG            + +G  H + FVE+          G 
Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEI-WKKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 262

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 124/283 (43%), Gaps = 30/283 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG------CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
            ++ F KM   GN  +++D            + +S A            D ++L+    +
Sbjct: 1   MLIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLLMP--N 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            S DA + I N DGS  + CG+ +RCV   L  +  +K F  +T  G+     N D +I+
Sbjct: 59  ESCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V++G P +                    +     +      +V +GN H I +V + L  
Sbjct: 119 VNLGMPSM--------------------LKSAYQVMDFTGDLVEIGNQHFIVWV-NSLKD 157

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G+ +  H  F++ VN+  A + +  ++ ++ WE+G G T ACG+ A A+V +  
Sbjct: 158 DPHLQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFSGI 217

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                N  V V M GG + I    N ++ ++GE  + ++G  +
Sbjct: 218 AKGLLNNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYN 259


>gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
 gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
          Length = 257

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 120/286 (41%), Gaps = 39/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +DF K +G GN  ++ID R         A              D ++L+ +  D   D  
Sbjct: 1   MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGADGLILLQN--DPEYDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+VRF            F  + G  +A  + D SIS+ M +
Sbjct: 59  MVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMVS-DESISLKMTD 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                              DR           +    ++ G+PH + FV DDL  +D+ +
Sbjct: 118 V--------------TGIEDR-----------QGLTFLNTGSPHVVRFV-DDLESFDVVA 151

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +     F   G N++ A+V    ++ +RT+ERGV   T +CG+   A  + +    
Sbjct: 152 EGRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTGVTAVALVAHQQL 211

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
                V ++ LGG L + ++       + +++ G AK+ + G + +
Sbjct: 212 GMPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257


>gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
 gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
          Length = 284

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 117/286 (40%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  + +D R    +     D + A+         D ++ +      S  A
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70

Query: 63  FI-RIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDG-SISVD 119
           +I    N DGS  + CGNG RC  R          S  F T  G + A  + D   ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +P    K + +  + +           + H  L   F V+ G PHA+  VE DL   +
Sbjct: 131 LTDP----KDLRMDLTVE-----------IEHQELPLHF-VNTGVPHAVAVVE-DLEAVE 173

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  H  F   G N++   V     L LRT+ERGV   T ACG+ A AS V + 
Sbjct: 174 VWKLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVAR 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T     +   GG  L     +   ++ G A+  + G    ++
Sbjct: 234 KLGLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAFFPQS 279


>gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
          Length = 353

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 47/296 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
            ++ F K +G GN  ++ID R        T               D ++L+ D  D   D
Sbjct: 87  RVIHFYKYQGTGNDFILIDNRLNTFPKEDTKLVAQLCERRFGVGGDGLILLED--DPEHD 144

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +   N DG+    CGNG RC+V F      ++++  TF    G+  A   ++  I + 
Sbjct: 145 FSMIYYNSDGNPSSMCGNGGRCIVAFAQKLGVIQKEETTFSAPDGLHKA-LFKNNLIHLQ 203

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M                    +D  HI  V     +    ++ G+PH +  V++ L   D
Sbjct: 204 M--------------------QDVSHIEKV-----KKGLFLNTGSPHYVEVVKN-LDSMD 237

Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +     F+ EGVN++           +RT+ERGV   T +CG+ A A+ +A  
Sbjct: 238 VKKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGATATAIAMY 297

Query: 238 CLHKTNRA-VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKKEWEGKLDI 281
              KT    + ++  GG L + +            +  +V++ GEA   +EG + +
Sbjct: 298 KGGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEANFVFEGTITV 353


>gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
 gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
          Length = 289

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 38/306 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  +++       ++ + A+ AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTQNDFVIVPDPENALDLPAAAVAALCDRRAGIGGDGLLHVVRSAAHPEA 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     ++       T  G+  A  +
Sbjct: 62  REMAAEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAHLD 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG ++V MG   L    + ++                          V MGNPHA+ FV
Sbjct: 122 KDGDVTVGMGRARLPEGEVTVSVDGR----------------TWPARNVDMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D  +  +L +    +A    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 DDLAHAGELLA-PPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      +  V       +V + GG L+I  +    + MTG A    EG++D    
Sbjct: 225 VAVAAARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEIDE--- 281

Query: 285 KWIKKN 290
           +W++  
Sbjct: 282 EWLRAA 287


>gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
 gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
          Length = 266

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L   +    D ++ +      +    +   N 
Sbjct: 5   KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++    RM  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I  A+S+  +      IG            + +G  H + FVE+          G 
Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENSREEV-WKKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
 gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
          Length = 285

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 10/270 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G+ N  +V D       +T   +  +  D N       ++           +++ N D
Sbjct: 8   YHGLSNDYVVFDPNKNELELTPGNVKMIC-DRNAGLGADGVLEGPVIKEDGMHVKVWNPD 66

Query: 71  GSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPILD 126
           GSE ++ GNG+R   ++L     +++K+F   T  G       N DGS + V MG+    
Sbjct: 67  GSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVSMGKISFW 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+ 
Sbjct: 127 SDEIPVTGEKREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISKNIVCKIGDY 181

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
                 F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L  TN  V
Sbjct: 182 SECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKLGMTNNKV 241

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V M GG L +E  D+  VFMTG+     +
Sbjct: 242 IVHMPGGDLQVEVEDDGTVFMTGDVFYVAK 271


>gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 284

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 24/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQD 57
           + S+M  F KM+G GN  ++ D    +     ++  A            D ++ + + + 
Sbjct: 4   LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116
              D      N DGS  + CGNG RC  R         +   F T  G + A+    G +
Sbjct: 64  QGHDFDWHFFNADGSRAEMCGNGSRCAARLAHRLGLAGREQVFGTDAGAVRAQVKDKGKV 123

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V +                   +     I         N   V+ G PHA+    DD++
Sbjct: 124 RVQLTP---------------AENLQLHSILNFEESSPVNLHSVNTGVPHAVIIC-DDVH 167

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             +++  G ++  HP F   G N++  +V     + LRT+ERGV   T ACG+ A ASVV
Sbjct: 168 KVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASVV 227

Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            +  L     +V V   G   L I+  +   VF+TG+A   ++G L + T
Sbjct: 228 VASALGLCANSVQVVTSGKEHLNIDLQEQG-VFLTGKADFIYQGMLFLDT 276


>gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
 gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
          Length = 288

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVD 61
           V F KM+G GN  + +D R      + +    +           D ++ + H  + A + 
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGADGMIFLDHAPEGAGLA 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRD-GSISVD 119
                 N DGS  + CGNG RC  R      +   S  F T  G + A  + D   ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPIEAAVDPDSNLVTVR 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P      I +    +                      V+ G PHA+ FV D+L   D
Sbjct: 131 LTSPKDLRLNIDMEMEVEGRHHQ------------MTLHSVNTGVPHAVAFV-DNLETVD 177

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  H  F   G N++   VT    L LRT+ERGV   T ACG+ A AS V + 
Sbjct: 178 VWQLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAVIAK 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T    ++   GG  L     +   ++ G A+  + G    ++
Sbjct: 238 ELGLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRGGFYPQS 283


>gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
 gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
          Length = 266

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 76/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L   +    D ++ +      +    +   N 
Sbjct: 5   KYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++    RM  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I  A+S+  +      IG            + +G  H + FVE+          G 
Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEV-WKKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980]
 gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980]
          Length = 266

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 114/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     +   S    +L   +    D ++ +      +    +   N 
Sbjct: 5   KYNGCGNDFILLDYTEDTNY--SQLAASLCAKEKYDTDGLIAV-----KTDPLEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++    RM  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I  A+S+  +      IG            + +G  H + FVE+          G 
Sbjct: 118 SPEKIKAAQSYP-IKNQEIEIGGEKVTIT----SLFLGTIHTVVFVENAREEV-WKKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
 gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
          Length = 259

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 39/283 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  + ID R    N   T    +          D ++L+ +  DA+ D  + 
Sbjct: 5   FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLEN--DATADFKMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG+E   CGNG RC+V F     +     TF  I GI  A  N DG + + M    
Sbjct: 63  YFNADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATIN-DGFVKLKM---- 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                          D D   +        ++   ++ G+PH +  V +++  +D+ + G
Sbjct: 118 --------------QDVDTIKVN-------KDHTFLNTGSPHHVALV-NNIKQFDVKTEG 155

Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +    ++ + G N++        +  +RT+ERGV   T +CG+   A  +A   L K 
Sbjct: 156 AAIRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKA 215

Query: 243 N-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
           N + VS+ + GG L + +        ++++ G A   ++G+++
Sbjct: 216 NTQEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258


>gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
 gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
          Length = 261

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 39/289 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           S + F K +G GN  +++D R    N +T + ++ L         D +ML++  +    D
Sbjct: 2   SAIHFYKYQGTGNDFVIMDNRNGEYNFLTEEQVHFLCDRRFGIGADGLMLLN--KQEGYD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDM 120
             ++  N DG E   CGNG RC+V F           +F  + G   A    D  +++ M
Sbjct: 60  FGMKYYNADGRESSMCGNGGRCLVAFARKMGLTDEKLSFLAVDGPHEATLKGDDWVNLKM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                              D     I  +          ++ G+PH + FV  D+   D+
Sbjct: 120 ------------------QDVSGVEINSL-------HSYLNTGSPHYVKFVA-DVKAVDV 153

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  +  +  F  EG N++  +      + +RT+ERGV   T +CG+   A+ + +  
Sbjct: 154 YNEGKQIRYNDRFAKEGTNVNFVQSLDKG-IFVRTYERGVEDETYSCGTGVTAAALMTAG 212

Query: 239 LHKTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIK 282
                  V V+ LGG L + +        N++++ G A   +EG + + 
Sbjct: 213 AETKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITLP 261


>gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 288

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 121/281 (43%), Gaps = 13/281 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F K  G+GN  LV   R   + ++++ +  L         D +++        ++ 
Sbjct: 2   TPLHFHKYHGLGNDYLVC-HRDVAEQLSNEHVQMLCHRHYGVGSDGLLI---DSGDQINP 57

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD-GSISVD 119
            +RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +    + D   ISVD
Sbjct: 58  TLRIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG    +   +P   +  +       +         +  +VSMGNPH +  V D L    
Sbjct: 118 MGRANFNPAALPALVNLPEAVNYPLPLADE----TLSVVLVSMGNPHCVVLV-DKLDLAQ 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  +  H +F +  N+    V    +L +  WERG G T A GS++CA+  A   L
Sbjct: 173 VHRLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +  V V M GG L I +  +  V M G   K     LD
Sbjct: 233 GMVDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 270

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 127/287 (44%), Gaps = 37/287 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           + F+K++G GN  ++ID R               A+  +         D ++LI + + A
Sbjct: 3   LRFSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSIS 117
             D   +  N DGS  + CGNG RCV RF   + +  +   FET+ GI+ A+ N   ++ 
Sbjct: 63  --DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVN-VSTVK 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V + +P      + L  + + +                +   ++ G PH + FV D +  
Sbjct: 120 VKLTKP----HDLKLNLNVEGV----------------SGHFINTGVPHFVVFV-DRIED 158

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            ++   G  +    +F   G N++      L+ + +RT+ERGV   T ACG+ + AS + 
Sbjct: 159 VNVREVGRKIRFSELFQPSGTNVNFVEAQ-LDKIFVRTYERGVEDETLACGTGSVASALI 217

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           SG + K N  + V       L + +  N N VF+ G     ++G L+
Sbjct: 218 SGKVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264


>gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
 gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
          Length = 257

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 32/280 (11%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID R    N+T + + A+ T       D ++L+      + D  +   N 
Sbjct: 1   MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLE--TSETADFRMNYHNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           DG     CGNG RC V F      R   K + FE       A+   + S+ + M  P   
Sbjct: 59  DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-- 116

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
                         RD    G        N   V  G+PHAI +V ++L   D+ + G  
Sbjct: 117 ------------DFRDGLQAGA------WNCHFVDTGSPHAIAYV-NNLDQLDVLTEGGN 157

Query: 187 LAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           +  +  +F +G N++   +T+ ++L +RT+ERGV   T ACG+   A+ + S  L K   
Sbjct: 158 IRHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTS 217

Query: 245 A-VSVKMLGGG-LLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           + V VK+  G  L++ +++  + +++ G A+  + G + +
Sbjct: 218 SLVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257


>gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
 gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
          Length = 261

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 37/287 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDD-NTHFDQIMLIHDFQDASVD 61
             V+F K +G GN  ++ID R  + +      I  L         D ++ + +      D
Sbjct: 1   MTVEFYKYQGTGNDFVIIDNRRYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGED 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     +  K   F  I G   A    +G +S+ M
Sbjct: 61  FKMVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAIDGQHEASIT-NGVVSLKM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +                           N   L N   ++ G+PH +     D+ + ++
Sbjct: 120 QDVS-------------------------NIETLENALYLNTGSPHYVTLTS-DILNKNI 153

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +  +  F  EG N++     +     +RT+ERGV   T +CG+   A  +A   
Sbjct: 154 KVDGAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHA 213

Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
           L KT+  +V + + GG L + ++ NN    +V++TG A++ ++G++ 
Sbjct: 214 LSKTDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEVS 260


>gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1]
 gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2]
 gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3]
 gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4]
 gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2]
 gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1]
          Length = 273

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 109/293 (37%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   K + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R  ERG G T +CG+   A   
Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++      D     +TG A     GK+D+  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1]
          Length = 273

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   K + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESDKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R  ERG G T +CG+   A   
Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++     +D     +TG A     GK+D+  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273


>gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14]
 gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14]
          Length = 289

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 38/308 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           SS + F K  G  N  +++       +++  A+ AL         D ++ +         
Sbjct: 2   SSRIAFLKGHGTENDFVILPDPDNALDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHPEA 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG R   R+L              T  G+      
Sbjct: 62  RAMAAEAEWFMDYRNGDGSVAEMCGNGTRVFARYLQHAGLAAEGDLAIATRGGVKKIHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG I+V MG+  L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDITVGMGKARLPEGDVAVSVGERS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D     DL S     +    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 DDLADAGDLLS-PPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I    +  + MTG A    EG++     
Sbjct: 225 VAVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI---AA 281

Query: 285 KWIKKNED 292
            W++    
Sbjct: 282 DWLESVAG 289


>gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
 gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
          Length = 270

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 31/286 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
             + FAK EG GN  +++D+R       S  I  L         D +M +     +  D 
Sbjct: 1   MQMRFAKYEGAGNDFILLDLRNGGATPQSAEIARLCDRHFGIGADGLMTLAASAVSGCDC 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMG 121
            +R  N DGS  + CGNG RC   F            F++  GI  A+  R   +   + 
Sbjct: 61  SMRYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKRFDSTDGIHEARMLRIDGLRSTVE 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             ++D + I     +                     + +  G PH + F  DDL   D+ 
Sbjct: 121 LGMIDVERIDRGDGY---------------------WFLDTGVPHYVEFT-DDLEAVDVI 158

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
             G  +     F++G N++  +V     + +RT+ERGV   T ACG+ + A+ + +    
Sbjct: 159 GRGRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTHLAA 218

Query: 241 KTNRAV-SVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLD 280
           + +     + + GG L I + +        + ++GEA+K +EG  D
Sbjct: 219 QPSVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264


>gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1]
 gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1]
 gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1]
 gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2]
 gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4]
 gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1]
 gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3]
 gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1]
 gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1]
 gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1]
 gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1]
 gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2]
 gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1]
 gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1]
 gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2]
 gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3]
 gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2]
 gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1]
 gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2]
          Length = 273

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 108/293 (36%), Gaps = 33/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+L  T RM        T  G+   + +  G 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDGGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDD 174
           +SV MG   ++   +                  + H  +  P   V +GNPHA+   +  
Sbjct: 118 VSVTMGTVRVESGKV-----------------TIEHQDMWWPACKVDVGNPHAVVVTDHT 160

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  +          F +GVN+         ++ +R  ERG G T +CG+   A   
Sbjct: 161 TVCGINLNDSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAA 220

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                       +V++ GG +++      D     +TG A     GK+D+  G
Sbjct: 221 TMATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54]
 gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila
           LSv54]
          Length = 297

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 35/296 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQD 57
           M+   + F KM G GN  + ID R            A +      +   D I+ I     
Sbjct: 4   MEKGALSFTKMSGAGNDFIFIDNREGAVPPAIRAKLAAHICPRMFSVGADGIIFIEKSSI 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSI 116
           A  D      N DGS  + CGNG RC  R+  SR +     +F T+ GI+ A+   D ++
Sbjct: 64  A--DFSWDFYNADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVFADDTV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            + M  P             D        +G  +         ++ G PHA+ +V++   
Sbjct: 122 CLQMTAP------------EDYRSGLSLELGGTS----CQVDFLNTGVPHAVVYVDEVSE 165

Query: 174 --DLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
              + +  +  +G ++  H  F   G N++        SL +RT+ERGV   T ACG+ A
Sbjct: 166 GQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDETMACGTGA 225

Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF-----MTGEAKKEWEGKL 279
            A+ +     +     V++   GG  L I +            ++G A+  ++G+L
Sbjct: 226 VAAALCFSKKYGFASPVNIVSSGGEILSIAFKTGCPPQEAAPSLSGPARIIYQGEL 281


>gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922]
 gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922]
          Length = 260

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 126/285 (44%), Gaps = 38/285 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F K +G GN  +++D R     +    I  +         D ++L+ +      D  +R 
Sbjct: 5   FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGADGLILLQNSN--PYDFRMRY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DG E   CGNG RC+ +F       ++  TFE I G+  A  +              
Sbjct: 63  FNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRAVVH-------------- 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                P   + + +D D+  + P       + + ++ G+PH + FV  D+   D+   G 
Sbjct: 109 -----PTYVALEMIDVDKVEVYP-------SHYFLNTGSPHHVQFVA-DVQKIDVQKEGA 155

Query: 186 LLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +    P F +G N++   V   ++L +RT+ERGV   T ACG+   A+ +A+    K +
Sbjct: 156 KIRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTAAAIAAYSAGKVS 215

Query: 244 R-AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
           +  + VK +GG L +++         V++ G A+  +EG + ++ 
Sbjct: 216 QLPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLEN 260


>gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum]
          Length = 285

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 16/284 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V+ + G    +T   +  L   +     D I+L+           +R
Sbjct: 4   DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLCDRNYGIGSDGILLLGQPTPP---FGLR 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGIL--VAKENRDGSIS---V 118
           I N DGSE +  GNG+R   +FL      K  +F  +T  G +        DG ++   V
Sbjct: 60  IFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVKV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG    +   + +    + M  +   +     +       VS+GNPH +FFVE  +   
Sbjct: 120 DMGRYSFNPSDVGILGRSNPMIEEVLRLEDGTEI---RGSAVSVGNPHFVFFVE-KIDED 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++  + +F + +N  + RV     +++R WERG G T A GS++CA+   +  
Sbjct: 176 FIHEKGRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERGAGYTLASGSSSCAAATIAVH 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           L +    V V M GG L+IE  +N+ + M G  ++   G L   
Sbjct: 236 LGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGHLSPD 279


>gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
 gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
          Length = 262

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 38/289 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
             + F K +G GN  ++ID R        ++ I  L         D ++L+ +      D
Sbjct: 1   MQISFYKYQGTGNDFVMIDNRSEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     +      FE + G   A  +  G +++ M
Sbjct: 59  FKMVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                        +  D +++              N   ++ G+PH +  V D+L   D+
Sbjct: 119 -------------KDVDTVNQQE------------NYTFLNTGSPHHVQLV-DNLVELDI 152

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  +    ++ + G N++       +   +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 KTEGAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQ 212

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
             KT N  + + + GG L +++  +     +VF+ G A   +EGK+D+ 
Sbjct: 213 TGKTSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDLD 261


>gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
 gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 39/289 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  ++ID R       +  I  L         D ++L+ +  D+  D  +
Sbjct: 3   LHFFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RC+V F           TFE + G+  A   +  ++S+ M   
Sbjct: 63  IYFNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSA-IIKGETVSLKM--- 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +D   + L+R                         ++ G+PH + FV DD+  +D+ + 
Sbjct: 119 -IDVPTVNLSRE---------------------ASFMNTGSPHHVAFV-DDVKDFDVFAQ 155

Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G  +   P +    G N++  +V   + + +RT+ERGV   T +CG+   A+ + S   +
Sbjct: 156 GRRIRNLPNYEAIGGTNVNFIQVIDGD-VHVRTYERGVEDETYSCGTGVTAAAITSKMAN 214

Query: 241 KTNR-AVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDIKT 283
           K     V V   GG L +++         ++++ G A   +EG  + KT
Sbjct: 215 KVEDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263


>gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
 gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
          Length = 295

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 41/302 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  ++I       ++  DA+ AL         D ++ +         
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  G+  A   
Sbjct: 62  RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121

Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           +D      G I+V+MG   L    + +                     LR    V MGNP
Sbjct: 122 KDEAPGVPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV D     +L +    +     +  GVN+      +  +L +R  ERG G T +C
Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPHGVNVEFVVDRAPGALVMRVHERGSGETRSC 224

Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA  VA+      +          +V + GG L I    +  V MTG A    EG 
Sbjct: 225 GTGACAVAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284

Query: 279 LD 280
           +D
Sbjct: 285 ID 286


>gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG]
 gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF]
          Length = 295

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 115/302 (38%), Gaps = 41/302 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  ++I       ++  DA+ AL         D ++ +         
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  G+  A   
Sbjct: 62  RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121

Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           ++      G I+V+MG   L    + +                     LR    V MGNP
Sbjct: 122 KEEAPGAPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV D     +L +    +     +  GVN+      +  +L +R  ERG G T +C
Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSC 224

Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA  VA+      +          +V + GG L I    +  V MTG A    EG 
Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284

Query: 279 LD 280
           +D
Sbjct: 285 ID 286


>gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 282

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           +DF K   +GN  LV+      D   +  I  +         D ++ I  F     D  +
Sbjct: 1   MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVL-IGPFSSNVADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N D SE +  GNG+R   R L  +  +K K FT ET  G++ A+ + +G  + V+MG
Sbjct: 60  RIFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++  +  ++  +NH++      V++GNPH +   E         
Sbjct: 120 KVSFLSQDIPVWGEPREVLLENLNVMSLNHIY----SAVTIGNPHCVILAESPTE-IMAK 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            FG L+  HP F    N+   +V     + +  WERG G T A GS++CA+   +  L  
Sbjct: 175 EFGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + ++ V M GG + IE  ++  V M+G       G + 
Sbjct: 235 CDSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSIS 273


>gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
 gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
          Length = 295

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/302 (24%), Positives = 115/302 (38%), Gaps = 41/302 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  ++I       ++  DA+ AL         D ++ +         
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHPEG 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  G+  A   
Sbjct: 62  RAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGVKRAHLA 121

Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           ++      G I+V+MG   L    + +                     LR    V MGNP
Sbjct: 122 KEEAPGFPGEITVEMGVARLPEGEVEVRV----------------GSGLRPATHVDMGNP 165

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV D     +L +    +     +  GVN+      +  +L +R  ERG G T +C
Sbjct: 166 HAVTFVTDLAEAGELRT-APEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSC 224

Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA  VA+      +          +V + GG L I    +  V MTG A    EG 
Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGT 284

Query: 279 LD 280
           +D
Sbjct: 285 ID 286


>gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
 gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
          Length = 298

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 27/295 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F K   +GN  +V++           ++  I  +         D I+          D
Sbjct: 1   MRFYKYHALGNDYIVLNPADFPAWGAAPSTAQIRVVCHRNFGVGSDGILW-GPLPSEKSD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKS------FTFETIRGILVAKENRD 113
             +RI N DGSE +  GNG+R   R+L    R+++ S       T ET  G + ++    
Sbjct: 60  CGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGGHVRSEIRDA 119

Query: 114 GS-ISVDMGEPILDWKLIPLARSF--------DKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           G  I V+MG    +   IP+  +           +  ++  I      F       ++GN
Sbjct: 120 GRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDREFTFC----AATIGN 175

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH +  +  ++       +G  L  HP F    N+   ++    ++ +  WERG G T A
Sbjct: 176 PHCVLPLP-EVSAELAHKYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYTLA 234

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            GS++ A+   +  L   + +V+V M GG + IE  D+  + MTG   K  EG +
Sbjct: 235 SGSSSSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289


>gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
 gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
          Length = 258

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 120/286 (41%), Gaps = 40/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V F K +G GN  ++ID R     I                  D ++L+ + +    D  
Sbjct: 3   VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N +G E   CGNG RC V+F       +  T F  + G   AK   DG + + MG+
Sbjct: 61  MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHETHFIAVDGPHDAKV-EDGLVHLKMGD 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            + + +  G+PH + FV ++L  +D+ +
Sbjct: 120 VQ-------------------------TVENNLDHYFLDTGSPHYVQFV-NNLPQFDVFA 153

Query: 183 FGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +  +  F E G N++       + + +RT+ERGV   T +CG+   A+ + SG L 
Sbjct: 154 EGKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQ 212

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
           + N  +++K LGG L I +         ++++ G A+  +EG + +
Sbjct: 213 QMNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258


>gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1]
 gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1]
          Length = 269

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 39/290 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           ++  ++ F K +G GN  +++D R        +  I  L         D ++L+ +  D 
Sbjct: 8   IEEMILSFYKYQGTGNDFVLVDNRHDIFPKNNTKLIRKLCDRKFGIGADGLILLEN--DE 65

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSIS 117
           + D  +   N DG+E   CGNG RC+V F     + ++  TF  I G   A    D  ++
Sbjct: 66  TYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYASIEAD-VVN 124

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + M       + +    + D+                     +  G+PH + F ++++  
Sbjct: 125 LQM-------QDVTTIENHDE------------------HVFLDTGSPHHVTF-KEEISQ 158

Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           +D+   G  +    P F EG N++  +  S     +RT+ERGV   T +CG+   A  +A
Sbjct: 159 FDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVALA 218

Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
              L +T+   V++++ GG L + +        ++F+ G+A + ++G++ 
Sbjct: 219 MHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEIS 268


>gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
 gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
          Length = 268

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 33/284 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+K+ G GN  +++D R     + + AI AL T       D ++LI   + AS    +
Sbjct: 5   IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETAS--FSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVDM 120
              N DG     CGNG RC V F  S   +      F FE       A  +   ++ + M
Sbjct: 63  LYHNADGLPGTMCGNGGRCAVWFARSIGVQPDAGGCFRFEANGDPYQAWVSGPETVRLRM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            EP      I L   +                       +  G+PHA+   E  L   D+
Sbjct: 123 REPRGIRDEIDLGGQY--------------------CAFIDTGSPHAVIRTEG-LDAVDV 161

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +     +F  G N++   VT+ +S+DLRT+ERGV   T ACG+ A A+ + S  
Sbjct: 162 VGEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSRR 221

Query: 239 LHKTN-RAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
           L  T+  ++ V++  G  L + + ++   V++TG A   + G +
Sbjct: 222 LGMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTGVV 265


>gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO]
 gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
 gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
          Length = 266

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L T +    D ++ +           +   N 
Sbjct: 5   KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDIDGLIAVKIDP-----LEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++  +  M  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I   +++  +      I             + +G  H + FVE+          G 
Sbjct: 118 SPEKIKANQTYP-IKNQEIEINGEKVTIT----SLFLGTIHTVVFVENAREEV-WRKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 268

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 27/283 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVD 61
             + F K  G  N  L    R        +A  I           D  ML+    DA  +
Sbjct: 1   MKIPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAE 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRD----GSI 116
             I++ N DGS  +  GNG RC   FL    M        T  G+   +           
Sbjct: 61  GTIQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQF 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            ++MG   +  K   L  + ++                R+  ++ +GNP     VE   +
Sbjct: 121 EMNMGRAEIAEKRFELQVTGER----------------RDVTLLWVGNPQCAVPVEH--F 162

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +D  + G  + +HP F    N+S  R     ++D+R WERG G T + G+ +  +   +
Sbjct: 163 DFDWRTLGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMA 222

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 +  V V+   G + + +  +  +F+TG A+   EG+ 
Sbjct: 223 VARGLASSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263


>gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
 gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
          Length = 1364

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 13/288 (4%)

Query: 2    QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
            +   V F KM   GN+ + +D  R       S ++       +   D ++++   +    
Sbjct: 1082 RKRPVRFVKMHCGGNEYIYVDAIRQSVAEPASLSVALCGRRRSVGGDGLVIVAPPR-GKA 1140

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-NRDG--- 114
            DA + + + DG+  +  GN +R V ++L  +  +K+K  + ET  G+   +  +RDG   
Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200

Query: 115  SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            S+   +G P  D   +P+  + D       +       F      +S+G+P  +    DD
Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYS--CGGFDDQITCLSLGDPQCVILT-DD 1257

Query: 175  LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +L   G L+ +  +F EG N+S   V    +L +RTWER +G T +CG++ CA+ V
Sbjct: 1258 CDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAAAV 1317

Query: 235  ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +  L   +   +SVK  GG L++       +F+ G    ++EG +++
Sbjct: 1318 VAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIEM 1364


>gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
 gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
          Length = 277

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
             + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + 
Sbjct: 1   MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A         V 
Sbjct: 60  DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177
           +  P +         +FD+   +   +  V+++ L +P     G PHA+       +   
Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              H +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 276

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 124/279 (44%), Gaps = 14/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K   +GN  +VID +     ++   I A+         D  +L    +  S D  +
Sbjct: 1   MKFSKYHALGNDYIVIDPKNLSGELSETDIRAICNRHFGVGSDG-ILCGPNESDSCDFSL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           +I N D SE +  GNG+R   R+L  +  +    FT ET  G++ +   +DG ++SV MG
Sbjct: 60  KIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     +    +    ++ + +      N  F    ++ ++GNPH +  + DD+      
Sbjct: 120 KVRFTHESNLESEPIPEIIKIK------NREFT--YYLANVGNPHCVILL-DDVTPSLAK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G+++     F    N+   +V    S+ +  WERG G T A GS++ A+      L  
Sbjct: 171 EYGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAASVVHALGL 230

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               + V M GG + IE        MTG  +K  EG++ 
Sbjct: 231 CKSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEIS 269


>gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 286

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 117/279 (41%), Gaps = 9/279 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F KM G GN  +V+D+R      + D   AL+        D I+ I   +  +  
Sbjct: 2   SPTLAFTKMHGCGNDFVVLDLRDAPAP-SPDLCRALADRHTGVGCDLILGIRPPRSTTAV 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           A   I   +G     CGNG RCV  +L      +  SF  ++  G    K   D   S+ 
Sbjct: 61  AAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSIG 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P    + IPL        RD ++   +           S GNPHA+  V DD+    
Sbjct: 121 LTVPRFAPEEIPLTGF---AGRDGWYEAVLADGTSVRFAAASTGNPHAVLEV-DDVGGGS 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  +   P     VN+  A V + + + LR  E G G T ACGS ACA+       
Sbjct: 177 VARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIRA 236

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
            +  R V+V++ GG L + W  +   + + G A   +EG
Sbjct: 237 GRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275


>gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
 gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
          Length = 290

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 35/299 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++ +  +  L         D ++ +       
Sbjct: 1   MSTPQIAFLKGHGTENDFVIVPDPDNAIDLPASLVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L              T  G+    
Sbjct: 61  EARAMAEQAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGLAAEGDLAVATRGGVKGVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             +DG+++V MG   L    + +       D                   V+MGNPHA+ 
Sbjct: 121 LAKDGAVTVSMGHARLPKDGVRVTVDGRTWDARN----------------VNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVED  +  DL S     +   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVEDLAHAGDLRSVPP-FSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CA  VA+      +          +V + GG L+I    +  V MTG A    EG +D 
Sbjct: 224 CAVAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVIDP 282


>gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 275

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 28/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ----DASV 60
           ++F K  G  N  +++       ++T++ + AL         D ++ +   +    ++  
Sbjct: 4   IEFLKGHGTQNDFVLLPDAAGRLDLTAERVAALCDRQRGIGADGVLRVVRAKAIGEESVG 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           + F+   N DGS  + CGNG R   R+L      +   F   T  G      + D S++V
Sbjct: 64  EWFMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG   +    + +                       +   V++GNPH +   + D+   
Sbjct: 124 QMGPAAITGTSVTVVAGQP-----------------FSGVAVNVGNPHLVSVTDTDIAGL 166

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL    +    H  F  GVNL    V    +L +R  ERGVG T ACG+   A+V AS  
Sbjct: 167 DLRDQPDF--DHDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASLH 224

Query: 239 L-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           L  K     +V + GG + +         +TG A+    G+LD
Sbjct: 225 LAGKDTGESTVDIPGGRVSVTV-GRGESTLTGPAEIVARGELD 266


>gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 223

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 7/195 (3%)

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147
           L     ++     T  G +V     D  + V+MGEP  +   +P    F     ++ +I 
Sbjct: 35  LKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVP----FRANKAEKTYIM 90

Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
                 +    VVSMGNPH +  V D++    + + G +L  H  F E  N+   +V   
Sbjct: 91  RAAEQTILCG-VVSMGNPHCVIQV-DNVDTAAVETLGPVLESHERFPERANIGFMQVVRR 148

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VF 266
           E + LR +ERG G T ACGS ACA+V            V V++ GG L I W    H ++
Sbjct: 149 EHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLY 208

Query: 267 MTGEAKKEWEGKLDI 281
           MTG A   ++G + +
Sbjct: 209 MTGPAAHIYDGFIHL 223


>gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331]
          Length = 290

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 116/299 (38%), Gaps = 35/299 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-- 57
           M +S + F K  G  N  +++ D     D                  D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALDLPVPVVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L     +        T  GI  A 
Sbjct: 61  DARDMADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGFVADGDLAVATRGGIKRAH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++DG I+V MG  +L    + +       D                   V+MGNPHA+ 
Sbjct: 121 IDKDGDITVSMGRAVLPGSGVTVTVDGRSWDARN----------------VNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVED  +  DL S     +   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVEDLDHAGDLFSVPP-FSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CA  VA+      +          +V + GG L+I  H +  + MTG A    EG +D 
Sbjct: 224 CAVAVAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDP 282


>gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
          Length = 317

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 41/309 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF------ 55
           +  V F K  G GN  ++I     +  + +  +  L+        D ++           
Sbjct: 18  APRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPEG 77

Query: 56  -----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI 105
                +    + F+   N DGS  + CGNG+R  V FL  +        ++ T  T  G+
Sbjct: 78  EALLAEHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGTRAGV 137

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
                   G  ++DMG        +    + D M R      P      R    VSMGNP
Sbjct: 138 KAVTRLEHG-YAIDMGPWCYLDPELAEEAASDSMVRAHGLTDP------RPALSVSMGNP 190

Query: 166 HAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWER 217
           H +  +    DL   DL   G      P    G N+                + +R  ER
Sbjct: 191 HTVVPLASFADLQGLDL---GRAPEVDPAPPHGTNVEFVAAHEPLVREGVGRVRMRVHER 247

Query: 218 GVGLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEA 271
           GVG T +CG+ ACA  VA  +    +   +  V++ GG L ++         HV ++G A
Sbjct: 248 GVGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEHVVLSGPA 307

Query: 272 KKEWEGKLD 280
           +  ++G+L 
Sbjct: 308 ELVFDGELT 316


>gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
 gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
          Length = 295

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 115/313 (36%), Gaps = 44/313 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF------ 55
           S+ + F K  G  N  ++I       ++  D +  L         D ++ +         
Sbjct: 2   STAIGFLKGHGTQNDFVIIPDPENTLDLGPDTVAVLCDRRAGLGGDGLLHVVRSAAHPEG 61

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L     +        T  GI  A   
Sbjct: 62  RAYADDAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELAVATRAGIKRAHLA 121

Query: 112 RD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
            D      G I+V+MG   L    + +                      R    V MGNP
Sbjct: 122 NDEAPGVPGEITVEMGVARLPEGEVEVRV----------------GSGTRPATHVDMGNP 165

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV D     +L      +     + +GVN+      +  +L +R  ERG G T +C
Sbjct: 166 HAVTFVTDLAEAGELRE-APEVLPASAYPQGVNVEFVVERAPGALAMRVHERGSGETRSC 224

Query: 226 GSAACASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA  VA+      +          +V + GG L I    +  V MTG A    EG 
Sbjct: 225 GTGACAVAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGT 284

Query: 279 LDIKTGKWIKKNE 291
           +D   G W+  + 
Sbjct: 285 ID---GDWLAASA 294


>gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 277

 Score =  228 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 27/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  +++D R        ++ S  + A +       D ++LI + Q+  + 
Sbjct: 4   LHFWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEGDL- 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC  R L           F T  G + A+   +  + ++M
Sbjct: 63  FRMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGE-RVRLEM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178
           GE  L+         FD+   DR         FL       +G PHA+ + +   D+   
Sbjct: 122 GEIDLEEAW------FDEPLEDRDLPPGTRWSFLH------VGVPHAVLWADSWQDVSEG 169

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
            L   G     HP   +G N++ A      +L +RT+ERGV   T +CG+ +CA  V + 
Sbjct: 170 TLRWIGKKYRHHPRCPQGANVNFAAPE-EGALRVRTYERGVEDFTDSCGTGSCACGVVAV 228

Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNNHVF-MTGEAKKEWEGKLD 280
                   V V+  GG   +      +  V  + G A    EG  +
Sbjct: 229 LRGG-PSPVEVRTPGGIQQVGCRIRGDKAVLSLAGAAVFVAEGVWE 273


>gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
 gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 119/286 (41%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61
           V F KM+G GN  + +D R    +     D +  +         D ++   H  + + + 
Sbjct: 11  VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRD-GSISVD 119
                 N DGS  + CGNG RC  R      +      F T  G + A+ + D   ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P    K + +A   + ++   FH+             V+ G PHA+  V D L   D
Sbjct: 131 LTPP----KDLRMAIDIE-VEGRPFHL-----------HFVNTGVPHAVA-VMDHLELVD 173

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  + +H  F   G N++        +L LRT+ERGV   T ACG+ A AS + + 
Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T     +   GG +L     +   ++ G A+  ++G+   ++
Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEFYPQS 279


>gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
 gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
          Length = 264

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 126/292 (43%), Gaps = 40/292 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62
           M+ F K +G GN  ++ID R       ++ + A           D ++L+ +  D   D 
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEN--DPQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RCVV F       +  T F  I G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRESTMCGNGGRCVVAFAKRLGIIEHETLFIAIDGEHRATIEGDSYVRLQM- 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                       ++  +++  + ++             ++ G+PH + +VE ++   D+ 
Sbjct: 118 ------------KNVTEVEEHKGYV------------FLNTGSPHHVQWVE-EVDTVDVK 152

Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           S G  +    +++   G N++       +   +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 SEGATIRYGELYATQGGSNVNFVS-KGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211

Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKTGK 285
           + +T+ + +++   GG L + +        +++++G A+  +EG ++   GK
Sbjct: 212 IGETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFEGTIEELKGK 263


>gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
 gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
          Length = 258

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 119/286 (41%), Gaps = 40/286 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62
           M++F K +G GN  ++ID R       ++ + A           D ++L+ +  D+  D 
Sbjct: 1   MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLEN--DSQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +   N DG +   CGNG RCVV F     +  +   F  I G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETLFIAIDGEHRATIEGDNYVHLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                 +  P                        +   ++ G+PH + +V DD+   D+ 
Sbjct: 119 NVT-SVEEHP------------------------DYVFLNTGSPHHVQWV-DDVETVDVK 152

Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
             G ++    ++++  G N++           +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 PEGAVIRYGTLYADKGGSNVNFVS-KGENGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211

Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279
             +T  + +++   GG L + +     +  +++++G A+  +EG +
Sbjct: 212 TKQTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEGVI 257


>gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074]
          Length = 296

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/311 (23%), Positives = 120/311 (38%), Gaps = 46/311 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           S+ + F K  G  N  +++       +++   + AL         D ++ +         
Sbjct: 2   STRIAFLKGHGTENDFVIVPDPDNALDLSPRTVAALCDRRAGIGADGVLHVVRSAAHPEA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
                  + F+   N DGS  + CGNG+R   R+L              T  G+  A   
Sbjct: 62  RHLADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDLPIATRGGVKHAHLA 121

Query: 112 RD--------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           +D        G ++V MG   L    + +A +                        V+MG
Sbjct: 122 KDEPGAEPGTGPVTVAMGRAALPGGDVTVATAHGTAPA----------------LHVNMG 165

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+ FV D     +L S    +     + +GVN+          + +R  ERG G T 
Sbjct: 166 NPHAVAFVADLADAGELLS-APAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETR 224

Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +CG+ ACA  VA+      + AV       +V + GG L+I  + +  V MTG A    E
Sbjct: 225 SCGTGACAVAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAE 284

Query: 277 GKLDIKTGKWI 287
           G++D    +W+
Sbjct: 285 GEID---AEWL 292


>gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
 gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
          Length = 278

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 16/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64
           + F K  G GN  ++++   C  + +  A       D    D ++ +  + +       +
Sbjct: 3   LSFEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRVIM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            ++  DGS  + CGNG RC   +   R        +T+ G   AK + DG  +++MG P 
Sbjct: 63  TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIH-DGGATIEMGAPE 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+A     ++           +   +   V+ G PHA+ FV DD+   +L    
Sbjct: 122 FGPNDVPVAGDEPLIE---------TRVGDYDVTAVNTGVPHAVAFV-DDVTAVNLERDA 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +    +F EG N++ A        D RT+ERGV G T +CG+ A A   A+  L  T+
Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230

Query: 244 RA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
              VSV   GG L +   D+ +  +TG  ++E+ G L +   
Sbjct: 231 GENVSVSPPGGDLEVTV-DDRNATLTGPVEREFGGDLRVSNA 271


>gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
 gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
          Length = 264

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 40/292 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62
           M+ F K +G GN  ++ID R       ++ + A           D ++L+ D  D   D 
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLED--DPQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RCVV F       +  T F  + G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRESTMCGNGGRCVVAFAKQLGIIEHETLFIAVDGEHRATIEGDSYVRLQM- 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                       ++  +++  + ++             ++ G+PH + +VE ++   D+ 
Sbjct: 118 ------------KNVTEVEEHKGYV------------FLNTGSPHHVQWVE-EVDAVDVK 152

Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           S G  +    +++   G N++       +   +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 SEGATIRYGELYATQGGSNVNFVS-KGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYH 211

Query: 239 LHKTN-RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKTGK 285
           + +T+ + +++   GG L + +        +++++G A+  ++G ++   GK
Sbjct: 212 IGETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFDGTIEELKGK 263


>gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
 gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
          Length = 266

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L T +    D ++ +           +   N 
Sbjct: 5   KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++  +  M  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I   +++  +      I             + +G  H + FVE+          G 
Sbjct: 118 SPEKIKANQTYP-IKNQEIEINGEKVTIT----SLFLGTIHTVVFVENAREEV-WRKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039]
 gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039]
          Length = 266

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L T +    D ++ +           +   N 
Sbjct: 5   KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++  +  M  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I   +++  +      I             + +G  H + FVE+          G 
Sbjct: 118 SPEKIKANQTYP-IKNQEIEING----DKVTITSLFLGTIHTVVFVENAREEV-WRKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 267

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 41/293 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVD 61
             +DF K +G GN  +++D R          +             D I+LI +  D S D
Sbjct: 1   MKMDFFKYQGTGNDFIILDNRKKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
            +++  N DG E   CGNG RC + F       K     F  I G         G IS+ 
Sbjct: 59  FYMKYYNSDGKESTMCGNGGRCAIAFSKKLGIPKENKIYFRAIDGDHCGIIQERGLISL- 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                   K I +  +  K+ +                  ++ G+PH + FV +++   D
Sbjct: 118 --------KFIDIEINMIKISKKYV--------------FLNTGSPHHVLFV-NNIKEID 154

Query: 180 LASFGNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           +   G  +  H  +    GVN++   ++   +L +RT+ERGV   T +CG+   ASV+A+
Sbjct: 155 VCKQGRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLAA 214

Query: 237 GCLHKT----NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
               +      + V +  LGG L + +         +++TG  +  +EG + I
Sbjct: 215 YETGRISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEGWVHI 267


>gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM]
 gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD]
          Length = 253

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 38/283 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F K +G GN  ++++ R  + + + + I  L         D ++L+ +  D   D  
Sbjct: 1   MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPD--TDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     +     TF  I G+  A+ N +  + + M  
Sbjct: 59  MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKCTFNAIDGLHEAEVNGN-VVKLKM-- 115

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +D   I    S                      FV++ G+PH + FV  ++   D+  
Sbjct: 116 --IDVSNISRDAS---------------------DFVLNTGSPHYVRFVS-EVEKLDVYK 151

Query: 183 FGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +     +  EG+N++       E+L +RT+ERGV   T +CG+   AS + S    
Sbjct: 152 EGKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQD 210

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           K   +V++K LGG L +     +    +V++ G A + ++G +
Sbjct: 211 KDKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253


>gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
 gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
          Length = 277

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
             + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + 
Sbjct: 1   MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A         V 
Sbjct: 60  DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177
           +  P +         +FD+   +   +  V+++ L +P     G PHA+       +   
Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              H +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
 gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
          Length = 277

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 24/285 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
             + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + 
Sbjct: 1   MTIPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +R  N DG+E + CGNG RC+ R+   + +  +  T ET+ G + A         V 
Sbjct: 60  DFRMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVI 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177
           +  P +         +FD+   +   +  V+++ L +P     G PHA+       +   
Sbjct: 120 LNPPTV--------TTFDQAYPNPM-VSFVDYVELGDP-----GIPHAVVHYPGLAETEL 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             LA     +    +F +G N++         L +RT+ERGV G T ACG+ + A+    
Sbjct: 166 EQLAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVV 225

Query: 237 GCLH-KTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              H +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 226 TKRHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265]
 gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265]
          Length = 268

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 116/286 (40%), Gaps = 33/286 (11%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           ++ + F+K+ G GN  +VID R    +++   I  +         D ++LI     AS D
Sbjct: 2   TAEIPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIEPS--ASAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSIS 117
             ++  N DG     CGNG R  V F  S      +     FE       A      ++ 
Sbjct: 60  FMMKYHNADGHPGSMCGNGGRAAVWFAHSIGIPFEQEGGCRFEAGGNPYRAWITASETVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + M EP      I                             V  G+PHAIF+    L  
Sbjct: 120 LQMLEPKGFRDNIKTGGGA--------------------CHFVDTGSPHAIFYTTG-LDG 158

Query: 178 YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            D+   G  +     +F  G N++   VT+ +S+ LRT+ERGV   T ACG+ A AS + 
Sbjct: 159 VDVVGRGGEVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALM 218

Query: 236 SGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGK 278
           S  L  T    + V++  G  L + +  +   +F+TG A+  + G 
Sbjct: 219 SHRLGMTPSTTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRGT 264


>gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
 gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
          Length = 334

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 149/321 (46%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57
           M++  K+ G  N   ++D       ++   +   +              D +++++    
Sbjct: 1   MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           ++    +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +  +D + +
Sbjct: 61  SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  FD + ++R     +  ++    F  +++ NPH I FV
Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            + ++    L   G  L + +P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279
            A+ +A       +   N  +SV   GG +  I  ++ N   + + G A      KL   
Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++ G +    I+K  +  AY
Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317


>gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
 gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
          Length = 266

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 20/272 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G GN  +++D     D   S    +L T +    D ++ +           +   N 
Sbjct: 5   KYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEMIYYNK 57

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI--SVDMGEPIL 125
           DGS    CGNG+RC  R++  +  M  + F  ET+ G              SVDMG P  
Sbjct: 58  DGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDMGVPDD 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I   +++  +      I             + +G  H + FVE+          G 
Sbjct: 118 SPEKIKANQTYP-IKNQEIEING----DKVTITSLFLGTIHTVVFVENAREEV-WRKRGE 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-R 244
           L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K +  
Sbjct: 172 LICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISAD 231

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V V +  G L+I     + + M G A  EW 
Sbjct: 232 QVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
 gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
          Length = 300

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 27/301 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F K  G  N  +++       N+ +D +  L+        D ++ +     A+ DA
Sbjct: 5   TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64

Query: 63  ----------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110
                     F+   N DGS  + CGNG R    +L          F   T  GI   + 
Sbjct: 65  VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124

Query: 111 NRDG---SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
              G   +I+ +MG         P     D  D               +   V MGNPH 
Sbjct: 125 EGSGDHATIATNMGAWRFT---DPAKAETDGFDSLVLLRERPLAEDPWSALSVDMGNPHT 181

Query: 168 IFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           +  + +  DL   DL          P+ S G N+   RV     + +R  ERGVG T +C
Sbjct: 182 VVALPESVDLATLDLFHVP---EVRPVPSNGTNVEFVRVVGAGHIAMRVHERGVGETRSC 238

Query: 226 GSAACASVVASGCLHKTNRAV---SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           G+  CA+ +A+             +V + GG L +    N+ V + G A    +G +D+ 
Sbjct: 239 GTGVCAAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVADGTVDLS 298

Query: 283 T 283
            
Sbjct: 299 A 299


>gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
 gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
          Length = 270

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 138/269 (51%), Gaps = 12/269 (4%)

Query: 6   VDF--AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F   KM+G+GN  L+ID R    +++ + I  LS       FDQ++ + +   A  DA
Sbjct: 1   MKFKAFKMDGLGNDFLIIDNRNQKISLSPEQILKLSNRERGIGFDQLIYMENSTQA--DA 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I+  N DG    +CGNG RC+   L     + + TF+    + +  +N D  I+V M +
Sbjct: 59  EIKYFNSDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIMPK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P +    IP+    + +  + F I  +N   L+   ++++GNPH +FF  + +   +L  
Sbjct: 119 PKIKLSEIPVT---NDVQNNPFLI-EINSKKLK-GHLINVGNPHIVFF--EKISDEELKK 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++     F + +N++ A + + +++D+  WERG G T ACG+AACA+   +  L  T
Sbjct: 172 IGPIIENLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLKLT 231

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
              V++    G LLI+ + +  + MTG  
Sbjct: 232 KNPVNIHFQKGHLLIKINSDKTMMMTGPV 260


>gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2]
 gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1]
 gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3]
 gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08]
          Length = 274

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 104/294 (35%), Gaps = 33/294 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQ 56
               F K  G GN  +++D    HD +T + +  L         D  +       + D+ 
Sbjct: 1   MTTKFWKGHGTGNDFVIVD---RHDPLTPEQVRWLCHRRFGIGADGTLQALRARDVEDWN 57

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG 114
                 F+   N DG+  + CGNG+R   R+L     M        T  G+   + + DG
Sbjct: 58  GDPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDG 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVED 173
            ISV MG   ++   +                  + H         V +GNPHA+   + 
Sbjct: 118 DISVTMGTVRIEPDDV-----------------TIEHQDTWWSACKVDVGNPHAVVVTDH 160

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                              F +GVN+         ++ +R  ERG G T +CG+   A  
Sbjct: 161 TTVSGINLDDSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVA 220

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                  +     +V + GG +++      D     +TG A     G++D+  G
Sbjct: 221 ATMAARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274


>gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
 gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
          Length = 1430

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/330 (25%), Positives = 131/330 (39%), Gaps = 57/330 (17%)

Query: 5    MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             +DFAKM+  GN  +V +       N    ++           D ++LI   + A  DA 
Sbjct: 1105 RLDFAKMQSTGNDFIVFNAMEQEIINPEGLSVRLCDRRTGIGADSLVLI--TKSAVADAG 1162

Query: 64   IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---------------SFTFETIRGILVA 108
            +R  N DGSE    GN + CV ++L                        T ET  G+   
Sbjct: 1163 MRFFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRL 1222

Query: 109  ----KENRDGSISVDMGEPILDWKLIPLAR-------------------------SFDKM 139
                +  +  S+ VDMG+P  D   IP                            S + +
Sbjct: 1223 LAYTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENV 1282

Query: 140  DRDRFHIGPVNHLFL------RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +     V H  L          V+++G PH + F    +   D+   G L   +P F
Sbjct: 1283 ASGKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLF-SSFVDKIDVPGVGPLFENNPAF 1341

Query: 194  SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKML 251
               +N    RV    SL +R WERG G T ACG+ ACA+ VA+        +  ++VK+ 
Sbjct: 1342 PRRINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVR 1401

Query: 252  GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            GG L++ +   + V++TG A   + G+++I
Sbjct: 1402 GGDLIVNYT-GDTVYLTGGAALVYTGEIEI 1430


>gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
 gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
          Length = 262

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 38/287 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
             ++ F K  G GN  ++ID R    +   + ++ L         D ++L+   +DA+ D
Sbjct: 6   KHLMTFYKYHGTGNDFVMIDNRNLLFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAAD 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F         + TF  I G+  A+   +G++ + M
Sbjct: 64  FRMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEAEIT-NGTVKLKM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
               +D + I                            V++ G+PH + +V  DL + D+
Sbjct: 123 ----IDVQSIEKDGE---------------------CSVLNTGSPHFVQWVA-DLGNLDV 156

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + GN +     + +EG+N++ A   S   + +RT+ERGV   T +CG+ A A+ +    
Sbjct: 157 RANGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAAALDFLK 216

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
                  V VK+LGG L I    N      +++ G A++ + G++++
Sbjct: 217 NG-NRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262


>gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 268

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 119/296 (40%), Gaps = 47/296 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +++ F K +G GN  ++ID R        T               D ++++ +  D+  D
Sbjct: 2   TVIHFYKYQGAGNDFIMIDNRMNTFPKEDTKLIARLCERRFGVGADGLIILEN--DSKTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +   N DG+    CGNG RC+V F      + +   TF    G+  A    D  I + 
Sbjct: 60  FSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDGLHKAFFKND-LIHLQ 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M     D   I                       ++    ++ G+PH +  V+ DL   D
Sbjct: 119 M----QDVSDI---------------------EKVKKGLFLNTGSPHYVEIVK-DLDSMD 152

Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +     F+ EGVN++     +     +RT+ERGV   T +CG+ A A+ +A  
Sbjct: 153 VKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTGATATAIAMH 212

Query: 238 CLHKTNRA-VSVKMLGGGLLIEWH-----------DNNHVFMTGEAKKEWEGKLDI 281
              KT    + ++  GG L + +            +  +V++ GEA+  +EG + I
Sbjct: 213 KTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEFVFEGTISI 268


>gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
 gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
          Length = 333

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +        S+D       D +++++    
Sbjct: 1   MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +   A +R+IN DGSE   CGNG+R V R+L  +  +  F  +T+   L   +  D    
Sbjct: 61  SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMNANLRVSKQAD---- 116

Query: 118 VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P++       FD +   R     V  L+    F  +++ NPH I F+
Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L   +P F +GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282
            A+ +A       L + N+ + V   GG +    H ++  +   + G A   +  +++I 
Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGGKVQTIVHYDHDCYWIELIGNAT--FTARIEIG 294

Query: 283 TGKWIKKNEDD 293
                + N D+
Sbjct: 295 EDDLRQANFDN 305


>gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
 gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
          Length = 290

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 119/307 (38%), Gaps = 38/307 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------H 53
           S  + F K  G  N  +++       ++    + AL         D ++ +         
Sbjct: 2   SMRIPFLKGHGTENDFVIVPDPENTLDLPPATVAALCDRRAGIGGDGLLHVVRSAAHPEA 61

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L     +        T  G+      
Sbjct: 62  KSMSAEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG I+V MG+ +L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDITVGMGKALLPEGDVTVSVGERS----------------WPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +D  +  DL +            +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 DDLTHAGDLYAPPPFSPPAAY-PDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I    +  + MTG A    EG++D    
Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID---A 281

Query: 285 KWIKKNE 291
            W++   
Sbjct: 282 GWLETAT 288


>gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
 gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
          Length = 258

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 38/287 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
             + F K +G GN  +++D R    D   +  I  L         D ++L+ +  +  +D
Sbjct: 1   MKLTFYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLEN--EDGLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     +   S +F  I G+  A   ++G +S+ M
Sbjct: 59  FKMVYFNSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                + K  P                        N   +  G+PH +  V + L  +++
Sbjct: 118 KNVS-EIKEKP------------------------NAVFLDTGSPHHVQLVAN-LKDFNV 151

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
              G  L       +G N++        +  +RT+ERGV   T +CG+   A+ +A    
Sbjct: 152 KKEGARLRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIAMHKT 211

Query: 240 HKT-NRAVSVKMLGGGLLIEWH-DNN---HVFMTGEAKKEWEGKLDI 281
            KT    + +K LGG L I +  ++    +VF+TG AK  ++G++D+
Sbjct: 212 AKTAGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258


>gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 303

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 116/305 (38%), Gaps = 42/305 (13%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57
           Q+S + F K  G  N  +++        + +  +  L         D ++ +        
Sbjct: 8   QTSPLPFLKGHGTENDFVIVPDPDNALELPASTVARLCDRRAGIGGDGLLRVVRSAAHPE 67

Query: 58  -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L     +     +  T  GI  A  
Sbjct: 68  AEHMAGEAEWFMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHL 127

Query: 111 NRD-------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            +        G I+V MG  +L    + ++                          V+MG
Sbjct: 128 AKAVPGSGVAGDITVSMGRAVLPEDGVTVSVGGRS----------------WPARNVNMG 171

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+ FVE+  +  DL +         ++ +GVN+          + +R  ERG G T 
Sbjct: 172 NPHAVAFVEELDHAGDLLTVPP-FTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETR 230

Query: 224 ACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +CG+ ACA  VA+      + AV       +V + GG L I    +  + MTG A    E
Sbjct: 231 SCGTGACAVAVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAE 290

Query: 277 GKLDI 281
           G +D 
Sbjct: 291 GMIDP 295


>gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
 gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
          Length = 234

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 31/241 (12%)

Query: 2   QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + + + F KMEG+GN  + ++  +   +++   A+           D ++ I   ++   
Sbjct: 18  KGAGMRFTKMEGLGNDYIYLNCLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG-- 75

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG---- 114
           D  + + N DGS    CGNG+RCV +++      ++   T +T  G    + +  G    
Sbjct: 76  DFTMEMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVR 135

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMGEP L     PL    + +                  + V MGNPH + F  + 
Sbjct: 136 EVTVDMGEPKLSP---PLEVQGETV------------------YPVDMGNPHGVIFCPEP 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               DL   G  L + P F    N+    V + + L +R WERG G T ACG+ ACA + 
Sbjct: 175 -EEIDLEVRGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLA 233

Query: 235 A 235
           A
Sbjct: 234 A 234


>gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 270

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 34/291 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +VID  G  +  +            +   D ++++    ++  D  +
Sbjct: 1   MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
           R+ N DGSE + CGNG RC+ R+   R       +FETI GI+ A+      +++DMGE 
Sbjct: 59  RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKARVEGSF-VNLDMGEV 117

Query: 124 ILD----WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177
            L      + +P+A    + D                   + +G PH + ++E  D +  
Sbjct: 118 DLGKGWFGRKVPMAGGEVEAD------------------FLIVGVPHLVIYLEDPDKVDR 159

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            DL  +G  L +   +F EG N++        SL + T+ERGV  LT +CG+ +CAS V 
Sbjct: 160 EDLTRWGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAVV 219

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE--WHDN-NHVFMTGEAKKEWEGKLDIKT 283
           +         ++V   GG  ++   + ++   + + GE     +G ++ + 
Sbjct: 220 AVRRLDLESPITVYNPGGVNIVTANFREDLCDIVLGGETVVVAKGTIEEEA 270


>gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
 gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
          Length = 257

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 124/283 (43%), Gaps = 38/283 (13%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  ++ID R          + AL  D       D ++L+ +  DA++D  +
Sbjct: 4   NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLEN--DATLDFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG+E   CGNG RC+V F     +   + TF+ I G   A    DG +S+ M   
Sbjct: 62  VYYNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG-VSLKM--- 117

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                 I   +   L N   ++ G+PH +  VE+ L ++++ + 
Sbjct: 118 ----------------------IDVDDVNVLENYMFLNTGSPHHVQLVEN-LKNFEVFTQ 154

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
           G  +       EG N++     S ++  +RT+ERGV   T +CG+   A  +A    +K 
Sbjct: 155 GKEIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIALHKTNKL 214

Query: 243 -NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
               V++   GG L +++   +    +VF+ G A   ++G  +
Sbjct: 215 KENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKGVWE 257


>gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
 gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
          Length = 331

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 131/293 (44%), Gaps = 29/293 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           V   K  G GN  L+ID       +T D     A++    D     D ++ + + Q A  
Sbjct: 3   VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFVSESQQA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR---DG--S 115
           DA +R+ N DGSE   CGNG+RCV R+++ +  +     ET++  L A++     DG  +
Sbjct: 61  DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARKAEPLLDGIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++     D   +P+    + +  +       +  F      V++ NPH I FVE++ 
Sbjct: 121 FRVEISPVSFDLNKLPMHIDKEVLINEPVKALSEDLSFT----AVAVPNPHLIAFVENEG 176

Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +  D     +     P  +F +GVN+S A+      L +RT+ERGVG T ACG+A  AS 
Sbjct: 177 FRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNACGTAMSASS 236

Query: 234 VASGCLHKT--NRAVSVKMLGGGLL-----IEWHDNNHVF---MTGEAKKEWE 276
           + +  L        + V   GG +      IE  +    +   + G A   +E
Sbjct: 237 LVACLLRLRPFGEMIDVFNNGGKVRCFVQKIE-KEGEPAYTIDLIGNATYLYE 288


>gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
 gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
          Length = 330

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 21/294 (7%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--------THFDQIMLIH 53
           +S++V   K  G GN  +++D      N  + A    S D             D ++ + 
Sbjct: 4   ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63

Query: 54  -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            + Q   +   + +I  DGS    CGNG R    +   +        ET  G   A  + 
Sbjct: 64  INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATLSG 123

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D +I+++MG P+   + +PL    D    D         +   +   V+ G PHA+  V 
Sbjct: 124 D-TITIEMGTPVFTPRCVPLTTDRDTALID-------EQIGSLSITAVNTGVPHAVGMV- 174

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
           DD+    L      +     F  GVN+++A +T       RT+ERGV   T +CG+ A A
Sbjct: 175 DDIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234

Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
               +  +    T+  ++V+  GG L +    +    +TG  ++E++ +L + T
Sbjct: 235 IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288


>gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 304

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 1   MPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 60

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113
               + F+   N DGS  + CGNG+R   R+L              T  G+     ++  
Sbjct: 61  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 120

Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
                       G+I+V MG  +L  + + +     +                     VS
Sbjct: 121 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 164

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV DDL H              ++ +GVN+          + +R  ERG G 
Sbjct: 165 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 223

Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T +CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A   
Sbjct: 224 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 283

Query: 275 WEGKL 279
            EG +
Sbjct: 284 AEGTI 288


>gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10]
          Length = 340

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 148/301 (49%), Gaps = 26/301 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHD 54
           +  MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D
Sbjct: 4   KKIMVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVND 63

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
               +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D 
Sbjct: 64  PVRENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDF 123

Query: 115 SISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168
           + +V    P    ++ P+     A  FD +  DR   G    L+    F  +++ NPH I
Sbjct: 124 ASNV----PAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLI 179

Query: 169 FFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            FV +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG
Sbjct: 180 SFVNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACG 239

Query: 227 SAACASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL 279
           +   A+ +A         + +  ++V   GG +  I  ++NN+  + + G A    +  +
Sbjct: 240 TGMSATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNYWIELIGNATFTHQISI 299

Query: 280 D 280
           D
Sbjct: 300 D 300


>gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
 gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
          Length = 355

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 154/327 (47%), Gaps = 39/327 (11%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHD 54
           +  MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D
Sbjct: 19  KKIMVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVND 78

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
               +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D 
Sbjct: 79  PVRENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDF 138

Query: 115 SISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168
           + +V    P    ++ P+     A  FD +   R        L+    F  +++ NPH I
Sbjct: 139 ASNV----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLI 194

Query: 169 FFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            FV +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG
Sbjct: 195 SFVNQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACG 254

Query: 227 SAACASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL 279
           +   A+ +A         + +  ++V   GG +  I  ++N +  + + G A   +  ++
Sbjct: 255 TGMSATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNAT--FTHQI 312

Query: 280 DIKTGKWIK----------KNEDDEAY 296
            I   ++++          +  +  AY
Sbjct: 313 SIDE-EYLRNSNFATAQITETTEQNAY 338


>gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 268

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 42/291 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F K +G GN  +++D R          +  L         D I+LI +  D+  D +++
Sbjct: 4   NFFKYQGTGNDFILLDDRTKKIVKEYTILKKLCNRHFGIGADGIILIQN--DSKSDFYMQ 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG-----ILVAKENRDGSISV 118
             N DG E   CGNG RC + F       K     F  I G     I+  ++N    +S+
Sbjct: 62  YYNSDGKESTMCGNGGRCAIFFAKKLGINKENKIHFRAIDGHHYGLIIKNEKNDKCLVSI 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           ++                  + ++   I P           ++ G+PH I FVE+ +   
Sbjct: 122 NL----------------INIQKNEIEIHPE-------HVFLNTGSPHHIIFVEN-IKEI 157

Query: 179 DLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           ++   G  +  ++P   +GVN++   +   ++L +RT+ERGV   T +CG+   ASV+A+
Sbjct: 158 NVYEEGKKIRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTASVIAA 217

Query: 237 GCLHKTN--RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281
              ++ +    + V  +GG L +   +  +    +++TG  +  ++G + I
Sbjct: 218 YETNRISSIEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQGCIFI 268


>gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
 gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
          Length = 334

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST---DDNTHF----DQIMLIHDFQD 57
           MV+  K+ G  N   ++D       +T + + + +    D  T      D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ +  + SF  +T+   L  ++++D + +
Sbjct: 61  EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKDFAPN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  FD +  DR     +  ++    F  +++ NPH I F+
Sbjct: 121 V----PAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
               +    L + G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279
            A+ +A    H      +  +SV   GG +   + + ++ + + + G A       L   
Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGGMVKTVVHYEESQYWIELIGNATFTHHLSLDEA 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++TG +    I +  +  AY
Sbjct: 297 DLRTGTFEHVKITETNEQTAY 317


>gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
          Length = 283

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 108/294 (36%), Gaps = 37/294 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  +V+D R    +I ++    +         D ++ +   Q     A + + N
Sbjct: 9   KYHGLGNDFVVLDRRQTGVDIDAELSRWMCDRRRGIGADGVLSLLPSQQGL--ARMVVHN 66

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVA----KENRDGSISVDMGE 122
            DGS  + CGNG+RC V++L      +      ET  G+L      +      + + MG 
Sbjct: 67  ADGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMGP 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L    +P       +    F   P+          VSMGNPH +         Y+   
Sbjct: 127 ARLVAPNLPSG-----VTGQPFVEAPIPEHLGLRGTAVSMGNPHLVLLGHP---LYEAER 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA----------ACGSAACAS 232
            G +L  HP F +  N+   RV   + L +  WERG GLT                   +
Sbjct: 179 LGPVLEHHPSFPDRTNVEFVRV-DPDGLTVVVWERGCGLTQACGTGACAAA--------A 229

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGK 285
                     +  + V + GG L I    + + + + G     +EG + I   +
Sbjct: 230 AAVLARRLPADTWLRVTLPGGDLQIRVPSDLSEIRLRGPVAAVFEGVVTIPAAR 283


>gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118]
          Length = 334

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D +  
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  F  +  DR     V  L+    F  +++ NPH I FV
Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             + +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIY 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
 gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
          Length = 334

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D +  
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  F  +  DR     V  L+    F  +++ NPH I FV
Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             + +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1]
 gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1]
          Length = 286

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + + K   +GN  +V+D R         T D I  +         D I+          +
Sbjct: 1   MRYHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDGILW-GPLPSKQSE 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-ISV 118
             +RI N DGSE +  GNG+R   RFL  +  ++  +FT ET  G + +    +G  I+V
Sbjct: 60  FGLRIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKENGRLITV 119

Query: 119 DMGEPILDWKLIPL--ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            MG    D   IP+  A +  ++  ++  +      +       ++GNPH +  +  ++ 
Sbjct: 120 AMGRVSFDSAKIPVNLAGAAREVINEKLTVLDREFTYC----AATIGNPHCVIPLA-EIS 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                 +G  +  HP F    N+   RV   +++ L  WERG G T A GS++ A+   +
Sbjct: 175 PEIAHRYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAVA 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L   +R V+V M GG + IE   +  + MTG   K  EG +
Sbjct: 235 HRLGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277


>gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 277

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 36/289 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           M++F KM G GN  ++ID R             + A+     +   D ++L+   +    
Sbjct: 1   MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVE--RSPRA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D   R  N DGSEV+ CGNG RCV RF   + +  +  +FET+ G++ A+   D  + + 
Sbjct: 59  DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAGLIDAELRGDD-VKLR 117

Query: 120 MGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + EP      + IP+      +D                   ++ G PH + FVE +L  
Sbjct: 118 LTEPSSLQANQPIPVGDEILTVD------------------SLNTGVPHVVAFVE-ELGG 158

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           +D+  +G  L     F   G N +   VTSL SL +RT+ERGV   T ACG+ + AS +A
Sbjct: 159 FDVFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALA 218

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
           +         V V +  G  L I +   +    +V+M G  +  +EG+L
Sbjct: 219 AAARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL 267


>gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
 gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
          Length = 259

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 109/285 (38%), Gaps = 39/285 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
             + F+K +G GN  ++ID R      + T               D +ML+     A  D
Sbjct: 1   MTISFSKYQGTGNDFVIIDNRLDIFPKDDTKLVAQLCDRKFGIGADGLMLLESHPSA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F  +  +     TFE + G+  A   +DG + + M
Sbjct: 59  FRMVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATV-KDGIVHLKM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                D   I                             +  G+PH I  V  D+    +
Sbjct: 118 ----QDVAEI---------------------KTTPEYSFLDTGSPHHIKMVS-DVKTVAV 151

Query: 181 ASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +    ++ E G N++  +        +RT+ERGV   T +CG+   A  +A+  
Sbjct: 152 KEEGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHN 211

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGK 278
              T    + + + GG L + +         V++ G A   ++G+
Sbjct: 212 NGVTSKNNIQLDVEGGKLAVSFTKTATGYTDVYLIGPATFVFKGE 256


>gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
          Length = 286

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 111/285 (38%), Gaps = 32/285 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------LIHDFQD--A 58
           F K  G  N  +++        +T   + AL         D ++       + D  D   
Sbjct: 15  FLKGHGTENDFVILPDPDGELKLTDSRVQALCDRRRGLGADGVLRVVRTAALEDAPDSVP 74

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116
               F+   N DGS  + CGNG+R    +L      +       T  G+       DG +
Sbjct: 75  GDVWFMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRV 134

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG   L        RS   + ++ F               V +GNPH     E DL 
Sbjct: 135 TVDMGPAAL------FGRSRTAVGKENF-----------PGVAVDLGNPHLACVTEADLD 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL+S      +  +F +GVN+   + T    + +R +ERGVG T +CG+   A+ VA+
Sbjct: 178 GLDLSSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAA 235

Query: 237 G-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 T     V + GG + +E  +     +TG A     G+LD
Sbjct: 236 LDADGATTGHRIVDVPGGTVEVEVTEQTS-TLTGPAVLVAAGRLD 279


>gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           V F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 15  VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 74

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113
               + F+   N DGS  + CGNG+R   R+L              T  G+     ++  
Sbjct: 75  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 134

Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
                       G+I+V MG  +L  + + +     +                     VS
Sbjct: 135 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 178

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV DDL H              ++ +GVN+          + +R  ERG G 
Sbjct: 179 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 237

Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T +CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A   
Sbjct: 238 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 297

Query: 275 WEGKL 279
            EG +
Sbjct: 298 AEGTI 302


>gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
 gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
          Length = 263

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 41/290 (14%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + F K +G GN  ++ID R  + +    A+             D ++LI + +D  
Sbjct: 5   KSMEITFYKYQGTGNDFVMIDDRKENFDAGDLALVSKICDRKFGVGADGLILIRNHKD-- 62

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            D  +   N DGS+   CGNG RC V F     +      F  I G   A    DG + +
Sbjct: 63  YDFEMIYFNADGSQS-MCGNGARCAVAFSAFLEIISDKTQFLAIDGPHEAIIQ-DGLVQL 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG    D + I                           + V+ G+PH +  V   +  Y
Sbjct: 121 LMG----DVEKIEEKAE---------------------DYFVNTGSPHHVRMVS-KISDY 154

Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            +   G  +    M+   G N++     S E + +RT+ERGV   T +CG+   A  +  
Sbjct: 155 PVFDEGKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACALVY 214

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
               +    + +  LGG L + +          +++ G A++ + GK+ I
Sbjct: 215 AK-DQDKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263


>gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis]
          Length = 198

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 9/194 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  L     ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +     +  + +    H  L    VVSMGNPH +  V DD+   ++A 
Sbjct: 121 PDFEPQTVPFRAAKA---QKTYILRAAEHTVLCG--VVSMGNPHCVMQV-DDVSVANVAL 174

Query: 183 FGNLLAKHPMFSEG 196
            G +L  H  F  G
Sbjct: 175 LGPVLENHERFLSG 188


>gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
 gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
          Length = 334

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 153/321 (47%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     A  FD +  DR        L+    F  +++ NPH I FV
Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFSSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279
            A+ +A         + +  ++V   GG +  I  ++N +  + + G A    +  +   
Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++   +    I +  +  AY
Sbjct: 297 DLRNSNFATAQITETTEQNAY 317


>gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 321

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 48/305 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           V F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 18  VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 77

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD- 113
               + F+   N DGS  + CGNG+R   R+L              T  G+     ++  
Sbjct: 78  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 137

Query: 114 ------------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
                       G+I+V MG  +L  + + +     +                     VS
Sbjct: 138 PGADGTTARSAPGAITVSMGRAVLPAETVTVGVGARQ----------------WPTTHVS 181

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV DDL H              ++ +GVN+          + +R  ERG G 
Sbjct: 182 MGNPHAVAFV-DDLDHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T +CG+ ACA  VA+      + AV       +V + GG L+I    +  V MTG A   
Sbjct: 241 TRSCGTGACAVAVAAARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIV 300

Query: 275 WEGKL 279
            EG +
Sbjct: 301 AEGTI 305


>gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
          Length = 321

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 27/295 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  ++ID      N T +     AI           D I+ +   +    
Sbjct: 3   IEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQKSEK--C 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD------- 113
              ++IIN DGSE + CGNG+RCV +FL           ET++ + + ++ +D       
Sbjct: 61  VGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVFT 120

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             I++D      +   +PL    + +  ++          +R    +S+ NPH + FVE 
Sbjct: 121 DEITID--SIDFNVDSLPLVYEKENLFFEKLTAL----SDIREFTAISITNPHLVSFVE- 173

Query: 174 DLYHYDLASFG-NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           ++   +L + G        +  +GVN++  +    +S+ ++T+ERGVGLT +CG+   +S
Sbjct: 174 EIEKEELKAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSS 233

Query: 233 VVASGCLHKTNRAV-SVKMLGGGLL--IEWHDNN--HVFMTGEAKKEWEGKLDIK 282
            +A+   H  N    +V   GG +   +  +++    V M G A   ++  + I+
Sbjct: 234 SIATLLKHGINEKTYNVYNDGGMIQCKVTKNEDGIFRVMMRGNATFIYKSTISIE 288


>gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
 gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
          Length = 327

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 123/290 (42%), Gaps = 27/290 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID        T +     AI     D     D I+       A  
Sbjct: 3   IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFTMKSDKA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GS 115
           DA +R+ N DGSE   CGNG+RCV R++      K    ET++  L  ++  D      +
Sbjct: 61  DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++       + +PL  + + +  ++ +    +  F      +++ NPH I     D 
Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEKINSLSDSLHFT----ALAVPNPHLIAVCSKDD 176

Query: 176 YHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              DL    N+       + +F +GVN+S  +    ES+ +RT+ERGVG T ACG+A  A
Sbjct: 177 IQSDLQK--NISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSA 234

Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWE 276
           S + S      K  R V V   GG +     E +    + + G A   + 
Sbjct: 235 STLVSCLQGMNKLERPVDVYNNGGKVQCIAHESNGGYTIDLIGNATYMYR 284


>gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
 gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
          Length = 257

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 118/285 (41%), Gaps = 39/285 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    +   T               D  +L+ +  D +VD  
Sbjct: 1   MTFYKYQGTGNDFIIVDNRLQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+  F     + +    F  I G+  AK   D  + + M  
Sbjct: 59  MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEAEFIAIDGLHKAKIKND-IVHLQM-- 115

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                + + + ++FD                      +  G+PH +  V   L  +++ +
Sbjct: 116 -----QDVSIVKAFDS------------------HLFLDTGSPHHVELVTG-LKDFEVKA 151

Query: 183 FGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G+ +    P    G N++     S  +  +RT+ERGV   T +CG+   A  +A     
Sbjct: 152 NGSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALAMHKSG 211

Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
           KT    V++   GG L I ++ +      +++ G A K ++G+++
Sbjct: 212 KTKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256


>gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
 gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
          Length = 334

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D +  
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKENDFAKD 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           V    P    ++ P+     A  F  +  DR     V  L+    F  +++ NPH I FV
Sbjct: 121 V----PAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             + +    L   G  L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
 gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
          Length = 276

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 122/282 (43%), Gaps = 24/282 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R  +     +   A        +   D +M + D  + + D 
Sbjct: 3   IVYTKMQGAGNDFIVIDNRRYNFSSKQLAKLAAQVCQRKFSIGADALMAV-DHPEGTGDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+    ++  ++   ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYD 179
            P +     P A            +  V+++ L +P     G PHA+       +     
Sbjct: 122 PPTVAKFDQPFA---------DREVPVVDYIELGDP-----GIPHAVVKYPGLQETSLDA 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA-SG 237
           L      +     F +G N++     S   L +RT+ERGV G T ACG+ + A+  A + 
Sbjct: 168 LTDLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVAR 227

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +T   + + +LGG L +E   +  + + G+A    EG++
Sbjct: 228 RREQTQANLVLHVLGGELRVEVA-SEELQLIGDAIFVSEGRI 268


>gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
 gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
          Length = 334

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 146/321 (45%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D     +++T   + A +              D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  + +  
Sbjct: 61  KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEENFAK- 119

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
              G P    ++ P+     A  F  +  +R     V  ++    F  +++ NPH I FV
Sbjct: 120 ---GVPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINFV 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             + +    L + G  L   +P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQIAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKL--- 279
            A+ +A    H      N  + V   GG +  + H ++  +   +TG A       +   
Sbjct: 237 SATSLALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNATITHHIIISKS 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++   +    I + ++ +AY
Sbjct: 297 DLRNNNFANVQISETKEQQAY 317


>gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
 gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
          Length = 330

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-------THFDQIMLIHDFQD 57
           MV   K+ G  NK  ++D       ++   + AL+              D +++I D   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  +  F  ET+   L      D + +
Sbjct: 61  PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHREADLADN 120

Query: 118 VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+        FD +  D      V        F  +S+ NPH I FV
Sbjct: 121 V----PTFSVEISPVTFAKETLPFDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +++  H   L   G +L   +P F +GVN+S A++    +L +RT+ERGVG T ACG+  
Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282
            A+ +A    H      +  +SV   GG +    H  +  F   + G A   +  K++I 
Sbjct: 237 SATSLAFCLNHPEMADFDELISVYNPGGMVKTRVHSRDDTFSIDLIGNAT--FTHKIEIP 294

Query: 283 TGKWIKKNEDDE 294
                  + +  
Sbjct: 295 EADLHANDLEHA 306


>gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
 gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
          Length = 272

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 29/285 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
             + F KM+G GN  +VID +  H   + + +          +   D +M++   Q+   
Sbjct: 1   MKIPFYKMQGAGNDFIVIDNQKLHLSNEQLVALTKKICQRRLSVGSDALMVVDVPQNTG- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG+E + CGNG RC+ R+     +       ET+ G + A    + +  V 
Sbjct: 60  DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + EP ++   +P            +    V+++ L NP     G PH +    D L    
Sbjct: 120 LNEPTVEQFDLP------------YENISVDYIELGNP-----GLPHLVVRC-DALATEP 161

Query: 180 L---ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           L    SF   L       +G N+++  V     + LRT+ERGV G T ACG+ A A+  +
Sbjct: 162 LASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYS 221

Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                      VS++ LGG L ++   +  +F+ G+     EG +
Sbjct: 222 LVKKGIVPSTTVSLQTLGGVLQVQVQKDQ-LFLIGDTNIVVEGSI 265


>gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32]
 gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463]
          Length = 334

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 79/308 (25%), Positives = 150/308 (48%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L+   TD  T      D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D + +
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDDFASN 120

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           V    P    ++ P+     A  FD +   R        L+    F  +++ NPH I FV
Sbjct: 121 V----PAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L  K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282
            A+ +A         + +  ++V   GG +  I  ++N +  + + G A   +  ++ I 
Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNAT--FTHQISID 294

Query: 283 TGKWIKKN 290
             ++++ +
Sbjct: 295 E-EYLRNS 301


>gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 282

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 12/266 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G GN  LV D +     +    I  +         D I++     +     ++RI
Sbjct: 5   FEKYHGNGNDYLVFDTKKFEYELQGSQIREICDRHFGVGSDGILM--GPYEKEDGIYVRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK--ENRDGSISVDMGE 122
            N DGSE +  GNG+    +FL     +     T  T+ G +      +++G+++V MG+
Sbjct: 63  FNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNVAMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  IP+     ++  +         +       +++GNPH +  + D+L   ++ S
Sbjct: 123 VSYMSDEIPVTGESREVIEEAMEFQGQKVITT----CLTIGNPHCVI-IRDELVKKEVKS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++     F   +N+   +V + E + +  +ERG G T + GS++CA+   +  L  T
Sbjct: 178 LGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYKLGLT 237

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT 268
           +R V V M GG + +E  ++   FMT
Sbjct: 238 DRKVKVHMPGGTVEVEIEEDGMTFMT 263


>gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium]
          Length = 261

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 39/282 (13%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +  GN  ++ID R      N T               D ++L+        D  
Sbjct: 3   INFYKYQATGNDFVIIDNRLKTFTKNNTKLIARLCDRRFGIGADGLILLELAD--GFDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+V         +  T F  + G+  A       +S+ M +
Sbjct: 61  MIYYNADGKESSMCGNGGRCIVALAQRLGMIQGSTNFIAVDGLHKATIQG-SQVSLKMRD 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                K                         L   FVV  G+PH +  +  +L   D+  
Sbjct: 120 VFKTAK-------------------------LGGGFVVDTGSPHCVL-MRSNLSAVDVQF 153

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G+ L   P F  EG+N++  +  S E   +RT+ERGV   T +CG+   A  +A   L 
Sbjct: 154 EGSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHALK 213

Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277
           KTN+  + ++  GG L + +   N    +V+++G A   +EG
Sbjct: 214 KTNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255


>gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
 gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
          Length = 271

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 26/285 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           S + F K    GN  LVI+ R       S A    + +     D I  +   + A    F
Sbjct: 2   SGIGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLD--RRADGSFF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVD 119
           +R+ N DGSE +  GNG RCV  +L +   R+     T  GI   +       +  I   
Sbjct: 60  LRLFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESA 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---Y 176
           MG P +  + I               I  VN +      +V++GNPH + F + +    +
Sbjct: 120 MGVPRVMPRAI--------------EIAGVNGVI--EGAMVNVGNPHYVIFPDSEDFSSH 163

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                  G  ++  P+F  G N+   RV + + ++ R +ERG G T + G+  CAS  A+
Sbjct: 164 GMSWQELGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAA 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             L    R ++    GG   + W D  + + +TG A+   +G+++
Sbjct: 224 MTLRAVARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268


>gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
          Length = 309

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 128/313 (40%), Gaps = 43/313 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------------------ 42
           M +  V F K  G GN  LV+D         +         +                  
Sbjct: 1   MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60

Query: 43  NTHFDQIMLIH-DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET 101
               D ++ +  + +       + ++  DGS    CGNG R V  +   R   + F  +T
Sbjct: 61  RRGADGVLFLSVEERFNPTRVVMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMIDT 120

Query: 102 IRGILVAKENRD-GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
             G   A  N D  + +++MGEP  D   +PLAR       +     PV  L +     V
Sbjct: 121 QAGTRRASVNADATAATIEMGEPTFDPARVPLARD------EPLIDEPVEGLTV---TAV 171

Query: 161 SMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----- 209
           + G PHA+ FV+      D +   DL +    +    +F EG N+++A V    S     
Sbjct: 172 NTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDGPA 231

Query: 210 -LDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNHVF 266
            +D RT+ERGV G T +CG+ A A V A+  L   +   +V +  GG L +   D  H  
Sbjct: 232 LIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGHAT 291

Query: 267 MTGEAKKEWEGKL 279
           +TG   +E+EG L
Sbjct: 292 LTGPVAREYEGTL 304


>gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58]
 gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58]
          Length = 315

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 41/308 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD------ 57
            V F K  G GN  +++     + ++ +  +  L+        D ++     +       
Sbjct: 18  RVPFTKGHGTGNDFVLLADPDGNVHLEAAQVAVLADRHRGIGGDGVIRAVPSRHVEEGRA 77

Query: 58  -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILV 107
                   + F+   N DGS  + CGNG+R  V FL  +        +S T  T  G+  
Sbjct: 78  LLAAHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKT 137

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
                 G  ++DMG        +    + D M        P      R    VSMGNPH 
Sbjct: 138 VSRLAHG-YAIDMGPWSYLDPELAEEAASDAMVLAAGLADP------RPALSVSMGNPHT 190

Query: 168 IFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGV 219
           +  +   +DL   DL          P  S G N+                  +R  ERGV
Sbjct: 191 VVPLASFEDLEGLDLT---RAPEVDPAPSHGTNVEFVAAHEPLVREGVGRARMRVHERGV 247

Query: 220 GLTAACGSAACASVVA--SGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKK 273
           G T +CG+ ACA  VA  +      + +  V++ GG L +++        HV + G A+ 
Sbjct: 248 GETQSCGTGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAEL 307

Query: 274 EWEGKLDI 281
            ++G+L +
Sbjct: 308 VFDGELTV 315


>gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
 gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
          Length = 335

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + AL     D  T      D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET++  L    + D    
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDDF--- 117

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     A  FD++  +R     V        F  +++ NPH I FV
Sbjct: 118 -FPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 172 EDDLYHYDL-ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D+     +    G  L  ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         ++V   GG +    H ++    + + G A   +  ++++ 
Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294

Query: 283 TGKWIKKNEDDE 294
                     D 
Sbjct: 295 EAALHDAQVTDA 306


>gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262]
 gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262]
          Length = 329

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 24/301 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L   +++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     V  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D   +  + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
            A  +    L K      ++V   GG + +    +      + + G A     G +  + 
Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYER 297

Query: 284 G 284
           G
Sbjct: 298 G 298


>gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
 gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
          Length = 301

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 27/287 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
            + ++F K+ G GN  + +DM         +   A        +   D ++++     A 
Sbjct: 28  GTTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVEPS--AG 85

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118
               +R+ N DGSE + CGNG RC+ RF   R +     TFET+ G++ A+     +  +
Sbjct: 86  AHFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARVEGSFA-EI 144

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GE       I    + D                      + +G PH + F  ++L   
Sbjct: 145 DLGEQSFAPDWIDRPLTMDGA--------------AFRSCFLWVGVPHLVLFAPEELSRD 190

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D    G        +F +G N++ AR      L   T+ERGV  LT +CG+ + A+ +++
Sbjct: 191 DCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAALSA 250

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           G L   +  + V   GG   + +   +       + G+     +G+L
Sbjct: 251 GLLFGMDSPIEVHNPGGTNRVAFERLDGTRFRTVLGGDTAVVAKGEL 297


>gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
 gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 38/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +++D R          I  L         D ++L+ +  D + D  +
Sbjct: 1   MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLCDRRFGIGADGLILLEN--DPNYDFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RC+V F     +      F    G   A+ + +G I + M   
Sbjct: 59  VYYNSDGGESTMCGNGGRCLVAFAFFLDIFEDKCRFIATDGEHEAEIH-NGIIKLKM--- 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                ++  V+H    N FV++ G+PH + +VE+ L  Y +   
Sbjct: 115 --------------------INVDAVSHD--GNDFVLNTGSPHYVKYVEN-LKDYPVYDE 151

Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
           G  +     + E G+N++     S   + +RT+ERGV   T +CG+   AS +     H 
Sbjct: 152 GYGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALTFLQKHN 211

Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              +V VK LGG L +    +     ++++ G AK+ + GK D+
Sbjct: 212 L-TSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254


>gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
 gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
          Length = 256

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 118/285 (41%), Gaps = 40/285 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R        +D I+ +         D I+LI   +DA  D  
Sbjct: 3   LPFLKYQGTGNDFVMIDNRTKIFPKKNTDKISEICDRHFGIGADGIILIE--EDADYDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DGSE   CGNG RC V F    +M  +  TF  + G   A  N D  IS+ M  
Sbjct: 61  MIYYNADGSE-TFCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNNDF-ISLQM-- 116

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                  I         N      G  H +  V +DL  Y +  
Sbjct: 117 -----------------------IDVSEFQVKENSIFTYTGTQHHVEMV-NDLEEYPVYE 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +        G N++ A+  +  +  +RT+E+GV   T ACG+   A  +A     K
Sbjct: 153 NGRKIRNSYENP-GSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALAMHKTGK 211

Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           TN   +S+ + GG L + + + N    +VF+ G A   ++G+++I
Sbjct: 212 TNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256


>gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 278

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 10/261 (3%)

Query: 15  GNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEV 74
           GN  LV D       +  + +  L  D N       ++          +++I N DGSE 
Sbjct: 2   GNDYLVFDPNKNEMKLGEEQVKMLC-DRNFGIGSDGILEGPILDGEQMYVKIYNPDGSEA 60

Query: 75  QSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDG-SISVDMGEPILDWKLI 130
              GNGM    R+L     +++   ++ T+ G +     N +G  + + MG+P      I
Sbjct: 61  PKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGTRVKISMGKPTFWSDEI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P+     +M       G + ++       +S+GNPH + ++ +++    +   G      
Sbjct: 121 PVTGERREMVNQTMVFGKIPYITT----CLSIGNPHCVIWM-NEISKELVCRIGEHSENA 175

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  L   +R + V M
Sbjct: 176 PCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANRLGLADRNMYVHM 235

Query: 251 LGGGLLIEWHDNNHVFMTGEA 271
            GG L +E  ++  V+MTGE 
Sbjct: 236 PGGILEVEIKEDGVVYMTGEV 256


>gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e]
 gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561]
 gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
 gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e]
 gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
          Length = 329

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 24/300 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D  G      SDA  A     L   +++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     V  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D   +  + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
            A  +    L K      ++V   GG + +    +      + + G A     G +  ++
Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYES 297


>gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S]
          Length = 329

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 24/300 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L    ++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     V  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D   +  + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
            A  +    L K      ++V   GG + +    +      + + G A     G +  ++
Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYES 297


>gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023]
          Length = 329

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 24/300 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L   +++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +  V++     + + +P+    +K+             F      VS+ NPH I FV
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVIPELDSELAF----SAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D  A+  + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDKQATLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
            A  +    L K      ++V   GG + +    +      + + G A     G +  ++
Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYES 297


>gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 328

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 27/316 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           +++ F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    
Sbjct: 2   AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111
            A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  ++      
Sbjct: 62  KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVRKATSLGF 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +  V++     + + +P+    +K+             F      VS+ NPH I FV
Sbjct: 122 DIPTYQVEISPVKFNPESLPMYVGVEKLFNQVIPELDEELAF----SAVSVPNPHLITFV 177

Query: 172 EDDLYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D            +P F +GVN+S  +  + +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDKQEKLASFLNSENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL---D 280
            A  +    L +      ++V   GG + +    +      + + G A     G +   D
Sbjct: 238 SACSLIKKMLDQDTLETPLNVYNDGGRVQVTAKKDETGDISLQLIGNATFVSTGSVRYDD 297

Query: 281 IKTGKWIKKNEDDEAY 296
           I T    +   +   Y
Sbjct: 298 IVTELTNEATVEQAQY 313


>gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
 gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
          Length = 335

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + AL     D  T      D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET++  L    + D    
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVETMKADLTVAYHDDF--- 117

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     A  FD++  +R     V        F  +++ NPH I FV
Sbjct: 118 -FPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 172 EDDLYHYDL-ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            D+     +    G  L  ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         ++V   GG +    H ++    + + G A   +  ++++ 
Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294

Query: 283 TGKWIKKNEDDE 294
                     D 
Sbjct: 295 EAALHDAQVTDA 306


>gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1]
 gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1]
          Length = 330

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 23/294 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID      N +       AI           D I+ + D      
Sbjct: 3   INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLDSD--RC 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----RDGS 115
           D  +R+ N DGSE   CGNG+RCV R++T    +   T ET++  L             +
Sbjct: 61  DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADLKISSEPSIFAEIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
             V++   + + K +P+      +  ++         F      V++ NPH I  VE++ 
Sbjct: 121 FKVEISPVLFELKHLPMNIDKQTLIDEKVPEISAALTFT----AVAVPNPHLISIVENEH 176

Query: 175 -LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            L +   +   ++   + +F +GVN+S  +    + + +RT+ERGVG T ACG+A  AS 
Sbjct: 177 ILSNEQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMSAST 236

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282
           + +         + + V   GG + +  H N+  F   + G A      KLD+ 
Sbjct: 237 LVTCLSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDLD 290


>gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
 gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
          Length = 274

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 25/288 (8%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +V+ +      +++  A    +   +   D I+++   +  +  A I
Sbjct: 5   LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVGAERSDA--ARI 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R  N DGS  + CGNG RC  R+   R  ++   F   T  G L      DG   V M E
Sbjct: 63  RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD--L 180
           P             +++  D   +             + +G PHA+ FV D   H D  L
Sbjct: 123 P-------------EQVRFDAMTVEAGEEQ--WPLHALWVGVPHAVVFVPDVERHSDEHL 167

Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  L      F  G N++   V     +  RT+ERGV  LT ACG+ A A+      
Sbjct: 168 TALGRALRYDDKHFPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFVVHT 227

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           L      V + + GG L ++   +  +++ G+A+    G L  +   W
Sbjct: 228 LLDRPWPVDLVVDGGRLTVD-QRDGRLWLIGDARIIARGTLSPEALAW 274


>gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
          Length = 261

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 39/289 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVD 61
             + F K +G GN  ++ID R    +     I A           D  +L+ +      D
Sbjct: 1   MKIPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V+F     +   +  F  + G+  A   ++  +++ M
Sbjct: 59  FEMVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAFI-KEKLVNLQM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                                   ++  ++ L   + F ++ G+PH +  VE  +  + +
Sbjct: 118 -----------------------MNVAGIDTLA-DDTFFLNTGSPHYVKKVE-KIEQFPV 152

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +     F   G N++   +     L +RT+ERGV   T +CG+   A+ +A+  
Sbjct: 153 FETGKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEK 211

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282
           L    + V +K LGG L + +          VF+ G AK+ + G++++ 
Sbjct: 212 LGIAPQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEVD 260


>gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205]
 gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205]
          Length = 278

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 109/295 (36%), Gaps = 40/295 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58
           ++F K  G GN  +++        +T   + AL         D ++ ++     A     
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLELTPGLVAALCDRRRGIGGDGVLRVVRAAHHADGVAL 60

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VR+L                T  G++ A+   
Sbjct: 61  ADEAEWFMDYWNSDGSAAEMCGNGARVFVRYLLESGLAAPSGAVLPVATRAGVVRARVEG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +G ++V+M  P L                    +  +  L L     V +GNPH +  V 
Sbjct: 121 EG-VAVEMRRPRLAGA----------------SVAGLGGLALP-GTAVDVGNPHLVCPVP 162

Query: 173 DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACG 226
             L    L          P+ F  GVN+    V          + +R +ERG   T +CG
Sbjct: 163 AGLELSALD-LTRAPEFDPVVFPAGVNVEFVTVGDPVDGADGHVRMRVYERGSAETHSCG 221

Query: 227 SAACASVVASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + ACA    +      +   V+V + GG L++        +++G A     G++ 
Sbjct: 222 TGACAVAAVALRDGGRDTGVVAVDVPGGRLVVTLT-TQSCWLSGPAVLVATGEVS 275


>gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378]
          Length = 329

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 24/297 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L   +++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     V  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D   +  + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQTVLDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
            A  +    L K      ++V   GG + +    +      + + G A     G + 
Sbjct: 238 SACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVS 294


>gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
 gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
          Length = 271

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 112/286 (39%), Gaps = 27/286 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+++           A    +   +   D +  +   + A     +
Sbjct: 1   MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLE--RTAEGAFNL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK----ENRDGSISVDM 120
           R+ N DGSE +  GNG RCV  +L    +    T  T  G    +    E  +  IS  M
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YH 177
           G P +                   H   V+ +       V++GNPH + F + +    + 
Sbjct: 119 GVPQVMP-----------------HSFDVDGVGNVQGVDVNVGNPHFVVFTDAEDFSSHG 161

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  +  HP F  G N+   RV   + ++ R +ERGVG T + G+  CAS  AS 
Sbjct: 162 LSWEELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASI 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            L      ++   +GG   + W   +  + +TG A+    G++ + 
Sbjct: 222 ALRGAGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSVD 267


>gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
 gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 119/302 (39%), Gaps = 42/302 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST------DDNTHFDQIMLIHDFQDAS 59
           V F K  G GN  L+        +  + AI           D     D ++++       
Sbjct: 3   VAFEKYHGTGNDFLIC-GADEAVDWGAFAIEHCDRETGIEVDGRRGADGVLVLSLS---G 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR------------------KSFTFET 101
               +R+   DG     CGNG RC  ++   R++R                    F  +T
Sbjct: 59  ERVRMRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDT 118

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             G   A+   D +I ++MG P  +   +PLAR    +  D         +       ++
Sbjct: 119 PAGERRARVGED-TIEIEMGVPSFEPADVPLAREEPLIRED---------VEGWEVTALN 168

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-G 220
            G PHA+ FV DD+   DL +    +    +F EG N+++A  +     D RT+ERGV G
Sbjct: 169 TGVPHAVVFV-DDVSTTDLGAMAPPIRHAEVFPEGANVNLASPSERG-FDQRTFERGVEG 226

Query: 221 LTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+ A A    +  +       VSV   GG L +   D+    ++G  + E  G++
Sbjct: 227 ETRSCGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286

Query: 280 DI 281
             
Sbjct: 287 SP 288


>gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
 gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
          Length = 266

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 27/283 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+I+           A    S + +   D I  +   + A    F+
Sbjct: 1   MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLE--RRADGSFFL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE----NRDGSISVDM 120
           R+ N DGSE +  GNG RCV  +L            T  G+   +          I   M
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD- 179
           G P +  + I L                   + +    +V++GNPH + FV+ D +    
Sbjct: 119 GVPRVMRRAIEL-----------------EGVGVVEGAMVNVGNPHYVLFVDTDDFGSHG 161

Query: 180 --LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  +A  P+F  G N+   +V S + ++ R +ERG G T + G+  CAS  A+ 
Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKL 279
            L    R+++    GG   + W  N    M TG A+    G++
Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAEFVCVGEV 264


>gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 336

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 136/290 (46%), Gaps = 26/290 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  NK  ++D       +T   + AL+              D ++++++   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V A +R+IN DGSE   CGNG+R V R++  +  + SF  ET++  L   ++ + +  
Sbjct: 61  PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIETMKADLKVAKHDEFA-- 118

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
              G P    ++ P+        FD +  +R     V  L  +  F  +++ NPH I F+
Sbjct: 119 --DGVPAYAAEISPVLFDKHDLPFDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176

Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           ++       L   G  L  K+P +S+GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAK 272
            A+ +A    H      ++ ++V   GG +    H+++    + + G A 
Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGGMVKTIVHNDDDQYWIELIGNAT 286


>gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
 gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
          Length = 281

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 27/284 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64
            KM+G GN  ++ID          +   A            D ++ +     D+  D   
Sbjct: 12  YKMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIW 71

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD-GSISVDMGE 122
              N DGS  + CGNG RC  R      +  ++    T  G + A+   +     V +  
Sbjct: 72  HFYNADGSRAEMCGNGSRCAARLAYELELAGRTHVLGTDAGPVRAEVLPETDEAKVQLTA 131

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI     + L+ +  ++     + G  + + + +                      DLA+
Sbjct: 132 PIDLKTSMTLSAAGRELTVHHVNTGVPHVVQVVDDVD-----------------SVDLAT 174

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
               L  H  F   G N++  +VT  +++ LRT+ERGV   T ACG+ A A+V  +  L 
Sbjct: 175 IAPALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAAAVYIANQLG 234

Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
               A +V   GG  L I   +N ++++ G+A   ++G+L +++
Sbjct: 235 LCAPAATVTTSGGEHLTIS-QENGNLYLQGQAVLVYKGRLFLRS 277


>gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
 gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
          Length = 280

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 124/293 (42%), Gaps = 41/293 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           +Q   + F K +G GN  +++D R    D+     I  +         D +M +   Q  
Sbjct: 12  LQYMKLKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGICNRRFGVGGDGMMFLQ--QKD 69

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDG-SI 116
             D  +   N DG     CGNG RC+V F    ++      F  + G   AK +  G  +
Sbjct: 70  GYDFEMVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSGDWV 129

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           S+ M                  ++ D       ++       V++ G+PH +  V DDL 
Sbjct: 130 SLQM------------------INVDVIKKDGEDY-------VLNTGSPHYVRLV-DDLQ 163

Query: 177 HYDLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
           + D+   G  +  +  +  +G+N++       + L +RT+ERGV   T ACG+   A  +
Sbjct: 164 NVDMYEEGRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAVAL 222

Query: 235 ASGCLHKTNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281
           A          +S  VK+LGG L I +  +      +F+ G AKK +EG+LD+
Sbjct: 223 AMAKYQNRTGEISTPVKVLGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDL 275


>gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 328

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 37/324 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE- 119

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+
Sbjct: 120 ---GVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274
            AS +A       L    + +SV   GG +    H  +H   + + G A +         
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPED 296

Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296
               G++ ++  K  K+  +  AY
Sbjct: 297 QLHSGQVKLEAVK-TKETGEQAAY 319


>gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec]
 gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec]
          Length = 307

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 123/301 (40%), Gaps = 36/301 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI-------HDFQD 57
           V F K  G GN  L++       +++ + + AL         D ++ +            
Sbjct: 11  VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS 115
           A+   F+   N DGS  + CGNG+R   R+L              T  G+   +    G 
Sbjct: 71  AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V+MG P L    +P+  +  +                     VSMGNPHA+ F  DDL
Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREFAAVP----------------VSMGNPHAVCF-ADDL 173

Query: 176 YHYDLASFG--NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
               LA             F EGVN+ +  V + + + +R +ERGVG TA+CG+ ACA  
Sbjct: 174 DPAGLARLDLRAPAYPAAAFPEGVNVEVV-VPAPDGVAMRVFERGVGETASCGTGACAVA 232

Query: 234 VASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           VA    +       V V + GG L + W ++  V ++G A    +G L      W++   
Sbjct: 233 VAWAARNGDGPPAEVEVDLPGGRLTVGWRES-TVLLSGPAVLVSDGVLRP---DWLRAAG 288

Query: 292 D 292
            
Sbjct: 289 G 289


>gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 329

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 28/300 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL+              D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L          S
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     +  FD +D D      V        F  +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++ + D L   G  L   +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294


>gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 242

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103
             DQ+++I +   A  D F+ I N DGS+ + CGN  RCV   L S    +  T E   +
Sbjct: 22  GCDQVIVITNSSLA--DCFMHIYNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNK 79

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            IL   +  D SI V+MG+P+L W  IPL+   D +        P+    L++P  V++G
Sbjct: 80  RILECFKVGDKSIKVNMGKPLLKWHKIPLSTECDTLHL------PIELEMLKDPVAVNIG 133

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPH +FFV D +    L S G  L  H +F + +N+SIA+V     + LR WERG G+TA
Sbjct: 134 NPHIVFFV-DSVNEIPLQSLGPKLENHALFPQKINISIAQVEKSGEIALRVWERGTGITA 192

Query: 224 ACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +CGSAACA++V S      T +  SV + GG LLIEW   N+VFMTG
Sbjct: 193 SCGSAACAALVTSTLRGYLTVQQTSVNLPGGKLLIEWA--NNVFMTG 237


>gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
 gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
          Length = 329

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 134/300 (44%), Gaps = 28/300 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL+              D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L          S
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     +  FD +D D      V        F  +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++ + D+    G  L   +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294


>gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
 gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
          Length = 256

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 114/278 (41%), Gaps = 30/278 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D       +    I AL T       D  +L+   +  + D  +R  N 
Sbjct: 1   MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DG     CGNG RC   F   + +   + +F+       A       + + M EP     
Sbjct: 59  DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEPDTFRD 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            I                    H    N   V+ G+PH I +   +L  +++   G  + 
Sbjct: 119 DI--------------------HANGLNCHFVNTGSPHTIIYT-GELETFNVHDTGYAVR 157

Query: 189 -KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH--KTNR 244
             + +F EG N++  +VT  +SL +RT+ERGV   T ACG+ A A+ + S  L    +  
Sbjct: 158 NNNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTS 217

Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                  G  L +E+ ++   VF++G AK  + G + +
Sbjct: 218 VSVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255


>gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
 gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
          Length = 293

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 118/291 (40%), Gaps = 38/291 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQDAS 59
            K  G  N  +++        I    + AL         D ++ +        ++ Q A 
Sbjct: 13  TKGHGTENDFVIVPDPDGTLEIAPSRVAALCDRRAGIGADGVLRVVRTARMPGYEDQAAE 72

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--------SFTFETIRGILVAKEN 111
            + F+   N DGS  + CGNG+R    F+T+R   K         F   T  GI      
Sbjct: 73  AEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGTRGGIKRVTLR 132

Query: 112 RDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
             G     ++VDMG P+      P  R    +D          H   R+   V MGNPHA
Sbjct: 133 ATGENTADVTVDMGIPVF-----PTERGAVTVDV---------HGTPRDAVDVDMGNPHA 178

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           + FV+       L      ++   +++EGVN+  A   +   L +R +ERGVG T +CG+
Sbjct: 179 VVFVDSTDDAGSLYEM-PTVSPTGVYAEGVNVEFAADVAPRHLAMRVYERGVGETRSCGT 237

Query: 228 AACASVV--ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            ACA ++  A           +V +LGG L      + H+ MTG A   ++
Sbjct: 238 GACAVMIAAARRDAADAGTEYTVDVLGGRLRFVERADGHLEMTGPAALVFD 288


>gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 328

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 37/324 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  + +   F  ET+   L  ++  D +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETMYADLAVRQADDFAE- 119

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+
Sbjct: 120 ---GVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274
            AS +A       L    + +SV   GG +    H  +H   + + G A +         
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPED 296

Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296
               G++ ++  K  K+  +  AY
Sbjct: 297 QLHSGQVKLEAVK-TKETGEQAAY 319


>gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026]
          Length = 333

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 28/299 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61
            K+ G  N   ++D       +T+  +   +              D ++ I+        
Sbjct: 5   YKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +++ +    +  G
Sbjct: 65  AQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDN----LAKG 120

Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174
                 ++ P+     +  F  +  +R     +  ++    F  +++ NPH I F++ + 
Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180

Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +    L   G  L   +P F +GVN++ A++     L +RT+ERGVG T ACG+   A+ 
Sbjct: 181 IESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240

Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285
           +A           N++++V   GG +    H  NH +   + G A   +  +++I    
Sbjct: 241 LAFCLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297


>gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
 gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
          Length = 326

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 24/290 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQ 56
             VD  K+ G  N+  ++D       +T D +     + TD N       D ++LI    
Sbjct: 1   MQVDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTN 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD--- 113
               D  +R+IN DGSE   CGNG+R V R+L+ + K+  F  ET+   L  K+  +   
Sbjct: 61  HKETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKKAEELGK 120

Query: 114 --GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +  V++     + + +P     +K           N  F      V++ NPH I FV
Sbjct: 121 DIQTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRF----SAVAVPNPHLISFV 176

Query: 172 EDD-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           + + LY          L  K+P F +GVN+S   V   +SL +RT+ERGVG T ACG+A 
Sbjct: 177 DHETLYSSQFEDLATYLNGKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGTAM 236

Query: 230 CASVVASGCL--HKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273
            AS +    L   +    + V   GG +   +   ++   +M   G A  
Sbjct: 237 AASSLMYVLLKNGQLEEKIQVTNPGGMVQTVVHKDEDGTYWMDLIGNATY 286


>gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
 gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
          Length = 341

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 29/305 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-----DAINALSTDDNTH--FDQIMLIHD 54
           +   ++  K+ G GN   ++D       I+       AI         H   D I+ +  
Sbjct: 12  RGKPMELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLP 71

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                V   +R+IN DGSE   CGNG+R V R+L+ +  +KSF   T+   L  ++  + 
Sbjct: 72  ETRGDVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANE- 130

Query: 115 SISVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIF 169
              +  G      ++ P++ S D     + ++  H   +  L     F  V++ NPH I 
Sbjct: 131 ---LAPGVKTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKFSAVAVPNPHLIS 187

Query: 170 FVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV+ + L   DL    + L   ++ +F +GVN+S   + S + + +RT+ERGVG T ACG
Sbjct: 188 FVDHETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACG 247

Query: 227 SAACASVVASGCLHKTN-----RAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277
           +A  AS +    L KT+     + +SVK  GG +   +   ++ + FM+  G      + 
Sbjct: 248 TAMSASSLM-YVLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMSLIGNGTFVAKC 306

Query: 278 KLDIK 282
            + + 
Sbjct: 307 TVSLD 311


>gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 283

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 25/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQD-ASVD 61
           V F KM+G GN  + ID R     +    D    +     +   D ++ + +  D   VD
Sbjct: 9   VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISVD 119
                 N DGS  + CGN  RC                  T  G + A+ +   G + V+
Sbjct: 69  YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P  +  L  + R  D+                     V+ G PHA+ +++ D    D
Sbjct: 129 LTPPK-ELSLNNVLRFGDE---------------THEIHFVNTGVPHAV-WLDADAAALD 171

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           + + G  L  H  F   G N +   V    ++ LRT+ERGV   T ACG+ A A  V + 
Sbjct: 172 VRALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITH 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T   V+V+  GG LL    ++  VF+ G+A   + G++  ++
Sbjct: 232 ALGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPES 277


>gi|302866047|ref|YP_003834684.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029]
 gi|302568906|gb|ADL45108.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029]
          Length = 281

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 103/297 (34%), Gaps = 38/297 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59
           ++F K  G GN  +++       ++T   + AL         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60

Query: 60  ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VR+L  R        +    T  G++ A+   
Sbjct: 61  AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLTAPSGGTLPIATRAGLVRARVEG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +  ++V+M  P L                                  V +GNPH +  + 
Sbjct: 121 ED-VAVEMRRPRL-----------------YDTATATLGGLTLPGTAVDVGNPHLVCALP 162

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227
             L    L            F  GVN+               + +R +ERG   T +CG+
Sbjct: 163 AALELTALDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            ACA    +      +   ++V + GG L +    +   +++G A     G L    
Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAA 278


>gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785]
 gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785]
          Length = 333

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 28/299 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61
            K+ G  N   ++D       +T   +   +              D ++ I+        
Sbjct: 5   YKVHGSQNHFFILDQTELSTPLTDTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +++ + +  V   
Sbjct: 65  AQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKEVK-- 122

Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174
                 ++ P+     +  F  +  +R     +  ++    F  +++ NPH I F++ + 
Sbjct: 123 --AFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180

Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +    L   G  L   +P F +GVN++ A++     L +RT+ERGVG T ACG+   A+ 
Sbjct: 181 IESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240

Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285
           +A           N+++ V   GG +    H  NH +   + G A   +  +++I    
Sbjct: 241 LAFCLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297


>gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
 gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
          Length = 257

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 39/285 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
             + F K +G GN  ++ID R        +  IN L         D ++L+ +  D  +D
Sbjct: 1   MQITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N DG+E   CGNG RC+V F     + ++  TF  + G+  A    D       
Sbjct: 59  FKMVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKTTFNAVDGLHNATIKGD------- 111

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              I+  ++I +A   +K                 N   +  G+PH +  V D++  +D+
Sbjct: 112 ---IVSLQMIDVAEVKEK----------------ENYSFLDTGSPHHVQLV-DNVNGFDV 151

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            + G  +        G N++     +     +RT+ERGV   T +CG+   A  +A    
Sbjct: 152 FTEGKKIRYGLYGEAGSNVNFVTKNAKGY-TVRTYERGVEDETLSCGTGVTAVALAMHKS 210

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
             TN   + +K++GG L I +   +    +V++TGEAK+ ++G++
Sbjct: 211 GNTNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255


>gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
          Length = 333

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 28/299 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQDASVD 61
            K+ G  N   ++D       +T+  +   +              D ++ I+        
Sbjct: 5   YKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTRPQAL 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +R+IN DGSE   CGNG+R V R+L  +  + +F  +T+   L  +++ +    +  G
Sbjct: 65  AQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANLRVRKHDN----LAKG 120

Query: 122 EPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-DD 174
                 ++ P+     +  F  +  +R     +  ++    F  +++ NPH I F++ + 
Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGLRFTSIAVPNPHLISFMDQNQ 180

Query: 175 LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +    L   G  L   +P F +GVN++ A++     L +RT+ERGVG T ACG+   A+ 
Sbjct: 181 IKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMSATS 240

Query: 234 VASGCL----HKTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGK 285
           +A           N+++ V   GG +    H  NH +   + G A   +  +++I    
Sbjct: 241 LAFCLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISEAD 297


>gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99]
          Length = 329

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 28/317 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SD   A     L    ++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDTELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQSVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279
            A  +    L        ++V   GG + +   ++    +   + G A    +G +    
Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIGNATFVSKGSVRYEN 297

Query: 280 DIKTGKWIKKNEDDEAY 296
           DI T    +   +   Y
Sbjct: 298 DIVTELTNEATAEQALY 314


>gi|315502606|ref|YP_004081493.1| diaminopimelate epimerase [Micromonospora sp. L5]
 gi|315409225|gb|ADU07342.1| diaminopimelate epimerase [Micromonospora sp. L5]
          Length = 281

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 102/297 (34%), Gaps = 38/297 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59
           ++F K  G GN  +++       ++T   + AL         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60

Query: 60  ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VR+L  R        +    T  G++ A+   
Sbjct: 61  AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLAAPSGGTLPIATRAGLVRARVEG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
              ++V+M  P L                                  V +GNPH +  + 
Sbjct: 121 AD-VAVEMRRPRL-----------------YDTATATLGGLTLPGTAVDVGNPHLVCALP 162

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227
             L    L            F  GVN+               + +R +ERG   T +CG+
Sbjct: 163 AALELTGLDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            ACA    +      +   ++V + GG L +    +   +++G A     G L    
Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAA 278


>gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067]
          Length = 332

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 135/320 (42%), Gaps = 34/320 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D    + +  SDA  A     L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111
           +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVKKASSLGF 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +  V++       + +P+    +K+             F      VS+ NPH I FV
Sbjct: 122 DIPTYQVEISPVNFKPESLPMNLPVEKLINQVVPELDAELAF----SAVSVPNPHLIAFV 177

Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L  ++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKE------WEG 277
            A  +    L +      ++V   GG + +   ++      + + G A         ++G
Sbjct: 238 SACSLIKKMLDRDVLETPLNVYNDGGRVQVTAKEDAKGELSLQLIGNATFVNVGTVSYDG 297

Query: 278 -KLDIKTGKWIKKNEDDEAY 296
            +++  T +      +  +Y
Sbjct: 298 DEVEPLTNE---ATPEQASY 314


>gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
 gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
          Length = 313

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 34/307 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--- 56
           + ++ + FAK  G  N  +++D R    ++T + + AL+        D ++ +       
Sbjct: 6   VPTTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALA 65

Query: 57  --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIR 103
                   + +   F+   N DGS  Q CGNG+R    +L           +     T  
Sbjct: 66  EGRAVLAHEPAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLGTRA 125

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G    ++   G  +VDMG          +   FD  +     + P      R    V +G
Sbjct: 126 GARRVRKEDSGWYAVDMGVWSFPGGDAAVRDGFDA-EVTVSGLEPAGTQVPRPALSVDLG 184

Query: 164 NPHAIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDL 212
           NPH +  +   DDL   DL +  ++L   P+ +EG N+ +      E+         + +
Sbjct: 185 NPHTVVALASLDDLDRADLHTAPDVL---PLPAEGTNVELVVPLGEETSVDGTVVGRVRM 241

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGE 270
           R  ERGVG T +CG+ ACA+ +A              V + GG + +   ++ HV + G 
Sbjct: 242 RVHERGVGETRSCGTGACAAALAVRAWAGAGAPDVWLVDVPGGTVRVTLLEDGHVELAGP 301

Query: 271 AKKEWEG 277
           A    +G
Sbjct: 302 AVLVADG 308


>gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712]
          Length = 268

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 34/280 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD--------ASVDAFIRIINCD 70
           +V D     D   +              D ++ +                + F+   N D
Sbjct: 2   IVPDAENAVDLPPAVVARLCDRRAGIGGDGLLHVVRSAAHPEARHMADEAEWFMDYRNAD 61

Query: 71  GSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           GS  + CGNG+R   R+L     +        T  G+     ++DGS++V MG  +L   
Sbjct: 62  GSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAMGRAVLAEA 121

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            + +                           V+MGNPHA+ FVED  +  +L +      
Sbjct: 122 GVTVTVDGRS----------------WPARNVNMGNPHAVAFVEDLDHAGNLFTEPPY-E 164

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR---- 244
              ++ +GVN+          + +R  ERG   T +CG+ ACA  VA+      +     
Sbjct: 165 PAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAVAVATARRDGADPAETG 224

Query: 245 ---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +V +LGG L+I  H +  + MTG A    EG +D 
Sbjct: 225 TPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVDP 264


>gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
 gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
          Length = 329

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 28/300 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL+              D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L          S
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRET----S 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     +  FD +D D      V        F  +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDLYHYDL-ASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++ + D+    G  L   +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A              +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294


>gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 332

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 136/320 (42%), Gaps = 34/320 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D    + +  SDA  A     L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----- 111
           +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSLGF 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
              +  V++     + K +P+    +K+             F      VS+ NPH I FV
Sbjct: 122 DIPTYQVEISPVNFNLKSLPMNLPVEKLINQVVPELDAELAF----SAVSVPNPHLIAFV 177

Query: 172 EDDLYHYD-LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L  ++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKE------WEG 277
            A  +    L +      ++V   GG + +   ++      + + G A         ++G
Sbjct: 238 SACSLIKKMLDRDVLEIPLNVYNDGGRVQVTAKEDAEGELSLQLIGNATFVNVGTVSYDG 297

Query: 278 -KLDIKTGKWIKKNEDDEAY 296
            +++  T +      +  +Y
Sbjct: 298 DEVEPLTNE---ATPEQASY 314


>gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
 gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
          Length = 333

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T++ + +         +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D    
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +  +R     V  L+    F  +++ NPH I FV
Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFV 176

Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             ++L    L   G  L + +P FS+GVN++   +     L ++T+ERGVG T ACG+  
Sbjct: 177 SMEELNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282
            A+ +A    H      N  +SV   GG +  I   D+ +  + + G A   +   + ++
Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVE 294

Query: 283 TGKWIKKNEDD 293
                ++N D+
Sbjct: 295 ESTIHQENLDE 305


>gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816]
 gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220]
 gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A]
          Length = 329

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 28/316 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
            + F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    +
Sbjct: 3   TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + S
Sbjct: 63  VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
           +    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           + T    +   +   Y
Sbjct: 299 VVTELTNEATAEQAQY 314


>gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
 gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
          Length = 270

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 39/291 (13%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDAS 59
           +   + F K +G GN  ++ID R      T +       +       D +ML+ D   A 
Sbjct: 8   EDMKIHFYKYQGAGNDFILIDNRDLSFKYTGNNAVLQLCNRRFGIGADGLMLLQDH--AD 65

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISV 118
            D  +   N DG     CGNG RC+V F        S T F  + G   AK +  G+   
Sbjct: 66  YDFEMLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGNW-- 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                 +D ++I      D +  D               +V++ G+PH +  V ++L   
Sbjct: 124 ------VDLQMI----DIDHIGND------------GEAYVLNTGSPHYVAQV-NNLETL 160

Query: 179 DLASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+   G+ +  +  +  EG+N++       + L +RT+ERGV   T ACG+   A  ++ 
Sbjct: 161 DVYHEGHSIRNNETYKQEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTAVALSM 219

Query: 237 GCLHKTNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                 N  +   VK+LGG L I +  N     +VF+ G A++ +EG + I
Sbjct: 220 AQHKGQNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270


>gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 328

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 37/324 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +   
Sbjct: 1   MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +  
Sbjct: 61  PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE- 119

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
              G P    ++ P+     +  FD +  DR     V  L     F  +++ NPH I F+
Sbjct: 120 ---GVPAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G  L  ++P FS+G+N++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE-------- 274
            AS +A       L    + +SV   GG +    H  +H   + + G A +         
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296

Query: 275 --WEGKLDIKTGKWIKKNEDDEAY 296
               G++ ++  K  ++  +  AY
Sbjct: 297 QLHSGQVKLEAVK-TEETGEQAAY 319


>gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
 gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
          Length = 330

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 144/327 (44%), Gaps = 37/327 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIH 53
           M+ S ++  K+ G GN   ++D     + +T + +  L+    D +T      D ++ + 
Sbjct: 1   MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+   
Sbjct: 61  AG-HEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADK 119

Query: 114 GSISVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI 168
            +  V    P  D ++ P++         + +++     +  L     F  V++ NPH I
Sbjct: 120 LAEKV----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLI 175

Query: 169 FFVEDD-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            FV+ + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T AC
Sbjct: 176 AFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNAC 235

Query: 226 GSAACASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277
           G+A  AS +    LH       + ++V   GG +   +   +N   +M+  G A +  + 
Sbjct: 236 GTAMSASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKV 295

Query: 278 KL--------DIKTGKWIKKNEDDEAY 296
            +        +     W  +  +  AY
Sbjct: 296 NISQADAINGNFDNFTW-NETGEQAAY 321


>gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 329

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 28/316 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
            + F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    +
Sbjct: 3   TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + S
Sbjct: 63  VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
           +    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNNILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           I T    +   +   Y
Sbjct: 299 IVTELTNEATAEQAQY 314


>gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 263

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 41/283 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G GN  +++D R        T    +          D ++L+ +  D + D  
Sbjct: 1   MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DG E   CGNG RCVV F      M   S  F  I G   A  +    + + M 
Sbjct: 59  MVYYNADGRESTMCGNGGRCVVAFAREIGVMTGNSTRFIAIDGEHHATIDAQNKVHLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               D + I +   +                       +  G+PH + +V  D+   D+ 
Sbjct: 119 ----DVQTIDVHPDY---------------------VFLDTGSPHHVQWVA-DVDKVDVK 152

Query: 182 SFGNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           + G  L    ++++  G N++    T+     +RT+ERGV   T +CG+   A  +A   
Sbjct: 153 TEGAALRYGDLYADKGGSNINFVSPTADG-FAVRTYERGVEDETYSCGTGVTAVAIALYH 211

Query: 239 LHKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276
             +     V++   GG L + +         V+++G A+K ++
Sbjct: 212 TAQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFK 254


>gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
 gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
          Length = 329

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 28/316 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
            + F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    +
Sbjct: 3   TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + S
Sbjct: 63  VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
           +    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           I T    +   +   Y
Sbjct: 299 IVTELTNEATAEQAQY 314


>gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
 gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
          Length = 329

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 127/295 (43%), Gaps = 24/295 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
            + F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    +
Sbjct: 3   TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + S
Sbjct: 63  VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
           +    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279
           A  +    L        ++V   GG + +    +    +   + G A    +G +
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 293


>gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f]
 gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f]
          Length = 311

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 81/304 (26%), Positives = 126/304 (41%), Gaps = 37/304 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI--------HD 54
             V + K  G GN  +++       +++   + A+         D ++ +          
Sbjct: 9   RRVRYVKGHGTGNDFVILPDADGDLDLSVQLVRAICHRGTGVGADGVLRVVLVAAEPAAA 68

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR 112
               +   F+   N DGS  + CGNG+R   R+L         S    T  G+       
Sbjct: 69  AYLGAARWFMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPP 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G +SVDMG P      +P+      + R+   +G            VSMGNPHA+ F  
Sbjct: 129 AGDVSVDMGPPEFASGTVPVTV----VGREFAAVG------------VSMGNPHAVCF-A 171

Query: 173 DDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           DDL   +LA    G  +     F +GVN+ +  V S + + +R +ERGVG TA+CG+ AC
Sbjct: 172 DDLGPSELARLDLGVPVFPAEAFPDGVNVEVV-VPSADGVAMRVFERGVGETASCGTGAC 230

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           A  VA            V V + GG L ++W +   V + G A    +G L     +WI+
Sbjct: 231 AVAVAWAARVGGTPPSEVLVDLPGGRLTVDWRET-TVILRGPAVLVSDGVLRP---EWIR 286

Query: 289 KNED 292
           +   
Sbjct: 287 QATG 290


>gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 259

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 122/294 (41%), Gaps = 56/294 (19%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+ +GN  + ++         S     LS        D ++LI   + A  D  +
Sbjct: 1   MRFTKMQALGNDYIYVNAMEEKIENPSVLAQKLSDRHFGVGGDGLILIDFSEKA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD---GSISVD 119
           R+ N DG+E + CGNG+RCV +++     +K K+   ET  GI+  K  +     +I  D
Sbjct: 59  RMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILAD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+P +  +   +    ++   D                  SMGNPH + +V DD     
Sbjct: 119 MGQPSIGEENKKIVMGEEEYTADYI----------------SMGNPHLVVYV-DDPKRIQ 161

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-----------ACGSA 228
           +  +           E VN+    V +   + +R  ERG G T            +C   
Sbjct: 162 MKEWQEY--------EKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSC--- 210

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                         +  V V+M GG L +EW  + NH+F  GEAK  +EG++DI
Sbjct: 211 --------MKKQYVDNYVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256


>gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
 gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
          Length = 424

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/294 (23%), Positives = 110/294 (37%), Gaps = 24/294 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           + M  F K  G  N  +++        +T   +  L+        D ++ I   + A+ D
Sbjct: 140 TVMTRFTKGHGTENDFVLVPDPEGTLELTPAQVQRLADRRAGIGGDGVIRIVPTRHATED 199

Query: 62  ----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109
                      F+   N DGS  + CGNG R    FL     +   +F   T  GI   +
Sbjct: 200 SVRAQAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVR 259

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +G  +VD+G      +       FD M R R       H          +GNPHA+ 
Sbjct: 260 VVPEG-FAVDLGPWRYGDEQGARRDGFDIMVRPR-------HGKPVPALTFDLGNPHAVV 311

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            + D +   +L          P    G+N+   +      + +R  ERGVG T +CG+ A
Sbjct: 312 MLPDGIELENLDLTAPP-DVQPAQPNGINVEFVKAVGPAHIAMRVHERGVGETRSCGTGA 370

Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+ +A+             V + GG L +     N V + G A+   +G + +
Sbjct: 371 AAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424


>gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 328

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 87/319 (27%), Positives = 141/319 (44%), Gaps = 37/319 (11%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDASVDA 62
           K+ G  N   ++D     + +T + +  L+   TD  T      D I+ + +     V  
Sbjct: 6   KVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASHPGVLG 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +R+IN DGSE   CGNG+R V R+L  +     F  ET+   L  ++  D +     G 
Sbjct: 66  KMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETMYADLAVRQADDFAE----GV 121

Query: 123 PILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV-EDDL 175
           P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F+ E+DL
Sbjct: 122 PAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKEEDL 181

Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               L   G  L  ++P FS+GVN++   +     L +RT+ERGVG T ACG+   AS +
Sbjct: 182 ESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSASSL 241

Query: 235 ASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE----------WEG 277
           A       L    + +SV   GG +    H  +H   + + G A +             G
Sbjct: 242 AFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPEDQLHSG 301

Query: 278 KLDIKTGKWIKKNEDDEAY 296
           ++ ++  K  K+  +  AY
Sbjct: 302 QVKLEAVK-TKETGEQAAY 319


>gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 279

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA-F 63
           + F +  G+GN  LV   R     +++  I  +         D +++     +   D   
Sbjct: 1   MIFHRYHGLGNDYLVCHHRVAAL-LSNQQIRRICDRHYGIGSDGLLI----DNDDADIPS 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR-DGSISVDM 120
           +RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +  +       + VDM
Sbjct: 56  LRIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGGHVRCEVTDGAHQVIVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       +P +   D+        G  N     +  +VSMGNPH +  V D L    +
Sbjct: 116 GQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRV-DKLDLDLV 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+ +    +F +  N+  A+V    ++ +  WERG G T A GS++CA+  A   L 
Sbjct: 171 KQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKLG 230

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
             +  V+V+M GG L I +  +  V M G  +K  
Sbjct: 231 LVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQKIA 265


>gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
 gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
          Length = 335

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 26/298 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-------DNTHFDQIMLIHDFQ 56
            M    K+ G  N   ++D       +T D +  L+              D ++++    
Sbjct: 1   MMTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLARQLTDPQDGLLGGADGLLVVDRPT 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++  +   
Sbjct: 61  RPGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQAGE--- 117

Query: 117 SVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFF 170
            +  G P    ++ P+     A  FD +  DR    PV  L        +++ NPH I F
Sbjct: 118 -LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISF 176

Query: 171 V-EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           V ++ +    L   G+ L   +P FS+GVN++ A++   + L +RT+ERGVG T ACG+ 
Sbjct: 177 VNQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFTNACGTG 236

Query: 229 ACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
             A+ +A   LH      + AV+V   GG +    H  +H   + + G A    + ++
Sbjct: 237 MSATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRYWIELIGNATFTHQLEI 294


>gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
 gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
          Length = 279

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 109/280 (38%), Gaps = 26/280 (9%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM+G GN  +VID R      +++   A        +   D I+ +            
Sbjct: 11  FYKMQGSGNDFIVIDNRAKTISPEDMPRWAKTLCPHAFSIGADGIIFLEIDDSGQAATRW 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKE-NRDGSISVDMGE 122
              N DGS  + CGNG RC         M        T  G + A+     G + V +  
Sbjct: 71  HFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHLMLTDAGTVHAQVFPEAGEVDVQLTP 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                + + L  + D  DR                   + G PHA+  V  D+   D+  
Sbjct: 131 A----RDMALNFTLDLDDR------------TFAAHFANTGVPHAVI-VTPDVKSIDVKG 173

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH 240
            G  +  H  F   G N +  +V S   L LRT+ERGV   T ACG+ A ASV  +  L 
Sbjct: 174 LGAKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGTGAAASVAVAHALG 233

Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
                  V   GG  L I  H ++ +F+ G+A+  ++G+ 
Sbjct: 234 LCESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272


>gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 281

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 14/277 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGSI-SVDMGEPI 124
            DGSE +  GNG+R   R+L     +K + +   T  G  LV   +  GS   VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AV+V M GG L IE+  +  +FMTG     + GK+ +
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITV 275


>gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
 gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
          Length = 284

 Score =  214 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 111/299 (37%), Gaps = 46/299 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD----- 61
           F K  G GN  +V+       +++   I  L         D ++ +   + A++D     
Sbjct: 6   FTKGHGTGNDFVVLADPDGELDLSDAQIAVLCDRHFGIGADGLLRV--VRSAAIDEGAEA 63

Query: 62  ------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENR 112
                  F+   N DGS+ + CGNG R   R+L+              T  G+     + 
Sbjct: 64  AASGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLTRSE 123

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G   VD+G   ++                   +        R    + +GNPH +  V 
Sbjct: 124 RG-YEVDLGAFAIEATD--------------TLVRAKGLPVARPGVGIDVGNPHVVVAVA 168

Query: 173 DD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAA 224
            D  L   DL ++  +L   P    G N+               ++ LR +ERGVG T +
Sbjct: 169 SDAELEALDL-TYQPVLDPAPR--HGANVEFVVPADPLVQEGVGAIRLRVFERGVGETLS 225

Query: 225 CGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CG+   A+ +A      +      +V   GG L +    + HVF++G A   + G++ +
Sbjct: 226 CGTGVAAAALAVRHWAGSAAPDVWTVDTPGGTLGVRVA-DGHVFLSGPASLVFTGEVTL 283


>gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 266

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 30/281 (10%)

Query: 8   FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F+K  G GN  ++ID R     D   S              D ++L+     A  D  +R
Sbjct: 5   FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I N DG E + CGNG+RC+V+F     +++K +T +T+  +L A    D SI++ M +P 
Sbjct: 63  IFNADGYETEMCGNGIRCLVKFAQEIGIQKKHYTIQTMHSLLEAFPFGD-SITISMTDPA 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                      +D                L     V  G PHA+ FV D+L      +  
Sbjct: 122 --------EIEWDTQIEV--------DQTLLTVHWVDTGVPHAVIFV-DELEEARWMTLA 164

Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
             +  HP F  +GVN++ A++   E + LRT+ERGV   T ACG+ A A+ +A+  +   
Sbjct: 165 PKIRAHPHFSPKGVNVNFAQIK-KEEISLRTYERGVEQETLACGTGATAAAIAAAKIQGI 223

Query: 243 NRAVSVKMLGGG-LLIEWHDNN---HVFMTGEAKKEWEGKL 279
           +  VS+K   G  L I++       +V +TG A   ++G L
Sbjct: 224 SSPVSIKTRSGDNLEIQFEKTTKFRNVRLTGPAICTFKGVL 264


>gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
 gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
          Length = 285

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 124/266 (46%), Gaps = 10/266 (3%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G+GN  LV D       +  + +  L  D N       ++      +    +RI N 
Sbjct: 7   KYHGLGNDYLVFDPNKNEMELNEENVRLLC-DRNYGIGAEGILEGPVFETEQMGVRIWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA-KENRDGS-ISVDMGEPIL 125
           DGS+ +  GNG R   ++L     +++++F F+T  G +     N DGS I + +G+   
Sbjct: 66  DGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVGKASF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  ++ ++  + +   GN
Sbjct: 126 WSDEIPVTGERREVVDEDMVFG----RNLYPTTCVSVGNPHCVIPMK-EVSKHLVCKIGN 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  + +V   E++ +  +ERGVG T A GS+ACA+  A+  L  TN  
Sbjct: 181 HSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYKLGLTNPG 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEA 271
           V+V M GG L +E  ++  +F+TGE 
Sbjct: 241 VTVHMPGGELQVEIQEDWEIFVTGEV 266


>gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
 gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
          Length = 259

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 40/287 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             ++F K +  GN  ++I+       +    I  L   +     D ++LI   ++   D 
Sbjct: 1   MKINFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +++  N DG E   CGNG RC V F      + + +  F++I G   A   +   +S++M
Sbjct: 59  YMKYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKSIDGYHYASI-KQNIVSLNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
               L            K+  +  +I              + G+PH I F ++ + + ++
Sbjct: 118 KNVEL-----------VKVYPEHIYI--------------NTGSPHHILF-KEKINNINV 151

Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G  +         GVN++  ++ +   L++RT+ERGV   T +CG+   AS +A+  
Sbjct: 152 YKEGKKIRFNQKYIKTGVNVNFVKI-NKNILNVRTYERGVENETFSCGTGVTASAIAAYH 210

Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLD 280
           + K     + VK LGG L +++         +F+ GE    ++G ++
Sbjct: 211 IKKILYNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257


>gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
 gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
          Length = 258

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 38/282 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++ID R         +              D ++L+ +  D +VD  + 
Sbjct: 5   FYKYQGTGNDFVMIDNRSKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFKMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG++   CGNG RC+V F     M  K   F  I G+  A    +G +++ M    
Sbjct: 63  YFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATIT-NGVVNLKMNNV- 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                            D   + P       + F +  G+PH +  V+ DL  + +   G
Sbjct: 121 -----------------DEIVVKP-------SSFFLDTGSPHHVQLVK-DLGSFQVFEEG 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +       EG N++    T   +  +RT+ERGV   T +CG+   A  +A     K +
Sbjct: 156 KKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIAMHKAKKVD 215

Query: 244 RAV-SVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKLD 280
             V  +   GG L +    E++  ++V + G AK+ ++G++ 
Sbjct: 216 SNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEMS 257


>gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 281

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 14/277 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD--GSISVDMGEPI 124
            DGSE +  GNG+R   R+L     +K + +   T  G  +     D    + VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AV+V M GG L IE+  +  +FMTG     + GK+ +
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITV 275


>gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
 gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
          Length = 329

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 28/317 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L   +++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279
            A  +    L        ++V   GG + +    +    +   + G A    +G +    
Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEN 297

Query: 280 DIKTGKWIKKNEDDEAY 296
           DI T    +   +   Y
Sbjct: 298 DIVTELTNEATAEQAQY 314


>gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459]
 gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 329

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 24/295 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
            + F K+ G  N   ++D    H    SD   A     L    ++    D I+ +    +
Sbjct: 3   TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVTKSSE 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + S
Sbjct: 63  VGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATS 118

Query: 118 VDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
           +    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279
           A  +    L        ++V   GG + +    +    +   + G A    +G +
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 293


>gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
 gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
          Length = 333

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/311 (25%), Positives = 138/311 (44%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D     + +  + + +         +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D    
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +   R     V  L+    F  +++ NPH I FV
Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFV 176

Query: 172 E-DDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             ++L    L   G  L + +P FS+GVN++   +     L ++T+ERGVG T ACG+  
Sbjct: 177 SMEELNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIK 282
            A+ +A    H      N  +SV   GG +  I   D+ +  + + G A   +   + ++
Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVE 294

Query: 283 TGKWIKKNEDD 293
                ++N D+
Sbjct: 295 ESTIHQENLDE 305


>gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
 gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
          Length = 286

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 115/279 (41%), Gaps = 14/279 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +    +  L   +     D ++        +    + + N
Sbjct: 7   KYHGLGNDYLVFDPNKNKLELNPHNVALLCNRNFGVGADGVL--EGPVLENDRISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDG-SISVDMGEPI 124
            DGS  +  GNG+R   ++L     +++K F   T  G + +   N +G  +   MG+  
Sbjct: 65  PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKVS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  + D++    +   G
Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYPVT----CLSIGNPHCVILM-DEISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            + V+M GG + +E  ++  V +TG+      G + + +
Sbjct: 240 KMLVQMPGGTMELEIEEDGTVLLTGDVGFV--GTMKLGS 276


>gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS]
 gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS]
          Length = 300

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 20/261 (7%)

Query: 36  NALSTDDNT-HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94
                       D I+   +  +  VD  +R+ N DGSE + CGNG+RC+ RF   ++ +
Sbjct: 12  KIFCDRAGILGADGILFFQNSDN--VDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQ 69

Query: 95  KSFTFETIRGILVAKENRD-----GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
                ET++G+      ++      +   ++    L+ K IP+   F+ + +        
Sbjct: 70  NLVFIETLKGVSRVVNEKNIHPGVATYKAELNTISLNTKDIPINVHFESLIKQPLSTLSN 129

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLE 208
              F      VSM NPH +  V D++   +L   G        +F  GVN++  +V    
Sbjct: 130 KLTFT----AVSMPNPHIVAMV-DNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEA 184

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN--- 263
           ++ +RT+ERGVGLT +CGS   ++ + +  L +   ++ + V   GG +  E   NN   
Sbjct: 185 AIYVRTYERGVGLTNSCGSGMSSASLVACLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHH 244

Query: 264 -HVFMTGEAKKEWEGKLDIKT 283
             VF++G A   ++  +  ++
Sbjct: 245 YSVFLSGNATFIFKNTITYES 265


>gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
 gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
          Length = 257

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 42/284 (14%)

Query: 8   FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +  GN  ++ID R  G   N +S   N          D ++L+ +  D   D  + 
Sbjct: 5   FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62

Query: 66  IINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
             N DG     CGNG RC     +FL   +   +  F    G+  A+ + + S+S+ M +
Sbjct: 63  YFNSDGRPGSMCGNGGRCITAFAKFL--GIVGDTCRFVASDGLHEARISGE-SVSLRMAD 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                  +G + H   +N   ++ G+PH +  V   L  YD+  
Sbjct: 120 -----------------------VGEIRHK--KNYSFLNTGSPHHVQEVSG-LEAYDVDR 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  L        G N++   +     L +RT+ERGV   T +CG+   A+ +A     K
Sbjct: 154 EGKRLRYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGK 213

Query: 242 -TNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
              +   ++  GG L + +  +      +++TG A+  ++G L 
Sbjct: 214 HPEQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTLS 257


>gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988]
          Length = 329

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 28/317 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         SDA  A     L    ++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279
            A  +    L        ++V   GG + +    +    +   + G A    +G +    
Sbjct: 238 SACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEN 297

Query: 280 DIKTGKWIKKNEDDEAY 296
           DI T    +   +   Y
Sbjct: 298 DIVTELTNEATAEQAQY 314


>gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 285

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 15/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   +  G+GN  LV D       +       L   +     D I+             +
Sbjct: 3   ITLERYHGLGNDYLVYDPNKNELELNKANAEMLCNRNMGLGSDGIL--EGPFIGEKHMSL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDM 120
           RI N DGS  +  GNG+R   ++L     +++K++   T  G++     N DGS + + M
Sbjct: 61  RIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRISM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       +P+     ++  +    G      L     VS+GNPH +  +  ++    +
Sbjct: 121 GKLSFWSDEVPVTGERREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISQPLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              GN       F E +N  I +V    ++ + T+ERG G T A G+ ACA+   +  L 
Sbjct: 176 CKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVAHKLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            T   V V M GG L +E  +N  V+MTGE     +  +D+ + ++++K
Sbjct: 236 MTGNKVVVHMPGGELQVEIDENWEVYMTGEVFYVAK--IDL-SNEFVEK 281


>gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
 gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
          Length = 292

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 117/310 (37%), Gaps = 52/310 (16%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD- 61
           + ++F K +G GN  ++         +T   + A+         D I+     + +++D 
Sbjct: 2   ATLNFTKGQGTGNDFVLFSDPEGQLELTPQQVAAICDRRFGVGADGIL--RAVRSSNIDV 59

Query: 62  ------------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104
                        F+   N DG+  + CGNG+R    +L            +    T  G
Sbjct: 60  GAAALAEDADAEWFMDYRNADGTAAEMCGNGIRVFAHYLAENGFVDFEPGDTLPVGTRSG 119

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +   + N  G    DMG   LD    PL R+ +                 R    +++GN
Sbjct: 120 VRDVQRNMAG-YQADMGRWSLDGGE-PLVRAKE-------------LDVARPGLGINVGN 164

Query: 165 PHAIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWE 216
           PH +  + D+  L H DL     ++   P+   G N+               S+ +R  E
Sbjct: 165 PHVVVALADESELDHVDLNYI-PVI--DPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHE 221

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE---WHDNNHVFMTGEA 271
           RG G T +CG+ A A+ +A              V + GG +++      D  HV ++G A
Sbjct: 222 RGSGETLSCGTGAVAAALAIRHYAGAGAPNQWRVAVPGGTVVVRMFPTEDGEHVSLSGPA 281

Query: 272 KKEWEGKLDI 281
           +  + G L++
Sbjct: 282 ELVYTGSLEL 291


>gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 292

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 12/278 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G+GN   V D       +T + +  +  D N       ++          ++++ N 
Sbjct: 8   KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKIYVKVWNP 66

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125
           DGSE +  GNG R   ++L     +++K  TF T+ G +     N DGS +    G+   
Sbjct: 67  DGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLSF 126

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 127 WSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 181

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  + +V   E++ +  +ERGVG T A GS ACA+   +  L  TN  
Sbjct: 182 YAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNPG 241

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           V+V M GG L +E  D+  VF TGE      GK+ + +
Sbjct: 242 VTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSS 277


>gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 171

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 91/178 (51%), Gaps = 9/178 (5%)

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +V     D  I V+MGEPI +   IP  A  F+K    R  I  V          VSMGN
Sbjct: 1   MVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTV------LCGAVSMGN 54

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH +  V DD+   ++   G+LL  H  F E VN    ++ + E + LR +ERG G T A
Sbjct: 55  PHCVVQV-DDIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQA 113

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           CGS ACA+V         N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 114 CGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 171


>gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161]
 gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
 gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
          Length = 329

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 28/317 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-----HDNITSDAINALSTDDNT--HFDQIMLIHDFQ 56
           + + F K+ G  N   ++D          D   +D    L    ++    D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+    + 
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----AT 117

Query: 117 SVDMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           S+    P    ++ P+  + +     +  ++     +  L     F  VS+ NPH I FV
Sbjct: 118 SLGFDIPTYQVEISPVKFASETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFV 177

Query: 172 EDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +   D      + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL---- 279
            A  +    L        ++V   GG + +    +    +   + G A    +G +    
Sbjct: 238 SACSLIKKMLDHDTFETPLNVYNDGGRVQVTAKKDIAGEISLQLIGNATFVSKGSVRYEN 297

Query: 280 DIKTGKWIKKNEDDEAY 296
           D+ T    +   +   Y
Sbjct: 298 DVVTELTNEATAEQAQY 314


>gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
 gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
          Length = 289

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 23/284 (8%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDN--------THFDQIMLI-HDFQDASV 60
           K  G GN  +V+D      +  + A    + +             D ++ +  + + +  
Sbjct: 12  KYHGTGNDFIVVDADESVPDRPAFASAHCNRESGIDGDGSERRGADGVLFLALEGRYSPP 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + ++  DGS    CGNG RC   +   R        +T  G   A    D  ++++M
Sbjct: 72  RVVMTLVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVEDD-RVTIEM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +PLAR  + ++ +   +             ++ G PHAI FV DD+    L
Sbjct: 131 GAPSFRPRDVPLAREEELVEEEIEGL---------TVTALNTGVPHAIAFV-DDVDAVAL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            S    +    +F +G N+++A      S   RT+ERGV G T +CG+ A A V A+  +
Sbjct: 181 ESVAPAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRV 240

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +  V+V   GG L I   D+    +TG A+ E+E +LD+
Sbjct: 241 GLVDGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284


>gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 314

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 111/306 (36%), Gaps = 37/306 (12%)

Query: 4   SMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ------ 56
           S + F+K  G GN  +++ D  G H     +             D ++     +      
Sbjct: 17  SGLRFSKGHGTGNDFVLVADPEGAHSIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEGR 76

Query: 57  -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGIL 106
                    + F+   N DGS  + CGNG+R  V FL +          + T  T  G+ 
Sbjct: 77  ELLVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGVK 136

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
                 +G  +VDMG     +     A++ D +      +        R    VSMGNPH
Sbjct: 137 TVVRTGEG-YAVDMGPWEFIFPGEATAKAMDSL------VTAEGLEVPRPALSVSMGNPH 189

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220
            +  +  +L               P+ + G N+     +         S+ +R  ERGVG
Sbjct: 190 TVVALA-ELSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVHERGVG 248

Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN----NHVFMTGEAKKE 274
            T +CG+ ACA+ VA              + + GG + +++        HV ++G A   
Sbjct: 249 ETQSCGTGACAAAVAIRHWAGAEAPDSWRIHVPGGEVGVKFFAGPGGHEHVELSGPAVIV 308

Query: 275 WEGKLD 280
             G L 
Sbjct: 309 ATGTLS 314


>gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 286

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 113/277 (40%), Gaps = 14/277 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +    +  +   +     D ++       +     + + N
Sbjct: 7   KYHGLGNDYLVYDPNKNEMKLNPSNVQLMCNRNFGVGADGVL--EGPVISEDRISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDG-SISVDMGEPI 124
            DGS  +  GNG+R   ++L     +++K FT  +  G   +   N +G  +   MG   
Sbjct: 65  PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRAS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  + D++    +   G
Sbjct: 125 FWSSDVPVEGPRREIINETMVFGRIPYPVT----CLSVGNPHCVILM-DEISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 KYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + V+M GG L IE  ++  V MTG+      G + +
Sbjct: 240 KMVVQMPGGTLEIEIDEDGVVHMTGDVGYV--GTMKL 274


>gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 285

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 103/293 (35%), Gaps = 33/293 (11%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDASV---- 60
            FAK  G  N  +++       ++   A+  L         D I+  +H           
Sbjct: 9   PFAKGHGAENDFILLPDPHGLLDLGPGAVRRLCHRRTGIGADGILRAVHTTAVPEAAAMA 68

Query: 61  ---DAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENR--- 112
                F+   N DG+E Q CGNG+R   R+L  T           T  G+      R   
Sbjct: 69  ADAVWFMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRT 128

Query: 113 --DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              G ++V MG P L                   HI             V MGNPHA+  
Sbjct: 129 RFHGPVTVQMGRPRLPGPD---------------HITVTAGTRTWPALHVDMGNPHAVAL 173

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+D  +   L +    +     +  G  +          L LR  ERG G T +CG+ AC
Sbjct: 174 VDDLTHPGPLTT-PPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGAC 232

Query: 231 ASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A+V A+            V   GG L +  H +  + +TG A+    G + + 
Sbjct: 233 AAVAAATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285


>gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 281

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 14/277 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG-ILVAKENRDGSI-SVDMGEPI 124
            DGSE +  GNG+R   R+L     +K + +   T  G  LV   +  GS   VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFF----CDNFYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AV+V M GG L IE+  +  +FMTG     + GK+ +
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGSV--VYIGKITV 275


>gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 277

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 104/285 (36%), Gaps = 26/285 (9%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------LIHDFQDAS 59
           +FAK  G  N  +++  R     ++   +  L         D ++       +  +    
Sbjct: 5   EFAKGHGTMNDFVLLKDRTNSTELSPQDVRYLCDRRAGIGGDGVIRAVWAKYMPSWTGDP 64

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
              F+   N DGS  + CGNG+R    FL              T  G     E  D    
Sbjct: 65  NMWFMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFR 124

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             +G   +  +  P   S D ++ +                 V +GNPHA+ F+  D+  
Sbjct: 125 AGIGHVQVASQ--PTHVSLDGVEYE--------------ATTVDVGNPHAVVFLPADVDL 168

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L           ++  G N+   RV S  SL +R +ERG G T +CG+   A+  A G
Sbjct: 169 ESLDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAAAQG 228

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                     V + GG L +E  D++   +TG A     G + + 
Sbjct: 229 ARLGEQGRFGVDVPGGHLEVE-LDDSMAHLTGPAVIVAHGSVVLP 272


>gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae]
          Length = 180

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 9/186 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF  L     ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +  ++P    F     ++ +I       +    VVSMGNPH +  V DD+    + 
Sbjct: 121 EPNFEPSVVP----FRANKAEKTYIMRAAEQTVLCG-VVSMGNPHCVIQV-DDVETAAVE 174

Query: 182 SFGNLL 187
           + G +L
Sbjct: 175 TLGPVL 180


>gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 291

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 120/278 (43%), Gaps = 12/278 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K  G+GN   V D       +T + +  +  D N       ++          ++++ N 
Sbjct: 7   KYHGLGNDYFVFDPNKNELKLTKENVRMIC-DRNFGMGSDGILEGPIFQEDKIYVKVWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK-ENRDGS-ISVDMGEPIL 125
           DGSE +  GNG R   ++L     +++K  TF T+ G +     N DGS +    G+   
Sbjct: 66  DGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLSF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 126 WSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  + +V   E++ +  +ERGVG T A GS ACA+   +  L  TN  
Sbjct: 181 YAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNPG 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           V+V M GG L +E  D+  VF TGE      GK+ +  
Sbjct: 241 VTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSN 276


>gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
          Length = 329

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 32/293 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT-------HFDQIMLIHDFQD 57
           M +  K+ G  N   ++D       +T D + AL+    +         D +++++    
Sbjct: 1   MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R   + F  +T+   L  ++  D    
Sbjct: 61  EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           +  G P    ++ P+     A  +D +  DR     V  L     F  +++ NPH I FV
Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASFGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +++         G L      ++P FS+GVN++   +     + ++T+ERGVG T ACG+
Sbjct: 177 DEN----GFKELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGT 232

Query: 228 AACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273
              A+ +A   +H       + ++V   GG +    H  NH   + + G A  
Sbjct: 233 GMSATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRYWIELIGNATF 285


>gi|332663347|ref|YP_004446135.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332161|gb|AEE49262.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100]
          Length = 262

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 42/287 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + F K +G GN  +++D R     +    + +  L         D ++L+ +      D 
Sbjct: 4   IPFYKYQGAGNDFIMVDQRDNQWINREDRELVEKLCHRRFGIGADGLILLQNH--PGFDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RC V F     +      F  + G   A  N    + + M 
Sbjct: 62  EMIYFNADGREGSMCGNGGRCTVAFARQLGVIGDRCHFLAVDGPHDANINNPEWVELKM- 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                                   I         N + ++ G+PH I FV D++   D+ 
Sbjct: 121 ------------------------IDVTQVEEGSNFYYLNTGSPHYIAFV-DNVDQIDVV 155

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  +  F +EG N++  +  +   L + T+ERGV   T ACG+   A+ +A    
Sbjct: 156 QEGRAVRYNARFRAEGTNVNFTQ-LTANGLKVATYERGVEDETLACGTGVTAAALAYHLK 214

Query: 240 HKTNR---AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
               +    V +++ GG + I +       + V++ G AK  + G++
Sbjct: 215 RGGPKGAFEVPIQVKGGDMAIRFEATAQGFSDVWLCGPAKMVFAGEI 261


>gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
 gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
          Length = 333

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 26/291 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T   + + +       +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D    
Sbjct: 61  PGSVAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHED---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P+     A  FD +  +R     V  L+    F  +++ NPH I FV
Sbjct: 117 LAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISFV 176

Query: 172 E-DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             ++L    L   G  L    + FS+GVN++   +     L ++T+ERGVG T ACG+  
Sbjct: 177 SMEELNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273
            A+ +A    H      N  +SV   GG +  I   D+ +  V + G A  
Sbjct: 237 SATSLALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWVELIGNATF 287


>gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
 gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
          Length = 282

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 25/286 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57
           + + V F K+ G GN  + ID R    ++    D   ++         D ++ +    Q 
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115
              D      N DGS  + CGN  RC                F T  GI+ A  +   G 
Sbjct: 64  HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAVADVEAGY 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++  P             D        +             V+ G PHA+ F  D +
Sbjct: 124 AKVELTRPR------------DLAAGTTLELEGTPFTV----HFVNTGVPHAVVF-SDSV 166

Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              DL   G  L  HP F   G N + A +    ++ LRT+ERGV   T ACG+ A A+ 
Sbjct: 167 DGLDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATA 226

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  L  T+ +V V+  GG +L    ++  +F++G+A + + G++
Sbjct: 227 FIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272


>gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
 gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
          Length = 358

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 131/340 (38%), Gaps = 67/340 (19%)

Query: 9   AKMEGIGNKILVID-------MRGCHDNITSDAINALS-----TDDNTHFDQIMLIHD-F 55
           +KM G GN  +V                ++ + I+ ++            DQ++++ D  
Sbjct: 19  SKMHGAGNDFVVFHINAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCDQLIIVDDSP 78

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---------FETIRGIL 106
           ++   +  + +INCDG     CGNG+RC  ++L     +              ET  G++
Sbjct: 79  KNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQLIETKSGVI 138

Query: 107 VAKENRDGS-----------ISVDMGEPILDW---------KLIPLARSFDKMDRDRFHI 146
                 D             + V+MG+P L           + I    S    +     I
Sbjct: 139 KTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIPPKESFVITI 198

Query: 147 GPVNHLFLR--NPFVVSMGNPHAIFFVE--------------DDLYHYDLASFGNLLAKH 190
             +N  +       +VS G  HA+ F++              +DL   ++    + + +H
Sbjct: 199 DDLNLPYCNKIEIVLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSKINIKDLADKIQEH 258

Query: 191 PMFSEGV--NLSIAR--VTSL--ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243
           P+F +    N+      +       +  R  ERG G T ACG+ ACA  +A+  L+  N 
Sbjct: 259 PLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACAVGIAAYLLNYVND 318

Query: 244 -RAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
              +S +M GG LLI+W  + N  F TG A   +  +  +
Sbjct: 319 SSDISCEMPGGNLLIQWSSETNETFKTGPAVTLFNSEFTV 358


>gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
 gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
          Length = 272

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 104/285 (36%), Gaps = 32/285 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V+F K  G  N  +V+       ++T   + AL         D ++ +          F+
Sbjct: 3   VEFLKGHGTENDFVVLPDVDNELDLTEGRVRALCDRQRGLGADGVLRVVRLDLGP--WFM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+R   R+L          F   T  G      + DGS++V MG 
Sbjct: 61  DYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L  +   +    +                      V +GNPH     +  +   DL  
Sbjct: 121 VRLTGESTAVLGGVE-----------------FAGVGVDVGNPHLACVTDVPVAGLDLRD 163

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGSAACASVVAS 236
             +      +F  GVN+    V +         L +R  ERGVG T +CG+   A+V + 
Sbjct: 164 APS--HDAALFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVASW 221

Query: 237 GC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                +   A  V + GG + +   +     +TG A     G+LD
Sbjct: 222 LRGTGRATGAADVLVPGGRVRVTVDEGGS-TLTGPAVLLARGELD 265


>gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614]
 gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614]
          Length = 279

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 39/287 (13%)

Query: 7   DFAKMEGIGNKILVI-DMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
            F K  G  N  +++ D+ G  H ++++D + AL         D ++ +          F
Sbjct: 14  PFLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRVLRTDAG---WF 70

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120
           +   N DGS  + CGNG+R  VR L         +    +T  G+ V   + D  I+ DM
Sbjct: 71  MDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDGD-LITADM 129

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P +             +      +G V+         V MGNPHA+ FV+    H  +
Sbjct: 130 GRPRV-------------LGETVVGVGTVSWPARH----VDMGNPHAVAFVDSLDPHGPV 172

Query: 181 ASFGNLL----AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-----ACA 231
              G LL         F +G N+          + +R  ERG G T +CG+        A
Sbjct: 173 ---GPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAA 229

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           +V         + A  V + GG L + W  ++ V +TG A     G 
Sbjct: 230 AVADGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPAVIVARGT 276


>gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
 gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
          Length = 280

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 40/294 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDASVD-- 61
           ++F K  G GN  +++        +T D + A+         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLELTPDLVAAVCDRRQGIGGDGVLRVVRAARHPEGAAL 60

Query: 62  -----AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
                 F+   N DGS  + CGNG R  VR+L           +F   T  G++ A+   
Sbjct: 61  AGAAEWFMDYWNSDGSVAEMCGNGARVFVRYLLEAGLAVPSGAAFPVATRAGLVRARVEG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +   +V+M  P L    I                  V          V +GNPH +  V 
Sbjct: 121 EEL-AVEMRRPRLAGASI-----------------AVLDGLALPGTAVDVGNPHLVCPVP 162

Query: 173 DDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACG 226
             L    L          P+ F  GVN+               + +R +ERG   T +CG
Sbjct: 163 AGLELAALD-LNRAPEIDPVIFPTGVNVEFITPGDPTGGTDGYVRMRVYERGSAETRSCG 221

Query: 227 SAACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + ACA + V      +    V+V + GG L++        ++ G A     G++
Sbjct: 222 TGACAVAAVVLRDAGRDTGVVAVDVPGGRLVVT-QTAQACWLAGPAVLVATGEV 274


>gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius
           CECT 5713]
          Length = 325

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 37/322 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDA 58
           ++  K+ G GN   ++D     + +T + +  L+    D +T      D ++ +      
Sbjct: 1   MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQAG-HE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+    +  V
Sbjct: 60  GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV 119

Query: 119 DMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173
               P  D ++ P++         + +++     +  L     F  V++ NPH I FV+ 
Sbjct: 120 ----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFVDH 175

Query: 174 D-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T ACG+A  
Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKL--- 279
           AS +    LH       + ++V   GG +   +   +N   +M+  G A +  +  +   
Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKVNISQA 295

Query: 280 -----DIKTGKWIKKNEDDEAY 296
                +     W  +  +  AY
Sbjct: 296 DAINGNFDNFTW-NETGEQAAY 316


>gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3]
 gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3]
          Length = 302

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 123/297 (41%), Gaps = 45/297 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQ 56
           + F K  G GN  +++       ++T+D + AL         D ++ +            
Sbjct: 18  LRFVKGHGTGNDFVLLPDPDGDLDLTADLVRALCDRRTGIGGDGVLRVVLCAAVPEAAGL 77

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114
                 F+   N DGS  + CGNG R   R+L      +   F   T  G+ + +   DG
Sbjct: 78  AGRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDG 137

Query: 115 SISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            ++VDMG P I+D    P+  +                        VSMGNPHA+ F  D
Sbjct: 138 DVTVDMGPPRIIDGPGAPVTVADRDF----------------TATAVSMGNPHAVCFAGD 181

Query: 174 DLYHYDLASFGNL-LAKHPMF-----SEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                D+A    L L + P F      +GVN+ I  V     + +R +ERGVG TA+CG+
Sbjct: 182 ----LDVAGLRRLDLTRPPSFSPVDFPDGVNVEIV-VDRPAGVAMRVFERGVGETASCGT 236

Query: 228 AACASVVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ACA  VA               V V + GGGL++ W     V + G A+  ++G L
Sbjct: 237 GACAVAVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQPE-TVLLRGPAELVFDGVL 292


>gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56']
 gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56']
          Length = 265

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 43/292 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M+ ++V F K EG+GN  ++++       +T++A   L         D +++I   Q   
Sbjct: 1   MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQ--- 53

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGS--- 115
               +++ N DGS  + CGNG+RCV  +L SR   +K+ T  T  G    +  R G    
Sbjct: 54  --PRMQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG   +   L+  A   +                      V +GNPHA+ F     
Sbjct: 112 VLVGMGRARMGETLVVTALGAE-----------------HRFACVDVGNPHAVTFDPYTE 154

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----LDLRTWERGVGLTAACGSAAC 230
              D    G ++A  P   EG+N+   RV   E      +D+  WERGVG T ACG+ AC
Sbjct: 155 DAID--ELGPIVATTPA--EGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGAC 210

Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           A   A+    +      + V + GG L I     +  + M G A++ + G++
Sbjct: 211 AVAAAACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEV 262


>gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 325

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 37/322 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQDA 58
           ++  K+ G GN   ++D     + +T + +  L+    D +T      D ++ +      
Sbjct: 1   MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQAG-HE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T+   L  K+    +  V
Sbjct: 60  GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMHADLEVKKADKLAEKV 119

Query: 119 DMGEPILDWKLIPLARSFDK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173
               P  D ++ P++         + +++     +  L     F  V++ NPH I FV+ 
Sbjct: 120 ----PAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFVDH 175

Query: 174 D-LYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + L   +L    + L    +P+F +GVN+S   +     + +RT+ERGVG T ACG+A  
Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKL--- 279
           AS +    LH       + ++V   GG +   +   +N   +M+  G A +  +  +   
Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAKVNISQA 295

Query: 280 -----DIKTGKWIKKNEDDEAY 296
                +     W  +  +  AY
Sbjct: 296 DAINGNFDNFTW-NETGEQAAY 316


>gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1]
          Length = 282

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 25/286 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57
           + + V F K+ G GN  + ID R    ++    D   ++         D ++ +    Q 
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115
              D      N DGS  + CGN  RC                F T  GI+ A  +   G 
Sbjct: 64  HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPRHAFGTDAGIVHAVADVEAGY 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++  P             D        +             V+ G PHA+ F  D +
Sbjct: 124 AKVELTRPR------------DLAAGTTLELEGTPFTV----HFVNTGVPHAVVF-SDSV 166

Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              DL   G  L  HP F   G N + A +    ++ LRT+ERGV   T ACG+ A A+ 
Sbjct: 167 DGLDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATA 226

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  L  T+ +V V+  GG +L    ++  +F++G+A + + G++
Sbjct: 227 FIAHTLGLTDASVGVRTSGGEVLGIDIEDGSIFLSGKAVRVFSGEM 272


>gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 286

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 12/270 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +T   +  +   +     D I+             + + N
Sbjct: 7   KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGIL--EGPVLDGEQISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGIL-VAKENRDGS-ISVDMGEPI 124
            DGS  Q  GNG+R   ++L     +++K FT  +  G   +   N +G+ +   MG+  
Sbjct: 65  PDGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  + D++    +   G
Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYPVT----CLSIGNPHCVILM-DEISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            + V+M GG L +E      V MTG+    
Sbjct: 240 KMFVQMPGGTLELEIDGEGVVHMTGDVGYV 269


>gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 273

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 115/280 (41%), Gaps = 15/280 (5%)

Query: 5   MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+   K  G GN  ++ D  R  + +I    +           D  +L+           
Sbjct: 1   MIPVTKYHGCGNDFIITDWERVMNCDIEDFVVKVCDRHTGIGADGCILVKQHP-----LE 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE--NRDGSISVD 119
           +   N DGS    CGNG+RC  ++         + +  ET+ G             + +D
Sbjct: 56  MVFYNGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRID 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG    D K I +    + +   +  +G  +       +   M   H + FV  D + +D
Sbjct: 116 MGTWDDDPKSIQVEGQSEPIMDYKLTVGDTSVSV----YSFFMSTVHTVVFVS-DAFAFD 170

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
            +  G  +  HP++ E  N++   +  + +L + T+ERGVG+T ACG+ ACA+   +   
Sbjct: 171 YSDIGKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEK 230

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 + V +  G L IE  D  HV M G A++  +G+ 
Sbjct: 231 KGCASKLRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270


>gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
 gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
          Length = 261

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 40/291 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F K +  GN  ++I+       ++   I  +   +     D I+LI   +    D 
Sbjct: 1   MKIIFLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +++  N DG E   CGNG RC V F      +   +  F+TI G   A   ++  +S++M
Sbjct: 59  YMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTIDGSHYASITKN-IVSLNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                  K I L   + K                     ++ G+PH I F+++   + ++
Sbjct: 118 -------KNIELVEVYKK------------------HICINTGSPHHILFIDNK-NYINV 151

Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  +        +GVN++  +V     L++RT+ERGV   T +CG+   AS +A+  
Sbjct: 152 YNKGIKIRFNQKYIKKGVNVNFVKVK-KHILNVRTYERGVENETLSCGTGVTASAIAAYN 210

Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKTG 284
           + K     + V+ LGG L +++         +F+ GE    ++G L +   
Sbjct: 211 IKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLPAA 261


>gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a]
 gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a]
          Length = 368

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 123/336 (36%), Gaps = 75/336 (22%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH--------DFQ 56
           + F K  G GN  +V+        +T+D + AL         D ++ +            
Sbjct: 7   LRFVKGHGTGNDFVVLPDPDGDLELTADLVRALCDRRTGVGADGVLRVVLSAAVPEVAPL 66

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDG 114
             +   F+   N DGS  + CGNG R   R+L      +   FT  T  G+ + +    G
Sbjct: 67  AGAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAG 126

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
            ++VDMG P L         +    +RD   +G            VSMGNPHA+ F +D 
Sbjct: 127 DVTVDMGPPRLSAGA---GSAVTVAERDFTAVG------------VSMGNPHAVCFADDL 171

Query: 174 DLYHY-DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA---- 228
           D+    DL            F +GVN+ I  V     + +R +ERGVG TA+CG+     
Sbjct: 172 DVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGTGACAV 230

Query: 229 -------------------------------ACA----SVVASGCLHKTNRA------VS 247
                                          A A    S V+                V 
Sbjct: 231 AVAWAARQGLRPTPGSALASEPAPDAEPGQSAAAGVRPSAVSGVRHGAGAAPSAVEVEVE 290

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           V + GGGL++ W     V + G A+  ++G L   +
Sbjct: 291 VDVPGGGLVVVWRP-GTVLLRGPAELVYDGVLRPAS 325


>gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
 gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
          Length = 355

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 69/347 (19%)

Query: 3   SSMVDFAKMEGIGNKILVID------MRGCHDNITSDAI-----NALSTDDNTHFDQIML 51
           S  ++F KM G GN  +V +      + G    +T + I               FDQ+++
Sbjct: 10  SFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIV 69

Query: 52  IHD-FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-------------KRKSF 97
           I D   D +    + +INCDG+    CGNG+RC  +++                      
Sbjct: 70  IDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDI 129

Query: 98  --TFETIRGILVA----------KENRDGSISVDMGEPILDWKLIPLARSFDKMDRD--- 142
               ET  GI+            K+N    + V+MG P +   +  + R   K+  +   
Sbjct: 130 EQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSP 189

Query: 143 ------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY---------------HYDLA 181
                    IG      L   +V   GN   + F++ ++                  D  
Sbjct: 190 IESYMYTIDIGLPYCSKLECVYVTVGGNQ-CVVFIDRNIELGYLDSSYGDHTKFSTIDFK 248

Query: 182 SFGNLLAKH-PMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACASVVAS 236
              +++  +   F +  N+     +  + L+     R  ERG G T ACG+ AC   ++S
Sbjct: 249 EISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISS 308

Query: 237 GCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 N    ++V+M GG LLI+W+ NN +F TG A   ++ ++ I
Sbjct: 309 ILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI 355


>gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c]
 gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c]
          Length = 340

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 64/332 (19%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           V F K +G GN  +++        +T   + AL         D ++ +            
Sbjct: 22  VRFVKGQGTGNDFVIVPDPDGELELTPRLVRALCDRRFGIGADGVLRVVLTAAEPSAAGL 81

Query: 53  ---------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                                          F+   N DGS  + CGNG+R   R+L   
Sbjct: 82  GNSWAADLPDGRRAPAESRTARPAGAGGARWFMDYRNADGSIAEMCGNGLRVFGRYLVDA 141

Query: 92  MKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              ++      T  G+ +A    +G ++V+MG P +             +  +R  I   
Sbjct: 142 GYERAGLIPVATRAGVRLADVPNEGDVTVEMGPPTIGP-----------LGAERVSIAGR 190

Query: 150 NHLFLRNPFVVSMGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205
                     VSMGNPHA+ F +D    DL   DL     +      +  G N+ I  + 
Sbjct: 191 TFEATN----VSMGNPHAVCFADDLAEADLNALDLTRLPQV--SPAAYPTGANVEIV-IG 243

Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNN 263
           + +++ +R +ERGVG T +CG+ ACA  VA+           + V + GG + + W D++
Sbjct: 244 APDAVRMRVYERGVGETLSCGTGACAVAVAAATRAGRGPGTVIPVDVPGGRVTVLW-DSD 302

Query: 264 HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            V + G A    EG   +    W+   +   A
Sbjct: 303 QVRLRGPAVLVSEG---LLRSDWLAAAQAGSA 331


>gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 280

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 33/292 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M+ FAK  G GN  ++I+ +      D ++  A        +   D ++++   +  + D
Sbjct: 1   MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDM 120
            ++R+ N DGSE + CGNG RC+ R+   +   +   TFET  G + A  N     ++DM
Sbjct: 59  FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPP-WATIDM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVED--DLYH 177
           GE                +D      G +N      P+V   +G PH + F     D+  
Sbjct: 118 GE----------------IDVSNLKEGKINAFGKEIPYVAFYVGVPHCVLFFPGFRDIPR 161

Query: 178 YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
             L S    + +   +F EG N++ A   + + +   T+ERGV   T +CG+ + A  +A
Sbjct: 162 DSLLSLARHIRRKGAIFDEGANVNFAE-RNKDCIGAMTYERGVEDFTLSCGTGSIACCLA 220

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VF---MTGEAKKEWEGKLDIKT 283
           S  L  +  A+ VK  GG   +     +  VF   ++G+A    EG +  + 
Sbjct: 221 SHLLFGSPLAMKVKNPGGVNKVALRLTSEKVFEASLSGKALIVAEGLITEEA 272


>gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
 gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
          Length = 256

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 40/285 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G GN  ++ID R    N  T + I+ L         D ++LI +  D ++D  
Sbjct: 3   LNFYKYQGCGNDFVMIDNRSQTFNKDTINTISKLCDRHFGIGADGVILIEN--DLALDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DGS+   CGNG RC V F     + +    F    G   +K  ++  +S+ M  
Sbjct: 61  MVYYNPDGSQ-TFCGNGGRCAVSFAHFLGIIKNETNFTAFDGTHFSKI-KNNIVSLKM-- 116

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +D   I                       L     ++ G PH +  V  DL ++D+  
Sbjct: 117 --IDVSDI---------------------QILEQAVFLNTGTPHHVQVVT-DLSNFDVFR 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +      S G N++     +  +  +RT+E+GV   T ACG+   A  +A     K
Sbjct: 153 EGEKIRY-TYKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMHKTKK 211

Query: 242 TNRA-VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
           TN   +++ + GG L + + +      ++F+ G A   ++GK++I
Sbjct: 212 TNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256


>gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 283

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 105/293 (35%), Gaps = 38/293 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI--------HDFQ 56
           ++F K  G GN  +++        +T   + AL         D ++ +           Q
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGALELTPGLVAALCDRRRGLGADGVLRVVRAAKHPEGAGQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VR+L        +  + +  T  G++ A    
Sbjct: 61  AGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETGLAVPEGAALSVATRAGVVRALVAG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           + +ISV++  P +                                  V +GNPH +  + 
Sbjct: 121 E-AISVEVRRPRV-----------------YATSTAALGGLTLAGSAVDVGNPHLVCALP 162

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227
             L    L           +F  GVN+               + +R +ERG   T +CG+
Sbjct: 163 AGLELGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYERGSAETLSCGT 222

Query: 228 AACA-SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ACA + VA     +    V+V + GG L +   D+   ++ G A     G L
Sbjct: 223 GACAVAAVALHDAGRNTGTVAVDLPGGRLTVTMTDD-SCWLAGPALLVASGTL 274


>gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
 gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
          Length = 264

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 41/290 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    N      I  +         D +M + D      D  
Sbjct: 3   IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQD--KEGYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           +   N DG     CGNG RC+V F     +      F+ + G   AK + +G  +S+ M 
Sbjct: 61  MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKISAEGDWVSLQM- 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              +D   I                           +V++ G+PH +  VE DL H ++ 
Sbjct: 120 ---IDVAQINRDGE---------------------AYVLNTGSPHYVKLVE-DLKHKNVY 154

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G+ +  +  +  +G+N++     +     +RT+ERGV   T ACG+   A  +A    
Sbjct: 155 QEGHAIRNNATYRKKGININFVEPMAEGYF-VRTFERGVEDETYACGTGVTAVALAMAQH 213

Query: 240 HKTNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
           ++ +  ++  VK+LGG L I +  +     ++F+ G AK  +EGK+   T
Sbjct: 214 NQQSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKIGPLT 263


>gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21]
 gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21]
          Length = 263

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 42/285 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    +   T+              D +ML+   Q A  D  
Sbjct: 1   MKFFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR-DGSISVDMG 121
           +   N DG+    CGNG RC+V F     +  KS  F  + G   A  N     +S+ M 
Sbjct: 59  MVYYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATINDTADWVSLKM- 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                            +D +       +       FV++ G+PH +  V  DL + D+ 
Sbjct: 118 -----------------IDVEHIEKDGDD-------FVLNTGSPHYVKEVV-DLKNLDVF 152

Query: 182 SFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS--G 237
           + G  +  +  + + G+N++     +     +RT+ERGV   T ACG+   A  +A    
Sbjct: 153 AAGRAIRYNATYKQAGINVNFVEAVNDGY-QVRTYERGVEDETLACGTGVTAVALAMAWH 211

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEG 277
                  +  +K +GG L I +    +     +++ G AK  +EG
Sbjct: 212 HNRLGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256


>gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
 gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
          Length = 261

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 41/287 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID       +I  + +  +         D +M +    D   D  
Sbjct: 3   IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFLTSHPD--YDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDG-SISVDMG 121
           +   N DG     CGNG RC+V F     +  K   F  + G   AK + +G  + + M 
Sbjct: 61  MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEGNWVELQM- 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                          D + RD               +V++ G+PH +  +E+ L  YD+ 
Sbjct: 120 ------------IDIDTIGRD------------GEAYVLNTGSPHYVARMEN-LATYDVY 154

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV--ASG 237
             G  +  +  +  EG+N++       + L +RT+ERGV   T ACG+   A  +  A  
Sbjct: 155 HEGKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTAVALSMALH 213

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
                +    VK+LGG L +E+  N     +VF+ G A+K +EG+L+
Sbjct: 214 KQQSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260


>gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 276

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 125/281 (44%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM  +GN  ++++     +NI+   I  LS       FDQ++LI  F        I
Sbjct: 1   MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLSDRYTGIGFDQLILIEFFCKKYFYFKI 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGE 122
           +I N D SE   C NG+RCV  FL  +              G+      ++  I V +  
Sbjct: 61  KIFNSDSSESFQCINGIRCVFMFLKIKKLIKKNIAFIGNNLGLSKTLMTKNKLICVKIKP 120

Query: 123 PIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P     K I +   ++  ++    I           + V +GNPH I  +  ++ + + +
Sbjct: 121 PRFYIEKDILVNPKYNNKEKIILRIFKKK----ITCYFVFVGNPHCII-ISKNIEYNNFS 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                L K+ +F   +N+SI  +   + + L+ +ERG G T +CGSAA A+   +    K
Sbjct: 176 LLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAIYYKK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMT--GEAKKEWEGKLD 280
            N+ + V    G L + W    + FM+  G A   ++GK++
Sbjct: 236 LNKKIKVNFSRGNLYVYWEKIGN-FMSIIGPANHIYDGKIN 275


>gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
 gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
          Length = 268

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 111/288 (38%), Gaps = 32/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56
           + F K  G  N  +++        + +  +  +         D ++ +           Q
Sbjct: 1   MRFVKGHGTENDFVILPDPDGELELPAALVARVCDRRAGIGADGVLRVMRTKLSPEVADQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114
               + F+   N DG   + CGNG+R   R+L          F   T  G+   +    G
Sbjct: 61  AGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAETG 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P L             + R R  +    +  LR    V MGNPH    + D 
Sbjct: 121 DVTVDMGTPRL-------------LGRSRTTVAGQEYEGLR----VDMGNPHLACAIGDP 163

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL+           F  GVN+ +        + +R +ERG G T +CG+ A AS V
Sbjct: 164 VAQLDLSHQPAF--DPEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVASAV 221

Query: 235 ASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A+  L  +T    +V++LGG + +   +    ++ G A     G L +
Sbjct: 222 AAAHLAGETTGTWAVEVLGGTVTVTLDERTS-YLAGPAVLVASGDLSL 268


>gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
 gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
          Length = 259

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 40/288 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F K +  GN  ++I+       ++   I  +   +     D I+LI   +    D 
Sbjct: 1   MKIIFLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +++  N DG E   CGNG RC V F      +   +  F+TI G   A   ++  +S++M
Sbjct: 59  YMKYYNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFKTIDGSHYASITKN-IVSLNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                  K I L   + K                     ++ G+PH I F+++   + ++
Sbjct: 118 -------KNIELVEVYKK------------------HICINTGSPHHILFIDNK-NYINV 151

Query: 181 ASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  +        +GVN++  +V     L++RT+ERGV   T +CG+   AS +A+  
Sbjct: 152 YNQGIKIRFNQKYIKKGVNVNFVKVK-KHILNVRTYERGVENETLSCGTGVTASAIAAYN 210

Query: 239 LHK-TNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDI 281
           + K     + V+ LGG L +++         +F+ GE    ++G L +
Sbjct: 211 IKKLLYNKIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKL 258


>gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 291

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/292 (22%), Positives = 104/292 (35%), Gaps = 32/292 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           +  + F K  G  N  L++        +T   + AL         D ++L+         
Sbjct: 2   TRTLTFTKGHGTENDFLLVPDPDAELGLTPADVIALCDRQAGIGADGLLLVTRSAAHPDA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE- 110
                  + F+   N DG+  Q CGNG+R   R+L    R +  +    T  G+      
Sbjct: 62  ADMADEAEWFMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTVPIATRSGVRQVHIP 121

Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + DG  +V MG P                      I    +        V +GNPHA+
Sbjct: 122 GGDPDGHPTVAMGRPAFPGPD---------------GIKVTANGRTWPALHVDVGNPHAV 166

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             V+D     DL +    +     + EGV +          L LR  ERG G T +CG+ 
Sbjct: 167 VQVDDLADPGDLRT-PPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTG 225

Query: 229 ACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           A A+V A             +V + GG L ++   +  + ++G A     G 
Sbjct: 226 AVAAVAAVLHREPGVPTGRYTVDVAGGSLAVDVAPDGDMHLSGPAVLVATGT 277


>gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
 gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
          Length = 283

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 43/296 (14%)

Query: 10  KMEGIGNKILVI-DMRGC-----HDNITSDAINALSTDD-NTHFDQIMLI--------HD 54
           K  G  N  +++ D+ G       D   +  + AL         D I+ +         D
Sbjct: 7   KGHGTENDFVLLPDLDGSVHGSLSDEEMAARVRALCDRRAGIGGDGILRVIRTAAYTGAD 66

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRD 113
              +  + F+   N DG+  + CGNG R    +L  + +     TF T  G    +   D
Sbjct: 67  RPASDAEWFMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD 126

Query: 114 GSISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
              + D+G P +L    + +A  F                   +   V MGNPHA   VE
Sbjct: 127 -VWTADLGSPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVE 167

Query: 173 DDLYHYDLAS-FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
               H  +   + + +    ++  GVN+      +   L +R +ERG G T +CG+ ACA
Sbjct: 168 SIDPHGPVGDLYDSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACA 227

Query: 232 SVVASGCLHKT------NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +VA+            +    V + GG L + W  ++ V +TG A    EG   +
Sbjct: 228 VMVAAAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283


>gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
 gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
          Length = 272

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 34/289 (11%)

Query: 6   VDFA--KMEGIGNKILVI-DMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS- 59
           + F+  K  G  N  +++ D  G  H ++    + AL         D ++ +        
Sbjct: 1   MTFSWLKGHGTENDFVLLPDHDGTVHGDLDPTFVAALCHRRRGIGADGVLRVVRSAATGL 60

Query: 60  ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD 113
               + F+   N DGS  + CGNG+R     L           F   T  G      + D
Sbjct: 61  PSAAEWFMDYRNADGSTSEMCGNGIRVFALHLVQEGLVDPSGPFLVGTRDGDKQITVDGD 120

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++VDMG   +               R    +   +H  +     V  GNPHA+ FV+D
Sbjct: 121 -LVTVDMGVAEV---------------RGTTKVTVDDH--VWEAQDVRTGNPHAVAFVDD 162

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                 L +         ++ +GVN+   R    + + +R  ERG G T +CG+ ACA+ 
Sbjct: 163 LAEAGALTAQPEYDEV--VYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAA 220

Query: 234 VASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           VA G  H         V + GG + +    +  V + G A+    G+++
Sbjct: 221 VAHGLDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269


>gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
 gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
          Length = 281

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 103/279 (36%), Gaps = 23/279 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G  N  +++  R    ++T + + AL  D         +I    DA    F+   
Sbjct: 16  FLKGHGTENDFVLLPDRADELDLTENRVRALC-DRRAGLGGDGVIRVVPDADGGFFMDYR 74

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGS  Q CGNG R   R++            F T  G  VA     G +S++MG   L
Sbjct: 75  NADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPATL 134

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                            R  IG      +     V +GNPH +     D          +
Sbjct: 135 GVAS-------------RAAIGDAAFAGI----AVDVGNPHLVCLDIGDRSTLAALDLSH 177

Query: 186 LLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKTN 243
                P +F +GVN+          + +R  ERGVG T +CG+     +        +T 
Sbjct: 178 APEFDPQVFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGRTQ 237

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             V V + GG + ++        +TG A    +G+++ +
Sbjct: 238 GRVLVNVPGGQVTVDIAPGTS-MLTGPAVIVAQGRVEPQ 275


>gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 334

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++   +  L       D        D ++++
Sbjct: 3   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 59

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 60  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 119

Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           D      + SV++     D + + +  + D   +  ++      +  F      V++ NP
Sbjct: 120 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 175

Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H I FV+ D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T
Sbjct: 176 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 235

Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274
            ACG+A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 236 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 295


>gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
 gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
          Length = 332

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++   +  L       D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           D      + SV++     D + + +  + D   +  ++      +  F      V++ NP
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 173

Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H I FV+ D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T
Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233

Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274
            ACG+A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
 gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
          Length = 332

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 132/300 (44%), Gaps = 33/300 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++   +  L       D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           D      + SV++     D + + +  + D   +  ++      +  F      V++ NP
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNP 173

Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H I FV+ D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T
Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233

Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274
            ACG+A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 300

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/301 (22%), Positives = 107/301 (35%), Gaps = 45/301 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-------- 57
              K  G  N  +++        +    +  L+        D ++ +   +         
Sbjct: 5   QLVKGHGTANDFVLLHDPNGEHELDPARVRELADRRTGIGGDGVIRVIRSEALGEEAGDV 64

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENR 112
              A  + F+   N DGS  + CGNG+R    +L     ++ +SF   T  GI       
Sbjct: 65  AHGAGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHVTVIP 124

Query: 113 DG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           D          VDMG+    W+L     +FD        +        R    V MGNPH
Sbjct: 125 DPLGGDTPWYKVDMGK----WQLPGGGEAFDAT------VETTGVRVARPGLTVDMGNPH 174

Query: 167 AIFFVE--DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGV 219
            +  +   ++L    L      +   P    G N+    +         +L +R  ERGV
Sbjct: 175 TVVALAHAEELQAAKLHE-PPHVEPTP--PAGTNVEYIVIEPDNDPTTGTLRMRVHERGV 231

Query: 220 GLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           G T ACG+ ACAS +A+              +V   GG + IE      V ++G A   +
Sbjct: 232 GETYACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIEIT-GETVALSGPAVITY 290

Query: 276 E 276
           E
Sbjct: 291 E 291


>gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
          Length = 263

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 118/289 (40%), Gaps = 38/289 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             + F K +  GN  ++I+      ++    I  L   +     D ++LI   ++   D 
Sbjct: 1   MKIFFFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIKN--YDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +++  N DG E   CGNG RC V F      + +K+  F+TI G   A  N++  +S++M
Sbjct: 59  YMKYYNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINKN-IVSINM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                                       +      +   ++ G+PH I F++        
Sbjct: 118 TNVEF-----------------------LTVEVDSDSIFLNTGSPHHIIFIKKIENINRN 154

Query: 181 ASF-GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
            +  G  L     +   GVN++  ++ +     +RT+ERGV   T +CG+   ASV+A+ 
Sbjct: 155 INIKGRKLQSSKKYLKTGVNVNFVQI-NKHIFYVRTYERGVENETLSCGTGVTASVIAAY 213

Query: 238 CLHKTNRAVS-VKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
              K       VK  GG L +++         +F+ GE    ++G + I
Sbjct: 214 HKKKIFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262


>gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
 gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
          Length = 275

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 28/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----HDFQDASV 60
           ++F K  G  N  +++        +T   + AL         D ++ +       + ++ 
Sbjct: 4   IEFLKGHGTQNDFVLLPDPAGRLELTEARVAALCDRRRGLGADGVLRVVRAAELGEPSAG 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           + F+   N DGS  + CGNG+R   R+L          F   T  G      + D S++V
Sbjct: 64  EWFMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG   +    + +                       +   V +GNPH +  ++DD+   
Sbjct: 124 HMGPATITGTSVTVVAGRP-----------------FSGVAVDVGNPHLVSLLDDDVAGL 166

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL    +    H +F  GVNL         +L +R  ERGVG T ACG+   A+V A+  
Sbjct: 167 DLREQPDF--DHDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224

Query: 239 LHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           L  T+    +V + GG + +         ++G A+    G+LD
Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGAS-TLSGPAEIVARGELD 266


>gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 301

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 75/289 (25%), Positives = 114/289 (39%), Gaps = 22/289 (7%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIML-----IHD------ 54
           DF K E +GN  LVID      + T+D +  +         D ++      +        
Sbjct: 4   DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63

Query: 55  -FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111
                     +RI N DG+     GNG+R   R+L          FT  T  G    +  
Sbjct: 64  TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVRVL 123

Query: 112 R--DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G I + +G      + +        M R+   +   N         +S GNPH + 
Sbjct: 124 DRASGLIRLALGPMSSSSRDVGATGHDRPMLRETLRVDGENIEIT----CLSDGNPHCVV 179

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            V +++      + G  +A HP F   VN+   +V    ++    WERG G T A GS A
Sbjct: 180 -VRENVTPELAHALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWERGAGYTLASGSGA 238

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           CA+  A+  L  T   V+V+M GG L +E   +  V +TG A +   G+
Sbjct: 239 CAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQVATGR 287


>gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304]
 gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304]
          Length = 342

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 34/298 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTH----FDQIMLIHDFQD 57
           M+   K++G GN   ++D       +  + ++ L+       T      D I+ +     
Sbjct: 1   MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAVTASPT 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRG-ILVAKENRDGS 115
            S    I +IN DGS+   CGNG+R V R+L       +    +TI G   V+  N +  
Sbjct: 61  PS----IHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116

Query: 116 IS----VDMGEPILDWKLIPLAR-----SFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNP 165
           +        G P    ++ P++       F  + R+R     V  L     F  +S+ NP
Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLPFTNLGRNRLINCSVPELLPDLRFTALSVPNP 176

Query: 166 HAIFFV-EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           H + F+ +D +    L+S GN L + +P F  GVN++ A +    +L +RT+ERGVGLT 
Sbjct: 177 HVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGVGLTN 236

Query: 224 ACGSAACASVVASGC----LHKTNRAVSVKMLGGGL--LIEWHDNNHVF---MTGEAK 272
           ACG+   A+ +        + + N+ ++V   GG +   + + +    +   + G A 
Sbjct: 237 ACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVHYQEEEGTYTINLIGNAT 294


>gi|189502193|ref|YP_001957910.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497634|gb|ACE06181.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 42/289 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
             + F K  G GN  +++D     +       + I +L         D  + +   +  S
Sbjct: 1   MTIPFYKYHGTGNDFILVDNITNPNVTCPHDPELIKSLCHRKFGIGADGFIFLE--KSGS 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            D  +   N D S+   CGNG RC V       +      F  I G   A+   D  + +
Sbjct: 59  YDFEMIYYNSDASQS-LCGNGSRCAVHLASYLGIINNVADFLAIDGPHQARIQ-DNLVYL 116

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            +     D   I +                     + N + ++ G+PH +  V++ +   
Sbjct: 117 QLH----DVSTIQM---------------------MGNDYFLNTGSPHYVRLVQNLVET- 150

Query: 179 DLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+   G  +     F   G N++  ++ +   + + T+ERGV   T +CG+   A+ + +
Sbjct: 151 DVIELGKSINASQSFQNTGTNVNFVQLEANNQISVCTYERGVNDETLSCGTGVVAAALVA 210

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281
                T   V V   GG L I +  +N  F    + G A + ++GK+ I
Sbjct: 211 SQKGYT-SPVYVVTKGGELQISFCKHNTAFSNICLVGPATQVFQGKITI 258


>gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
 gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
          Length = 267

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 40/287 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  ++ID R      T + +            D +ML+        D  +
Sbjct: 3   IKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEP 123
           R  N DG E   CGNG RC+V +        ++  F    G    +    G + V M   
Sbjct: 61  RYFNSDGREASLCGNGSRCIVAYAHRLGLFLQTTRFLAADGEHQGEITLQG-VRVKMN-- 117

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                           D  R  + P       + F +  G+PH +  V D     D+ + 
Sbjct: 118 ----------------DVSRITVTP-------DYFFLDTGSPHYVKVVADAFQT-DVVTA 153

Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC-ASVVASGCLH 240
           G ++   P F   G N++    T    + + T+ERGV   T ACG+    A++ A+   H
Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPT-PACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212

Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLDIK 282
             +   +++  GG L + +    +NH   +++ G A+  + G+++  
Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIETP 259


>gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
 gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
          Length = 326

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 26/289 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQDA 58
           ++  K+ G  N+  ++D       +T   +     + TD         D ++L+ + +  
Sbjct: 3   LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113
           +    +R+IN DGSE   CGNG+R V R+L+ +  +     ET+   L  K+  +     
Sbjct: 63  TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            +  V++     +   +P     +  +D++   + P  H        V++ NPH I FV+
Sbjct: 123 QTFQVEISPVSFNVAKLPFNWKDETFIDQELPELAPGLHFST-----VAVPNPHLISFVD 177

Query: 173 DD-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
              +    L      L   +P F +GVN+S       + + +RT+ERGVG T ACG+A  
Sbjct: 178 HKTIKSSLLKELATYLNGANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFTNACGTAMA 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273
           AS +    L   +    + V   GG +   +   +N + +M   G A  
Sbjct: 238 ASSLMYVLLKDGRLEEKIQVTNPGGMVQTIVHQKENGNYWMDLIGNATF 286


>gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
 gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
          Length = 357

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 126/353 (35%), Gaps = 80/353 (22%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIML 51
           S  ++F KM+G GN  +V +                + I+               DQ+++
Sbjct: 11  SYRINFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGFTKKLSHRKLGIGCDQLII 70

Query: 52  IHD-FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRK 95
           I D   D +    + +INCDG+    CGNG+RC  +++                    + 
Sbjct: 71  IDDNPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDKI 130

Query: 96  SFTFETIRGILVA----------KENRDGSISVDMGE--------------PILDWKLIP 131
               ET  GI+            KE     + V+MG               P    K  P
Sbjct: 131 EQIIETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQSP 190

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-------------- 177
           L      +D        + +        VS+G    + F++ ++                
Sbjct: 191 LESYMYTIDI------GLPYCSKLECVYVSVGVNQCVVFIDRNIELGYLDSSYGDFSKFS 244

Query: 178 -YDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLD----LRTWERGVGLTAACGSAACA 231
             ++    +++  +   F +  N+     +  + L+     R  ERG G T ACG+ AC 
Sbjct: 245 MINIQEISDIIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGACG 304

Query: 232 SVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             VAS      N      V+M GG LLI+W  NN  +F TG A   ++ ++ I
Sbjct: 305 VAVASILKGYCNENTESIVEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQILI 357


>gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046]
          Length = 320

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   K+ G GN   + +       N  + A       ++   D ++++     A  DA +
Sbjct: 3   IQLTKVHGSGNTFYLYEALYDEQFNFVNIAKQLCHHSNDGGADGLLIVLPSSVA--DAKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-----GSISVD 119
           R+IN DGSE   CGNG+RCV R++  ++       ET+   L  K          + SV+
Sbjct: 61  RVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVKREASIFEQLPTYSVE 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-----EDD 174
           +     +   +P+     +  R          +       +S+ NPH I  V     E+ 
Sbjct: 121 ISPISFELVSLPMKVENRQQLRHEIIPAFSMDI---PFTAISVPNPHLIGIVDHKYMENT 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L+   LA++  L +++    +GVN+S  +  S + + +RT+ERGVG T ACG+A  AS +
Sbjct: 178 LHQEQLAAY--LNSENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGTAMTASAL 235

Query: 235 ASGCLHK-TNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
            +      TN  V+V   GG +  E     D+  + + G A    + + D++
Sbjct: 236 IASIEGFITNSKVTVYNPGGFVQCEVKNCGDSWELALIGNATVLGDYEYDLQ 287


>gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 332

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 131/300 (43%), Gaps = 33/300 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++   +  L       D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DG-----SISVDMGEPILDWKLIPLARSFD--KMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           D      + SV++     D + + +  + D   +  ++      +  F      V++ N 
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKF----SAVAVPNQ 173

Query: 166 HAIFFVEDD-LYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           H I FV+ D L   +L   G  +   K+ +F +GVN+S   V    S+ +RT+ERGVG T
Sbjct: 174 HLIAFVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFT 233

Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKE 274
            ACG+A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 234 NACGTAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 290

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 14/283 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
             V F K   +GN  LV D       +  + I  +         D I+            
Sbjct: 2   KKVTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILA--GPYLDQEKM 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA-KENRDGS-ISV 118
           +++I+N DGSEV   GNGM    ++L     +++ S ++ TI G       N +G+ + +
Sbjct: 60  YVKILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGTRVKI 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P      IP+     +M       G + ++       +S+GNPH + ++  ++   
Sbjct: 120 SMGRPSFWSDEIPVTGERREMVNQTMMFGKIPYVTT----CLSLGNPHCVIWMS-EISKD 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G        F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  
Sbjct: 175 QVCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALR 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L   +  + V M GG L +E  ++  V+M GE      G + +
Sbjct: 235 LGLADNNMYVHMPGGILEVEIKEDGTVYMVGEVGHV--GTITL 275


>gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2]
 gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2]
          Length = 273

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 112/280 (40%), Gaps = 15/280 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+   K  G GN  ++ D          D +            D  +L+           
Sbjct: 1   MIPVTKYHGCGNDFIITDWELLKHKNIEDFVKHVCDRHTGIGADGCILVKQKP-----LE 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKE--NRDGSISVD 119
           +   N DGS    CGNG+RC  ++         + +  ET+ G+            + +D
Sbjct: 56  MVFYNADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRID 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG    + K I +    + +      +G  +       +   M   H + FV  D + +D
Sbjct: 116 MGTWDDEPKSIQVDALKEPVMGYELPVGDKS----VTVYSFFMSTVHTVVFVS-DAFAFD 170

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G+ +  H ++ E  N++  ++    +L + T+ERGVG+T ACG+ ACA+   +   
Sbjct: 171 YNEIGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAHEK 230

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 + + +  G L I+  D  HV M G A++  +G++
Sbjct: 231 KGCAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270


>gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231]
 gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002]
 gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19]
          Length = 297

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 108/302 (35%), Gaps = 48/302 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH----------- 53
           + FAK  G  N  ++I+       +T   I+A+         D ++ +            
Sbjct: 11  ISFAKGHGTENDFVIIEDLDAKLPLTPQLISAICDRRAGVGADGVLRVAHVGSLLASGVL 70

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
                     D F+   N DGS  + CGNG R    +L SR  +    F+  T  G    
Sbjct: 71  TQAPEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTV 130

Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +     D  +SVDMG               +        IG  ++        V MGN
Sbjct: 131 SVHAFSATDADVSVDMGPA-------------EVTGVSTCRIGTASYA----GMGVDMGN 173

Query: 165 PHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGV 219
           PH    V       L   DL      +     F EGVN+ +         + +R +ERGV
Sbjct: 174 PHLACVVPGLTPQALAEVDLVQ---PVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGV 230

Query: 220 GLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+    A+  A       +  V V + GG + +    +  V + G +K    G+
Sbjct: 231 GETRSCGTGTVAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQ 289

Query: 279 LD 280
           LD
Sbjct: 290 LD 291


>gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
 gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
          Length = 334

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 26/291 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57
           M    K+ G  N   ++D       +    +  L+              D ++++     
Sbjct: 1   MAQLLKVHGSQNSFFILDQTKLAQPLADGELRQLAQGLTDSHNGLLGGADGLLVVDRPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++  +    
Sbjct: 61  PGAVAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQATE---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
           +  G      ++ P+     A  FD +  DR    PV  L        +++ NPH I FV
Sbjct: 117 LAPGVLAFAVEISPVRFDKTALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLISFV 176

Query: 172 -EDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G  L   +P FS+GVN++ A++   + L +RT+ERGVG T ACG+  
Sbjct: 177 SQQTIEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273
            A+ +A   LH      +  ++V   GG +  I    + H  + + G A  
Sbjct: 237 SATSLAFALLHPASAAFDEPITVYNPGGMVKTIAHFTHQHYWIELIGNATF 287


>gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
 gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
          Length = 287

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 102/284 (35%), Gaps = 38/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDAS---- 59
           V F K  G GN  +++       ++T + + A+         D ++ ++   +       
Sbjct: 9   VKFTKGHGTGNDFVILPDPDGALDLTPELVAAICDRRRGLGGDGVLRVVRAAKHPDGAAL 68

Query: 60  ---VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT----FETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VRFL                T  G++ A+ + 
Sbjct: 69  AGDAEWFMDYWNSDGSFAEMCGNGARVFVRFLLDSGLATPIHGVLPVATRAGLVRARLDG 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +  I+V+M  P L                                  V +GNPH +  + 
Sbjct: 129 ED-IAVEMRRPRL-----------------YATSTAALGALTLPGTAVDVGNPHLVCPLP 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGS 227
             L    L           +F  GVN+               + +R +ERG   T +CG+
Sbjct: 171 AGLELTGLDLTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGT 230

Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
            ACA    +   + +    ++V + GG L +    +N  +++G 
Sbjct: 231 GACAVAAVALRDIARETGTIAVDVPGGRLTVTLT-DNSCWLSGP 273


>gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
 gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
          Length = 326

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +     + +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
 gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
          Length = 270

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 115/286 (40%), Gaps = 32/286 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56
           + F K  G  N  ++I        ++ + + A+         D ++ +           Q
Sbjct: 1   MRFVKGHGTENDFVIIPDPEGRLELSPETVAAICDRRTGIGGDGVLRVVPTARCPEVADQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG 114
               + F+   N DGS  + CGNG+R   R+L          F   T  G+   +   +G
Sbjct: 61  AGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAEG 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P +             +   R  +    +  L     VSMGNPH    +ED 
Sbjct: 121 DVTVDMGRPRV-------------LGESRTAVDGREYQGLG----VSMGNPHLACLIEDP 163

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL+          +F +GVN+ +  +T    + +R +ERG G T +CG+ A A+ V
Sbjct: 164 VAGLDLSR--PPRFDAAVFPDGVNVELFNLTGDHRVTMRVYERGSGETRSCGTGAVATAV 221

Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A+           +V++ GG + +        ++TG A     G++
Sbjct: 222 AAARAVGEETGTWAVRVPGGVVTVTLDATTS-WLTGPAVLVASGEI 266


>gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG]
 gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG]
          Length = 326

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +     + +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341]
 gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62]
          Length = 326

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
 gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
          Length = 326

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +     + +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
 gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
          Length = 269

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 107/281 (38%), Gaps = 25/281 (8%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K +G GN  L+ D                        D +++            + + N 
Sbjct: 5   KYQGCGNDFLIADGSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP-----LSMELWNQ 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDMGEPI 124
           DG+    CGNG+RC V     +      +S+   T  G+              V+ G P 
Sbjct: 60  DGTRAGMCGNGLRCFVHHAYRKGWIQADRSYRIGTGDGLRSVWICSTEPFICRVEAGIPD 119

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS--MGNPHAIFFVEDDLYHYDLAS 182
            D K         +M       G ++  FL      S  +G PH + F  D       A 
Sbjct: 120 FDAK---------RMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTDP--EVVSAE 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
               + +HP F EG N+  AR+     L +RTWERGVG T ACG+ ACAS VA+      
Sbjct: 169 QARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGLC 228

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                V+  GG L +E   +    +TG +   + GK ++K 
Sbjct: 229 PLPCKVRCPGGLLDVEQAPDKQCLLTGPS--VYIGKAEVKA 267


>gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 273

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 118/290 (40%), Gaps = 30/290 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           S  V+F K++G GN  L +D          ++   A+ A     +   D ++++   + A
Sbjct: 2   SHWVEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA 61

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSIS 117
                +RI N DGSE   CGNG RC    L           F T  G + A  +RD ++S
Sbjct: 62  ---YRMRIFNADGSEADMCGNGARCFAMMLRWLGLEDPEMEFLTNVGPVRAHVHRDSTVS 118

Query: 118 VDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175
           + MG  P  +  L  ++    +++ + +++               +G PH + + +  DL
Sbjct: 119 LHMGFNPFGEGALFRVSERVGEVEAEMWYL--------------HVGVPHLVLWADRWDL 164

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
                 S G      P F  G N++     S   L   T+ERGV  LT +CG+ ACA   
Sbjct: 165 REDGFRSLGARYRHDPRFPRGTNVNFVSP-SEGGLTCITYERGVEDLTLSCGTGACAVAA 223

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281
           ++         V V+  GG  L+E    +      + G  +    G L +
Sbjct: 224 SAVMRG-MGSPVRVESPGGYNLVEVGLEDLGARYRLRGPVRVSARGVLYV 272


>gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
 gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
          Length = 329

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 129/316 (40%), Gaps = 29/316 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQDA 58
           + F K+ G  N   +ID         +D    +         +     D ++ +    +A
Sbjct: 3   LTFIKVHGSQNDFFIIDEIDNRIVDWTDVNRRIFTKQICDRSHELGGADGVLFVSASINA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
                +R+ N D SE   CGNG+R V R+L  +   K    ET++  L   +      S+
Sbjct: 63  GAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQAE----SL 118

Query: 119 DMGEPILDWKLIPLARSFDKM----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED 173
             G P    ++ P+    + +    +       P+  L     F  V++ NPH I FV+ 
Sbjct: 119 GFGIPTYQVEISPVLFEPEALPFHYNGKAVFNEPIPELDNELAFSTVAVPNPHLISFVDQ 178

Query: 174 D-LYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + L      +  + L  ++P F +GVN+S  +  + + + +RT+ERGVG T ACG+A  A
Sbjct: 179 EQLDSDKQETLASYLNGENPYFPDGVNVSFVKRLAADKIYVRTFERGVGFTNACGTAMSA 238

Query: 232 SVVASGCLHK--TNRAVSVKMLGGGLLI--EWHDNNH--VFMTGEAKKEWEGKLDIKTGK 285
           S +    L          V   GG + +  E  D+    + + G A     G +     +
Sbjct: 239 SSLIKKQLDDDTLEAVTHVYNDGGRVQVTAEQADDGTYKLHLIGNATFTKTGIVRFDEAE 298

Query: 286 WI-----KKNEDDEAY 296
            I     K+  ++E Y
Sbjct: 299 GISVIQAKETGEEENY 314


>gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R]
 gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 277

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 105/293 (35%), Gaps = 35/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------HDFQD 57
            + FAK     N  ++I       ++T + +  L         D I+ +           
Sbjct: 4   TIPFAKGHATENDFIIIPDEDARLDLTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTV 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
                F+   N DGS  + CGNG+R    +L SR  +   SF   T  G+      +   
Sbjct: 64  DPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHVDILQADQ 123

Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               + VDMG        IP        D +      +          V MGNPH    V
Sbjct: 124 HSAQVRVDMG--------IPDVTGLSTCDINGQVFAGLG---------VDMGNPHLACVV 166

Query: 172 EDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                    D+        +   F  GVN+ I      +++ +R WERGVG T +CG+  
Sbjct: 167 PGLSASALADMELRAPTFDQ-EFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGT 225

Query: 230 C-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             A+  A          V V + GG + ++  D+    +TG +     G++ I
Sbjct: 226 VAAACAALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277


>gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017]
 gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027]
 gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467]
          Length = 326

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   V     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX]
 gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX]
          Length = 274

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 36/293 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  +++       ++ +  + AL         D ++ +            
Sbjct: 1   MRFAKGHGTENDFVILPDPDGELDLDAATVAALCDRRAGLGADGVLRVVRTKALDEPLTG 60

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L     +   +F   T  G      
Sbjct: 61  EAATAQRCEWFMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVL 120

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             DG+I+VDMG   +                 R   GPV      +   +S+GNPH    
Sbjct: 121 EPDGNITVDMGPVRILGP-----------GSARLADGPV------HGTRISVGNPHLACR 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V   +   DL++    L +   F +G N+ + R  +   L++R +ERG   T +CG+   
Sbjct: 164 VARPVAEVDLSA--PPLLRAEEFPQGANVEVFREVASGVLEMRVYERGAAETRSCGTGIV 221

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           A+  A+    + +   +V++ GG   +   ++    ++G A    EG + +  
Sbjct: 222 AAAAAATPPGE-DARWTVRVPGGECTV-VLESGAARLSGPAVIVAEGDVRLSA 272


>gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043]
 gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312]
 gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645]
 gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630]
          Length = 326

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000]
          Length = 326

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEKITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346]
          Length = 326

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATVTHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141]
          Length = 326

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPSLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  ++  +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
 gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
          Length = 304

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 117/309 (37%), Gaps = 38/309 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ------ 56
           + + F K  G  N  +++D      ++T + + AL+        D ++ +   Q      
Sbjct: 2   TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRALTDRRSGVGADGVIRVMRAQLSEEVR 61

Query: 57  -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF----TFETIRGILV 107
                D  V+ F+   N DGS    CGNG+R   RFL  R    +        T  GI  
Sbjct: 62  DLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTALGAAYPIATRAGIRT 121

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            ++  D    V MG        +    +          I    H   R    VSMGNPH 
Sbjct: 122 IRKIGD-WYEVGMGPAQF----LDDTAARTTGHDATVTIPMQPHEPARPGISVSMGNPHT 176

Query: 168 IFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD---------LRTWE 216
           +  + D   L   DL     +    P+   G N+       +++           +R +E
Sbjct: 177 VVALPDHDTLAELDLTRSPGV---DPVPVHGTNVEFVVPDGVDTAADGTVVGRASMRVYE 233

Query: 217 RGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           RGVG T +CG+ ACA+  A        + R  ++ + GG + +     + V + G A+  
Sbjct: 234 RGVGETQSCGTGACAAAAALHRWAGESSPRTWTITVPGGRVQVT-LGTHEVLLAGPAELV 292

Query: 275 WEGKLDIKT 283
            +G + I +
Sbjct: 293 ADGHITITS 301


>gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76]
 gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031]
 gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302]
 gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342]
 gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF]
          Length = 326

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
 gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
          Length = 326

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEAKKEW--EGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHWIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 282

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 113/289 (39%), Gaps = 25/289 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQD 57
           ++  V   K+ G GN  + ID R     +    D   ++         D ++ +    +D
Sbjct: 4   KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK-ENRDGS 115
              D      N DGS  + CGN  RC                F T  G++ A+ +   G 
Sbjct: 64  REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++  P                      I             V+ G PHA+ F + D 
Sbjct: 124 AKVELTPPR----------------DLTLGIELDLGEGRDMVHFVNTGVPHAVVF-KRDA 166

Query: 176 YHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
              D+ + G  L +H  F   G N + A+V    ++ LRT+ERGV   T ACG+ A A  
Sbjct: 167 STVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAGA 226

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  L      V+V+  GG +L    +   VF++G+A + + G++ ++
Sbjct: 227 FIAHALGLAESTVNVRSSGGEILGISIEGGSVFLSGKAVRVFSGEMFLE 275


>gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B]
 gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A]
          Length = 326

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNTGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137]
 gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012]
          Length = 326

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.]
          Length = 256

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 40/284 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  +++D R       +  I  N  +       D ++LI +  D   D  +
Sbjct: 4   NFYKYQGTGNDFIMVDNRAEIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS+   CGNG RC V F     + +    F  + G   A+  ++  +S+ M   
Sbjct: 62  IYFNADGSQ-TFCGNGGRCAVAFARYLNIIKNKTNFIAVDGPHFAEI-KNNIVSLKM--- 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +D   I +                       N      G  H +  V D L +Y +   
Sbjct: 117 -IDVDDIRIQ---------------------ENSVFAYTGTQHHVEMV-DSLDNYPVYEK 153

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
           G  +      + G N++     +  +  +RT+E+GV G T ACG+   A  +A     KT
Sbjct: 154 GKQIR-ASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIAMHKTKKT 212

Query: 243 NRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
               + + + GG L + + + N     V++ G A   ++G++ I
Sbjct: 213 TSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256


>gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 271

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 36/291 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + FAK  G  N  +++       ++T +A+  L         D ++ +   +        
Sbjct: 1   MRFAKGHGTENDFVILPDPDGELDLTEEAVRLLCDRRAGIGADGVLRVVRTRALGEALAP 60

Query: 58  -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L     ++   F   T  G    + 
Sbjct: 61  AARTAERSEWFMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQV 120

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             DG I++DMG   +         S  K+ R   H              +S+GNPH    
Sbjct: 121 EADGGITIDMGRVEMQ------GTSSAKLARQVVH-----------GEQISVGNPHLACE 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V   +   DL      +     F  G N+ + R  +   L++R +ERG G T +CG+   
Sbjct: 164 VTVPVAEVDLGELP--VLDVEAFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTGIV 221

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A+  A+    +      V++ GG   + + D +   ++G A    EG+ ++
Sbjct: 222 AAAAAATPRGE-GATWRVRVPGGECTV-FLDADGARLSGPAVIVAEGETNL 270


>gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
 gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
          Length = 261

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 26/265 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ L+            + +  L  +     D  + +     +  DA + I N D
Sbjct: 19  YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 69

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  L S+  +   +  T  G+          + VDM        + 
Sbjct: 70  GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 129

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L    D + ++                 +  G PHA+  +  ++   DL+  G  L  H
Sbjct: 130 RLESRPDPLPKE--------------VVCIHTGVPHAVVILP-EISTLDLSILGPFLRYH 174

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248
             F  +GVN++  ++     L +RT+ERGV G TAACG+ A AS +     +    ++ +
Sbjct: 175 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 234

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKK 273
              GG L+    +   V++ G   +
Sbjct: 235 HTWGGELMTVSQNRGRVYLQGSVTR 259


>gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029]
 gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029]
 gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN]
          Length = 257

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 26/265 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ L+            + +  L  +     D  + +     +  DA + I N D
Sbjct: 15  YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  L S+  +   +  T  G+          + VDM        + 
Sbjct: 66  GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L    D + ++                 +  G PHA+  +  ++   DL+  G  L  H
Sbjct: 126 RLESRPDPLPKE--------------VVCIHTGVPHAVVILP-EISTLDLSILGPFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248
             F  +GVN++  ++     L +RT+ERGV G TAACG+ A AS +     +    ++ +
Sbjct: 171 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 230

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKK 273
              GG L+    +   V++ G   +
Sbjct: 231 HTWGGELMTVSQNRGRVYLQGSVTR 255


>gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 186

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147
           L   + + +    T RG+L    + D ++SVDMG+P+L+W+ IPL    D          
Sbjct: 2   LMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLTGEMDTTAL------ 55

Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
                   NP   SMGNPH  FFVE DL   D+A+ G ++  +P+F    N+   +V   
Sbjct: 56  ----PISGNPTACSMGNPHCTFFVE-DLASVDVAAIGPMIEANPLFRNRTNVHFVQVIDR 110

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267
             + LR WERG G+    GS  C +VV        +  V V+  GG + ++W     VF+
Sbjct: 111 GRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVFL 170

Query: 268 TGEAKKEWEGKLDIK 282
           TG  K  + GK+ I+
Sbjct: 171 TGSVKTVFSGKIAIQ 185


>gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 269

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 29/285 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G GN  ++ D R      +   I  L         D I+L+ +   A   A +RI
Sbjct: 5   FTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIAH--ARMRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEPIL 125
            N DGSE + CGNG+RC++ ++ S     S  + ET   +L A ++    I+++MG P  
Sbjct: 63  FNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSASN-ITIEMGSPNK 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               +P++                    +     ++ G PH I F E+ +  + L   G 
Sbjct: 122 LNWNVPISFESK----------------IYYVHSLNTGVPHIILFAEN-IEQFPLERMGP 164

Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +  HP++  +G N SI +    ++  +RT+ERGV   T ACG+ A A+ +A+   ++ +
Sbjct: 165 FIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGVEAETLACGTGATAAALAAAFQYRLS 224

Query: 244 RAVSVKMLGGG-LLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
             +S++   G  L I +        +V MTG A   + G + +++
Sbjct: 225 APISMQTRSGICLEIGFTLLNQKFTNVTMTGPALAVFNGSIKLES 269


>gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum]
 gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032]
          Length = 277

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/293 (22%), Positives = 105/293 (35%), Gaps = 35/293 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------HDFQD 57
            + FAK     N  ++I       ++T + +  L         D I+ +           
Sbjct: 4   TIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTV 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
                F+   N DGS  + CGNG+R    +L SR  +   SF   T  G+      +   
Sbjct: 64  DPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQ 123

Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               + VDMG        IP        D +      +          V MGNPH    V
Sbjct: 124 HSAQVRVDMG--------IPDVTGLSTCDINGQVFAGLG---------VDMGNPHLACVV 166

Query: 172 EDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                    D+        +   F  GVN+ I      +++ +R WERGVG T +CG+  
Sbjct: 167 PGLSASALADMELRAPTFDQ-EFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGT 225

Query: 230 C-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             A+  A          V V + GG + ++  D+    +TG +     G++ I
Sbjct: 226 VAAACAALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277


>gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
 gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
          Length = 259

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 41/285 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++ID R    D+++   I  L         D ++ I+    +  D  + 
Sbjct: 5   FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKLCDRRFGVGADGLIKIN--SISGYDFEVD 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGNG RC V F     + +   +F  I G+  A   +   + + M    
Sbjct: 63  YYNSDGSKSF-CGNGARCSVAFAHELGIIKDHVSFMAIDGVHEA-VKKGSLVFLKMN--- 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D   I ++                        FV++ G+PH I F E+ +  +D+ S+G
Sbjct: 118 -DVSEIDVSHKE---------------------FVLNTGSPHFIHFTEN-VADFDIVSYG 154

Query: 185 NLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +     +  EG+N++        S +++T+ERGV   T +CG+   A+ +A G  +  
Sbjct: 155 KQIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLI 214

Query: 243 --NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                 +VK  GG L + +   N    ++++ G A+  ++G+ ++
Sbjct: 215 VGEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259


>gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
 gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
          Length = 273

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 116/296 (39%), Gaps = 36/296 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS----- 59
           + F K  G  N  +++       ++    + AL         D ++ +   + A      
Sbjct: 1   MRFIKGHGTENDFVILPDPDGALDLRPATVAALCDRRAGIGADGVLRVVRTKAAGDPIAE 60

Query: 60  -----VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENR 112
                 + F+   N DGS  + CGNG+R   R+L          +   T  G+       
Sbjct: 61  ELAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGP 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G +SVDMG P++               R R  +   +   LR    VSMGNPH    V+
Sbjct: 121 SGDVSVDMGAPLVQ-------------GRGRARLAGEDFTGLR----VSMGNPHLACPVD 163

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +   DL     +  +   F +GVN+ + R+     +++R  ERG G T +CG+ A A+
Sbjct: 164 RPVAELDLTRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSCGTGAVAT 221

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            VA+     +     + + GG + +   D     + G A    EG++      W++
Sbjct: 222 AVAAAGEDPSPGEWIIDVPGGRVTVT-LDGRTSHLRGPAVLVAEGEIR---ADWLR 273


>gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
 gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
          Length = 282

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 103/294 (35%), Gaps = 40/294 (13%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA-- 62
           +DF K  G  N  +V+D   G  +                  D ++     + A +DA  
Sbjct: 5   IDFTKGHGTENDFVVLDDPEGALELEAVAVAALADRRAGIGGDGVIRCVRSRCAGIDAPP 64

Query: 63  -----FIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKE----- 110
                F+   N DGS  + CGNG+R     L     +    F   T  G+          
Sbjct: 65  DAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFEILTRAGVRTVDILEEPA 124

Query: 111 --NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D S+ V MG             S          I  V          V MGNPH +
Sbjct: 125 SPGGDWSVRVGMG------------ASRSTQRARTVEIAGVRLTATD----VDMGNPHTV 168

Query: 169 FFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            F+  +L     DL      L   P    G N+ + R      + +R  ERGVG T +CG
Sbjct: 169 VFLPPELALEGLDLTRR-PALEPEPA--RGANVELVRERGPRHVAMRVHERGVGETRSCG 225

Query: 227 SAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           +   A  VA+            +V + GG L + W +   V +TG A+   +G+
Sbjct: 226 TGVAAVAVAAALRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADGR 279


>gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
          Length = 335

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A +    N         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171
             + SV++         +P A     +DR    + P  H  L+    V++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLG--VDRIVDTVLPAIHPSLKF-TAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H    A     +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHERYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWI----KKNEDDEAY 296
           +++GK      +   +  AY
Sbjct: 296 LESGKLTQATFQPTGEQAAY 315


>gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
 gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
          Length = 277

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 115/286 (40%), Gaps = 31/286 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-------HDFQD 57
           ++F K  G  N  +++        +T   + AL         D ++ +           D
Sbjct: 4   IEFLKGHGTQNDFVLLPDPDASLELTPQRVAALCDRRRGLGADGVLRVVRSAALDAGPSD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115
           +  + F+   N DGS  + CGNG+R   R+L          F   T  G    + + D S
Sbjct: 64  SEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDDLS 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V MG   +    + +    +                  +   V +GNPH +  ++DD+
Sbjct: 124 VTVHMGAATITGTSVAVVGGRE-----------------LSGVAVDVGNPHLVSVLDDDV 166

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL           +F EGVNL    V   E L +R +ERGVG T ACG+   A+V A
Sbjct: 167 DELDLRDAPRY--DTEVFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVAAVAA 224

Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +  L   +    +V + GG + +         +TG A+   +G+LD
Sbjct: 225 ALHLRGVDTGESTVDIPGGRVSVTV-GKGVSTLTGPAEFVAKGELD 269


>gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
 gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
          Length = 326

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T + I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTVEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   IP+      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244]
          Length = 326

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 33/319 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS---TDDNTHFDQIML----IHDFQD 57
           M+   K+ G  N   ++D      ++T++ I  L        T           + +   
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTH 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
            + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  ++       
Sbjct: 62  GTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVRQAPNLAEE 121

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +  V++     +   I +      +  +          F      V++ NPH + FV+
Sbjct: 122 VATYQVEISPVSFEAVTISMHLGVQTLIDEIVPALSKTIRFT----AVAVPNPHLVAFVD 177

Query: 173 DD-LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   +       +   +P F EG+N+S   +     L +RT+ERGVG T+ACG+A C
Sbjct: 178 HETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFTSACGTAMC 237

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFMT--GEA--KKEWEGKL-DI 281
           AS +    L        ++VK  GG +    H+  +   +M   G A      EG L D+
Sbjct: 238 ASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHLIEGSLTDL 297

Query: 282 KTGKWIK----KNEDDEAY 296
             G + K    +  + + Y
Sbjct: 298 LNGAFEKITITETNEQKHY 316


>gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 357

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%)

Query: 10  KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55
           K +G GN  +   D  G H     D I           D ++ I                
Sbjct: 66  KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 125

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
            +   V+ F+   N DG+  + CGNG R   +FL  +      +  +F   T  G+    
Sbjct: 126 MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 185

Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
              D          VDMG   +  +             D + +             V MG
Sbjct: 186 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 232

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214
           NPH +  VED      +    +L       P    G N+  AR+ +L++        +R 
Sbjct: 233 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 292

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A   
Sbjct: 293 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 350

Query: 275 WE 276
            E
Sbjct: 351 AE 352


>gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1]
          Length = 290

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 102/301 (33%), Gaps = 43/301 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIH-------- 53
           S  ++F K  G  N  +V+       ++T + + AL         D ++ +         
Sbjct: 2   SGGIEFTKGHGTRNDFVVLPDPDAALDLTPERVAALCDRHGGIGADGVLRVVRWAKLAGD 61

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK 109
                    V+ F+   N DGS  + CGNG+R   R+L  R          T  G+  A 
Sbjct: 62  ESVPEPVPGVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTAT 121

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            + D ++SVDMG   +    +                         +   + +GNPH   
Sbjct: 122 LSGD-TVSVDMGPVAIGPASV-----------------ATTGGARFDGIALDVGNPHLAC 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL----ESLDLRTWERGVGLTAAC 225
               D    DL   G       +F  GVN+              + +R  ERGVG T AC
Sbjct: 164 VTATDPDALDLT--GAPAVDPEVFPRGVNVEFVTPLDGPADGGRVRMRVHERGVGETLAC 221

Query: 226 GSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-----FMTGEAKKEWEGKL 279
           G+    A V A          V V   GG L +     +        + G A     G++
Sbjct: 222 GTGTVAAVVAALRAAGHPAGDVHVDTPGGRLRVTVGAGDDAATGTTVLHGPAVLLATGEI 281

Query: 280 D 280
           D
Sbjct: 282 D 282


>gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 275

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 34/272 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M  +AK+ G GN  LV+D+RG      +  ++A      +++   D ++L+     + ++
Sbjct: 1   MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVE--SSSRLN 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGS----I 116
             +R+ N DGSE + CGNG RC+ R+     +      FET+ G + A+ +         
Sbjct: 59  FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPFVRLRLA 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VD+G+   + K     +                         +++G PH + F+ED   
Sbjct: 119 EVDLGDATWERKTSAGGQELA-------------------YSFLTVGVPHCVVFLEDLAT 159

Query: 177 --HYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
               +L   G  L  +  +F  G N++         L L T+ERGV  LT +CG+ + A+
Sbjct: 160 RPREELFRLGRELRGRTDLFPRGTNVNFLAPEKEG-LFLITYERGVEDLTRSCGTGSVAA 218

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264
            V +  L +    V V+ LGG   +   D+  
Sbjct: 219 AVTARRLGRCGDDVKVRNLGGINRVLLEDSGP 250


>gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
 gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
          Length = 314

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 108/311 (34%), Gaps = 47/311 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56
           S + F+K  G GN  +++        I  + +  L         D ++     +      
Sbjct: 17  SGLAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGR 76

Query: 57  -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGIL 106
                    + F+   N DGS  + CGNG+R  V FL ++         + T  T  G  
Sbjct: 77  ELQAVHPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTRAGAK 136

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
                 DG  +VDMG     +     AR+ D +      +        R    VSMGNPH
Sbjct: 137 TVVRTDDG-YAVDMGPWEFIFPGEATARAMDSL------VTADGLEVPRPALSVSMGNPH 189

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220
            +  +  +L   +           P  + G N+     +         ++ +R  ERGVG
Sbjct: 190 TVVALA-ELSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTITMRVHERGVG 248

Query: 221 LTAACGSAACASVVASGCLHKTNRA-----------VSVKMLGGGLLIEWHDNNHVFMTG 269
            T +CG+ ACA+ VA                     V VK   G        + HV ++G
Sbjct: 249 ETQSCGTGACAAAVAIRHWAGQGAPDAWNVKVPGGVVGVKFFAGP-----EGHEHVELSG 303

Query: 270 EAKKEWEGKLD 280
            A     G L 
Sbjct: 304 PAVIVASGTLS 314


>gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
 gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
          Length = 425

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 97/287 (33%), Gaps = 73/287 (25%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  +++D R          +A+     +     D ++ +    +   D  
Sbjct: 89  LHFVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVN-GADYN 147

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSISVDM 120
           I+I N DGSE + CGNG+RC  RF+          SFT  T  G ++ +   DG + VDM
Sbjct: 148 IKIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQVKVDM 207

Query: 121 GEPILDWKLIP---LARSFDKMDRDRFHIGPVNHLF------------------------ 153
            E I     IP   LA     + + +  +  +                            
Sbjct: 208 DEHIPSGPDIPTKLLATKNKAVVQAKLVVEGLPWHVTCVSMGVTFGAKEVKVKVDMGEPI 267

Query: 154 ----------------------------LRNPFVVSMGNPHAIFFVEDDLYHYDLA--SF 183
                                         +   VSMGNPH + F   +L   DL     
Sbjct: 268 LSGPGIPTKLLATKNKAAVQAELAVEGLTWHVTCVSMGNPHCVTFGAKELKVDDLKFSKI 327

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           G    +H MF    N    + +S   L++R           CG  A 
Sbjct: 328 GPKFERHEMFPARTNTESVQDSSCSHLNMRV----------CGHGAV 364


>gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
 gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
          Length = 281

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 105/299 (35%), Gaps = 41/299 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++++       ++ + + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVIVEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
                   S D F+   N DGS  + CGNG R    +L     +   +FT  T  G    
Sbjct: 61  AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120

Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +       S++V+MG   +                    +G  ++  L     V MGN
Sbjct: 121 TVHSCDATAASVTVEMGPARV-------------TGVSTASVGGESYAGLG----VDMGN 163

Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           PH    +   +            +     F  GVN  +        + +R +ERGVG T 
Sbjct: 164 PHLAAVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQ 223

Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +CG+   A+  A+          V V + GG + +E +D     +TG +     G+  +
Sbjct: 224 SCGTGTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281


>gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 335

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171
             + SV++       + +P A     +DR    + P  H  L+    +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKW----IKKNEDDEAY 296
           +  G W    IK   +   Y
Sbjct: 296 LLAGDWQQAKIKATGEQAEY 315


>gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 300

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%)

Query: 10  KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55
           K +G GN  +   D  G H     D I           D ++ I                
Sbjct: 9   KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 68

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
            +   V+ F+   N DG+  + CGNG R   +FL  +      +  +F   T  G+    
Sbjct: 69  MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 128

Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
              D          VDMG   +  +             D + +             V MG
Sbjct: 129 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 175

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214
           NPH +  VED      +    +L       P    G N+  AR+ +L++        +R 
Sbjct: 176 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 235

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A   
Sbjct: 236 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 293

Query: 275 WE 276
            E
Sbjct: 294 AE 295


>gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
 gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
          Length = 277

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 111/283 (39%), Gaps = 27/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM G GN  +V+D     +   +  + A        +   D +++I   + A+   
Sbjct: 1   MNFWKMNGNGNDFIVVDATAAENIGLDWPAVARALCPRRQSIGADGLLVIERSKTAN--F 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMG 121
           F+RI N DGSE + CGNG RC  RF        +S  FET+ G++ A+ +    + ++MG
Sbjct: 59  FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARVDG-RYVEINMG 117

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               + +      + +                        +G PH + F  +++      
Sbjct: 118 RVRPEPEWSDRTMTLE--------------GETFRATFALVGVPHLVLFSREEVGVDFAR 163

Query: 182 SFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  L      F +G N++ A   +   +   T+ERGV  LT +CG+   A  +A+   
Sbjct: 164 RWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALAARLN 223

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
             +     V   GG   +   +         + G       G+
Sbjct: 224 GLSGPVTEVHNPGGTNRVSLTEMGDGEYEALLGGTTSLVMTGQ 266


>gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
 gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
          Length = 281

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 41/299 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++I+       ++ + + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVIIEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
                   S D F+   N DGS  + CGNG R    +L     +   +FT  T  G    
Sbjct: 61  AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120

Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +       S++V+MG   +                    +   ++  L     V MGN
Sbjct: 121 TVHSCNATAASVTVEMGPARV-------------TGVSTASVAGESYAGLG----VDMGN 163

Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           PH    +   +            +     F  GVN  +        + +R +ERGVG T 
Sbjct: 164 PHLAAVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQ 223

Query: 224 ACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +CG+   A+  A+          V V + GG + +E +D     +TG +     G+  +
Sbjct: 224 SCGTGTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281


>gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis]
 gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 307

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 108/284 (38%), Gaps = 26/284 (9%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML-IHDFQDASVDAFI 64
           +F     +GN  +V+D RG        A+  L         D ++       +A     +
Sbjct: 31  EFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLCDRHFGVGADGVLFGPLGAPEAGEPVRL 90

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAKENR--DGSIS 117
           R+ N DG+E +  GNG+R     L           + F   T  G +  +      G++ 
Sbjct: 91  RMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEFPLRTAAGDVPVRILDLASGTVQ 150

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG P                  +   +G            V  GNPHA+  +  ++  
Sbjct: 151 VGMGRPEFG------------ATGESLDVGGRRLAVT----SVHNGNPHAVVPLA-EISA 193

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G L+A H  F    N+    +    ++ +  +ERG G T A GS+ACA+  A+ 
Sbjct: 194 GLARELGPLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAAAAAAH 253

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T   V V+M GG + +    +  V MTG A++   G+   
Sbjct: 254 ALGLTGPDVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRFSP 297


>gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 294

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 50/302 (16%)

Query: 10  KMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF------------- 55
           K +G GN  +   D  G H     D I           D ++ I                
Sbjct: 3   KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDGHDAQK 62

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
            +   V+ F+   N DG+  + CGNG R   +FL  +      +  +F   T  G+    
Sbjct: 63  MRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLELEEGDAFKLGTRAGVKRIT 122

Query: 110 ENRDG------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
              D          VDMG   +  +             D + +             V MG
Sbjct: 123 RMPDNPELGRQLWRVDMGSWSMGAE-------------DEYTVTIPGDTGSGKGTFVDMG 169

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLD------LRT 214
           NPH +  VED      +    +L       P    G N+  AR+ +L++        +R 
Sbjct: 170 NPHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRV 229

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +ERG G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A   
Sbjct: 230 YERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALT 287

Query: 275 WE 276
            E
Sbjct: 288 AE 289


>gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 249

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 +   G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFN 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327]
          Length = 249

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 108/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F+    K   + +F T  G++ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 + + G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 249

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 + + G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
 gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
          Length = 335

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 77/308 (25%), Positives = 129/308 (41%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ I     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAITAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A     +DR    + P  H  L+    +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK 288
           +  G W +
Sbjct: 296 LLAGDWQQ 303


>gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K]
 gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K]
          Length = 266

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 121/290 (41%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D           A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAERARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114
            A + I N DGS    CGNG+RCV R L   R        +T  G      +R       
Sbjct: 59  TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADRAVE 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   L+ +               F +G      LR    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  + G  L +  +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ V
Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           A+           V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 217 AAVSRGLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
 gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
          Length = 335

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +++  + A +    N         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171
             + SV++         +P A     +DR    + P  H  L+    V++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLG--VDRIVDTVLPAIHPSLKF-TAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H    A     +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFECVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWI----KKNEDDEAY 296
           +++GK      +   +  AY
Sbjct: 296 LESGKLTQATFQPTGEQAAY 315


>gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 266

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 122/290 (42%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D         + A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114
            A + I N DGS    CGNG+RCV R L   R        +T  G      +R       
Sbjct: 59  TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGPGGAVE 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   L+ +               F +G      LR    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMGPARLEGE-------------QEFRVGGEALRALR----VSMGNPHAVLF--DA 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  + G  L +  +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ V
Sbjct: 160 PERARALAVGPALER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           A+           V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 217 AAVSRGLARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
 gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
          Length = 266

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 118/290 (40%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M    + F K  G+GN  +V+D           A            D ++ +   + +  
Sbjct: 2   MHGVPLSFVKYHGLGNDFIVVDG---PLMDPDRARRLCDRRRGIGADGVLTVLPPRTSGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114
            A + I N DGS    CGNG+RCV R L   R    +   +T  G      +R       
Sbjct: 59  AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGLSGALVIDTDSGPKRCVVHRTPAGVPS 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   +                +    G      +R    VSMGNPHA+ F    
Sbjct: 119 AVSVEMGPAAVQ-------------GDEELRAGGETVRAVR----VSMGNPHAVLFDTPT 161

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                 ++ G LL +      GVN+  AR      +DL  WERG GLT ACG+ ACA+ V
Sbjct: 162 RERA--SAIGPLLER--AVPGGVNVGFARP-GPHGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           AS      K    V V++ GG L I    +   V M G A + + G+ D+
Sbjct: 217 ASVRAGAVKAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266


>gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5]
          Length = 268

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 35/288 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            +V F K EG GN  ++ID R    +  +  I AL         D +M +   +   +D 
Sbjct: 1   MLVSFVKYEGAGNDFILIDDREELFSADARLIAALCDRHFGIGADGLMTLR--RSVEMDC 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +R  N DGS  + CGNG RC   F            F+   G+  A+  R  + + ++ 
Sbjct: 59  SMRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRTGEIE 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +++   I   + +                     + ++ G PH + F E +L   D+ 
Sbjct: 119 LGMINVSEIRSGKGW---------------------WFLNTGVPHYVEFTE-ELDGVDVK 156

Query: 182 SFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-GC 238
             G ++      F +G N++ A +     + +RT+ERGV   T ACG+ A A+ + +   
Sbjct: 157 GLGRMIRHDTARFPQGTNVNFAEIAGEGEIRMRTYERGVENETLACGTGATAAAIITNYA 216

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN------NHVFMTGEAKKEWEGKLD 280
           L        + + GG L + +           + +TG A++ ++G  +
Sbjct: 217 LQHETTKYRITVPGGELHVRFSHEPGTQTYTDIRLTGPARRVFKGVFE 264


>gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 249

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  G++ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 + + G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3]
          Length = 249

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 +   G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
 gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
          Length = 322

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 107/312 (34%), Gaps = 53/312 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------- 55
           + F+K  G GN  ++I   G    +T++ +  L         D ++              
Sbjct: 27  LTFSKGHGTGNDFVLIADPGDAHEVTAEQVAQLCDRHVGIGGDGLIRAVPSRFLPEGRVA 86

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108
             QD   + F+   N DGS  + CGNG+R  V FL           ++ T  T  G+   
Sbjct: 87  LEQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKV 146

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               +G  +VDMG     +     +++ D +      +        R    VSMGNPH +
Sbjct: 147 VRTVNG-YAVDMGPWEFLFPEEATSKAMDAL------VSAEGLEVPRPGLSVSMGNPHTV 199

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L               P  + G N+               ++ +R  ERGVG T
Sbjct: 200 VALA-ELSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGET 258

Query: 223 AACGSAACASVVASGCLHKTNRAVSVK--------------MLGGGLLIEWHDNNHVFMT 268
            +CG+ ACA+ VA    H                         G G         HV ++
Sbjct: 259 QSCGTGACAAAVA--IRHWAGDTAPNDWHVKVPGGVVGVKFFPGAG------GREHVELS 310

Query: 269 GEAKKEWEGKLD 280
           G A     G L 
Sbjct: 311 GPAVIVATGTLS 322


>gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 249

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ +S A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSSLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   S  F T  G++ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPSMIFLTGAGVIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+K+ +                 +   G PH + F +       L  F 
Sbjct: 114 ---KIKSVQNTFEKLGK--------------TWQLCDTGVPHLVHFCQS------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEMGFAYKNEELFFEGKVKYCFEANYN 247


>gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2]
 gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2]
          Length = 288

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 119/290 (41%), Gaps = 23/290 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITS--------DAINALSTDDNTHFDQIMLI-HD 54
           + V F K  G GN   V+D      +  +        +A   LS  +    D ++ +  +
Sbjct: 5   NTVPFEKFHGTGNDFFVVDADDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLALE 64

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +       + ++  DGS    CGNG R    +   R        +T  G   A  +   
Sbjct: 65  SRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTRRASLDG-T 123

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V+MG P    + +PLA   + +D +         +       V+ G PHA+ FV+D 
Sbjct: 124 DVTVEMGAPSFAPRDVPLASDDELVDTE---------VEGLTVTAVNTGVPHAVAFVDDV 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
                L S    +    +F EG N+++A          RT+ERGV G T +CG+ A A V
Sbjct: 175 DDVD-LESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAVAVV 233

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+  L +   +  V+V   GG L +   D     + G A  E +G+ DI
Sbjct: 234 AAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283


>gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 249

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSTLAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 +   G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
 gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
          Length = 276

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 32/287 (11%)

Query: 1   MQSSMVDFA----KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ 56
           M SS +          G GN+  +          +   I  L T    H D  + +   Q
Sbjct: 1   MASSFLSMTCRYPIYSGAGNRFFL----KTGSPSSPALIRLLCTQA--HVDGFLYLEPSQ 54

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            A  DA + I N DGS    CGNG+RC + +L  ++++   T  T +G+          +
Sbjct: 55  IA--DAKLAIFNADGSRPTMCGNGLRCAIAYLAQKLEKPQITIATDQGVYSGVYFSWERV 112

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDM  P  ++    +  S                L     F +  G PH + F   ++ 
Sbjct: 113 LVDMTLPEWNFSSHEIVLS---------------GLGKVQVFFIHTGVPHLVVFCP-EIA 156

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVV 234
             D+A  G  L  H  F   G N++   + S + L +RT+ERG+   +AACG+   A+V 
Sbjct: 157 SIDVAVLGRELRYHTTFAPSGANVNFVEIFSEQQLRIRTYERGLERESAACGTGCIAAVK 216

Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +       +  V V +    + + + +   +++ G    E  G+L+
Sbjct: 217 TALFRGFVKQGEVIVHVSQESMKV-FIEGERIYLEGPVTIESSGRLE 262


>gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100]
 gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100]
          Length = 285

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 35/291 (12%)

Query: 9   AKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDA 58
            KM G GN   +ID R             +T      L  D       D  +LI D    
Sbjct: 10  TKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDG-SE 68

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGS 115
             D      N DGS  + CGN  RC  RF    ++ K      F+T  G++VA+   +  
Sbjct: 69  GFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSR 128

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V M E     +LI L                          +V+ G PH +  +    
Sbjct: 129 IRVKMPEARFIQELIELKTKS---------------SSTEKFALVNTGVPHLVQKIHAFS 173

Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
               L          H +   G N++     S   +   T+ERGV   T ACG+ A A+ 
Sbjct: 174 DTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAA 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKE--WEGKLDI 281
                  K   +V V+M GG + + +   + H  M G+A     ++  L++
Sbjct: 234 FVHNKETK-ESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEV 283


>gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 335

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A     +DR    + P  H  L+    +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK 288
           +  G W +
Sbjct: 296 LLAGDWQQ 303


>gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
 gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
          Length = 335

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNT------HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A +    N         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-----R 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV- 171
             + SV++         +P A        D   + P  H  L+    V++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGGDRIVDT--VLPAIHPSLKF-TAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +L A +P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H    A     +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWI----KKNEDDEAY 296
           +++GK      +   +  AY
Sbjct: 296 LESGKLAQATFQPTGEQAAY 315


>gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
          Length = 249

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     D  ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFIIANANEKQDR-STLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T   I+ A  N D  + V +G   
Sbjct: 58  FYNNDGSRAPMCGNGSRAAAHFAHHINKINPNMSFLTGAKIIKANVNHD-RVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 +   G PH + F E+      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCDTGVPHLVHFCEN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++    SL +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDKNSLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NEVKITPKSGE-EVRFKYKNEELFFEGKVKYCFEANYN 247


>gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 164

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 120 MGEPILDWKLIPLARSFDK-MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV DD+   
Sbjct: 1   MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQA 55

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS  
Sbjct: 56  PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 115

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 116 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 161


>gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W]
 gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei
           BD-II]
          Length = 335

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A     +DR      P  H  L+    +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTFLPAIHPSLKF-TAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +L AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK 288
           +  G W +
Sbjct: 296 LLAGDWQQ 303


>gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20]
 gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20]
          Length = 249

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++I+     D  ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVIINASEKKDR-SALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F       +    F T  G++ A    + S+ V +G+  
Sbjct: 58  FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANV-DNNSVEVSLGKI- 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K I  A S  +                +N  +   G PH + F E+ L  +DL    
Sbjct: 116 ---KNIQDAFSECE----------------KNWQLCDTGVPHLVHFCEN-LDEFDLKLCK 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +  K+       N++  +V +  +L +RT+ERGV   T ACG+   A    +    K +
Sbjct: 156 QMREKY-----NANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               V    G  L    +N  +F  G+ +  +E   +
Sbjct: 211 NQARVIPKSGEELSFKFENEELFFKGKVRCCFEANYN 247


>gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
 gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
          Length = 319

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 110/310 (35%), Gaps = 44/310 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56
           + F K  G  N  +++       N T+D + A+         D ++              
Sbjct: 7   LAFTKGHGTENDFVLVADPDGVWNPTADVVAAICDRRAGVGGDGLIRAVRSSAVPDAAGT 66

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-------MKRKSFTFETIRGILVAK 109
               + F+   N DGS  + CGNG+R    FL             + F   T  G+   +
Sbjct: 67  APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              DG  + D+G   L      L    D +      + P      R    V +GNPH + 
Sbjct: 127 READGQWTADLGPWALTGGDDALGAGSDALV-----LVPGLDAVARPALSVDLGNPHTVV 181

Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIAR-----------VTSLESLDLRTWE 216
            + D+  L   DL          P+  +G N+ +             V  +  + +R  E
Sbjct: 182 ALPDEAELAAADLT---RAPEVRPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHE 238

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NHVFMTG 269
           RG G T +CG+ ACA+ +A+             V + GG L++            V+++G
Sbjct: 239 RGSGETRSCGTGACAAALATRAWAGRGAPDVWRVDVPGGRLVVTVGAGSSLAQGTVWLSG 298

Query: 270 EAKKEWEGKL 279
            A+    G L
Sbjct: 299 PAQLVATGVL 308


>gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 249

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ +  A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSVLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  G++ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                     G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQFCDTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
 gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
          Length = 276

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 38/292 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-------HDFQD 57
           + FAK  G  N  ++I+       ++S+ +  L         D ++ +           +
Sbjct: 1   MKFAKGHGTENDFVIIEDHEGTLELSSERVRVLCDRRAGIGGDGLLRVVRAGALGEPVAE 60

Query: 58  --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-- 111
             A  D F+   N DGS  + CGNG R    ++ SR  +  +SF   T  G      +  
Sbjct: 61  GIAPADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSF 120

Query: 112 --RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
              D  +SV+MG   +         S   M  + F               V MGNPH  A
Sbjct: 121 DEHDAQVSVEMGPAEV------TGVSTASMVGENFA-----------GLGVDMGNPHLAA 163

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +          D+A        H  F  GVN+ +       ++ +R +ERGVG T +CG+
Sbjct: 164 VIPGLTPESLADMAFAQPEF-DHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGT 222

Query: 228 AAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               A+  A     +    V V + GG + +E  D     +TG ++   EG 
Sbjct: 223 GTVAAARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEGT 273


>gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 266

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 122/290 (42%), Gaps = 34/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D         + A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENR-----DG 114
            A + I N DGS    CGNG+RCV R L   R        +T  G      +R       
Sbjct: 59  AATMHIFNSDGSVAAMCGNGIRCVARHLADARGLDGDLVLDTDSGPKRCTIHRGPGGAVE 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++SV+MG   L+ +               + +G      LR    VSMGNPHA+ F  D 
Sbjct: 119 AVSVEMGPARLEGE-------------QEYRVGGEALRALR----VSMGNPHAVLF--DA 159

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                  + G  L +  +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ V
Sbjct: 160 PERARALAVGPELER--LVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAV 216

Query: 235 ASGCLHK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           AS           V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 217 ASVSRGLARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
 gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
          Length = 245

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 35/277 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  ++        + + DAIN  +  +    D +++I   Q A  D    
Sbjct: 1   MTYTKYSASGNDFVIF-HTLIKKDYSQDAINLCNRTEGIGADGLIVIVPNQTA--DFEWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGNG R V  +  +      +  F T  G + +  + +  +   M +P 
Sbjct: 58  FYNSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITSSVDGN-IVETQMTKP- 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                        K+ ++ F    +        +++  G PH I  V+      DL  + 
Sbjct: 116 -------------KIIKEEFEQEGL------TWYLIDTGVPHLITIVD------DLEKYN 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
           + L     +    N++ A++     + +RT+ERGV G T ACG+   A  + +  L   +
Sbjct: 151 HDLCAKMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANALGLVD 209

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279
               V       L +    +  +F  G  KK +  ++
Sbjct: 210 TKAFVYPKSKEELTVSIR-DGELFFKGAVKKVFVAQI 245


>gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
 gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
          Length = 306

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 105/307 (34%), Gaps = 41/307 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFD--------------QIM 50
           V F K  G  N  +++        ++++ +  +         D                +
Sbjct: 13  VPFGKGHGTQNDFVLLADPDAKLRLSAERVARICDRRAGIGGDGLLRAARAGALLAEGEI 72

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG---- 104
                     D F+   N DG  VQ CGNG R    FL +    +R      T  G    
Sbjct: 73  AALPEGVGEEDWFMDYRNADGGAVQMCGNGARVFAHFLRANGLEERDEHVIGTRAGAKRV 132

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            L+A +     + V+MG   +  +                         + + F V +GN
Sbjct: 133 RLLAFDRGSAEVEVEMGRARVGGRS-----------AASLPAEGTEGRRVFDGFAVDVGN 181

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH +        D L   DLA          +F EGVN+      S E   LR  ERGVG
Sbjct: 182 PHLVCLAPALGLDGLAGLDLARQPEYDR--DVFPEGVNIEFVVPHSPEKATLRVHERGVG 239

Query: 221 LTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T ACG+ + A        L      V+V   GG + +    +    ++G +     G+ 
Sbjct: 240 ETKACGTGSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEF 299

Query: 280 DIKTGKW 286
           D+  G+W
Sbjct: 300 DL--GQW 304


>gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang]
 gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang]
          Length = 335

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NR 112
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A     +DR    + P  H  L+    +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLG--VDRIVDTVLPAIHPSLKF-TAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +L AK+P F EGVN++ A     ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK 288
           +  G W +
Sbjct: 296 LLAGDWQQ 303


>gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14]
 gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
          Length = 269

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 28/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++              I  L   +    D  + +   + A  DA + I N D
Sbjct: 15  YSGTGNSFIL-----GEFIPPLQHIVFLCQKEKV--DGFLCVEPSEIA--DAKLTIFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GSE   CGNG+RCV+  +   +  +  + ET+RG+   K      + VDM   +LDWK  
Sbjct: 66  GSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDMT--LLDWK-- 121

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                  K  +   H+ P         F +  G PH + FV  D+    +  +G  L  H
Sbjct: 122 -------KTKKTLTHVLP---GMPEEVFFIDTGVPHVVVFVP-DVNKVPVQEWGAFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS- 247
             F   GVN+   +    ++L + T+ERG    T +CG+   AS + +  +    +  S 
Sbjct: 171 EDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAADVFSLEQDFSL 230

Query: 248 -VKMLGGGLLIEWHDNNHVFMTGEAKK 273
            V    G ++  + +N  VF+ G    
Sbjct: 231 LVCSRSGNIVKIFSENGKVFLEGPVTL 257


>gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864]
          Length = 376

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 125/368 (33%), Gaps = 95/368 (25%)

Query: 11  MEGIGNKILVIDMRGCHDNITS----------------------DAINALSTDDNTHFDQ 48
           M G GN  +V++        T+                      D        +    DQ
Sbjct: 1   MTGCGNDFVVLEASDLESLETASTGFGVTATTASGSGQAMLDKTDIRAMCDRRNGIGCDQ 60

Query: 49  IMLIHD--------FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--------- 91
           +++I                   ++I N DGSE  +CGN  RCV +    R         
Sbjct: 61  LLVIAAQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDARRE 120

Query: 92  ----MKRKSFTFETIRGILVAKENRDGS--------------------ISVDMGEPILDW 127
                  +     T    L      D S                    + VDMG P  +W
Sbjct: 121 QVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPEFEW 180

Query: 128 KLIPLAR------SFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFV--EDDLYHY 178
             IPL+R      + D +        P +    L     V MGNPH +F +  E+ L   
Sbjct: 181 TRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARGVAVGMGNPHLVFLLPSEEQLNQI 240

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARV----------TSLESLDLRTWERGVGLTAACG-- 226
           D+ + G+ L  + +F +GVN++ A +           +   +  + WERG G T ACG  
Sbjct: 241 DVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLACGSA 300

Query: 227 ----------SAACASVVASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
                     +    +  A+   +  N++V SV+M GG L +       + + G ++  +
Sbjct: 301 ACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPSRVVF 360

Query: 276 EGKLDIKT 283
            G     +
Sbjct: 361 VGVYSPPS 368


>gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 286

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 110/304 (36%), Gaps = 46/304 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + FAK  G  N  ++++       +  + + AL         D ++ +   +        
Sbjct: 1   MKFAKGHGTENDFVIVEDHAAATPLAPERVAALCDRRAGIGGDGLLRVVRAEALLAAGEI 60

Query: 58  -------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
                  A  D F+   N DGS  + CGNG R    +L SR  ++   FT  T  G    
Sbjct: 61  EALAEGIAPTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRV 120

Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +    +   ++V+MG               +        +   ++  L     V MGN
Sbjct: 121 TVHSCDEQAAEVTVEMGPA-------------EVTGVSTASMAGESYAGLG----VDMGN 163

Query: 165 PHAIFFVED-DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           PH    V   D       +F   +     F  GVN+ +        + +R +ERGVG T 
Sbjct: 164 PHLAAVVPGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETR 223

Query: 224 ACGSAACASVVASGCLHKTN------RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +CG+   A+  A+      +        V V + GG + ++ ++     +TG +     G
Sbjct: 224 SCGTGTVAAATAALADAAVDHTTTPHGTVHVHVPGGEVTVDIYEGGS-RLTGPSAIVATG 282

Query: 278 KLDI 281
           +  +
Sbjct: 283 ETSL 286


>gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003]
          Length = 303

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 19/267 (7%)

Query: 32  SDAINALSTDDNT--HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
           +D    L    ++    D I+ +    +A     +R++N DGS    CGNG+R V R+L 
Sbjct: 9   ADFAIKLCDRKHSLGGADGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLL 68

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD----KMDRDRFH 145
            +        ET++ IL  K+    + S+    P    ++ P+  + +     +  ++  
Sbjct: 69  EKHALTEAKVETMKAILDVKK----ATSLGFDIPTYQVEISPVKFNAESLPMNVGVEKLF 124

Query: 146 IGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIA 202
              V  L     F  VS+ NPH I FV+  +   D   +  + L +++P F +GVN+S  
Sbjct: 125 NQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLNSENPYFPDGVNVSFV 184

Query: 203 RVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWH 260
           +  S +++ +RT+ERGVG T ACG+A  A  +    L K      ++V   GG + +   
Sbjct: 185 KRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNVYNDGGRVQVTAK 244

Query: 261 DNN----HVFMTGEAKKEWEGKLDIKT 283
            +      + + G A     G ++ ++
Sbjct: 245 KDEAGDISLQLIGNATFVSTGSVNYES 271


>gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
 gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
          Length = 299

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 108/308 (35%), Gaps = 52/308 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   QD          
Sbjct: 8   YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108
                  + F+   N DGS  + CGNG R +  F     L  R   + F   T  G+ + 
Sbjct: 68  DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKIL 127

Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
               +          V+MG             S+ + D D + +             V M
Sbjct: 128 TSLGEVEGLGKDVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDM 174

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLR 213
           GNPH +  +ED           +L+AK    P      N+   R+             +R
Sbjct: 175 GNPHVVAVIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMR 234

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
             ERG G T +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A  
Sbjct: 235 VNERGCGETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATI 292

Query: 274 EWEGKLDI 281
              GK+++
Sbjct: 293 V--GKVEL 298


>gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 331

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 107/322 (33%), Gaps = 68/322 (21%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K  G GN  +++       ++ ++A+ ++         D ++ +               
Sbjct: 12  TKAHGTGNDFILVPDFAGTLDLPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVARD 71

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAKEN 111
               + F+   N DGS  Q CGNG+R  V +L           +S T  T  G+     +
Sbjct: 72  FPEAEWFMDYRNADGSIAQMCGNGLRVFVHYLRIQGVIDLKPGRSVTVATRGGVKAVSFD 131

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                ++DMGE  L           D  D  R  +  V     R    V+M NPH +  +
Sbjct: 132 GA-VYTIDMGEYGLPRG--------DAGDDTRVAVPGVGE---RPALSVTMPNPHTVVLL 179

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-------------------- 211
            D       A         P+  EG NL +      + +                     
Sbjct: 180 -DSAEELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRA 238

Query: 212 ----------------LRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGG 254
                           +R  ERGVG T ACG+  CA+ +A      +    V ++  GG 
Sbjct: 239 DQGLADRSVSPSNPALMRVLERGVGETLACGTGTCAAALAVLLSRGEREGEVRLRSPGGP 298

Query: 255 LLIEWHDNNHVFMTGEAKKEWE 276
           L +   +    F+TG A    E
Sbjct: 299 LTVRI-EGGRAFLTGPAVLVAE 319


>gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228]
 gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228]
          Length = 249

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 104/277 (37%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F       +    F T  G++ A    + S+ V +G+  
Sbjct: 58  FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANV-DNNSVEVSLGKI- 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K I  A S  +                +N  +   G PH + F E+ L  +DL    
Sbjct: 116 ---KNIQDAFSECE----------------KNWQLCDTGVPHLVHFCEN-LDEFDL---- 151

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             L K        N++  +V +  +L +RT+ERGV   T ACG+   A    +    K +
Sbjct: 152 -KLCKQMREKYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               V    G  L    +N  +F  G+ +  +E   +
Sbjct: 211 NQARVIPKSGEELSFKFENEELFFKGKVRYCFEANYN 247


>gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945941|gb|EEG27150.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 307

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 108/307 (35%), Gaps = 50/307 (16%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + + F K  G  N  +++       ++T   I  L         D I+ +          
Sbjct: 14  TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 73

Query: 53  ---HDFQDASV----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103
              ++          D F+   N DGS  + CGNG R    ++ SR  +    FT  T  
Sbjct: 74  LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 133

Query: 104 G----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           G    I+ + ++ +  +SV MG                 +      +G   +        
Sbjct: 134 GAKPVIVHSFDDDNAVVSVAMGPAT-------------SLGESTCSMGGRMYA----GMG 176

Query: 160 VSMGNPHAIFFVEDDLYH--YDLASFGNLLAKHPMFSEGVNLSIAR--VTSLESLD--LR 213
           V MGNPH    V         DL            F EGVN+ +    V S E     +R
Sbjct: 177 VDMGNPHLACVVPGLTAEALADLTLDRPEFDT-EFFPEGVNVEVLTELVHSPEGYRTHMR 235

Query: 214 TWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +ERGVG T +CG+    A+  A       N  V V++ GG + +    +    + G + 
Sbjct: 236 VYERGVGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSA 294

Query: 273 KEWEGKL 279
               G+L
Sbjct: 295 LVATGEL 301


>gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977]
 gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium
           abscessus]
          Length = 295

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 109/302 (36%), Gaps = 45/302 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           + F K  G  N  +V+       +++  A+ AL         D ++ +            
Sbjct: 1   MKFTKGHGTQNDFVVLPDVHIKRDLSVAAVQALCDRQRGLGADGVLRVTTVGAALEGGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  +S D F+   N DGS  + CGNG+R    +L       R  F   ++ G    
Sbjct: 61  AEKPAGVSSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           + N        ++VDMG                +       +G      L     + +GN
Sbjct: 121 RINSWSQLTADVTVDMGPVK-------------EFGAGEAIVGGRRFSGL----AIDVGN 163

Query: 165 PH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGV 219
           PH   +  V        L     +     +F +GVN+ +    S     ++ +R  ERGV
Sbjct: 164 PHLACVDAVLTTEQLRILDVGAPVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGV 223

Query: 220 GLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+  A+   + +    V V + GG + +     +  F+ G +    +G+
Sbjct: 224 GETRSCGTGTVAAAYAALRHIGQRTGEVVVNIPGGQVRVTVTGESS-FLRGPSMLLADGE 282

Query: 279 LD 280
           + 
Sbjct: 283 IS 284


>gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1]
          Length = 284

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 30/285 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD---NTHFDQIMLIHDFQDASVD 61
           M+D  KM G GN  LV+D      + ++ A  A +      +   D ++ +   + A+  
Sbjct: 1   MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAA-- 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC  RF   R +  +  TFET  G + A    +  +++D+
Sbjct: 59  FRMRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFETRGGDVHAVVRGN-RVALDL 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-EDDLYHYD 179
                   ++    S +  D                   + +G PHA+ F  E      +
Sbjct: 118 APVSTGSAVLKAHASVEGCD--------------FTYAFLVVGVPHAVIFERERRRSIAE 163

Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLE--SLDLRTWERGV-GLTAACGSAACASVVA 235
            A  G  L  +  +F  G N++ A ++S +  +LD+ T+ERGV  +T +CG+ + AS +A
Sbjct: 164 YAVLGRALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAIA 223

Query: 236 SGCLHKTNRAVSVKMLGG--GLLIEWHDNNHV--FMTGEAKKEWE 276
              L      V V   GG   + + W + + V   + G A    E
Sbjct: 224 GRLLGVVGDEVRVVNPGGVNDVSLTWIETDVVQPRLEGGALMIAE 268


>gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 299

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 9   AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V +D  G ++    +             D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108
                + D F+   N DGS  + CGNG R +  F        +   + F   T  G+ V 
Sbjct: 68  VCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D      +G+ +   ++     S+ + D D + +             V MGNPH +
Sbjct: 128 TSLGDVPT---LGKDVFQVEM----GSWKRGDLDGYEVTIPGTAGSARGTFVDMGNPHVV 180

Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGV 219
             +ED           +L+ K    P      N+   R+       +  +  +R  ERG 
Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSEGDNEGNATMRVNERGC 240

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G T +CG+  CA+ +        +   ++ + GG L ++  DN+ V +TG A     GK+
Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDND-VKLTGSATIV--GKI 296

Query: 280 DI 281
           ++
Sbjct: 297 EL 298


>gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
          Length = 247

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 101/273 (36%), Gaps = 33/273 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  AK    GN  ++       D  +  A            D ++++        D   +
Sbjct: 1   MQIAKYNASGNDFVIFHTFHETDR-SQLAQVLCHRQKGVGADGLIVLLPH--GEYDFKWQ 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGSE   CGNG R    +  ++    K   F T  G++ ++      +  ++  P 
Sbjct: 58  FYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAGVIASEVIE-CVVETELTTPK 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +      L+ SF++                        G PH + FVE      D+A F 
Sbjct: 117 V------LSESFEENGL--------------TWHFCDTGVPHLVTFVE------DVALFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +A+   +    N++ A      +L +RT+ERGV   T ACG+   A   ++    +  
Sbjct: 151 KTIARQMRYKYNANVNYAM-LKENTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRVG 209

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            +  V    G  L    ++  +F  GE +K +E
Sbjct: 210 ESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFE 242


>gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
 gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
          Length = 299

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 108/308 (35%), Gaps = 52/308 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   QD          
Sbjct: 8   YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108
                  + F+   N DGS  + CGNG R +  F     L  R   + F   T  G+ + 
Sbjct: 68  DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRGGVKIL 127

Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
               +          V+MG             S+ + D D + +             V M
Sbjct: 128 TSLGEVEGLGKDVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDM 174

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLR 213
           GNPH +  +ED           +L+AK    P      N+   R+             +R
Sbjct: 175 GNPHVVAVIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMR 234

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
             ERG G T +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A  
Sbjct: 235 VNERGCGETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATI 292

Query: 274 EWEGKLDI 281
              GK+++
Sbjct: 293 V--GKVEL 298


>gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 151

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
             +++  +   +       +     VSMGNPHAI ++ DD+ H D+   G     H  F 
Sbjct: 3   EKEEVINEPLDVNGK----IYYITAVSMGNPHAIVYM-DDIDHLDIEKIGPAFENHVAFP 57

Query: 195 EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLG 252
           + VN     V    ++ +R WERG G T ACG+ ACA  VAS        +  V+VK+LG
Sbjct: 58  DRVNTEFVEVIDEHTVKMRVWERGSGETLACGTGACAVAVASVLNGHVDGDSPVTVKLLG 117

Query: 253 GGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           G L I W    N V+MTG A   ++G++D+
Sbjct: 118 GDLQIFWNRQENLVYMTGPAATVFDGEIDV 147


>gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
 gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
          Length = 317

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 118/281 (41%), Gaps = 23/281 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K+ G  N   + +     D+    AI   + D     D I++I     A   A +R
Sbjct: 3   MTLIKVHGSMNTFYMFEG-EERDDYARLAIQLSALDKKI--DGILVILPS--AVAHAKMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGSE   CGNG+RCV R++  R   +    ET++  L  K+      +++ G    
Sbjct: 58  VFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASLRVKKEE----TLNEGIETY 113

Query: 126 DWKLIPLARS-----FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL--YH 177
             ++ P++ S        +D   +   P+  +    PF  VS+ NPH I  V ++L    
Sbjct: 114 AVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAVSVPNPHLIGIVPEELQKDT 173

Query: 178 YDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                +      ++  F +GVN+S         + +RT+ERGVG T ACG+A  AS + S
Sbjct: 174 SHQQKWAQQFNGENKYFPDGVNVSYVTPVERG-IFVRTYERGVGFTNACGTAMTASALIS 232

Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273
                     VSV   GG +            + +TG A  
Sbjct: 233 CMAGLVPFGEVSVYNPGGLVKCSVRKEGETIQLQLTGNATY 273


>gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 254

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 107/282 (37%), Gaps = 35/282 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   K+ G GN  LV         +    + AL         D ++ +           +
Sbjct: 1   MRLTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHDA------M 54

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DGS  +  GNG+RC+   +T         FET  G  + +       SV      
Sbjct: 55  VLYNADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGREGGSV------ 108

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI--FFVEDDLYHYDLAS 182
                                +GPV+       + V  GNPH +       +L   D+AS
Sbjct: 109 ----------------LGATTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVAS 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  + +GVN+  A V + + + +R +ERGVG T ACG+ + A  VA       
Sbjct: 153 LGRCAQAH--YPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLV 210

Query: 243 NRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            R  V V+  GG L +E  +   V + G ++      +D++ 
Sbjct: 211 ERTSVRVRNPGGALTVEVTEPEPV-LVGPSRLVASVDVDVEA 251


>gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266]
 gi|305658898|gb|EFM48398.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 50/307 (16%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + + F K  G  N  +++       ++T   I  L         D I+ +          
Sbjct: 12  TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 71

Query: 53  ---HDFQDASV----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIR 103
              ++          D F+   N DGS  + CGNG R    ++ SR  +    FT  T  
Sbjct: 72  LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 131

Query: 104 G----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           G     + + ++ +  +SV MG                 +      +G   +        
Sbjct: 132 GAKPVTVHSFDDDNAVVSVAMGPAT-------------SLGESTCSMGGRMYA----GMG 174

Query: 160 VSMGNPHAIFFVEDDLYH--YDLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLR 213
           V MGNPH    V         DL            F EGVN+ +    +         +R
Sbjct: 175 VDMGNPHLACVVPGLTAEALADLTLDRPEF-DAEFFPEGVNVEVLTELAHSPEGYRTHMR 233

Query: 214 TWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +ERGVG T +CG+    A+  A       N  V V++ GG + +    +    + G + 
Sbjct: 234 VYERGVGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSA 292

Query: 273 KEWEGKL 279
               G+L
Sbjct: 293 LVATGEL 299


>gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
 gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
          Length = 291

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 107/299 (35%), Gaps = 38/299 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH-------- 53
           SS + FAK  G  N  +V+       +++   + A+         D ++ +         
Sbjct: 2   SSGIRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAGPD 61

Query: 54  -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILV 107
                  V+ F+   N DGS  + CGNG+R   R+L                 T  G+  
Sbjct: 62  VPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEALLPDGPGAELALGTRGGVRT 121

Query: 108 AK----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            +    +  DG +SV MG          +        R   + G            V +G
Sbjct: 122 VRFAGGDGADGEVSVGMGVAR-------VGDESTATVRGHAYAG----------VAVDVG 164

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           NPH       D         G      P +F  GVN+      S + + +R  ERGVG T
Sbjct: 165 NPHLACVTAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGVGET 224

Query: 223 AACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +CG+   A+VVA+      +R  V V   GG L +    +    + G A     G++D
Sbjct: 225 RSCGTGTVAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGEID 283


>gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
 gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
          Length = 299

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 40/302 (13%)

Query: 9   AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIML--------------IH 53
            K    GN  +V +D  G H+    +             D ++               I 
Sbjct: 8   YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108
           D      D F+   N DGS  + CGNG R +  F        +   K F   T  G+ + 
Sbjct: 68  DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVKIL 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D      +G+ +   ++     ++ + D D + +             V MGNPH +
Sbjct: 128 TSLGDVP---GLGKDVFQVEM----GAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVV 180

Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGV 219
             +ED           +L+ K    P      N+   R+             +R  ERG 
Sbjct: 181 AVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGC 240

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G T +CG+  CA+ +        +   ++ + GG L ++  D + V +TG A     GK+
Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKI 296

Query: 280 DI 281
           ++
Sbjct: 297 EL 298


>gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
 gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
          Length = 235

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 48/278 (17%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           + F KM+  GN  +V++ +       T   +  ++        DQ++++   Q    DA 
Sbjct: 4   LPFYKMQAQGNDFVVLNGLTSTLPEFTEAWVRRITERRYGIGCDQLLVLE--QSDKADAA 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           IRI N DGSE  +CGNG+RCV + L   + ++         I+ A+   +G I V+MG  
Sbjct: 62  IRIFNNDGSEAANCGNGLRCVGQLLIELLGKEFVLIALKDRIVRAEAGING-ICVEMGPA 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +                                  + +GN H +FF             
Sbjct: 121 TV-------------------------INSTDAHVDIDIGNQHRVFF------------- 142

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
                    F   +N+ I        + +   ERG G T ACGS ACA+  A        
Sbjct: 143 ----EATEAFPSDLNVEIVTGQIANHVYIDIIERGAGRTLACGSGACATAAAIWYSEGEV 198

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R ++++M GG + +     N V + G   + + G   I
Sbjct: 199 RPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235


>gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
          Length = 299

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 107/302 (35%), Gaps = 40/302 (13%)

Query: 9   AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIML--------------IH 53
            K    GN  +V +D  G H+    +             D ++               I 
Sbjct: 8   YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108
           D      D F+   N DGS  + CGNG R +  F        +   K F   T  G+ V 
Sbjct: 68  DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIADQPGGKPFHLGTRAGVKVL 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D      +G+ +   ++     ++ + D D + +             V MGNPH +
Sbjct: 128 TSLGDVP---GLGKDVFQVEM----GAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVV 180

Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGV 219
             +ED           +L+ K    P      N+   R+             +R  ERG 
Sbjct: 181 AVLEDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGC 240

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G T +CG+  CA+ +        +   ++ + GG L ++  D + V +TG A     GK+
Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKI 296

Query: 280 DI 281
           ++
Sbjct: 297 EL 298


>gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
 gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
          Length = 382

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 4/155 (2%)

Query: 132 LARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           +A +  +M  D     P +         +VSMGNPHA+  V DD+    +   G L+A H
Sbjct: 227 MASADRQMIGDATPETPAHGTTATVWLVIVSMGNPHAVQLV-DDVERAPVPEIGPLIANH 285

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F++ VN    +V     + LR +ERG G T ACGS ACA+V A   L   +  V V M
Sbjct: 286 ARFAQRVNAGFMQVVDRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAM 345

Query: 251 LGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKT 283
            GG + + W     + V MTG A   +EG++++ +
Sbjct: 346 RGGLVSVAWSGAATDSVVMTGPATTVFEGQIELPS 380



 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           ++  + F KM+G GN  +V+D       +++     L+        DQI+ +     A +
Sbjct: 33  RAMQIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQILGVRPAPAADI 92

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DGSEV  CGNG RC+ RF+  +    ++    +T  G++  + N DG +SV
Sbjct: 93  DFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSV 152

Query: 119 DMGEPILDWKLIPLARS 135
           DMG    +   +P   S
Sbjct: 153 DMGRAQFEPASLPFDAS 169


>gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 292

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 108/310 (34%), Gaps = 52/310 (16%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57
           + + F K +G GN  ++         +++  I  +         D ++     +      
Sbjct: 2   ATLHFTKGQGTGNDFVLYADPDGTLPLSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGA 61

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGIL 106
                  + + F+   N DGS  + CGNG+R  VR+L            +    T  G+ 
Sbjct: 62  EALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYLIESRLVQLADGDTLPIGTRSGVR 121

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
             +    G   VD+G   L     PL R+ +                 R    + +GNPH
Sbjct: 122 DVQRTLSG-FQVDLGRWRLAGGE-PLVRAKE-------------LPVARLGLGIDLGNPH 166

Query: 167 AIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218
            +  + D+  L   DL      L   P    G N+                + +R  ERG
Sbjct: 167 VVVALADESELESADLTYI-PHLEPAPQ--GGANVEFVVPHEPLVKDGVGRIRMRVHERG 223

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVS----VKMLGGGLLIE---WHDNNHVFMTGEA 271
            G T +CG+ A  +  A    H           V + GG + +      D  HV ++G A
Sbjct: 224 SGETLSCGTGA--AAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPA 281

Query: 272 KKEWEGKLDI 281
           +  + G L++
Sbjct: 282 ELVYTGALEL 291


>gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184295|ref|ZP_06043716.1| diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
 gi|254767098|sp|C3PGX6|DAPF_CORA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|227454327|gb|ACP33080.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
          Length = 278

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 112/300 (37%), Gaps = 46/300 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++++  G    +  + + AL         D ++ I            
Sbjct: 1   MKFAKGHGTENDFVIVEGTG---PLPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEI 57

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                   + D F+   N DGS  + CGNG R    ++ SR   +  +FT  T  G    
Sbjct: 58  DELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLLEEDTFTVGTRAGAKQV 117

Query: 109 KEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +     +  +SV+MG   +      L  S   M  + F               V MGN
Sbjct: 118 TVHSFSETEAEVSVEMGPAQV------LGVSTASMAGESFA-----------GLGVDMGN 160

Query: 165 PHAIFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH    +   L   DLA       +     F  GVN+ +        + +R +ERG G T
Sbjct: 161 PHLAAVIPG-LTAEDLAAKRLEQPVFDADFFPAGVNVELVTPLCDGVIHMRVFERGSGET 219

Query: 223 AACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+   A+  A+     +    V V + GG + +E  ++    +TG ++    G+  +
Sbjct: 220 RSCGTGTVAAACAALADASQVTGHVRVIVPGGEVEVEITEDGS-TLTGPSRIVATGETSL 278


>gi|290988396|ref|XP_002676907.1| predicted protein [Naegleria gruberi]
 gi|284090512|gb|EFC44163.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 126/383 (32%), Gaps = 107/383 (27%)

Query: 6   VDFAKMEGIGNKILVI------------DMR---GCHDNITSDAINALSTDD-NTHFDQI 49
           + F KM G+GN  + I            D R       N+    I  L         D +
Sbjct: 22  ITFCKMHGLGNDYIYINCCNLLHSSEANDFRIYLNHQHNLIEYCIQKLCHRTFGIGADGV 81

Query: 50  MLIHDFQDASVD----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFT 98
           + I +     ++            + + N DGS  + CGNG+RCV +F   R ++     
Sbjct: 82  IFITNPTPELLENETNHHQIIHCQMEMYNSDGSSGEMCGNGLRCVAQFACDRLVESGKIK 141

Query: 99  FETIRG-----ILVAKENRDGS--------------------ISVDMGE---PILDWKLI 130
            +T+ G      +  + NR                       + ++MG      +++   
Sbjct: 142 KQTLEGGQLGYRINVQSNRGKRLYQCICYEDRSTFSKSSPLMVEIEMGNLQTKSVNFSFE 201

Query: 131 PLARSFDKMDRDRFHIGPV---NHLFLRNP-FVVSMGNPHAIFFVED------------D 174
             + S + ++++   I  +    +L    P + + + NPHAI +V +             
Sbjct: 202 NNSNSIEYVEQEENSIRKIIFKQYLDCEIPLYCLLVPNPHAICWVNEISSQNEIDNTMKA 261

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESL-------------------DLRT 214
           +  + L + G ++     +F    N+      S + +                     RT
Sbjct: 262 VDSFPLHTIGPIIENLKQLFPNRTNVEFIETISAQHIETNDSPLIKSLKSNCILSARQRT 321

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNR---------AVSVKMLGGGLLIEWHDNNH- 264
           WERG G T ACG+ A A        +              V + + GG L   +H +N  
Sbjct: 322 WERGSGETNACGTGAFAVSQVLYLRNAITNSIGNIPNTATVRISLNGGDLWFRYHKSNPT 381

Query: 265 ------VFMTGEAKKEWEGKLDI 281
                 V M G       G   +
Sbjct: 382 SLDHIQVNMIGSVNYSHTGSFKL 404


>gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis]
          Length = 205

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 90/231 (38%), Gaps = 29/231 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K +G GN  ++ID R    +I      A             LI        D  +
Sbjct: 1   MIHFWKYQGAGNDFIMIDDRDATFDINDHEKVAFLCHRRFGVGGDGLILIRLKEGYDFEM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123
              N DG     CGNG RC VRF  +     + T F    G   A  +    + + M  P
Sbjct: 61  VYFNADGHVGTMCGNGGRCAVRFAHTLGLFDTTTSFWAADGAHEATLDEQQLVHLKMNPP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                 I         + + +  G+PH + F E DL ++D  + 
Sbjct: 121 ------------------GEIEINA-------DHYFMDTGSPHYVRF-EKDLDNFDCVTE 154

Query: 184 GNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           G  +  +  F  EG N++ A+VT  +SL +RT+ERGV   T ACG+   A 
Sbjct: 155 GKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGVTAC 205


>gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
 gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
          Length = 246

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 102/277 (36%), Gaps = 34/277 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  + I       +  ++AI   +  +    D  +++    +A  D    
Sbjct: 1   MTYTKYSASGNDFI-ISHSFIEKDYKAEAIKLCNRTEGIGADGFVVLVPSSEA--DFKWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
             N DGS+   CGN  R V  +      +      F T  GI+ A    D          
Sbjct: 58  FYNSDGSDASMCGNATRAVTHYAYTNGLINTNQARFLTGAGIIKAVVEND---------- 107

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                ++    +  K+  + F              +V  G PH +  V+      DL  +
Sbjct: 108 -----IVETQLTKAKVINEEFSEDG------FIWHLVDTGVPHLVTIVD------DLNLY 150

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
            + L     +    N++ A++ +  ++ +RT+ERGV G T ACG+   AS + +  L   
Sbjct: 151 NHELCAKMRYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           N    V    G  L     +N ++  G  KK +   L
Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKKVFTVTL 246


>gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
 gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 285

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 14/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +DF K    GN  +V+D      +   + +  +         D ++        +    +
Sbjct: 1   MDFVKYTAQGNDYIVLDPNKMAMDFDVELVRKICDRRTGIGADGVLY--GPHLNNGKLGL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISVD 119
            + N DGS     GNG+R   R+L      +S +FE       + I V +        V 
Sbjct: 59  EVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLVS 118

Query: 120 MGEPILDWKLIPLARSFDKMD-RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +G   LD   +P+     K    +  HI             V +GNPH +   +      
Sbjct: 119 LGSFCLDSSKVPVMMDAKKTVLNETLHIAGREISI----SCVDIGNPHCVVLGQ-AADRA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G L+++H +F +  N+    + S   +++ TWERG G T A GS+ACA+      
Sbjct: 174 TAELLGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAVCHT 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           L   +  V+V M GG + +    ++ + + G     + G
Sbjct: 234 LGLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG 272


>gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 266

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 109/285 (38%), Gaps = 30/285 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
             ++F K  G  N  +V+        ++   + AL         D ++ + +        
Sbjct: 1   MKIEFLKGHGTENDFVVVPDPADALTLSEAEVAALCDRRAGIGGDGLLRVVEHD---GRW 57

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSI 116
           F+   N DGS  + CGNG+R     L +   +  + F  +T  G+   +     + D ++
Sbjct: 58  FMDYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQADSTDATV 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175
            V MG   ++   +  AR  D               F      V +GNPH    +     
Sbjct: 118 KVGMGR--VEVTGVSTARMGD---------------FDFAGLGVDVGNPHLAAVIPGLTA 160

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D   F      H  F EGVN+ +    +   + +R WERGVG T +CG+   A+  A
Sbjct: 161 AELDAMQFAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARA 220

Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +          V+V + GG + +E   +    MTG +K    G +
Sbjct: 221 ALADAGVENGTVTVNVPGGAIEVELS-DGEALMTGPSKIVARGTV 264


>gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
 gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
          Length = 246

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 34/277 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  ++       D  T +AI   +  +    D  +++    ++  D    
Sbjct: 1   MTYTKYSASGNDFIISHSFIEKDYKT-EAIKLCNRTEGIGADGFVVLVP--NSEADFKWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
             N DGS+   CGN  R V  +      + R    F T  GI+ A    D          
Sbjct: 58  FYNSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGIIKAVVEND---------- 107

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                ++    +  K+  + F              +V  G PH +  V+      DL  +
Sbjct: 108 -----IVETQLTKAKVINEEFSEDG------FIWHLVDTGVPHLVTIVD------DLNLY 150

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
            + L     +    N++ A++ +  ++ +RT+ERGV G T ACG+   AS + +  L   
Sbjct: 151 NHELCAKMRYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKLV 209

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           N    V    G  L     +N ++  G  KK +   L
Sbjct: 210 NDTTFVYPKSGEELTLSIKDNTIYFKGAVKKVFTVTL 246


>gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
 gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
          Length = 321

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 109/306 (35%), Gaps = 40/306 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------LIHDFQDA--S 59
            K  G  N  +++D R    ++    +  L         D ++      L+ D  D    
Sbjct: 22  TKGHGTQNDFVLLDDRDGALDLAPVLVRRLCDRRAGVGGDGVIRLVASELVPDAPDDARG 81

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILV-----AKE 110
              F+   N DGS  Q CGNG+R   R+                 T  G+        + 
Sbjct: 82  TAWFMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEV 141

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                 +V MG   L      LA   D       H+G +     R    V +GNPH +  
Sbjct: 142 GDGPWFTVGMGVVTLVGGDDALASGGDA----EVHVGGL--AVTRPGLSVDVGNPHTVVV 195

Query: 171 V--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGV 219
           +  E DL   DL +   ++   P+ ++G N+ +      E          + +R  ERGV
Sbjct: 196 LAQEGDLEQADL-TSAPVVR--PVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGV 252

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           G T +CG+ A A+  A              V + GG + +  H +    + G A    E 
Sbjct: 253 GETRSCGTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEA 312

Query: 278 KLDIKT 283
           ++D+  
Sbjct: 313 RVDLAA 318


>gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
 gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
          Length = 314

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 111/312 (35%), Gaps = 53/312 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + F+K  G GN  +++        I +  + AL         D ++     +        
Sbjct: 19  LRFSKGHGTGNDFVLVADPEGEHTIDAGHVAALCNRHLGIGGDGLIRAVPSRFLPEGREI 78

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVA 108
              +   + F+   N DGS  + CGNG+R  V FL +          +    T  G+   
Sbjct: 79  LAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLKTV 138

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               DG  +VDMG     +     A++ D +      +        R    VSMGNPH +
Sbjct: 139 VRTADG-YAVDMGPWEFIFPGEATAKAMDSL------VTAEGLEVPRPALSVSMGNPHTV 191

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L   +        A  P+ + G N+     +         S+ +R  ERGVG T
Sbjct: 192 VALA-ELGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERGVGET 250

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKM--------------LGGGLLIEWHDNNHVFMT 268
            +CG+ ACA+ VA           + ++               GG        + HV ++
Sbjct: 251 QSCGTGACAAAVAIRHWAGAGAPDAWRVNVPGGVVGVKFFAGPGG--------HEHVELS 302

Query: 269 GEAKKEWEGKLD 280
           G A     G L 
Sbjct: 303 GPAVIVASGTLS 314


>gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 292

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 115/308 (37%), Gaps = 52/308 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQ------- 56
           + F K +G GN  ++        ++T   + AL         D  +  +   +       
Sbjct: 4   LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAA 63

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108
              D   + F+   N DGS  + CGNG+R    FL           ++    T  G+   
Sbjct: 64  LDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTVPIGTRAGVRDV 123

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           + +  G   VD+G   L     PL R+ D                 R    + +GNPH +
Sbjct: 124 QRSGSG-FQVDLGRWALAGGE-PLVRAKD-------------LQVARPGLGIDVGNPHVV 168

Query: 169 FFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220
             +  ED+L   DLA F   L   P   EG N+ +              + +R  ERG G
Sbjct: 169 VALSSEDELAEADLA-FAPQLDPEPA--EGANVELVVPADPLIVDGVGHITMRVHERGSG 225

Query: 221 LTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIE---WHDNNHVFMTGEAKK 273
            T +CG+ A  +  A    H    A      V++ GG L +      D  HV ++G A+ 
Sbjct: 226 ETLSCGTGA--AAAALAIRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAEL 283

Query: 274 EWEGKLDI 281
            ++G + +
Sbjct: 284 VFDGVVAL 291


>gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 298

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 120/310 (38%), Gaps = 52/310 (16%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           + ++ + FAK  G  N  ++++      ++ +D + AL         D ++ +   Q   
Sbjct: 4   ISTASLPFAKGHGTENDFIIVNDPEGKISLDADRVAALCDRRAGIGADGLLRVIRAQALV 63

Query: 58  ------------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----------KR 94
                       A  D F+   N DGS  + CGNG R    ++ ++            K 
Sbjct: 64  DNGEIDELAEGIAGDDWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKG 123

Query: 95  KSFTFETIRG----ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN 150
            SFT  T  G     + A ++R   +SV+MG P +      +  S  +M           
Sbjct: 124 ISFTVGTRAGAKPVTVHACDSRRADVSVEMGVPEV------MGLSTAQM----------- 166

Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLE 208
             F      V MGNPH    +   L    LA       +     F  G+N+ +       
Sbjct: 167 AGFFYAGLGVDMGNPHLAATIPG-LDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDG 225

Query: 209 SLDLRTWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM 267
            +++R +ERGVG T +CG+    A+V A         +V+V + GG + +E  ++    +
Sbjct: 226 EVNMRVFERGVGETRSCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGS-TL 284

Query: 268 TGEAKKEWEG 277
            G ++    G
Sbjct: 285 RGPSEIVATG 294


>gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
 gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
          Length = 265

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 103/284 (36%), Gaps = 34/284 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K +  GN  L+++ +       + AI           D +  +   +       IR
Sbjct: 1   MQFVKADACGNDFLIVEGKAD----AALAIALCQRHTGVGADGVEFLE--KTGPHSGTIR 54

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISV---- 118
           ++N DGS  +  GNG RCV  ++          + T  T  G    +             
Sbjct: 55  LVNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMAT 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DL 175
            MG P +   ++ L +                        VV  GNPH +  V+     +
Sbjct: 115 GMGVPTVRHGMVKLPQG-----------------ITVEGSVVHTGNPHFVIEVQSGDFTV 157

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             +D    G  +  HP F    N+         ++ +R +ERGVG T + G+  CAS  A
Sbjct: 158 QGHDWREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAA 217

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
           +    +    + V   GG   +EW      + +TG A+   +G+
Sbjct: 218 TIAAARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261


>gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
          Length = 299

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 109/302 (36%), Gaps = 40/302 (13%)

Query: 9   AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V +D  G ++    +             D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVA 108
                + D F+   N DGS  + CGNG R +  F        +   + F   T  G+ V 
Sbjct: 68  VCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D      +G  +   ++     S+   D D + +             V MGNPH +
Sbjct: 128 TSLGDVP---ALGNDVFQVEM----GSWKCGDFDGYEVTIPGTAGSARGTFVDMGNPHVV 180

Query: 169 FFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGV 219
             +ED           +L+ K    P      N+   R+       +  S  +R  ERG 
Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVRIDEQSEGDNEGSATMRVNERGC 240

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G T +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A     GK+
Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDDD-VKLTGSATIV--GKI 296

Query: 280 DI 281
           ++
Sbjct: 297 EL 298


>gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 292

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 48/306 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55
           + F K +G GN  ++        ++T   + AL         D  +              
Sbjct: 4   LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAA 63

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108
             +D   + F+   N DGS  + CGNG+R    FL           ++    T  G+   
Sbjct: 64  LEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENGLIELPPGRTIPIGTRAGVRDV 123

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           + +  G   VD+G   L     PL R+ D                 R    + +GNPH +
Sbjct: 124 QRSGSG-FQVDLGRWELAGGE-PLVRAKD-------------LQVARPGLGIDVGNPHVV 168

Query: 169 FFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVG 220
             +  ED+L   DLA     L   P    G N+ +              + +R  ERG G
Sbjct: 169 VALSSEDELAEADLAFV-PQLDPEPA--AGANVELVVPADPLVVDGVGHITMRVHERGSG 225

Query: 221 LTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIE---WHDNNHVFMTGEAKKEW 275
            T +CG+ A A+ +A+             V++ GG L +      D  HV ++G A+  +
Sbjct: 226 ETLSCGTGAAAAALATRHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELVF 285

Query: 276 EGKLDI 281
           +G + +
Sbjct: 286 DGVVAL 291


>gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 109/289 (37%), Gaps = 17/289 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALS-TDDNTHFDQIML-IHDFQDA 58
           M DF K + +GN  L++D RG           +A+  L         D ++    D    
Sbjct: 1   MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENR- 112
              A +RI N DGSE    GNG+R    +L     R+      FT  T  G    +    
Sbjct: 61  GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120

Query: 113 -DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            DG + V MG                         GP + + + +  +   G PH +   
Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGAGPGDEVTVTDLHL---GVPHTVVL- 176

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
            D +    +   G  LA HP   EG N+   RV    +LD+  WER  G   A GS ACA
Sbjct: 177 RDAIDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAGPVPASGSGACA 236

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +   +         V+V+M GG + +    +  +   G A++   G L 
Sbjct: 237 AAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVLS 285


>gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19]
 gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19]
          Length = 279

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 50/299 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           + F K+ G  N  +++D        ++   D              D ++ I   +     
Sbjct: 1   MQFWKVHGARNDFVLVDETEEEVVPESDKPDFARWACDRRSGVGADGVVFI---RSDPPS 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +RI N DGSE + CGN  RCVV+++T           T+ G    +    G I+V++ 
Sbjct: 58  VEMRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRVEVQG-GWIAVEVP 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E  +                            +   + V  G PH +   E D     + 
Sbjct: 117 EAEIK-------------------------KVVELGYEVDAGVPHFVRLTERD----PIH 147

Query: 182 SFGNLL-AKHPMFSE-----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            FG L      +FSE     GVN++ A   S++ L +RT+ERGVG T ACGS   A+ + 
Sbjct: 148 DFGGLTDEAKTIFSEYEPKGGVNVTYAAP-SVDELRVRTFERGVGWTPACGSGVVAASLV 206

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
              +      VSV+  GG L +   D     + G A+  ++G+L    G W ++N D +
Sbjct: 207 YSEIFGPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGELR---GDW-RENTDHQ 259


>gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17]
 gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17]
          Length = 311

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 20/292 (6%)

Query: 6   VDF--AKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDN-THFDQIMLIHDFQDASV 60
           + F   K  G GN   +ID R    +    A    AL+        D ++L+        
Sbjct: 1   MRFAIVKCHGSGNDFPMIDARALSLSEAEWAGVARALADRAGPVGGDGLLLLVPGDH-HA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---GSIS 117
           +  + + N DGSE ++C NG+RCV R     +   + T         A  + D   G  +
Sbjct: 60  EFGMVMRNSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYT 119

Query: 118 VD--MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           V    G   L     P+  + D++  D   +      F      V+M NPH + FVE  +
Sbjct: 120 VRETAGPAGLSTAAWPIHGAPDRLVEDVLPMLDRARRFT----AVTMPNPHLVHFVE-TV 174

Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              +L   G +    P    +  N+S   V   ++L +RT+ERGVGLT +CGSA  AS  
Sbjct: 175 DEAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAASTY 233

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           A+    +   +    V   GG +     ++  V ++G A  EW G +++  G
Sbjct: 234 AACLTGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285


>gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4]
 gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4]
          Length = 319

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 104/301 (34%), Gaps = 42/301 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLI--------- 52
           +  + F K  G  N  +++       N+    + AL         D I+ I         
Sbjct: 20  TDGIAFLKGHGTLNDFVILPDDHAELNLDETLVRALCDRRGGIGADGILRIATAGALVDR 79

Query: 53  -----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG- 104
                        D F+   N DGS  + CGNG+R     L  T R    +    T  G 
Sbjct: 80  GVLPALPDGVDPADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGP 139

Query: 105 ---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
               +V++   D  + VDMGEP L      L  S  ++    F               V 
Sbjct: 140 RPATIVSRSGDDAVVRVDMGEPRL------LGLSSAELGGRTFA-----------GVAVD 182

Query: 162 MGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           MGNPH   +    D      L            F  GVN+ IA   +   + +R  ERG 
Sbjct: 183 MGNPHLACVVPGLDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGA 242

Query: 220 GLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+     +V A     + +  V V + GG + +   D     +TG +     G+
Sbjct: 243 GETMSCGTGIVATAVAALADAGRGSGDVVVAVPGGEVEVHLADGGS-TLTGPSALVASGR 301

Query: 279 L 279
            
Sbjct: 302 F 302


>gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
 gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
          Length = 299

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 107/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF------------ 55
            K    GN  +V   +      T+D I  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
             Q    + F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  AVQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          V+MGE  +              + D + +    +        V MGN
Sbjct: 128 RGNVKPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGNDGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES------LDLRTW 215
           PH +  +ED      +    +L+ K   +P      N+   R+  ++         +R  
Sbjct: 175 PHVVAVIEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ +      KT      + + GG L ++  D + V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDED-VKLTGSATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 172

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           G+P      IP      + D D    G      ++    V+MGNP
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNP 165


>gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
 gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
          Length = 290

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 110/296 (37%), Gaps = 28/296 (9%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57
           + + F K  G  N  +++       ++T + +  L         D ++ +    +     
Sbjct: 2   TRIHFTKGHGTQNDFVLVPDESGELDLTPEQVAYLCHRHAGIGADGVIRVVRTANVPEVA 61

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                   F+   N DGS  + CGNG R    +L SR      +   F   T  G+    
Sbjct: 62  HLAPQATWFMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMV 121

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G  +VD+G+  L        R  D + +      P+  L L       +GNPH + 
Sbjct: 122 AVPRGW-AVDLGQWRLARAEEAERRGMDSVVQVHGSPDPLPALSL------DLGNPHTVV 174

Query: 170 FVEDDLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GS 227
            +   ++   L  S    +  HP   +G N+          + +R  ERG G T +C   
Sbjct: 175 ALPPSVHLSALDLSDAPHIDPHP--EQGSNVEFVHAIEHAHIGMRVHERGSGETRSCGTG 232

Query: 228 AACASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           AA A++       +    V   V +LGG L +       V ++G A    +G++D+
Sbjct: 233 AAAAALATWWWGGQPADQVDWRVDVLGGTLGVHI-KGTEVALSGPAVLVADGEIDL 287


>gi|315637930|ref|ZP_07893116.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21]
 gi|315481965|gb|EFU72583.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21]
          Length = 249

 Score =  184 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 99/273 (36%), Gaps = 32/273 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +  G   N +  A    +  +    D +++I   +    D    
Sbjct: 1   MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F        S   F +  G++ A   + G + V +GE  
Sbjct: 58  FYNKDGSRAAMCGNGSRAAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG-VEVVLGEAR 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                           ++ F        +         G PH + F E+ +  +D  +  
Sbjct: 117 --------------DVKEPFEFEGRVWQYC------DTGVPHLVHFCEN-IEEFDKKTC- 154

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L K        N++ A++   + + +RT+ERGV   T ACG+   A    +    K  
Sbjct: 155 QILRK----KYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAYLQKKLK 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V +    G  L     +  ++  G+ K  +E
Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243


>gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923]
 gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2]
 gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150]
 gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023]
          Length = 275

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P  DWK  
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDMTLP--DWK-- 121

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                  K +R   H+ P         F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
             F  EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271
           +V      L+  + +   VF+ G  
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255


>gi|57505555|ref|ZP_00371482.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195]
 gi|57016102|gb|EAL52889.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195]
          Length = 249

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 100/273 (36%), Gaps = 32/273 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +  G   N +  A    +  +    D +++I   +    D    
Sbjct: 1   MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F        S   F +  G++ A   + G + V +GE  
Sbjct: 58  FYNKDGSRAAMCGNGSRVAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG-VEVVLGEAR 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                           ++ F  G     +         G PH + F E+ +  +D  +  
Sbjct: 117 --------------DVKEPFEFGGRVWQYC------DTGVPHLVHFCEN-IEEFDKKTC- 154

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L K        N++ A++   + + +RT+ERGV   T ACG+   A    +    K  
Sbjct: 155 QVLRK----KYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAFLQKKLK 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V +    G  L     +  ++  G+ K  +E
Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243


>gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
 gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
          Length = 277

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 109/295 (36%), Gaps = 42/295 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  +  D R    ++    +AI A+    +    D ++++   Q+   D 
Sbjct: 1   MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQE-EADV 59

Query: 63  FIRIINCDGSEVQSCGNGMRCV----VRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            +   N DG+    CGN   C      ++             T  G++ ++ +       
Sbjct: 60  RVHYYNSDGTAADLCGNATLCSTAISAQW--GITSASGMRLATGAGLINSRID------- 110

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
             G P +  + I          R    I P      R  F V+ G PH +   E D    
Sbjct: 111 --GLPAIALQPI-------TDIRPDMPIAPATAQGRRVGFAVA-GIPHLVILCE-DADAV 159

Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D+A  G  L +H      G N++        S   RT+ERGV G T ACG+ A A+ V  
Sbjct: 160 DVAGAGPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAVLL 219

Query: 237 GCLHKTN-RAVSVKMLGG-GLLIEWH----------DNNHVFMTGEAKKEWEGKL 279
                ++    +++   G  + ++            +     + GE +  + G++
Sbjct: 220 RSWGLSDGATTTIRTSSGRDVEVDLEPLTAPDGRSLEGFRPTLRGEGRVVFRGEI 274


>gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
 gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
          Length = 330

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 99/309 (32%), Gaps = 41/309 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----------Q 56
            K  G  N  +++D R    ++T   +  L+        D ++ +               
Sbjct: 23  TKGHGTQNDFVLLDDRDGLLDLTPALVRELADRRAGLGGDGVIRLVRSAHLPEGAALLAD 82

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAK--- 109
                 F+   N DGS  + CGNG+R V  F                 T  G+   +   
Sbjct: 83  VPDATWFMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLGTRAGVRRVRRVP 142

Query: 110 ----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
                      +VDMG   L      +   FD        +       +R    V +GNP
Sbjct: 143 VPDGLPDAVWYAVDMGRWYLPGGEDAVRDGFDA------QVAVAGLADVRPALGVDVGNP 196

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWE 216
           H +  +       D A         P+   G N+ +                 + +R  E
Sbjct: 197 HTVLALPGP-EELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVHE 255

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           RGVG T +CG+ ACA+ +A              V + GG + +    + HV + G A   
Sbjct: 256 RGVGETRSCGTGACAAALAVRTWAGAGAPDVWLVDVPGGTVRVTALSDGHVELAGPAVLV 315

Query: 275 WEGKLDIKT 283
               +D+  
Sbjct: 316 ATATVDLAA 324


>gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH]
 gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH]
          Length = 242

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 41/270 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +K    GN  ++       D  +  A       +    D +++I   +    D   +  N
Sbjct: 4   SKYSASGNDFVIFHAFLKKDR-SEIAKILCDRQNGVGADGLIVILPHE--QYDFEWQFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            DGSE + CGNG R    +   + +  K   F TI G++ A+ + D              
Sbjct: 61  ADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAEVDGD-------------- 106

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            ++    +  K+ ++           +    +   G PH +    DD+  +++     L 
Sbjct: 107 -IVESQLTEHKIIKE-----------VGEWKLFDTGVPHLVKI--DDINSFNIEEARKLR 152

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +H       N+++A V    +L +RT+ERGV   T ACG+  CAS + +         V
Sbjct: 153 YEH-----NANVNVAEVKD-GNLYVRTYERGVEDETLACGTGMCASFLFAREQGLVGNEV 206

Query: 247 SVKMLGG-GLLIEWHDNNHVFMTGEAKKEW 275
           +V    G  L I+   NN ++  G+ K  +
Sbjct: 207 TVYPKSGEELHIK-LKNNRLYFKGKVKNTF 235


>gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
 gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
          Length = 303

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 112/317 (35%), Gaps = 58/317 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           V F K     N  +++        + +  + A+         D I+ +            
Sbjct: 4   VPFLKGHATRNDFVILPDHDDELELDAALVRAICDRRRGLGADGILRVVAVPADDAPVSS 63

Query: 53  ------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94
                                Q A+   F+   N DGS  + CGNG+R   R+L      
Sbjct: 64  AGATADAAAGRPPQPSAGRPPQPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLE 123

Query: 95  K--SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152
           +   F   T  G +       G ++  +  P L        R   +   D   +  V   
Sbjct: 124 EAGRFLVGTRIGPVPVDVPPAGDVTAWLPAPEL--------RGGGRARFDGRMLEGVR-- 173

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212
                  VS+GNPH +  V D L   D  +   +L     F +G N+ +  +     L +
Sbjct: 174 -------VSVGNPHLVCVV-DTLADVDF-TRAPVLDSDE-FPDGANVEVVEIERPGVLRM 223

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMT 268
           R +ERGVG T +CGS ACA    +    +  R       + + GG L I + D + V + 
Sbjct: 224 RVYERGVGETWSCGSGACAVAAVAEGAERIPRPADGWWRIVVPGGELRIRF-DGDRVALA 282

Query: 269 GEAKKEWEGKLDIKTGK 285
           G A    EG+L +   +
Sbjct: 283 GPAVVVAEGRLHLAALE 299


>gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276]
 gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s]
 gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70]
 gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s]
 gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1]
 gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768]
 gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222]
 gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074]
 gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301]
 gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC]
 gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC]
          Length = 275

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P  DWK  
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLP--DWK-- 121

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                  K +R   H+ P         F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
             F  EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271
           +V      L+  + +   VF+ G  
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255


>gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 297

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          V+MGE  +              + D + +             V MGN
Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215
           PH +  +ED      +    +L+ K    P+     N+   RV  ++         +R  
Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ +      KT      + + GG L ++  D++ V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      ++D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPSADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          V+MGE  +              + D + +             V MGN
Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGAEGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215
           PH +  +ED      +    +L+ K    P+     N+   RV  ++         +R  
Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ V      KT      + + GG L ++  D++ V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGVV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99]
 gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99]
          Length = 290

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 49/311 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52
           + FAK  G  N  +++       ++T+  + AL         D I+            ++
Sbjct: 1   MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60

Query: 53  HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           H   D     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +        ++VDMG+              +K+      +G        +   V +GN
Sbjct: 121 TVHHADQTHADVTVDMGKA-------------NKLGPGEAVVGGRR----LSGVAVDVGN 163

Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          + L   D+ +   +   H  F EGVN+ +    +   + +R  ERGVG
Sbjct: 164 PHLACLDPGLTPEQLAALDVGA--PVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGVG 221

Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+V A     +    ++V++ GG + +   D   + + G +     G++
Sbjct: 222 ETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI 280

Query: 280 DIKTGKWIKKN 290
              + +W +  
Sbjct: 281 ---SEEWWRDQ 288


>gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 326

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 60/322 (18%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52
           M      F+K  G  N  +++       ++    +  LS        D ++ I       
Sbjct: 1   MPEQTTPFSKGHGTENDFILLPDFDADIDLDPALVRVLSDRRAGLGADGVIRIARTEALI 60

Query: 53  --------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRK 95
                             + + + F+   N DGS  + CGNG R    +L +        
Sbjct: 61  DKGIIAREAVGESGDGAPENTPEWFMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSP 120

Query: 96  SFTFETIRGILVAKE-------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
            F+  T  GI            +    I+VDMG+  +      + +S    DR RF    
Sbjct: 121 KFSIGTRAGIKRLTVVNPAQTTDSSARIAVDMGQVGI------IGQSVAAFDRQRFA--- 171

Query: 149 VNHLFLRNPFVVSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT- 205
                      + +GNPH   +    DD    +L      +     F  G N+ +     
Sbjct: 172 --------GVGIDVGNPHLACVIPDLDDAGLRELPLHLKPVLDEEFFPHGANVEVLTPLR 223

Query: 206 ------SLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIE 258
                    ++ +R  ERG G T +CG+   A+ VA+     + +  V V + GG + + 
Sbjct: 224 ADDSRDGDGTVSMRVHERGSGETRSCGTGTVAAAVAALADRGQVDGTVHVVVPGGEVTVT 283

Query: 259 WHDNNHVFMTGEAKKEWEGKLD 280
             D     + G +     G ++
Sbjct: 284 IKDEQ-ATLEGPSVIVASGTIN 304


>gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
 gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
          Length = 120

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  VE D+   ++   G +L +H  F E  N+   ++    +L LR +ERG G 
Sbjct: 1   MGNPHCVIQVE-DIKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           T ACGS ACA+V         ++ V V + GG LLIEW  + N ++MTG A   ++G + 
Sbjct: 60  TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119

Query: 281 I 281
           +
Sbjct: 120 L 120


>gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 141

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 3/139 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D+   H +I                FDQ++L+    +  VD 
Sbjct: 1   MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDM
Sbjct: 61  RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDM 120

Query: 121 GEPILDWKLIPLARSFDKM 139
           G P      IP   +   +
Sbjct: 121 GPPRFVPDEIPFEAAEQAI 139


>gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
 gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
          Length = 290

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 118/311 (37%), Gaps = 49/311 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52
           + FAK  G  N  +++       ++T+  + AL         D I+            ++
Sbjct: 1   MIFAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGVL 60

Query: 53  HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           H   D     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  HRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +        ++VDMG+              +K+      +G        +   V +GN
Sbjct: 121 TVHHADQTHADVTVDMGKA-------------NKLGPGEAVVGGRR----LSGVAVDVGN 163

Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          + L   D+ +   +   H  F EGVN+ +    +   + +R  ERGVG
Sbjct: 164 PHLACLDPGLTPEQLAALDVGA--PVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGVG 221

Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+V A     +    ++V++ GG + +   D   + + G +     G++
Sbjct: 222 ETRSCGTGTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI 280

Query: 280 DIKTGKWIKKN 290
              + +W +  
Sbjct: 281 ---SEEWWRDQ 288


>gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
 gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8]
 gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 297

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          V+MGE  +              + D + +             V MGN
Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215
           PH +  +ED      +    +L+ K    P+     N+   RV  ++         +R  
Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ +      KT      + + GG L ++  D++ V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 300

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 117/311 (37%), Gaps = 54/311 (17%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIM----------- 50
           S  + F K  G  N  +++  R     +T +   AL         D ++           
Sbjct: 4   SPALAFVKGHGTQNDFVILPDRQAQIELTEELTAALCDRQRGLGADGVLRVATAGSLVAE 63

Query: 51  -LIHDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRG- 104
            ++    D    VD F+   N DGS  + CGNG+R    F      +    FT  +  G 
Sbjct: 64  GVLERLPDGVSGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGA 123

Query: 105 ---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
               + + +  D  +SV MG  +L+     +  +   +  +                 V 
Sbjct: 124 RPVRIHSADETDAEVSVSMGPVVLEGAG-RVGIAGRTLTGE----------------AVD 166

Query: 162 MGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------S 209
           +GNPH    V+     DL   DL +   L      F  G N+ I    +           
Sbjct: 167 VGNPHLACVVDGLTVADLAGLDLTTGAEL--DAAQFPHGANVEILTPLTAASDGGSADFH 224

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268
             +R +ERGVG T +CG+   A+  A+     + + AV++ + GG +L+   D + V + 
Sbjct: 225 AHMRVFERGVGETRSCGTGLVAAAAAALSGAGRESGAVAITVPGGDVLVTVADGSAV-LR 283

Query: 269 GEAKKEWEGKL 279
           G ++    G+L
Sbjct: 284 GPSRLVARGEL 294


>gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68]
          Length = 297

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          V+MGE  +              + D + +             V MGN
Sbjct: 128 RGNMRPYGANVFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTW 215
           PH +  +ED      +    +L+ K    P+     N+   RV  ++         +R  
Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ +      KT      + + GG L ++  D++ V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGIV--LQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
 gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
          Length = 275

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 28/265 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P  DWK  
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLP--DWK-- 121

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                  K +R   H+ P         F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 122 -------KAERKLTHVLP---GMPEQVFFIDAGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
             F  EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271
           +V      L+  + +   VF+ G  
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPV 255


>gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 212

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
           +R+    G   Q CGNG RCV  +L        + F  ++       +       +V+MG
Sbjct: 1   MRM----GPAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMG 56

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+ + + IPL+   +       ++  +    LR    VSMGNPHA+  V D +    + 
Sbjct: 57  LPVFEPERIPLSGFPNACAE---YVLSLQGEVLRCG-AVSMGNPHAVVEV-DLIDVAPVE 111

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      +
Sbjct: 112 RIGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGR 171

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
             R V V + GG L ++W      V ++G A+  ++G 
Sbjct: 172 VGRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGV 209


>gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010]
 gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010]
          Length = 299

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 100/306 (32%), Gaps = 50/306 (16%)

Query: 9   AKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +  +D  G  +    +             D ++ +   Q           
Sbjct: 8   TKAHATGNDFIAYLDSDGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQVA 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108
              D   + F+   N DGS  + CGNG R +  F     + S    + F   T  G+   
Sbjct: 68  ACDDGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKTL 127

Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +   D          VDMG             S+ + D D F +             V M
Sbjct: 128 RPLGDVAPYGRDVFRVDMG-------------SWRRGDLDAFTVTIPGTPGAARGTFVDM 174

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARV------TSLESLDLR 213
           GNPH +  +ED +         +L+      P+     N    RV             +R
Sbjct: 175 GNPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMR 234

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
             ERG G T +CG+  CA+ +        +    + + GG + ++   +  V +TG A  
Sbjct: 235 VNERGCGETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATL 292

Query: 274 EWEGKL 279
             +  L
Sbjct: 293 VADVTL 298


>gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
          Length = 299

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 100/306 (32%), Gaps = 50/306 (16%)

Query: 9   AKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +  +D  G  +    +             D ++ +   Q           
Sbjct: 8   TKAHATGNDFIAYLDSDGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQVA 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVA 108
              D   + F+   N DGS  + CGNG R +  F     + S    + F   T  G+   
Sbjct: 68  ACDDGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKTL 127

Query: 109 KENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +   D          VDMG             S+ + D D F +             V M
Sbjct: 128 RPLGDVAPYGRDVFRVDMG-------------SWRRGDLDAFTVTIPGTPGAARGTFVDM 174

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARVT------SLESLDLR 213
           GNPH +  +ED +         +L+      P+     N    RV             +R
Sbjct: 175 GNPHVVCVIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMR 234

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
             ERG G T +CG+  CA+ +        +    + + GG + ++   +  V +TG A  
Sbjct: 235 VNERGCGETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATL 292

Query: 274 EWEGKL 279
             +  L
Sbjct: 293 VADVTL 298


>gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
 gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
          Length = 314

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 115/312 (36%), Gaps = 53/312 (16%)

Query: 4   SMVDFAKMEGIGNKILV---IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S + F K  G  N  +V   +D +     I  D + A   D          +      + 
Sbjct: 18  STLLFIKAHGTENDFVVLIDVDDQLEQLGILDDDLVASLCDRRAGVGGDGFLRIVSSDAH 77

Query: 61  DA--------FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE 110
           DA        F+   N DGS  + CGNG+R     L ++   + + F  +T  G+     
Sbjct: 78  DAQGANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHITI 137

Query: 111 N----------RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           +              + V MG         P+  +     R           F      V
Sbjct: 138 HSLTGEDPNGSTHAVVEVGMG---------PVGVTGVSTGR--------MGDFEFAGLGV 180

Query: 161 SMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD------L 212
            +GNPH  A+      +   +LA        H  F EGVN+ I  VT  E+ D      +
Sbjct: 181 DVGNPHLAAVIPGLTPVQLAELAFEQPAF-DHEFFPEGVNVEI--VTDPETADGDMRVGM 237

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           R WERGVG T +CG+   A+  A+          ++V + GG L I  + +    MTG +
Sbjct: 238 RVWERGVGETRSCGTGTVAAARAALADAGVENGTITVDVPGGTLTIAIN-DGEATMTGPS 296

Query: 272 KKEWEGKLDIKT 283
                G++ +K+
Sbjct: 297 VIVARGEVSLKS 308


>gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28]
          Length = 271

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 20/257 (7%)

Query: 18  ILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQDASVDAFIRIINCD 70
             ++D  G      SDA  A     L   +++    D I+ +    +A     +R++N D
Sbjct: 7   FSLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSSEAGPIGQMRVVNSD 66

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+R V R+L  +        ET++ IL  K+    + S+    P    ++ 
Sbjct: 67  GSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKK----ATSLGFDIPTYQVEIS 122

Query: 131 PLARSFD----KMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFG 184
           P+  + +     +  ++     V  L     F  VS+ NPH I FV+  +   D   +  
Sbjct: 123 PVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLA 182

Query: 185 NLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT- 242
           + L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  +    L K  
Sbjct: 183 SYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDT 242

Query: 243 -NRAVSVKMLGGGLLIE 258
               ++V   GG + + 
Sbjct: 243 FETPLNVYNDGGRVQVT 259


>gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 321

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 110/323 (34%), Gaps = 57/323 (17%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------ALSTD 41
           ++ + F K  G  N  +++        +T + +                      A++  
Sbjct: 11  TTGLRFTKGHGTHNDFVLVADTRGDLELTPEQVRTLADRRGGIGGDGVIRLAPTAAIARA 70

Query: 42  DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSF 97
                DQ++     ++ +   F+   N DGS  + CGNG+R    F  S           
Sbjct: 71  GEAVADQVL----AEEPAAIWFMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTEL 126

Query: 98  TFETIRGILVAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
              T  G+   ++    +     +VD+G   L       A   D     R    P     
Sbjct: 127 ALGTRAGVKRVRKETGPDGVPWYAVDLGPWRLPGGAEAAAAGADAAVAVRGWAAP----- 181

Query: 154 LRNPFVVSMGNPHAIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---- 207
            R    V +GNPH +  +   D+L   DL     +    P    G N+ +          
Sbjct: 182 -RPALSVDLGNPHTVVALGSTDELARIDLTQAPQVAPPPP---HGTNVELVVPLEETTSG 237

Query: 208 ----ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS-----VKMLGGGLLIE 258
                 + +R  ERGVG T +CG+ A A+ +A                 V++ GG L + 
Sbjct: 238 AETAGRVRMRVHERGVGETQSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVR 297

Query: 259 WHDNNHVFMTGEAKKEWEGKLDI 281
              + H  + G A+  + G+  +
Sbjct: 298 VLTDGHAELAGPAQLVFSGETTL 320


>gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152]
 gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152]
          Length = 302

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 112/311 (36%), Gaps = 52/311 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           ++F K  G  N  +V+       ++T   + AL         D ++ +            
Sbjct: 9   IEFTKGHGTENDFVVLPDEDVRLDLTPARVAALCDRQRGLGADGVLRVARAGALLRAGVL 68

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  +  D F+   N DGS  + CGNG+R    +L    R +       +  G    
Sbjct: 69  DALPAGVSDTDWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPV 128

Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +      G ++V MGE                +      +    +  L     + +GN
Sbjct: 129 TVHAAGPTHGEVTVAMGEVR-------------ALGASTATVAGWGYSGLG----IDVGN 171

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLES-LDLRTWERGVG 220
           PH    V+  L    LA     ++      +F  GVN+ I      +  +D+R +ERGVG
Sbjct: 172 PHLAC-VDPTLTAEALAKLDLTVSPGYDPDLFPHGVNVEILTPLDEQRAVDMRVYERGVG 230

Query: 221 LTAACGSAACASV-----VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            T +CG+   A+           L   + AV+V++ GG + +   +    ++ G +    
Sbjct: 231 ETRSCGTGTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVG-LEAGSAWLRGPSVLVA 289

Query: 276 EGKLDIKTGKW 286
            G+L   T  W
Sbjct: 290 TGRL---TADW 297


>gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 173

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   
Sbjct: 2   VYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDT 61

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YDL   G LL  HP+F E  N+SIA+VT  +++ LR WERG GLT ACG+AACA+ VA+ 
Sbjct: 62  YDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAAS 121

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
            L    R+  + + GG L IEW  ++HV MTG    E EG    ++  G
Sbjct: 122 RLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSFAPELFAG 170


>gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
 gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
          Length = 308

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 107/311 (34%), Gaps = 45/311 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------------LI 52
           V F K  G  N  ++I       ++  + +  L         D ++             I
Sbjct: 17  VPFVKGHGTQNDFVLIADPDAQLSLGVETVALLCDRRAGIGGDGLIRAARAGALRASGAI 76

Query: 53  HDFQDA--SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
               D     D F+   N DG  V+ CGNG R    FL +     R  +   T  G    
Sbjct: 77  AQLPDGVGDEDWFMDYRNADGGVVEMCGNGARVFAHFLRALGLEPRGDYAIGTRAGAKRV 136

Query: 109 K----ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +    +     +SV+MG   L     P A S     R  F           +     +GN
Sbjct: 137 RLLSFDGGGAEVSVEMGRVRLGG---PSATSVAGAPRGCF-----------SGTSADVGN 182

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH +   +    D L   DL    +      +F EGVN+      S +   LR  ERGVG
Sbjct: 183 PHLVCLAQGLDLDGLAALDLTRQPDY--DKAVFPEGVNIEFVVPHSPDKATLRVHERGVG 240

Query: 221 LTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T ACG+ + A+       L   +  V V   GG +      +    + G +     G+ 
Sbjct: 241 ETKACGTGSVAAAAVVLAELGSGSGEVVVASPGGVVQAYVGPDGSAVLRGPSALVARGEF 300

Query: 280 DIKTGKWIKKN 290
           D     W+++ 
Sbjct: 301 D---KAWLQQR 308


>gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
 gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
          Length = 304

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 110/305 (36%), Gaps = 49/305 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML--------------IH 53
            K    GN  +V          T+D +  L         D ++               I 
Sbjct: 16  TKTHATGNDFVVYADPEGRFEPTADEVRHLDDRHFGIGGDGVIRLAHPEDVSDLTAEQIA 75

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV---- 107
           + ++   + F+   N DGS  Q CGNG R +  F   R   K  +F   T  G+ V    
Sbjct: 76  ECREDGAEWFMDYRNADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL 135

Query: 108 --AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
              +        VDMG             ++ + + D F +             V MGNP
Sbjct: 136 GSVEGLGRNVFRVDMG-------------AWKRGEVDAFEVTIPGTAGSARGTYVDMGNP 182

Query: 166 HAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWE 216
           H +  +ED           +L+ K    P+     N+   R+ + +      +  +R  E
Sbjct: 183 HVVAVIEDGKATLPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNE 242

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RG G T +CG+  CA+ V        +   ++ + GG L I+  D + V +TG+A     
Sbjct: 243 RGCGETLSCGTGLCATAVTLRAKTGID-HWTIAVRGGVLRIDVSDTD-VKLTGDATLV-- 298

Query: 277 GKLDI 281
           G + +
Sbjct: 299 GDITL 303


>gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 63/299 (21%)

Query: 3   SSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           +  + F K +G GN  ++ID R G  +      I  +         D +ML+ D ++   
Sbjct: 2   TDQIKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQDTKN--F 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG E   CGNG RC+V F     + R+   F  + G   A+ + D  +++ 
Sbjct: 60  DFEMVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAVDGPHQAQIH-DNQVNLQ 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M                D++ +D               +V++ G+PH I  V  DL + D
Sbjct: 119 M-------------IDVDQITKDE------------TAYVLNTGSPHFIKIVS-DLKNMD 152

Query: 180 LASFGNLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTA-------------A 224
           +   G  +  +  +  EG+N++           +RT+ERGV   T              +
Sbjct: 153 VYKEGYTIRNNATYKNEGINVNFVE-KEENGYFVRTFERGVEDETLACGTGATAAAMAMS 211

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
                           +    + +++LGG L I +         V++ G AK  +EG +
Sbjct: 212 -----------IEENMEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259


>gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500]
          Length = 343

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+    V S   +  R W
Sbjct: 212 NATLVSMGNPHCVVHLEN-VQDFPMDYYGEVIETHPIFPDKTNVEFVEVISSNQVRARVW 270

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG G T ACG+ ACA VVA     KT+R  +V M GG L +EW  ++ +V+ +G +   
Sbjct: 271 QRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHMDGGSLEVEWRNEDEYVYHSGPSTTT 330

Query: 275 WEGKL 279
           ++G +
Sbjct: 331 FQGTV 335


>gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 297

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 106/307 (34%), Gaps = 52/307 (16%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +   +           
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F        S   F   T  G+ +   
Sbjct: 68  AVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +          ++MGE             +   + D + +             V MGN
Sbjct: 128 RSNTKPYGANVFQIEMGE-------------WKVGETDAYEVTIPGTEGSARGTFVDMGN 174

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTW 215
           PH +  +ED      +    +L+ K    P+     N+   R+      T +    +R  
Sbjct: 175 PHVVAVIEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVN 234

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ERG G T +CG+  CA+ +      KT      + + GG L ++  D++ V +TG A   
Sbjct: 235 ERGCGETLSCGTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLV 291

Query: 275 WEGKLDI 281
            +  +D+
Sbjct: 292 AD--IDL 296


>gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
 gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
          Length = 291

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 51/305 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +V+       ++T  A+ AL         D ++ +            
Sbjct: 1   MIFAKGHGTENDFVVLPDLDAALSLTPSAVAALCDRRRGLGADGVLRVTRAGAARAAGVF 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  ++ D ++   N DGS  Q CGNG+R    +L          F   ++ G    
Sbjct: 61  DRLPDGVSAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESADEFVVGSLAGPRPV 120

Query: 109 KENR-------DGSISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
             +           ++V+MG+         +   RSFD +                    
Sbjct: 121 VLHGFDPARATTAEVTVEMGKANQFGAGSAVVGGRSFDGL-------------------A 161

Query: 160 VSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
           V +GNPH   +    DDL   D+A+   +     +F +GVN+ +   +   ++ +R  ER
Sbjct: 162 VDVGNPHLACVGITADDLAALDVAA--PVSFDPALFPDGVNVEVLTASVDGAVSMRVHER 219

Query: 218 GVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GVG T +CG+   A+ VA+      +   + V++ GG + +   ++   ++ G +     
Sbjct: 220 GVGETRSCGTGTVAATVAALAHDGADTGTLRVRIPGGEVTVTVTESTS-YLRGPSVLVAR 278

Query: 277 GKLDI 281
           G+LD 
Sbjct: 279 GELDP 283


>gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7]
          Length = 273

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +  +      I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FVE+  +   L S  
Sbjct: 118 I-LDVIP------ALRCEKFFSSDSVLEHIPTFYLIDTGVPHLVGFVENKEW---LNSLN 167

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            L  +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 168 ALELRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKATLIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
 gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
          Length = 249

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 31/275 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +K    GN  ++       D  +  A       +    D ++++      + +      N
Sbjct: 4   SKYNANGNDFVIFHTFVSADR-SELAARLCDRYNGIGADGLIVL-KPDKDTNEIVWEFYN 61

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            DGS    CGNG R   ++     +    F   T  GI+    ++DG + V++  P +  
Sbjct: 62  SDGSHADMCGNGSRAAAQYAVDNQLCTNVFDLVTGSGIVSVNVSKDG-VEVELTSPKI-- 118

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
                               P++  F +       G PH + FV  DL  +D+ +     
Sbjct: 119 ----------------LSNKPIDE-FGKIWHFYDTGVPHLVSFVS-DLNEFDIQTC---- 156

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +   +    N+++A++ +  ++ +RT+ERGV   T ACG+   A    +      +R  
Sbjct: 157 -RDLRYKYNANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASRCC 214

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V    G  L    +N  +F  G+ K  ++  +D+
Sbjct: 215 KVYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249


>gi|154149336|ref|YP_001405720.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
 gi|153805345|gb|ABS52352.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
          Length = 272

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 105/288 (36%), Gaps = 41/288 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--------------- 50
           +  +K    GN  ++ +      N ++ A    +       D ++               
Sbjct: 3   IKISKYNASGNDFVIFES-DSFHNYSNLARKICNRHKGIGADGLIVIIKNKSEISNKISS 61

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK 109
           LI D  +  +D      N DGS+   CGNG R    F    ++  K+  F T  GI+ A+
Sbjct: 62  LILDLNNDKIDFAWDFYNSDGSKADMCGNGSRAAALFAYENKIANKNMKFLTGAGIINAE 121

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
                   ++    I++ +L    +  +    + F                  G PH + 
Sbjct: 122 ICE-----INKHLAIVESELTKPVKKAENFSENGF-----------LWSFYDTGVPHLVT 165

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           FV+ DL  +++      +A++       N++ A     E L +RT+ERGV   T ACG+ 
Sbjct: 166 FVK-DLNDFNIE-----VARNLRKKYNANVNFASFKD-EILRVRTYERGVEDETLACGTG 218

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             A  +           V V    G +L    +++ VF  G     ++
Sbjct: 219 MAACFITGVINFNLQNVVKVMPKSGEILYLRKNDDKVFFKGAVSHSFD 266


>gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
 gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
          Length = 298

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 98/311 (31%), Gaps = 55/311 (17%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56
           +M+   K  G GN  L+        N T   +  L         D ++ +   Q      
Sbjct: 6   TMI---KAHGTGNDFLIYCDADGSVNPTPREVRELCDRHFGLGADGLIRVTKPQFVDQVS 62

Query: 57  --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI 105
                      V  F+   N DGS  + CGNG R    F          + F   T  G+
Sbjct: 63  TEVADECGAKGVQWFMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGV 122

Query: 106 LVAKENRD------GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            +                VDMG             S  ++      I             
Sbjct: 123 KMLSSLGAQPGLGQHVFRVDMG-----------GWSMGELYAYTVSIPGQPGQAP--GTF 169

Query: 160 VSMGNPHAIFFVEDDLYHYDL-----ASFGNLLAKHPMFSEGVNLSIARVTS------LE 208
           V MGNPH +  +ED      +      +    +   P    G N+   R+          
Sbjct: 170 VDMGNPHVVAVIEDAQSTLPVIDDLDLTHAPKVE--PQLDHGQNVEFVRIDDMDERADQG 227

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT 268
              +R +ERG G T +CG+  CA+ +        N    + + GG L +   DN+ V +T
Sbjct: 228 EATMRVYERGCGETLSCGTGLCATAITLRARTGIN-HWRITVAGGILDVAVTDND-VQLT 285

Query: 269 GEAKKEWEGKL 279
           G A+      L
Sbjct: 286 GNAELVATVTL 296


>gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 114/298 (38%), Gaps = 61/298 (20%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASV 60
           +  + F K +G GN  ++ID R      +++A              D +ML+ D ++   
Sbjct: 2   TDQIKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQDTKN--F 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG E   CGNG RC+V F     +  +   F  + G   A+ + D  +++ 
Sbjct: 60  DFEMVYYNADGREGSMCGNGGRCIVAFARDLNIIGEDAAFLAVDGPHQAQIH-DNQVNLQ 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M                D++ +D             + +V++ G+PH I  V  DL + D
Sbjct: 119 M-------------IDVDQISKDE------------SAYVLNTGSPHFIKIVS-DLKNMD 152

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +  +  +  EG+N++           +RT+ERGV   T               
Sbjct: 153 VYQEGYTIRNNATYKKEGINVNFVE-KEENGYFVRTFERGVEDET----------FACGT 201

Query: 238 CLHKTNR------------AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
                               + +++LGG L I +  N H    V++ G A   +EG +
Sbjct: 202 GATAAAMAIAIEENMEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259


>gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
 gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
          Length = 479

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + L  +G ++  HP+F +  N+    V + + L +R W
Sbjct: 347 NSTLVSMGNPHCVLHLEN-VEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRDLLRVRVW 405

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  A   
Sbjct: 406 QRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFISCPAITV 465

Query: 275 WEGKL 279
           ++G +
Sbjct: 466 FQGTI 470



 Score = 74.4 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVI---------DMRGCHDNITSDAINA---LSTDDNTHFDQ 48
           + S +++F KM   G   +V          + +     +    I A      +     D 
Sbjct: 57  LSSIVLNFCKMHVRGQDFIVFHIDSLKYESNNQSFRPPVKGLQIIAQNLCDRESGVGADN 116

Query: 49  IMLIHDFQDA---SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
           +++I         + D  + I N DGS  ++C  G+ CV +++   
Sbjct: 117 VLVITPPPTEQLENADFQLLIFNSDGSLAENCSTGVSCVCKYIIDY 162


>gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 214

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+D  + V +G   
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG--- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              K+  +  +F+++ +                 + + G PH + F ++      L  F 
Sbjct: 114 ---KIKSVQNTFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKK 208


>gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
          Length = 271

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 105/291 (36%), Gaps = 37/291 (12%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ---- 56
           + S   F+K  G GN  +++        +T+  I  L         D ++ +        
Sbjct: 6   KGSATAFSKGHGTGNDFVILADPDNAAPLTNWQIADLCDRRSGIGGDGLLRVVRSAKHPE 65

Query: 57  ----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE 110
                +  + F+   N DGS  + CGNG+R   R+L      +       T  G+     
Sbjct: 66  AVELSSEAEWFMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSC 125

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             D    VDMG    +        + + +   R + G            VSMGNPH +  
Sbjct: 126 VGD-EFRVDMGPARFE-------GASEAIVDGRRYAG----------TRVSMGNPHLVCR 167

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V DD Y  DL     +     +F  GVN+          + +R  ERGVG T +C     
Sbjct: 168 V-DDPYTLDLHKVPAV--DAQLFPTGVNVEFIT-GPANHITMRVHERGVGETRSC---GT 220

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +V A+          +V + GG L +    +     TG A    EG  ++
Sbjct: 221 GAVAAAAVALGGVGTCTVDVPGGTLTVTVSTDTTTL-TGPAVIVAEGHTNL 270


>gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens
           YS-314]
          Length = 313

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 108/298 (36%), Gaps = 41/298 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59
           + FAK     N  ++I       ++T+D +  L         D ++ +        Q   
Sbjct: 35  IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 94

Query: 60  VD---AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---- 110
           VD    F+   N DGS  + CGNG+R    +L +   +    FT  T  G          
Sbjct: 95  VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 154

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             D  + VDMG          +      M  D+   G            V +GNPH    
Sbjct: 155 RDDAVVRVDMGPAA-------VTGISTCMIADQPFAG----------MGVDLGNPHLACV 197

Query: 171 VEDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTWERGVGLTAA 224
           V         ++A    +      F  GVN+ +    +      ++ +R WERGVG T +
Sbjct: 198 VPGLTPAALKNIALEAPVFDTA-FFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRS 256

Query: 225 CGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CG+    A+  A     +    V+V + GG + +   +     +TG ++    G + I
Sbjct: 257 CGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 313


>gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
 gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
          Length = 273

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 108/274 (39%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   ++   D    
Sbjct: 1   MVFYKYSGSGNDFLIA-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSRN--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      +  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYE 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N+  L N    ++++ G PH + FV++  +   L 
Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFY 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G A+  
Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDEIFYKGVARYI 258


>gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24]
          Length = 272

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      +  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N   L N    ++++ G PH + FV++      L 
Sbjct: 118 I----------LDTIPNLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  + +   H
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFH 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G A+  
Sbjct: 225 NTPKKATLIPKSNESLELSLKNDEIFYKGVARYI 258


>gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae]
          Length = 297

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 108/303 (35%), Gaps = 45/303 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI---------- 52
           + +   K  G  N  ++I        +T D I AL         D ++ +          
Sbjct: 9   AQLPVYKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSG 68

Query: 53  ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGIL 106
                    A+ D F+   N DGS  Q CGNG R    ++ +   +    F   T  G  
Sbjct: 69  VLAALPDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGAR 128

Query: 107 VAKE----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
             K     +    ++VDMG             S +        IG      L     V M
Sbjct: 129 FVKVRSFDDSQAEVTVDMG-------------SAEVTGVSTCTIGSQQFAGLG----VDM 171

Query: 163 GNPHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           GNPH    V     +D+ + DL     L      F EGVN+ IA         +R +ERG
Sbjct: 172 GNPHLACVVPGYGQEDIENLDLVK--PLFDP-KFFPEGVNVEIATPLVQGVTHMRVFERG 228

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           VG T +CG+   A+  A+           V ++ GG +      +   +TG ++    G 
Sbjct: 229 VGETRSCGTGTVATARAALADAGHADGEVVVVVPGGKVRVTIQGDESTLTGPSRIVASGY 288

Query: 279 LDI 281
           +++
Sbjct: 289 INL 291


>gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
 gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
          Length = 289

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 109/301 (36%), Gaps = 46/301 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           +DF+K  G  N  +V+       ++    ++AL         D I+ +            
Sbjct: 1   MDFSKGHGTQNDFVVLPDLDVRIDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---- 104
                  A+ D F+   N DGS  + CGNG+R    +L       +  F   +  G    
Sbjct: 61  GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 120

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           ++   +   G ++V MG       +  L  S   +D   F               + +GN
Sbjct: 121 VVHGYDATHGDVTVAMGT------IKDLGTSSATIDGRVFA-----------GVGIDVGN 163

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH     E    + L   DL+           F  GVN+ I        + +R  ERGVG
Sbjct: 164 PHLACVDEHVTPEVLSSLDLSVSPGF--DPGFFPHGVNIEIVTPIHDGGVHMRVHERGVG 221

Query: 221 LTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+   A+  A+     +   +V V++LGG + +   +     + G +     G +
Sbjct: 222 ETRSCGTGTVAAAAAALRYDGRDEGSVLVRVLGGEVQVTV-EGGKGSLRGPSVLVASGTI 280

Query: 280 D 280
            
Sbjct: 281 S 281


>gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
 gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
          Length = 250

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K    GN  ++       D  +  A       +    D ++++     +  D   +
Sbjct: 1   MQLVKYSASGNDFVIYHTFVKKDR-SELAKLLCHRHEGIGADGLIVLLPH--SRYDFEWQ 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGSE + CGNG R    +  S     K   F T+ G++ A    D  +   + +P 
Sbjct: 58  FYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEAD-VVESQLTKPK 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +  + I                        +  +++  G PH + FVE DL  +D     
Sbjct: 117 ILDRKI--------------------EENGKRWWLIDTGVPHLVTFVE-DLNQFDKNESK 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            L  K+       N++   +  LE++ +RT+ERGV   T ACG+   A+ + +      N
Sbjct: 156 RLRNKY-----NANVNYGIIRDLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVVN 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
             V+V    G  L + + +N  +F  G  KK +E     K G W
Sbjct: 211 PTVTVVPKSGEELQLRY-ENEKLFFKGRVKKVFE---TFKEGIW 250


>gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
 gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
          Length = 292

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/302 (20%), Positives = 113/302 (37%), Gaps = 44/302 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + +DF+K  G  N  +V+       ++    ++AL         D I+ +          
Sbjct: 2   ATMDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAG 61

Query: 53  ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG-- 104
                    A+ D F+   N DGS  + CGNG+R    +L       +  F   +  G  
Sbjct: 62  VLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGAR 121

Query: 105 --ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
             ++   +   G ++V MG       +  L  S   +D   F               + +
Sbjct: 122 PVVVHGYDATHGDVTVAMGP------IKDLGTSSATIDGRVFA-----------GVGIDV 164

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           GNPH    V++ +    L++    ++       F  GVN+ I        + +R  ERGV
Sbjct: 165 GNPHLAC-VDEHVTAEVLSALDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGV 223

Query: 220 GLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+  A+     +   +V V++LGG + +   +     + G +     G 
Sbjct: 224 GETRSCGTGTVAAAAAALKFDGRDEGSVLVRVLGGEVQVTV-EGGEGSLRGPSVLVANGT 282

Query: 279 LD 280
           + 
Sbjct: 283 IS 284


>gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 324

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 102/323 (31%), Gaps = 72/323 (22%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G GN  +V        + +++ + AL +       D  +       +    F+   N
Sbjct: 14  KAHGCGNSFVVATDADDSHDPSAEEVRALCSQAFGIGADGFI---RCVRSGGAWFMDYRN 70

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKE------------- 110
            DGS+ + CGNG+R  V  L           +S    T  G    +              
Sbjct: 71  ADGSKAEMCGNGVRVFVDHLRREGLVRLAPGESLEVLTRGGTRTVELVAEAGGGAAEGCG 130

Query: 111 -----------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
                             VDMG                   R+   +       + +   
Sbjct: 131 EGGGAAGCGAAEDGAQYRVDMGPAS-------------SPARETVKVSVPGIPGVLSGIW 177

Query: 160 VSMGNPHAIFFVED-------DLYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSL--- 207
           V M NPH +  V+         L   D A     +     P   EG NL +    +    
Sbjct: 178 VDMPNPHTVVAVDSLAALEGAQLPAVDAARVAPQMRPAYEPEPREGTNLELVVDLTREGD 237

Query: 208 --ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLL------I 257
               L +R  ERGVG T ACG+  CA+ VA+          S  V + GG +       I
Sbjct: 238 EVGHLRMRVLERGVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDIDGVI 297

Query: 258 EWHDNN----HVFMTGEAKKEWE 276
           +W         VF+TG A +  E
Sbjct: 298 DWDGPGLTGAPVFLTGPATRVAE 320


>gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464]
          Length = 273

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N   L N    +++  G PH + FV++  +   L +
Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + E++ L+T+ERGV   T ACG+   A  VA+   + 
Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYS 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T    ++       L     N+ +F  G  +  
Sbjct: 226 TPEKAALIPKSSESLELSLKNDEIFYKGAVRYI 258


>gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d]
          Length = 273

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 106/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A    +  +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N   L N    +++  G PH + FV++  +   L +
Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T +  ++       L     N+ +F  G  +  
Sbjct: 226 TPKKAALIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
          Length = 283

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 105/298 (35%), Gaps = 41/298 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59
           + FAK     N  ++I       ++T+D +  L         D ++ +        Q   
Sbjct: 5   IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 64

Query: 60  VD---AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE---- 110
           VD    F+   N DGS  + CGNG+R    +L +   +    FT  T  G          
Sbjct: 65  VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 124

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             D  + VDMG   +                    I             V +GNPH    
Sbjct: 125 RDDAVVRVDMGPAAV-------------TGISTCMIADQPFA----GMGVDLGNPHLACV 167

Query: 171 VEDDLYHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLE----SLDLRTWERGVGLTAA 224
           V         ++A    +      F  GVN+ +    +      ++ +R WERGVG T +
Sbjct: 168 VPGLTPAALKNIALEAPVFDTA-FFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRS 226

Query: 225 CGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CG+    A+  A     +    V+V + GG + +   +     +TG ++    G + I
Sbjct: 227 CGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 283


>gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16]
          Length = 273

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 110/276 (39%), Gaps = 15/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++  +   L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  ++       L     N+ +F  G  +    G L
Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYIGMGVL 263


>gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
 gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
          Length = 289

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 107/298 (35%), Gaps = 42/298 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T  A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLTADLALTPAAVAALCDRRQGLGADGVLRVTTAGAARAAGVF 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPEGVVEGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPV 120

Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             N        ++V+MG+         L      +   +F           N   V +GN
Sbjct: 121 VLNALAGVGADVTVEMGKANQ------LGVGAATVGGRQF-----------NGLAVDVGN 163

Query: 165 PH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH   +           L     ++     F +GVN+ +       ++ +R  ERGVG T
Sbjct: 164 PHLACVDAAMSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGET 223

Query: 223 AACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +CG+    A+V A         +++V++ GG +++   D N  ++ G +     G L
Sbjct: 224 RSCGTGTVAAAVAALAHQGSQTGSLTVRIPGGEVVVTITDANS-YLRGPSVLVAHGDL 280


>gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   + +  G PH + FV++  +   L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKATLIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908]
 gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018]
 gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIA-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      +  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYE 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N   L N    ++++ G PH + FV++      L 
Sbjct: 118 I----------LDTIPNLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFH 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G A+  
Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDEIFYKGVARYI 258


>gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99]
 gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 107/274 (39%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L I       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFL-ITQSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      +  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N+  L N    ++++ G PH + FV++      L 
Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKGLLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFH 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G A+  
Sbjct: 225 NTPKKATLIPKSNEFLELSLKNDGIFYKGVARYI 258


>gi|319955792|ref|YP_004167055.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511]
 gi|319418196|gb|ADV45306.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511]
          Length = 255

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 103/279 (36%), Gaps = 38/279 (13%)

Query: 9   AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
            K    GN  ++  D +    +    A            D ++++     A  D      
Sbjct: 4   TKYNANGNDFVIFHDNQKRDRH--ELAKLLCDRHKGVGADGMVVLIPH--AEYDFEWEFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGSE   CGN  R V  +   +         F T  G++ A+ N    ++ DM EP +
Sbjct: 60  NSDGSEATMCGNATRAVAHYAVEKGISVNDRAEFLTGAGVITAEVNGLYVVT-DMLEPKI 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             + I                           +++  G PH +  VE DL ++DL     
Sbjct: 119 LRRDI--------------------EEEGLQWWLIDTGVPHLVAEVE-DLENFDLEMARR 157

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           L  K+       N++I  V + + L LRT+ERGV G T ACG+   A  V +    K   
Sbjct: 158 LREKYD-----ANVNIYTV-AEDELRLRTYERGVEGETLACGTGMTACYVRAREEGKARD 211

Query: 245 AVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V    G  L +E+ +       G+  K +  +L + 
Sbjct: 212 LCIVFPRSGDELYLEYKE-GRYRFGGKVDKTFVAELTLD 249


>gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38]
 gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38]
          Length = 272

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 104/271 (38%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +    IP  R       D           +   +++  G PH + FV++      L +  
Sbjct: 118 I-LDTIPALRCKKFFSSDSVL------ENIPMFYLIDTGVPHLVGFVKNKRLLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N+++A + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHEF---NANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
 gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
          Length = 273

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N   L N    +++  G PH + FV++  +   L +
Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T    ++       L     N+ +F  G  +  
Sbjct: 226 TPEKAALIPKSSESLELSLKNDEIFYKGAVRYI 258


>gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
 gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
          Length = 273

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 108/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++  +   L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHAF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
 gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
          Length = 273

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++      L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKEGLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2]
          Length = 329

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 113/318 (35%), Gaps = 49/318 (15%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57
           F K  G  N  +++        +  + I  L+        D ++ I              
Sbjct: 16  FIKGHGTQNDFVLLADDDSALEMHPETIAQLADRRSGLGSDGVIRIVRSASSGIPGAQEQ 75

Query: 58  --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAK-- 109
             A  + F+   N DGS  + CGNG+R     L +        +     T  GI   +  
Sbjct: 76  AEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTVRTV 135

Query: 110 -------ENRDGSISVDM---GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
                  +  D + SV+    G     W +I +   +   D +   +        R    
Sbjct: 136 LNPALGKQTGDATASVEQTLPGSAADSWYMIDMG-EWSLDDSEDVIVSTSGIEVPRPGMR 194

Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--------SLES 209
           V  GNPH +  + +  +L   +L     +L   P+  +G N+    +            +
Sbjct: 195 VETGNPHTVVALAESAELESAEL-RDAPVL--DPVPPQGSNVEYIVMEPARSDVAGGEGA 251

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN----- 262
           L +R +ERGVG T +CG+ ACA+ +A+      N      V + GG L I    N     
Sbjct: 252 LRMRVFERGVGETRSCGTGACAAAIAAHHWAGPNSPLQWRVDVPGGQLRIGITPNEDGTR 311

Query: 263 NHVFMTGEAKKEWEGKLD 280
             V ++G A    +G + 
Sbjct: 312 GSVTLSGPAVLVADGTIS 329


>gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702]
          Length = 292

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 48/304 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI---------- 52
           S ++F K  G GN  +++   G   ++T + +  L+        D ++ I          
Sbjct: 2   SALEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAG 61

Query: 53  ---HDFQD-ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106
                 +  A  D F+   N DGS  + CGNG+R     L      +       T  G  
Sbjct: 62  VIDEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRR 121

Query: 107 VAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
               +        +SVDMG P++      L  S   +  + +H              V M
Sbjct: 122 ELTVHAVAGTTADVSVDMGAPVV------LGESSATLAGETYH-----------GTGVDM 164

Query: 163 GNPHAIFFVE----DDLYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWER 217
           GNPH    V     + L    +   G L    P F   GVNL +        + +R  ER
Sbjct: 165 GNPHLACVVPGLSPEKLATLPV---GLLPEWDPAFFPAGVNLELVTAPVDGVVHMRVHER 221

Query: 218 GVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           GVG T +CG+   A+ VA+     +    V V++ GG + +     +   + G ++  + 
Sbjct: 222 GVGETLSCGTGTVAAAVAALRSTGEETGQVRVRIPGGEVQVTVSSESS-ELRGPSQLLFR 280

Query: 277 GKLD 280
           G ++
Sbjct: 281 GTVE 284


>gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 332

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT----HFDQIMLIHDFQDAS 59
           S +   K  G  N I VID         +D   A++   +       D +  + D  D +
Sbjct: 2   SRLSITKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGT 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRDG 114
             A+    N DGS    CGNGMRC  R L  R   +S+T  T       +      +   
Sbjct: 62  AQAW--FFNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVR 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V++       +   +A              P  H  LR    V+M N H +  V D 
Sbjct: 120 QVAVELPPADFSPQEAIVADVASPFVGQLL---PAYHPALRT-TAVAMPNSHLVSVV-DS 174

Query: 175 LYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
               DL + G+ +A     F  G N+S  +  +   + +RT+ERG GLT +CGS   AS 
Sbjct: 175 YDRADLVATGSRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSASR 234

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLI---EWHDNNHVFMTGEAKKEWEGKLD 280
                L      +AV ++ +GG   +   E        + G A   +E +LD
Sbjct: 235 AVLSRLGLAEPGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYEVELD 286


>gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83]
          Length = 278

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 15/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++  +   L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHAF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  ++       L     N+ +F  G  +    G L
Sbjct: 228 KKAALIPKSNESLELSVKNDEIFYKGTVRYIGMGVL 263


>gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20]
          Length = 273

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+I       + ++ A    +  +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLII-QSFKKKDFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N   L N    +++  G PH + FV++      L +
Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 169 LELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYN 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T    ++       L     N+ +F  G  +  
Sbjct: 226 TPEKAALIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
          Length = 247

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 107/278 (38%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  +K    GN  ++       +     A++     ++   D +++I   +    D    
Sbjct: 1   MQLSKYNASGNDFVIFHTFKSLNR-RELAMSLCDRFNSIGADGLIVILPSK--ECDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    +        K+ +F+T  GI+ A  + D  + V +  P 
Sbjct: 58  FYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKASIDNDF-VEVALTAP- 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                             +     + + F  + +    G PH + FV D+L  +DL+   
Sbjct: 116 -----------------KKLSEPFIEYGFEWSFY--DTGVPHLVTFV-DNLSKFDLSVCS 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            L  K+       N++ A +     L++RT+ERGV   T ACG+   AS        K N
Sbjct: 156 ELRKKY-----NANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFN 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             + V       L +++ D   ++  G+ K  ++  + 
Sbjct: 211 PCLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSIS 247


>gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum]
          Length = 351

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 217 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335

Query: 275 WEGKL 279
           +EG +
Sbjct: 336 FEGSI 340


>gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
 gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
          Length = 514

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E+ +  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 380 NSTLVSMGNPHCVLHLEN-VDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498

Query: 275 WEGKL 279
           +EG +
Sbjct: 499 FEGSI 503



 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 15/109 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILV--IDM----------RGCHDNITSDAINALSTDDNTHFDQ 48
           + S ++ F KM   G   ++  ID           R     + + A      +     D 
Sbjct: 57  LSSVILKFCKMHVRGQDFIIFHIDNLRVEYNNSSFRPSIQVLQNIAQRLCDREQGVGADN 116

Query: 49  IMLIHDFQDA---SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94
            +++    +      D  + I N DGS  ++C  G+ CV +++     +
Sbjct: 117 TLVLTPPPNDKLNETDFQLLIFNSDGSIAENCTTGVSCVCKYIVDYNLK 165


>gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
 gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
          Length = 241

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 99/270 (36%), Gaps = 41/270 (15%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  ++       D  ++ A       +    D ++++   +  + D   +  N 
Sbjct: 5   KYSASGNDFVIFHTFKKKDR-SNLAKKLCDRFNGIGADGLIVLLPHK--TYDFEWQFYNA 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DGSE   CGNG R    +     +      F T  G++ A+ + D          I++ +
Sbjct: 62  DGSEASMCGNGSRAAALYAYKYDLASSKMKFLTGAGVIEAEVDGD----------IVETQ 111

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
           L P  +   K D                      G PH +    D L ++++        
Sbjct: 112 LTP-YKELGKFDEWELF---------------DTGVPHLVKL--DKLENFNINEC----- 148

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247
           +   +    N++IA V     L +RT+ERGV   T ACG+  CAS + +        ++ 
Sbjct: 149 RELRYKHNANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLKARKEGLIGDSIK 207

Query: 248 VKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276
           V       L I     N ++  G  K+ ++
Sbjct: 208 VYPKSKEELEIS-LKRNRLYFKGRVKETFK 236


>gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
 gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
          Length = 273

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L I       + ++ A       +    D ++++   ++   D    
Sbjct: 1   MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSRN--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N+  L N    ++++ G PH + FV++  +   L 
Sbjct: 118 I----------LDTIPALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVKNKEWLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H
Sbjct: 168 TPELRALRHEF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFH 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G A+  
Sbjct: 225 NTPKKATLIPKSNESLELSLKNDGIFYKGVARYI 258


>gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695]
 gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695]
          Length = 273

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FVE+      L +  
Sbjct: 118 I-LDVIP------ALRCEKFFSSGSVLEHIPTFYLIDTGVPHLVGFVENKEGLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
 gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
          Length = 237

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 38/268 (14%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  +V D+ G   N    +   L    +   D ++ +          F+   N 
Sbjct: 5   KFTATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR--DGVIFVEKRD---GQFFMDYFNK 59

Query: 70  DGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG+    CGNG R  + +L     +K     F T  G +  K  ++G + + M       
Sbjct: 60  DGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNG-VMIKM------- 111

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
              P +    K+  D F           + F++++G PH + FV D++   D+   G  L
Sbjct: 112 ---PASNMPQKLTIDSF-----------SGFLLNVGVPHFVIFV-DNVETIDVNKIGKQL 156

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++  +V   +++ +RT+ERGV   T ACGS   AS       +     +
Sbjct: 157 RE----KLNSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYVFNKSNL--EKI 210

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            VK  GG L + + ++  +++ G  +  
Sbjct: 211 EVKARGGTLFVHFLNDG-IYLEGGVENV 237


>gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75]
          Length = 273

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 106/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKKDFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++  +   L +  
Sbjct: 118 I-LDIIP------ALRCEKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   + T 
Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51]
          Length = 273

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPNIIESNLGNYQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N   L N    +++  G PH + FV++      L 
Sbjct: 118 I----------LDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +
Sbjct: 168 TLELRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFY 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +  ++       L     N+ +F  G  +  
Sbjct: 225 NTPKKAALIPKSNESLELSLKNDEIFYKGAVRYI 258


>gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52]
          Length = 273

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N+  L N    +++  G PH + FVE+      L +
Sbjct: 109 IESNLGNYKILDTIPALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVENKEGLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   + 
Sbjct: 169 LELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYN 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
             +  ++       L     N+ +F  G  +  
Sbjct: 226 MPKKATLIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A]
          Length = 273

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 108/276 (39%), Gaps = 15/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +   +IP       +  ++F         +   +++  G PH + FV++      L +  
Sbjct: 118 I-LDVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  + +   + T 
Sbjct: 171 LRALRHAF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  ++       L     N+ +F  G  +    G L
Sbjct: 228 KKAALIPKSNESLELSLKNDEIFYKGAVRYIGMGVL 263


>gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
 gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
          Length = 309

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 105/306 (34%), Gaps = 48/306 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF-----------Q 56
            K  G GN  L++        +T   + ALS        D ++                +
Sbjct: 10  VKGHGTGNDFLLLADPEGALALTEADVAALSDRHRGLGADGVIRAVRSSAIADGASLLEE 69

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKEN 111
                 F+   N DGS  + CGNG+R  V FL +               T  G+L  +  
Sbjct: 70  HPEAVWFMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIE 129

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            D   +VDMG          L   FD        +G       R    +++ NPH +  +
Sbjct: 130 TD-RYAVDMGRWSAPGGAEALEAGFDA------SVGVAGLDSPRPGLRLALPNPHVVVAL 182

Query: 172 ED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----------------LDL 212
           ED   L   DL     +    P+   G N+ +      +                  + +
Sbjct: 183 EDVAQLESIDLTKPPRV---DPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRM 239

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGE 270
           R  ERGVG T +CG+ ACA+ +A              V + GG L +     +HV ++G 
Sbjct: 240 RVHERGVGETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGP 299

Query: 271 AKKEWE 276
           A+    
Sbjct: 300 AELVAR 305


>gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 278

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 100/283 (35%), Gaps = 36/283 (12%)

Query: 10  KMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD----ASVDAFI 64
           K  G  N  ++ +D   C      +             D ++ +   +D    ++ D F+
Sbjct: 13  KGHGTENDFVILVDTDNCLAPTPEEVAALCDRHAGIGADGLLRVVRARDINASSAADWFM 72

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS----ISV 118
              N DGS  + CGNGMR    +L      K K F   T  G      +        +SV
Sbjct: 73  DYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADERTADVSV 132

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE----DD 174
           +MGE  +                       V          V +GNPH    +     D 
Sbjct: 133 EMGEASVTG-----------------VSTCVLGQTTFAGLGVDVGNPHLACIIPTLTKDQ 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233
           L    +   G  +     F  GVN+ IA      ++ +R  ERGVG T +CG+     +V
Sbjct: 176 LEALPI-QDGFAVDT-EFFPAGVNVEIATELVDGAVYMRVNERGVGETRSCGTGTVATAV 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            A       +  V+V +LGG + +   D     + G ++  + 
Sbjct: 234 AALADAGLADGTVAVHVLGGTVQVTVKDGKAA-LRGPSEIVFR 275


>gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 114/318 (35%), Gaps = 59/318 (18%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI--------- 52
           + M  F K  G  N  + I       ++  D +  ++        D ++ +         
Sbjct: 17  AGMTRFIKAHGTQNDFVFIVDPTVTVDLNEDRVRRIADRHAGIGGDGVIRVATAASLIDA 76

Query: 53  ---------HDFQDASV-----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKR 94
                     D ++        + F+   N DGS  + CGNG+R     L +        
Sbjct: 77  NVLDPNILQPDPENPRATIHEDEWFMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGGE 136

Query: 95  KSFTFE----TIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
             F  E    T  G  + K +   +    +SVDMG         P+           F++
Sbjct: 137 PKFPIEIGVGTRAGRKIVKIHEADAQQAKVSVDMGR--------PVVTGMSTASIGGFNL 188

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS--FGNLLAKHP-MFSEGVNLSIAR 203
             +          V MGNPH    + + L    LA    G  +      F  GVN+ +A 
Sbjct: 189 AGLG---------VDMGNPHLAAIIPN-LTAEKLAELPIGEKVTWDEEFFPTGVNVEVAT 238

Query: 204 VTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN 262
                ++ +R  ERGVG T +CG+     +V A     K    V V++ GG + ++   +
Sbjct: 239 PLEDGAVHMRVHERGVGETRSCGTGTVATAVAALADAGKEFGTVVVRVPGGEVEVDITAD 298

Query: 263 NHVFMTGEAKKEWEGKLD 280
             V +TG ++    G++ 
Sbjct: 299 TAV-LTGPSQIVARGEMS 315


>gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429]
 gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429]
          Length = 232

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 100/266 (37%), Gaps = 39/266 (14%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  ++ D+              +    +   D  + +          F+   N 
Sbjct: 5   KYTANGNSFILFDITDTSLTSNEKKELVIKKCQDR--DGALFVE---TKDGMYFMEYYNK 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS+   CGNG R  + +L    K     F T  GI+  K   +  I + M  P++  K+
Sbjct: 60  DGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKIL-NEKILIKMPNPLVARKI 118

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
                                ++   + +++++G PH + FV DD+ H D+ + G  +  
Sbjct: 119 ---------------------NVENFSGYLLTVGVPHFVTFV-DDIEHIDVKNIGKKIRN 156

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248
                   N++     S   + +RT+ERGV   T +CGS   AS +           V V
Sbjct: 157 ----KLDANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV-----LNESKVKV 207

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274
              GG L I   ++   ++ G+ +  
Sbjct: 208 HTRGGILHIYTLNDGF-YLEGDVENV 232


>gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
 gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
          Length = 302

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 111/306 (36%), Gaps = 47/306 (15%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIM----------- 50
           S+ + F K  G  N  +++       +I +  + AL         D ++           
Sbjct: 4   STGLRFVKGHGTQNDFVILADPAADLDIDASLVAALCDRPRGIGADGLLRVARAGALVAA 63

Query: 51  -LIHDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGI 105
            ++    D     D F+   N DGS  + CGNG+R    FL +R  +    FT  +  G 
Sbjct: 64  GVLEMLPDGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGG 123

Query: 106 LVAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
                +   +    ++V+MG+  +D                 F         L     V 
Sbjct: 124 RPVTVHSHDALSADVTVEMGQATVD-----------------FDAAVRIGDDLYVGTKVD 166

Query: 162 MGNPHAIFFVED-DLYH-YDLASFGNLLAKHPMFSEGVNLSI---ARVTSLESL--DLRT 214
           +GNPH    V D D+     +     +  +   F  G N+ +     V     L   +R 
Sbjct: 167 VGNPHLACVVGDLDVDELAAVDFTAGVRLEAADFPHGANVELLTRPAVADDGVLTAHMRV 226

Query: 215 WERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +ERGVG T +CG+   A+  A+     +    + + + GG +L+         + G +  
Sbjct: 227 FERGVGETRSCGTGLVAAAAAAFAGRGEPGGDLRIHVPGGTVLVTIAATGT-RLRGPSML 285

Query: 274 EWEGKL 279
             EG+L
Sbjct: 286 VAEGEL 291


>gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32]
          Length = 273

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +    IP       +  ++F         +   +++  G  H + FVE+  +   L +  
Sbjct: 118 I-LDTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVENKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKATLIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|152993982|ref|YP_001359703.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1]
 gi|151425843|dbj|BAF73346.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1]
          Length = 248

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 36/271 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            K    GN  ++  +   H + +  A       +    D ++++   +    D      N
Sbjct: 4   TKYSANGNDFVIF-IAQEHADRSELAKKLCHRQNGVGADGMVVVLPHKK--YDFEWEFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126
            DGSE   CGN  R V  F   +   K     F T  G++ A  N    +S DM EP + 
Sbjct: 61  SDGSEADMCGNASRAVAHFAHEKGISKDGKAEFLTGAGVIRATINGLYVVS-DMVEPDIQ 119

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              I                           +++  G PH +  +++++  +DL     L
Sbjct: 120 RDDIDENGE--------------------RWWLIDSGVPHLVA-IQENIDSFDLTEARRL 158

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
             K+       N++I R    ++L +RT+ERGV   T ACG+   A  +      K    
Sbjct: 159 REKY-----NANVNICR-LDGDTLYVRTYERGVEDETLACGTGMVACYIRLHKEGKVPDQ 212

Query: 246 VSVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275
           V V    G  L + + +N      G+  K +
Sbjct: 213 VKVHPKSGDELYVSY-ENGVYRFGGKVTKTF 242


>gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
 gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
          Length = 277

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++        + +  A+           D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGS  ++CGNG+R + R+L    R  +     ET   I     ++D  I+VD+G 
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +  +  P      K D  ++         +    ++SMGNPH I + ++D + +    
Sbjct: 123 AHMLTE--PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTF-YEE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L  ++      VN+ +  V +   L L T+ERG G T ACG+   A+V ++    + 
Sbjct: 180 MGRLSKRYD-----VNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQV 234

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             N  + V + GG L ++W  N+H+  +G+  K   G  
Sbjct: 235 LPNEIIKVYLPGGILEVKWDLNDHLLASGKTTKVCCGTY 273


>gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
 gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
          Length = 277

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 18/279 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++        + +  A+           D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGS  ++CGNG+R + R+L    R  +     ET   I     ++D  I+VD+G 
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKD-VITVDLGL 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +  +  P      K D  ++         +    ++SMGNPH I + ++D + +    
Sbjct: 123 AHMLTE--PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTF-YEE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L  ++      VN+ +  V +   L L T+ERG G T ACG+   A+V ++    + 
Sbjct: 180 MGRLSKRYD-----VNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQV 234

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             N  + V + GG L ++W  N+H+  +G+  K   G  
Sbjct: 235 LPNEIIKVYLPGGILEVKWDLNDHLLTSGKTTKVCCGTY 273


>gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411]
 gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
 gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411]
 gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
          Length = 288

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 110/303 (36%), Gaps = 47/303 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52
           M++F K  G  N  +V+       N+T D +  L+        D ++ +           
Sbjct: 1   MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGIL 106
                      + F+   N DGS  + CGNG+R     L  + K    + F   T  G  
Sbjct: 61  LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGKVTVGEQFGIGTRAGRK 120

Query: 107 VAKENR-------DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           + + +           +SV+MG P             + +      +G +    L     
Sbjct: 121 MVEVHELSGENQEHAIVSVEMGAP-------------EVLGVSTAQVGDLKVAGLG---- 163

Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWE 216
           V MGNPH    V +   L    L     +      F  GVNL +        ++ +R  E
Sbjct: 164 VDMGNPHLAAVVPNLTALELQKLPIDQQVQFDTEFFPAGVNLEVLTPLDNAGAVHMRVHE 223

Query: 217 RGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           RGVG T +CG+    A+V A          V+V + GG + +E  ++  V + G +    
Sbjct: 224 RGVGETRSCGTGTVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSV-LRGPSAIVA 282

Query: 276 EGK 278
            G+
Sbjct: 283 WGR 285


>gi|257458717|ref|ZP_05623841.1| diaminopimelate epimerase [Campylobacter gracilis RM3268]
 gi|257443906|gb|EEV19025.1| diaminopimelate epimerase [Campylobacter gracilis RM3268]
          Length = 292

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 107/297 (36%), Gaps = 33/297 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA--SVDAF 63
           +  +K    GN  ++        + +  A       D    D ++++    +    ++  
Sbjct: 1   MKISKYNASGNDFVIF-TDSVKADRSKLARELCDRRDGVGADGLIVVLPKFNGIEGINFE 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENR--DGSISVDM 120
               N DGS    CGNG R V  +     +  +S  F +  G++  +      G++S  M
Sbjct: 60  WEFYNSDGSSADMCGNGSRAVCMYAYENFLAAQSMKFLSGAGVISGEIFGIFGGNLSESM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-------------NPFVVSMGNPHA 167
                + + +     F+        +  V  +  R               +  + G PH 
Sbjct: 120 ---RGELRNVSFGEIFNLRPNAHALVANVEVMLTRPKRLGESFEEAGLTWYFYNTGVPHL 176

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGV-GLTA 223
           + FV       DL  F  +LA+        N++ A V S    + L +RT+ERGV   T 
Sbjct: 177 VTFVS------DLNEFDAVLARDLREKYNANVNYALVQSRLASKILKVRTFERGVEAETL 230

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           ACG+   A  +A          + V    G  L +   D   ++  G+ +  ++G+ 
Sbjct: 231 ACGTGMAACFIAGVENMGLASDIRVIPASGETLNLRLGDGGKIYFRGDVRHTFDGEF 287


>gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
 gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
          Length = 257

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 107/281 (38%), Gaps = 38/281 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-------FQDASVD 61
            K    GN  ++       D  +  A       +    D ++++            + +D
Sbjct: 4   TKYSANGNDFVIFHTFVKKDR-SLLAKKLCHRQNGIGADGLIVLLPKSKNEIGGDKSKID 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              +  N DGSE   CGNG R    +   + + +    F T  GI+ A  + D  +S ++
Sbjct: 63  FEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVLS-EL 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P +             +D++    G       ++ +++  G PH ++F + D+  +D+
Sbjct: 122 TPPKI-------------IDKEILENG-------KSWWLLDTGVPHLVYFTK-DITKFDI 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           A    L  K+       N++IA +     L +RT+ERGV   T ACG+   A    +   
Sbjct: 161 AEARELRDKY-----NANVNIAFIEGKN-LRVRTYERGVEDETLACGTGMAACFYRAYSE 214

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                 + V    G  L    ++  +   G  +  +  ++D
Sbjct: 215 KVVGNDIEVYPTSGETLYLGVNDRTITFRGRVRSIFSAEID 255


>gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
 gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
          Length = 249

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 98/274 (35%), Gaps = 32/274 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+  AK    GN  ++       D  +  A       +    D ++++   +    D   
Sbjct: 1   MLQIAKYCASGNDFVIFHAFEKADR-SQLARILCDRQNGIGADGLIVLVPHES--HDFEW 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    +     +   S  F T  G++ A    D  +  D+  P
Sbjct: 58  EFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVEGD-MVQSDLTPP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           ++  + I  +                        +++  G PH I F + D+ H+++   
Sbjct: 117 VIVNQEIVESG--------------------MKWWLIDTGVPHLITF-DADIEHFNID-L 154

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
              L          N++IA +    +L +RT+ERGV   T ACG+   AS   +      
Sbjct: 155 ARTLRHR----YNANVNIASINLDGTLRVRTYERGVEDETLACGTGMAASFYRAVQERLV 210

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +    V    G  L    +   +   GE K  +E
Sbjct: 211 DENTKVFPKSGETLYLGFEEGVITFKGEVKGVFE 244


>gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1]
 gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1]
          Length = 282

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 104/297 (35%), Gaps = 51/297 (17%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD--------------ASVDAFI 64
           +  D  G ++    +             D ++ +   QD                 + F+
Sbjct: 2   VYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLADCAAGQAEWFM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRD------ 113
              N DGS  + CGNG R +  F     L  R   + F   T  G+ +     +      
Sbjct: 62  DYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVKILTSLGEVEGLGK 121

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
               V+MG             S+ + D D + +             V MGNPH +  +ED
Sbjct: 122 DVFRVEMG-------------SWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVIED 168

Query: 174 DLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAA 224
                      +L+AK    P      N+   R+             +R  ERG G T +
Sbjct: 169 AFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLS 228

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A     GK+++
Sbjct: 229 CGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 281


>gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100]
 gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100]
          Length = 249

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 102/273 (37%), Gaps = 32/273 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++        + +  A    +  +    D +++I        D    
Sbjct: 1   MKFYKYCASGNDFVIF-ADSEKKDRSELAKILCNRYEGIGADGLIVIVPHD--RYDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
             NCDGS+   CGNG R    F    +K+  +  F T  G++ +  + D           
Sbjct: 58  FYNCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIKSFVDDD----------- 106

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
               ++ +  S  K  ++ F          R     + G PH + FV DDL  +D+    
Sbjct: 107 ----IVEIKLSGIKDIKEAFEYKD------RIWQGCNTGVPHIVTFV-DDLSEFDIN--- 152

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             L K        N++ A+V   E + +RT+ERGV   T ACG+   A    +    K  
Sbjct: 153 --LCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLACGTGMGACFYLAYLNQKVK 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             + +K      L    +   +F  G+ K  +E
Sbjct: 211 DDILIKPKSNESLYFRLEEEQIFFRGKVKCCFE 243


>gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula]
          Length = 221

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +    +  A+     +     D ++ +    D  
Sbjct: 73  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGID-G 131

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F++       R SFT  T  G +V +   DG++
Sbjct: 132 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191

Query: 117 SVDMGEPILDWKLIPLARSFDKM 139
            VDMGEP+L    +P   S +K+
Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214


>gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27]
 gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27]
          Length = 272

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L I       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +      I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N   L N    +++  G PH + FV++      L 
Sbjct: 118 I----------LDTIPALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVKNKKLLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   +
Sbjct: 168 TLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFY 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            T +   +       L     N+ +F  G  +  
Sbjct: 225 NTPKKAILIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57]
          Length = 273

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 19/273 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L++       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIV-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  RCV  F              I             IS+ + EP +
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHA---------IASKNHVFLAGKREISICIEEPNI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLAS 182
               +   +  D +   R      N   L N    +++  G PH + FV++      L +
Sbjct: 109 IESNLGNYKILDTIPALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVKNKGLLNSLNT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
                 +H       N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + 
Sbjct: 169 LELRALRHEF---NANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYN 225

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           T +  ++       L     N+ +F  G  +  
Sbjct: 226 TPKKAALIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
 gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
          Length = 329

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 26/291 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-------TDDNTHFDQIMLIHDFQD 57
           M+   ++ G  N  +++D       +  D +  L+       T      D ++++     
Sbjct: 1   MIKLLRVHGSENSFILLDQEQLEIPMNLDQLIQLAIQVTNNQTGLLGGADGLLVVSSSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           A V   +++IN DGS    CGNG+R V R+L  + +   F  +T      A  +     +
Sbjct: 61  AGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTD----QADLHVGRVAT 116

Query: 118 VDMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFV 171
           +  G P    ++ P++ +   +     ++D+    PV     +  F  V++ NPH I   
Sbjct: 117 IGNGLPTYQVEISPVSFNTKNLPMQIENQDKLFNAPVRDFDDQLLFSAVAVPNPHLIAID 176

Query: 172 EDD-LYHYDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            ++ L    LA  G+ L A +P F +GVN+S  RV     L ++T+ERGVG T ACG+  
Sbjct: 177 NNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKK 273
            A+ +    L+    + +    +   GG +       H    + + G A  
Sbjct: 237 SATSLVWSLLNDGQTRLDEVNDIFNPGGMVKTRVNQIHGAYTIDLIGNATF 287


>gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12]
 gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12]
          Length = 272

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 21/274 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L I       + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFL-ITQSFKKKDFSNLAKQVCHRHEGFGADGLVIVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDLA 181
           +           D +   R      N+  L N    +++  G PH + FV++  +   L 
Sbjct: 118 I----------LDTIPNLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVKNKEWLNSLN 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +      +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +
Sbjct: 168 TLELRALRHAF---NANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFY 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
              +  ++       L     N+ +F  G  +  
Sbjct: 225 NAPKKATLIPKSNESLELSLKNDGIFYKGIVRYI 258


>gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
 gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
          Length = 311

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 102/316 (32%), Gaps = 63/316 (19%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---------- 55
            FAK    GN  +++        ++ + + A+         D ++               
Sbjct: 13  RFAKGHATGNDFVLVADPEAKLELSPEQVAAVCHRRFGIGADGLIRAVPTSLVPGYEEQF 72

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
             +     F+   N DGS  + CGNG+R    +L +         +SF   +  G+    
Sbjct: 73  LDNPKAYWFMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEIT 132

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              DG  +V++G   L ++     RS D M      + P           ++MGNPH + 
Sbjct: 133 RLADG-YAVNLGPWGLIFEQEATERSIDSM------VKPRGWEQALPALSITMGNPHTVV 185

Query: 170 FVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-------ESLDLRTWERGVG 220
            + D   L   DL          P+   G N+     +           + +R +ERGVG
Sbjct: 186 ALPDAQMLEELDLFQ---APEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVG 242

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW-----------------HDNN 263
            T +CG+ A     A+   +       +         +W                     
Sbjct: 243 ETLSCGTGA--CAAAAAVRYWARSTALIN--------QWAVTVPGGVVGVEFRSNEAGGE 292

Query: 264 HVFMTGEAKKEWEGKL 279
              ++G A     G +
Sbjct: 293 DTILSGPADLVARGVI 308


>gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8]
 gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8]
          Length = 273

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 15/271 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKRDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F    +   K   F   +  +         I  ++G   
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +    IP  R  +    D           +   +++  G PH + FV++  +   L +  
Sbjct: 118 I-LDTIPALRCKNFFSSDSVL------EHISTFYLIDTGVPHLVGFVKNKEWLNSLNTLE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H       N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T 
Sbjct: 171 LRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTP 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +  ++       L     N+ +F  G  +  
Sbjct: 228 KKAALIPKSNESLELSLKNDGIFYKGAVRYI 258


>gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654]
          Length = 156

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P   W  IPL++  D                  +P  V MGNPHA+FFV DD+   D
Sbjct: 1   MGHPQTMWDEIPLSKPMDTAHL----------PLDCDPMAVGMGNPHAVFFV-DDVGAVD 49

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  +   P+F +  N+  A V S + + +R WERG G+T ACGS ACA+ VA+   
Sbjct: 50  VEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAER 109

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             T R V +++ GG L ++W D+  V+MTG     ++  L 
Sbjct: 110 GLTERKVRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDATLT 149


>gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
 gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
          Length = 285

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 107/304 (35%), Gaps = 48/304 (15%)

Query: 12  EGIGNKILVI---DMRGCHD-NITSDAINALSTDD-NTHFDQIMLIHDF---QDASV--- 60
            G  N  +V+   D  G  +  + +  +  L         D ++ +       DA     
Sbjct: 5   HGTQNDFVVLPDPDGTGWPESRLDAAMVRRLCERRAGLGGDGVLRVVPSVHVPDAPAVLG 64

Query: 61  ------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK------RKSFTFETIRGILVA 108
                 + F+   N DGS  + CGNG+R  +  L +                T  G    
Sbjct: 65  EALGRCEWFMDHRNADGSTAEMCGNGIRLFLHVLVTEGLVERTACADGIWVGTRGGPRRV 124

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               DG   VDMG         P       +D   F               VSMGNPH  
Sbjct: 125 GATADGGYWVDMGPAR------PFGAGTAHLDGASF-----------PGRAVSMGNPHLA 167

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAAC-G 226
              + D+   DLA+   +     +F +GVN+    V      + LR  ERGVG T +C  
Sbjct: 168 VLTDVDVDTLDLATAPAV--DAALFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSCGT 225

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            A  A+  A          V+V + GG L +   +   V ++G A     G+L +   +W
Sbjct: 226 GACAAAWAALEAAGAATGTVTVDVPGGRLGVTVDEQTTV-LSGPAVVVATGELTV---EW 281

Query: 287 IKKN 290
           ++  
Sbjct: 282 LRAT 285


>gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
 gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
          Length = 252

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 28/278 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  AK    GN  ++       +     A       D    D +++I    +   D    
Sbjct: 1   MKIAKYSANGNDFVIFHDDKKEERY-ELAKTLCHRQDGIGADGLIVIVP--NDEYDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    +  +      +  F T  G++ A+   +   S  +   +
Sbjct: 58  FYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESEL 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              ++I     FD                  N ++++ G PH + +  D++  +D     
Sbjct: 118 TPPEIIETEIEFDG----------------HNWWLINTGVPHLVRYT-DNIKEFDTEE-- 158

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
              A+   +    N++I  +    +L +RT+ERGV   T ACG+   A    +       
Sbjct: 159 ---ARELRYVYNANVNIMYIED-GNLRVRTYERGVEDETLACGTGMAACFYRAYKEGNVQ 214

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + V    G  L   ++   +   G  KK +E + D+
Sbjct: 215 NNIEVYPTSGDTLYLGYNGKTITFKGRVKKTFETEWDV 252


>gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7]
          Length = 273

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 107/276 (38%), Gaps = 25/276 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKKDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K   F   +  +  +     +I  ++G   
Sbjct: 58  FYNSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYD 179
           +    IP       +   +F         +   +++  G PH + FV++      L   +
Sbjct: 118 I-LDTIP------ALKCKKFFTNDSVLASIPTFYLIDTGVPHLVGFVKNKGLLNSLDTLE 170

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
           L +      +H       N++IA + + +++ L+T+ERGV   T ACG+   A  +A+  
Sbjct: 171 LRTL-----RHDF---NANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACV 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            + T +  ++       L     N+ +F  G  +  
Sbjct: 223 FYNTPQNATLIPKSNEFLELSLKNDEIFYKGAVRYI 258


>gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
 gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
          Length = 311

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 109/306 (35%), Gaps = 47/306 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------L 51
           +   K  G GN  + +        +T + +  A         D  +             L
Sbjct: 14  LTLTKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKL 73

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGIL 106
           I +  DA    F+   N DGS  + CGNG+R  V +L           ++    T  G+ 
Sbjct: 74  IEEHPDAV--WFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGVK 131

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
                 +G  ++DMG          +     +   +   +        R    +SMGNPH
Sbjct: 132 TVARTEEG-YAIDMGPWSF------IHGDAAREGGEDCLVSARGLKTPRAGLSISMGNPH 184

Query: 167 AIFFV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDLRTWE 216
            +  +  E  L   DL S    +   P+   G N+       L+        ++ +R  E
Sbjct: 185 TVVMLGSEGKLDGLDLHSL-PQVNPAPV--NGTNVEFVVPVDLDVESGAHVGAIRMRVHE 241

Query: 217 RGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGE 270
           RGVG T +CG+ ACA+  A+      +      V + GG L + +     D  HV + G 
Sbjct: 242 RGVGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGP 301

Query: 271 AKKEWE 276
           A+    
Sbjct: 302 AQMVAT 307


>gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
 gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
          Length = 311

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 47/304 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------L 51
           +   K  G GN  + +        +T + +  A         D  +             L
Sbjct: 14  LTLTKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKL 73

Query: 52  IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGIL 106
           + +  DA    F+   N DGS  + CGNG+R  V +L           ++    T  G+ 
Sbjct: 74  LEEHPDAV--WFMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVK 131

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
                 +G  ++DMG          +     +   +   +        R    +SMGNPH
Sbjct: 132 TVARTEEG-YAIDMGPWSF------IHGEAAREGGEDCLVSARGLKTPRAGLSISMGNPH 184

Query: 167 AIFFVEDD--LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE--------SLDLRTWE 216
            +  +  D  L   DL S    +   P+   G N+       L+        ++ +R  E
Sbjct: 185 TVVMLGSDGKLDGLDLHSL-PQVNPAPV--NGTNVEFVVPVDLDVESGAQVGAIRMRVHE 241

Query: 217 RGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGE 270
           RGVG T +CG+ ACA+  A+      +      V + GG L + +     D  HV + G 
Sbjct: 242 RGVGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGP 301

Query: 271 AKKE 274
           A+  
Sbjct: 302 AQMV 305


>gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
 gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
          Length = 313

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 50/314 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA------ 58
           V FAK  G  N  +++        +T   ++AL         D ++ +   + A      
Sbjct: 21  VQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 80

Query: 59  --------SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
                   + D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 81  ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 140

Query: 109 KENRDG-------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             +           ++V+MG+  L      L      +   RF               + 
Sbjct: 141 VLHGFDLAHRSRAEVTVEMGKVNL------LGSGSAVVGGRRF-----------TGLGID 183

Query: 162 MGNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           +GNPH    V+  L   +LA+      +      F +GVN+ +       ++ +R  ERG
Sbjct: 184 VGNPHLAC-VDTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERG 242

Query: 219 VGLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+   A+ VA+          + V++ GG +      +   F+ G ++    G
Sbjct: 243 VGETRSCGTGTVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATG 301

Query: 278 KLDIKTGKWIKKNE 291
           +L    G+W + ++
Sbjct: 302 EL---AGEWWQSHQ 312


>gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
 gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
          Length = 293

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 50/314 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA------ 58
           + FAK  G  N  +++        +T   ++AL         D ++ +   + A      
Sbjct: 1   MQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 60

Query: 59  --------SVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
                   + D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 120

Query: 109 KENRDG-------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             +           ++V+MG+  L      L      +   RF               + 
Sbjct: 121 VLHGFDLAHRSRAEVTVEMGKVNL------LGSGSAVVGGRRF-----------TGLGID 163

Query: 162 MGNPHAIFFVEDDLYHYDLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           +GNPH    V+  L   +LA+      +      F +GVN+ +       ++ +R  ERG
Sbjct: 164 VGNPHLAC-VDTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERG 222

Query: 219 VGLTAACGSAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+   A+ VA+          + V++ GG +      +   F+ G ++    G
Sbjct: 223 VGETRSCGTGTVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATG 281

Query: 278 KLDIKTGKWIKKNE 291
           +L    G+W + ++
Sbjct: 282 EL---AGEWWQSHQ 292


>gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
 gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
          Length = 307

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 120/319 (37%), Gaps = 53/319 (16%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI----------- 52
           MV FAK  G  N  L+         +T   + A+         D ++ +           
Sbjct: 1   MVSFAKGHGTQNDFLIFPDDLVSIELTESLVAAVCDRQRGLGADGVLRVARAGKLVDAGV 60

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRG 104
                    + D F+   N DGS  + CGNG+R    ++        +   +    T  G
Sbjct: 61  LTALPEGVKADDWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAG 120

Query: 105 ILVAKEN----RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           +     +    R   + V+MG+P             + +      IG  N+        V
Sbjct: 121 LRAVSIDELSRRHAVVGVNMGQP-------------EVLGLATAFIGSGNNALKFAGIGV 167

Query: 161 SMGNPHAIFFVED----DLYHYDLASFG----NLLAKHPMFSEGVNLSIARVTS-LESLD 211
            +GNPH    +       L   +L + G     + A   MF  G+NL I       +S+ 
Sbjct: 168 DVGNPHLACVMPGLSAAGLAELELEAAGSVAKPVRADEAMFPNGLNLEIVTPLDASDSVS 227

Query: 212 LRTWERGVGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH------ 264
           +R  ERGVG T +CG+    A++ A     +T  AV+VK+ GG + ++ H  ++      
Sbjct: 228 MRVIERGVGETRSCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVHKASNADGAFS 287

Query: 265 VFMTGEAKKEWEGKLDIKT 283
             +TG +     G ++++ 
Sbjct: 288 ATLTGPSVIHTLGDIELEA 306


>gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4]
 gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4]
          Length = 289

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 113/302 (37%), Gaps = 48/302 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53
           +DF+K  G  N  +V+       ++++  + AL         D I+ +            
Sbjct: 1   MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAAAGVL 60

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRG---- 104
                  +  D F+   N DGS  + CGNG+R    +L       R  F   +  G    
Sbjct: 61  AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRSTGLETRDEFVVGSRAGGKPV 120

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           I+ + +   G ++VDMG          L  S   +D   F           N   + +GN
Sbjct: 121 IVHSADGSAGEVTVDMGVVR------DLGTSAATIDGKVF-----------NGIGIDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219
           PH    V+  L    L++    L   P      F  GVN+ I       ++D+R  ERGV
Sbjct: 164 PHLAC-VDAHLTAASLSAL--DLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+  A+      +   V V++ GG + +         + G +     G 
Sbjct: 221 GETRSCGTGTVAAATAALRFDGADSGEVKVRIPGGQVTVALS-GGRATLRGPSVLVASGN 279

Query: 279 LD 280
           LD
Sbjct: 280 LD 281


>gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567]
 gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567]
          Length = 312

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 115/307 (37%), Gaps = 48/307 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54
            K  G GN  + +        + +D I            D  +             L+ +
Sbjct: 17  TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNLLEE 76

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAK 109
             DA    F+   N DGS  + CGNG+R  V +L           ++    T  G+ +  
Sbjct: 77  HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +G  ++DMG          +     +   +  H+     +  R    +SMGNPH + 
Sbjct: 135 RTEEG-YAIDMGPWSF------IHGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVV 187

Query: 170 FV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERG 218
            +  E  L   DL S   +   +P   +G N+       LE+         + +R +ERG
Sbjct: 188 MLGQEGKLDGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERG 244

Query: 219 VGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAK 272
           VG T +CG+ ACA+  A+      +      V + GG L + +     D  HV + G A+
Sbjct: 245 VGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQ 304

Query: 273 KEWEGKL 279
              + +L
Sbjct: 305 TVAKIEL 311


>gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
 gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
          Length = 292

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 46/302 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60
           + + FAK  G  N  +++        +T+  + AL         D ++ +     A    
Sbjct: 2   AQMIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 61

Query: 61  ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL 106
                       D ++   N DGS  Q CGNG+R    +L       R  F   ++ G  
Sbjct: 62  VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPR 121

Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
               +   +    +SVDMG+         L      +   RFH              V +
Sbjct: 122 PVTCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDV 164

Query: 163 GNPHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           GNPH          D L   D+ +   +      F +GVN+ +       ++ +R  ERG
Sbjct: 165 GNPHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERG 222

Query: 219 VGLTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+    A+V A   +      ++V + GG +++   D    F+ G +     G
Sbjct: 223 VGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARG 281

Query: 278 KL 279
            L
Sbjct: 282 DL 283


>gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 292

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 110/302 (36%), Gaps = 46/302 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60
           + + FAK  G  N  +++        +T+  + AL         D ++ +     A    
Sbjct: 2   AQMIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 61

Query: 61  ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGIL 106
                       D ++   N DGS  Q CGNG+R    +L       R  F   ++ G  
Sbjct: 62  VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPR 121

Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
               +   +    +SVDMG+         L      +   RFH              V +
Sbjct: 122 PVTCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDV 164

Query: 163 GNPHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           GNPH          D L   D+ +   +      F +GVN+ +       ++ +R  ERG
Sbjct: 165 GNPHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERG 222

Query: 219 VGLTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+    A+V A   +      ++V + GG +++   D    F+ G +     G
Sbjct: 223 VGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARG 281

Query: 278 KL 279
            L
Sbjct: 282 DL 283


>gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A]
 gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
 gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
          Length = 289

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60
           + FAK  G  N  +++        +T+  + AL         D ++ +     A      
Sbjct: 1   MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60

Query: 61  ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    +SVDMG+         L      +   RFH              V +GN
Sbjct: 121 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 163

Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          D L   D+ +   +      F +GVN+ +       ++ +R  ERGVG
Sbjct: 164 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 221

Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+V A   +      ++V + GG +++   D    F+ G +     G L
Sbjct: 222 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTITDATS-FLRGPSVLVARGDL 280


>gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104]
 gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104]
          Length = 294

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 123/312 (39%), Gaps = 45/312 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52
           + FAK  G  N  +++        +T+  + AL         D ++            ++
Sbjct: 1   MKFAKGHGTENDFVLLCDTPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60

Query: 53  HDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
               D  A  D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    +SVDMG+           ++F+     R   G            V +GN
Sbjct: 121 TVHAADATGADVSVDMGKANTLGS---GGKAFEATVGGRRFAG----------LAVDVGN 167

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          D+L   D+A+   +      F +GVN+ +    +   + +R  ERGVG
Sbjct: 168 PHLACLDPELSVDELAALDVAA--PVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVG 225

Query: 221 LTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+   A+ VA+      +   ++V++ GG +++   D    ++ G +     G++
Sbjct: 226 ETRSCGTGTVAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI 284

Query: 280 DIKTGKWIKKNE 291
              + +W ++ +
Sbjct: 285 ---SEEWWQQAQ 293


>gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase
           Mycobacterium Tuberculosis Dapf
          Length = 290

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60
           + FAK  G  N  +++        +T+  + AL         D ++ +     A      
Sbjct: 2   MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 61

Query: 61  ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 62  DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 121

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    +SVDMG+         L      +   RFH              V +GN
Sbjct: 122 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 164

Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          D L   D+ +   +      F +GVN+ +       ++ +R  ERGVG
Sbjct: 165 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 222

Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+V A   +      ++V + GG +++   D    F+ G +     G L
Sbjct: 223 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL 281


>gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv]
 gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97]
 gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11]
 gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987]
 gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92]
 gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503]
 gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17]
 gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85]
 gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210]
 gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207]
 gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506]
 gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475]
 gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11]
 gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148]
 gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           4207]
          Length = 289

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 46/300 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV---- 60
           + FAK  G  N  +++        +T+  + AL         D ++ +     A      
Sbjct: 1   MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 60

Query: 61  ----------DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    +SVDMG+         L      +   RFH              V +GN
Sbjct: 121 TCHHVEAAYADVSVDMGKAN------RLGAGEAVVGGRRFH-----------GLAVDVGN 163

Query: 165 PHAIFF----VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          D L   D+ +   +      F +GVN+ +       ++ +R  ERGVG
Sbjct: 164 PHLACVDSQLTVDGLAALDVGA--PVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVG 221

Query: 221 LTAACGSAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+V A   +      ++V + GG +++   D    F+ G +     G L
Sbjct: 222 ETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL 280


>gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
 gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
          Length = 289

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 114/302 (37%), Gaps = 48/302 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           +DF+K  G  N  +V+       ++++  + AL         D I+ +            
Sbjct: 1   MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAGAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRG---- 104
                  +  D F+   N DGS  + CGNG+R    +L       R  F   +  G    
Sbjct: 61  AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRAAGLESRDEFVVGSRAGGKPV 120

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           I+ + +   G ++VDMG          L  S   +D   F           N   + +GN
Sbjct: 121 IVHSADGAFGEVTVDMGVVR------DLGTSAATIDGKVF-----------NGIGIDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219
           PH    V+  L    L++    L   P      F  GVN+ I       ++D+R  ERGV
Sbjct: 164 PHLAC-VDAHLTAASLSAL--DLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+  A+      +   V+V++ GG + +         + G +     G 
Sbjct: 221 GETRSCGTGTVAAATAALRFDGADSGEVNVRIPGGQVTVAVS-GGRATLRGPSVLVASGT 279

Query: 279 LD 280
           LD
Sbjct: 280 LD 281


>gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
 gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
          Length = 312

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 115/307 (37%), Gaps = 48/307 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54
            K  G GN  + +        + +D I            D  +             ++ +
Sbjct: 17  TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNMLEE 76

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-----SRMKRKSFTFETIRGILVAK 109
             DA    F+   N DGS  + CGNG+R  V +L           ++    T  G+ +  
Sbjct: 77  HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +G  ++DMG          +     +   +  H+     +  R    +SMGNPH + 
Sbjct: 135 RTEEG-YAIDMGPWSF------IHGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVV 187

Query: 170 FV--EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERG 218
            +  E  L   DL S   +   +P   +G N+       LE+         + +R +ERG
Sbjct: 188 MLGQEGKLDGLDLNSQPQV---NPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERG 244

Query: 219 VGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAK 272
           VG T +CG+ ACA+  A+      +      V + GG L + +     D  HV + G A+
Sbjct: 245 VGETLSCGTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQ 304

Query: 273 KEWEGKL 279
              + +L
Sbjct: 305 TVAKIEL 311


>gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
 gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
          Length = 332

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 26/296 (8%)

Query: 6   VDF--AKMEGIGNKILVIDMRGCHDNITS----DAINALSTDDNT-HFDQIMLIHDFQDA 58
           + F   K  G  N I ++D R      T     D +  +         D +  + D +  
Sbjct: 1   MKFELLKAHGSSNDIFIVDGRPERIFSTPAEVADFVRLVCDRQGPLGGDGLYFVDDSRAV 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRD 113
               F    N DGS  + CGNG+RCV R +  R +  +    T  G    +         
Sbjct: 61  PEAFF---FNPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S++V++         +P+  +  +       + P  H  LR    V++ N H +  V+D
Sbjct: 118 WSVAVELPPVTFRAADVPVVTTGAEHVD---TVIPTLHPALRF-TGVAVPNSHLVAVVDD 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-SLESLDLRTWERGVGLTAACGSAACAS 232
              +  +A  G       +   G N+S  R   +   + +RT+ERG GLT +CGS   AS
Sbjct: 174 YDENELVAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233

Query: 233 VVASGCLH--KTNRAVSVKMLGG--GLLIEWHDNNHVF--MTGEAKKEWEGKLDIK 282
                 L     +  + V+  GG     +    +  +   + G A   +   +D++
Sbjct: 234 RAVYSRLGHAPADEPLLVRNPGGCARSFLTPAADGALTPRLEGNATFVYRAVVDLE 289


>gi|154509066|ref|ZP_02044708.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798700|gb|EDN81120.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC
           17982]
          Length = 307

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 104/307 (33%), Gaps = 55/307 (17%)

Query: 9   AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
            K  G GN  +V  D    +D    +     S       D    I   +   +  F+   
Sbjct: 13  VKAHGAGNSFVVATDQYDDYDPSEVEVATLCSPAFGIGADG--FIRAVERDGL-WFMDYR 69

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK-----ENRDGSIS 117
           N DGS+ + CGNG+R  V  L           ++    T  GI         E +  S  
Sbjct: 70  NADGSKAEMCGNGVRVFVDHLRREGLVDLPVGQTLDVATRGGIKRVTPESEDEGQGASYR 129

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174
           VDMG         P A       R+   +       +     V M NPH +  + D+   
Sbjct: 130 VDMG---------PAASPA----RETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETL 176

Query: 175 ----LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTA 223
               L   D++           P    G NL +             + +R  ERGVG T 
Sbjct: 177 RGVFLPTVDVSQIQQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQ 236

Query: 224 ACGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHD------NNHVFMTG 269
           ACG+  CA+ +A+             V + GG +      +I+W        +  VF+TG
Sbjct: 237 ACGTGCCAAAIATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPQITDASVFLTG 296

Query: 270 EAKKEWE 276
            A +  E
Sbjct: 297 HATRVAE 303


>gi|157163987|ref|YP_001465937.1| diaminopimelate epimerase [Campylobacter concisus 13826]
 gi|112801819|gb|EAT99163.1| diaminopimelate epimerase [Campylobacter concisus 13826]
          Length = 247

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 101/279 (36%), Gaps = 35/279 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  +K    GN  ++       D  +  A    S  +    D ++++  ++         
Sbjct: 1   MQVSKYNASGNDFVIFHTFLSKDR-SELARQICSRTNGVGADGLIVLLPYEKG---VKWE 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
             N DGS    CGNG R   R+      +    F   T  G ++A   +D  + V +  P
Sbjct: 57  FYNSDGSYAAMCGNGSRAAARYAYLNGLVSSSEFALLTGSGEVMASV-KDECVEVVLTSP 115

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                         K+  +  + G     F         G PH + F ++ L  +D+   
Sbjct: 116 --------------KILSEPLNEGGKTWYFY------DTGVPHLVNFTQN-LDEFDVKEC 154

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +L +        N+++A+      L +RT+ERGV   T ACG+   A    +      
Sbjct: 155 -RVLRQ----KYNANVNLAKF-DGGVLKVRTYERGVEDETLACGTGMAACFYGATLNLNA 208

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + + V    G  L    +N  +  +G  K  ++  ++I
Sbjct: 209 AQCLKVYPKSGEELGLRLENGKILFSGAVKHCFDTSIEI 247


>gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
 gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1]
 gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
          Length = 260

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 47/277 (16%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ ++     C D      I +L  +     D  +L+     A  DA + I N D
Sbjct: 15  YSGAGNRFIL--SETCPDITI---IPSLCKEYQV--DGFLLVLPSSTA--DAKLIIFNDD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RCVV  L+  +K+   + ET  G    + +    + VDM  P  ++   
Sbjct: 66  GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L+ +   + R+ F I                G PH + FVE D+    +  +G+ L  H
Sbjct: 126 TLSHTLPGVPREVFSI--------------HTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237
             F  +G N++  +        LRT+ERG+                          V + 
Sbjct: 171 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAAL----------VVAQ 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               +N  + +   G  L+    + + V++ G   KE
Sbjct: 221 RYGLSNTQIPIWTWGDILIKISLEGDRVYLEGPVDKE 257


>gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
 gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
          Length = 162

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 5/151 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF  L     ++     T  G +  +   +  + V+MGEP  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
           +  P      K  +D ++ G   H  +   F
Sbjct: 121 QKNPF--PCTKGRKDLYYQGNGTHCIMWCSF 149


>gi|256786059|ref|ZP_05524490.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289769955|ref|ZP_06529333.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289700154|gb|EFD67583.1| diaminopimelate epimerase [Streptomyces lividans TK24]
          Length = 266

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 106/283 (37%), Gaps = 27/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K+ G GN  +++   G    ++ + +A    +       D +++     D+     
Sbjct: 1   MRFRKIHGAGNDFILLSNLGLDYDNDWSKEAERLCARRTGVGADGLVISRLINDSPAVLE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N D S    CGN +RC           +  +   + G++      D S+ V     
Sbjct: 61  VACFNADSSVATMCGNALRCSAWAAHRDHGFQQMSLR-MAGVVHEAVVSDESVWV----- 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                      + +        +  V +           G  H +  V DD+   D    
Sbjct: 115 -----------TAEVGAVLPRRLQAVINGRPTWFDSAHTGTEHVVAIV-DDVDAIDAVMV 162

Query: 184 GNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
           G L+  H  +   G N++  + T  ++L LRT+ERGV   T +CGS A A+VV +     
Sbjct: 163 GRLVRHHIDLAPLGTNVNFVQSTGQQALKLRTYERGVEAETLSCGSGAVAAVVVATMRGL 222

Query: 242 TNRA-VSVKMLGGG-LLIEWHD---NNHVFMTGEAKKEWEGKL 279
             R  V+V    G  L +  HD   N   ++ G     +EG L
Sbjct: 223 VARRAVTVHNRAGEPLTVRPHDARPNRTHWVGGPVTHTFEGVL 265


>gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
          Length = 253

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 107/277 (38%), Gaps = 47/277 (16%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ ++     C D      I +L  +     D  +L+     A  DA + I N D
Sbjct: 8   YSGAGNRFIL--SETCPDITI---IPSLCKEYQV--DGFLLVLPSSTA--DAKLIIFNDD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RCVV  L+  +K+   + ET  G    + +    + VDM  P  ++   
Sbjct: 59  GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L+ +   + R+ F I                G PH + FVE D+    +  +G+ L  H
Sbjct: 119 TLSHTLPGVPREVFSI--------------HTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 163

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237
             F  +G N++  +        LRT+ERG+                          V + 
Sbjct: 164 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAAL----------VVAQ 213

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               +N  + +   G  L+    + + V++ G   KE
Sbjct: 214 RYGLSNTQIPIWTWGDILIKISLEGDRVYLEGPVDKE 250


>gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 294

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 114/312 (36%), Gaps = 45/312 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T   + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  A  D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    +SVDMG+            +F+     R   G            V +GN
Sbjct: 121 TVHAADATGADVSVDMGKANTLGG---GGEAFEATVGGRRFAG----------LAVDVGN 167

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          D+L   D+A+   +      F +GVN+ +    +   + +R  ERGVG
Sbjct: 168 PHLACLDPELSVDELAALDVAA--PVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVG 225

Query: 221 LTAAC-GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +C      A V A          ++V++ GG +++   D    ++ G +     G++
Sbjct: 226 ETRSCGTGTVAAVVAALAAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI 284

Query: 280 DIKTGKWIKKNE 291
              + +W ++ +
Sbjct: 285 ---SEEWWQQAQ 293


>gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 316

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 102/314 (32%), Gaps = 48/314 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLI-----------HD 54
           +  K     N  L++    C   ++   I A+         D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPSCEVAVSGADIAAVCDRHGGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                 + F+   N DGS  + CGN  R     L S         +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTVT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              D   +VDMG   L          +D         GP      R    V M NPH + 
Sbjct: 131 RLGD-LWTVDMGPARLTRPEEADDEGWDTTVMVPGLAGP------RAALSVEMPNPHTVV 183

Query: 170 FV--EDDLYHY---DLASFGNLLAKHPMFSEGVNLSIA----RVTSLES------LDLRT 214
            +  ED+L       L      +   P+   G NL +          ++        +R 
Sbjct: 184 ALGEEDELEAAVFAGLTDSAAPVVYDPLPEVGTNLELVVPLGEEVDPDTQAPVGIARMRV 243

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267
            ERGVG T +CG+  CA+ VA              + + GG + +        +++ V +
Sbjct: 244 LERGVGETLSCGTGCCAAAVALHTWTGPGAPEDYRLLVPGGEIGVHVGANPLAEDSTVLL 303

Query: 268 TGEAKKEWEGKLDI 281
           TG A     G++ I
Sbjct: 304 TGPAAV--TGRVTI 315


>gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950]
          Length = 288

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 114/309 (36%), Gaps = 45/309 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------LI 52
           + FAK  G  N  +V+       ++T   + AL         D ++            ++
Sbjct: 1   MKFAKGHGTQNDFVVLPDPAAELSLTGSRVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60

Query: 53  HDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
               D     D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPDGVAADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLEDRDDFVVGSLAGPRPV 120

Query: 109 KENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +R       ISVDMG+              D +   R   G            + +GN
Sbjct: 121 SVHRVDGTTADISVDMGKAN-------TLGPGDAVLGGRRFSG----------VAIDVGN 163

Query: 165 PHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH      D        L     +      F +GVN+ I       ++ +R  ERGVG T
Sbjct: 164 PHLACVDPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGET 223

Query: 223 AACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+   A+ VA+      +   ++V++ GG +++   D    ++ G +     G++  
Sbjct: 224 RSCGTGTVAAAVAALAGTGADTGTLTVRVPGGEVVVTITDATS-YLRGPSVLVAHGEI-- 280

Query: 282 KTGKWIKKN 290
            + +W ++ 
Sbjct: 281 -SEEWWREQ 288


>gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
 gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
          Length = 280

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 53/297 (17%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +                        F
Sbjct: 2   VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGAKWF 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114
           +   N DGS  + CGNG R +  F        S   F   T  G+ +     +       
Sbjct: 61  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              V+MGE  +              + D + +             V MGNPH +  +ED 
Sbjct: 121 VFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 167

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWERGVGLTAAC 225
                +    +L+ K    P+     N+   RV  ++         +R  ERG G T +C
Sbjct: 168 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETLSC 227

Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           G+  CA+ +      KT      + + GG L ++  D++ V +TG A    +  +D+
Sbjct: 228 GTGLCATGIV--LQAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 279


>gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
 gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
          Length = 289

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 44/299 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53
           + FAK  G  N  +++       ++T+ A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  A  D F+   N DGS  + CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +        ++V+MG      K +        +   RF           +   V +GN
Sbjct: 121 VLHEADDTTADVTVEMG------KAVRCGTGTATVGGRRF-----------SGLAVDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           PH    V+++L    LAS      +      F  GVN+ I       ++ +R  ERGVG 
Sbjct: 164 PHLAC-VDEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGE 222

Query: 222 TAACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+   A+ VA+          + V++ GG + +   + +  ++ G +     G+L
Sbjct: 223 TRSCGTGTVAAAVAALDHQGARTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL 280


>gi|322378405|ref|ZP_08052859.1| diaminopimelate epimerase [Helicobacter suis HS1]
 gi|322380086|ref|ZP_08054342.1| diaminopimelate epimerase [Helicobacter suis HS5]
 gi|321147493|gb|EFX42137.1| diaminopimelate epimerase [Helicobacter suis HS5]
 gi|321149161|gb|EFX43607.1| diaminopimelate epimerase [Helicobacter suis HS1]
          Length = 254

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 33/275 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K    GN  L+       D  ++ A            D ++++       +     
Sbjct: 1   MHLYKYCASGNDFLITSQFKSGD-YSALAKQLCHRHYGFGADGLVVLLPHH--ELAYTWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS----ISVDM 120
             N DGSE + CGN  RC   +   +        F +  GI+  +    G     +  ++
Sbjct: 58  FYNADGSEAEMCGNASRCAGFYAYKQGLAPCQHAFLSKAGIIRVEVQSLGQTSALVESNL 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P                           +L  +  +++  G PH ++FV   L     
Sbjct: 118 GVPKW---------------------LQTLNLEGKTWYLLDTGVPHLVYFVPS-LKQIPS 155

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                +      F    N++IA +    ++ L T+ERGV  +T ACG+   A  +A+   
Sbjct: 156 TKIALMQTLRERF--NANVNIACIIDDHTIQLATYERGVEDITLACGTGMAAVFMAAYQE 213

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           H      ++       L     +N V+  G  +  
Sbjct: 214 HHLMPQATLIPPSQEKLSLCLKDNEVYFKGMVEYV 248


>gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
          Length = 280

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 53/297 (17%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +                        F
Sbjct: 2   VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGTKWF 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114
           +   N DGS  + CGNG R +  F        S   F   T  G+ +     +       
Sbjct: 61  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              V+MGE  +              + D + +             V MGNPH +  +ED 
Sbjct: 121 VFQVEMGEWKIG-------------ETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 167

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARVTSLE------SLDLRTWERGVGLTAAC 225
                +    +L+ K    P+     N+   RV  ++         +R  ERG G T +C
Sbjct: 168 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETLSC 227

Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           G+  CA+ +      KT      + + GG L ++  D++ V +TG A    +  +D+
Sbjct: 228 GTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 279


>gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
 gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
          Length = 341

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 98/320 (30%), Gaps = 53/320 (16%)

Query: 10  KMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQD----------- 57
           K     N  L++    C   +++ D             D  + +                
Sbjct: 26  KGHATENDFLLLVDPDCQVALSAGDVAEVCDRHAGVGADGFVRVVRTCALPGVHRFHEAV 85

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENR 112
              + F+   N DGS  Q CGN +R +   L            S T  T  G        
Sbjct: 86  PEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGGARTLTRAG 145

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
               +VDMG   L      L    D+       +  +     R    ++M NPH +  + 
Sbjct: 146 Q-LWTVDMGPARLIRPEHALGEVDDEGWDTAVTVPGLEGP--RAALSIAMPNPHTVVALS 202

Query: 173 DDLYHYDLASFG----NLLAKHPMFSEGVNLSIARVTSL--------------------E 208
           ++         G    +     P+  +G NL +                           
Sbjct: 203 EEAELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAESTGQDAEASVRVG 262

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE-----WHD 261
              +R  ERGVG T +CG+  CA  VA       +      + +LGG + +      W  
Sbjct: 263 RARMRVLERGVGETRSCGTGCCAVAVALHEWEGEDAPTDYLIDVLGGQVGVHVGADPWAP 322

Query: 262 NNHVFMTGEAKKEWEGKLDI 281
           +  V +TG A     G+L +
Sbjct: 323 DATVLLTGPATI--TGRLTL 340


>gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
 gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
          Length = 260

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 47/277 (16%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++     C +  T   I+AL  ++    D  +L+     A  DA + I N D
Sbjct: 15  YSGAGNCFIL--SETCPEITT---ISALCKEEQV--DGFLLVLPSSVA--DAKLIIFNDD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS  + CGNG+RCV+  L+S +K++  + ET  GI   K      + VDM  P   ++  
Sbjct: 66  GSRPKMCGNGLRCVIAHLSSVLKKEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L  +  ++ ++ F I              + G PH + FV DD+    +  +G+ L  H
Sbjct: 126 NLTYTIAQLPQEIFSI--------------NTGVPHLVVFV-DDVSCIPIDLWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237
             F  EG N++     S     +RT+ERG+                          V + 
Sbjct: 171 ADFSPEGANVNFIEAMSSREFRIRTYERGLERESLACGTGATAAAL----------VVAK 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               +N  + ++     ++    D + V++ G   KE
Sbjct: 221 RYGLSNIQIPIRTWSNIVINISLDRDRVYLEGPVNKE 257


>gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN]
 gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
 gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae]
 gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae]
 gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
          Length = 296

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 42/300 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM------------LI 52
           + FAK  G  N  +V+         T+  + AL         D ++            ++
Sbjct: 1   MIFAKGHGTQNDFVVLPDVEADVTFTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGVL 60

Query: 53  HDFQDASV--DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVA 108
               D     D ++   N DGS  Q CGNG+R    +L +        F   ++ G  + 
Sbjct: 61  EHLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRLV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +        ++VDMG+  L     P                        +   V +GN
Sbjct: 121 NVHHVDELNADVTVDMGKANLLGSGGPA-------------FAVTVGGRRFSGVAVDVGN 167

Query: 165 PHAIFFVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH          ++L   DL +   +      F +GVN+ +        + +R  ERGVG
Sbjct: 168 PHLACMDPQLSLEELAALDLGA--PVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVG 225

Query: 221 LTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+   A+ VA+      +   ++V++ GG ++I   D    ++ G +     G+L
Sbjct: 226 ETRSCGTGTVAAAVAALASAGADTGTLTVRVPGGDVVITITDVTS-YLRGPSVLVAHGEL 284


>gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S]
 gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S]
          Length = 289

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 48/302 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           ++F+K  G  N  +++        + +  + AL         D ++ +            
Sbjct: 1   MEFSKGHGTENDFVILPDPDVDLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                   + D F+   N DGS  + CGNG+R    +L       R  F   +  G    
Sbjct: 61  PELPEGVGADDWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120

Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +      G ++VDMG                   R+           +     + +GN
Sbjct: 121 HVHSADHVHGDVTVDMGR-----------------VRELGTSTATVGGRVLEGIGIDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219
           PH    V+ DL    LAS    L   P      F EGVN+ I       ++ +R  ERGV
Sbjct: 164 PHLAC-VDPDLTPASLASL--DLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+ VA+   H   +  V V++ GG + +   D     + G +     G+
Sbjct: 221 GETRSCGTGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGR 279

Query: 279 LD 280
           +D
Sbjct: 280 ID 281


>gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
 gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
          Length = 289

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 44/299 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53
           + FAK  G  N  +++       ++T+ A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                  A  D F+   N DGS  + CGNG+R    +L       R  F   ++ G    
Sbjct: 61  DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGGLEHRSEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +        ++V+MG      K +        +    F           +   V +GN
Sbjct: 121 VLHEADDTTADVTVEMG------KAVRCGTGTATVGGRTF-----------SGLAVDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           PH    V+++L    LAS      +      F  GVN+ I       ++ +R  ERGVG 
Sbjct: 164 PHLAC-VDEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGE 222

Query: 222 TAACGSAACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+   A+ VA+          + V++ GG + +   + +  ++ G +     G+L
Sbjct: 223 TRSCGTGTVAAAVAALDHEGAHTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL 280


>gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 279

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 104/297 (35%), Gaps = 53/297 (17%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +   +                    F
Sbjct: 1   MYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVSAVLAGGAKWF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD------G 114
           +   N DGS  + CGNG R +  F        S   F   T  G+ +     +       
Sbjct: 60  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRSNTKPYGAN 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              ++MGE             +   + D + +             V MGNPH +  +ED 
Sbjct: 120 VFQIEMGE-------------WKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDA 166

Query: 175 LYHYDLASFGNLLAK---HPMFSEGVNLSIARV------TSLESLDLRTWERGVGLTAAC 225
                +    +L+ K    P+     N+   R+      T +    +R  ERG G T +C
Sbjct: 167 FASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGETLSC 226

Query: 226 GSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           G+  CA+ +      KT      + + GG L ++  D++ V +TG A    +  +D+
Sbjct: 227 GTGLCATGIV--LRAKTGISHWDITVRGGTLRVDVTDSD-VKLTGAATLVAD--IDL 278


>gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
 gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
          Length = 272

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 47/272 (17%)

Query: 13  GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
           G GN+ ++              I  L  +     D  + +     A  DA + I N DGS
Sbjct: 26  GAGNRFIL-----SEACPDITMIPNLCREHQV--DGFLHVLPSSIA--DAKLIIFNDDGS 76

Query: 73  EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
               CGNG+RCV+ +L+S ++++  + ET  G+   K      + VDM  P   ++   L
Sbjct: 77  RPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKFYSWDRVVVDMTLPNWKYRSHQL 136

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
             +   + ++ F I                G PH I FVE DL    +  +G+ L  H  
Sbjct: 137 THTLSDLPKEVFSI--------------DTGVPHVIVFVE-DLSSVPVNLWGSFLRYHED 181

Query: 193 F-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASGCL 239
           F  +G N++  +      + +RT+ERG+                          V +   
Sbjct: 182 FAPQGTNVNFVQAQDFREIHMRTYERGLERESLACGTGATAAAL----------VLAKRY 231

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
             +N  + +      L+    D++ V++ G  
Sbjct: 232 GLSNTKIHIWTWNRILIKISLDSDRVYLEGPV 263


>gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478]
          Length = 290

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/310 (19%), Positives = 110/310 (35%), Gaps = 45/310 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +++       ++ +  I AL         D ++ +            
Sbjct: 1   MMFAKGHGTENDFVLLPDIKAQLSLGTAQIAALCDRRRGLGADGVLRVTTAEAAAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                   + D ++   N DGS  Q CGNG+R    +L      +R  F   ++ G    
Sbjct: 61  DRLPDGVGAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRPV 120

Query: 109 KENRDGS----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +   +    ++VDMG+              +++      +G      L     V +GN
Sbjct: 121 TVHSVDASNADVTVDMGKA-------------NRIGTGTAVVGGRRFPGL----AVDVGN 163

Query: 165 PHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH               L     +      F +GVN+ +        + +R  ERGVG T
Sbjct: 164 PHLACLDPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGET 223

Query: 223 AAC-GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +C      A+V A          ++V++ GG + +   D    F+ G +     G++  
Sbjct: 224 RSCGTGTVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATS-FLRGPSVLVATGEV-- 280

Query: 282 KTGKWIKKNE 291
            +G+W +  +
Sbjct: 281 -SGEWWRAQQ 289


>gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
 gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
          Length = 289

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 48/302 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           ++F+K  G  N  +++        + +  + AL         D ++ +            
Sbjct: 1   MEFSKGHGTENDFVILPDPDADLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                   + D F+   N DGS  + CGNG+R    +L       R  F   +  G    
Sbjct: 61  PELPEGVGADDWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120

Query: 109 KENR----DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +      G ++VDMG                   R+           +     + +GN
Sbjct: 121 HVHSADHVHGDVTVDMGR-----------------VRELGTSTATVGGRVLEGIGIDVGN 163

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP-----MFSEGVNLSIARVTSLESLDLRTWERGV 219
           PH    V+ DL    LAS    L   P      F EGVN+ I       ++ +R  ERGV
Sbjct: 164 PHLAC-VDPDLTPASLASL--DLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGV 220

Query: 220 GLTAACGSAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G T +CG+   A+ VA+   H   +  V V++ GG + +   D     + G +     G+
Sbjct: 221 GETRSCGTGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGR 279

Query: 279 LD 280
           +D
Sbjct: 280 ID 281


>gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
 gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
          Length = 236

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 45/269 (16%)

Query: 11  MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
               GN  L++D       +    D +      +N    D ++ +          F+   
Sbjct: 3   YSANGNTFLIVDNTQKRIPEEKKPDFVR-----ENVGDLDGVIFVELVD---GKYFMDYY 54

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGS    CGNG R   ++L  R  +K K FTF +  G +  K   D SI V M     
Sbjct: 55  NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEI--KVIVDDSIWVRM----- 107

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                P      +M  D +             + V +G PH +  V+  +   D+   G 
Sbjct: 108 -----PGVSEKKEMKVDDYE-----------GYFVVVGVPHFVMEVKG-IDELDVEKLGR 150

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
            L     +  G N+    V   + L +RT+ERGV   T ACG+    SV A        +
Sbjct: 151 DLR----YKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVT-SVFAVYRDKTGAK 204

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            V +++ GG L ++  +N  +F+ G+ K+
Sbjct: 205 EVKIQVPGGTLFLK-EENGEIFLRGDVKR 232


>gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8]
 gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8]
          Length = 236

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 45/269 (16%)

Query: 11  MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
               GN  L++D       +    D +      +N    D ++ +          F+   
Sbjct: 3   YSANGNTFLIVDNTQKRIPEEKKPDFVR-----ENVGDLDGVIFVELVD---GKYFMDYY 54

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           N DGS    CGNG R   ++L  R  +K K FTF +  G +  K   D SI V M     
Sbjct: 55  NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEI--KVIVDDSIWVRM----- 107

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                P      +M  D +             + V +G PH +  V+  +   D+   G 
Sbjct: 108 -----PGVSEKKEMKVDGYE-----------GYFVVVGVPHFVMEVKG-IDELDVEKLGR 150

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
            L     +  G N+    V   + L +RT+ERGV   T ACG+   +  V         +
Sbjct: 151 DLR----YKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVTSVFVV-YRDKTGAK 204

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            V +++ GG L ++  +N  +F+ G+ K+
Sbjct: 205 EVKIQVPGGTLFLK-EENGEIFLRGDVKR 232


>gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 382

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 105/314 (33%), Gaps = 72/314 (22%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIH-------- 53
           + F K    GN  +++D         D+++  A  A +       D +++I         
Sbjct: 4   IPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQ 63

Query: 54  -----------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102
                        Q+   +   R+    G E   CGNG+ C+  +L  +    S +  T 
Sbjct: 64  SINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTE 123

Query: 103 RGILVAKE-------NRDGSISVDMGEPIL--------------DWKLIPLARSFDKMDR 141
             +   K        NR GS  V++G P L              D  +  +     K   
Sbjct: 124 IPLATPKVIKIGTDQNRVGSW-VNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRA 182

Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---------------------- 179
           D       ++       +V  G PH + F + D    +                      
Sbjct: 183 DDLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSW 242

Query: 180 -LASFGNLLAKHPM--FSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
            +   GN +  H    F  G+N++ AR  +   ++ R +ERG+   T ACG+ A A    
Sbjct: 243 LVEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYI 302

Query: 236 SGCLHKTN-RAVSV 248
              +HK N   V V
Sbjct: 303 YSQMHKLNISEVDV 316


>gi|109947347|ref|YP_664575.1| diaminopimelate epimerase [Helicobacter acinonychis str. Sheeba]
 gi|109714568|emb|CAJ99576.1| dapF [Helicobacter acinonychis str. Sheeba]
          Length = 264

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 17/272 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKRDFSNLARQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGN  RCV  F     +  K+  F   +  +         I  ++G   
Sbjct: 58  FYNSDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGD 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +  ++I  +        D           +   +++  G PH + FV+       L    
Sbjct: 118 I-LEIISTSGGKKSFSNDSVLA------SIPTFYLIDTGVPHLVGFVKKKESLNSLNILE 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +H   +   N++IA + + +++ L+T+ERGV   T ACG+   A+  A+   + T 
Sbjct: 171 LRALRH---ASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTP 227

Query: 244 RAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           R  ++       L +    +N +F  G  +  
Sbjct: 228 RNATLIPKSNEHLELSLR-DNEIFYKGAVRYI 258


>gi|154248770|ref|YP_001409595.1| diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1]
 gi|154152706|gb|ABS59938.1| Diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1]
          Length = 245

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 103/277 (37%), Gaps = 40/277 (14%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             +   K    GN  ++ID      + +  +   L + +N   D  + +    +      
Sbjct: 3   KKLKIYKYNANGNTFILIDCLDNTLDDSEKSEIVLKSVENR--DGAIFVERNNNL---FH 57

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG R  V +L           F T  G+L A  + D  +SV M  
Sbjct: 58  MDYFNRDGKRAAFCGNGARTFVNYLKEYYGLSGEVLFSTTSGMLKALVDED--VSVQMPN 115

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P              ++  + F              ++  G PH +  VE+ +   D+ +
Sbjct: 116 PKY----------VKQISYESFQ-----------GALIETGVPHIVIRVEN-VDFIDIEN 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV----VASG 237
               + +  +F    N++   V   + L +RT+ERGV   T +CGS   ++         
Sbjct: 154 VAPEIRR--IF--DANVNFYDVVQEKFLRVRTFERGVERETKSCGSGITSTSFYYKYYIL 209

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
              K    + V  LGG L + + +N  V++ G  + E
Sbjct: 210 KDGKQPDEIKVLSLGGVLHVLFKEN-EVYLEGRVEHE 245


>gi|224418877|ref|ZP_03656883.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|253827831|ref|ZP_04870716.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|313142394|ref|ZP_07804587.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|253511237|gb|EES89896.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|313131425|gb|EFR49042.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
          Length = 248

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 95/274 (34%), Gaps = 33/274 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+K    GN  +++      +N  S+    +    +    D ++++        D   
Sbjct: 1   MFFSKYSASGNDFILMHTFRYKENSYSELAKKICHRQEGIGADGLIILKPHL--EYDFEW 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS  + CGNG R    +        +   F +  G++                 
Sbjct: 59  EFYNADGSVAEMCGNGSRAAAMYARDLGLAGERQKFLSKAGVIGVSIEG----------- 107

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +W    L+++ D + ++    G    L       ++ G PH +        + +LA  
Sbjct: 108 --NWAESALSKA-DILQKEISEFGVKWWL-------LNTGVPHLVC------ENANLAFL 151

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                +        N++IA +     +  RT+ERGV   T ACG+   A       L K 
Sbjct: 152 NKEDLRFLRHKYNANINIASLQD-NRVLARTFERGVEDETLACGTGMAAMFYYLFLLGKV 210

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +         G  L    D   +++ GE +K  +
Sbjct: 211 SNPCLFNPASGEDLYLREDKGTLYLKGEVRKICD 244


>gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
 gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
          Length = 307

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 104/321 (32%), Gaps = 67/321 (20%)

Query: 4   SMVDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ------ 56
           + V F+K  G GN  ++I D  G HD   +  + A         D  +     +      
Sbjct: 10  TGVSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGT 69

Query: 57  -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGIL 106
                +   + F+   N DGS  + CGNG+R  V+FL           +     T  G+ 
Sbjct: 70  AVLDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVK 129

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           + +    G  SVDMG+           R  D +      +        R    ++ GN H
Sbjct: 130 LVRRTAAG-FSVDMGQWKFTMPQTAEDRGVDSL------VTANGLDVARPALSINTGNAH 182

Query: 167 AIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218
            +  +    +L   DL     ++   P+   G N+  A             + +R +ERG
Sbjct: 183 TLVALAHRAELDELDLHR-APIV--DPVPEHGSNVEFALPHDPLVVGGIAEISMRVFERG 239

Query: 219 VGLTAA---------------CGSAACASVVASGCLHKTNRAVSVKMLGGGL----LIEW 259
           VG T +                G  A A                + + GG +     +  
Sbjct: 240 VGETLSCGTGACAAAAATRFWAGEGAPA-------------EWKINVPGGSVVAKFFVAE 286

Query: 260 HDNNHVFMTGEAKKEWEGKLD 280
               HV ++G A     G   
Sbjct: 287 DQTEHVELSGPAVIVARGVFS 307


>gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
 gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
          Length = 297

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 105/300 (35%), Gaps = 40/300 (13%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----------- 57
           K  G GN  +V   R    ++  + + A+         D ++     +D           
Sbjct: 7   KAHGTGNDFVVFTDRDGSLDVPPETVAAVCDRHLGLGGDGLIRAVRSRDLEEGRRLLERH 66

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENR 112
              + F+   N DGS  Q CGNG+R  V  L         +       T  G+       
Sbjct: 67  PDAEWFMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTS 126

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G  +VDMG        +   R  D        +        R    + MGNPH +  + 
Sbjct: 127 GG-YAVDMGPWSFTRGELARERGSD------CVVTAAGLTVPRPGVSIGMGNPHTVVVLS 179

Query: 173 D--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAAC 225
           +   L   DL +   +    P+  +G N+            L  L++R  ERGVG T +C
Sbjct: 180 EGEKLDTLDLHTAPAV---DPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGETHSC 236

Query: 226 GSAACASVVASGCLHKTNRAVS--VKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279
           G+ ACA+  A+             V++ GG L + +        HV + G  +     +L
Sbjct: 237 GTGACAAAAATRFWGGPQSPDRWFVQVPGGVLSVTFVPAPDGTEHVVLAGPVRVVATAEL 296


>gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3]
 gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3]
          Length = 260

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 103/277 (37%), Gaps = 47/277 (16%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ ++            D     S       D  +L+     A  DA + I N +
Sbjct: 15  YSGAGNRFIL-------SETCPDMTILPSLCKEYQVDGFLLVLPSSVA--DAKLIIFNDN 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RCV+  ++   K+     ET  GI   +      + VDM  P   +   
Sbjct: 66  GSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDMTLPDWHYTRH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L+ +   + ++ F I              + G PH + FVE D+    +  +G+ L  H
Sbjct: 126 LLSHTLPGVPKEVFSI--------------NTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVGLT------------AACGSAACASVVASG 237
             F  +G N++  +  S     +RT+ERG+                          V + 
Sbjct: 171 EDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAAL----------VVAR 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               +N  + ++     L+    D++ V++ G   KE
Sbjct: 221 RYGLSNTQIRIRTWSDVLMKISLDSDRVYLEGHVDKE 257


>gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
 gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
          Length = 265

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 87/271 (32%), Gaps = 33/271 (12%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  L+       D  ++ A            D ++++      +        N 
Sbjct: 5   KYCASGNDFLITHQFTPQDR-SALAKRICDRHYGFGADGLVVLLPHSKHA--YTWEFYNA 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENR----DGSISVDMGEPI 124
           DGS    CGN  RCV  +   +       TF +  G++  +        G +  ++G P 
Sbjct: 62  DGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGAP- 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                             R     +         ++  G PH + FV D           
Sbjct: 121 -----------------KRLESLQLEGQI---WHLLDTGVPHLVHFV-DHPNKIPTHKTP 159

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +      F    N++ A +    ++ L T+ERGV  +T ACG+   A    +   H  N
Sbjct: 160 QMQTLRARF--DANVNFAYIQDPRTIKLATYERGVEDITLACGTGMAAVFACAYYQHNHN 217

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               +    G  L  +  ++ ++  G+    
Sbjct: 218 PQAVLIPPSGEALNWYLRDDELYFQGQVHFI 248


>gi|34558429|ref|NP_908244.1| diaminopimelate epimerase [Wolinella succinogenes DSM 1740]
 gi|34484148|emb|CAE11144.1| PUTATIVE DIAMINOPIMELATE EPIMERASE [Wolinella succinogenes]
          Length = 255

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 43/274 (15%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  ++       D  ++ A            D ++++     +         N 
Sbjct: 5   KYCASGNDFILFHALKKSDR-SALAQILCDRHRGIGADGLIVLLPH--SLFHFEWEFYNS 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DGS    CGNG R    +   +    K   F T  G + A    D  + +++ E  +  K
Sbjct: 62  DGSGADMCGNGARAAALYAYHQGLAPKEQRFLTGAGPISATV-EDKEVEIELTEASILQK 120

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYDLASFGNL 186
            I  A                        +++  G PH + F     DL   +L+     
Sbjct: 121 EIERAG--------------------HTWWLIDTGVPHLVSFAAQGIDLDSAELSKL--- 157

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
                 +    N+++A+  + + + LRT+ERGV   T ACG+   A+   +        +
Sbjct: 158 -----RWEFNANVNLAK-LTPDGIALRTFERGVEAETLACGTGMAATFWRAKEEGWVKES 211

Query: 246 VSVKMLGGG---LLIEWHDNNHVFMTGEAKKEWE 276
            ++         L I   D + +F  G+  K  +
Sbjct: 212 ATLIPASQERLSLRI---DKSKIFFKGKVNKVCD 242


>gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
 gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
          Length = 237

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 101/266 (37%), Gaps = 39/266 (14%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN  L++D       I+ +       +     D ++ +          F+   N D
Sbjct: 4   YSANGNTFLMVDNTEK--KISENEKPDFVRNHVGDLDGVIFVE---KVGEKFFMDYYNRD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           GS    CGNG R   ++L  R  +K++ FTF +  G +      D  I V M        
Sbjct: 59  GSMATFCGNGARAFSQYLIDRGWVKQRKFTFLSRAGEIKVFL--DDGIWVRM-------- 108

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
             P      +++ D +               V +G PH I  V++ +   D+   G LL 
Sbjct: 109 --PAVSEVKELEVDGY-----------RGHFVVVGVPHFILEVKN-VDEVDVEKLGRLLR 154

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS 247
                    N+    V +   L +RT+ERGV   T ACG+   A          + + + 
Sbjct: 155 H----KTNANVDFYEV-AQGFLKVRTYERGVERETKACGTGVTAVFFVHHSRTGS-KEMK 208

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKK 273
           V + GG L +   +N  +++ G+ ++
Sbjct: 209 VLVPGGTLFLR-EENGEIYLKGDVRR 233


>gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 279

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 118/281 (41%), Gaps = 44/281 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDN-ITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            KM+G GN  L++D             I+ AL+T  +T  D I+ +   Q       ++I
Sbjct: 6   TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            + DG+E   CGNG+RC  R+     ++   F   T  G+     + D  + V++G    
Sbjct: 61  FDRDGTEETMCGNGLRCATRYFRDTYVRSNVFNIITGDGLKEVFVDND-CVEVNLGA--- 116

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                  AR + ++D+              N   V  G PH +  +  ++      + G 
Sbjct: 117 -------ARDYRQIDQ--------------NCHYVYTGVPHVVV-IGSEISLETARAQGQ 154

Query: 186 LLAKHPM------FSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            L             EGVN++    T+   + LRT+E GV  +T +CG+ + AS   +  
Sbjct: 155 SLRNDKSLCELVGHPEGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAK 214

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +   +  +    LGG L I  +D   + ++G  +  ++GK+
Sbjct: 215 VFGIDLPILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252


>gi|154148142|ref|YP_001406080.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
 gi|153804151|gb|ABS51158.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
          Length = 247

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 94/260 (36%), Gaps = 40/260 (15%)

Query: 34  AINALSTDDNTHFDQIM---------------LIHDFQDASVDAFIRIINCDGSEVQSCG 78
           A    +       D ++               LI D  +  +D      N DGS+   CG
Sbjct: 2   ARKICNHHKGIGADGLIVIIKNKSEISNKISSLILDLNNDKIDFAWDFYNSDGSKADMCG 61

Query: 79  NGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
           NG R    F    ++  K+  F T  GI+ A+        ++    I++ +L    +  +
Sbjct: 62  NGSRAAALFAYENKIANKNMKFLTGAGIINAEICE-----INKHLAIVESELTKPVKKAE 116

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
               + F                  G PH + FV+ DL  +++      +A++       
Sbjct: 117 NFSENGF-----------LWSFYDTGVPHLVTFVK-DLNDFNIE-----VARNLRKKYNA 159

Query: 198 NLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256
           N++ A     E L +RT+ERGV   T ACG+   A  +           V V    G +L
Sbjct: 160 NVNFASFKD-EILRVRTYERGVEDETLACGTGMAACFITGVINFNLQNVVKVMPKSGEIL 218

Query: 257 IEWHDNNHVFMTGEAKKEWE 276
               +++ VF  G     ++
Sbjct: 219 YLRKNDDKVFFKGAVSHSFD 238


>gi|242310400|ref|ZP_04809555.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489]
 gi|239522798|gb|EEQ62664.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489]
          Length = 253

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 33/279 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M+   + F+K    GN  +++   R   D+ ++ A       +    D ++++   +   
Sbjct: 1   MRFFEMFFSKYSASGNDFILMHTFRYNEDSYSNLAKQICHRQEGIGADGLIVLKPHR--E 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISV 118
            D      N DGS  + CGNG R    +         S  F +  G++  +   D     
Sbjct: 59  YDFEWEFYNADGSVAEMCGNGSRAAGMYARDLGLAGNSQKFLSKAGMIGVEIEGD----- 113

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                   W    L+++ + + +D    G       +N ++++ G PH +    +DL   
Sbjct: 114 --------WAESALSKA-EVLKQDICEFG-------KNWWLINTGVPHLVC---EDLEIM 154

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
            L        +H       N++IA     + +  RT+ERGV   T ACG+   A      
Sbjct: 155 GLNKEDLRFLRHKY---NANINIASCR-EDRVLARTFERGVEDETLACGTGMAAMFYYLL 210

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             +K              L    +N  +++ G+ +K  +
Sbjct: 211 LANKVKNPCLFNPASKEDLYLREENGKLYLKGKVRKICD 249


>gi|237753277|ref|ZP_04583757.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375544|gb|EEO25635.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430]
          Length = 249

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 31/274 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+K    GN  ++       +   ++    +    +    D ++++      + D   
Sbjct: 1   MFFSKYSASGNDFILTHTFKFKEGSWAELAKRICHRQEGVGADGLIVLKPHL--TYDFEW 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    +     +      F T  G++ A+   +    +     
Sbjct: 59  EFYNADGSVANMCGNGSRAAALYAKDLNLAPNRQEFLTGAGVINAEIFAELESKI----- 113

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                L+  A +  K+ ++      VN       +++  G PH +    + L   DL + 
Sbjct: 114 -----LVESALTKAKVIQENIQEFGVN------WWLIDTGVPHLVCEGAN-LNKEDLRAL 161

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
                         N++IA     + +  RT+ERGV   T ACG+   A         K 
Sbjct: 162 --------RHKYNANINIAM-LEKDCVRARTFERGVEDETLACGTGMAAMFYYLKEKDKV 212

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +     K      L    +   +F+ G  +K  +
Sbjct: 213 SNPCCFKPASNEELFLREEEGRIFLKGNVRKICD 246


>gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
          Length = 272

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 32/283 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQ---IMLIHDFQDASVD 61
           + F K    GN  L+       +   +S A       +    D    ++L  D +D+   
Sbjct: 1   MQFVKYSSSGNDFLIFQSFERDNGGRSSLAKRVCERHNGIGADGMVVLLLGQDSKDSKKY 60

Query: 62  AF-IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGI--LVAKENRDGSIS 117
           A+     N DGS+ + CGN  R +  +     +  +  +F +  GI  ++  E+    + 
Sbjct: 61  AYEWEFYNADGSKAKMCGNASRSIGHYAFVEGIAPRKHSFLSQAGIIGIIIDESDANLVQ 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            D+G   L                   HI   N   ++   ++  G PH + FV D    
Sbjct: 121 SDLGAYKL----------------VEEHIVESNPYGVKAWALLDSGVPHLVGFVNDK--- 161

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVT---SLESLDLRTWERGV-GLTAACGSAACASV 233
             L    +   +        N+++A +        +   T+ERGV  +T ACG+ A A  
Sbjct: 162 KMLTYSKDEFLQTLREKYNANVNLAYIDESSDKSRILYMTYERGVEDITQACGTGAAAVF 221

Query: 234 VASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275
             +  L    +   +       L ++  +N H+   G+ ++  
Sbjct: 222 AMALRLGLCGKKALLIPPSNEILELQMTENQHILFKGKVQRIA 264


>gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 307

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/306 (23%), Positives = 104/306 (33%), Gaps = 55/306 (17%)

Query: 10  KMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G GN  +V  D    +D   ++     S       D    I   Q      F+   N
Sbjct: 14  KAHGAGNSFVVATDQFDQYDPSEAEVATLCSPAFGIGADG--FIRAVQRDGS-WFMDYRN 70

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAK-ENRDGSI----SV 118
            DGS+ + CGNG+R  V  L            +    T  GI        DG       V
Sbjct: 71  ADGSKAEMCGNGVRVFVDHLRREGLVDLPLGATLDVVTRGGIKRVTPLEEDGGHGAHYRV 130

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---- 174
           DMG           A +    +     I  V+ +       V M NPH +  + D+    
Sbjct: 131 DMG-----------AAASPASETIEVRIPGVDGVLGGLW--VDMPNPHTVVELADEETLR 177

Query: 175 ---LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAA 224
              L   D++           P  + G NL +         SL  + +R  ERGVG T A
Sbjct: 178 GVTLPTIDVSRLAPGQRPSYAPEPASGTNLELVVDLTTPGSSLGHIAMRVLERGVGETQA 237

Query: 225 CGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHDNNH------VFMTGE 270
           CG+  CA+ +A+             V + GG +      +I+W           V +TG 
Sbjct: 238 CGTGCCAAALATALRRGATAPTQWVVDVPGGRVSVGLDGVIDWSGGTPRVTNASVLLTGP 297

Query: 271 AKKEWE 276
           A +  +
Sbjct: 298 AMRVAD 303


>gi|293192304|ref|ZP_06609415.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309]
 gi|292820219|gb|EFF79213.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309]
          Length = 307

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 103/307 (33%), Gaps = 55/307 (17%)

Query: 9   AKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
            K  G GN  +V  D    +D    +     S       D    I   +   +  F+   
Sbjct: 13  VKAHGAGNSFVVATDQYDDYDPSEVEVATLCSPAFGIGADG--FIRAVERDGL-WFMDYR 69

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK-----ENRDGSIS 117
           N DGS+ + CGNG+R  V  L           ++    T  GI         E +  S  
Sbjct: 70  NADGSKAEMCGNGVRVFVDHLRREGLVDLPIGQTLDVATRGGIKRVTPESEDEGQGASYR 129

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174
           VDMG             S     R+   +       +     V M NPH +  + D+   
Sbjct: 130 VDMG-------------SAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETL 176

Query: 175 ----LYHYDLASFGNLLA--KHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTA 223
               L   D++           P    G NL +             + +R  ERGVG T 
Sbjct: 177 RGVFLPTVDVSQIPQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQ 236

Query: 224 ACGSAACASVVASGCLHKTNRAVS--VKMLGGGL------LIEWHD------NNHVFMTG 269
           ACG+  CA+ +A+             V + GG +      +I+W        +  VF+TG
Sbjct: 237 ACGTGCCAAALATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPRITDASVFLTG 296

Query: 270 EAKKEWE 276
            A +  E
Sbjct: 297 PATRVAE 303


>gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
 gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
          Length = 290

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 85/245 (34%), Gaps = 44/245 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           +DF K  G  N  +++   G   ++T   + AL         D ++ I            
Sbjct: 4   IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRG---- 104
                  A  D F+   N DGS  + CGNG+R     LT+   +    F   +  G    
Sbjct: 64  DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASSLVPGPEFVVGSRAGGRPV 123

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           ++   +     +SV MG   +         S   +D                   V +GN
Sbjct: 124 VVHHADPEAADVSVAMGPATV------FGSSSAGVDGRDLA-----------GIAVDVGN 166

Query: 165 PHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           PH    V      DL   D+AS       H +F  G N+ +       ++ +R  ERG G
Sbjct: 167 PHLACVVPGLTAADLGGLDVAS--PPSFDHGLFPHGTNVEVITPLVDGAVHMRVHERGSG 224

Query: 221 LTAAC 225
            T +C
Sbjct: 225 ETRSC 229


>gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175]
          Length = 248

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           CGNG+R V R+L  +        ET++ IL  K+    + S+    P    ++ P+  + 
Sbjct: 1   CGNGLRTVARYLLEKHALTDAKVETMKAILDVKK----ATSLGFDIPTYQVEISPVKFAA 56

Query: 137 DK----MDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AK 189
           +     +  ++     +  L     F  VS+ NPH I FV+  +   D      + L ++
Sbjct: 57  ETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSE 116

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVS 247
           +P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  +    L        ++
Sbjct: 117 NPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLN 176

Query: 248 VKMLGGGLLIEWHDN--NHV--FMTGEAKKEWEGKL 279
           V   GG + +    +    +   + G A    +G +
Sbjct: 177 VYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSV 212


>gi|239616517|ref|YP_002939839.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1]
 gi|239505348|gb|ACR78835.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1]
          Length = 237

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 42/264 (15%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN   V+D R      +      L    +   D ++ +        D F+   N D
Sbjct: 6   YSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADK--DGVIFVE-------DHFMDYFNRD 56

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G   + CGNG R  V F+         TFE+  G +      DG  +V M          
Sbjct: 57  GKRAEFCGNGARTYVAFIHEITGETKITFESYAGRIEGFV--DGLYNVKMPPVNYHGSR- 113

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                             +   FL       +G PH +   E D    +  +   +    
Sbjct: 114 --------------EFQGIKGEFLT------VGVPHFVI--EGDTEKLEWETLIPI---- 147

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249
             +    N+++ +      L +RT+ERGV G T ACG+ A A+        +    V+++
Sbjct: 148 -RWELNTNINVYKEIEPGKLRIRTFERGVEGETGACGTGATATAW-CYARGRKLLQVTLQ 205

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKK 273
             GG L++ + +  ++++ G  ++
Sbjct: 206 ANGGELVVSFKE-GNIYLGGGVER 228


>gi|32267200|ref|NP_861232.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449]
 gi|32263253|gb|AAP78298.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449]
          Length = 264

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 26/277 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K    GN  L+       D   T+ A +     +    D ++ +    +       
Sbjct: 1   MRFVKYSSNGNDFLIFTTHTYDDGSRTALAKSVCERHNGIGADGMVAVIPAINKDYAYEW 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGI--LVAKENRDGSISVDMG 121
              N DGS  + CGN  R V  +     + +K   F +  G+  +   +N    +  D+G
Sbjct: 61  EFYNADGSVAKMCGNASRSVGHYAYVEGIAQKRHFFLSKVGLIGITLDDNDISLVQSDLG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E  L  + I  +  +                 +++  ++  G PH + FV  +     L 
Sbjct: 121 ECALLQEDIIESNPY----------------GVKSWNLLDSGVPHLVGFVSQENA---LP 161

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +  + L +        N+S+  +    ++   T+ERGV  +T ACG+ A A    +  L 
Sbjct: 162 TQKDRLLEDLRHKYNANVSLGFI-GEGAISYSTYERGVEDITQACGTGAIAVFALALKLG 220

Query: 241 KTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWE 276
              ++  +      LL  + ++++H+   G+ K+   
Sbjct: 221 LCEKSAILIPPSKELLHLYMNEDSHILFKGKVKRIAT 257


>gi|291276326|ref|YP_003516098.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198]
 gi|290963520|emb|CBG39351.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198]
          Length = 253

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 33/276 (11%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G GN  L+  +  C      D    L         D  +++   Q  +        N
Sbjct: 5   KYSGSGNDFLITHL--CQHPSPKDLAKELCHRHLGIGADGFIILKPHQ--TYAYAWEFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            DGS    CGN  RCV  +     + +    F      +     ++ +++  +G+P    
Sbjct: 61  SDGSSALMCGNASRCVAHYANKHHLAKAQHIFWAGARAIEVHVKKN-TVATHLGKPS--- 116

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGN 185
                                +   +    + +  G PH + F +    L  Y      +
Sbjct: 117 ---------------TVETLSLISSYASYAYKIDTGVPHLVIFAKSQKSLPAYATQELKD 161

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           L  ++       N+++    + ++L + T+ERGV  +T ACG+   A+      LH  + 
Sbjct: 162 LREEY-----NANVNVVYAKNPKTLYVHTYERGVEDITLACGTGMAAASGVYHFLHPDHC 216

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +        LI   +  ++   G+ +      +D
Sbjct: 217 LFTCLPPSREELILKVEEQNIIFEGKVRHIATCYID 252


>gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5]
          Length = 124

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/123 (56%), Positives = 91/123 (73%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121

Query: 123 PIL 125
           P+ 
Sbjct: 122 PVF 124


>gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 123

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG 220
           MG  H++ FV +D   YD+   G  +  +  +F + VN++  +V   + +++ TWERG G
Sbjct: 1   MGTDHSVIFV-NDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAG 59

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
            T ACG+ A AS V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 60  RTLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117


>gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 253

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 35/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K E  GN  +V++    H           S       D +++     D++V   +R
Sbjct: 1   MQFWKFEAEGNSYIVVESSNLHAVDIP---AICSKRTGLSGDGLLVAEWLTDSTV--HMR 55

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           + N DG+E   CGNG RCV  F      +++ +    +     +  +   +  +  +   
Sbjct: 56  VFNADGTEAPMCGNGARCVAAFAYVNRPQLRDQDIVIKAQGATVTHRLAGEEGMKFN--- 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             + ++  PL                +N     + +   +G+PH +     DL   +L  
Sbjct: 113 ATIRFERDPL----------------INKYGEESRYQYVVGSPHLVILT--DLEAVNLTH 154

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +      F  G N+  A V     + +  WERGVG+   C + + A+   +  L   
Sbjct: 155 EGPIYE--ATFDGGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGS-AAAAMAVALEMP 211

Query: 243 NRAV--SVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEG 277
           +  +   V    G + +EW+  + V  M G      EG
Sbjct: 212 DWPLESEVLTPQGCVRVEWNAMDKVLCMEGNVSLVAEG 249


>gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 238

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 43/273 (15%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN  LV+D R    +     +  L   D    D  + +          F+   NCD
Sbjct: 7   YTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGR--DGAIFVERD-------FMDYYNCD 57

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G+    CGNG R  V F+  + KR    F +  G ++ K   D  +SV M  P       
Sbjct: 58  GNRAAFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKV--DDLVSVRMPSPRF----- 110

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
               +F++ D               +  +V +G PH +   E D    D  +   L    
Sbjct: 111 --LGTFEEEDY--------------SGEIVVVGVPHLVI--EGDTDKVDWNALLPL---- 148

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVK 249
                  N+++  V    SL +RT+ERGV G T ACGS A + V            V ++
Sbjct: 149 -RHLYDANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGC-EKVILQ 206

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             GG L + +  +   ++ G  +K  E +L+++
Sbjct: 207 ANGGDLTVSFR-DGSAYLGGGVEKCSE-ELELQ 237


>gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 101

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             V DD+    +   G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ 
Sbjct: 1   MIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTG 60

Query: 229 ACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFM 267
           ACA+VVA   L   +    V V + GG L IEW     V M
Sbjct: 61  ACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMM 101


>gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 193

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 23/196 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +    A    +       D ++++        
Sbjct: 1   MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN-----RD 113
             F+   N DGS+   CGNG+RC   +L +   +    F  +T+ G L  + N      D
Sbjct: 60  --FMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S  V+MG+PI + K + +    ++  R++ +I             + MG  H++ FV D
Sbjct: 118 FSARVNMGKPIFNIKEL-INTEKEQFLREKINIDGKEIEI----SYIFMGTDHSVIFVND 172

Query: 174 ----DLYHYDLASFGN 185
               D+  +  +    
Sbjct: 173 FSDYDIDEFPFSLILP 188


>gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 255

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 104/240 (43%), Gaps = 30/240 (12%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115
           A  D ++   N DGS  Q CGNG+R    +L +     R  F   +  G      +R  +
Sbjct: 29  APGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGMEGRDEFVVASAAGPRPVTVHRADA 88

Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF- 170
               I+VDMG+        P   +F+     R   G            V +GNPH     
Sbjct: 89  TRADITVDMGKANTLGSGGP---AFEATVGGRRFAG----------LGVDVGNPHLACVD 135

Query: 171 ---VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                DDL   D+A+   +   H  F EGVN+ +    +  ++ +R  ERGVG T +CG+
Sbjct: 136 PALTADDLAGLDVAA--PVSFDHAQFPEGVNIEVLTAPADGAVRMRVHERGVGETRSCGT 193

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+     T+   ++V++ GG +++   D    ++ G +     G++   +G+W
Sbjct: 194 GTVAAAVAALAAAGTDTGTLAVRVPGGEVVVTVTDATS-YLRGPSVLVAHGEV---SGEW 249


>gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818]
          Length = 462

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLR 213
           R  ++V MGNPHA+  ++  +   D+   G+ L      F + VN+   +V +   + LR
Sbjct: 331 RPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHVRLR 390

Query: 214 TWERGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNH--VFMTG 269
            +ERG G T ACG+ ACA+V A+        +  ++V M GG L + W  + H  + MTG
Sbjct: 391 IFERGAGETLACGTGACAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLTMTG 450

Query: 270 EAKKEWEGKLDI 281
            A   + G + +
Sbjct: 451 PATCCFAGAITL 462



 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDN-----ITSD---AINALSTDDNTHFDQIMLIHDFQD 57
          + F KM+G+GN  +V+D            +  D               FDQ++L+     
Sbjct: 14 LRFWKMQGLGNDFVVVDGVRQPHEVVHRLLDPDHGTLKRLADRRFGVGFDQLLLVQASAT 73

Query: 58 AS 59
          A 
Sbjct: 74 AP 75



 Score = 57.5 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106
            RI N DG EV  CGNG RCV  F+              T++G L
Sbjct: 145 YRIFNADGGEVFQCGNGARCVAAFVKHLGLWSEPRIRVRTLQGTL 189


>gi|326773669|ref|ZP_08232952.1| diaminopimelate epimerase [Actinomyces viscosus C505]
 gi|326636899|gb|EGE37802.1| diaminopimelate epimerase [Actinomyces viscosus C505]
          Length = 316

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54
           +  K     N  L++   GC   I+   I A+         D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                 + F+     DGS  + CGN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGSVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +   +VDMG   L          +D         G       R    V +  PH + 
Sbjct: 131 RLGE-LWTVDMGPARLASPEEADDEGWDTAVDVPGLAGQ------RAALSVEISGPHTVV 183

Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214
            + ++      A  G       +A  P    G NL +      E+            +R 
Sbjct: 184 ALGEESELKAAAFAGLTDSAAPVAYDPAPEAGTNLELVAPLGEETDPDTQSSVGIARVRV 243

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267
            ERGVG + + G+  CA  VA              + + GG + +        ++  V +
Sbjct: 244 LERGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGADPLGEDGSVLL 303

Query: 268 TGEAKKEWEGKLDI 281
           TG A     G++ +
Sbjct: 304 TGPATI--TGRVTV 315


>gi|157364800|ref|YP_001471567.1| diaminopimelate epimerase [Thermotoga lettingae TMO]
 gi|157315404|gb|ABV34503.1| Diaminopimelate epimerase [Thermotoga lettingae TMO]
          Length = 240

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 94/266 (35%), Gaps = 41/266 (15%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN  L+ D       +  D    L  +  T  D  + +        D F+   N D
Sbjct: 6   YSANGNTFLIFDSMTNL--LGDDTKRDLILNYITDQDGAIFVEKS---GQDFFMDYFNRD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           G     CGNG R  V FL      K     F T  G L     ++  ISV M  PI   K
Sbjct: 61  GKRAIFCGNGARAFVAFLRDEGFLKDDHLIFHTKSGTLKGFIQKE-KISVQMPGPIYLGK 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
              +   F+                     ++ +G  H +  V+  +   D+   G  L 
Sbjct: 120 R--VVEEFE-------------------GHLIRVGVLHFVLKVKS-VDRMDVIHEGKRLR 157

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVS 247
                    N+   ++     + +RT+E+GV   T ACGS A A                
Sbjct: 158 A----LTDANIDFYQILEKNCVKMRTFEKGVERETKACGSGAAAVFSICQTDRLL----- 208

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKK 273
           V++ GG L + + + + +F+ GE ++
Sbjct: 209 VEVPGGILCV-YINGDSIFLQGEVRR 233


>gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 231

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 30/245 (12%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGS 115
           A+ D ++   N DGS  Q CGNG+R    +L       R  F   ++ G      +   +
Sbjct: 5   AAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADA 64

Query: 116 ----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               +SVDMG+           ++F+     R   G            V +GNPH     
Sbjct: 65  TGADVSVDMGKANTLGS---GGKAFEATVGGRRFAG----------LAVDVGNPHLACLD 111

Query: 172 E----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                D+L   D+A+   +      F +GVN+ +    +   + +R  ERGVG T +CG+
Sbjct: 112 PELSVDELAALDVAA--PVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGT 169

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+      +   ++V++ GG +++   D    ++ G +     G++   + +W
Sbjct: 170 GTVAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEW 225

Query: 287 IKKNE 291
            ++ +
Sbjct: 226 WQQAQ 230


>gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 86

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
          M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1  MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64 IRIINCDGSEVQSCGNGMRCVVR 86
           RI N DGSEV  CGNG RC  R
Sbjct: 61 YRIFNADGSEVSQCGNGARCFAR 83


>gi|304309744|ref|YP_003809342.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
 gi|301795477|emb|CBL43675.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
          Length = 334

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 98/318 (30%), Gaps = 47/318 (14%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           +  + F KM   G   LVID+   +  I +  I  L+       F  ++++        D
Sbjct: 25  TGRLQFTKMYASGEDFLVIDLVSQYYRIEAQQIQRLAHPQLGIVFGALLMVLPPATPDAD 84

Query: 62  AFIRIINCDGSE-------------VQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106
              R+   +G E             ++  G   RCV +F+  R    +     ET  G L
Sbjct: 85  FRFRLFTANGEEIGRAQEATHPAHLLEMLG-AARCVAQFVRQRQLTNKHQLLIETPLGEL 143

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
             +        +D   P                      +  ++               H
Sbjct: 144 TVQIGEFEEACIDFLPPAWANTFTKSQSFNLVTPSHSTPVTLIHTPAGETGTHS-----H 198

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--------- 217
           A   + D++    L +  + L  H +F +   +   +V + + + LR + R         
Sbjct: 199 A-LLMADNMDRKALQAIASALENHTLFPKQATIMFMQVENRKRVHLRFF-RARTESTFLT 256

Query: 218 ---GVGLTAACG---SAACASVVASGCLHKTNRAVSVKM----LG---GGLLIEWHDNNH 264
              G       G   + A  +          +  V V +     G     L I W  +N 
Sbjct: 257 EDAGAAGALEVGGRDTDAFIAAAVGLRQQLIDHPVQVLLHAPTPGFSAHTLGIHWQGDNQ 316

Query: 265 VF-MTGEAKKEWEGKLDI 281
           V  + G A   +EG + +
Sbjct: 317 VMRLGGTATTVFEGSIAL 334


>gi|325068456|ref|ZP_08127129.1| diaminopimelate epimerase [Actinomyces oris K20]
          Length = 316

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 94/306 (30%), Gaps = 46/306 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54
           +  K     N  L++   GC   I+   I A+         D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGGGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                 + F+     DG+  + CGN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGTVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +   +VDMG   L          +D         GP      R    V +  PH + 
Sbjct: 131 RLGE-LWTVDMGPARLASPEEAEDEGWDTAVVVPGLDGP------RAALSVEISGPHTVV 183

Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214
            + ++      A  G     + +A  P    G NL +A     E+            +R 
Sbjct: 184 ALGEEGELEAAAFAGLTDSADPVAYDPAPEVGTNLELAVPLGEETDPDTQSSVGIARMRV 243

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267
            ERG+G T + G+  CA  VA              + + GG + +         ++ V +
Sbjct: 244 LERGMGETLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGSDPLGADSSVLL 303

Query: 268 TGEAKK 273
           TG A  
Sbjct: 304 TGPAAI 309


>gi|320534674|ref|ZP_08035115.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133108|gb|EFW25615.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 316

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 97/314 (30%), Gaps = 48/314 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-----------HD 54
           +  K     N  L++   GC   I+   I A+         D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                 + F+     DGS  +  GN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGSVAEMSGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +   +VDMG   L          +D        +G       R    V +  PH + 
Sbjct: 131 RLGE-LWTVDMGPVRLTSPEEADDEGWDTAVVVPGLVGQ------RAALSVEISGPHTVV 183

Query: 170 FVEDDLYHYDLASFG-----NLLAKHPMFSEGVNLSIARVTSLES----------LDLRT 214
            + ++      A  G     + +A  P    G NL +      ES            +R 
Sbjct: 184 ALGEEGELEAAAFAGLTDSTDPVAYDPAPEAGTNLELVVPLGEESDPDTHSPVGIARMRV 243

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267
            ERGVG + + G+  CA  VA              + + GG + +        +++ V +
Sbjct: 244 LERGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVRVVADPLGEDSSVLL 303

Query: 268 TGEAKKEWEGKLDI 281
           TG A     G++ +
Sbjct: 304 TGPAAI--TGRVTV 315


>gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 413

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 105/311 (33%), Gaps = 73/311 (23%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIH--- 53
           + +  V F K    GN  +++D            ++ A  A ST      D ++++    
Sbjct: 10  VAAKTVPFVKYTSCGNNFVIVDATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQRSN 69

Query: 54  ----------------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF 97
                               ++ D   R+   +G E   CGNG+ C+  FL  +      
Sbjct: 70  ARTLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVTVS 129

Query: 98  TFETIRG------ILVAKENRDGSISVDMGEPILDW-------KLIPLARSFDKMDRDRF 144
              T         I +     DGS  V++G P            L PL  + D ++    
Sbjct: 130 NIATEIPLSSPNIISIGSLGYDGSW-VNLGMPRHTPTQLVNRDSLHPLDDTIDVIEELTI 188

Query: 145 HIGPVN-------HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS--FGNLLAKH----- 190
                +              ++V  G PH + F + D    +LAS  FG     H     
Sbjct: 189 QFRRDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPEDR 248

Query: 191 ---------------------PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSA 228
                                 +F +GV+++ AR+ +L+S+  R +ERG+   T AC + 
Sbjct: 249 RRGLGAWLVHRIGSFINSRCRHIFPDGVSVNFARIHNLDSVSNRCFERGINRETLACSTG 308

Query: 229 ACASVVASGCL 239
           A A       L
Sbjct: 309 ALAVAYVVQQL 319


>gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 182

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%)

Query: 76  SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
            CGNG R    F     K   + +F T  GI+ AK N+D  + V +G      K+  +  
Sbjct: 1   MCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQD-KVEVSLG------KIKSVQN 53

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
           +F+++ +                 +   G PH + F ++      L  F  +L +     
Sbjct: 54  TFEELGK--------------TWQLCDTGVPHLVHFCQN------LDEFDTILCQKMRQK 93

Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
              N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G
Sbjct: 94  YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153

Query: 254 GLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +   + N  +F  G+ K  +E   +
Sbjct: 154 EKVGFTYKNEELFFEGKVKYCFEANYN 180


>gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni]
          Length = 182

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 29/207 (14%)

Query: 76  SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
            CGNG R    F     K   + +F T  G++ AK N+D  + V +G      K+  +  
Sbjct: 1   MCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQD-KVEVSLG------KIKSVQN 53

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
           +F+++ +                 + + G PH + F ++      L  F  +L +     
Sbjct: 54  TFEELGK--------------TWQLCNTGVPHLVHFCQN------LDEFDTMLCQKMRQK 93

Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
              N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G
Sbjct: 94  YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153

Query: 254 GLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +   + N  +F  G+ K  +E   +
Sbjct: 154 EEVGFAYKNEELFFEGKVKYCFEANYN 180


>gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa]
          Length = 108

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ V
Sbjct: 1   VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 60

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A          V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 61  AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108


>gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum]
          Length = 92

 Score =  132 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
             A+V S  ++ +R WERG G+T ACG+ ACA++VA+     T R   + + GG L IEW
Sbjct: 1   EFAQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEW 60

Query: 260 HDNNHVFMTGEAKKEWEGKLD 280
            +++ V MTG     + G+L 
Sbjct: 61  TEDDRVLMTGPVALAFSGRLS 81


>gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
 gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
          Length = 267

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 111/278 (39%), Gaps = 34/278 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD--FQDASVDAFIRI 66
           +K    GN  L+        N    A+   +       D ++++     +D+++      
Sbjct: 11  SKYCASGNDFLIFHSF-LEQNRAKMAVELCNRFYGIGADGMVVVLPYESKDSNIAYKWEF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGIL-----VAKENRDGSISVDM 120
            N DGS    CGN  R V  +   +++  ++ +F +  GI+        +++   +  ++
Sbjct: 70  YNADGSFAGMCGNASRAVSLYAFHNKLATQNHSFLSGAGIIDTSIKEIIDSKHAYVQSNL 129

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GE +L   ++         +  +  +    H+ +R         PH ++F    +  ++L
Sbjct: 130 GEYVLQGNIV---------ENKKGSVYEFEHIIMRI--------PHLVYF-ATSMKEFNL 171

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            S       H       N++IA +   + +   T+ERGV  +T ACG+ ACA  V+    
Sbjct: 172 LSNDLEFLSHLRHKYDANVNIA-IRENDKIYYVTFERGVENITQACGTGACAVYVSLRDF 230

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWE 276
            KT    ++       L + ++ N  ++ +G   K  +
Sbjct: 231 SKT---YTLIPPSKEKLQVSYN-NGLIYFSGLVTKVCD 264


>gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 119

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 13/120 (10%)

Query: 8   FAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       +++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+      ++V+ G+
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAE------VTVEEGK 117


>gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208]
          Length = 168

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 158 FVVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTW 215
             VS+ NPH I FV+  +   D      + L +++P F +GVN+S  +  + +++ +RT+
Sbjct: 3   SAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLNDDAIYVRTF 62

Query: 216 ERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN--NHV--FMTG 269
           ERGVG T ACG+A  A  +    L        ++V   GG + +   ++    +   + G
Sbjct: 63  ERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIG 122

Query: 270 EAKKEWEGKL----DIKTGKWIKKNEDDEAY 296
            A    +G +    DI T    +   +   Y
Sbjct: 123 NATFVSKGSVRYENDIVTELTNEATAEQAQY 153


>gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
 gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
          Length = 184

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 142 DRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYD-LASFGNLL-AKHPMFSEGVN 198
           ++     V  L     F  VS+ NPH I FV+  +   D      + L +++P F +GVN
Sbjct: 2   EKLFNQVVPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVN 61

Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLL 256
           +S  +    +++ +RT+ERGVG T ACG+A  A  +    L        ++V   GG + 
Sbjct: 62  VSFVKRLRDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQ 121

Query: 257 IEWHDNN----HVFMTGEAKKEWEGKL 279
           +    +      + + G A     G +
Sbjct: 122 VTAKKDETGEISLQLIGNATFVSNGSV 148


>gi|229589602|ref|YP_002871721.1| putative epimerase [Pseudomonas fluorescens SBW25]
 gi|229361468|emb|CAY48344.1| putative epimerase [Pseudomonas fluorescens SBW25]
          Length = 346

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 88/240 (36%), Gaps = 35/240 (14%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----------KR 94
            D +++      A     + I+N DGS  +  GNG+    + LT +              
Sbjct: 84  CDGLLV--GPFQAEPPFDLLIVNTDGSLAERSGNGLTIFAQALTEQALMTDACELRVHHD 141

Query: 95  KSFTFETIRGILVAKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
           K+     +   +      D +   +++G P      +  A+  D+   +   +  ++ L 
Sbjct: 142 KTDAVSPVATRVEPSVREDVAGFWLELGLPTFGPSAV-GAQGVDQAFLEGAELSHISELT 200

Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLYHYDLASF--GNLLA--KHPMFSE--------- 195
             NP       V +GNPH +  VE      D A      L    K   F+          
Sbjct: 201 AINPQWATSQFVRVGNPHCVTLVERVSALPDNAQMQQPALFEALKAIAFAPPAGGGQPCA 260

Query: 196 -GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGG 253
            GVNL  A   S   L  R +ERG G TA+ G++A A   A+          ++V M GG
Sbjct: 261 AGVNLQWAARESRNRLIARVFERGEGPTASSGTSASAVACAAWRAGWVESGDIAVVMPGG 320


>gi|294623973|ref|ZP_06702765.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601728|gb|EFF45673.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 132

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+  V   +    +   G LL  +  F + VN+  A V     + L  + R  G T 
Sbjct: 19  NPHAVVEV-GRVDALPVERLGALLLHNSAFPDSVNVGFAHVVKPGHVRLLVYHRCFGETL 77

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
           ACGS ACA+      L    R V V + GG L I W  +   V M+G A   ++G
Sbjct: 78  ACGSGACAAAEVLMHLGHLERDVQVSLPGGELRIRWPGDQQQVVMSGPAVFVFDG 132


>gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56]
          Length = 138

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIR-GILVAKENRD-GSISVD 119
           FI I+N DGS+ Q+CG     + R     R + K         GIL A E+     +  D
Sbjct: 62  FIDILNSDGSKAQACGK-RHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRDDLPSD 120

Query: 120 MGEPILDWKLIPLARSFD 137
           MG+P+ DW   P    F 
Sbjct: 121 MGKPVFDWGQDPALGRFP 138


>gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
 gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
          Length = 251

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 26/265 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M  F K+   GN  L+   +  +D + S     ++       DQI++I           I
Sbjct: 1   MYKFLKLHSCGNDFLIF-FKKVNDFLIS---KFINKKSGITCDQILIIKKIILDKNIIKI 56

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEP 123
            IIN + S   +CGNG+R +  F   + K  S   F      +++ +N+  +I      P
Sbjct: 57  EIINNNLSRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K+I                  +   FL++ F V + N H I  +++ +  Y L  F
Sbjct: 117 NFFKKII----------------LRIEFYFLKSGF-VELNNLHFITIIKN-IKTYYLFFF 158

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
            N +  +  F+  VN+   ++       +R +E+GVG T +CG+   +S      ++K  
Sbjct: 159 YNKI--NFFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKI 216

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMT 268
              +V  LGG   I + D   + +T
Sbjct: 217 NLFNVYSLGGFSKISFFDK-FIILT 240


>gi|217032381|ref|ZP_03437876.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128]
 gi|216945948|gb|EEC24564.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128]
          Length = 159

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K  G GN  L+        + ++ A       +    D ++++   +D   D    
Sbjct: 1   MVFYKYSGSGNDFLIT-QSFKKRDFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122
             N DGS+   CGN  RCV  F    +   K   F   +  +         I  ++G 
Sbjct: 58  FYNSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGN 115


>gi|312960043|ref|ZP_07774556.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
 gi|311285700|gb|EFQ64268.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
          Length = 339

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 95/267 (35%), Gaps = 47/267 (17%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETI 102
            D +++      A     + I+N DGS  +  GNG+    + LT +              
Sbjct: 77  CDGLLV--GPFQAQPPFDLLIVNTDGSLAERSGNGLTIFAQALTDQGLMTDGCELRVHHD 134

Query: 103 --RGILVAKENRDGSI-------SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
              G+       + ++        + +G P      +  A+  D++  D   +  V+ L 
Sbjct: 135 QPDGVSPVATWVEPAVFEQVAGFWLALGPPAFGPSAV-GAKDVDQVLLDTTELSHVSALA 193

Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE------------- 195
             +P       V +GNPH +  VE      D     + + +  +F               
Sbjct: 194 AIDPHWAHSQFVRVGNPHCVTLVEQASALPD----NSQMQRSALFEALQAIAFAPPAGSG 249

Query: 196 -----GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVK 249
                G+NL  A       +  R +ERG G TA+ G++A A   A+          V+V 
Sbjct: 250 QPCVAGINLQWAAQQPGNRVVARVFERGEGPTASSGTSASAVACAAWRAGWVEAGEVAVV 309

Query: 250 MLGG--GLLIEWHDNN--HVFMTGEAK 272
           M GG   + +   D+    V + G A+
Sbjct: 310 MPGGIAPVRLHVQDDTLLSVSLFGTAR 336


>gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 98

 Score = 99.4 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR------MKRKSFTFETIR 103
           M++HD      DAF+RI N DGSE  +CGNG RCV   L          +  + T ET  
Sbjct: 1   MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           G++  K   D S +VDMG+P L W  IPLA  
Sbjct: 61  GLVAVKRITDRSFTVDMGQPRLRWDEIPLAEP 92


>gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 179

 Score = 99.1 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 31/203 (15%)

Query: 81  MRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139
            R    +     +  K  +F+T  GI+ A  + D                + +A    K 
Sbjct: 5   SRAAALYAYQTPLCSKXCSFKTGAGIIKASIDNDF---------------VEVALXAPKX 49

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL 199
             + F    + + F  + +    G PH + FV D+L  +DL+    L  K+       N+
Sbjct: 50  LSEPF----IEYGFEWSFY--DTGVPHLVTFV-DNLSKFDLSVCSELRKKY-----NANV 97

Query: 200 SIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLI 257
           + A +     L++RT+ERGV   T ACG+   AS        K N  + V       L +
Sbjct: 98  NFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNPCLKVNPKSKEDLWL 157

Query: 258 EWHDNNHVFMTGEAKKEWEGKLD 280
           ++ D   ++  G+ K  ++  + 
Sbjct: 158 KF-DGETIYFKGKVKHCFDTSIS 179


>gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 65

 Score = 98.7 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
          + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1  MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65 RIINC 69
          RI NC
Sbjct: 61 RIFNC 65


>gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria
           immitis]
          Length = 106

 Score = 96.4 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103
             DQ+++I D   A  D F+ I N DGS+V+ CGN  RCV          +  T E    
Sbjct: 15  GCDQVIVITDSSTA--DCFMHIYNADGSKVEMCGNAARCVGYLTMLEKDTEYATIELVNN 72

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            IL   +  D  I V+MG+P+L W  IPL+  
Sbjct: 73  RILECFKVSDKFIKVNMGKPLLKWHEIPLSIE 104


>gi|326445010|ref|ZP_08219744.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 123

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245
           +     +  G  +          L LR  ERG G T +CG+ ACA+V A+          
Sbjct: 1   VEPAGAYPHGTFVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAAATHHTVPEPGT 60

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
             V   GG L +  H +  + +TG A+    G + +  G+
Sbjct: 61  WIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLPRGE 100


>gi|207109146|ref|ZP_03243308.1| diaminopimelate epimerase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 92

 Score = 96.0 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
          + F K  G GN  L+       D  ++ A       +    D ++++   +D   D    
Sbjct: 1  MVFYKYSGSGNDFLITQSFKKKD-FSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWD 57

Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM 92
            N DGS+   CGN  RCV  F     
Sbjct: 58 FYNSDGSKAGMCGNASRCVGLFAYQHA 84


>gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens]
          Length = 61

 Score = 90.2 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
            K+ +F +G N++  +V     +++R WERG G T ACG+  CASV+A+  L   ++ V
Sbjct: 3   RKYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61


>gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510]
 gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510]
          Length = 111

 Score = 88.7 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
           + A  D  + I N DGSEV  CGN  RC+ +++      ++K+ T ET+ GI V K + +
Sbjct: 4   KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63

Query: 114 G----SISVDMGEPIL 125
                 ++VDM  P+L
Sbjct: 64  NELVEEVTVDMDLPLL 79


>gi|213612318|ref|ZP_03370144.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 55

 Score = 81.7 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
          + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  
Sbjct: 1  MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPE 55


>gi|255523491|ref|ZP_05390459.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512748|gb|EET89020.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 74

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 8  FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
          F K  G+GN+ +V++    + ++T  AI  +   +     D I+L    Q    D  ++I
Sbjct: 6  FVKTHGLGNEYIVLNEEKINFSLTQKAIKRICNVNFGIGSDGILL--KVQSNKADFGLKI 63

Query: 67 INCDGSEVQSC 77
           N DGSE +  
Sbjct: 64 FNPDGSEAEKS 74


>gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group]
 gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group]
          Length = 68

 Score = 77.5 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           VG T ACG+ ACA VVA+    +  R   V + GG L IEW + +NH++MTG A+  + G
Sbjct: 5   VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64

Query: 278 K 278
            
Sbjct: 65  S 65


>gi|77460003|ref|YP_349510.1| diaminopimelate epimerase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384006|gb|ABA75519.1| putative epimerase [Pseudomonas fluorescens Pf0-1]
          Length = 330

 Score = 77.1 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 92/250 (36%), Gaps = 36/250 (14%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFE-- 100
           D ++ I  FQ A     + I+N DG+  +  GNG+    R L  +     +  +      
Sbjct: 67  DGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEGATLRVHHD 124

Query: 101 -------TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
                      +  A+        +D+G+P      +  A   + +  +   +  V  L 
Sbjct: 125 KQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAV-GALGVEPVPFNGVEVNRVRPLA 183

Query: 154 LRNPF-----VVSMGNPHAIFFVEDDLY--------HYDLASFGNLLAKHPM------FS 194
             +P       V +GNPH +  V+D++            LA     +A            
Sbjct: 184 QLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPTGAGQPCP 243

Query: 195 EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGG 253
            GVNL  A     + +  R +ERG G TA+ G++A A   A+  +   +   V V M GG
Sbjct: 244 AGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEVQVLMPGG 303

Query: 254 GLLIEWHDNN 263
              I   + +
Sbjct: 304 TAPILLEERD 313


>gi|297521540|ref|ZP_06939926.1| diaminopimelate epimerase [Escherichia coli OP50]
          Length = 56

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           S ACA+V            V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 1   SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 56


>gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
 gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
          Length = 124

 Score = 76.7 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTA 223
           PH + FV++  +   L +      +H       N++IA + + E++ L+T+ERGV   T 
Sbjct: 2   PHLVGFVKNKEWLNSLNTLELRALRHEF---NANINIAFIENKETIFLQTYERGVEDFTL 58

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           ACG+   A  +A+   + T +  ++       L     N+ +F  G  +  
Sbjct: 59  ACGTGMAAVFIAARIFYNTPKKAALIPKSNESLELSLKNDGIFYKGAVRYI 109


>gi|70731390|ref|YP_261131.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68345689|gb|AAY93295.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 329

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 93/265 (35%), Gaps = 41/265 (15%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFE- 100
           D +++            + I+N DG+  +  GNG+    + L  +               
Sbjct: 67  DGLLV--GPFQDVAPFDLLIVNTDGTLAERSGNGLTIFSQALAEQGLLAEQGPTLLQVHH 124

Query: 101 ---TIRGILV-----AKENRDGSISVDMGEPILDWKLIPLARSFDKM---DRDRFHIGPV 149
              T    +      A+        +D+G+P    + +  A   + +    R+   + P+
Sbjct: 125 DQPTGTSPVATVVEPARVAGVPGFWLDLGQPSFGPEAV-AAIGVETVTLNGRELSRVAPL 183

Query: 150 NHLFLRNPF--VVSMGNPHAIFFVEDD--LYHYDLASFGNLLA--KHPMF---------- 193
             L         V +GNPH +  +ED   L          L        F          
Sbjct: 184 QALDPLWEHSQFVRIGNPHCVTLLEDAEALPGNPQMLEAPLAEGLTATAFALPLGSGEPC 243

Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLG 252
             GVNL  A   S + +  R +ERG G TA+ G++A A   A+  +       V V M G
Sbjct: 244 PAGVNLQWAARESAQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVKAGEVQVVMPG 303

Query: 253 GG--LLIEWHDNN--HVFMTGEAKK 273
           G   L +E  D     V + G+A +
Sbjct: 304 GTAPLRLEEQDGELRRVCLFGQAVR 328


>gi|330810830|ref|YP_004355292.1| epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327378938|gb|AEA70288.1| Putative epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 330

 Score = 72.5 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 41/266 (15%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFET 101
           D ++ I  FQ       + I+N DG+  +  GNG+    + L ++               
Sbjct: 67  DGLL-IGPFQSEPP-FDLLIVNTDGTLAERSGNGLTIFSQALQAQGLMPGAGECVLQVHH 124

Query: 102 IR---------GILVAKENRDGSISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGP 148
            +          +  A+ +      +D+G+P+   + +         F++ D  R     
Sbjct: 125 DKPDGLSPLQTSVRAAEFDGVQGFWLDLGKPLFGAQAVGAQEVESVMFNQCDVSRVAALH 184

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---------LASFGNLLAKHP------MF 193
             +    +   VS+GNPH +  V   +             L+     +A           
Sbjct: 185 QLNPAWGHSQFVSIGNPHCVTLVAG-VEALPGNSQMRAAALSQSLTRIAYAAPGGAGVPC 243

Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLG 252
             GVNL  A   +   +  R +ERG G TA+ G++A A   A+  +      AVSV M G
Sbjct: 244 PRGVNLQWAWHEAEGRIAARVFERGEGPTASSGTSASAVASAAWRVGWVQAGAVSVVMPG 303

Query: 253 GGLLIEWHDNN----HVFMTGEAKKE 274
           G   I   +       V + G A+  
Sbjct: 304 GTAPILLEEEAGELVRVRLFGTARLV 329


>gi|330976603|gb|EGH76647.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 52

 Score = 71.3 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           A+ VA+      +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 1   AAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 52


>gi|255523492|ref|ZP_05390460.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512749|gb|EET89021.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 60

 Score = 68.6 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208
            VSMGNPH +   + +L   ++  +G  +  H MF    N+  A+V S  
Sbjct: 12  CVSMGNPHCVIL-KQELSIDEIKEYGRFIENHSMFPNRTNVQFAKVLSRS 60


>gi|315647127|ref|ZP_07900240.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453]
 gi|315277329|gb|EFU40658.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453]
          Length = 293

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 100/303 (33%), Gaps = 61/303 (20%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDA 58
              +DF K     N  ++I        +  D    ++      DN + +Q+  I  F+  
Sbjct: 2   KHKIDFVKCNPTQNMTVLI-----KSKLPPDDYKVIAAKIMSYDNVYAEQVGFIEPFRKE 56

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN 111
           + DA + +     +  + CGN    +  +L +                  +  ++  +  
Sbjct: 57  NADARLHM-----AGGEFCGNACMALAAYLANEQGLNQNETTELHLQVSGVERLVTCRIT 111

Query: 112 R---DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           +   D    VDM  P+              +++   + G  ++  +   +   +   H +
Sbjct: 112 KNSGDYQCQVDMPLPL-------------TIEQTVLNDGSDSYDMIVVRYSDFV---HFV 155

Query: 169 FFVEDDLYHYD------LASFGNLLAKHPM----FSEGVNLSIARVTSLESLDLRTWERG 218
             VED            +   G LL    +    ++      +A +  +  LD   WERG
Sbjct: 156 IEVEDIDTEMKRKMLNLVKLIGPLLDTKMLGILLYNIRT-SELAPLIYVSDLDSAVWERG 214

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVF---MTGEAKKE 274
                 CGS   +        ++ +   +++  GG + +  ++D   +    + G     
Sbjct: 215 ------CGSGTASVGAYLAWKNQKSMEAAIQQPGGTIQVRAFYDQERLTQLEIEGNVGIV 268

Query: 275 WEG 277
            +G
Sbjct: 269 AQG 271


>gi|227547141|ref|ZP_03977190.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212374|gb|EEI80270.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 79

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DGS  + CGNG RC+  +L      +  +F  ++       K   +G  +V MG P  +
Sbjct: 1   ADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHEVKVLGEGQFAVTMGVPAFE 60

Query: 127 WKLIPL 132
              +PL
Sbjct: 61  PANVPL 66


>gi|227529421|ref|ZP_03959470.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350662|gb|EEJ40953.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
          Length = 80

 Score = 63.6 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 81  MRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138
            RC  RF  L     ++     T  G +V     D  + V+MGEP  +   +P    F  
Sbjct: 1   ARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVP----FRA 56

Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMG 163
              ++ +I       +    VVSMG
Sbjct: 57  NKAEKTYIMRAAEQTILCG-VVSMG 80


>gi|254303513|ref|ZP_04970871.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323705|gb|EDK88955.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 264

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 50/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I D         ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKDS-------HLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++   G   + CGN  R     L  R     K+K+++  T  G        D  + +D  
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKAFSKQKNYSI-TCSGESSV---LDVDVRIDGA 111

Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177
           +     K+ +P   S ++++ D + +G V             G  H IF ++++      
Sbjct: 112 QNKFLAKIKMPKFISLEEINVDEYKLGLVRFS----------GINHFIFNIKENKETSFE 161

Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230
              DL         +  F     +        ++L ++ +    E G G+   +C S   
Sbjct: 162 NIIDLVKKCLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A           +R   +    G L     +N+ +++ G  +   EGK+ IK
Sbjct: 215 ALGYYLKKYKNLDR-AKIVQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264


>gi|329928299|ref|ZP_08282187.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5]
 gi|328937933|gb|EGG34336.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5]
          Length = 293

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 90/277 (32%), Gaps = 53/277 (19%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
              +DF K     N  ++I+ +   D     A   +S D N + +Q+  I        DA
Sbjct: 2   KQKIDFVKCNPTQNMTILINTKLPPDEHKRVAAKIMSYD-NVYAEQVGFIEQSMKDDADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGI-----LVAKENR 112
           F+R+     +  + CGN    +  +L       R     F  E           + K   
Sbjct: 61  FLRM-----AGGEFCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKE 115

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170
           D    V+M  P+             ++D+     G   V+ + +R    V     H +  
Sbjct: 116 DYRCRVNMPLPV-------------RIDQTVLQDGCSLVDAVVVRYKDFV-----HFVIE 157

Query: 171 VEDDLYHYD------LASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVG 220
           VE      +          G  L        +++  +   +  +  +  L+   WERG  
Sbjct: 158 VERFDAQMNSSMLAMAKHIGPFLDARMVGILLYNSRI-RELTPLIYVPELNSAVWERG-- 214

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLI 257
               CGS   +        HK     S+K  GG + +
Sbjct: 215 ----CGSGTASVGAYLAWKHKRGVEASIKQPGGTIHV 247


>gi|260495528|ref|ZP_05815653.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33]
 gi|260196870|gb|EEW94392.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33]
          Length = 265

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 100/292 (34%), Gaps = 52/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           ++   G   + CGN  R     L       S+ K  S T      +L      DG+    
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYSITCSGESSVLDVDVREDGA---- 111

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177
                L    +P   S +++  D + +G V             G  H IF ++++     
Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETSF 160

Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229
               DL         +  F     +        ++L ++ +    E G G+   +C S  
Sbjct: 161 ENIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A           +R   +    G L     +N+ +++ G  +   EG++ I
Sbjct: 214 TALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGPVEIVAEGEVYI 263


>gi|261406672|ref|YP_003242913.1| hypothetical protein GYMC10_2835 [Paenibacillus sp. Y412MC10]
 gi|261283135|gb|ACX65106.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 293

 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 90/277 (32%), Gaps = 53/277 (19%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
              +DF K     N  ++I+ +   D     A   +S D N + +Q+  I        DA
Sbjct: 2   KQKIDFVKCNPTQNMTILINTKLPPDEHKRVAAKIMSYD-NVYAEQVGFIEQSMKDDADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGI-----LVAKENR 112
           F+R+     +  + CGN    +  +L       R     F  E           + K   
Sbjct: 61  FLRM-----AGGEFCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKE 115

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170
           D    V+M  P+             ++D+     G   V+ + +R    V     H +  
Sbjct: 116 DYRCRVNMPLPV-------------RIDQTILQDGCSLVDAVVVRYKDFV-----HFVIE 157

Query: 171 VEDDLYHYD------LASFGNLLAKHP----MFSEGVNLSIARVTSLESLDLRTWERGVG 220
           VE      +          G  L        +++  +   +  +  +  L+   WERG  
Sbjct: 158 VERFDAQMNSSMLAMAKHIGPFLDARMVGILLYNSRI-RELTPLIYVPELNSAVWERG-- 214

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLI 257
               CGS   +        HK     S+K  GG + +
Sbjct: 215 ----CGSGTASVGAYLAWKHKRGVEASIKQPGGTIHV 247


>gi|19705053|ref|NP_602548.1| hypothetical protein FN1732 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712971|gb|AAL93847.1| Hypothetical protein FN1732 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 265

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 52/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I D         ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKDS-------HLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           ++   G   + CGN  R     L       S+ K  + T      +L      DG+    
Sbjct: 61  MM---G--GEFCGNASRAFASLLAFRDKDFSKQKNYNITCSGESKVLDVDVRNDGA---- 111

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177
                L    +P   S ++++ D + +G V             G  H IF ++++     
Sbjct: 112 -KNKFLAKIKMPKFLSLEEINVDEYKLGLVRFS----------GINHFIFNIKENKETSF 160

Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229
               DL        ++  F     +        ++L ++ +    E G G+   +C S  
Sbjct: 161 ENIIDLVKKYLSNEEYSAF----GIMFF---DSDNLSMKPYVYVKEVGSGVYENSCASGT 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A           +R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 214 TALGYYLKKCKNLDR-AKIVQPNGWLE-YIIENDEMYIDGPVEIIAEGKIYI 263


>gi|237743006|ref|ZP_04573487.1| diaminopimelate epimerase [Fusobacterium sp. 7_1]
 gi|229433566|gb|EEO43778.1| diaminopimelate epimerase [Fusobacterium sp. 7_1]
          Length = 264

 Score = 59.8 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 104/292 (35%), Gaps = 50/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++   G   + CGN  R     L        K+K+++  T  G        D  +  D  
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYSI-TCSGESSV---LDVDVREDEA 111

Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177
           +     K+ +P   S +++  D + +G V             G  H IF ++++      
Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETNFE 161

Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230
              DL         +  F     +        ++L ++ +    E G G+   +C S   
Sbjct: 162 NIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A           +R   +    G L     +N+ +++ G  +   EGK+ IK
Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264


>gi|314934890|ref|ZP_07842249.1| diaminopimelate epimerase family protein [Staphylococcus caprae
           C87]
 gi|313652820|gb|EFS16583.1| diaminopimelate epimerase family protein [Staphylococcus caprae
           C87]
          Length = 280

 Score = 59.4 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 57/301 (18%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +V+F+K    GN  +++  +   +   S A   ++T  +   +Q+  I      + 
Sbjct: 1   MHRQIVEFSKYNPSGNMTILVHSKHHPEEYASIANQLMAT-THVCCEQVGFIESSDYTNG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L      +S             +    +    
Sbjct: 60  DQFHLVM-----SGNEFCGNATMSYIHYLQEHQLLESEQFQLKISGCSQTVSCTVHNQQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V M +      ++P          D   +    ++             H +   ++  
Sbjct: 115 YEVGMPQVQ---SIVPRQLIIAGQPYDALELIYETYI-------------HYVIQTQETT 158

Query: 176 YHY--DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL----------RTWERGVGLTA 223
            ++   +  F      H  F     + I    S +   +            WE       
Sbjct: 159 MNFKYQVEQFVREQQWHTTFKT---IGIMLFDSRQHFLMPLIYIPEVQSLIWE------K 209

Query: 224 ACGSAACASVVASGCLHKTNRAV---SVKMLGGGLLIE---WHDNNHVF-MTGEAKKEWE 276
           +CGS A +  V     ++TN+      VK  GG +++     +   ++  + G+      
Sbjct: 210 SCGSGAASIGV--LQQYQTNQPCKDFKVKQPGGSIVVSSTYSNKKGYITSIKGQVSTVAT 267

Query: 277 G 277
           G
Sbjct: 268 G 268


>gi|27467119|ref|NP_763756.1| diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228]
 gi|27314661|gb|AAO03798.1|AE016744_201 diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228]
          Length = 279

 Score = 59.4 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 96/303 (31%), Gaps = 52/303 (17%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V M       K+  +   F K+   +F    +++              H +   +D  
Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157

Query: 176 YHYD--LASFGNLLAKHPMFSE------GVNLSIARV-TSLESLDLRTWERGVGLTAACG 226
                 +  F +    H  F          N         + ++D   WE       +CG
Sbjct: 158 LAIKQRVEDFVSAQTWHRQFKTIGIMLFQQNKQFIYPLIHIPAIDSLIWE------NSCG 211

Query: 227 SAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           S A +  V     + T+  +    V   GG +++    +        + G+      G+ 
Sbjct: 212 SGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQA 269

Query: 280 DIK 282
            I+
Sbjct: 270 YIE 272


>gi|256846137|ref|ZP_05551595.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2]
 gi|256719696|gb|EEU33251.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2]
          Length = 265

 Score = 58.6 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 103/289 (35%), Gaps = 50/289 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++   G   + CGN  R     L        ++K+++  T  G     E  D  +  D  
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---NEVLDVDVREDGA 111

Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177
           +     K+ +P   S +++  D + +G V             G  H IF ++++      
Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKELSFE 161

Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230
              DL         +  F     +        ++L ++ +    E G G+   +C S   
Sbjct: 162 NIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A           +R   +    G L     +NN +++ G  +   EGK+
Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENNEIYIDGPVEIIAEGKV 261


>gi|254883779|ref|ZP_05256489.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|319643507|ref|ZP_07998130.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
 gi|254836572|gb|EET16881.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|317384912|gb|EFV65868.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
          Length = 61

 Score = 58.2 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
           DD+   +L + G  L  HP+F E  N+    V S   
Sbjct: 5   DDIKDVNLPAIGPKLENHPLFPERTNIEFVEVLSHNK 41


>gi|256028327|ref|ZP_05442161.1| hypothetical protein PrD11_10087 [Fusobacterium sp. D11]
 gi|289766253|ref|ZP_06525631.1| diaminopimelate epimerase [Fusobacterium sp. D11]
 gi|289717808|gb|EFD81820.1| diaminopimelate epimerase [Fusobacterium sp. D11]
          Length = 265

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 99/292 (33%), Gaps = 52/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           ++   G   + CGN  R     L       S  K  S T      +L      +G+    
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSITCSGESSVLDVDVRENGA---- 111

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177
                L    +P   S +++  D + +G V             G  H IF ++++     
Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKETNF 160

Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229
               DL         +  F     +        ++L ++ +    E G G+   +C S  
Sbjct: 161 ENIIDLVKKYLSNEDYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A           +R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 214 TALGYYLKKYKNLDR-AKIVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263


>gi|319400468|gb|EFV88702.1| diaminopimelate epimerase [Staphylococcus epidermidis FRI909]
          Length = 279

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 102/300 (34%), Gaps = 46/300 (15%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF-----F 170
             V M       K+  +   F K+   +F    +++    +  ++  G   A+      F
Sbjct: 114 YEVTM------PKVHQVKERFVKLGDQQFKAFEISYDTYIHYVLMCDGVDLAMKQRVEDF 167

Query: 171 VEDDLYHYDLASFGN-LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           V    +H    + G  L  +   F       I  +  +  +D   WE       +CGS A
Sbjct: 168 VSAQTWHQQFKTIGVMLFQQDKQF-------IYPLIHIPKIDSLIWE------NSCGSGA 214

Query: 230 CASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
            +  V     + T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 215 ASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|260655345|ref|ZP_05860833.1| diaminopimelate epimerase family protein [Jonquetella anthropi
           E3_33 E1]
 gi|260629793|gb|EEX47987.1| diaminopimelate epimerase family protein [Jonquetella anthropi
           E3_33 E1]
          Length = 257

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 90/304 (29%), Gaps = 64/304 (21%)

Query: 4   SMVDFAKMEGIGN------KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
             VDF K+   GN        +          +       L + D+   +Q+  +     
Sbjct: 1   MKVDFVKVNPAGNVTIFVTSFV-------PVELQPAVAKELMSSDHVGGEQVGFVSGR-- 51

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVR---FLTSRMKRKSFTFETIRGILVAKENRDG 114
                 +R+     +  + CGN  R +     F         +T + + G+         
Sbjct: 52  -----RLRM-----AGGEFCGNATRSLAALWAFEEGTTGPAQYTVD-VSGVTSPI----- 95

Query: 115 SISVDM-GEPILDWKLI--PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            ++V   G P +    +  P     D++  + +    V+            G  H +   
Sbjct: 96  QVTVQAEGMPGVFRADVLMPQPLGQDEVSLEGYAAFRVDFG----------GIVHYVVEG 145

Query: 172 EDDLYHYDLAS----FGNLLAKHPMFSEGVNLS-IARVTSLESLDLRTWERGVGLTAACG 226
             D      A     +G   A   MF +G  L     V  +  +    WE       +C 
Sbjct: 146 APDEKVISAARTQMGYGRWDAFGVMFLQGDRLDPYVEVNGVSGM----WE------NSCA 195

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           S + A            R  S++  GG L + W     V ++G       G+  +    W
Sbjct: 196 SGSSAVACLLQSRTPKGR-ASLRQPGGTLSVSWDGRG-VLLSGPVAIVARGEAFLSELSW 253

Query: 287 IKKN 290
            +  
Sbjct: 254 EEAG 257


>gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 262

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 110/303 (36%), Gaps = 68/303 (22%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I        D  
Sbjct: 1   MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNH 53

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGI--LVAKENRDGSISV 118
           ++++   G   + CGN  R     L  R K   ++     T  G   ++A + R+G    
Sbjct: 54  LQMM---G--GEFCGNASRSFASLLAFRDKDFSKQKIYKITCSGEDEILAVDVREGQ--- 105

Query: 119 DMGEPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174
              E     K+ +P  +S +++  D + +G V             G  H IF V ++   
Sbjct: 106 --TENSFLAKIKMPKFKSLEELKIDNYKLGLVKFS----------GIDHFIFDVAENKED 153

Query: 175 ------------LYHYDLASFGNLLAKHPMFSEGVNLS---IARVTSLESLDLRTWERGV 219
                       L   D ++FG       MF +  NLS      V     ++   +E   
Sbjct: 154 NFEKVIDSVKNYLSDKDFSAFG------IMFFDRQNLSMKPYVYVKD---IESGIFE--- 201

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +C S   A           +R   +    G L     +N+ +++ G  +   EGK+
Sbjct: 202 ---NSCASGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKV 256

Query: 280 DIK 282
            I+
Sbjct: 257 YIQ 259


>gi|329732780|gb|EGG69128.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU028]
          Length = 279

 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 54/304 (17%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP------HAIF 169
             V M       K+  +   F K+   +F    +++        V M +         + 
Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDT--YIHYVMMCDDVDLAIKQCVE 165

Query: 170 -FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            FV    +H    + G +L +     ++       +  + +++SL    WE       +C
Sbjct: 166 DFVSAQTWHRQFKTIGVMLFQQDKQFIYP------LIHIPAIDSL---IWE------NSC 210

Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
           GS A +  V     + T+  +    V   GG +++    +        + G+      G+
Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQ 268

Query: 279 LDIK 282
             I+
Sbjct: 269 AYIE 272


>gi|329732095|gb|EGG68449.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU144]
          Length = 279

 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 54/304 (17%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V M       K+  +   F K+   +F    +++              H +   +D  
Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157

Query: 176 YHYD--LASFGNLLAKHPMFSEGVNLSIARVTSL--------ESLDLRTWERGVGLTAAC 225
                 +  F +    H  F   + + + +             ++D   WE       +C
Sbjct: 158 LAIKQRVEDFVSAQTWHRQFKT-IGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSC 210

Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
           GS A +  V     + T+  +    V   GG +L+    +        + G+      G+
Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSILVSSRKSGQNEYQTTIKGQVSTVATGQ 268

Query: 279 LDIK 282
             I+
Sbjct: 269 AYIE 272


>gi|260887994|ref|ZP_05899257.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC
           35185]
 gi|330838527|ref|YP_004413107.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185]
 gi|260862245|gb|EEX76745.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC
           35185]
 gi|329746291|gb|AEB99647.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185]
          Length = 265

 Score = 56.7 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 92/289 (31%), Gaps = 44/289 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+  +GN  + +      +   +    A+  D +   +Q   +           I 
Sbjct: 3   LDFIKLSPLGNTTVFLRGEAAQEARAALLAEAMDYD-HLAAEQAGFLVAPHAEEALFRIE 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +     S  + CGN          +      F  E   G    +  R  +  +  G   L
Sbjct: 62  M-----SGGEFCGNATLSAAALAAAEGAESRFLVE-CSG--APEPLRAEAHPLGSGRW-L 112

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDLAS-F 183
               +P A    ++  D F  G            VS+ G  H +     DL   D     
Sbjct: 113 ARAEMPPAHEVRRISLDGFSFGGA-------AICVSLPGIAHLVVE-AADLSAADYDELL 164

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLR-----------TWERGVGLTAACGSAACAS 232
             L+ +    + GV +        E   +R            +ER      ACGS + A 
Sbjct: 165 ARLMRETDADAYGV-VPF-ERMGREHFRIRPYVAVPSAKSHVFER------ACGSGSLAL 216

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +A          ++V+  GG LL+E       F+ GE      G +++
Sbjct: 217 ALA---EGSECGRIAVEQPGGTLLVET--GRRFFLEGEVLISCRGTVEL 260


>gi|296329315|ref|ZP_06871816.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153671|gb|EFG94488.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 263

 Score = 56.3 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 52/292 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I +         ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKEK-------HLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++   G   + CGN  R     L        ++K+++  T  G     E  D  +  D  
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---SEVLDVDVRTDGA 111

Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177
           +     K+ +P   S +++  D + +G V             G  H IF ++++      
Sbjct: 112 KNKFLAKIKMPKFISLEEISIDEYKLGLVRFS----------GISHFIFNIKENKETSFE 161

Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACGSAA 229
              DL         +  F     +        ++L ++ +      E G+    +C S  
Sbjct: 162 NIIDLVKKYLSNEDYSAF----GIMFF---DKDNLSMKPYVYVKELESGIYE-NSCASGT 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A           +R   V    G L     +N+ +++ G  +   EGK+ I
Sbjct: 214 TALGYYLKKYKNLDR-AKVVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263


>gi|57865749|ref|YP_189923.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis RP62A]
 gi|251811536|ref|ZP_04826009.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876692|ref|ZP_06285548.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis SK135]
 gi|57636407|gb|AAW53195.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis RP62A]
 gi|251804914|gb|EES57571.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294343|gb|EFA86881.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis SK135]
 gi|329735791|gb|EGG72071.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU045]
          Length = 279

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 54/304 (17%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP------HAIF 169
             V M       K+  +   F K+   +F    +++        V M +         + 
Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDT--YIHYVMMCDDVDLAIKQCVE 165

Query: 170 -FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            FV    +H    + G +L +     ++       +  + +++SL    WE       +C
Sbjct: 166 DFVSAQTWHRQFKTIGVMLFQQDKQFIYP------LIHIPAIDSL---IWE------NSC 210

Query: 226 GSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
           GS A +  V     + T+  +    V   GG +++    +        + G+      G+
Sbjct: 211 GSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQ 268

Query: 279 LDIK 282
             I+
Sbjct: 269 AYIE 272


>gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
 gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
          Length = 45

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 2   QGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 45


>gi|293367479|ref|ZP_06614137.1| diaminopimelate epimerase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318425|gb|EFE58813.1| diaminopimelate epimerase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 279

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 96/306 (31%), Gaps = 58/306 (18%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
           D   + +     S  + CGN     + +L  R+  +              +  K +    
Sbjct: 60  DNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQH- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V M       K+  +   F K+   +F    +++              H +   +D  
Sbjct: 114 YEVTM------PKVHQVKERFVKLGEQQFKAFEISYDTYI----------HYVMMCDDVD 157

Query: 176 YHYD--LASFGNLLAKHPMF---------SEGVNLSIARV-TSLESLDLRTWERGVGLTA 223
                 +  F +    H  F          +            + ++D   WE       
Sbjct: 158 LAIKQCVEDFVSAQTWHRQFKTIGVMLFQPDK---QFIYPLIHIPAIDSLIWE------N 208

Query: 224 ACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWE 276
           +CGS A +  V     + T+  +    V   GG +++    +        + G+      
Sbjct: 209 SCGSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVAT 266

Query: 277 GKLDIK 282
           G+  I+
Sbjct: 267 GQAYIE 272


>gi|331083333|ref|ZP_08332446.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404414|gb|EGG83959.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 259

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 39/261 (14%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                 L   +  H +Q+  +   QD S    +          + CGN  R     L+  
Sbjct: 28  PAISRELLCMEELHGEQVGFVEKMQDGSFHMQMM-------GGEFCGNATRSFGYLLSML 80

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
            + K+        + V+   +   ++VDM +       +PL     ++         V  
Sbjct: 81  SEEKAEDVW----VDVSGSQKKLKVAVDMEKGT-ARTEMPLPMEIKEISVKEEKYSMVVF 135

Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHY----DLASFGNL-LAKHPMFSEGVNLSIARVTS 206
             + +  V S   P A  FV++ +          ++G + L +  M        +  V S
Sbjct: 136 EGICHIIVNSA--PKAQEFVDELIEKAKRVCPCDAYGVMFLEESKMTP------VVYVES 187

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNH 264
             S+    WE      ++CGS +  + V       T   V  +   GG +      +N  
Sbjct: 188 TTSM---VWE------SSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGK 238

Query: 265 VF---MTGEAKKEWEGKLDIK 282
           VF   M G      E K+DIK
Sbjct: 239 VFSCKMGGPVTISEEMKVDIK 259


>gi|302061755|ref|ZP_07253296.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
          Length = 40

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 4  SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD 42
           ++ F KM G+GN  +V+D+   H +I            
Sbjct: 1  MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRH 39


>gi|262066039|ref|ZP_06025651.1| putative diaminopimelate epimerase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380290|gb|EFE87808.1| putative diaminopimelate epimerase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 261

 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 109/298 (36%), Gaps = 54/298 (18%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I +         
Sbjct: 1   MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKNN-------H 53

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120
           ++++   G   + CGN  R     L  R K   ++     T  G        D  ++VD+
Sbjct: 54  LQMM---G--GEFCGNASRAFASLLAFRDKTFSKQKIYKITCSG-------EDEVLNVDI 101

Query: 121 GEPILDWK-----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---E 172
            E   +        +P  +S +++  D + +G V             G  H IF +   +
Sbjct: 102 REGQTENSFLAKIKMPKFKSLEEIKIDSYKLGLVKFS----------GIDHFIFDIAENK 151

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACG 226
           +D +   + S  N L+     + G           E+L ++ +      E G+    +C 
Sbjct: 152 EDNFEKIIDSVKNYLSDKDFSAFG-----IMFFDKENLFMKPYVYVKEVESGIFE-NSCA 205

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           S   A           +R   +    G L     +N+ +++ G  +   EG + +K G
Sbjct: 206 SGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGSVYVKRG 261


>gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
 gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
          Length = 258

 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 108/295 (36%), Gaps = 54/295 (18%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
             +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I        D  
Sbjct: 1   MKLDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNH 53

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120
           ++++   G   + CGN  R     L  R K   ++     T  G        D  ++VD+
Sbjct: 54  LQMM---G--GEFCGNASRAFASLLAFRDKTFSKQKIYKITCSG-------EDEVLAVDV 101

Query: 121 GEPILDWK-----LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---E 172
            E   +        +P  +S +++  D + +G V    +           H IF +   +
Sbjct: 102 REGQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKFSGIG----------HFIFDIAKNK 151

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW------ERGVGLTAACG 226
           +D +   + S  N L+     + G           E+L ++ +      E G+    +C 
Sbjct: 152 EDNFEKVIDSVKNYLSDKDFSAFG-----IMFFDRENLSMKPYVYVKEVESGIFE-NSCA 205

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S   A           +R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 206 SGTTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYI 258


>gi|260588942|ref|ZP_05854855.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260540721|gb|EEX21290.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 259

 Score = 53.6 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 41/262 (15%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                 L   +  H +Q+  +   QD S    +          + CGN  R     L+  
Sbjct: 28  PAISRELLCMEELHGEQVGFVEKMQDGSFHMQMM-------GGEFCGNATRSFGYLLSML 80

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL-IPLARSFDKMDRDRFHIGPVN 150
            + K+        + V+   +   ++VDM +     ++ +P+  +   +  +++ +  V 
Sbjct: 81  SEEKAEDVW----VDVSGSKKKLKVTVDMEKGTARTEMSLPMEMTEVSVKEEKYSM--VV 134

Query: 151 HLFLRNPFVVSMGNPHAIFFVEDDLYHY----DLASFGNL-LAKHPMFSEGVNLSIARVT 205
              + +  V S   P A  FV++ +          ++G + L +  M        +  V 
Sbjct: 135 FEGICHIIVNSA--PKAQEFVDELIEEAKRVCPCDAYGVMFLEESKMTP------VVYVE 186

Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNN 263
           S  S+    WE      ++CGS +  + V       T   V  +   GG +      +N 
Sbjct: 187 STTSM---VWE------SSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENG 237

Query: 264 HVF---MTGEAKKEWEGKLDIK 282
            VF   M G      E K+DIK
Sbjct: 238 KVFSCKMGGPVTISEEMKVDIK 259


>gi|282917824|ref|ZP_06325574.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283767554|ref|ZP_06340469.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19]
 gi|282318109|gb|EFB48469.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283461433|gb|EFC08517.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19]
          Length = 273

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 43/299 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169
             V M +   +    I +     K     +     ++ PVN +      +V         
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228
           +V +  +++   + G +L               +    +  +    WE       +CGS 
Sbjct: 168 YVREQQWNHKYKTVGMMLFNEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214

Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +  V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|329315155|gb|AEB89568.1| hypothetical protein SAT0131_02669 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 273

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 39/297 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++    P   V+    H +  FV +
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171

Query: 174 DLYHYDLASFGNLL--AKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAAC 230
             + +   + G +L   +H            +    +  +    WE       +CGS   
Sbjct: 172 QQWSHKYKTVGMMLFDEQH---------QFLQPLIYIPEIQSLIWE------NSCGSGTA 216

Query: 231 ASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
           +  V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 217 SIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|332798764|ref|YP_004460263.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1]
 gi|332696499|gb|AEE90956.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1]
          Length = 264

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 85/278 (30%), Gaps = 57/278 (20%)

Query: 26  CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85
           C  +  S         D  H +Q+  I           + +     +  + CGN      
Sbjct: 22  CPQSYYSAVAEKAMNYDYLHAEQVGFIVPPSKKDSVIRLEM-----AGGEFCGNATLSAA 76

Query: 86  RFLT--SRMKRKSFTFET--IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141
            ++       +++F+ +       +  +  +  +   +         ++P A+  DKM+ 
Sbjct: 77  AYVRYKGLSDKENFSIDASGAAEPIRCRVEKVNTYCYN------TSCIMPPAKRIDKMEL 130

Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-----------YHYDLASFGNLLA-- 188
           +      +    ++   V   G  H +   +++               D  + G +    
Sbjct: 131 E------LQGKIIKGYIVEFEGISHFVLETKEEFVEYSEVTQALKKAIDTNAIGVIPYET 184

Query: 189 -KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +   +          V     ++   +ERG      CGS + A       +   +R + 
Sbjct: 185 IRDDTYKIKP---FVYVK---EINSNVFERG------CGSGSLALGTYLKRVRGISREIR 232

Query: 248 VKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
           V   GG + +   D       V +T       EG++ I
Sbjct: 233 VVQPGGVIRVGIADEFFISTDVILT------CEGRILI 264


>gi|21284123|ref|NP_647211.1| hypothetical protein MW2394 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487253|ref|YP_044474.1| hypothetical protein SAS2361 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650980|ref|YP_187276.1| hypothetical protein SACOL2479 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82752066|ref|YP_417807.1| hypothetical protein SAB2353c [Staphylococcus aureus RF122]
 gi|87160489|ref|YP_495049.1| hypothetical protein SAUSA300_2414 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196406|ref|YP_501229.1| hypothetical protein SAOUHSC_02770 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222579|ref|YP_001333401.1| hypothetical protein NWMN_2367 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510671|ref|YP_001576330.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140401|ref|ZP_03564894.1| hypothetical protein SauraJ_02051 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253734105|ref|ZP_04868270.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451224|ref|ZP_05699257.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262049914|ref|ZP_06022775.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30]
 gi|262052652|ref|ZP_06024845.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3]
 gi|282920460|ref|ZP_06328183.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284025490|ref|ZP_06379888.1| hypothetical protein Saura13_12922 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849020|ref|ZP_06789765.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754]
 gi|297209707|ref|ZP_06926103.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300910720|ref|ZP_07128170.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379670|ref|ZP_07362403.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21205566|dbj|BAB96259.1| MW2394 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245696|emb|CAG44175.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285166|gb|AAW37260.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82657597|emb|CAI82042.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|87126463|gb|ABD20977.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203964|gb|ABD31774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150375379|dbj|BAF68639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369480|gb|ABX30451.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253727800|gb|EES96529.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861016|gb|EEV83831.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259159460|gb|EEW44511.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3]
 gi|259161990|gb|EEW46571.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30]
 gi|269942051|emb|CBI50463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594406|gb|EFB99392.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824399|gb|EFG40823.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754]
 gi|296885380|gb|EFH24317.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300887700|gb|EFK82895.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341846|gb|EFM07752.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196317|gb|EFU26670.1| hypothetical protein CGSSa01_01196 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139179|gb|EFW31061.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142566|gb|EFW34374.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329726727|gb|EGG63188.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730442|gb|EGG66832.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 273

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++    P   V+    H +  FV +
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             + +   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWSHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|15925460|ref|NP_372994.1| hypothetical protein SAV2470 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15928049|ref|NP_375582.1| hypothetical protein SA2258 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268907|ref|YP_001247850.1| hypothetical protein SaurJH9_2497 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394982|ref|YP_001317657.1| hypothetical protein SaurJH1_2546 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980785|ref|YP_001443044.1| hypothetical protein SAHV_2454 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315492|ref|ZP_04838705.1| hypothetical protein SauraC_04967 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255007244|ref|ZP_05145845.2| hypothetical protein SauraM_12265 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794809|ref|ZP_05643788.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258407489|ref|ZP_05680632.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258422182|ref|ZP_05685094.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258439575|ref|ZP_05690321.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258442868|ref|ZP_05691428.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446431|ref|ZP_05694586.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258450452|ref|ZP_05698544.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258455171|ref|ZP_05703131.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269204103|ref|YP_003283372.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893922|ref|ZP_06302154.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117]
 gi|282926961|ref|ZP_06334586.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|295405165|ref|ZP_06814978.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819]
 gi|296276871|ref|ZP_06859378.1| hypothetical protein SauraMR_11009 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244220|ref|ZP_06928110.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|13702420|dbj|BAB43561.1| SA2258 [Staphylococcus aureus subsp. aureus N315]
 gi|14248244|dbj|BAB58632.1| similar to diaminopimelate epimerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147741976|gb|ABQ50274.1| Diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149947434|gb|ABR53370.1| diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722920|dbj|BAF79337.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788781|gb|EEV27121.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257841001|gb|EEV65452.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257841613|gb|EEV66050.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257847351|gb|EEV71353.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851989|gb|EEV75923.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854499|gb|EEV77447.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856544|gb|EEV79453.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257862382|gb|EEV85150.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262076393|gb|ACY12366.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591008|gb|EFB96082.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282763980|gb|EFC04108.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117]
 gi|285818131|gb|ADC38618.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981]
 gi|294970110|gb|EFG46128.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819]
 gi|297178998|gb|EFH38243.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|312830814|emb|CBX35656.1| diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315130888|gb|EFT86873.1| hypothetical protein CGSSa03_12295 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329723367|gb|EGG59896.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 273

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++    P   V+    H +  FV +
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKALEIIYETYVHYVIPVKQVTTEIQHLVEAFVRE 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             + +   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWSHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|34763520|ref|ZP_00144460.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886803|gb|EAA23936.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 265

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 102/289 (35%), Gaps = 50/289 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           ++   G   + CGN  R     L        ++K+++  T  G     E  D  +  D  
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSEQKNYSI-TCSGE---NEVLDVDVREDGA 111

Query: 122 EPILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--- 177
           +     K+ +P   S +++  D + +G V             G  H IF ++++      
Sbjct: 112 KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKEVSFE 161

Query: 178 --YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAAC 230
              DL         +  F     +        ++L ++ +    E G G+   +C S   
Sbjct: 162 NIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGTT 214

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A           +R   +    G L     +N+ + + G  +   EGK+
Sbjct: 215 ALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261


>gi|253730147|ref|ZP_04864312.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726124|gb|EES94853.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 273

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNGQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++    P   V+    H +  FV  
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVRK 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             +++   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|258424990|ref|ZP_05687861.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257844824|gb|EEV68867.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 273

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 43/299 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169
             V M +   +    I +     K     +     ++ PVN +      +V         
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228
           +V +  +++   + G +L               +    +  +    WE       +CGS 
Sbjct: 168 YVREQQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214

Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +  V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|298695738|gb|ADI98960.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 273

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-FFVED 173
             V M +   +    I +     K   +  +   V+++   N   + +   H +  +V +
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAI-EIIYETYVHYVIPVNQVTIEI--QHLVETYVRE 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             +++   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|242372515|ref|ZP_04818089.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1]
 gi|242349732|gb|EES41333.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 103/305 (33%), Gaps = 43/305 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +++F+K    GN  +++  +   +   + A   ++T  +   +Q+  I      + 
Sbjct: 1   MHRQVIEFSKYNPSGNMTILVHSKHHPNEYATIANQLMAT-THVCCEQVGFIESTNHNNW 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSI 116
           + +  ++    S  + CGN     + +L      +             ++  K +     
Sbjct: 60  ETYHLVM----SGNEFCGNATMSYIHYLQEHQLLQHSQCQLKVSGYSQLVPCKVHNHRCY 115

Query: 117 SVDMGEP-ILDWKLIPLARSFDKMDRDRFH-----IGPVNHLFLRNPFVVSMGNPHAIFF 170
            V M +   +  + + +A     +    +      + P   + +     V         F
Sbjct: 116 EVGMPQVQQITPRQLVIAGQLYHVLELTYESYIHFVVPTQDISVSFKKQVE-------QF 168

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAA 229
           V    ++ +  + G +L     F         +    +  +    WE       +CGS A
Sbjct: 169 VRTQRWNVNYKTIGVML-----FDTQQ--QFLQPLIYIPEVQSLIWE------NSCGSGA 215

Query: 230 CASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-FMT---GEAKKEWEGK--LDIK 282
            +  V      ++ +    V   GG +L+    N  + ++T   G+      G+  ++ +
Sbjct: 216 ASIGVFQQYRTNQASNDFKVNQPGGSILVSSTFNEQMGYLTSIKGQVSTVATGQAYIEQE 275

Query: 283 TGKWI 287
           T  ++
Sbjct: 276 TKTYL 280


>gi|294784733|ref|ZP_06750021.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294486447|gb|EFG33809.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 265

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 98/291 (33%), Gaps = 54/291 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKISEEIMKETNLYAEQVGFI-------GDNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           ++   G   + CGN  R     L       S+ K    T      +L      DG+    
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYKITCSGESSVLDVDVREDGA---- 111

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                L    +P   S +K+  D + +G V             G  H IF ++++     
Sbjct: 112 -KNKFLAKIKMPKFISLEKIKIDGYKLGLVRFS----------GISHFIFNIKEN-KEVS 159

Query: 180 LASFGNLL------AKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSA 228
             +  NL+        +  F     +        ++L ++ +    E G G+   +C S 
Sbjct: 160 FENIINLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASG 212

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             A           +R   +    G L      N+ + + G  +   EGK+
Sbjct: 213 TTALGYYLKKYKNLDR-AKIIQPNGWLE-YIIKNDEMCIDGPVEIIAEGKV 261


>gi|49484684|ref|YP_041908.1| hypothetical protein SAR2557 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423952|ref|ZP_05600381.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426635|ref|ZP_05603037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429270|ref|ZP_05605657.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257431916|ref|ZP_05608279.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434877|ref|ZP_05610928.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902383|ref|ZP_06310276.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906811|ref|ZP_06314659.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909787|ref|ZP_06317596.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912035|ref|ZP_06319831.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282915330|ref|ZP_06323107.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282921053|ref|ZP_06328771.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925959|ref|ZP_06333607.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283959250|ref|ZP_06376691.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497725|ref|ZP_06665579.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511305|ref|ZP_06670001.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293549913|ref|ZP_06672585.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295429057|ref|ZP_06821679.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589451|ref|ZP_06948092.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242813|emb|CAG41538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272970|gb|EEV05072.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276266|gb|EEV07717.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279751|gb|EEV10338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282795|gb|EEV12927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285473|gb|EEV15589.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312788|gb|EFB43192.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315468|gb|EFB45852.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321051|gb|EFB51385.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323731|gb|EFB54047.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326361|gb|EFB56665.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329710|gb|EFB59231.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596842|gb|EFC01801.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|283788842|gb|EFC27669.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918960|gb|EFD96036.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096656|gb|EFE26914.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465931|gb|EFF08461.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295126816|gb|EFG56460.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297577962|gb|EFH96675.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437110|gb|ADQ76181.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194971|gb|EFU25359.1| hypothetical protein CGSSa00_02877 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 273

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 94/295 (31%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL-FLRNPFVVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++ ++     V+    H +  +V +
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVSQVTTEIQHLVETYVRE 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             +++   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|302334095|gb|ADL24288.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 273

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 43/299 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            +  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NNFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEP-ILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIF 169
             V M +   +    I +     K     +     ++ PVN +      +V         
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHLVET------- 167

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSA 228
           FV +  ++    + G +L               +    +  +    WE       +CGS 
Sbjct: 168 FVREQQWNDKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSG 214

Query: 229 ACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +  V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 215 TASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|306821068|ref|ZP_07454686.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550904|gb|EFM38877.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 275

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 95/308 (30%), Gaps = 63/308 (20%)

Query: 4   SMVDFAKMEGIGN-KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
             ++F K+  + N  + ++D      +I  +    L    N + +Q+  +   +    + 
Sbjct: 1   MQLEFVKVNPVENMTVFILDEVEKAKHI--EIAKKLMDYSNLYAEQVGFVEKMKTDDDNI 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSF------TFETIR--GILVAKENR 112
            +R+    G   + CGN  R +   L        ++         ET     +L     +
Sbjct: 59  AVRLQMMGG---EFCGNATRSLAALLVHYDHKSIRNIGDNYYVDVETSGLEKVLRCTVQK 115

Query: 113 DGSIS----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               +    + M  P      + L    DK    R     ++H  +             +
Sbjct: 116 LDDFTYMSKIAMPLPSEMPTELLLD---DKYKLYRVDFDGISHFIID------------V 160

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI-----------ARVTSLESLDLRTWER 217
             VED    ++L         +  F     +               V + +SL    WER
Sbjct: 161 KTVEDKNQIFNLIKNYIDSENYDAF----GIMFYDFDIDYLTPLVYVKATDSLF---WER 213

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKK 273
                 +C S   A   A   ++     + +   GG L I+      V     + G+ + 
Sbjct: 214 ------SCASGTSAVGAALSYIYSKELNLDISQPGGVLSIQTRLKYGVISDINLNGKVEI 267

Query: 274 EWEGKLDI 281
              G +++
Sbjct: 268 VARGTVNV 275


>gi|213861748|ref|ZP_03386218.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 50

 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
           L     ++     T  G +V     D  + V+MGEP  +   +P 
Sbjct: 2   LKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF 46


>gi|255019199|ref|ZP_05291325.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515]
          Length = 53

 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIE 258
           T+ERGVG T ACG+A  A  +    L K      ++V   GG + + 
Sbjct: 1   TFERGVGFTNACGTAMSACSLIKKILDKDTFETPLNVYNDGGRVQVT 47


>gi|237742813|ref|ZP_04573294.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13]
 gi|229430461|gb|EEO40673.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13]
          Length = 265

 Score = 50.5 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 98/290 (33%), Gaps = 52/290 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K++  GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKIDPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT------SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           ++   G   + CGN  R     L       S+ K    T      +L      DG+    
Sbjct: 61  MM---G--GEFCGNASRSFASLLAFRDKDFSKQKNYKITCSGESSVLDVDVREDGA---- 111

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177
                L    +P   S +++  D + +G V             G  H IF ++++     
Sbjct: 112 -KNKFLAKIKMPKFISLEEIKIDGYKLGLVRFS----------GINHFIFNIKENKEVSF 160

Query: 178 ---YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW----ERGVGL-TAACGSAA 229
               DL         +  F     +        ++L ++ +    E G G+   +C S  
Sbjct: 161 ENIIDLVKKYLSNENYSAF----GIMFF---DRDNLSMKPYVYVKEVGSGVYENSCASGT 213

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            A           +R   +    G L     +N+ + + G  +   EGK+
Sbjct: 214 TALGYYLKKYKNLDR-AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261


>gi|29833535|ref|NP_828169.1| phenazine biosynthesis protein [Streptomyces avermitilis MA-4680]
 gi|29610658|dbj|BAC74704.1| putative phenazine biosynthesis protein [Streptomyces avermitilis
           MA-4680]
          Length = 272

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 29/234 (12%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDG 114
           +    D  +R      +EV  CG+        L  S        F T  G+L+A    DG
Sbjct: 55  EGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTSGTHEGPVRFATRSGVLIATPREDG 113

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           SI++D     L    IP   + + +  +                    G P+    + + 
Sbjct: 114 SITLDFPTAPLTPVEIPEGVA-EALGAEPL-------------TACDTG-PNVGDLLIEL 158

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTW--ERGVGLTAACGSAA 229
                +      L     +SE   ++ AR            R +    G+       + +
Sbjct: 159 ADEKTVRGLAPDLRALARYSERGIIATARAEDPAQGHDFVSRCFFPNVGIDEDPV--TGS 216

Query: 230 CASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + +A     +  R     +      G +  E  D+    +TG A    +G+L
Sbjct: 217 AHTALAPFWSQRLGRPDLTGLQASPRSGHVRTELRDD-RTLLTGRAVTVIDGEL 269


>gi|295704266|ref|YP_003597341.1| phenazine biosynthesis protein [Bacillus megaterium DSM 319]
 gi|294801925|gb|ADF38991.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium
           DSM 319]
          Length = 296

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 17/150 (11%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V +     D+ +++ +  ++      F++   I     A  D  IR     G E   CG
Sbjct: 24  IVFNG----DDFSAEEMQMIA--YQVQFNETAFIMKSSRA--DLRIRYFTP-GQEADLCG 74

Query: 79  NGM--RCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISVDMGEPILDWKLIPLARS 135
           +         +  +++ + +FT ET  GIL     NR+G   + M +     +  P + S
Sbjct: 75  HATVASLYALYSKNKLPKTTFTVETNAGILPMTVQNRNGQPVITMSQAS--PQFHPFSGS 132

Query: 136 FDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164
            +K+ +    HI  ++          S GN
Sbjct: 133 KEKLAKALNLHIDDLDQRLPIVYG--STGN 160


>gi|283471689|emb|CAQ50900.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 273

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       S   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEYAS-IANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     +  L      + ++          ++    +    
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVED 173
             V M +     +++P   +          I    ++    P   V+    H +  +V  
Sbjct: 115 YEVQMPQAH---RVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVETYVRK 171

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACAS 232
             +++   + G +L               +    +  +    WE       +CGS   + 
Sbjct: 172 QQWNHKYKTVGMMLFDEQR-------QFLQPLIYIPEIQSLIWE------NSCGSGTASI 218

Query: 233 VV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            V  +   +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 219 GVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|255524201|ref|ZP_05391161.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512186|gb|EET88466.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 31

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHD 28
          + F KM+G GN  +VID R    
Sbjct: 1  MKFTKMQGTGNDFIVIDDRKNSF 23


>gi|294777152|ref|ZP_06742609.1| conserved domain protein [Bacteroides vulgatus PC510]
 gi|294449021|gb|EFG17564.1| conserved domain protein [Bacteroides vulgatus PC510]
          Length = 50

 Score = 49.4 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLES 209
            G  L  HP+F E  N+    V S   
Sbjct: 4   IGPKLENHPLFPERTNIEFVEVLSHNK 30


>gi|330684131|gb|EGG95880.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU121]
          Length = 279

 Score = 49.4 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 95/304 (31%), Gaps = 53/304 (17%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIH-DFQDAS 59
           M   +++F+K    GN  +++  +    +  +   N L    +   +Q+  I  +  +  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSQHHPSDY-AKIANRLMASTHVCCEQVGFIESNNLNHG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGS 115
            D  + +     S  + CGN     + +L        ++          ++    +    
Sbjct: 60  DDCRLVM-----SGNEFCGNATMSYMHYLQEHQRLTAQQCHLNVSGCDDLVPCTIHGHQQ 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V M +                +  +  HI       ++  +   +   H +  +E+  
Sbjct: 115 YEVGMPQAQ-------------HVTTEYLHIAQHMWQAIKITYESYV---HYVIPIEEIT 158

Query: 176 YHY--DLASFGNLLAKHPMFSE-GV---NLS------IARVTSLESLDLRTWERGVGLTA 223
             +   +A F         +   G+   N+       +  +  ++SL    WE       
Sbjct: 159 ATFKQQVAQFVREQQWDEQYKTIGIMLFNVQEQYLHPLIYIPEVKSL---IWE------N 209

Query: 224 ACGSAACASVV-ASGCLHKTNRAVSVKMLGGGLLIE----WHDNNHVFMTGEAKKEWEGK 278
           +CGS A +  V  +    ++     V   GG + +       +     + G       G+
Sbjct: 210 SCGSGAASIGVFHNYQSQQSCEDYIVYQPGGSISVTSAYCSENGYRTSIKGRVSTVARGQ 269

Query: 279 LDIK 282
             I+
Sbjct: 270 AYIE 273


>gi|319891366|ref|YP_004148241.1| diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161062|gb|ADV04605.1| diaminopimelate epimerase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465461|gb|ADX77614.1| diaminopimelate epimerase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 269

 Score = 49.0 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 90/295 (30%), Gaps = 57/295 (19%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V F+K    GN  +++D +             L    +   +Q+  I D  +  +   + 
Sbjct: 4   VHFSKFNPSGNMTVLVDSQHDPSQY-RHIAQQLMKSSHVGCEQVGFIVD-DEGELPHQLV 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +     S  + CGNG    +R+L  R         T     +     D  +   + E   
Sbjct: 62  M-----SGQEFCGNGTLSFIRYLKDRN------LLTTSSFKLKVSGMDTPVHCAIHE--- 107

Query: 126 DWKLIPLARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIF--------------- 169
             +         K   +R + I  V    L   +       H +F               
Sbjct: 108 TPQQFETTLPQPKKILERQYKIDDVLFEGLEIQYDTY---QHFVFPITVWSEKLASSIES 164

Query: 170 FVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV  + +   L + G +L       ++       +  V  ++S+    WE       +CG
Sbjct: 165 FVRAEEWPEHLTAVGLMLYDTLHQRLYP------LIYVPQIDSI---IWE------QSCG 209

Query: 227 SAACAS-VVASGCLHKTNRAVSVKMLGGGLL--IEWHDNN-HVFMTGEAKKEWEG 277
           S   +  V  +      +    +   GG L   ++ +D    V + G       G
Sbjct: 210 SGTGSVGVYEAYQNQLEHLEKEIVQPGGALTAIVDHNDEGYQVAIKGNVSTVATG 264


>gi|226311358|ref|YP_002771252.1| hypothetical protein BBR47_17710 [Brevibacillus brevis NBRC 100599]
 gi|226094306|dbj|BAH42748.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 298

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGIL 106
            +        D  IR  +    E+  CG+        L +      K     FET  G++
Sbjct: 50  FLMPSDHPEADFRIRYFSP-SVEIDFCGHATVGSAWLLATERGWLEKGSRIVFETNVGLI 108

Query: 107 VAKE-NRDGSI-SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             +    DG +  V+M +     K I +  S +        +  ++  +     + S GN
Sbjct: 109 PVQLMMEDGQLQRVEMTQIRPSVKEIDVD-SEEVARLVGITLADLDDRYPMK--LASTGN 165

Query: 165 PHAIFFV 171
            H +  V
Sbjct: 166 RHLLVPV 172


>gi|269121996|ref|YP_003310173.1| phenazine biosynthesis protein PhzF family [Sebaldella termitidis
           ATCC 33386]
 gi|268615874|gb|ACZ10242.1| phenazine biosynthesis protein PhzF family [Sebaldella termitidis
           ATCC 33386]
          Length = 287

 Score = 48.2 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D++T D +   +      F++ + +   ++A  D  +R     G E+  CG+     V+ 
Sbjct: 26  DDLTEDEMQKAAGK--IGFNETVFLLASKEA--DIKMRYFTP-GHEMNLCGHATIAGVKA 80

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144
           L  +  +K  T ET+ GI+        +     G+  +  K +P      K D+ + 
Sbjct: 81  LFEKENKKIKTVETLSGIIDVNMEVQNT-----GKTFISMKQLPAQFEEFKGDKAKL 132


>gi|239932542|ref|ZP_04689495.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
 gi|291440907|ref|ZP_06580297.1| phenazine biosynthesis protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343802|gb|EFE70758.1| phenazine biosynthesis protein [Streptomyces ghanaensis ATCC 14672]
          Length = 269

 Score = 47.8 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 37/239 (15%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L +    +    F T  G+L A  + D
Sbjct: 52  PAGGEADWALRWFTPT-TEVAMCGHATLATAHVLHTTGAHKGPVRFATRSGVLAATPDED 110

Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           GS+++D     L    +P  +A +     R  F  GP     L     V + +   +  +
Sbjct: 111 GSLTLDFPTAPLTPVDLPEGVADALGAAPRTAFDTGPKIGDLL-----VEVADERTVHAL 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARV-------TSLESLDLRTWERGVGLTAA 224
             DL      S   ++A     +  +                 + +              
Sbjct: 166 RPDLKALGALSERGIIATARAENPALGYDFVSRCFFPNLGIDEDPV-------------- 211

Query: 225 CGSAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + +  + +A     +  R V   +      G +  E        ++G A    EG+L
Sbjct: 212 --TGSAHTALAPYWSERLGRPVLTGLQASPRSGRVRTEVR-GERTLLSGRAVTVIEGEL 267


>gi|294498944|ref|YP_003562644.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium QM
           B1551]
 gi|294348881|gb|ADE69210.1| phenazine biosynthesis protein, PhzF family [Bacillus megaterium QM
           B1551]
          Length = 296

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKE-N 111
           + +  D  IR     G E   CG+       +     +++ + +FT ET  GIL     N
Sbjct: 53  KSSRADLRIRYFTP-GQEADLCGHAT-VASLYALHSKNKLPKTTFTVETNAGILPMTVQN 110

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164
           R+G   + M +     +  P + S +K+ +    HI  ++          S GN
Sbjct: 111 RNGQPVITMSQAS--PQFHPFSGSKEKLAKALNLHIDDLDQRLPIVYG--STGN 160


>gi|255521954|ref|ZP_05389191.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175]
          Length = 66

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
           + F K+ G  N   ++D    H    SD   A     L    ++    D I  +    +
Sbjct: 3  TIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGIXYVTKSSE 62

Query: 58 AS 59
            
Sbjct: 63 VG 64


>gi|121608031|ref|YP_995838.1| proline racemase [Verminephrobacter eiseniae EF01-2]
 gi|121552671|gb|ABM56820.1| proline racemase [Verminephrobacter eiseniae EF01-2]
          Length = 317

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT 89
           DA  A +  +    D I+  L+    D +  A +   N  G     CG+G +  V     
Sbjct: 43  DAWRAATVLEPRGNDVIVGALLCPPVDPASAAGVIFFNNTGYLA-MCGHGTIGLVASLAY 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 LGRIAPGEHRIETPAGTVGATLHEDGSVSV 131


>gi|196035578|ref|ZP_03102982.1| phenazine biosynthesis protein PhzF family [Bacillus cereus W]
 gi|195991879|gb|EDX55843.1| phenazine biosynthesis protein PhzF family [Bacillus cereus W]
          Length = 299

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +           
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIVINENGETFIKMRQAAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|239995939|ref|ZP_04716463.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
          Length = 38

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGE 270
                  K  + V V + GG L I W   ++V  MTG 
Sbjct: 1   AIGQIQGKLGKDVRVDLPGGSLRIRWPGPDNVLKMTGP 38


>gi|255065707|ref|ZP_05317562.1| putative epimerase [Neisseria sicca ATCC 29256]
 gi|255050025|gb|EET45489.1| putative epimerase [Neisseria sicca ATCC 29256]
          Length = 321

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVA 108
           L+   +  +  A +   N  G     CG+G   +++ L    R+   + T ET  G +  
Sbjct: 67  LLCKPKSPASSAGVIFFNNSGYLG-MCGHGTIGLIKTLQHLKRIDIGTHTIETPVGDVRC 125

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + DGS+SV         + +P  R    +  D   IG +            + N H  
Sbjct: 126 TLHEDGSVSV---------RNVPSYRYRKDVSLDVEGIGSITGDIAWGGNWFFLVNDHGC 176

Query: 169 FFVEDDLYHY 178
               D+L   
Sbjct: 177 TIAPDNLEQL 186


>gi|87306830|ref|ZP_01088976.1| hypothetical protein DSM3645_00215 [Blastopirellula marina DSM
           3645]
 gi|87290203|gb|EAQ82091.1| hypothetical protein DSM3645_00215 [Blastopirellula marina DSM
           3645]
          Length = 265

 Score = 46.7 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 57/246 (23%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRD 113
                  +R       EV  CG+       FL    K  +     F T  G+L A    D
Sbjct: 52  QEESRFRLRWFTP-AVEVDLCGHATLAAAHFLWETGKAATDATIEFNTRSGVLTAVRIND 110

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
                           I L    D+++      G +  L  +    ++ G       VE 
Sbjct: 111 R---------------IELDFPIDEIEAGDPPTGLIAALGCKP---IATGRNRRDVLVE- 151

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA---------A 224
                +L S      +           +A + +   +      RG G            A
Sbjct: 152 VASEAELRSVAPDFRR-----------LAEIRARGVIVTC---RGDGENYEFLSRFFAPA 197

Query: 225 CG------SAACASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           CG      + +    + +        +T RA      GG L +   D +   + G A   
Sbjct: 198 CGIDEDPVTGSAHCALVTYWAPKWKKQTLRAFQCSQRGGELEVT-LDGDRAKLRGAAVTV 256

Query: 275 WEGKLD 280
             G+LD
Sbjct: 257 LRGELD 262


>gi|126651888|ref|ZP_01724089.1| hypothetical protein BB14905_14745 [Bacillus sp. B14905]
 gi|126591356|gb|EAZ85464.1| hypothetical protein BB14905_14745 [Bacillus sp. B14905]
          Length = 299

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106
            +    +A+ +  IR       EV  CG+        + ++     K     FE+  G++
Sbjct: 51  FLLPSTNANANYKIRYFTPT-KEVDFCGHATLGTAWLMATKYNWIDKDDKIVFESNIGLI 109

Query: 107 VAK--ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
             K     +    V M +     K I ++     +  D   I   +        + + G 
Sbjct: 110 PVKWLMENNQLTRVSMTQVRPQVKSIDIS---PAVVADLVGILETDIDDRYPIKIANTGV 166

Query: 165 PHAIFFVE 172
           PH +  V+
Sbjct: 167 PHLMVPVK 174


>gi|229122943|ref|ZP_04252151.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 95/8201]
 gi|228660527|gb|EEL16159.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 95/8201]
          Length = 299

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M    P        
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LA S      D     P+ +    N  V+
Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|255019173|ref|ZP_05291299.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515]
          Length = 72

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 4  SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQI 49
          + + F K+ G  N   ++D  G      SDA  A     L   +++    D I
Sbjct: 2  ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGI 54


>gi|30263374|ref|NP_845751.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str.
           Ames]
 gi|47528755|ref|YP_020104.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186221|ref|YP_029473.1| PhzF family phenazine biosynthesis protein [Bacillus anthracis str.
           Sterne]
 gi|165869199|ref|ZP_02213859.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0488]
 gi|167632414|ref|ZP_02390741.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0442]
 gi|167637193|ref|ZP_02395473.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0193]
 gi|170684667|ref|ZP_02875892.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0465]
 gi|170705178|ref|ZP_02895643.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0389]
 gi|177650021|ref|ZP_02933022.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0174]
 gi|190564711|ref|ZP_03017632.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813754|ref|YP_002813763.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. CDC 684]
 gi|229603005|ref|YP_002867630.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0248]
 gi|254685987|ref|ZP_05149846.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723390|ref|ZP_05185178.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A1055]
 gi|254738459|ref|ZP_05196162.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742376|ref|ZP_05200061.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Kruger B]
 gi|254752775|ref|ZP_05204811.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Vollum]
 gi|254761288|ref|ZP_05213312.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Australia 94]
 gi|30258008|gb|AAP27237.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Ames]
 gi|47503903|gb|AAT32579.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180148|gb|AAT55524.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. Sterne]
 gi|164715925|gb|EDR21442.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0488]
 gi|167514700|gb|EDR90066.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0193]
 gi|167532712|gb|EDR95348.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0442]
 gi|170130033|gb|EDS98895.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0389]
 gi|170670927|gb|EDT21665.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0465]
 gi|172083973|gb|EDT69032.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0174]
 gi|190564028|gb|EDV17992.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007870|gb|ACP17613.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. CDC 684]
 gi|229267413|gb|ACQ49050.1| phenazine biosynthesis protein, PhzF family [Bacillus anthracis
           str. A0248]
          Length = 299

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M       +    A
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            S +++         VN L +  P V  S GN    + V   + + D+     +   + +
Sbjct: 133 GSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184

Query: 193 FS 194
           F 
Sbjct: 185 FP 186


>gi|65320704|ref|ZP_00393663.1| COG0384: Predicted epimerase, PhzC/PhzF homolog [Bacillus anthracis
           str. A2012]
          Length = 299

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M       +    A
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            S +++         VN L +  P V  S GN    + V   + + D+     +   + +
Sbjct: 133 GSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184

Query: 193 FS 194
           F 
Sbjct: 185 FP 186


>gi|228928462|ref|ZP_04091502.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228831193|gb|EEM76790.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 299

 Score = 45.9 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILD---WK 128
           +G    +  L  R    ++ S T ET  GIL       EN +  I +    P        
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKIRQTAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LA S      D     P+ +    N  V+
Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|226357446|ref|YP_002787185.1| proline racemase [Deinococcus deserti VCD115]
 gi|226319436|gb|ACO47431.1| putative proline racemase [Deinococcus deserti VCD115]
          Length = 326

 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 95/299 (31%), Gaps = 47/299 (15%)

Query: 19  LVIDMRGCHDNIT-SDAINALSTDDN----------THFDQIM--LIHDFQDASVDAFIR 65
           +V+D        T ++   ALS D +             D ++  L+   +     A + 
Sbjct: 27  IVLDGFPAIPGATLAEQRQALSRDFDAWRSLINNEPRGNDVLVSALLLPPRAPDCAAGVI 86

Query: 66  IINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
             N  G  +  CG+G   +V  L    R++      +T  G++ A  + DG +SV     
Sbjct: 87  FFNNVG-PLNMCGHGTIGLVSTLAYLGRIEPGEHRIDTPVGVVSATLHEDGRVSVQNVPA 145

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR------NPFVVSMGNPHAIFFVEDDLYH 177
               + + +        R     G                  V     HA + V   L  
Sbjct: 146 YRHSQGVTVVVPGIGEVRGDVAWGGNWFFLTDSGDQDLTVANVEALTDHA-WRVRQALEA 204

Query: 178 YDL-ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC---ASV 233
             +  + G  +    +F     +S   V        R         + CG+      A +
Sbjct: 205 AGITGADGAEIDHIELFGHVDGVSRNFVLCPGKAYDR---------SPCGTGTSAKMACL 255

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-------VFMTGEAKKEWEGKLDIKTGK 285
            A G L    R V   ++G     E+    H         +TG+A    EG+L ++ G 
Sbjct: 256 AADGLLAPGQRWVQQSVIG----TEFEGQYHWHGGALCPTITGQAFITAEGELIVQPGD 310


>gi|254386020|ref|ZP_05001336.1| oxidoreductase [Streptomyces sp. Mg1]
 gi|194344881|gb|EDX25847.1| oxidoreductase [Streptomyces sp. Mg1]
          Length = 272

 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 68/240 (28%), Gaps = 39/240 (16%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L  + +      F    GIL A    D
Sbjct: 53  PPGGDADWALRWFTPT-AEVDMCGHATLATAHVLASAGLATGPVRFGARCGILTADAAED 111

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G+I++D               S          +       +R+    S    H    V +
Sbjct: 112 GAITLD------------FPTSALTQVEPAPEVSGALGAAIRSVHDTS---EHVGDLVVE 156

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-----GLTAACG-- 226
                 +      L     ++    +  A              RG      G   A G  
Sbjct: 157 LADERTVRELAPDLHALRGYARRGIIVTAPAEDRS--------RGYDFVSRGFFPAVGID 208

Query: 227 ----SAACASVVASGCLHKTNRAVSVKMLGG---GLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + +  + +A     +  R   V + GG   GL+I     +   +TG A    +G+L
Sbjct: 209 EDPVTGSAHTALAPFWAARLGRTELVGLQGGIRQGLVIVRLRGDRTLLTGHAVTVIDGEL 268


>gi|260776098|ref|ZP_05884993.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607321|gb|EEX33586.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 232

 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 80/240 (33%), Gaps = 46/240 (19%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSIS 117
           D  +R    +  EV+ CG+G   V   L  + K     S TF T+ G+L  K     +  
Sbjct: 20  DMRLRWFTPE-VEVKLCGHGTLAVAHVLKQQGKIATGDSITFNTLSGLLSVKVLS-STYE 77

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +D   P L++         + +      +  V++    +  +  + N  A+  +  D   
Sbjct: 78  LDFPAPELEYNQHCSEERLNALGLSEQQV--VSYCQFDSKELFELTNEQAVHDLSPDFSS 135

Query: 178 YDLASFGNLL--------AKHP----MFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             +   G  +        +        F+  V ++       + +               
Sbjct: 136 L-IRQPGRGIIVTAQSTQSNSDIISRYFAPWVGVN------EDPV--------------- 173

Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +    +A     K ++ V         GG L IE  ++  V ++G A    +G L I
Sbjct: 174 -TGSAHCALAEFWAGKIDKPVLTAYQASSRGGYLDIERVESGRVTLSGSAVIALKGTLFI 232


>gi|317486579|ref|ZP_07945400.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6]
 gi|316922179|gb|EFV43444.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6]
          Length = 291

 Score = 45.9 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 88/299 (29%), Gaps = 45/299 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            ++ F K    GN  +++          +     +    +   +Q   +     A+    
Sbjct: 2   RVLPFTKYSPCGNTTILVRESSLSPADRARVAAEIIAPGHLEAEQAGYV---DTAAPVPR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISV-DMG 121
           + ++       + C N  R     L               G L  +     G +SV  M 
Sbjct: 59  LDMM-----GGEFCVNATRAFAALLAEE------------GKLSPESGGLGGIVSVSGMP 101

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDL 180
           E +        A  F+          P         ++V + G  H +     D   + L
Sbjct: 102 ERLRVRVRRLAAHRFESSVLLDLPQAPPLENVAPGMYLVRVPGIAHLVL----DAAAHPL 157

Query: 181 -----ASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLR--TWERGVGLTAA---CGSAA 229
                     L A+  +  E        +      L +    W RG G T A   CGS  
Sbjct: 158 PADKDRDTAALFARFGLLGEDA-AGCIWLHREPSGLRITPFVWVRGTGTTYAETACGSGT 216

Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIE-----WHDNNHVFMTGEAKKEWEGKLDIK 282
            A+ +    ++     +S+   GG  L +      +      ++ G  ++   G + ++
Sbjct: 217 LAASIVCQGVYGDGGELSLMQPGGEPLRVVPDGAAYPGGWAAWVGGPVRRIARGDVFVE 275


>gi|255523493|ref|ZP_05390461.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296186548|ref|ZP_06854951.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7]
 gi|255512750|gb|EET89022.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296048995|gb|EFG88426.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7]
          Length = 51

 Score = 45.5 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           ++  +  V +KMLGG LLI      ++ MTGE ++  EG L 
Sbjct: 1   MNLVDEKVKIKMLGGELLIRIDAAWNIEMTGEVRQIAEGTLS 42


>gi|15596465|ref|NP_249959.1| hypothetical protein PA1268 [Pseudomonas aeruginosa PAO1]
 gi|81541513|sp|Q9I476|HYPRE_PSEAE RecName: Full=4-hydroxyproline epimerase; AltName:
           Full=Hydroxyproline-2-epimerase; Short=PaHyPRE
 gi|9947201|gb|AAG04657.1|AE004556_7 hypothetical protein PA1268 [Pseudomonas aeruginosa PAO1]
          Length = 314

 Score = 45.5 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R+       ET  G + A  + DGS+SV         + +P  R   ++  +   IG 
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 152

Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193
           V+       N F +  G        N  A       V+  L   D+    G  +    +F
Sbjct: 153 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 212

Query: 194 SE 195
           ++
Sbjct: 213 AD 214


>gi|85544193|pdb|2AZP|A Chain A, Crystal Structure Of Pa1268 Solved By Sulfur Sad
          Length = 318

 Score = 45.5 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 45  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 103

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R+       ET  G + A  + DGS+SV         + +P  R   ++  +   IG 
Sbjct: 104 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 154

Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193
           V+       N F +  G        N  A       V+  L   D+    G  +    +F
Sbjct: 155 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 214

Query: 194 SE 195
           ++
Sbjct: 215 AD 216


>gi|116049220|ref|YP_791977.1| hypothetical protein PA14_47840 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584441|gb|ABJ10456.1| putative proline racemase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 314

 Score = 45.5 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 29/182 (15%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R+       ET  G + A  + DGS+SV         + +P  R   ++  +   IG 
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRQVSVEVPGIGR 152

Query: 149 VNHLFLR--NPFVVSMG--------NPHA----IFFVEDDLYHYDLA-SFGNLLAKHPMF 193
           V+       N F +  G        N  A       V+  L   D+    G  +    +F
Sbjct: 153 VSGDIAWGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELF 212

Query: 194 SE 195
           ++
Sbjct: 213 AD 214


>gi|228947040|ref|ZP_04109336.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812614|gb|EEM58939.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 299

 Score = 45.5 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 56/152 (36%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M    P        
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LA S      D     P+ +    N  V+
Sbjct: 135 KEELAHSIGLEVNDLDVSLPIVYGNTGNWTVI 166


>gi|217960828|ref|YP_002339392.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH187]
 gi|229140031|ref|ZP_04268594.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST26]
 gi|217066483|gb|ACJ80733.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH187]
 gi|228643437|gb|EEK99705.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST26]
          Length = 299

 Score = 45.5 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 25/182 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETTFVLSSEVA--DIRMRYFTP-GFEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +    +K     
Sbjct: 75  HGTVGTIFALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKE---- 130

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            +  K +        VN L +  P V  S GN    + V   + + D+     +   + +
Sbjct: 131 FTGSKEELAHSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184

Query: 193 FS 194
           F 
Sbjct: 185 FP 186


>gi|28211908|ref|NP_782852.1| hypothetical protein CTC02312 [Clostridium tetani E88]
 gi|28204351|gb|AAO36789.1| conserved protein [Clostridium tetani E88]
          Length = 266

 Score = 45.5 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 45/276 (16%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
              +  D    L    N H +Q+  +    +      + ++   G   + CGN  R +  
Sbjct: 13  PKELYKDISKKLMQYTNIHGEQVGFLTSSNEEEKIIKLNMM---G--GEFCGNASRSLGA 67

Query: 87  FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL---IPLARSFDKM 139
            L       +K K   +E        ++  +  ++      +   K+   IP     +K+
Sbjct: 68  LLLYNNYPYIKNKEELYEVKLQCSGYEDVLNCEVTPTEVSNLFYSKIDMPIPSKIKLEKL 127

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV-- 197
           +    +    + +F    FVV       I  VE++   ++L             + G+  
Sbjct: 128 EDYEIYKVDFSGIF---HFVVD------INKVENNEKFFNLVKNTMEERYPEYDAFGIMF 178

Query: 198 -NLS------IARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
            N +      +  V + +SL    WE       +C S   A V A    +K N  + ++ 
Sbjct: 179 YNFNKNYLKPLVYVKATDSLF---WE------ESCASGTSAVVSALAYENKENICIGIRQ 229

Query: 251 LGGGLL-----IEWHDNNHVFMTGEAKKEWEGKLDI 281
            GG L      +E    + + + G  +   EG +++
Sbjct: 230 PGGELEATANYVE-SKIDKITIKGTVEIVAEGIVNV 264


>gi|50290607|ref|XP_447736.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527047|emb|CAG60683.1| unnamed protein product [Candida glabrata]
          Length = 293

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 34/252 (13%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I+  Q+   D  +RI     SE+   G+      +     + +           +V +E
Sbjct: 55  FIYKSQNPQADYKVRIFTP-VSELPFAGHPTVGTCKAYLDIVGKP-----ISGNYIVHQE 108

Query: 111 NRDGSISVDM--GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
              G + +++  G        +      D++  +   I  V H +   P ++  G    +
Sbjct: 109 CAAGLVPIEIKDGIVSFSAPRVAPTELSDEVIAEYTKI--VGHPYTHRPQMIDSGPQWVV 166

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-------ERGVGL 221
           + VED    Y++      L    + ++   + IA   S    ++R +       E  V  
Sbjct: 167 YLVEDADTCYNINPNFQNLKLLNLDNDHSGVIIAGPRSDNEWEMRAFVPVLSVPEDPV-- 224

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK-MLGGGL--------LIEWHDNNHVFMTG--E 270
              CGS A A +       +     +VK   GG L         I   +   V+  G   
Sbjct: 225 ---CGSGAAAFIGHLQQRFQYKETTNVKITQGGRLNRNGLIVGQINLDNEKPVYKIGGVP 281

Query: 271 AKKEWEGKLDIK 282
                +G + ++
Sbjct: 282 VTVV-DGTITVR 292


>gi|310659838|ref|YP_003937559.1| phenazine biosynthesis protein phzf family [Clostridium sticklandii
           DSM 519]
 gi|308826616|emb|CBH22654.1| phenazine biosynthesis protein PhzF family [Clostridium
           sticklandii]
          Length = 290

 Score = 45.1 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 29/153 (18%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     DN+T   +  ++      F +   +     A  D  +R       EV  CG
Sbjct: 22  VVLDA----DNLTEKQMQGIAKK--VGFSETAFVMSSDSA--DFRVRFFTP-SDEVDLCG 72

Query: 79  NGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP----ILDWKLI 130
           +    +  F    L  R+    +  ET+ GIL  +   DGSI ++   P    I++   I
Sbjct: 73  HAT--IATFKLLLLKGRITTGVYKQETLAGILSVEALADGSILMEQSIPEYYEIIEPSEI 130

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
             A+S   +  +     PV         VVS G
Sbjct: 131 --AKSLGLLVSELSEDYPVQ--------VVSTG 153


>gi|47564540|ref|ZP_00235585.1| phenazine biosynthesis protein PhzF family, putative [Bacillus
           cereus G9241]
 gi|47558692|gb|EAL17015.1| phenazine biosynthesis protein PhzF family, putative [Bacillus
           cereus G9241]
          Length = 299

 Score = 45.1 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 15/143 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   +   + A  D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEEMQRIAEK--VGFNETSFVLPSEVA--DIRMRYFTP-GFEMDLCGHGTVATIFA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAKEN--RDGSISVDMGEPILDWKL-----IPLARSFD 137
           L  R    ++ + T ET  GIL  +     +G   + M +  L +K        LA S  
Sbjct: 84  LRERGLLEEKNNLTIETKAGILPIQIGVKENGEAFIKMRQAALQFKEFTGSTEELAHSIG 143

Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160
               D     P+ +    N  V+
Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166


>gi|312881130|ref|ZP_07740930.1| phenazine biosynthesis protein PhzF family [Aminomonas paucivorans
           DSM 12260]
 gi|310784421|gb|EFQ24819.1| phenazine biosynthesis protein PhzF family [Aminomonas paucivorans
           DSM 12260]
          Length = 299

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILV 107
            +   + +  D  +R      +EV  CG+       +   +        +   T  G L 
Sbjct: 50  FVLPPEGSDHDVRVRFFTP-RTEVPLCGHAT-VAAHYVRAVAGGTAPGRYRQLTGAGSLP 107

Query: 108 AKENRDGS-ISVDM--GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            +  RDG    + M  G P+ +    PL     +       +G  +        VVS G
Sbjct: 108 VEILRDGEDYRIRMTQGPPVFEP---PLGEDLAEAVWGALGLGREDRGDFAPVQVVSTG 163


>gi|296110220|ref|YP_003620601.1| phenazine biosynthesis protein PhzF family [Leuconostoc kimchii
           IMSNU 11154]
 gi|295831751|gb|ADG39632.1| phenazine biosynthesis protein PhzF family [Leuconostoc kimchii
           IMSNU 11154]
          Length = 283

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 8   FAKMEGIGNKI-LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+K    GNK  LV D      ++TS    A++ +    + +   I + + A  D  +  
Sbjct: 10  FSKDNAGGNKAGLVFD----RPDLTSAQKMAIAKE--LGYAETAFITESKLA--DFRLEY 61

Query: 67  INCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
                 EV  CG+       FL  T+++ +  +T ET  GIL  K + DG + ++   P 
Sbjct: 62  FTPT-EEVPLCGHATIATFAFLNLTNKLSKSDYTIETKSGILSMKVDTDGMVFMEQKVPT 120

Query: 125 LD 126
             
Sbjct: 121 YS 122


>gi|162409762|gb|ABS82393.2| hydroxyproline-2-epimerase [Pseudomonas aeruginosa]
          Length = 314

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131


>gi|107100719|ref|ZP_01364637.1| hypothetical protein PaerPA_01001746 [Pseudomonas aeruginosa PACS2]
 gi|254234391|ref|ZP_04927714.1| hypothetical protein PACG_00238 [Pseudomonas aeruginosa C3719]
 gi|254239642|ref|ZP_04932964.1| hypothetical protein PA2G_00262 [Pseudomonas aeruginosa 2192]
 gi|296390351|ref|ZP_06879826.1| 4-hydroxyproline epimerase [Pseudomonas aeruginosa PAb1]
 gi|126166322|gb|EAZ51833.1| hypothetical protein PACG_00238 [Pseudomonas aeruginosa C3719]
 gi|126193020|gb|EAZ57083.1| hypothetical protein PA2G_00262 [Pseudomonas aeruginosa 2192]
          Length = 314

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131


>gi|70728792|ref|YP_258541.1| epimerase [Pseudomonas fluorescens Pf-5]
 gi|68343091|gb|AAY90697.1| epimerase, putative [Pseudomonas fluorescens Pf-5]
          Length = 310

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R        D        +    D ++  L+   Q     A +   N  G     CG+G
Sbjct: 33  ERLQILEREHDQWRRACVLEPRGSDVLVGALLCQPQAGDACAGVIFFNNSGYLG-MCGHG 91

Query: 81  MRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
              +VR  +   R+ +     ET  G + A  + D S+SV
Sbjct: 92  TIGLVRSLYHLGRIDQGVHRIETPVGTVEATLHEDLSVSV 131


>gi|313106252|ref|ZP_07792499.1| putative proline racemase [Pseudomonas aeruginosa 39016]
 gi|310879001|gb|EFQ37595.1| putative proline racemase [Pseudomonas aeruginosa 39016]
          Length = 314

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131


>gi|229197540|ref|ZP_04324265.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1293]
 gi|228585911|gb|EEK44004.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1293]
          Length = 282

 Score = 44.7 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 25/182 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   +    D  +R     G E+  CG
Sbjct: 7   IVLDA----DGLTEEEMQRIAEK--VGFNETTFVLSSEVG--DIRMRYFTP-GFEMDLCG 57

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +    +K     
Sbjct: 58  HGTVGTIFALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKE---- 113

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            +  K +        VN L +  P V  S GN    + V   + + D+     +   + +
Sbjct: 114 FTGSKEELAHSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 167

Query: 193 FS 194
           F 
Sbjct: 168 FP 169


>gi|237729209|ref|ZP_04559690.1| proline racemase [Citrobacter sp. 30_2]
 gi|226908938|gb|EEH94856.1| proline racemase [Citrobacter sp. 30_2]
          Length = 313

 Score = 44.7 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 13  GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCD 70
           G GN    +  R    +   D        +    D ++  L+ +       A +   N  
Sbjct: 31  GAGN----MSERRERFSRDYDDWRKAIILEPRGNDVLVGALLCEPVSPQATAGVIFFNNC 86

Query: 71  GSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           G  +  CG+G   ++  L    R++      ET  G + A  + DGS+SV+        K
Sbjct: 87  G-FLNMCGHGTIGLIASLAWLGRIQPGKHLIETPVGDVTATLHEDGSVSVENVPAYRWRK 145

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
            + +      +  D    G    L   +PF VS
Sbjct: 146 QVQVETIHGTVTGDIAWGGNWFFLVNDHPFAVS 178


>gi|294628230|ref|ZP_06706790.1| oxidoreductase [Streptomyces sp. e14]
 gi|292831563|gb|EFF89912.1| oxidoreductase [Streptomyces sp. e14]
          Length = 269

 Score = 44.4 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
              A  D  +R      +EV  CG+        L +         F T  G+L+A    D
Sbjct: 52  PGSAEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGTHTGPVRFATRSGVLIATPADD 110

Query: 114 GSISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGP 148
           GSI++D     L    +P  +A +        F  GP
Sbjct: 111 GSITLDFPTAPLTAVEVPDGVAEALGAEPLTAFDTGP 147


>gi|228934702|ref|ZP_04097535.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824954|gb|EEM70753.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 299

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A +   +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--VGFNETSFVLSSEVAHI--RMRYFTP-GYEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +           
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIVINENGETFIKMRQAAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|293606925|ref|ZP_06689272.1| possible proline racemase [Achromobacter piechaudii ATCC 43553]
 gi|292814657|gb|EFF73791.1| possible proline racemase [Achromobacter piechaudii ATCC 43553]
          Length = 337

 Score = 44.4 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG+E    C
Sbjct: 34  ILEKRAFLEQNYDWLRQALMREPRGHKDMFGVFLTPPSSPEFDAGLIYI--DGTEYSHMC 91

Query: 78  GNGMRCVVR-------FLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126
           G+G   V         F   +       FET  G++V++   +G        +     + 
Sbjct: 92  GHGTIAVSMAMVANGLFARGKDGITKIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151

Query: 127 WKLIPLARS 135
            + IP+   
Sbjct: 152 AQDIPVELP 160


>gi|225619139|ref|YP_002720365.1| phenazine biosynthesis protein PhzF family [Brachyspira
           hyodysenteriae WA1]
 gi|225213958|gb|ACN82692.1| phenazine biosynthesis protein PhzF family [Brachyspira
           hyodysenteriae WA1]
          Length = 263

 Score = 44.4 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 65/246 (26%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118
           D  +R     G E+  CG+        L + + +K  + +F+T  GIL   +N D     
Sbjct: 59  DYELRWFTP-GGEIDLCGHATLASALVLMNIIYKKLNNISFKTKSGILNVVKNNDLY--- 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +M  P  + K I +        ++     P+     R+   V                  
Sbjct: 115 EMDFPSYELKKIDVTDEM----KEAIGFKPLEAYMGRDLLCV------------------ 152

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESL--------------------DLRTWERG 218
            L +   ++          N+ I +V +L+ L                     L  +E  
Sbjct: 153 -LENEKQVIE--------ANIDIEKVKNLQGLLLHITSKGSEYDCITRSLAPKLNVYEDP 203

Query: 219 VGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           V     CGS  C  V + +  L K +         GG L   ++  N V ++G+A     
Sbjct: 204 V-----CGSGHCHVVPLWADKLGKKDIIAFQASKRGGVLYCSFN-GNRVKLSGKAVLYSS 257

Query: 277 GKLDIK 282
            ++ I+
Sbjct: 258 AEIYIQ 263


>gi|253989628|ref|YP_003040984.1| hypothetical protein PAU_02148 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781078|emb|CAQ84240.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 316

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 61/204 (29%), Gaps = 25/204 (12%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+        D      N  G     CG+G   ++  L    R+K   +  ET  G++ A
Sbjct: 69  LLCPPAAPEADIGAIFFNNAGYLG-MCGHGTMGLIASLHHLGRLKPGKYKIETPVGLVEA 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + +  +SV    P   ++        D  D +       N  FL +    S+   H  
Sbjct: 128 VLHENREVSV-HNVPSYRYQQNITVNVPDVGDVNGDIAWGGNWFFLISQHGQSLTPRHIA 186

Query: 169 ------FFVEDDLYHYDL-ASFGNLLAKHPMF-SEG-VNL-SIARVTSLESLDLRTWERG 218
                 + V   L    +    G  +    +F  +   N  +             T++R 
Sbjct: 187 ELTQYSWAVRQALEQTGITGENGECIDHIELFAPDNHANSRNFVLCPGK------TYDRS 240

Query: 219 VGLTAACGSAACASVVASGCLHKT 242
                 CG+   A +       K 
Sbjct: 241 P-----CGTGTSAKLACLAADGKL 259


>gi|225572940|ref|ZP_03781695.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039698|gb|EEG49944.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM
           10507]
          Length = 173

 Score = 44.0 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 17/161 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M    +  ++ +G G   L++D     + +    +  +    +       +++     + 
Sbjct: 30  MCDHRIKMSRYQGQGTDCLILDPNQNQELLAGKKVELIC-RRSLGIGGDSVLYGPILENG 88

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A ++I   + +  ++    +     +L                   A E +DG   V +
Sbjct: 89  KARMKIFQPECASKEAGEGKIGAFANYLVD-------------ACYFAGEPQDG---VQV 132

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
           G   +  + +     +    +    I  V  ++L   F VS
Sbjct: 133 GLLDVSLEDMEFQTDWRACGKRNREIQFVEDIYLDESFFVS 173


>gi|266619209|ref|ZP_06112144.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi
           DSM 13479]
 gi|288869260|gb|EFD01559.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi
           DSM 13479]
          Length = 317

 Score = 44.0 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 66/193 (34%), Gaps = 29/193 (15%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKE 110
            Q    D  +      G EV  CG+    +  F+      ++K+  +T ET  GIL    
Sbjct: 82  SQSELADYKLEYFTPTG-EVPLCGHAT--IAAFVVLNYFGQLKKCEYTIETKSGILSIAV 138

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              G I +    P   ++ + LA   D +D   F+              VS G    I  
Sbjct: 139 KDGGVIFMQQNTPEF-YETLELA---DVVDCLGFNADTAPGNLPVQI--VSTGLRDIIVP 192

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVN-LS---IARVTSLESLDLRTWER------GVG 220
           VE+ L    L +     A     S+  N +     + V   +   +    R      G+ 
Sbjct: 193 VENPLV---LETMVPDFAAVSKLSQKWNCVGIHAFSLVEDGKLTAVC---RNFAPLYGID 246

Query: 221 LTAACGSAACASV 233
             +A G++ CA  
Sbjct: 247 EESATGTSCCALA 259



 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 220 GLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFM 267
           G    CG A  A+ V      +  +   +++   G L I   D   +FM
Sbjct: 98  GEVPLCGHATIAAFVVLNYFGQLKKCEYTIETKSGILSIAVKDGGVIFM 146


>gi|229060976|ref|ZP_04198330.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH603]
 gi|228718345|gb|EEL69979.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH603]
          Length = 282

 Score = 44.0 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +VI+     D +T + +  ++      F++   +   + A  D  +R     G E+  CG
Sbjct: 7   VVIEA----DGLTEEEMQRIAEK--VGFNETAFVLSSEVA--DIRMRYFTP-GFEMDLCG 57

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120
           +G    +  L  R    ++ + T ET  GIL  +   N +G   + M
Sbjct: 58  HGTVGTIYALRERGLLEEKANLTIETKAGILPIQIGANENGETFIKM 104


>gi|297198200|ref|ZP_06915597.1| phenazine biosynthesis protein [Streptomyces sviceus ATCC 29083]
 gi|197714653|gb|EDY58687.1| phenazine biosynthesis protein [Streptomyces sviceus ATCC 29083]
          Length = 270

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 70/244 (28%), Gaps = 47/244 (19%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L      R    F T  G+LVA    D
Sbjct: 53  PAGGEADWALRWFTP-ATEVNMCGHATLATAHVLHGTGAHRGPVRFATRSGVLVAMPGED 111

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GSI++D     L    +P  R  + +  +                +V + +   +  +  
Sbjct: 112 GSITLDFPTAPLTPVALP-ERLAEALGAEPLTAFDTGPNI--GDLLVELADEKTVHALRP 168

Query: 174 DLYHYDLASFGNLL-----AKHPM---------FSEGVNLSIARVTSLESLDLRTWERGV 219
           DL      S   ++         +         F    N+        + +         
Sbjct: 169 DLKALGACSERGIIATARAENPDLGHDFVSRCFFP---NVG----IDEDPV--------- 212

Query: 220 GLTAACGSAACASVVA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
                  + +  + +A   +  L +T+   +      G +           +TG A    
Sbjct: 213 -------TGSAHTALAPYWAERLGRTDLTGLQTSPRSGRVRTGLR-GERTLLTGRAVTVI 264

Query: 276 EGKL 279
           EG+L
Sbjct: 265 EGEL 268


>gi|229092387|ref|ZP_04223552.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock3-42]
 gi|228690960|gb|EEL44730.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock3-42]
          Length = 299

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A +   +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +           
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETLIKMRQAAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|218892758|ref|YP_002441627.1| putative proline racemase [Pseudomonas aeruginosa LESB58]
 gi|218772986|emb|CAW28798.1| putative proline racemase [Pseudomonas aeruginosa LESB58]
          Length = 314

 Score = 44.0 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA  A    +    D ++  L+    D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRAACILEPRGSDVLVGALLCAPVDPESCAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 LGRIGPGVHRIETPVGEVEATLHEDGSVSV 131


>gi|311693926|gb|ADP96799.1| phenazine biosynthesis protein, PhzF family [marine bacterium HP15]
          Length = 267

 Score = 44.0 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 45/247 (18%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA 108
            +        D  IR     G+EV  CG+        + +++   R+     +  G L  
Sbjct: 50  FVPLPAGEDADFHIRWFTP-GTEVPLCGHATLASAWIIFNKLGWDREQIRLRSKSGPLSV 108

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--FVVSMGNPH 166
           +++ DG + +D   P L ++  P       + R+     P    F+ N   ++V + +  
Sbjct: 109 RQSDDGWLVLDF--PNLAYEKQPT----PALIREALESAPDTAFFVPNDTNYMVVLKDED 162

Query: 167 AIFFVEDDLYHY-DLASFGNLLAKHPMFSEGVNLSIARV-------TSLESLDLRTWERG 218
           A+   + DL     L + G ++      + G N                + +        
Sbjct: 163 AVRSAQPDLRKLKQLGNQGLIIT-----APGNNCDFVSRYFAPGAGIDEDPV-------- 209

Query: 219 VGLTAACGSAACASVVA---SGCLHKTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKE 274
                   + +  SV+    S  L KT      +   GG L  E    + V + G+A   
Sbjct: 210 --------TGSIHSVLVPYWSEQLGKTELEARQISARGGVLRCE-SKGDRVDIAGQAAFF 260

Query: 275 WEGKLDI 281
            EG + +
Sbjct: 261 MEGAIHL 267


>gi|89072326|ref|ZP_01158905.1| Predicted epimerase [Photobacterium sp. SKA34]
 gi|89051858|gb|EAR57310.1| Predicted epimerase [Photobacterium sp. SKA34]
          Length = 269

 Score = 44.0 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 31/224 (13%)

Query: 72  SEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           SEV+ CG+G   V   L  +       + TF T+ G L A   +  +I +D   PILD  
Sbjct: 64  SEVKLCGHGTLSVAHILKEKKLFNVNDTVTFNTLSGALTA-LIKSLAIELDFPAPILDLN 122

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
           + P       +  +  H+        +              F+E D     L    N   
Sbjct: 123 ITPSTELLASLGIEATHVIAYGIFDSK-------------IFIEVDNEEIVLNLTPNFDR 169

Query: 189 KHPMFSEGV-NLSIARVTSLESLDLRTWER------GVGLTAACGSAACA-SVVASGCLH 240
              +   GV   ++ +   L+ +      R      GV      GSA CA ++  S  L+
Sbjct: 170 LKKIDGRGVLITALTQRDDLDFIS-----RFFAPWVGVNEDPVTGSAHCALTLYWSEKLN 224

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           K         + GG +  E   N  + + G A     G + + +
Sbjct: 225 KVKLNGYQASVRGGYVSTELLPNKRIKLIGSAITTMRGTMQLPS 268


>gi|302543839|ref|ZP_07296181.1| PhzF family phenazine biosynthesis protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461457|gb|EFL24550.1| PhzF family phenazine biosynthesis protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 287

 Score = 44.0 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 19/199 (9%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D       +   A+ AL+      + +   +    +      +R  +   +EV  CG
Sbjct: 25  VVLDA----GTLDDAAMTALAAR--VGYSETAFLTAHDETRRRYRMRFFSP-RAEVAFCG 77

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138
           +        L  R       F+T  G +    + DG      G P      +P       
Sbjct: 78  HATVATAVALAERDGPGELVFDTAAGEVRVTTSTDG------GVPSATLTSVPSRTRPAD 131

Query: 139 MDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            D +           P +      P V   GN H +          DLA   + L +   
Sbjct: 132 EDTELAPALAALRWSPDDLDPALPPHVAFAGNDHLVLAAATRARLADLAYDFDALEELMR 191

Query: 193 FSEGVNLSIARVTSLESLD 211
                 + +      + LD
Sbjct: 192 RHGWTTVHLVHRPDPDRLD 210


>gi|152983543|ref|YP_001349476.1| hypothetical protein PSPA7_4122 [Pseudomonas aeruginosa PA7]
 gi|150958701|gb|ABR80726.1| hypothetical protein PSPA7_4122 [Pseudomonas aeruginosa PA7]
          Length = 314

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 33/184 (17%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           DA       +    D ++  L+ +  D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DAWRTACILEPRGSDVLVGALLCEPVDPEACAGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R+   +   ET  G + A  + DGS+SV         + +P  R    +      IG 
Sbjct: 102 LGRIGPGAHRIETPVGEVEATLHEDGSVSV---------RNVPAYRYRRAVAVQVPGIGR 152

Query: 149 VNHLFLR--NPFVVSMGNPHA--------------IFFVEDDLYHYDLA-SFGNLLAKHP 191
           V        N F +  G  HA                 V+  L   D+    G  +    
Sbjct: 153 VVGDIAWGGNWFFLVAG--HAQRIAGDNLDALTAYAVAVQQALEDQDIRGEDGGAIDHIE 210

Query: 192 MFSE 195
           +F++
Sbjct: 211 LFAD 214


>gi|330810048|ref|YP_004354510.1| proline racemase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378156|gb|AEA69506.1| putative proline racemase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 310

 Score = 43.6 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R        DA       +    D ++  L+ +  D S  A +   N  G     CG+G
Sbjct: 33  ERKQRLATEHDAWRTACVLEPRGSDVLVGALLCEPVDPSACAGVIFFNNSGYLG-MCGHG 91

Query: 81  MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118
              +V  L    R+     + ET  G + A  + D S+SV
Sbjct: 92  TIGLVASLAHLGRIGPGVHSIETPVGTVQATLHEDRSVSV 131


>gi|229134240|ref|ZP_04263056.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST196]
 gi|228649260|gb|EEL05279.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST196]
          Length = 299

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   I   + A  D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEDMQRIAEK--VGFNETSFILSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120
           L  R    ++ + T ET  GIL  +   N +G   + M
Sbjct: 84  LRERGLLEEKTNLTIETKAGILPIQIGANENGETFIKM 121


>gi|293604125|ref|ZP_06686533.1| 4-hydroxyproline epimerase [Achromobacter piechaudii ATCC 43553]
 gi|292817350|gb|EFF76423.1| 4-hydroxyproline epimerase [Achromobacter piechaudii ATCC 43553]
          Length = 310

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 43/232 (18%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT 89
           DA  A +  +    D ++  L+   Q+ +  A +   N  G     CG+G +  V     
Sbjct: 43  DAWRAATVLEPRGSDVLVGALLCAPQNPTNAAGVIFFNNAGYLG-MCGHGTIGLVATLAY 101

Query: 90  SRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
            R  +      ET  G + A  + DGS+SV         + +P  R    +  D    G 
Sbjct: 102 LRRLKPGVHGIETPVGTIRATLHEDGSVSV---------RNVPAYRLHQAVCVDVPEYGE 152

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF---------------GNLLAKHPMF 193
           V            +   HA     D+L      ++               G  +    +F
Sbjct: 153 VVGDVAWGGNWFFLVGQHAQRVAPDNLDALTHYAWAIRQALQASGVSGHDGAEIDHIELF 212

Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +   N    +              ++R       CG+   A +       K 
Sbjct: 213 APDPNADSRNFVLCPGKA------YDRSP-----CGTGTSAKLACLAADGKL 253


>gi|228916030|ref|ZP_04079603.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843625|gb|EEM88701.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 299

 Score = 43.6 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A +   +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ S T ET  GIL  +   N +G   + M +           
Sbjct: 75  HGTVGTIYALRERSLLEEKASLTIETKAGILPIQIGVNENGETLIKMRQAAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|228998160|ref|ZP_04157758.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock3-17]
 gi|228761552|gb|EEM10500.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock3-17]
          Length = 299

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           LVID  G    +T+D +  ++      F++   +     A  D  IR     G E+  CG
Sbjct: 24  LVIDAEG----LTNDEMQLIAKK--VGFNETSFVLPSNVA--DIRIRYFTP-GHEMNLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS----ISVDMGEPI---LDWK 128
           +     +  L  R     +++ T ET   +L    + D +    I +    P     D  
Sbjct: 75  HATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDIDENGESFIKMRQTAPQFQKFDGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           +  LA S      D     P+ +       ++
Sbjct: 135 IEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 166


>gi|118478683|ref|YP_895834.1| PhzF family phenazine biosynthesis protein [Bacillus thuringiensis
           str. Al Hakam]
 gi|196042605|ref|ZP_03109844.1| phenazine biosynthesis protein PhzF family [Bacillus cereus
           03BB108]
 gi|225865380|ref|YP_002750758.1| phenazine biosynthesis protein PhzF family [Bacillus cereus
           03BB102]
 gi|118417908|gb|ABK86327.1| phenazine biosynthesis protein, PhzF family [Bacillus thuringiensis
           str. Al Hakam]
 gi|196026089|gb|EDX64757.1| phenazine biosynthesis protein PhzF family [Bacillus cereus
           03BB108]
 gi|225786311|gb|ACO26528.1| phenazine biosynthesis protein PhzF family [Bacillus cereus
           03BB102]
          Length = 299

 Score = 43.6 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A +   +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ + T ET  GIL  +   N +G   + M +           
Sbjct: 75  HGTVGTIFALRERGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKDFAGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 135 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|311281085|ref|YP_003943316.1| 4-hydroxyproline epimerase [Enterobacter cloacae SCF1]
 gi|308750280|gb|ADO50032.1| 4-hydroxyproline epimerase [Enterobacter cloacae SCF1]
          Length = 315

 Score = 43.6 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R        D        +    D ++  L+ D   A   A +   N  G  +  CG+G
Sbjct: 39  ERRERFARDYDRWRKAVILEPRGSDVLVGALLCDPVSADATAGVIFFNNSG-FLNMCGHG 97

Query: 81  MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
              ++  L    R+K      ET  G + A  + DGS+ V+   P   W+ 
Sbjct: 98  TIGLIASLAWLGRIKPGKHKIETPVGDVTATLHDDGSVCVE-NVPSYRWRQ 147


>gi|283786214|ref|YP_003366079.1| hydroxyproline-2-epimerase [Citrobacter rodentium ICC168]
 gi|282949668|emb|CBG89287.1| putative hydroxyproline-2-epimerase [Citrobacter rodentium ICC168]
          Length = 313

 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R    +   D        +    D ++  L+ +       A +   N  G  +  CG+G
Sbjct: 37  GRRERFSREYDDWRKAIILEPRGNDVLVGALLCEPVSPQATAGVIFFNNSG-FLNMCGHG 95

Query: 81  MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138
              +V  L    R++      ET  G + A  + DGS+SV+        K + +  +   
Sbjct: 96  TIGLVASLAWLGRIQPGKHLIETPVGDVTATLHEDGSVSVENVPAYRWRKQVQVETACGT 155

Query: 139 MDRDRFHIGPVNHLFLRNPFVV 160
           +  D    G    L   +PF V
Sbjct: 156 VTGDIAWGGNWFFLVNDHPFAV 177


>gi|229185637|ref|ZP_04312816.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BGSC 6E1]
 gi|228597867|gb|EEK55508.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BGSC 6E1]
          Length = 282

 Score = 43.6 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      F++   +   + A +   +R     G E+  CG
Sbjct: 7   IVLDA----DGLTEEEMQRIAEK--IGFNETTFVLSSEVAHI--RMRFFTP-GFEMDLCG 57

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWK 128
           +G    +  L  R    ++ + T ET  GIL  +   N +G   + M +           
Sbjct: 58  HGTVGTIFALRERGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKDFAGS 117

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              LARS      D     P+ +    N  V+
Sbjct: 118 KEELARSIGLEVNDLDVSLPIVYGSTGNWTVI 149


>gi|15614513|ref|NP_242816.1| hypothetical protein BH1950 [Bacillus halodurans C-125]
 gi|18203174|sp|Q9KBH7|Y1950_BACHD RecName: Full=Uncharacterized isomerase BH1950
 gi|10174568|dbj|BAB05669.1| BH1950 [Bacillus halodurans C-125]
          Length = 295

 Score = 43.2 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +K    G   +V+D +G    +T      ++ +    F++            D  IR   
Sbjct: 17  SKGNPAG---IVLDGKG----LTDSDRQKIAKE--VGFNETAF--PLPSERADVNIRFFT 65

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI--LVAKENRDGSISVDMGEP 123
             G E+  CG+     +  L ++     R   T ET  GI  +    + D S+ + M + 
Sbjct: 66  P-GHEINLCGHATMATIYALKTKGLLPDRDEITIETKAGILPIRLSIDVDRSMMITMKQA 124

Query: 124 -----ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
                        LA S    ++D     PV +       ++
Sbjct: 125 APQLRAFSGSRSELAASLALEEKDLHEELPVVYGSTGTWTLL 166


>gi|254253858|ref|ZP_04947175.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
 gi|124898503|gb|EAY70346.1| Glycine/D-amino acid oxidase [Burkholderia dolosa AUO158]
          Length = 746

 Score = 43.2 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +   A   A +   N  G     CG+G   VVR L  
Sbjct: 92  DRYRTACILEPRGSDVLVGALLCEPVSADAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 151 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 180


>gi|228992108|ref|ZP_04152044.1| Phenazine biosynthesis protein PhzF [Bacillus pseudomycoides DSM
           12442]
 gi|228767837|gb|EEM16464.1| Phenazine biosynthesis protein PhzF [Bacillus pseudomycoides DSM
           12442]
          Length = 299

 Score = 43.2 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           LVID  G    +T+D +  ++      F++   +     A  D  IR     G E+  CG
Sbjct: 24  LVIDAEG----LTNDEMQLIAKK--VGFNESSFVLPSNVA--DIRIRYFTP-GHEMNLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS----ISVDMGEPI---LDWK 128
           +     +  L  R     +++ T ET   +L    + D +    I +    P     D  
Sbjct: 75  HATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDIDENGESFIKMRQTAPQFQKFDGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           +  LA S      D     P+ +       ++
Sbjct: 135 IEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 166


>gi|52142118|ref|YP_084710.1| PhzF family phenazine biosynthesis protein [Bacillus cereus E33L]
 gi|51975587|gb|AAU17137.1| possible phenazine biosynthesis protein, PhzF family [Bacillus
           cereus E33L]
          Length = 299

 Score = 43.2 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 25/182 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T + +  ++      +++   +   +    D  +R     G E+  CG
Sbjct: 24  IVLDA----DGLTEEEMQIIAEK--VGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPILDWKLIPLA 133
           +G    +  L  +    ++ + T ET  GIL  +   N +G   + M       +    A
Sbjct: 75  HGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMR--QTAPQFKDFA 132

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            S +++   R     VN L +  P V  S GN    + V   + + D+     +   + +
Sbjct: 133 GSKEEL--ARSIGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCE--RMKPNNEV 184

Query: 193 FS 194
           F 
Sbjct: 185 FP 186


>gi|330718191|ref|ZP_08312791.1| phenazine biosynthesis protein PhzF family [Leuconostoc fallax KCTC
           3537]
          Length = 283

 Score = 43.2 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRD 113
           +    D  +        EV  CG+       FL  T+++ +  +T ET  GIL  K + D
Sbjct: 51  ESKLADFRLEYFTPT-EEVPLCGHATIATFAFLNLTNKLSKSDYTIETKSGILSMKIDTD 109

Query: 114 GSISVDMGEPILD 126
           G + ++   P   
Sbjct: 110 GIVFMEQNVPTYS 122


>gi|256789027|ref|ZP_05527458.1| oxidoreductase [Streptomyces lividans TK24]
 gi|289772920|ref|ZP_06532298.1| oxidoreductase [Streptomyces lividans TK24]
 gi|289703119|gb|EFD70548.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 269

 Score = 43.2 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 69/241 (28%), Gaps = 41/241 (17%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L +    +    F T  G+LVA    D
Sbjct: 52  PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPRED 110

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GS ++D     L     P   +                L      V+  G P+    + +
Sbjct: 111 GSFTLDFPTAPLTPVEAPPGIAA--------------ALGAEPRTVLDTG-PNIGDLLVE 155

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226
                 +      L      SE   ++ AR             RG    + C     G  
Sbjct: 156 VADEETVRGLSPDLGALAAHSERGIIATARAEDPA--------RGYDYVSRCFFPNVGID 207

Query: 227 ----SAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               + +  + +A     +  R   V +      G +  E        ++G A    +G+
Sbjct: 208 EDPVTGSAHTALAPFWSERLGRPDLVGLQASSRSGRVRTELR-GGRTLLSGHAVTVIDGE 266

Query: 279 L 279
           L
Sbjct: 267 L 267


>gi|160938867|ref|ZP_02086218.1| hypothetical protein CLOBOL_03761 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437830|gb|EDP15590.1| hypothetical protein CLOBOL_03761 [Clostridium bolteae ATCC
           BAA-613]
          Length = 285

 Score = 42.8 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGN---GMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
                D  +      G EV  CG+   G   V+R L  R++++ +T ET  GIL  + ++
Sbjct: 52  DSELADFKLEYFTSVG-EVPLCGHATIGTFTVLRHL-GRLEKQEYTIETKSGILRIRVDK 109

Query: 113 DGSISVDMGEPIL 125
            G I ++   P  
Sbjct: 110 SGLIFMEQNIPEF 122


>gi|297160745|gb|ADI10457.1| hypothetical protein SBI_07337 [Streptomyces bingchenggensis BCW-1]
          Length = 282

 Score = 42.8 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 78/286 (27%), Gaps = 59/286 (20%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     D          +  + T       +        D  +RI    G E+   G
Sbjct: 27  VVFDAADLDDQAMQRLARWTNLSETT------FVLPPSTPDADYRLRIFTP-GGELPFAG 79

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD- 137
           +           +           RG  + +E   G + V  GE IL +   P  R+ + 
Sbjct: 80  HPTLGSAHAWLEQGGSP------RRGDRIVQECAAGLVEVRRGEGILSFAAPPTRRTGEL 133

Query: 138 ----------KMDRDRFHIGPVNHLFLRNPFVVS-MGNPHAIFFVEDDLYHYDLASFGNL 186
                         DR  +     +     + V  +     +  +E DL     A  G +
Sbjct: 134 EQEYLEQVVTAFGIDRDQVLAHQWVDNGPGWAVVRLATAEEVLSLEPDLSRIPTAMVGAI 193

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWE-R-GVGLTAACG------------SAACAS 232
                 +  G            + +LRT+  R GV     CG            + A  +
Sbjct: 194 ----GAYPPGA---------EHAFELRTFAPRVGVAEDPVCGSMNASVGQWLTSTGAAPA 240

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                   +  RA       G + I    +  V++ G       G 
Sbjct: 241 GYKVSQGARLGRA-------GEITITADPDGTVWVGGATTTCLRGT 279


>gi|229168140|ref|ZP_04295868.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH621]
 gi|228615384|gb|EEK72481.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH621]
          Length = 282

 Score = 42.8 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   +   + A  D  +R     G E+  CG+G    +  
Sbjct: 12  DGLTEEDMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 66

Query: 88  LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120
           L  R    ++ + T ET  GIL  +   N +G   + M
Sbjct: 67  LRERGLLEEKTNLTIETKAGILPIQIGANENGETFIKM 104


>gi|239818178|ref|YP_002947088.1| 4-hydroxyproline epimerase [Variovorax paradoxus S110]
 gi|239804755|gb|ACS21822.1| 4-hydroxyproline epimerase [Variovorax paradoxus S110]
          Length = 312

 Score = 42.8 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A +  +    D ++  L+ +       A +   N  G     CG+G   +V  L  
Sbjct: 43  DQWRAATVLEPRGSDVVVGALLCEPVSKDAAAGVVFFNNTGYLG-MCGHGTIGLVASLAH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + DGS+SV
Sbjct: 102 MGRIGTGEHRIETPVGTVTATLHADGSVSV 131


>gi|193077841|gb|ABO12717.2| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978]
          Length = 289

 Score = 42.8 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 98/293 (33%), Gaps = 57/293 (19%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +++D       +TS+ + A++   N    +   +    D+  D  +RI     SE+   G
Sbjct: 24  VIMDA----STLTSEQMQAIANWTN--LSETTFVLPAIDSQADYQVRIFTPQ-SELPFAG 76

Query: 79  NGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
           +        L      + K      +   G++    N    IS ++ +P +         
Sbjct: 77  HPTIGTAYALLEAGLIKAKEGRLVQQCAAGLVTLTVNDSNHISFELPKPKITP------- 129

Query: 135 SFDKMDRDRF-HIGPVNHLFLRNPFVVSMG---------NPHAIFFVEDDLYHY-----D 179
             D +  ++   I         N  +V +G         N  A+   + DL        D
Sbjct: 130 -LDALQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQFSLD 188

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWE--RGVGLTAACGSA--ACASVV 234
           +   G+ +                 ++    +++R++    GV     CGS   + AS +
Sbjct: 189 MKVTGSTIY-----------GFYEESNEHKRIEVRSFAPAYGVNEDPVCGSGNGSVASFI 237

Query: 235 ASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +      V +   G      G L +E H +  + ++G A    +G + +
Sbjct: 238 RYHGILPAQNDVVLSSQGQALGREGQLQLELHQDK-ILVSGAAVTCIDGTIKL 289


>gi|126642335|ref|YP_001085319.1| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978]
          Length = 264

 Score = 42.8 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 51/261 (19%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGIL 106
            +    D+  D  +RI     SE+   G+        L      + K      +   G++
Sbjct: 25  FVLPAIDSQADYQVRIFTPQ-SELPFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLV 83

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMG-- 163
               N    IS ++ +P +           D +  ++   I         N  +V +G  
Sbjct: 84  TLTVNDSNHISFELPKPKITP--------LDALQTEKLAEILKCKINTQWNAALVDVGAR 135

Query: 164 -------NPHAIFFVEDDLYHY-----DLASFGNLLAKHPMFSEGVNLSIARVTSLE-SL 210
                  N  A+   + DL        D+   G+ +                 ++    +
Sbjct: 136 WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIY-----------GFYEESNEHKRI 184

Query: 211 DLRTWE--RGVGLTAACGSA--ACASVVASGCLHKTNRAVSVKMLG------GGLLIEWH 260
           ++R++    GV     CGS   + AS +    +      V +   G      G L +E H
Sbjct: 185 EVRSFAPAYGVNEDPVCGSGNGSVASFIRYHGILPAQNDVVLSSQGQALGREGQLQLELH 244

Query: 261 DNNHVFMTGEAKKEWEGKLDI 281
            +  + ++G A    +G + +
Sbjct: 245 QDK-ILVSGAAVTCIDGTIKL 264


>gi|299143318|ref|ZP_07036398.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517803|gb|EFI41542.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 287

 Score = 42.4 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 82/251 (32%), Gaps = 51/251 (20%)

Query: 33  DAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-R 91
               A+    ++  +Q+  I    D      + ++   G   + CGN  R    +  +  
Sbjct: 31  AYAKAIMEQIDSDVEQVAFISPSYDGPP-LRMDMM---G--GEFCGNATRTYGLYAATFL 84

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
            ++     E    + V+  N+  ++  ++ E       +P A+   +       I   N+
Sbjct: 85  EEKGDVEVE----VYVSGVNKPLNVLANV-EKSYASVEVPPAKKISQ-----IEIDGRNY 134

Query: 152 LFLRNPFVVSMGNPHAIF--------FVEDDLY----HYDLASFGNLLAKHPMFSEGVNL 199
           + +        G  H I         FVE  +      +D +++G L      F     +
Sbjct: 135 MVVEFD-----GITHTIIDDKSEDKEFVERAIDIVRKEFDSSAYGILFLNEKNFEL---I 186

Query: 200 SIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLI 257
               V   +++      R G     +CGS + A+        +     V +K   G + +
Sbjct: 187 PYVYVVGSDTIF-----REG-----SCGSGSIAAGYYLNKNSQDENFKVDIKQPKGSIEV 236

Query: 258 --EWHDNNHVF 266
                ++  + 
Sbjct: 237 KARKSEDGQLL 247


>gi|308453257|ref|XP_003089365.1| hypothetical protein CRE_22218 [Caenorhabditis remanei]
 gi|308240571|gb|EFO84523.1| hypothetical protein CRE_22218 [Caenorhabditis remanei]
          Length = 321

 Score = 42.4 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRD 113
             A     +R      SEV  CG+        L + +    K   FET+ GIL  + +  
Sbjct: 60  YKACSQFSLRWFTPT-SEVPLCGHATLATSHILFNEIGNSNKELKFETLAGILAVRRDES 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKM 139
           G++ +++  P  D   I    + + +
Sbjct: 119 GNVELNL--PEYDLTSIKFHHTTNPL 142


>gi|297162158|gb|ADI11870.1| putative oxidoreductase [Streptomyces bingchenggensis BCW-1]
          Length = 275

 Score = 42.4 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 51/290 (17%)

Query: 20  VIDM-RGCHDNITSDAINALSTDDNTHFDQI------------MLIHD-FQDASVDAFIR 65
           ++D             +  L TD     D++               H   + A  D  +R
Sbjct: 5   IVDAFTDRPFAGNPAGVLLLDTDTFPDADRLQRIAAEVNLSETAFAHPLPEGAEADWALR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
                 +EV+ CG+        L +      +  F T+ G+L    +  G+I++D     
Sbjct: 65  WFTP-ATEVKMCGHATLATAHVLRTTGAATGTVRFATLSGVLSTTADDSGTITLDFPASQ 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           L    +    +    D     I  V+H     +   V + +   +  +  DL    LA  
Sbjct: 124 LTPLDVAQGAAGAAADALGVRILSVHHTTPYIDHLFVEVADETTVRTLSPDLAA--LAQT 181

Query: 184 G-------NLLAKHPM---FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           G                  F   V    A    ++   +              + +  + 
Sbjct: 182 GHRGCIVTAAAEDPARGYDFVSRV---FAPAVGIDEDPV--------------TGSAHTA 224

Query: 234 VA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +A   S  L +T          GG +       +   +TG A    +G+L
Sbjct: 225 LAPFWSARLGRTELTGFQASARGGLVRTALR-GDRTLLTGTAVTVIDGEL 273


>gi|290512712|ref|ZP_06552078.1| proline racemase [Klebsiella sp. 1_1_55]
 gi|289775053|gb|EFD83055.1| proline racemase [Klebsiella sp. 1_1_55]
          Length = 315

 Score = 42.4 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 28/224 (12%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D     +  +    D ++  L+     A   A +   N  G  +  CG+G   ++  L  
Sbjct: 49  DHWRQAAILEPRGNDVLVGALLCKPVSAEATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R++      ET  G + A  + DGS+SV         K I +  +   +  D      
Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165

Query: 149 VNHLFLRNPFVVSMGNPH------AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNL-- 199
            N  FL N    ++   H        + V + L    +    G ++    +F++      
Sbjct: 166 GNWFFLINDHPFAITPEHIPQLTAYAWAVREGLEAAGIRGDDGGVIDHIELFADDDTADS 225

Query: 200 -SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            +              W+R       CG+   A +       K 
Sbjct: 226 RNFVLCPGKA------WDRSP-----CGTGTSAKLACLAQDGKL 258


>gi|308488720|ref|XP_003106554.1| hypothetical protein CRE_15959 [Caenorhabditis remanei]
 gi|308253904|gb|EFO97856.1| hypothetical protein CRE_15959 [Caenorhabditis remanei]
          Length = 318

 Score = 42.4 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +R      +EV  CG+        L + +        FET  G+L  K+  +G   ++
Sbjct: 69  FSLRWFTPT-TEVPLCGHATLATAHVLFNEIGNSNDELKFETKSGVLTVKKGAEGL--LE 125

Query: 120 MGEPILDWKLI-------PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           M  P  D   I       PLA  F ++D   F    +  L      + S+
Sbjct: 126 MDFPKYDLNSIRFNELINPLADKFSEIDAPPFLFEVIKCLIPNKIVIESV 175


>gi|161520992|ref|YP_001584419.1| hydroxyproline-2-epimerase [Burkholderia multivorans ATCC 17616]
 gi|160345042|gb|ABX18127.1| proline racemase [Burkholderia multivorans ATCC 17616]
          Length = 310

 Score = 42.4 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 131


>gi|189352828|ref|YP_001948455.1| hydroxyproline-2-epimerase [Burkholderia multivorans ATCC 17616]
 gi|189336850|dbj|BAG45919.1| proline racemase [Burkholderia multivorans ATCC 17616]
          Length = 311

 Score = 42.4 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|221196682|ref|ZP_03569729.1| proline racemase family protein [Burkholderia multivorans CGD2M]
 gi|221203351|ref|ZP_03576370.1| proline racemase family protein [Burkholderia multivorans CGD2]
 gi|221177285|gb|EEE09713.1| proline racemase family protein [Burkholderia multivorans CGD2]
 gi|221183236|gb|EEE15636.1| proline racemase family protein [Burkholderia multivorans CGD2M]
          Length = 311

 Score = 42.4 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|78062744|ref|YP_372652.1| proline racemase [Burkholderia sp. 383]
 gi|77970629|gb|ABB12008.1| Proline racemase [Burkholderia sp. 383]
          Length = 359

 Score = 42.4 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 92  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 151 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 180


>gi|291301784|ref|YP_003513062.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571004|gb|ADD43969.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 280

 Score = 42.4 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 45/279 (16%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D  G  D +     N  +  + T       +    D   D  +RI    G E++  G
Sbjct: 25  VVLDGDGVEDEVMRRIANWTNLSETT------FVLSPNDPEADYRLRIFTP-GLELEFAG 77

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP------- 131
           +              +         G +V +E   G + +  GE  L +   P       
Sbjct: 78  HPTLGSAHAWLENGGKPK-----RAGRIV-QECAAGLVELRQGEGGLSFAAPPRRRVGEL 131

Query: 132 ----LARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNL 186
               LA   D    +R  +     +     + V  +G+   +  +E D   +  A  G +
Sbjct: 132 EAEHLAAIVDAFGIEREAVVSHQWVDNGPGWAVIRLGSAEEVLALEPDFSRFPTAMVGAV 191

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWE--RGVGLTAACGSAACASVVASGCLHKTNR 244
                 + +G     A        +LRT+    GV     CGS   +         +   
Sbjct: 192 GE----YPKGS--EFAY-------ELRTFAPASGVFEDPVCGSMNASVAQWLTGAGEMPA 238

Query: 245 AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           A  V         G + I   ++  V++ G     + G 
Sbjct: 239 AYKVSQGARLGRRGEVAIAVEEDGTVWVGGATTTCFRGT 277


>gi|288937307|ref|YP_003441366.1| 4-hydroxyproline epimerase [Klebsiella variicola At-22]
 gi|288892016|gb|ADC60334.1| 4-hydroxyproline epimerase [Klebsiella variicola At-22]
          Length = 315

 Score = 42.4 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 28/224 (12%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D     +  +    D ++  L+     A+  A +   N  G  +  CG+G   ++  L  
Sbjct: 49  DHWRQAAILEPRGNDVLVGALLCKPVSAAATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R++      ET  G + A  + DGS+SV         K I +  +   +  D      
Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165

Query: 149 VNHLFLRNPFVVSMGNPH------AIFFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNL-- 199
            N  FL N    ++   H        + V + L    +    G ++    +F++      
Sbjct: 166 GNWFFLINDHPFAITPEHIPQLTAYAWAVREGLEAAGIRGDDGGVIDHIELFADDDTADS 225

Query: 200 -SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            +              W+R       CG+   A +       K 
Sbjct: 226 RNFVLCPGKA------WDRSP-----CGTGTSAKLACLAQDGKL 258


>gi|257463928|ref|ZP_05628313.1| hypothetical protein FuD12_08764 [Fusobacterium sp. D12]
          Length = 255

 Score = 42.0 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 40/220 (18%)

Query: 74  VQSCGNGMRCVVRFLT----SRMKRKSFTFETIRG--------ILVAKENRDGSISVDMG 121
            + CGN  R    +L        K K++   T  G        +   ++       + M 
Sbjct: 58  GEFCGNASRSFAAYLAFQDEDFQKEKNYEI-TCSGYSKTLSVWVRQGEKEHQFLAKIAMP 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E IL  K   +      +   R  +  + H  L     + +     I   ++ +   +  
Sbjct: 117 E-ILSMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEI-----INVFQEYMEKEEYE 170

Query: 182 SFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +FG +     K+ M          +V  +       WE       +C     A       
Sbjct: 171 AFGLMFFEKEKYRMTP------YVQVKGISG----VWE------KSCAFGTTALGYYLRE 214

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            ++  R  +++  GG L +   +   VF+ G  K   EG+
Sbjct: 215 KYQMQR-ANIQQPGGYLEVS-LEGEQVFIDGLVKIVAEGE 252


>gi|309389128|gb|ADO77008.1| phenazine biosynthesis protein PhzF family [Halanaerobium
           praevalens DSM 2228]
          Length = 283

 Score = 42.0 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 38/229 (16%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++     D++T + +  ++      + +   I + + A  D  +R      +EV  CG
Sbjct: 23  VVLNA----DSLTKNEMLVIAKK--VGYSETAFIMNSKQA--DFKLRFFTPT-AEVDLCG 73

Query: 79  NGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           +        L     +    +  ET  GIL  K   +   SV M +   ++         
Sbjct: 74  HATIAAFNLLRDLGIISTGEYLQETKAGILKIKVKAE---SVYMEQNKAEY----FEVIN 126

Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196
               +  F     N+L      +VS G    I F++D     +L      + K       
Sbjct: 127 KAEIKACFKSETENYLGEMPIQIVSTGLKDIIVFIKDLETLLNLEPRQKKIKK------- 179

Query: 197 VNLSIARVTSLESLDLRT---WE--------R-GVGLTAACGSAACASV 233
                  V  + +  L T   +E        R G+   AA G++ CA  
Sbjct: 180 -ISEKYDVVGIHAFSLETINDFEAHARNFAPRYGIDEEAATGTSNCALA 227


>gi|317061454|ref|ZP_07925939.1| diaminopimelate epimerase [Fusobacterium sp. D12]
 gi|313687130|gb|EFS23965.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 269

 Score = 42.0 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 40/220 (18%)

Query: 74  VQSCGNGMRCVVRFLT----SRMKRKSFTFETIRG--------ILVAKENRDGSISVDMG 121
            + CGN  R    +L        K K++   T  G        +   ++       + M 
Sbjct: 72  GEFCGNASRSFAAYLAFQDEDFQKEKNYEI-TCSGYSKTLSVWVRQGEKEHQFLAKIAMP 130

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           E IL  K   +      +   R  +  + H  L     + +     I   ++ +   +  
Sbjct: 131 E-ILSMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEI-----INVFQEYMEKEEYE 184

Query: 182 SFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +FG +     K+ M          +V  +       WE       +C     A       
Sbjct: 185 AFGLMFFEKEKYRMTP------YVQVKGISG----VWE------KSCAFGTTALGYYLRE 228

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            ++  R  +++  GG L +   +   VF+ G  K   EG+
Sbjct: 229 KYQMQR-ANIQQPGGYLEVS-LEGEQVFIDGLVKIVAEGE 266


>gi|197100731|ref|NP_001124957.1| phenazine biosynthesis-like domain-containing protein [Pongo
           abelii]
 gi|75042410|sp|Q5RDZ1|PBLD_PONAB RecName: Full=Phenazine biosynthesis-like domain-containing protein
 gi|55726496|emb|CAH90016.1| hypothetical protein [Pongo abelii]
          Length = 288

 Score = 42.0 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 80/261 (30%), Gaps = 78/261 (29%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K  +   TF T+ G L A+   DG I   
Sbjct: 65  FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARRAEDGII--- 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                              +D   +   P +   + +    ++GN      V+D  Y  D
Sbjct: 121 -------------------LDFPLYPAHPQDFHEVEDLIKTAIGN----TLVQDICYSPD 157

Query: 180 LASFGNLLAKHPMFSE------GVNL-SIARVTSLESLDLRTWERGVGLTAACG------ 226
                 L+    ++         VN  ++ +V +   +       G+ LT   G      
Sbjct: 158 TRKL--LIRLSDVYDRSFLENLKVNTENLLQVENTGKVK------GLILTLK-GEPGGQT 208

Query: 227 ---------------------SAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWH 260
                                + +  +V++S       +   +        GG L I   
Sbjct: 209 QAFDFYSRYFAPWVAVAEDPVTGSAHAVLSSYWSQHLGKK-EMHAFQCSRRGGELGISLR 267

Query: 261 DNNHVFMTGEAKKEWEGKLDI 281
            +  V +TG A    EG L +
Sbjct: 268 PDGRVDITGSAAVVLEGTLTV 288


>gi|21219876|ref|NP_625655.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|13122116|emb|CAC32295.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 269

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 41/241 (17%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L +    +    F T  G+LVA    D
Sbjct: 52  PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPRED 110

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GS ++D     L     P   +                L      V+  G P+    + +
Sbjct: 111 GSFTLDFPTAPLTPVEAPPGIAA--------------ALGAEPRTVLDTG-PNIGDLLVE 155

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226
                 +      L      SE   ++ AR             RG    + C     G  
Sbjct: 156 VADEETVRGLSPDLGALAAHSERGIIATARAEDPA--------RGYDYVSRCFFPNVGID 207

Query: 227 ----SAACASVVASGCLHKTNRAVSVKM----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               + +  + +A     +  R   + +      G +  E        ++G A    +G+
Sbjct: 208 EDPVTGSAHTALAPFWSERLGRPDLIGLQASSRSGRVRTELR-GGRTLLSGHAVTVIDGE 266

Query: 279 L 279
           L
Sbjct: 267 L 267


>gi|225874816|ref|YP_002756275.1| putative proline racemase [Acidobacterium capsulatum ATCC 51196]
 gi|225793967|gb|ACO34057.1| putative proline racemase [Acidobacterium capsulatum ATCC 51196]
          Length = 315

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +  D + D  +   N  G     CG+G   V++ L    R++      +T  G + A
Sbjct: 66  LLCEPHDPACDIGVIFFNNVGYLG-MCGHGTMGVIKTLAYLGRIQPGEHRVDTPVGAVKA 124

Query: 109 KENRDGSISVD 119
               +G I+VD
Sbjct: 125 TLYENGLITVD 135


>gi|239626193|ref|ZP_04669224.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520423|gb|EEQ60289.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKE 110
            +    D  +      G EV  CG+    V  F+  R    + +  +T ET  GIL    
Sbjct: 51  SESGRADLKLEYFTPTG-EVPLCGHAT--VGTFVVLRHLHMLDKPCYTIETKSGILRVTA 107

Query: 111 NRDGSISVDMGEPIL 125
             DG I ++   P  
Sbjct: 108 GEDGLILMEQNAPRF 122


>gi|170759788|ref|YP_001787491.1| PhzF family phenazine biosynthesis protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169406777|gb|ACA55188.1| phenazine biosynthesis protein PhzF family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 289

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 19/148 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC-DGSEVQSC 77
           +V +     D+++ + +  ++      F +   +     A  D  +R     D  EV  C
Sbjct: 23  VVFNA----DDLSENEMKKIAGI--IGFSETAYVMKSNVA--DFKVRFFTPTD--EVDLC 72

Query: 78  GNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           G+    V   L    + K   +T ET  GIL  +   D S+ ++   P     +      
Sbjct: 73  GHATVAVYYLLLHLGQIKPRMYTQETKAGILKVEVKEDMSVIMNQTLPYFYETI------ 126

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
             +   D  +I            +VS G
Sbjct: 127 CKEEIADSLNITIAEIEEDLPVQIVSTG 154


>gi|325519646|gb|EGC98985.1| hydroxyproline-2-epimerase [Burkholderia sp. TJI49]
          Length = 310

 Score = 42.0 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +   A   A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVLVGALLCEPVSADAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R+       ET  G + A  + D S+SV         + +P  R    +  D    GP
Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV---------RNVPAYRHAKGVAVDVPGYGP 152

Query: 149 VNHLFLR 155
           V      
Sbjct: 153 VTGDIAW 159


>gi|302550008|ref|ZP_07302350.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
 gi|302467626|gb|EFL30719.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
          Length = 272

 Score = 42.0 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
            +    D  +R      +EV  CG+        L +    +    F T  G+LVA    D
Sbjct: 55  PEGGEADWALRWFTP-AAEVAMCGHATLATAHVLHTTGAHEGPVRFATRSGVLVATPTGD 113

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN 150
           GS+++D     L     P   + + +  +   +    
Sbjct: 114 GSVTLDFPTAPLSRVDTPDGLA-EALGAEPLTVLDTG 149


>gi|209156723|pdb|3EDN|A Chain A, Crystal Structure Of The Bacillus Anthracis Phenazine
           Biosynthesis Protein, Phzf Family
 gi|209156724|pdb|3EDN|B Chain B, Crystal Structure Of The Bacillus Anthracis Phenazine
           Biosynthesis Protein, Phzf Family
          Length = 299

 Score = 42.0 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T +    ++      F++   +   + A  D   R     G E   CG
Sbjct: 24  IVLDA----DGLTEEEXQRIAEK--VGFNETSFVLSSEVA--DIRXRYFTP-GYEXDLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILDWKLIP 131
           +G    +  L  R    ++ S T ET  GIL       EN +  I      P        
Sbjct: 75  HGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKXRQTAPQFK----D 130

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            A S +++         VN L +  P V  S GN    + V   + + D+         +
Sbjct: 131 FAGSKEELAHS--IGLEVNDLDVSLPIVYGSTGN----WTVIVPVKNLDVCERXK--PNN 182

Query: 191 PMFS 194
            +F 
Sbjct: 183 EVFP 186


>gi|167584818|ref|ZP_02377206.1| proline racemase [Burkholderia ubonensis Bu]
          Length = 310

 Score = 42.0 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R++      ET  G + A  + D S+SV
Sbjct: 102 MGRIQPGVHRIETPVGTVEATLHDDLSVSV 131


>gi|228986502|ref|ZP_04146638.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773323|gb|EEM21753.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 299

 Score = 42.0 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEEKNNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G I + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGEIFIKMRQAAPQFKEFTGSKGELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|294626160|ref|ZP_06704766.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599512|gb|EFF43643.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 312

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 14  IGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINC 69
           +G+     D+  C +   S  D   +    +    D ++  L+   +D S    +   N 
Sbjct: 26  LGDD----DLAQCRERFRSEFDHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNN 81

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
            G     CG+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 82  VGYLG-MCGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132


>gi|229012604|ref|ZP_04169778.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides DSM 2048]
 gi|228748764|gb|EEL98615.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides DSM 2048]
          Length = 282

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   +   + A  D  +R     G E+  CG+G    +  
Sbjct: 12  DGLTEEDMQRIAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 66

Query: 88  LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120
           L  R    ++ + T ET  GIL  +   N +G   + M
Sbjct: 67  LRERGLLEEKANLTIETKAGILPIQIGANENGETFIKM 104


>gi|294667545|ref|ZP_06732760.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602665|gb|EFF46101.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 312

 Score = 41.7 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 14  IGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINC 69
           +G+     D+  C +   S  D   +    +    D ++  L+   +D S    +   N 
Sbjct: 26  LGDD----DLAQCRERFRSEFDHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNN 81

Query: 70  DGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
            G     CG+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 82  VGYLG-MCGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132


>gi|89096490|ref|ZP_01169382.1| hypothetical protein B14911_12657 [Bacillus sp. NRRL B-14911]
 gi|89088505|gb|EAR67614.1| hypothetical protein B14911_12657 [Bacillus sp. NRRL B-14911]
          Length = 299

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 16/151 (10%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGIL 106
            +      + D  +R       E+  CG+        + S +      +   FET  GI+
Sbjct: 50  FLSPSGSENADFRVRYFTP-SCEIDFCGHATLSAAWIMASELDWLRHSREIRFETNIGIV 108

Query: 107 VAKENRDGS--ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV---S 161
                 +G   +S +M       ++ P  +  +    +   +  V+   +   + V    
Sbjct: 109 PVIFQTEGEKLVSAEMT------QISPKIKEIEYSLEELCQMIGVSSADIDERYPVRLGY 162

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
            GN H +  ++        +   +L+ +H  
Sbjct: 163 TGNWHLLVPLKTREAIDQASPQFDLVEEHNR 193


>gi|221212722|ref|ZP_03585699.1| proline racemase family protein [Burkholderia multivorans CGD1]
 gi|221167821|gb|EEE00291.1| proline racemase family protein [Burkholderia multivorans CGD1]
          Length = 311

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 103 MGRIGPGVHRIETPVGTVEATLHHDLSVSV 132


>gi|229018612|ref|ZP_04175466.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1273]
 gi|229024868|ref|ZP_04181299.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1272]
 gi|228736424|gb|EEL86988.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1272]
 gi|228742687|gb|EEL92833.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH1273]
          Length = 323

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   +   + A  D  +R     G E+  CG+G    +  
Sbjct: 53  DGLTEEDMQRVAEK--VGFNETSFVLSSEVA--DIRMRYFTP-GFEMDLCGHGTVGTIYA 107

Query: 88  LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142
           L  R    ++ + T ET  GIL  +   + +G   + M       + +P  + F     +
Sbjct: 108 LRERGLLEEKTNLTIETKAGILPIQIGAHENGETFIKM------RQAVPQFKGFTGSKEE 161

Query: 143 RFHIGPVNHLFLRNPFVV---SMGN 164
             H   +    L     +   S GN
Sbjct: 162 LAHSIGLEVTDLDASVPIVYGSTGN 186


>gi|206563118|ref|YP_002233881.1| hydroxyproline-2-epimerase [Burkholderia cenocepacia J2315]
 gi|198039158|emb|CAR55122.1| putative proline racemase [Burkholderia cenocepacia J2315]
          Length = 310

 Score = 41.7 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ D       A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVLVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 131


>gi|313127251|ref|YP_004037521.1| phenazine biosynthesis protein phzf family [Halogeometricum
           borinquense DSM 11551]
 gi|312293616|gb|ADQ68076.1| phenazine biosynthesis protein PhzF family [Halogeometricum
           borinquense DSM 11551]
          Length = 299

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114
             S D  +R       E+  CG+        L     +   + T ET  G+L  +   DG
Sbjct: 53  SGSADRRLRFFTPT-REIDLCGHATIATHAHLYRDGVIDAGTHTVETNVGVLDVEVEADG 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            + +    P ++   +  AR  + +  D      V       P V S G P  +  V 
Sbjct: 112 IVWMTQESPTVESVDLDYARLGEALGIDPAAFRDVGEAVP--PAVASTGLPFLVVPVN 167


>gi|83859143|ref|ZP_00952664.1| phenazine biosynthesis protein, PhzF family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852590|gb|EAP90443.1| phenazine biosynthesis protein, PhzF family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 271

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 70/240 (29%), Gaps = 33/240 (13%)

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN 111
                     +R     G EV+ CG+       +L    R+      F T+ G+L     
Sbjct: 53  KPMGEKDQWSLRWFTP-GLEVELCGHATLASAAWLFETGRVVGPEARFHTLSGLLKVSRL 111

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            DG     M  P++ ++  P       +D     +G      +     V  GN + +   
Sbjct: 112 EDGRY--QMDFPVIGYE--PGKADSAVVDA----LGGGEPEAVYEIERVH-GNRYQMLVF 162

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG----- 226
            D+     L      L      +   N+             R +    G   A G     
Sbjct: 163 ADEAAVVGLNPDIKALE-----AARTNVIATAPGRASDFVSRFF----GP--ASGVDEDP 211

Query: 227 -SAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +    +A     +  +       V    G L +    +  V + G A +  +G + +
Sbjct: 212 VTGSAHCTLAPYWFQRLEKTALKARQVGPRSGALEVRAGASGRVLLVGSALRYLDGVIRL 271


>gi|321459854|gb|EFX70903.1| hypothetical protein DAPPUDRAFT_217034 [Daphnia pulex]
          Length = 288

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 86/290 (29%), Gaps = 65/290 (22%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCV 84
            +++  +    ++ + N      + I + +  + S    +R       EV  CG+     
Sbjct: 30  ENDLPENLKRKIAAEMNLSETAFVTIENGETFEKSSKFALRWFTPT-HEVDLCGHATLAT 88

Query: 85  VRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142
              +  ++  K     F T+ GIL A +  D SI++D              +   ++  +
Sbjct: 89  AAIIFHKLGNKEKAIEFNTLSGILKAIQENDSSITLDFPLNPSSPYEAQNLKDIIRVVAN 148

Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA 202
            F I  V H       ++          + D     DL     L              + 
Sbjct: 149 NFEIQDVQHCSTTQKLLL---------RLADKYKRKDLEDLNPLTQ-----------ELL 188

Query: 203 RVTSLESLDLRTWERGVGLTA---------------A----------CGSAACASVVASG 237
              S   +       GV +T                A          CGS   A  V + 
Sbjct: 189 TCESSGVVK------GVIVTLQGNENEGYDFYSRYFAPWVGIPEDPVCGS---AHTVLAA 239

Query: 238 CLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              K       +       GG L I+      V +TG+     EGK+ IK
Sbjct: 240 YWEKVYNKDQFRARQCSKRGGDLNIKII-GQRVKLTGQVAHVLEGKIRIK 288


>gi|134101372|ref|YP_001107033.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009568|ref|ZP_06567541.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913995|emb|CAM04108.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 236

 Score = 41.3 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 72/260 (27%), Gaps = 59/260 (22%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +        D  +RI   DG E+   G+                       R   V +E
Sbjct: 7   FVLPPTTPEADYRLRIFTPDG-ELPFAGHPTLGSAHAWLENGGTP------RRDDRVVQE 59

Query: 111 NRDGSISVDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMG---- 163
              G + V  GE +L +   P  R      +   +      ++   + +   V  G    
Sbjct: 60  CGAGLVEVHRGEGVLSFAAPPTIRDGALEQEFLDEVVTAFGISRDQVLDHQWVDNGPGWA 119

Query: 164 -----NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
                    +  +E DL     A  G +      + EG              +LRT+  G
Sbjct: 120 VVRLATAQEVLALEPDLSRIPTAMVGAV----GAYPEGSPFEF---------ELRTFAPG 166

Query: 219 VG--LTAACG------------SAACAS---VVASGCLHKTNRAVSVKMLGGGLLIEWHD 261
           VG      CG            + A  +   V     L +           G + I    
Sbjct: 167 VGVAEDPVCGSMNASVGQWLTRTGAAPARYRVSQGARLGRA----------GDITITADQ 216

Query: 262 NNHVFMTGEAKKEWEGKLDI 281
           +  V++ G       G +++
Sbjct: 217 DGAVWVGGATATRIRGTINL 236


>gi|329730228|gb|EGG66618.1| phenazine biosynthesis protein, PhzF family [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 274

 Score = 41.3 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 29/126 (23%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVV-----RFLTSRMKRKSFTFETI 102
           +  + +  + S +   +    +  E++ C +  + CV      ++L     +  F+ ET+
Sbjct: 44  VGFVLNSNNPSCEYEFKYFVPN-KEMEMCVHATIACVTILKKNKYL----DKNKFSVETL 98

Query: 103 RGILVAK---ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            G+L  +   ++ D  + V  G P +  +LI      DK+D  +     VN         
Sbjct: 99  AGVLEIEIIGDDTDFKVKVKQGNPEISNQLI------DKVDIAKALNVSVNQF------- 145

Query: 160 VSMGNP 165
              GNP
Sbjct: 146 --TGNP 149


>gi|302561832|ref|ZP_07314174.1| PhzF family phenazine biosynthesis protein [Streptomyces
           griseoflavus Tu4000]
 gi|302479450|gb|EFL42543.1| PhzF family phenazine biosynthesis protein [Streptomyces
           griseoflavus Tu4000]
          Length = 229

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L +    R    F T  G+L A    D
Sbjct: 95  PAGGEADWALRWFTP-ATEVAMCGHATLATAHVLHTTGAHRGPVRFATRSGVLTATPGED 153

Query: 114 GSISVDMGEPILDWKLIPLA 133
           G++++D     L    +P  
Sbjct: 154 GTLTLDFPTARLTAVDVPEG 173


>gi|134293388|ref|YP_001117124.1| proline racemase [Burkholderia vietnamiensis G4]
 gi|134136545|gb|ABO57659.1| proline racemase [Burkholderia vietnamiensis G4]
          Length = 320

 Score = 41.3 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 53  DRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 111

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 112 MGRIGPGVHLIETPVGTVEATLHDDLSVSV 141


>gi|76817590|ref|YP_337044.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 1710b]
 gi|126444817|ref|YP_001061576.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 668]
 gi|134284204|ref|ZP_01770896.1| proline racemase family protein [Burkholderia pseudomallei 305]
 gi|226194547|ref|ZP_03790144.1| proline racemase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242311043|ref|ZP_04810060.1| proline racemase family protein [Burkholderia pseudomallei 1106b]
 gi|254264314|ref|ZP_04955179.1| proline racemase family protein [Burkholderia pseudomallei 1710a]
 gi|76582063|gb|ABA51537.1| unknown [Burkholderia pseudomallei 1710b]
 gi|126224308|gb|ABN87813.1| proline racemase family protein [Burkholderia pseudomallei 668]
 gi|134244407|gb|EBA44513.1| proline racemase family protein [Burkholderia pseudomallei 305]
 gi|225933375|gb|EEH29365.1| proline racemase family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242134282|gb|EES20685.1| proline racemase family protein [Burkholderia pseudomallei 1106b]
 gi|254215316|gb|EET04701.1| proline racemase family protein [Burkholderia pseudomallei 1710a]
          Length = 320

 Score = 41.3 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 53  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 111

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 112 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 141


>gi|229110846|ref|ZP_04240408.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock1-15]
 gi|228672556|gb|EEL27838.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock1-15]
          Length = 264

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 19  SKVGDIRMRYFTP-GFEMNLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 77

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 78  ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDESLPIVYGSTGNWTVI 131


>gi|53721367|ref|YP_110352.1| hypothetical protein BPSS0332 [Burkholderia pseudomallei K96243]
 gi|126456094|ref|YP_001074516.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei 1106a]
 gi|167818562|ref|ZP_02450242.1| proline racemase family protein [Burkholderia pseudomallei 91]
 gi|167826941|ref|ZP_02458412.1| proline racemase family protein [Burkholderia pseudomallei 9]
 gi|167848457|ref|ZP_02473965.1| proline racemase family protein [Burkholderia pseudomallei B7210]
 gi|167897009|ref|ZP_02484411.1| proline racemase family protein [Burkholderia pseudomallei 7894]
 gi|167905392|ref|ZP_02492597.1| proline racemase family protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167913686|ref|ZP_02500777.1| proline racemase family protein [Burkholderia pseudomallei 112]
 gi|167921626|ref|ZP_02508717.1| proline racemase family protein [Burkholderia pseudomallei BCC215]
 gi|217422791|ref|ZP_03454293.1| proline racemase family protein [Burkholderia pseudomallei 576]
 gi|237510248|ref|ZP_04522963.1| proline racemase family protein [Burkholderia pseudomallei MSHR346]
 gi|254182677|ref|ZP_04889270.1| proline racemase family protein [Burkholderia pseudomallei 1655]
 gi|254189353|ref|ZP_04895863.1| proline racemase family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195562|ref|ZP_04901990.1| proline racemase family protein [Burkholderia pseudomallei S13]
 gi|254299404|ref|ZP_04966853.1| proline racemase family protein [Burkholderia pseudomallei 406e]
 gi|81607366|sp|Q63NG7|HYPRE_BURPS RecName: Full=4-hydroxyproline epimerase; AltName:
           Full=Hydroxyproline-2-epimerase; Short=BpHyPRE
 gi|52211781|emb|CAH37780.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|126229862|gb|ABN93275.1| proline racemase family protein [Burkholderia pseudomallei 1106a]
 gi|154434616|gb|ABS82397.1| hydroxyproline-2-epimerase [Burkholderia pseudomallei]
 gi|157809356|gb|EDO86526.1| proline racemase family protein [Burkholderia pseudomallei 406e]
 gi|157937031|gb|EDO92701.1| proline racemase family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169652309|gb|EDS85002.1| proline racemase family protein [Burkholderia pseudomallei S13]
 gi|184213211|gb|EDU10254.1| proline racemase family protein [Burkholderia pseudomallei 1655]
 gi|217393699|gb|EEC33719.1| proline racemase family protein [Burkholderia pseudomallei 576]
 gi|235002453|gb|EEP51877.1| proline racemase family protein [Burkholderia pseudomallei MSHR346]
          Length = 310

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 43  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|53716979|ref|YP_106025.1| putative proline racemase [Burkholderia mallei ATCC 23344]
 gi|124382300|ref|YP_001025988.1| hydroxyproline-2-epimerase [Burkholderia mallei NCTC 10229]
 gi|254176002|ref|ZP_04882660.1| putative proline racemase [Burkholderia mallei ATCC 10399]
 gi|254200878|ref|ZP_04907243.1| putative proline racemase [Burkholderia mallei FMH]
 gi|52422949|gb|AAU46519.1| putative proline racemase [Burkholderia mallei ATCC 23344]
 gi|147748490|gb|EDK55565.1| putative proline racemase [Burkholderia mallei FMH]
 gi|160697044|gb|EDP87014.1| putative proline racemase [Burkholderia mallei ATCC 10399]
 gi|261826735|gb|ABN00436.2| putative proline racemase [Burkholderia mallei NCTC 10229]
          Length = 320

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 53  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 111

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 112 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 141


>gi|110667228|ref|YP_657039.1| phenazine biosynthesis protein [Haloquadratum walsbyi DSM 16790]
 gi|109624975|emb|CAJ51388.1| probable phenazine biosynthesis protein [Haloquadratum walsbyi DSM
           16790]
          Length = 317

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           + +  +   A++ +      + + I D + A      R  +   +EV  CG+       +
Sbjct: 29  EGLADNQQRAIAAE--LGASETVFITDSEVAER--RFRYFSPT-TEVDLCGHATIAAYAY 83

Query: 88  L--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145
           L  T  +   + T ET  G++    + DG  +V M +       I LA   D  D     
Sbjct: 84  LDATGEIDPGTHTVETNVGVIEITVDDDG--TVWMRQQSPTVASIDLAYD-DVADALGID 140

Query: 146 IGPVNHLFLRNPFVV-SMGNPHAIFFVEDDLYHYDLASFGNLL 187
              +  +    P  + S G P  I  V    +  D+      +
Sbjct: 141 AAALRDIGDELPLAIASTGLPFIIVPVNFLEHVGDVNPDAAAI 183


>gi|325922812|ref|ZP_08184540.1| proline racemase [Xanthomonas gardneri ATCC 19865]
 gi|325546699|gb|EGD17825.1| proline racemase [Xanthomonas gardneri ATCC 19865]
          Length = 312

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D   +    +    D ++  L+   +D S    +   N  G     CG+G   VVR L  
Sbjct: 43  DQWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-MCGHGTIGVVRTLAA 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +  +   DG++SVD
Sbjct: 102 LGRIAPGQHRIETPVGTVGVELAEDGTVSVD 132


>gi|323304731|gb|EGA58492.1| Yhi9p [Saccharomyces cerevisiae FostersB]
          Length = 291

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 15  GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN + VI+     +N ++ + + A++   N    +   +    D   D  +RI     SE
Sbjct: 17  GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 73

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
           +   G+      +      K       T   ++   +     I+++ G       +    
Sbjct: 74  LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 128

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +M  D  +   +   F++ P ++  G    +  VED    ++      +LA     
Sbjct: 129 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETGFNANPNFAMLAHQTKQ 186

Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242
           ++ V + +A      ++     +R        +E  V     CGS + A       ++K 
Sbjct: 187 NDHVGIILAGPKKEAAIKNSYEMRAFAPXINVYEDPV-----CGSGSVALARYLQEVYKF 241

Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281
            +   + +  GG L         I+   +N    ++ G A    +GK+ +
Sbjct: 242 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 291


>gi|257076211|ref|ZP_05570572.1| Proline racemase [Ferroplasma acidarmanus fer1]
          Length = 330

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 49/237 (20%)

Query: 36  NALSTDDNTHFDQIMLIH-DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR------FL 88
             L  +   H DQ   I     +   D  + I     S +  CG+    V        ++
Sbjct: 52  KILLLEPRGHKDQFGAILLPPVNPDSDYTV-IYPTTESYLDMCGHATIGVSTALVALGYV 110

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
                 K+  ++T+ G + A       + ++ GEP +   ++ +   F K  +   +   
Sbjct: 111 PFEGNEKTLVYDTVAGTVKA------MVKIENGEP-VSVSIVDVKSYFVKKIKVNVNGKN 163

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVED---DLYHY---DLASFGNLLAKH------PMFSE- 195
           V+            GN +AI   +D   D+      DL ++G ++ +        ++ E 
Sbjct: 164 VDVNISYG------GNFYAIVNSKDLGVDVEPEYIDDLLAYGKIIREKAYETLKELYPEN 217

Query: 196 GVNLS-IARVTSLESLDLRTWERGVGLTAA--------CGSAACASVVASGCLHKTN 243
             NL  +A +T     D R       +T A        CG+   A         K  
Sbjct: 218 RKNLEPLAMITDNNH-DYR-----AIVTFAGNSFDRSPCGTGTAARAAFLVHEGKLK 268


>gi|167741384|ref|ZP_02414158.1| proline racemase family protein [Burkholderia pseudomallei 14]
          Length = 310

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 43  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIGSGVHRIETPVGDVEATLHDDLSVSV 131


>gi|67643348|ref|ZP_00442095.1| proline racemase family protein [Burkholderia mallei GB8 horse 4]
 gi|126446932|ref|YP_001078080.1| hydroxyproline-2-epimerase [Burkholderia mallei NCTC 10247]
 gi|167004231|ref|ZP_02269996.1| putative proline racemase [Burkholderia mallei PRL-20]
 gi|254204844|ref|ZP_04911197.1| putative proline racemase [Burkholderia mallei JHU]
 gi|254358955|ref|ZP_04975227.1| putative proline racemase [Burkholderia mallei 2002721280]
 gi|126239786|gb|ABO02898.1| putative proline racemase [Burkholderia mallei NCTC 10247]
 gi|147754430|gb|EDK61494.1| putative proline racemase [Burkholderia mallei JHU]
 gi|148028142|gb|EDK86102.1| putative proline racemase [Burkholderia mallei 2002721280]
 gi|238524676|gb|EEP88108.1| proline racemase family protein [Burkholderia mallei GB8 horse 4]
 gi|243060392|gb|EES42578.1| putative proline racemase [Burkholderia mallei PRL-20]
          Length = 310

 Score = 40.9 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 43  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|257865736|ref|ZP_05645389.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus
           casseliflavus EC30]
 gi|257872071|ref|ZP_05651724.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus
           casseliflavus EC10]
 gi|257799670|gb|EEV28722.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus
           casseliflavus EC30]
 gi|257806235|gb|EEV35057.1| phenazine biosynthesis protein PhzC/PhzF [Enterococcus
           casseliflavus EC10]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
              +T     A++ +    F +   +   +    D           EV  CG+    +  
Sbjct: 27  EQPLTPQQKLAIAKE--LGFSETAFL--SKSPEADFRFDYFTP-KEEVDLCGHAT--IAS 79

Query: 87  FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           F      +++ ++ +  +T  G L     +DG I ++  +P+  
Sbjct: 80  FALLSYLNKLSKQQYRIDTNAGRLSITI-KDGVIFMEQNKPLFS 122


>gi|297622131|ref|YP_003710268.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377432|gb|ADI39262.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU
           86-1044]
          Length = 284

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 18/147 (12%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           VID  G +D       N L     T +     I   + A  D  +R     G E++ CG+
Sbjct: 25  VIDASGMNDKEMKHLANEL-KHSETGY-----ILPSETA--DFKLRYFTPTGDEIRFCGH 76

Query: 80  GMRCVVRFLTS------RMKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLIPL 132
                              ++K F  ET  G++  + +   G  S +   P ++ +  P 
Sbjct: 77  AT-IGAMSAMEQDGWVKHGEKKKFRAETNAGVINLEIDCTAGKPSFNFESPEVNLE--PF 133

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFV 159
             S + +D       P+     R  ++
Sbjct: 134 TVSLEPLDFPDVIASPMIETGNRYLYL 160


>gi|19743770|gb|AAL92521.1| MAWDBP [Rattus norvegicus]
          Length = 288

 Score = 40.9 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 68/237 (28%), Gaps = 51/237 (21%)

Query: 72  SEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGEPIL---- 125
           SEV  CG+        L  ++K    + TF T+ G L A+   DG +      P      
Sbjct: 74  SEVPLCGHARMASAAVLFHKIKNVNSTLTFVTLSGELKARRAEDGIVLDFPLYPTFPQDF 133

Query: 126 -DWKLIPLARSFDKMDRDRFHIGPVNHLFLR----------NPFVVSMGNPHAIFFVEDD 174
            + K +  A   D   +D  +      L +R              V+   P         
Sbjct: 134 HEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKVNT-EPLPGIEKTGK 192

Query: 175 LYHYDLASFG-------NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +    L   G               F+  V +        + +                +
Sbjct: 193 VKGLILTVKGESGGQTTPYDFYSRYFAPRVGV------PEDPV----------------T 230

Query: 228 AACASVVASGCLHKTN----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  +V++S    +      RA      GG L I    +  V M G A    EG L 
Sbjct: 231 GSAHTVLSSYWSQQVGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGMLT 287


>gi|311108024|ref|YP_003980877.1| proline racemase family protein [Achromobacter xylosoxidans A8]
 gi|310762713|gb|ADP18162.1| proline racemase family protein [Achromobacter xylosoxidans A8]
          Length = 337

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG+E    C
Sbjct: 34  ILEKRAFLEQNYDWLRKALMREPRGHKDMFGVFLTPPSSPEFDAGLIYI--DGTEYSHMC 91

Query: 78  GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126
           G+G   V   + +               FET  G++V++   +G        +     + 
Sbjct: 92  GHGTIAVSMAMVAHGLVPRGKDGITKIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151

Query: 127 WKLIPLARS 135
            + IP+   
Sbjct: 152 AQDIPVELP 160


>gi|228966300|ref|ZP_04127356.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793388|gb|EEM40935.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 299

 Score = 40.9 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      +++   +   +    D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEEMQIIAEK--IGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWKLIPLARSFD 137
           L  +    ++ + T ET  GIL  +   N++G   + M +              LA S  
Sbjct: 84  LREKGLLEEKSNLTIETKAGILPIQIGVNKNGETFIKMRQAAPQFKEFTGSKEKLAHSIG 143

Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160
               D     P+ +    N  V+
Sbjct: 144 LEINDLDVSLPIVYGSTGNWTVI 166


>gi|163839671|ref|YP_001624076.1| MFS transporter [Renibacterium salmoninarum ATCC 33209]
 gi|162953147|gb|ABY22662.1| MFS transporter [Renibacterium salmoninarum ATCC 33209]
          Length = 737

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 21/211 (9%)

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDWKLIPLARS 135
           CG+        L  R    S+ F+T  G +  + ++ G SI+       ++ K   ++  
Sbjct: 531 CGHATVATAVALAERYGVGSYLFDTKSGEIKLETSQHGDSITASFT--SVEPKGTEISAE 588

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                 +   +   +      P +   GNPH +  + +DL  +D   F   L +  M  +
Sbjct: 589 VLATLLELLGLTAADLRVDYPPRIAYAGNPHPVLVISEDLI-FDSFEFDPALIRQLMDQQ 647

Query: 196 GV--NLSIARVTSLESLDLR----TWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248
           G    +++ R+ + ++ + R        GV     A GSAA +       L        V
Sbjct: 648 GWPGTITVLRLLNAQTFEARNLFPV---GVITEDPATGSAAASVGAYLRALGLVQTPTQV 704

Query: 249 KMLGGG-------LLIEWHDNNHVFMTGEAK 272
           ++  G        L ++  ++  + +TG A 
Sbjct: 705 QIQQGRHVGRPSILEVDIPEHGGITVTGSAT 735


>gi|75760476|ref|ZP_00740515.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218898478|ref|YP_002446889.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus G9842]
 gi|228901897|ref|ZP_04066065.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL
           4222]
 gi|74492037|gb|EAO55214.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544254|gb|ACK96648.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus G9842]
 gi|228857749|gb|EEN02241.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL
           4222]
          Length = 299

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           ++G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 KNGETFIKMRQAAPQFKEFTGSKEKLAHSIGLEINDLDVSLPIVYGSTGNWTVI 166


>gi|83718189|ref|YP_440255.1| hydroxyproline-2-epimerase [Burkholderia thailandensis E264]
 gi|257140883|ref|ZP_05589145.1| hydroxyproline-2-epimerase [Burkholderia thailandensis E264]
 gi|83652014|gb|ABC36078.1| proline racemase, putative [Burkholderia thailandensis E264]
          Length = 310

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 28  DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75
           D   ++ + AL+ D +             D ++  L+ +   A   A +   N  G    
Sbjct: 28  DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86

Query: 76  SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            CG+G   +VR L    R+       ET  G + A  + D S+SV
Sbjct: 87  MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|77465520|ref|YP_355023.1| putative proline racemase [Rhodobacter sphaeroides 2.4.1]
 gi|221369524|ref|YP_002520620.1| Proline racemase [Rhodobacter sphaeroides KD131]
 gi|77389938|gb|ABA81122.1| putative proline racemase [Rhodobacter sphaeroides 2.4.1]
 gi|221162576|gb|ACM03547.1| Proline racemase [Rhodobacter sphaeroides KD131]
          Length = 337

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG E    C
Sbjct: 34  ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91

Query: 78  GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDG 114
           G+G   V                     FET  G++VA+   +G
Sbjct: 92  GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEG 135


>gi|269124816|ref|YP_003298186.1| phenazine biosynthesis protein PhzF family [Thermomonospora curvata
           DSM 43183]
 gi|268309774|gb|ACY96148.1| phenazine biosynthesis protein PhzF family [Thermomonospora curvata
           DSM 43183]
          Length = 287

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 19/235 (8%)

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG--ILVAKEN 111
                     +R    + +EV  CG+        L  R+      F T  G   +  ++ 
Sbjct: 56  PPDGPGRSFTVRYFAPE-TEVPFCGHATVAAAVALAERIGPGPLEFATRSGPVPVEVEQE 114

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            DG++   +       + +P       +     H  P        P +   G  H +   
Sbjct: 115 ADGTLRATLTSVEPYVEQVPDQDVSQALAA--LHWRPDELDPALPPRIAFAGARHLVLAA 172

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR----TWERGVGLTAACGS 227
                   L    + L       +   L +    S     +R        GV    A GS
Sbjct: 173 ATRARLAALDYDFDALRAFMTARDLTTLHLVWRESKHVFHVRDPFPV--GGVREDPATGS 230

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGG-------LLIEWHDNN-HVFMTGEAKKE 274
           AA A       L   +   +V +  G        L ++ H+ +  V ++G A + 
Sbjct: 231 AAAAFGAYLRELGLVDATATVTLHQGQDMGRPALLRVDLHEGDRRVRVSGTAVRI 285


>gi|167616960|ref|ZP_02385591.1| proline racemase, putative [Burkholderia thailandensis Bt4]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 28  DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75
           D   ++ + AL+ D +             D ++  L+ +   A   A +   N  G    
Sbjct: 28  DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86

Query: 76  SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            CG+G   +VR L    R+       ET  G + A  + D S+SV
Sbjct: 87  MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|84624640|ref|YP_452012.1| hypothetical protein XOO_2983 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368580|dbj|BAE69738.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 312

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 22  DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77
           D+  C D   S  D   +    +    D ++  L+   +D S    +   N  G     C
Sbjct: 30  DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 88

Query: 78  GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           G+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 89  GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 132


>gi|323337263|gb|EGA78516.1| Yhi9p [Saccharomyces cerevisiae Vin13]
 gi|323348355|gb|EGA82603.1| Yhi9p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 291

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 15  GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN + VI+     +N ++ + + A++   N    +   +    D   D  +RI     SE
Sbjct: 17  GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 73

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
           +   G+      +      K       T   ++   +     I+++ G       +    
Sbjct: 74  LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 128

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +M  D  +   +   F++ P ++  G    +  VED    ++      +LA     
Sbjct: 129 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 186

Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242
           ++ V + +A      ++     +R        +E  V     CGS + A       ++K 
Sbjct: 187 NDHVGIILAGPKKEAAIKNSYEMRAFAPMINVYEDPV-----CGSGSVALARYLQEVYKF 241

Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281
            +   + +  GG L         I+   +N    ++ G A    +GK+ +
Sbjct: 242 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 291


>gi|151943973|gb|EDN62266.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190405814|gb|EDV09081.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207344744|gb|EDZ71783.1| YHR029Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270606|gb|EEU05780.1| Yhi9p [Saccharomyces cerevisiae JAY291]
 gi|259147058|emb|CAY80313.1| Yhi9p [Saccharomyces cerevisiae EC1118]
          Length = 294

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 15  GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN + VI+     +N ++ + + A++   N    +   +    D   D  +RI     SE
Sbjct: 20  GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
           +   G+      +      K       T   ++   +     I+++ G       +    
Sbjct: 77  LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +M  D  +   +   F++ P ++  G    +  VED    ++      +LA     
Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189

Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242
           ++ V + +A      ++     +R        +E  V     CGS + A       ++K 
Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPMINVYEDPV-----CGSGSVALARYLQEVYKF 244

Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281
            +   + +  GG L         I+   +N    ++ G A    +GK+ +
Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294


>gi|73535699|pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The
           Phenazine Biosynthesis Phzf Enzyme Superfamily
          Length = 300

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 15  GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN + VI+     +N ++ + + A++   N    +   +    D   D  +RI     SE
Sbjct: 20  GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
           +   G+      +      K       T   ++   +     I+++ G       +    
Sbjct: 77  LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +M  D  +   +   F++ P ++  G    +  VED    ++      +LA     
Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189

Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242
           ++ V + +A      ++     +R        +E  V     CGS + A       ++K 
Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPV-----CGSGSVALARYLQEVYKF 244

Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281
            +   + +  GG L         I+   +N    ++ G A    +GK+ +
Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294


>gi|6321818|ref|NP_011894.1| Yhi9p [Saccharomyces cerevisiae S288c]
 gi|731643|sp|P38765|YHI9_YEAST RecName: Full=Uncharacterized isomerase YHI9
 gi|500699|gb|AAB68880.1| Yhr029cp [Saccharomyces cerevisiae]
 gi|45269543|gb|AAS56152.1| YHR029C [Saccharomyces cerevisiae]
 gi|285809933|tpg|DAA06720.1| TPA: Yhi9p [Saccharomyces cerevisiae S288c]
          Length = 294

 Score = 40.5 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 101/290 (34%), Gaps = 38/290 (13%)

Query: 15  GNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN + VI+     +N ++ + + A++   N    +   +    D   D  +RI     SE
Sbjct: 20  GNPVAVINFLEIDENEVSQEELQAIANWTN--LSETTFLFKPSDKKYDYKLRIFTP-RSE 76

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
           +   G+      +      K       T   ++   +     I+++ G       +    
Sbjct: 77  LPFAGHPTIGSCKAFLEFTKNT-----TATSLVQECKIGAVPITINEGLISFKAPMADYE 131

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               +M  D  +   +   F++ P ++  G    +  VED    ++      +LA     
Sbjct: 132 SISSEMIAD--YEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQ 189

Query: 194 SEGVNLSIARVTSLESLD----LR-------TWERGVGLTAACGSAACASVVASGCLHKT 242
           ++ V + +A      ++     +R        +E  V     CGS + A       ++K 
Sbjct: 190 NDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPV-----CGSGSVALARYLQEVYKF 244

Query: 243 NRAVSVKM-LGGGLL--------IEWHDNNHV--FMTGEAKKEWEGKLDI 281
            +   + +  GG L         I+   +N    ++ G A    +GK+ +
Sbjct: 245 EKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294


>gi|172063061|ref|YP_001810712.1| proline racemase [Burkholderia ambifaria MC40-6]
 gi|171995578|gb|ACB66496.1| proline racemase [Burkholderia ambifaria MC40-6]
          Length = 311

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R++      ET  G + A  + D S+SV
Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|171321875|ref|ZP_02910772.1| proline racemase [Burkholderia ambifaria MEX-5]
 gi|171092835|gb|EDT38098.1| proline racemase [Burkholderia ambifaria MEX-5]
          Length = 311

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +       A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R++      ET  G + A  + D S+SV
Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|170735763|ref|YP_001777023.1| proline racemase [Burkholderia cenocepacia MC0-3]
 gi|169817951|gb|ACA92533.1| proline racemase [Burkholderia cenocepacia MC0-3]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ D       A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIAPGVHRIETPVGTVEATLHDDLSVSV 131


>gi|167578866|ref|ZP_02371740.1| proline racemase, putative [Burkholderia thailandensis TXDOH]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 28  DNITSDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQ 75
           D   ++ + AL+ D +             D ++  L+ +   A   A +   N  G    
Sbjct: 28  DGPMAERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG- 86

Query: 76  SCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
            CG+G   +VR L    R+       ET  G + A  + D S+SV
Sbjct: 87  MCGHGTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|332561178|ref|ZP_08415496.1| proline racemase [Rhodobacter sphaeroides WS8N]
 gi|332274976|gb|EGJ20292.1| proline racemase [Rhodobacter sphaeroides WS8N]
          Length = 337

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG E    C
Sbjct: 34  ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91

Query: 78  GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDG 114
           G+G   V                     FET  G++VA+   +G
Sbjct: 92  GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEG 135


>gi|220905239|ref|YP_002480551.1| hypothetical protein Ddes_1977 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869538|gb|ACL49873.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 283

 Score = 40.5 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIE-WHDNNHVF--MTGEAKKEWEGKL 279
           ACGS A A  ++    +   +  S+   GG  L +  + ++      + G      +G++
Sbjct: 218 ACGSGALALALSRAKSNG-GKHFSIMQPGGSPLEVRLFSEDGTAMAGINGPVALVADGQV 276

Query: 280 DIKTG 284
            +  G
Sbjct: 277 WLPGG 281


>gi|323965468|gb|EGB60923.1| proline racemase [Escherichia coli M863]
          Length = 315

 Score = 40.5 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +       A +   N  G  +  CG+G   +V  L    R+K      ET  G + A
Sbjct: 69  LLCEPLSPHATAGVIFFNNAG-YLNMCGHGTIGLVASLAWLGRIKPGVHRIETPVGDVNA 127

Query: 109 KENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
             + DGS+SV+   P   W K + +  +   +  D       N  FL N     +  P  
Sbjct: 128 TLHDDGSVSVE-NVPAWRWQKQVSVETAVGTVTGD--IAWGGNWFFLINDHPFDI-VPEQ 183

Query: 168 I-------FFVEDDLYHY-DLASFGNLLAKHPMFSE 195
           I       + V + L +   +   G ++    +F++
Sbjct: 184 IPQLTEYAWAVREGLDNAGIVGENGGIIDHIELFAD 219


>gi|228940487|ref|ZP_04103055.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973402|ref|ZP_04133989.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979966|ref|ZP_04140284.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis Bt407]
 gi|228779722|gb|EEM27971.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis Bt407]
 gi|228786319|gb|EEM34311.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819188|gb|EEM65245.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941123|gb|AEA17019.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      +++   +   +    D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEEMQIIAEK--IGYNETTFVLSSEVG--DIRMRYFTP-GFEMDLCGHGTVGTIYA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDM--GEPILD---WKLIPLARSFD 137
           L  +    ++ + T ET  GIL  +   N +G   + M    P           LA S  
Sbjct: 84  LREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIG 143

Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160
               D     P+ +    N  V+
Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166


>gi|166711629|ref|ZP_02242836.1| hypothetical protein Xoryp_09245 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 312

 Score = 40.5 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 22  DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77
           D+  C D   S  D   +    +    D ++  L+   +D S    +   N  G     C
Sbjct: 30  DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 88

Query: 78  GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           G+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 89  GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 132


>gi|153803331|ref|ZP_01957917.1| phenazine biosynthesis protein PhzF family [Vibrio cholerae MZO-3]
 gi|124121115|gb|EAY39858.1| phenazine biosynthesis protein PhzF family [Vibrio cholerae MZO-3]
          Length = 227

 Score = 40.5 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 18/215 (8%)

Query: 73  EVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           EV  CG+G   V   L  +          F+T+ GIL A  + + SI +    P+LD ++
Sbjct: 24  EVSLCGHGTLAVAHILKEQGGYKTGDVLEFKTLSGILTAHLDEN-SIHLVFPTPMLDMQV 82

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGNLLA 188
            P     + +   + ++        +   V+ + N   +  +  D      L   G L+ 
Sbjct: 83  SPNIGMLNCLGLAQSNLIAYGQFDTKQIIVIVIDNESLLNDLSPDFSGLSKLKGRGVLVT 142

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVVASGCLHKTN-RAV 246
                    ++                  GV      GSA CA  V  S  L K   +  
Sbjct: 143 A----KSDSDVDFV----SRYFAPWV---GVNEDPVTGSAHCALCVYWSKRLGKFQLKGY 191

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                GG + +E  + N V ++G+A     G++ I
Sbjct: 192 QASKRGGFVDVELLNPNQVKLSGQAVTVLSGRMKI 226


>gi|30021522|ref|NP_833153.1| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579]
 gi|229128695|ref|ZP_04257673.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-Cer4]
 gi|29897077|gb|AAP10354.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579]
 gi|228654888|gb|EEL10748.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-Cer4]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI----LVAK 109
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GI    +V  
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIVVN 112

Query: 110 ENRDGSISVDMGEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           EN +  I +    P           LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|327250276|gb|EGE61995.1| proline racemase family protein [Escherichia coli STEC_7v]
          Length = 292

 Score = 40.5 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +       A +   N  G  +  CG+G   +V  L    R+K      ET  G + A
Sbjct: 46  LLCEPLSPHATAGVIFFNNAG-YLNMCGHGTIGLVASLAWLGRIKPGVHRIETPVGDVNA 104

Query: 109 KENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
             + DGS+SV+   P   W K + +  +   +  D       N  FL N     +  P  
Sbjct: 105 TLHDDGSVSVE-NVPAWRWQKQVSVETAVGTVTGD--IAWGGNWFFLINDHPFDI-VPEQ 160

Query: 168 I-------FFVEDDLYHY-DLASFGNLLAKHPMFSE 195
           I       + V + L +   +   G ++    +F++
Sbjct: 161 IPQLTEYAWAVREGLDNAGIVGENGGIIDHIELFAD 196


>gi|37526156|ref|NP_929500.1| hypothetical protein plu2243 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785586|emb|CAE14536.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 320

 Score = 40.5 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
           L+        D  +   N  G     CG+G   ++  L          +  ET  G++ A
Sbjct: 73  LLCPPAVPDADMGVIFFNNAGYLG-MCGHGTMGLIASLHHLGWLTPSKYKIETPVGMVEA 131

Query: 109 KENRDGSISV 118
             ++DG++SV
Sbjct: 132 VLHQDGAVSV 141


>gi|107026574|ref|YP_624085.1| proline racemase [Burkholderia cenocepacia AU 1054]
 gi|116692236|ref|YP_837769.1| proline racemase [Burkholderia cenocepacia HI2424]
 gi|105895948|gb|ABF79112.1| proline racemase [Burkholderia cenocepacia AU 1054]
 gi|116650236|gb|ABK10876.1| proline racemase [Burkholderia cenocepacia HI2424]
          Length = 359

 Score = 40.5 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ D       A +   N  G     CG+G   VVR L  
Sbjct: 92  DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 150

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R++      ET  G + A  + D S+SV         + +P  R    +  D    GP
Sbjct: 151 MGRIEPGVHRIETPVGTVEATLHDDLSVSV---------RNVPAYRHAQGVVLDVPGYGP 201

Query: 149 VNHLFLR 155
           V      
Sbjct: 202 VKGDIAW 208


>gi|260555491|ref|ZP_05827712.1| proline racemase [Acinetobacter baumannii ATCC 19606]
 gi|260412033|gb|EEX05330.1| proline racemase [Acinetobacter baumannii ATCC 19606]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 72/256 (28%), Gaps = 51/256 (19%)

Query: 13  GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68
           G G      DM      ++   D     +  +    D ++  L+    +    A +   N
Sbjct: 27  GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126
             G     CG+G   +V  L    K +  T   ET  G + A  + D S+SV        
Sbjct: 81  NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183
            + +P  R    ++ D    G V            + N H      D+L      ++   
Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQRVSSDNLDQLTEYAWTVR 190

Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228
                       G  +    +F+        +              ++R       CG+ 
Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239

Query: 229 ACASVVASGCLHKTNR 244
             A +       K   
Sbjct: 240 TSAKIACLAADGKLES 255


>gi|228959617|ref|ZP_04121297.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800064|gb|EEM47001.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M    P           LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|290958825|ref|YP_003490007.1| hypothetical protein SCAB_43981 [Streptomyces scabiei 87.22]
 gi|260648351|emb|CBG71462.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 318

 Score = 40.5 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 12/198 (6%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D  G       D    L+      + +   +    +A+    +R  +   +EV  CG
Sbjct: 58  VVLDASGL------DDAAMLAIAAEVGYSETAFVTAADEAARRFRVRYFSP-LAEVAFCG 110

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGIL---VAKENRDGSISVDMGEPILDWKLIPLARS 135
           +    +   L  R+      F+T+ G +    + +  DG+    +     D +  P    
Sbjct: 111 HATVALAVALAERLGPGEVLFDTLAGEIPVATSVDASDGTARATLTSVPADSR--PATAP 168

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                 +       +      P V   G  H +          DLA   + LA+     +
Sbjct: 169 ERDAALEALGWSDGDLDPALPPHVAFGGVRHLVLAAGSRARLADLAYDFDALAEVMRRHD 228

Query: 196 GVNLSIARVTSLESLDLR 213
              + +    S +    R
Sbjct: 229 WTTVHLVWRESPDRFHAR 246


>gi|260816350|ref|XP_002602934.1| hypothetical protein BRAFLDRAFT_251802 [Branchiostoma floridae]
 gi|229288248|gb|EEN58946.1| hypothetical protein BRAFLDRAFT_251802 [Branchiostoma floridae]
          Length = 297

 Score = 40.5 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 78/256 (30%), Gaps = 56/256 (21%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDG 114
            +S    +R      +EV  CG+         F   +      TF+T+ G L A+   D 
Sbjct: 67  SSSSKFGLRWFTPT-NEVALCGHATLASAATLFYMMKNPSSQLTFQTLSGDLFARREGDF 125

Query: 115 SISVDMGEPILDWK-----------LIPLARSFDKMDRDRFHIGPVNHLFLRN-----PF 158
            IS+D+ E     +            +P+   F      +  +   +           P 
Sbjct: 126 -ISLDLPENKSQPQVQTYTLIIVVGDLPVQDLFVSHTAKKLVVRLQDGTTRSTLESLRPD 184

Query: 159 VVSMGNPHA-------IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLES 209
             SM   H        I  V+  L +  + + G +      +        A       + 
Sbjct: 185 TASMLAAHTQDIIRGVIVTVKGSLENGCVDNHGEMCDFISRY-------FAPWNGIPEDP 237

Query: 210 LDLRTWERGVGLTAACGSAACASVVA---SGCLHKTNRAVS-VKMLGGGLLIEWHDNNHV 265
           +                + +  +V+A   +  L KT          GG L +   ++  V
Sbjct: 238 V----------------TGSAHTVLASYWAKELGKTEFYARQCSARGGDLKVRLREDGRV 281

Query: 266 FMTGEAKKEWEGKLDI 281
            + G+A    +G + I
Sbjct: 282 DVAGKATVVLQGMIRI 297


>gi|229145999|ref|ZP_04274378.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST24]
 gi|296503932|ref|YP_003665632.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis BMB171]
 gi|228637607|gb|EEK94058.1| Phenazine biosynthesis protein PhzF [Bacillus cereus BDRD-ST24]
 gi|296324984|gb|ADH07912.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis BMB171]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M    P           LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|58582764|ref|YP_201780.1| hypothetical protein XOO3141 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427358|gb|AAW76395.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 341

 Score = 40.5 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 22  DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77
           D+  C D   S  D   +    +    D ++  L+   +D S    +   N  G     C
Sbjct: 59  DLAQCRDRFRSEFDQWRSAIACEPRGSDTMVGALLLPPRDQSACTGVIFFNNVGYLG-MC 117

Query: 78  GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           G+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 118 GHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 161


>gi|228953688|ref|ZP_04115728.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805922|gb|EEM52501.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      +++I  +        D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEEMQIIAEK--VGYNEITFVL--STEVGDIRMRYFTP-GFEMDLCGHGTVGTIFA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAK--ENRDGSISVDMGEPI-----LDWKLIPLARSFD 137
           L  +    ++ + T ET  GIL  +   N +G   + M +              LA S  
Sbjct: 84  LREKGLLEEKSNLTIETKAGILPIQIGVNENGETFIKMRQAAPQFKEFTGSTEELAHSIG 143

Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160
               D     P+ +    N  V+
Sbjct: 144 LEVNDLDVSLPIVYGSTGNWTVI 166


>gi|299770655|ref|YP_003732681.1| proline racemase [Acinetobacter sp. DR1]
 gi|298700743|gb|ADI91308.1| proline racemase [Acinetobacter sp. DR1]
          Length = 310

 Score = 40.5 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 22/172 (12%)

Query: 13  GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68
           G G      DM      ++   D     +  +    D ++  L+    +    A +   N
Sbjct: 27  GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPLNPKASAGVIFFN 80

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126
             G     CG+G   +V  L    K +  T   ET  G + A  + D S+SV        
Sbjct: 81  NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            + +P  R    ++ D    G V            + N H      D+L   
Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQHVASDNLDQL 182


>gi|222096880|ref|YP_002530937.1| phenazine biosynthesis protein, phzf family [Bacillus cereus Q1]
 gi|221240938|gb|ACM13648.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus Q1]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      +++   +   + A  D  +R     G E+  CG+G    +  
Sbjct: 29  DGLTEEEMQRIAEK--VGYNETTFVLSSEVA--DIRMRYFTP-GYEMDLCGHGTVGTIYA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAKENRD 113
           L  R    ++ + T ET  GIL  + + +
Sbjct: 84  LRERGLLEEKTNITIETKAGILPIQIDVN 112


>gi|300173344|ref|YP_003772510.1| hypothetical protein LEGAS_1043 [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887723|emb|CBL91691.1| Uncharacterized isomerase [Leuconostoc gasicomitatum LMG 18811]
          Length = 283

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENR 112
            +  D  +        EV  CG+    +  F    L +++ + ++T ET  G+L  + + 
Sbjct: 52  SSVADFCLEYFTPT-EEVPLCGHAT--IGTFAILNLLNKLSKNNYTIETKSGVLSIEVDP 108

Query: 113 DGSISVDMGEPIL 125
           DG + +    P  
Sbjct: 109 DGMVFMAQNTPTF 121


>gi|229047089|ref|ZP_04192710.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH676]
 gi|228724249|gb|EEL75585.1| Phenazine biosynthesis protein PhzF [Bacillus cereus AH676]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDM--GEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M    P           LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|292654860|ref|YP_003534757.1| diaminopimelate epimerase [Haloferax volcanii DS2]
 gi|291372576|gb|ADE04803.1| diaminopimelate epimerase [Haloferax volcanii DS2]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 81/274 (29%), Gaps = 32/274 (11%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D + ++ + AL+ +      +   +     A+ D  IR       EV  CG+        
Sbjct: 29  DGLDAEQMRALAAE--LGASETAFV--CSSAAADRRIRYFTPQ-QEVDLCGHATIAAHAH 83

Query: 88  LTSRMKRK--SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145
           L +    +  + T ET  G L  +    G + +    P +    +   R    +  D   
Sbjct: 84  LAAERDLEPGTHTLETNVGTLDIELGDLGEVWMTQDAPTVRPLEVDYDRLAAALGVDDAA 143

Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVE-----DDLYHYDLASFGNLLAKHPM-FSEGVNL 199
           +  V         V S G P  +  V            D A            F      
Sbjct: 144 LRDVGADLP--VAVASTGLPFLVVPVNFLEHLSAADPDDAAIADLAAEHDAAGFYAYT-- 199

Query: 200 SIARVTSLESLDLRTWERGVG--LTAACGSAACASVVASGCLHKTNRAVS---------V 248
               +    +L  R +  G+G     A G+AA A       +   +             V
Sbjct: 200 -FDAIDGDSTLHARCFAPGIGISEDPATGTAAGACGAYLRQVGAFDSMPDELRFEQGHFV 258

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              G    +       + + G A + ++G++ + 
Sbjct: 259 DRPG---TVRVQVGAEIRVGGRAVQSFDGEIVVP 289


>gi|152975883|ref|YP_001375400.1| PhzF family phenazine biosynthesis protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024635|gb|ABS22405.1| phenazine biosynthesis protein PhzF family [Bacillus cytotoxicus
           NVH 391-98]
          Length = 299

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 19/152 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D  G    +T   +  ++      F++   +     A  D  IR     G E+  CG
Sbjct: 24  IVLDAEG----LTDYEMQRIAEK--VGFNETAFVFPSNVA--DIKIRYFTP-GHEMNLCG 74

Query: 79  NGMRCVVRFLTSRMKRKSFT---FETIRGIL--VAKENRDGSISVDMGEPI-----LDWK 128
           +     +  L +R   K       ET  GIL    + + +G + V M +           
Sbjct: 75  HATVATIYALYTRGVWKEVRNLLLETKAGILPVCVEIDGNGEVYVRMRQVEPQFQGFHGS 134

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
              +ARS    + D     P+ +       ++
Sbjct: 135 KEEVARSIGLHEEDIDETLPIVYGSTGVWTLL 166


>gi|292653723|ref|YP_003533621.1| proline racemase [Haloferax volcanii DS2]
 gi|291369717|gb|ADE01945.1| proline racemase [Haloferax volcanii DS2]
          Length = 353

 Score = 40.1 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQI--MLIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R      T D +  L   +    D +   ++ D      D  +  ++  G  +  CG+G
Sbjct: 58  ERRDSFADTHDWVRDLLMREPRGHDDMFGAVVVDSDHPDADVGVFFMDSRG-YLDMCGHG 116

Query: 81  MRCVVRFLTSRMK---RKSFTFETIRGILVAK-----ENRDGSISV-DMGEPILDWKLIP 131
              VV  L    +   RK+   ET  G++ A      +     +++ ++   + D   +P
Sbjct: 117 TIGVVSALLELDRLDRRKTIRVETPAGLVEATPEYVPDGGVECVTIQNVRSFVYDQATVP 176

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD-LASFGNLLAKH 190
           ++     +  D  + G    L   +   + +   HA  FV+  L   D +    +++  H
Sbjct: 177 VSFLDSSLRVDVVYAGNFFALVDSDQLGLPVEPQHAATFVDWGLEIRDAVNERLDIV--H 234

Query: 191 PMFSEGVNLSIARVTS-LESLD--LRTWERG-VGLTAACGSAACA 231
           P+  E  ++SI  +    + +D  +  +  G V  +  CG+  CA
Sbjct: 235 PLTGEEGSISITEIYGTPDEVDRSIVVFGEGQVDRSP-CGTGTCA 278


>gi|271970126|ref|YP_003344322.1| PhzF family phenazine biosynthesis protein [Streptosporangium
           roseum DSM 43021]
 gi|270513301|gb|ACZ91579.1| PhzF family phenazine biosynthesis protein [Streptosporangium
           roseum DSM 43021]
          Length = 262

 Score = 40.1 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 35/220 (15%)

Query: 73  EVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           EV  CG+        L S     ++  F T  GIL    +  G IS+D    +L  +  P
Sbjct: 67  EVALCGHATLAAAHVLYSTGSAPETLEFSTKSGILSVTRDGTGLISMDFPAKVLQ-ETGP 125

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNP---FVVSMGNPHAIFFVEDDLYHYDL---ASFGN 185
                  +  +   +G  +  +L        V   +P  +   + D     +   AS   
Sbjct: 126 PDGLAAALGVEPVWVGKNDWDYLVEVDSEEAVRAASPDFLALEKVDARGTIVTAPASIPG 185

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +      F+  V ++       + +                + +    +A     K   A
Sbjct: 186 VDYVSRFFAPRVGVN------EDPV----------------TGSAHCALAPYWTGKLGLA 223

Query: 246 VSV----KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             V       GG +       + V ++G A     GKL +
Sbjct: 224 SLVGAQLSQRGGVIHTTVR-GDRVELSGHAVTVLSGKLHV 262


>gi|215275650|sp|A0AZQ0|HYPRE_BURCH RecName: Full=4-hydroxyproline epimerase; AltName:
           Full=Hydroxyproline-2-epimerase; Short=HyPRE
          Length = 310

 Score = 40.1 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ D       A +   N  G     CG+G   VVR L  
Sbjct: 43  DRYRTACILEPRGSDVMVGALLCDPVAPDAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R++      ET  G + A  + D S+SV
Sbjct: 102 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 131


>gi|145297978|ref|YP_001140819.1| phenazine biosynthesis PhzC/PhzF protein [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850750|gb|ABO89071.1| Phenazine biosynthesis PhzC/PhzF protein [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 295

 Score = 40.1 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 34/222 (15%)

Query: 73  EVQSCGNGMRCVVRFLT---SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           EV  CG+G       L        ++   FET  G+L+A+   +  I +D     L   +
Sbjct: 95  EVDLCGHGTLAAAHVLWQTGEVAPQEVIRFETRSGVLLARREGE-WIQLDFPRIPLTPLV 153

Query: 130 IPLA--RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP--HAIFFVEDD--LYHYDLASF 183
           +  A   +     R     G    L L +   V    P  HA+  +     +     +  
Sbjct: 154 LDPAYGAALGCTPRQTLAAGAKFLLELESEEEVRGLVPDFHALRALPGRGLMVTAPSSRA 213

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCLHKT 242
           G+       F+  V                    GV      GS  CA V   +  L KT
Sbjct: 214 GDDF-VSRYFAPWV--------------------GVDEDPVTGSNHCALVPFWAARLGKT 252

Query: 243 NRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                 +   GG L++E    + V M+G+A   W+G+  + +
Sbjct: 253 RLKARQISARGGELVLELQ-GDRVLMSGQALTLWQGEWLLPS 293


>gi|21243283|ref|NP_642865.1| hypothetical protein XAC2550 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108821|gb|AAM37401.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 312

 Score = 40.1 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+   +D S    +   N  G     CG+G   VVR L  
Sbjct: 43  DHWRSAIACEPRGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +  +   DG++SVD
Sbjct: 102 LGRIAPGQHRIETPVGTVGVELADDGTVSVD 132


>gi|167838848|ref|ZP_02465625.1| proline racemase, putative [Burkholderia thailandensis MSMB43]
          Length = 310

 Score = 40.1 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 32  SDAINALSTDDNT----------HFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           ++ + AL+ D +             D ++  L+ +   A   A +   N  G     CG+
Sbjct: 32  AERLAALARDHDRYRTACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGH 90

Query: 80  GMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISV 118
           G   +VR L    R+       ET  G + A  + D S+SV
Sbjct: 91  GTIGLVRTLHHMGRIAPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|157370082|ref|YP_001478071.1| proline racemase [Serratia proteamaculans 568]
 gi|157321846|gb|ABV40943.1| proline racemase [Serratia proteamaculans 568]
          Length = 315

 Score = 40.1 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTFETIRGILVA 108
           L+         A +   N  G     CG+G +  V       ++       ET  G + A
Sbjct: 69  LLCQPCSPQAAAGVIFFNNSGYLG-MCGHGTIGLVASLAYLGKIGVGEHLIETPVGTVNA 127

Query: 109 KENRDGSISVD 119
             ++DGS++V+
Sbjct: 128 TLHQDGSVTVE 138


>gi|212711967|ref|ZP_03320095.1| hypothetical protein PROVALCAL_03043 [Providencia alcalifaciens DSM
           30120]
 gi|212685489|gb|EEB45017.1| hypothetical protein PROVALCAL_03043 [Providencia alcalifaciens DSM
           30120]
          Length = 316

 Score = 40.1 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILV 107
           L+    +    A +   N +G     CG+G   +V    +L  R+       ET  G + 
Sbjct: 67  LLCKPVNPKAAAGVIFFNNEGYLG-MCGHGTIGLVASLHYL-GRIGYGEHLIETPVGDVT 124

Query: 108 AKENRDGSISVD 119
           AK + DGS+S+ 
Sbjct: 125 AKLHEDGSVSIQ 136


>gi|167722397|ref|ZP_02405633.1| proline racemase family protein [Burkholderia pseudomallei DM98]
          Length = 194

 Score = 40.1 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A    +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 43  DRYRAACILEPRGSDVLVGALLCEPVSAGAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIGPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|108758190|ref|YP_634330.1| putative proline racemase [Myxococcus xanthus DK 1622]
 gi|108462070|gb|ABF87255.1| putative proline racemase [Myxococcus xanthus DK 1622]
          Length = 311

 Score = 40.1 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR---F 87
           DA       +    D ++  L+     AS  A I   N  G     CG+G   VV+   +
Sbjct: 43  DAFRKAIVCEPRGSDVMVGALLCPPVSASSVAGIIFFNNVGYLG-MCGHGTIGVVKTLEY 101

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           L  R+     + ET  G++ A  + DG +S+    P   W 
Sbjct: 102 L-GRIGPGVHSLETPVGVVKATLHPDGRVSIA-NVPSYRWA 140


>gi|206576988|ref|YP_002240611.1| proline racemase family protein [Klebsiella pneumoniae 342]
 gi|206566046|gb|ACI07822.1| proline racemase family protein [Klebsiella pneumoniae 342]
          Length = 315

 Score = 40.1 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D     +  +    D ++  L+     A+  A +   N  G  +  CG+G   ++  L  
Sbjct: 49  DHWRQAAILEPRGNDVLVGALLCKPVSAAATAGVIFFNNAG-FLNMCGHGTIGLIASLAW 107

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R++      ET  G + A  + DGS+SV         K I +  +   +  D      
Sbjct: 108 LGRIQPGVHLIETPVGDVSATLHDDGSVSVQNVPARRWKKQIRVETAHGPVIGD--IAWG 165

Query: 149 VNHLFLRNPF 158
            N  FL N  
Sbjct: 166 GNWFFLINDH 175


>gi|126669065|ref|ZP_01739998.1| glyceraldehyde-3-phosphate dehydrogenase, putative [Marinobacter
           sp. ELB17]
 gi|126626467|gb|EAZ97131.1| glyceraldehyde-3-phosphate dehydrogenase, putative [Marinobacter
           sp. ELB17]
          Length = 556

 Score = 40.1 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 29/119 (24%)

Query: 93  KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152
            R+S  FET+ G++         +++ MG                       +  P+N  
Sbjct: 172 DRRSSRFETVGGVVAQTRRLPVGVALCMGP----------------------YNYPLNET 209

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESL 210
           F      + MGN   + F       Y +   G LL      F  GV ++I      +++
Sbjct: 210 FTTLIPALIMGN--TVVFKP---AKYGVLLIGPLLEAFQKAFPAGV-INIIFGRGRDTI 262


>gi|78048304|ref|YP_364479.1| proline racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78036734|emb|CAJ24427.1| proline racemase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 312

 Score = 40.1 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+   +D      +   N  G     CG+G   VVR L  
Sbjct: 43  DHWRSAIACEPRGSDTMVGALLLPPRDPGACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +  +   DG++ VD
Sbjct: 102 LGRIGPGQHRIETPVGTVGVELADDGTVWVD 132


>gi|88801192|ref|ZP_01116734.1| hypothetical protein MED297_07286 [Reinekea sp. MED297]
 gi|88776066|gb|EAR07299.1| hypothetical protein MED297_07286 [Reinekea sp. MED297]
          Length = 294

 Score = 40.1 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 44/247 (17%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     D +T+  +  ++ + N  F +   +   Q    D  IRI     SEV   G
Sbjct: 23  VVLDA----DRLTTAQMQQIAREFN--FSETTFVCAPQQGG-DYQIRIFTP-SSEVPFAG 74

Query: 79  N---GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           +   G  CV+      +    F FE   G +     R G +       ++  + +   + 
Sbjct: 75  HPNIGTACVLAEHLDVVSGYCFQFEERAGRVPVTVRRTGKLWQ---AELVAPEPLQFGQV 131

Query: 136 FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL------- 186
            D           V+ L L   +P + S+G P    FV  +L  +D      +       
Sbjct: 132 HDPALIAEVLSLSVDDLALQTHSPQITSVGLP----FVMVELKTHDALQRARVNTQALDR 187

Query: 187 ---LAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSAACASVVASG 237
              +  +P       L +   T+ + +D+RT  R      GV    A GSA CA      
Sbjct: 188 LLAIEPNPF------LHLYVKTADDEVDVRT--RMFAPTDGVPEDPATGSANCALAAMLA 239

Query: 238 CLHKTNR 244
                + 
Sbjct: 240 QYDAADE 246


>gi|170702821|ref|ZP_02893672.1| proline racemase [Burkholderia ambifaria IOP40-10]
 gi|170132273|gb|EDT00750.1| proline racemase [Burkholderia ambifaria IOP40-10]
          Length = 311

 Score = 40.1 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+         A +   N  G     CG+G   VVR L  
Sbjct: 44  DRYRTACILEPRGSDVMVGALLCQPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHH 102

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R++      ET  G + A  + D S+SV
Sbjct: 103 MGRIEPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|325925080|ref|ZP_08186500.1| proline racemase [Xanthomonas perforans 91-118]
 gi|325544496|gb|EGD15859.1| proline racemase [Xanthomonas perforans 91-118]
          Length = 312

 Score = 39.7 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+   +D      +   N  G     CG+G   VVR L  
Sbjct: 43  DHWRSAIACEPRGSDTMVGALLLPPRDPGACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +  +   DG++ VD
Sbjct: 102 LGRIGPGQHRIETPVGTVGVELADDGTVWVD 132


>gi|308481157|ref|XP_003102784.1| hypothetical protein CRE_29948 [Caenorhabditis remanei]
 gi|308260870|gb|EFP04823.1| hypothetical protein CRE_29948 [Caenorhabditis remanei]
          Length = 321

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
            ++R      SEV  CG+        L + +    K   FET  GIL  + +  G++ ++
Sbjct: 66  FYLRWFTPT-SEVPLCGHATLATSHVLFNEIGNLNKELKFETQTGILAVRRDESGNVELN 124

Query: 120 MGEPILDWKLIPLARSFDKM 139
           +  P  D   I    + + +
Sbjct: 125 L--PEYDLTSIKFHHTTNPL 142


>gi|170757131|ref|YP_001780459.1| PhzF family phenazine biosynthesis protein [Clostridium botulinum
           B1 str. Okra]
 gi|169122343|gb|ACA46179.1| phenazine biosynthesis protein PhzF family [Clostridium botulinum
           B1 str. Okra]
          Length = 289

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +VI+     D+++ D +  ++      F +   + +   A  D  +R    +  EV  CG
Sbjct: 23  VVINA----DDLSEDNMKKVAGI--IGFSETAFVMNSDLA--DFKVRFFTPN-EEVDICG 73

Query: 79  NG-MRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           +  +      L   R++   +  ET  G+L  +   D SI ++   P     +       
Sbjct: 74  HATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETI------C 127

Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMG 163
            +   D  +I            +VS G
Sbjct: 128 KQEIADSLNITTAEMSEELPIQIVSTG 154


>gi|115358300|ref|YP_775438.1| proline racemase [Burkholderia ambifaria AMMD]
 gi|115283588|gb|ABI89104.1| proline racemase [Burkholderia ambifaria AMMD]
          Length = 311

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 36  NALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSR 91
                 +    D ++  L+ +       A +   N  G     CG+G   VVR L    R
Sbjct: 47  RTACILEPRGSDVMVGALLCEPVSPEAAAGVIFFNNSGYLG-MCGHGTIGVVRTLHHMGR 105

Query: 92  MKRKSFTFETIRGILVAKENRDGSISV 118
           ++      ET  G + A  + D S+SV
Sbjct: 106 IEPGVHRIETPVGTVEATLHDDLSVSV 132


>gi|42782484|ref|NP_979731.1| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC
           10987]
 gi|42738410|gb|AAS42339.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus ATCC
           10987]
          Length = 299

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|317407800|gb|EFV87727.1| proline racemase [Achromobacter xylosoxidans C54]
          Length = 337

 Score = 39.7 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG+E    C
Sbjct: 34  ILEKRAFLEQHYDWLRKALMREPRGHKDMFGVFLTPPSSPEYDAGLIYI--DGTEYSHMC 91

Query: 78  GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG----SISVDMGEPILD 126
           G+G   V   + +               FET  G++V++   +G        +     + 
Sbjct: 92  GHGTIAVSMAMVANGLVPRGQDGITRIRFETTAGLVVSEVASEGDNVLWTRFENVPAYVA 151

Query: 127 WKLIPLARS 135
            + IP+   
Sbjct: 152 AQDIPVELP 160


>gi|126641371|ref|YP_001084355.1| hypothetical protein A1S_1325 [Acinetobacter baumannii ATCC 17978]
          Length = 280

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 60/213 (28%), Gaps = 41/213 (19%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108
           L+    +    A +   N  G     CG+G   +V  L    K +  T   ET  G + A
Sbjct: 33  LLCKPVNPKASAGVIFFNNTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEA 91

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + D S+SV         + +P  R    ++ D    G V            + N H  
Sbjct: 92  TLHEDHSVSV---------RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQ 142

Query: 169 FFVEDDLYHYDLASF---------------GNLLAKHPMFSEGVNL---SIARVTSLESL 210
               D+L      ++               G  +    +F+        +          
Sbjct: 143 RVASDNLDQLTEYAWTVRQALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA-- 200

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
               ++R       CG+   A +       K  
Sbjct: 201 ----YDRSP-----CGTGTSAKIACLAADGKLE 224


>gi|319796572|ref|YP_004158212.1| 4-hydroxyproline epimerase [Variovorax paradoxus EPS]
 gi|315599035|gb|ADU40101.1| 4-hydroxyproline epimerase [Variovorax paradoxus EPS]
          Length = 311

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D   A +  +    D ++  L+ +       A +   N  G     CG+G   +V  L  
Sbjct: 43  DKWRAATVLEPRGSDVVVGALLCEPVSPDAAAGVIFFNNAGYLG-MCGHGTIGLVASLAH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G +    + DGS+SV
Sbjct: 102 MGRIGVGEHRIETPVGTVTTTLHADGSVSV 131


>gi|238023840|ref|YP_002908072.1| putative proline racemase [Burkholderia glumae BGR1]
 gi|237878505|gb|ACR30837.1| Putative proline racemase [Burkholderia glumae BGR1]
          Length = 321

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG 80
            R        D   A    +    D ++  L+ +  D S  A +   N  G     CG+G
Sbjct: 33  ERLERLRRDHDDWRAAVVTEPRGSDVMVGALLCESDDPSCAAGVIFFNNVGYLG-MCGHG 91

Query: 81  MRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISV 118
              +V  L    R+       ET  GI+ A  N DGS+SV
Sbjct: 92  TIGLVVSLAHLGRIGPGVHRIETPVGIVEATLNPDGSVSV 131


>gi|193077004|gb|ABO11753.2| hypothetical protein A1S_1325 [Acinetobacter baumannii ATCC 17978]
          Length = 310

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 72/255 (28%), Gaps = 51/255 (20%)

Query: 13  GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68
           G G      DM      ++   D     +  +    D ++  L+    +    A +   N
Sbjct: 27  GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126
             G     CG+G   +V  L    K +  T   ET  G + A  + D S+SV        
Sbjct: 81  NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183
            + +P  R    ++ D    G V            + N H      D+L      ++   
Sbjct: 132 -RNVPAYRYKKAVEVDVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVR 190

Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228
                       G  +    +F+        +              ++R       CG+ 
Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239

Query: 229 ACASVVASGCLHKTN 243
             A +       K  
Sbjct: 240 TSAKIACLAADGKLE 254


>gi|255023006|ref|ZP_05294992.1| phenazine biosynthesis protein, PhzF family [Listeria monocytogenes
           FSL J1-208]
          Length = 282

 Score = 39.7 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111
           +    D  +        EV  CG+    +  F      +++ +  +T ET  G+L     
Sbjct: 52  ESNCADFKLEYFTP-KEEVALCGHAT--IGTFAILKHVNKIHKNRYTIETNSGVLTITI- 107

Query: 112 RDGSISVDMGEPILDWKLIPLA 133
           +DG+I ++  +P   + +IP A
Sbjct: 108 KDGTIFMEQNQPTF-YDIIPPA 128


>gi|229070860|ref|ZP_04204088.1| Phenazine biosynthesis protein PhzF [Bacillus cereus F65185]
 gi|229080623|ref|ZP_04213143.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock4-2]
 gi|228702724|gb|EEL55190.1| Phenazine biosynthesis protein PhzF [Bacillus cereus Rock4-2]
 gi|228712250|gb|EEL64197.1| Phenazine biosynthesis protein PhzF [Bacillus cereus F65185]
          Length = 299

 Score = 39.7 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGSIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSTEELAHSIGLEINDLDVSLPIVYGSTGNWTVI 166


>gi|187919272|ref|YP_001888303.1| proline racemase [Burkholderia phytofirmans PsJN]
 gi|187717710|gb|ACD18933.1| proline racemase [Burkholderia phytofirmans PsJN]
          Length = 341

 Score = 39.7 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99
              D ++  L+ +  D +  A +   N  G     CG+G   +V  L    R+       
Sbjct: 80  RGSDVVVGALLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIGAGRHRI 138

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  GI+ A  N DGS++V
Sbjct: 139 ETPVGIVEATLNDDGSVAV 157


>gi|228922131|ref|ZP_04085441.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837547|gb|EEM82878.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 299

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA+S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAQSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|332638649|ref|ZP_08417512.1| PhzF family phenazine biosynthesis protein [Weissella cibaria KACC
           11862]
          Length = 281

 Score = 39.7 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKR---KSFTFETIRGILVAKE 110
                 D          SEV  CG+    +  F L   + +     +T ET  GI+  + 
Sbjct: 51  SGSDQADFKFEYYTPT-SEVDLCGHAT--IASFTLMRELGKVVPNQYTIETKAGIIPIEV 107

Query: 111 NRDGSISVDMG-----------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
                  + M            +P L  + I ++   D  D      G  + L   N   
Sbjct: 108 QPK---RIFMNQQPSEFFEKIEKPELS-EAIDISAVNDNFDIQVVSKGGKDILVPVNINE 163

Query: 160 VSMGNP 165
           ++  NP
Sbjct: 164 LNALNP 169


>gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis]
 gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis]
          Length = 489

 Score = 39.7 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 74/251 (29%), Gaps = 54/251 (21%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKE--------- 110
             +R      +EV+ CG+         F    +      F+T+ GIL AK+         
Sbjct: 258 FRLRWFTP-VAEVKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDV 316

Query: 111 ------NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH-------IGPVNHLFLRNP 157
                   +    +++  P +      L+  F+ +D            I  +      + 
Sbjct: 317 SSIQNGEANELFLIELNFPTV------LSTEFNSVDLAPISKALNGASIIDIRRTTTADD 370

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
             V + +  A+  ++       L   G  +    +                      + R
Sbjct: 371 LFVVLPSAKAVSELQPQFDDI-LKCPGRGIIVSGVAPPESGFDF-------------YSR 416

Query: 218 ------GVGLTAACGSAACASV-VASGCLHKTN-RAVSVKMLGGGLLIEWHD-NNHVFMT 268
                 G+     CGSA CA        L K +  A       G L I   + N  V + 
Sbjct: 417 FFCPKYGINEDPVCGSAHCALAPYWGKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLR 476

Query: 269 GEAKKEWEGKL 279
           G+A    EG L
Sbjct: 477 GKAVTVMEGSL 487


>gi|289661711|ref|ZP_06483292.1| proline racemase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 312

 Score = 39.7 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 22  DMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSC 77
           D+  C +   S  D   +    +    D ++  L+   ++          N  G     C
Sbjct: 30  DLAQCRERFRSEFDQWRSAIACEPRGSDTMVGALLLPPREPGACTGAIFFNNVGYLG-MC 88

Query: 78  GNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           G+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 89  GHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVELADDGTVSVD 132


>gi|323496470|ref|ZP_08101528.1| putative epimerase [Vibrio sinaloensis DSM 21326]
 gi|323318747|gb|EGA71700.1| putative epimerase [Vibrio sinaloensis DSM 21326]
          Length = 266

 Score = 39.7 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 218 GVGLTAACGSAACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           GV      GSA CA     A+     T  A      GG +++       V ++G A    
Sbjct: 201 GVNEDPVTGSAHCALAPYWAAKLRRSTINAYQASNRGGEVMMTLQQGGRVTLSGSAVTVI 260

Query: 276 EGKLDI 281
            G + +
Sbjct: 261 RGNISV 266


>gi|285018733|ref|YP_003376444.1| proline racemase [Xanthomonas albilineans GPE PC73]
 gi|283473951|emb|CBA16452.1| probable proline racemase protein [Xanthomonas albilineans]
          Length = 313

 Score = 39.7 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+    D +  A +   N  G     CG+G   +VR L  
Sbjct: 43  DRWRSAIACEPRGSDTMVGALLLPPLDPAACAAVIFFNNVGYLG-MCGHGTIGLVRTLVD 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+   +   ET  G +    + DG +SVD
Sbjct: 102 LGRLAPGAHRIETPVGTVGVALHDDGRVSVD 132


>gi|307325683|ref|ZP_07604884.1| phenazine biosynthesis protein PhzF family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888811|gb|EFN19796.1| phenazine biosynthesis protein PhzF family [Streptomyces
           violaceusniger Tu 4113]
          Length = 274

 Score = 39.7 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 38/241 (15%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
            + A  D  +R      +E   CG+        L +      +  F T+ G+L A  +  
Sbjct: 54  PEAAEADWALRWFTP-VTEAPMCGHATLATTHVLKTTGAATGTVRFATLSGVLSATADDG 112

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GSI++D   P      +P+ +   ++       G +    +          PH    + +
Sbjct: 113 GSITLDF--PTAALTALPVPQQTAEV------AGALGAEIVSAHHA----GPHIDDLLIE 160

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT-----AACG-- 226
                 + +    LA     S    +  A              RG          A G  
Sbjct: 161 LADEKTVRALAPDLAALKRISHRGVIVTAAAEDPT--------RGYDFVSRMFAPAVGID 212

Query: 227 ----SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               + +  + +A     +  R     + V    G L+      +   +TG A    +G+
Sbjct: 213 EDPVTGSAHTALAPYWSARFGRDELTGLQVSARSG-LVRTVLRGDRTLLTGGAVTVIDGE 271

Query: 279 L 279
           L
Sbjct: 272 L 272


>gi|323483166|ref|ZP_08088557.1| hypothetical protein HMPREF9474_00306 [Clostridium symbiosum
           WAL-14163]
 gi|323691393|ref|ZP_08105667.1| hypothetical protein HMPREF9475_00529 [Clostridium symbiosum
           WAL-14673]
 gi|323403439|gb|EGA95746.1| hypothetical protein HMPREF9474_00306 [Clostridium symbiosum
           WAL-14163]
 gi|323504536|gb|EGB20324.1| hypothetical protein HMPREF9475_00529 [Clostridium symbiosum
           WAL-14673]
          Length = 278

 Score = 39.7 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 45/258 (17%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + +    A+  +++ + +Q   +      +    + ++       + CGN  R  
Sbjct: 23  EVPPELYAAVGAAILKEEDLNAEQAGFLLKPLRGAA-GRMEMM-----GGEFCGNASRSF 76

Query: 85  VRFLTSRMK---RKSFTFETIRG--ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139
              L  R      +    E      IL      DGS  V M  P    + I      ++ 
Sbjct: 77  GLLLGRRNGMKAGERIPVEVSGSKDILEVLLEEDGSW-VSMPLP----QAITELSLPEEC 131

Query: 140 DRDRFHIGPVNHLFLRNPFVVSMGNPHAIF------------FVEDDLYHYDLASFGNL- 186
            RD           LR P VV  G  H I              ++      D+ + G + 
Sbjct: 132 GRDSGISSSDGSGLLRFPAVVLEGITHVILEDVEPSETLAHAVLDKMAKETDVDAAGAIF 191

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV-ASGCLHKTNRA 245
           +    M        +  V + +S     WE      ++CGS   AS V     +   +  
Sbjct: 192 IKDGEMTP------VVWVRATDSF---IWE------SSCGSGTLASTVWLGRDVADGDFR 236

Query: 246 VSVKMLGGGLLIEWHDNN 263
           + +K  GG L  E+   N
Sbjct: 237 LELKQPGGILKAEFTAKN 254


>gi|260789391|ref|XP_002589730.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae]
 gi|229274912|gb|EEN45741.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae]
          Length = 293

 Score = 39.7 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 78/245 (31%), Gaps = 30/245 (12%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGM--RCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                  +R       E+  CG+         F          TF T  G L AK   D 
Sbjct: 59  STGSRFGLRWFTPT-KEIDLCGHATLASAAALFYIMDNPSPQLTFLTRSGELFAKRQGD- 116

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            IS+D+       + +P  +  +   R    I           +  S+G    +  + DD
Sbjct: 117 YISLDL------PENVPEPQDREAYSRLLRAIVGTT-PVQEVRYCSSVGGDLLV-RLADD 168

Query: 175 LYHYDLASF----GNLLAKH-PMFSEGVNLSI-----ARVTSLESLDLRTWER------G 218
                L S     G ++A H      GV +++         +   +      R      G
Sbjct: 169 TTRSTLESLSPDVGAMMAAHTEGKLRGVAVTVKGSPSNGCVNDNGVKYDFISRFFSPWYG 228

Query: 219 VGLTAACGSA-ACASVVASGCLHKTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           V     CGSA    +   +  L KT+  V      GG L +    +  V + G+A     
Sbjct: 229 VAEDPVCGSAHTVLASYWAKELGKTDFYVRQCSPRGGDLKVWLRGDGRVEVAGKATVVLN 288

Query: 277 GKLDI 281
           GK+ I
Sbjct: 289 GKIKI 293


>gi|289668666|ref|ZP_06489741.1| proline racemase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 312

 Score = 39.3 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+   ++          N  G     CG+G   VVR L  
Sbjct: 43  DQWRSAIACEPRGSDTMVGALLLPPREPGACTGAIFFNNVGYLG-MCGHGTIGVVRTLAE 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +  +   DG++SVD
Sbjct: 102 LGRIAPGQHRIETPVGTVGVELADDGTVSVD 132


>gi|242243431|ref|ZP_04797876.1| diaminopimelate epimerase [Staphylococcus epidermidis W23144]
 gi|242233051|gb|EES35363.1| diaminopimelate epimerase [Staphylococcus epidermidis W23144]
          Length = 242

 Score = 39.3 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 49/261 (18%)

Query: 42  DNTHFDQIMLIHDFQDASVD-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---- 96
            +   +Q+  I      + D   + +     S  + CGN     + +L  R+  +     
Sbjct: 4   THVCCEQVGFIESVNYENGDNYHLVM-----SGNEFCGNATMSYIHYLKERLLIQHQQFQ 58

Query: 97  FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156
                    +  K +      V M       K+  +   F K+   +F    +++    +
Sbjct: 59  LRVSGCSHPVECKVHSQH-YEVTM------PKVHQVKERFVKLGDQQFKAFEISYDTYIH 111

Query: 157 PFVVSMGNPHAIF-----FVEDDLYHYDLASFGNLLAKHP---MFSEGVNLSIARVTSLE 208
             ++  G   A+      FV    +H    + G +L +     ++       +  +  + 
Sbjct: 112 YVLMCDGVDLAMKQRVEDFVSAQTWHQQFKTIGVMLFQQDKQFIYP------LIHIPKIG 165

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS---VKMLGGGLLIEWHDNN-- 263
           SL    WE       +CGS A +  V     + T+  +    V   GG +++    +   
Sbjct: 166 SL---IWE------NSCGSGAASIGV--LVNYLTDHDIQDYLVNQPGGSIIVSSRKSEQN 214

Query: 264 --HVFMTGEAKKEWEGKLDIK 282
                + G+      G+  I+
Sbjct: 215 EYQTTIKGQVSTVATGQAYIE 235


>gi|68473476|ref|XP_719296.1| hypothetical protein CaO19.13065 [Candida albicans SC5314]
 gi|46441108|gb|EAL00408.1| hypothetical protein CaO19.13065 [Candida albicans SC5314]
          Length = 302

 Score = 39.3 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 102/317 (32%), Gaps = 67/317 (21%)

Query: 8   FA--KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F   K   +GN + VI      DN+T+  +  ++   N    +   I   + +  D  IR
Sbjct: 10  FTNVKY--LGNPVAVIYD---SDNLTTQEMQKIARWTN--LSETTFILTPKSSIADYSIR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124
           I    G+E+   G+        L    K K        G ++ +E   G + + + + P 
Sbjct: 63  IFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQII-QECGAGLVKISVEKTPN 117

Query: 125 LDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +   +P   SF           DK+  +  H     ++  + P ++  G   A+F +  
Sbjct: 118 NNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGK-PVLIDAGPKWAVFQLGS 176

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLR-----TWERGVGLTAACG 226
                DL      + +  + +    + +      + +S++LR         GV    ACG
Sbjct: 177 GKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV---GVAEDPACG 233

Query: 227 SAACAS-VVASGCLHKTNRAVSVK---------------------MLGGGLLIEWHDNNH 264
           S + A     +  +       ++                         G L I       
Sbjct: 234 SGSGAIGAYLANHVFNEKEKFTIDISQGKPIERGAKIQVKVNRLSTKNGDLSIHVG---- 289

Query: 265 VFMTGEAKKEWEGKLDI 281
               G A   +EG   I
Sbjct: 290 ----GHAITCFEGTYSI 302


>gi|52784670|ref|YP_090499.1| YfhB [Bacillus licheniformis ATCC 14580]
 gi|163119302|ref|YP_078094.2| phenazine biosynthesis-like protein [Bacillus licheniformis ATCC
           14580]
 gi|319646912|ref|ZP_08001140.1| YfhB protein [Bacillus sp. BT1B_CT2]
 gi|52347172|gb|AAU39806.1| YfhB [Bacillus licheniformis ATCC 14580]
 gi|145902808|gb|AAU22456.2| Phenazine biosynthesis-like protein [Bacillus licheniformis ATCC
           14580]
 gi|317390971|gb|EFV71770.1| YfhB protein [Bacillus sp. BT1B_CT2]
          Length = 298

 Score = 39.3 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENR 112
              S D  IR     G E+  CG+     +  L  +   +       ET  G+L      
Sbjct: 53  PSESADIRIRYFTP-GHEMNLCGHATVASLYALLEKGAIEAGAELKVETKAGVLSVYTAS 111

Query: 113 DG----SISVDMGEP---ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           DG     ++++   P           LA +    + D     PV +       ++
Sbjct: 112 DGNRRFLVTLEQAPPCFQSFTGSRSQLAEALGISEADFHEALPVVYGSTGIWTLL 166


>gi|268589765|ref|ZP_06123986.1| putative epimerase [Providencia rettgeri DSM 1131]
 gi|291314920|gb|EFE55373.1| putative epimerase [Providencia rettgeri DSM 1131]
          Length = 316

 Score = 39.3 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RFLTSRMKRKSFTFETIRGILV 107
           L+   Q+ +  A +   N  G     CG+G   +V    FL      K    ET  G + 
Sbjct: 67  LLCKPQNPAATAGVIFFNNQGYLG-MCGHGTIGLVASLHFLGHITYGKHL-IETPVGDVT 124

Query: 108 AKENRDGSISVD 119
           A+ ++DGS+S+ 
Sbjct: 125 AQLHQDGSVSIQ 136


>gi|229179696|ref|ZP_04307046.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 172560W]
 gi|228603802|gb|EEK61273.1| Phenazine biosynthesis protein PhzF [Bacillus cereus 172560W]
          Length = 299

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E++ CG+G    +  L  +    ++ +   ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMELCGHGTVGTIYALREKGLLEEKSNLMIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|310764785|gb|ADP09735.1| Proline racemase family protein [Erwinia sp. Ejp617]
          Length = 279

 Score = 39.3 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106
           L+         A +   N  G     CG+G     R +      ++       ET  G +
Sbjct: 33  LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 89

Query: 107 VAKENRDGSISV 118
           +A  ++D S+SV
Sbjct: 90  LAVLHQDLSVSV 101


>gi|206968766|ref|ZP_03229721.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           AH1134]
 gi|229151595|ref|ZP_04279797.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1550]
 gi|206735807|gb|EDZ52965.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           AH1134]
 gi|228631839|gb|EEK88466.1| Phenazine biosynthesis protein PhzF [Bacillus cereus m1550]
          Length = 299

 Score = 39.3 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E++ CG+G    +  L  +    ++ +   ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMELCGHGTVGTIYALREKGLLEEKSNLMIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|75910564|ref|YP_324860.1| phenazine biosynthesis PhzC/PhzF protein [Anabaena variabilis ATCC
           29413]
 gi|75704289|gb|ABA23965.1| Phenazine biosynthesis PhzC/PhzF protein [Anabaena variabilis ATCC
           29413]
          Length = 264

 Score = 39.3 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + A    +AS    +  +           GG + + +   + VF+ G+A     G+L
Sbjct: 207 TGAAHCCLASYWRDRLGKDEFLAYQASSRGGVVKVSYGGGDRVFLAGQAVTVLRGEL 263


>gi|259907707|ref|YP_002648063.1| Proline racemase [Erwinia pyrifoliae Ep1/96]
 gi|224963329|emb|CAX54814.1| Proline racemase [Erwinia pyrifoliae Ep1/96]
          Length = 279

 Score = 39.3 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106
           L+         A +   N  G     CG+G     R +      ++       ET  G +
Sbjct: 33  LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 89

Query: 107 VAKENRDGSISV 118
           +A  ++D S+SV
Sbjct: 90  LAVLHQDLSVSV 101


>gi|218231126|ref|YP_002368125.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264]
 gi|218159083|gb|ACK59075.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264]
          Length = 299

 Score = 39.3 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ + T ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIFALREKGLLEEKSNLTIETKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSAEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|126463923|ref|YP_001045036.1| proline racemase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105734|gb|ABN78264.1| proline racemase [Rhodobacter sphaeroides ATCC 17029]
          Length = 337

 Score = 39.3 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +++ R   +        AL  +   H D   + +        DA +  I  DG E    C
Sbjct: 34  ILEKRAFLEENYDWLRKALMREPRGHADMFGVFLTPPSSRDYDAGLIYI--DGKEYSHMC 91

Query: 78  GNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAKE-NRDGSI 116
           G+G   V                     FET  G++VA+  + D  +
Sbjct: 92  GHGTIAVAMAMVANGLVARDPSGLTRIRFETTAGLVVAEVAHEDDRV 138


>gi|290561347|gb|ADD38074.1| Phenazine biosynthesis-like domain-containing protein
           [Lepeophtheirus salmonis]
          Length = 242

 Score = 39.3 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 19/114 (16%)

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLL---AKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
           GNP A+  ++ D+         + +       +  + VN       S     +R W    
Sbjct: 19  GNPAAVVLLKSDIEDSFKQKIASEIKLSETAFVLCKNVN-DFV---SENEFYIR-W---- 69

Query: 220 GLTAA-----CGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFM 267
             T +     CG A  AS        K    +S + +GG  L +E  ++ ++ M
Sbjct: 70  -FTPSNEVPLCGHATLASAAVLFYRKKNKNKLSFETMGGDELHVELENDGYISM 122


>gi|154252581|ref|YP_001413405.1| PhzF family phenazine biosynthesis protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156531|gb|ABS63748.1| phenazine biosynthesis protein PhzF family [Parvibaculum
           lavamentivorans DS-1]
          Length = 263

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 20/135 (14%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG 114
                  +R       EV  CG+        L + +   +    FET  G LV K   D 
Sbjct: 52  SEGEGYRLRWFTPT-VEVDLCGHATLASAHVLFTHLGYAKPEIRFETRSGTLVVKREGD- 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              + M  P    K +P      ++      +G    L+L+   ++      A+F   DD
Sbjct: 110 --RLAMDFPAAKPKPLPAPNGIAEV------LGAKPLLWLKTSNLM------AVFDSADD 155

Query: 175 LYHY--DLASFGNLL 187
           +     D  + G LL
Sbjct: 156 VAALKPDFPALGRLL 170


>gi|322369934|ref|ZP_08044496.1| phenazine biosynthesis protein PhzF family [Haladaptatus
           paucihalophilus DX253]
 gi|320550270|gb|EFW91922.1| phenazine biosynthesis protein PhzF family [Haladaptatus
           paucihalophilus DX253]
          Length = 307

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 15/150 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D++T+D + A++ + +       +    +    D  +R      +E+  CG+    V   
Sbjct: 29  DDLTADQMQAIARELSVSETAFFV----ESEDADRRVRFFTPT-TEIDLCGHAT--VASH 81

Query: 88  LT----SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDR 143
           +      R++  +   ET  G+L  +   DG++ +   +P ++   I   R    +  D 
Sbjct: 82  VHLLEDDRIEPGTHALETNVGVLDIEVETDGTVWMTQDDPDVEPVDIEYERLGAALGIDP 141

Query: 144 FHIGPVNHLFLRNPFVV-SMGNPHAIFFVE 172
             +  V       P  V S G P  I  V 
Sbjct: 142 AALRDVGEDL---PLAVSSTGLPILIVPVN 168


>gi|298241672|ref|ZP_06965479.1| 4-hydroxyproline epimerase [Ktedonobacter racemifer DSM 44963]
 gi|297554726|gb|EFH88590.1| 4-hydroxyproline epimerase [Ktedonobacter racemifer DSM 44963]
          Length = 316

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99
              D ++  L+    D    A +   N   S +  CG+G   +V  L    R++      
Sbjct: 55  RGSDVLVGALLCQPVDPRCSAGVIYFNN-VSYLGMCGHGTIGLVATLAHLGRIQPGRHLI 113

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  GI+  + + DG ++V
Sbjct: 114 ETPVGIVTTELHEDGRVTV 132


>gi|172062263|ref|YP_001809914.1| proline racemase [Burkholderia ambifaria MC40-6]
 gi|171994780|gb|ACB65698.1| proline racemase [Burkholderia ambifaria MC40-6]
          Length = 348

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 44/271 (16%)

Query: 26  CHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRC 83
            H N   D++  L   +     Q+   L+         A   ++  D +     G+   C
Sbjct: 39  NHINEIDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAQAGFIVLQADKAHP-MSGSNCIC 97

Query: 84  VVRFLTSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLA 133
           VV  L             +   +T  G++ A+   RDG    +S+DM    ++   + + 
Sbjct: 98  VVTALLELGMVPMQEPETTVVLDTPAGLVTARAACRDGRCVGVSLDMVPSFVEHLDVDVH 157

Query: 134 RSFDKMDRDRFHIGPVNHLFL---RNPFVVSMGNP-----HAIFFVEDDLYHYDLASFGN 185
            +     +     G V +  +   +    ++ GN      H +   E       +     
Sbjct: 158 TAEFGTIKADIAFGGVYYALVDVDQIGLDIAPGNARQLATHGVRLKEIINRQVAV----- 212

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAACASVVASG 237
              +HP++ E +N  +A V     +D   ++        R V  +  CG+ + A++    
Sbjct: 213 ---QHPLYPE-IN-EVAYVMFRNRVDDTVYQTCTTLPPGR-VDRSP-CGTGSSANLATLA 265

Query: 238 CLHKT---NRAVSVKMLGGGLLIEWHDNNHV 265
              +    +R  S   +GG   +E      V
Sbjct: 266 ARGRVQVGDRLTSRSTIGGEFRVELLGTTEV 296


>gi|92114823|ref|YP_574751.1| proline racemase [Chromohalobacter salexigens DSM 3043]
 gi|91797913|gb|ABE60052.1| proline racemase [Chromohalobacter salexigens DSM 3043]
          Length = 311

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 22  DMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           D R  H     DA       +    D ++  L    + +     +   N  G     CG+
Sbjct: 37  DFRDNH-----DAWRRAIMLEPRGHDVLVGALYCAPESSDASCGVIFFNNSGYLG-MCGH 90

Query: 80  GMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV 118
           G   +V  L    +        +T  G + A  + DG+++V
Sbjct: 91  GTIGLVASLHHLGQLTPGCHKIDTPAGPVSATLHDDGAVTV 131


>gi|206975520|ref|ZP_03236433.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           H3081.97]
 gi|206746422|gb|EDZ57816.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           H3081.97]
          Length = 299

 Score = 39.3 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV----AK 109
               D  +R     G E+  CG+G    +  L  +     + + T ET  GIL      K
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIETKAGILPIQIGVK 112

Query: 110 ENRDGSISVDMGEPILD---WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           EN +  I +    P           LA S      D     P+ +    N  V+
Sbjct: 113 ENGEAFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|304408425|ref|ZP_07390071.1| phenazine biosynthesis protein PhzF family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342610|gb|EFM08458.1| phenazine biosynthesis protein PhzF family [Paenibacillus
           curdlanolyticus YK9]
          Length = 293

 Score = 39.3 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++     +++T + +  ++      F++            D  IR     G E+  CG
Sbjct: 24  VVLNG----EHLTEEQMLQVAAA--VGFNETAF--PLPSDRADWRIRFFTP-GHEISLCG 74

Query: 79  NGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           +     +  L +R       + T ET  GIL  + +         G  I   +  P   S
Sbjct: 75  HATMATIYALKTRGLLGDLTTLTIETKAGILSIQLDEREE-----GLFITMQQAAPQFAS 129

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVV---SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
           F+       +   ++   +     V   S G    I  V+       LA+   +  ++ +
Sbjct: 130 FNGSIAQLAYAMGIDQEDIATELPVVYGSTGTWTLIIPVKG------LAACERMKPRNEL 183

Query: 193 FS 194
           F 
Sbjct: 184 FP 185


>gi|126348589|emb|CAJ90313.1| putative phenazine biosynthesis protein [Streptomyces ambofaciens
           ATCC 23877]
          Length = 269

 Score = 39.0 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
            +    D  +R      +EV  CG+        L +    +    F T  G+LVA    D
Sbjct: 52  PEGGEADWALRWFTP-VTEVSLCGHATLAAAHVLHTTGAHEGPVRFATRGGVLVATPRED 110

Query: 114 GSISVDMGEPILDWKLIPLA 133
           GSI++D     L     P  
Sbjct: 111 GSITLDFPTAPLTPVEPPTG 130


>gi|283477561|emb|CAY73477.1| Proline racemase family protein [Erwinia pyrifoliae DSM 12163]
          Length = 309

 Score = 39.0 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106
           L+         A +   N  G     CG+G     R +      ++       ET  G +
Sbjct: 63  LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119

Query: 107 VAKENRDGSISV 118
           +A  ++D S+SV
Sbjct: 120 LAVLHQDLSVSV 131


>gi|209522196|ref|ZP_03270836.1| proline racemase [Burkholderia sp. H160]
 gi|209497369|gb|EDZ97584.1| proline racemase [Burkholderia sp. H160]
          Length = 322

 Score = 39.0 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99
              D ++  L+ +  D +  A +   N  G     CG+G   +V  L    R+       
Sbjct: 57  RGSDVVVGALLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIGPGRHRI 115

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  G++ A  N DGS++V
Sbjct: 116 ETPVGVVEATLNEDGSVAV 134


>gi|326780616|ref|ZP_08239881.1| phenazine biosynthesis protein PhzF family [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660949|gb|EGE45795.1| phenazine biosynthesis protein PhzF family [Streptomyces cf.
           griseus XylebKG-1]
          Length = 273

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
               + D  +R      +EV  CG+        L +  +      F    GIL A  + D
Sbjct: 54  PPGGTADWALRWFTP-ATEVDMCGHATLAAAHVLHTTDLATGPVRFAARCGILTATAHPD 112

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
           GS+++D     L  + +P   + D +  D   +       
Sbjct: 113 GSLTLDFPTSPLTEEPVPYGLA-DALGADPVSVHDTGEHI 151


>gi|307544144|ref|YP_003896623.1| proline racemase [Halomonas elongata DSM 2581]
 gi|307216168|emb|CBV41438.1| proline racemase [Halomonas elongata DSM 2581]
          Length = 312

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D        +    D ++  L+ + +       +   N  G     CG+G   +V  L  
Sbjct: 43  DRWRTACMLEPRGHDVLVGALLCEPETPEATCGVIFFNNSGYLG-MCGHGTIGLVASLAH 101

Query: 91  RMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
             +        +T  G + A+ + DGS++V         + +PL   
Sbjct: 102 HGRLAPGLHHIDTPVGAIEAQLHEDGSVTVRNVPAYRYRRAVPLEVP 148


>gi|282866494|ref|ZP_06275538.1| phenazine biosynthesis protein PhzF family [Streptomyces sp. ACTE]
 gi|282558706|gb|EFB64264.1| phenazine biosynthesis protein PhzF family [Streptomyces sp. ACTE]
          Length = 293

 Score = 39.0 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 81/303 (26%)

Query: 20  VIDM-RGCHDNITSDAINALSTDDNTHFDQI------------MLIHD-FQDASVDAFIR 65
           ++D             +  L +D     D++               H        D  +R
Sbjct: 25  IVDAFTDRPFAGNPAGVLLLESDRFPGPDRLQRVAAEVNLSETAFAHPLPPGGQADWALR 84

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
                 +EV  CG+        L +  +   +  F +  G+L    ++DGS+++D     
Sbjct: 85  WFTPT-TEVDLCGHATLAAAHVLRTTGVAEGTVRFASRSGVLRTTAHQDGSLTLDFPTAP 143

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L     P   + + +      +              ++G+              +LA   
Sbjct: 144 LTPVTAPPGLA-EALGAVPLSVHDTGD---------NVGD-----------LLVELADEA 182

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG------------------ 226
            + A  P F   V        S          RGV  TAA G                  
Sbjct: 183 AVRALRPDFPSLV------ACSR---------RGVIATAAAGDPSDGYDFVSRGFFPRVG 227

Query: 227 ------SAACASVVA---SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
                 + +  + +A   S    +T+   +      G +          ++TG+A    E
Sbjct: 228 IDEDPVTGSAHTALAPFWSARFGRTDLTGLQASARSGLVRTSLR-GERTWLTGQAVTVIE 286

Query: 277 GKL 279
           G+L
Sbjct: 287 GEL 289


>gi|229491382|ref|ZP_04385206.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus
           erythropolis SK121]
 gi|229321667|gb|EEN87464.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus
           erythropolis SK121]
          Length = 329

 Score = 39.0 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 37/281 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD-AFIRIINCDGSEVQSC 77
           +V+D RG  D+        +   +        LI      +   + IR  +   +EV  C
Sbjct: 65  VVLDARGLDDSELQSVAAEIGYAETA-----FLIEPALGGNPRHSRIRYFSPI-AEVPFC 118

Query: 78  GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
           G+        LT R    +FTFET  G +      D   +       ++  + P+  +  
Sbjct: 119 GHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGTSTATFTSVEPSVSPIDHAVL 178

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
                   +            +   GN H I  V  D   +D  +F     +  M ++G 
Sbjct: 179 TALLGLIGVDSSALDARYPAMLSYAGNTHPIV-VLRDQSTFDEFTFDPSAMRTLMDAQGW 237

Query: 198 --NLSIARVTSLESLDLR-------TWERGVGLTAACGSAACASVVASGCLHK----TNR 244
              ++I       + + R         E          + + A+             T R
Sbjct: 238 AGTVTILHPLDDNTFEARNLFPVGNIVEDPA-------TGSAAASTGGYLRKLEPAATPR 290

Query: 245 AVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278
            +++    G        L +E   +  + +TG A    +G+
Sbjct: 291 RITIHQ--GRHVGRPSVLAVEIPVDGGISVTGTAVPVVDGQ 329


>gi|312173214|emb|CBX81469.1| Proline racemase [Erwinia amylovora ATCC BAA-2158]
          Length = 309

 Score = 39.0 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106
           L+         A +   N  G     CG+G     R +      ++       ET  G +
Sbjct: 63  LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119

Query: 107 VAKENRDGSISV 118
           +A  ++D ++SV
Sbjct: 120 LAVLHQDLTVSV 131


>gi|307727295|ref|YP_003910508.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1003]
 gi|307587820|gb|ADN61217.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1003]
          Length = 318

 Score = 39.0 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99
              D ++  L+ +  D S  A +   N  G     CG+G   +V  L    R+       
Sbjct: 57  RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  G++ A  N DGS++V
Sbjct: 116 ETPVGVVEATLNEDGSVAV 134


>gi|17542154|ref|NP_502386.1| hypothetical protein T04A11.2 [Caenorhabditis elegans]
 gi|17542160|ref|NP_502389.1| hypothetical protein T04A11.5 [Caenorhabditis elegans]
 gi|3879387|emb|CAB05607.1| C. elegans predicted protein T04A11.2 [Caenorhabditis elegans]
 gi|3879388|emb|CAB05608.1| C. elegans predicted protein T04A11.5 [Caenorhabditis elegans]
          Length = 316

 Score = 39.0 bits (90), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +R      +EV  CG+        L + +    K   F+T  G+L+AK +  G+  V+
Sbjct: 66  FSLRWFTP-KTEVPLCGHATLATSHVLFNEVGNVNKEIKFDTQSGVLIAKRDEKGN--VE 122

Query: 120 MGEPILDWKLI-------PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           M  P  D   +       PL   F + +   F    +  +      + S+
Sbjct: 123 MNFPEYDLASVKFNDTPNPLQGIFSEFEAPSFLFEVIKCVVPTEMIIESV 172


>gi|170696220|ref|ZP_02887353.1| proline racemase [Burkholderia graminis C4D1M]
 gi|170138864|gb|EDT07059.1| proline racemase [Burkholderia graminis C4D1M]
          Length = 318

 Score = 39.0 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99
              D ++  L+ +  D S  A +   N  G     CG+G   +V  L    R+       
Sbjct: 57  RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  G++ A  N DGS++V
Sbjct: 116 ETPVGVVEATLNDDGSVAV 134


>gi|296156443|ref|ZP_06839281.1| 4-hydroxyproline epimerase [Burkholderia sp. Ch1-1]
 gi|295893042|gb|EFG72822.1| 4-hydroxyproline epimerase [Burkholderia sp. Ch1-1]
          Length = 318

 Score = 39.0 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +  D +  A +   N  G     CG+G   +V  L    R+K      ET  G++ A
Sbjct: 66  LLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIKPGRHRIETPVGVVEA 124

Query: 109 KENRDGSISV 118
             N DGS++V
Sbjct: 125 TLNEDGSVAV 134


>gi|292489059|ref|YP_003531946.1| proline racemase [Erwinia amylovora CFBP1430]
 gi|292900187|ref|YP_003539556.1| proline racemase [Erwinia amylovora ATCC 49946]
 gi|291200035|emb|CBJ47160.1| putative proline racemase [Erwinia amylovora ATCC 49946]
 gi|291554493|emb|CBA22032.1| Proline racemase [Erwinia amylovora CFBP1430]
          Length = 309

 Score = 39.0 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGM----RCVVRFLTSRMKRKSFTFETIRGIL 106
           L+         A +   N  G     CG+G     R +      ++       ET  G +
Sbjct: 63  LLCPPVSPDACAGVIFFNNSGYLG-MCGHGTIGLVRSLAW--MGKISPGEHKIETPVGDV 119

Query: 107 VAKENRDGSISV 118
           +A  ++D ++SV
Sbjct: 120 LAVLHQDLTVSV 131


>gi|184157646|ref|YP_001845985.1| proline racemase [Acinetobacter baumannii ACICU]
 gi|332872957|ref|ZP_08440919.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6014059]
 gi|183209240|gb|ACC56638.1| Proline racemase [Acinetobacter baumannii ACICU]
 gi|322507954|gb|ADX03408.1| proline racemase [Acinetobacter baumannii 1656-2]
 gi|323517545|gb|ADX91926.1| proline racemase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738860|gb|EGJ69725.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6014059]
          Length = 310

 Score = 39.0 bits (90), Expect = 0.97,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 72/255 (28%), Gaps = 51/255 (20%)

Query: 13  GIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIIN 68
           G G      DM      ++   D     +  +    D ++  L+    +    A +   N
Sbjct: 27  GTG------DMESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFN 80

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILD 126
             G     CG+G   +V  L    K +  T   ET  G + A  + D S+SV        
Sbjct: 81  NTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV-------- 131

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--- 183
            + +P  R    ++ +    G V            + N H      D+L      ++   
Sbjct: 132 -RNVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVR 190

Query: 184 ------------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSA 228
                       G  +    +F+        +              ++R       CG+ 
Sbjct: 191 QALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTG 239

Query: 229 ACASVVASGCLHKTN 243
             A +       K  
Sbjct: 240 TSAKIACLAADGKLE 254


>gi|91779222|ref|YP_554430.1| putative proline racemase [Burkholderia xenovorans LB400]
 gi|91691882|gb|ABE35080.1| putative proline racemase [Burkholderia xenovorans LB400]
          Length = 318

 Score = 38.6 bits (89), Expect = 1.00,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +  D +  A +   N  G     CG+G   +V  L    R+       ET  G++ A
Sbjct: 66  LLCEPDDPTCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHLGRIGPGRHRIETPVGVVEA 124

Query: 109 KENRDGSISV 118
             N DGS++V
Sbjct: 125 TLNEDGSVAV 134


>gi|226306081|ref|YP_002766041.1| phenazine biosynthesis protein [Rhodococcus erythropolis PR4]
 gi|226185198|dbj|BAH33302.1| putative phenazine biosynthesis protein [Rhodococcus erythropolis
           PR4]
          Length = 289

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 39/282 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV--DAFIRIINCDGSEVQS 76
           +++D RG  D    +  +  +      + +   + + +       + IR  +   +EV  
Sbjct: 25  VLLDARGLDD---PELQSVAAE---VGYAETAFLIEPELGGNPRHSRIRYFSPI-AEVPF 77

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           CG+        LT R    +FTFET  G +      D           ++  + P+  + 
Sbjct: 78  CGHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGRSTATFISVEPSVSPIDHAV 137

Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196
                    +            +   GN H I  V  D   +D  +F  +  +  M ++G
Sbjct: 138 LTALLGLIGVDSSALDARYPAMLSYAGNTHPIV-VLRDQSTFDEFTFDPVAMRTLMDAQG 196

Query: 197 V--NLSIARVTSLESLDLR-------TWERGVGLTAACGSAACASVVASGCLHK----TN 243
               ++I       + + R         E          + + A+             T 
Sbjct: 197 WAGTVTILHPLDDNTFEARNLFPVGNIVEDPA-------TGSAAASTGGYLRKLEPAATP 249

Query: 244 RAVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278
           R +++    G        L ++   +  + +TG A    +G+
Sbjct: 250 RRITIHQ--GRHVGRPSVLEVDIPVDGGISVTGTAVPVVDGQ 289


>gi|322382280|ref|ZP_08056190.1| isomerase-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153782|gb|EFX46153.1| isomerase-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 341

 Score = 38.6 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 18  ILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
             VI  +G    +   A    + D         F++   +     AS     R     G 
Sbjct: 53  FSVISNKGNPAGVVLHADGLCAEDMQQIARQVGFNETSFVLKSDVAS--FRFRYFTP-GH 109

Query: 73  EVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128
           E+  CG+     V  L  +    + +  + ET  GIL  + +       + M +   + K
Sbjct: 110 EMDLCGHATVATVFCLKRQGLLPEVEELSVETKAGILKIRVSDTEQGFFIHMQQA--EPK 167

Query: 129 LIPLARSFDKM 139
            IP   S D +
Sbjct: 168 FIPYEGSIDAL 178


>gi|329113618|ref|ZP_08242397.1| Putative isomerase [Acetobacter pomorum DM001]
 gi|326697064|gb|EGE48726.1| Putative isomerase [Acetobacter pomorum DM001]
          Length = 304

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 40/283 (14%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     D+I ++ +  ++ + N    + + I        D   RI     +E+   G
Sbjct: 32  VVFDA----DDIPTETMQKIAREMN--LSETVFILKPSTPEADYRARIFTP-MNELPFAG 84

Query: 79  N-----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWKLIPL 132
           +         + R+   +        E   G++  +  R  + + + M +    ++   L
Sbjct: 85  HPTIAAAHSVLARY-PDKANASLLKQECGIGVVPVEVLRSPAGLRLRMTQGAPTYRDTAL 143

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH-- 190
           +R               N  F     VVS G P  +  +        L     L+ +   
Sbjct: 144 SRETVAKMLGCSEADLANTPFE----VVSTGVPWLVVELSRFATISALVPDQGLIERECK 199

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS--AACASVVASGCLHKT 242
            + + GV  +         + +R   R      GV     CGS   + A+ +A       
Sbjct: 200 AVRAAGV-TTFVERNDDGPVRIRV--RTFAPGEGVAEDPVCGSGNGSVAAFIARHKHADQ 256

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK-LDIKTG 284
                V   G    IE   +  V+    A  + EG+ L I+ G
Sbjct: 257 KSGHYVAEQG----IEIERDGEVY----ASWDSEGETLRIRIG 291


>gi|196229963|ref|ZP_03128827.1| proline racemase [Chthoniobacter flavus Ellin428]
 gi|196226289|gb|EDY20795.1| proline racemase [Chthoniobacter flavus Ellin428]
          Length = 308

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 58/211 (27%), Gaps = 33/211 (15%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +  D S    I   N  G     CG+G   VV  L    ++       ET  GI+ A
Sbjct: 63  LLCEPSDPSCSVGIIFFNNIGYLG-MCGHGTIGVVATLAHLGKIGDGQLRIETPVGIIDA 121

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +  G  S          K I L      +      +G V           S   P   
Sbjct: 122 TWHGKGRASCANVPSYRLAKDIRL-----DVPGLGVVVGDVAWGGNWFFLTKSNTGP--- 173

Query: 169 FFVEDDLYHY-DLASFGNLLAKHPMFSEGVNLSIA-----------RVTSLESLDLRTWE 216
             V +D+    D+A     +     F E  ++               V        R ++
Sbjct: 174 -LVLNDVERLTDIAWRIRKILNTSGFPEVDHVEFYGDPQCGGDSRNFVLCPG----RAYD 228

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVS 247
           R       CG+   A +            V 
Sbjct: 229 RSP-----CGTGTSAKLACLAADGMLPEGVE 254


>gi|325121735|gb|ADY81258.1| hypothetical protein BDGL_000672 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 310

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 41/213 (19%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108
           L+    ++   A +   N  G     CG+G   +V  L    K +  T   ET  G + A
Sbjct: 63  LLCKPMNSKASAGVIFFNNTGYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEA 121

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             + D S+SV         + +P  R    ++ +    G V            + N H+ 
Sbjct: 122 TLHEDHSVSV---------RNVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHSQ 172

Query: 169 FFVEDDLYHYDLASF---------------GNLLAKHPMFSEGVNL---SIARVTSLESL 210
               D+L      ++               G  +    +F+        +          
Sbjct: 173 RVASDNLDQLTDYAWTVRQALTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA-- 230

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
               ++R       CG+   A +       K  
Sbjct: 231 ----YDRSP-----CGTGTSAKIACLAADGKLE 254


>gi|325569691|ref|ZP_08145738.1| PhzF family phenazine biosynthesis protein [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157247|gb|EGC69412.1| PhzF family phenazine biosynthesis protein [Enterococcus
           casseliflavus ATCC 12755]
          Length = 285

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
              +T     A++ +    F +   +   +    D           EV  CG+    +  
Sbjct: 27  EQPLTPQQKLAVAKE--LGFSETAFL--SKSPQADFRFDYFTP-KEEVDLCGHAT--IAS 79

Query: 87  FL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           F      +++ R+ +  +T  G L     +DG I ++  +P+  
Sbjct: 80  FALLSYLNKLSRQQYRIDTNAGRLSITI-KDGVIFMEQNKPLFS 122


>gi|282890154|ref|ZP_06298685.1| hypothetical protein pah_c013o066 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500005|gb|EFB42293.1| hypothetical protein pah_c013o066 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 298

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRKSFTFETIRGILVAK 109
           +    D  +R     G+E++ CG+     +  +           +  FT ET  GIL  +
Sbjct: 53  KSEKADFRLRFFTPPGNEIKFCGHATVGALNTIAHEGLYGCTEAKNFFTIETNAGILDVE 112

Query: 110 EN 111
            +
Sbjct: 113 ID 114


>gi|255527773|ref|ZP_05394625.1| phenazine biosynthesis protein PhzF family [Clostridium
           carboxidivorans P7]
 gi|296186950|ref|ZP_06855350.1| phenazine biosynthesis protein PhzF family protein [Clostridium
           carboxidivorans P7]
 gi|255508524|gb|EET84912.1| phenazine biosynthesis protein PhzF family [Clostridium
           carboxidivorans P7]
 gi|296048388|gb|EFG87822.1| phenazine biosynthesis protein PhzF family protein [Clostridium
           carboxidivorans P7]
          Length = 289

 Score = 38.6 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 44  THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFET 101
             F +   I     A  D  I     +  EV  CG+        L S+   KS  +T ET
Sbjct: 42  VGFSETAFIKKSNKA--DFKINFFTPN-KEVDLCGHATIGTFYLLASKGIIKSGQYTQET 98

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             GIL  +   +  I ++  +P      +P          D  +I     +      +VS
Sbjct: 99  KAGILKVECRNNNMIYMNQMKPKF--YEVPNKAD----IADSLNIDEEEIMSDIPIQIVS 152

Query: 162 MG 163
            G
Sbjct: 153 TG 154


>gi|169796424|ref|YP_001714217.1| putative proline racemase [Acinetobacter baumannii AYE]
 gi|213156463|ref|YP_002318883.1| proline racemase [Acinetobacter baumannii AB0057]
 gi|215483887|ref|YP_002326112.1| proline racemase [Acinetobacter baumannii AB307-0294]
 gi|301347231|ref|ZP_07227972.1| proline racemase [Acinetobacter baumannii AB056]
 gi|301513199|ref|ZP_07238436.1| proline racemase [Acinetobacter baumannii AB058]
 gi|301597011|ref|ZP_07242019.1| proline racemase [Acinetobacter baumannii AB059]
 gi|332855293|ref|ZP_08435798.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013150]
 gi|332871628|ref|ZP_08440101.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013113]
 gi|169149351|emb|CAM87235.1| conserved hypothetical protein; putative proline racemase
           [Acinetobacter baumannii AYE]
 gi|213055623|gb|ACJ40525.1| proline racemase [Acinetobacter baumannii AB0057]
 gi|213986794|gb|ACJ57093.1| proline racemase [Acinetobacter baumannii AB307-0294]
 gi|332727517|gb|EGJ58941.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013150]
 gi|332731318|gb|EGJ62613.1| 4-hydroxyproline epimerase [Acinetobacter baumannii 6013113]
          Length = 310

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 47/253 (18%)

Query: 13  GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCD 70
           G G+    I+ R    +   D     +  +    D ++  L+    +    A +   N  
Sbjct: 27  GTGD----IESRRKILSEQYDHFRRATMLEPRGNDVLVGALLCKPVNPKASAGVIFFNNT 82

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDWK 128
           G     CG+G   +V  L    K +  T   ET  G + A  + D S+SV         +
Sbjct: 83  GYLG-MCGHGTIGLVASLAHLGKIQVGTHLIETPVGDVEATLHEDHSVSV---------R 132

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF----- 183
            +P  R    ++ +    G V            + N H      D+L      ++     
Sbjct: 133 NVPAYRYKKAVEVNVEKYGKVTGDIAWGGNWFFLINDHGQRVASDNLDQLTEYAWTVRQA 192

Query: 184 ----------GNLLAKHPMFSEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAAC 230
                     G  +    +F+        +              ++R       CG+   
Sbjct: 193 LTAQGITGKDGQEIDHIELFASDTEADSKNFVLCPGKA------YDRSP-----CGTGTS 241

Query: 231 ASVVASGCLHKTN 243
           A +       K  
Sbjct: 242 AKIACLAADGKLE 254


>gi|183598974|ref|ZP_02960467.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827]
 gi|188021191|gb|EDU59231.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827]
          Length = 316

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTF 99
              D ++  L+   Q+    A +   N +G     CG+G +  +        +     T 
Sbjct: 58  RGSDILVGALLCKPQNPQATAGVIFFNNEGYLG-MCGHGTIGLIASLAYLGTITVGEHTI 116

Query: 100 ETIRGILVAKENRDGSISVD 119
           ET  G + A  + DGS+S+ 
Sbjct: 117 ETPVGDVQATLHPDGSVSIQ 136


>gi|255026234|ref|ZP_05298220.1| hypothetical protein LmonocytFSL_07555 [Listeria monocytogenes FSL
           J2-003]
          Length = 282

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRD 113
           +    D  +        EV  CG+        L    ++ +  +T ET  G+L     +D
Sbjct: 52  ESNHADFKLEYFTP-KEEVDLCGHATIGTFTILMHLNKIHKSRYTIETNSGVLTITI-KD 109

Query: 114 GSISVDMGEPILDWKLIP 131
           G+I ++  +P   + +IP
Sbjct: 110 GTIFMEQNQPTF-YDIIP 126


>gi|261343896|ref|ZP_05971541.1| putative epimerase [Providencia rustigianii DSM 4541]
 gi|282568282|gb|EFB73817.1| putative epimerase [Providencia rustigianii DSM 4541]
          Length = 316

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
           L+    +    A +   N +G     CG+G   +V  L    R+       ET  G + A
Sbjct: 67  LLCQPVNPKAAAGVIFFNNEGYLG-MCGHGTIGLVASLHHMGRISYGEHLIETPVGDVTA 125

Query: 109 KENRDGSISVD 119
           K + DGS+S+ 
Sbjct: 126 KLHEDGSVSIQ 136


>gi|220678692|emb|CAX13877.1| novel protein similar to vertebrate phenazine biosynthesis-like
           protein domain containing (PBLD, zgc:112210) [Danio
           rerio]
          Length = 286

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + +  +V+A     K  +           GG L +E  D+  + +TGEA+   +G L I
Sbjct: 228 TGSAHTVLAGYWSEKLKKKKMLAYQCSSRGGELKLEIRDDGRLDITGEAQIILQGTLKI 286


>gi|66773120|ref|NP_001019582.1| MAWD binding protein like [Danio rerio]
 gi|166158304|ref|NP_001107317.1| hypothetical protein LOC100135119 [Xenopus (Silurana) tropicalis]
 gi|66267501|gb|AAH95689.1| Zgc:112210 [Danio rerio]
 gi|157423261|gb|AAI53410.1| Zgc:112210 [Danio rerio]
 gi|161611702|gb|AAI55871.1| LOC100135119 protein [Xenopus (Silurana) tropicalis]
          Length = 286

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + +  +V+A     K  +           GG L +E  D+  + +TGEA+   +G L I
Sbjct: 228 TGSAHTVLAGYWSEKLKKKKMLAYQCSSRGGELKLEIRDDGRLDITGEAQIILQGTLKI 286


>gi|328881005|emb|CCA54244.1| Phenazine biosynthesis protein PhzF [Streptomyces venezuelae ATCC
           10712]
          Length = 269

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L S      S  F    GIL A    D
Sbjct: 52  PAGGEADWALRWFTPT-TEVDMCGHATLATAHVLHSTGAATGSIRFAARCGILGATAEAD 110

Query: 114 GSISVDMGEPILDWKLIPLARSFDK 138
           G+I+  M  P      +P+    +K
Sbjct: 111 GTIT--MDFPTSSLTPVPVPAGLEK 133


>gi|298293153|ref|YP_003695092.1| Proline racemase [Starkeya novella DSM 506]
 gi|296929664|gb|ADH90473.1| Proline racemase [Starkeya novella DSM 506]
          Length = 337

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSE-VQSC 77
           +I+ R   +        AL  +   H D   + +        DA +  I  DG++    C
Sbjct: 34  IIEKRAFLEENYDWVREALMREPRGHRDMFGVFLTPPSSRDYDAGLIYI--DGTQYSHMC 91

Query: 78  GNGMRCVVRFLTSRM-------KRKSFTFETIRGILVAKENRDG 114
           G+G   V   + +               FET  G++ A+   DG
Sbjct: 92  GHGTIAVAMAMVAHGMVRRSDDGITKIRFETTAGLVQAEVATDG 135


>gi|323357770|ref|YP_004224166.1| epimerase, PhzC/PhzF homolog [Microbacterium testaceum StLB037]
 gi|323274141|dbj|BAJ74286.1| predicted epimerase, PhzC/PhzF homolog [Microbacterium testaceum
           StLB037]
          Length = 296

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 52/173 (30%), Gaps = 16/173 (9%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDN---THFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75
           +++D R     +    +  ++TD     T F         +       +R  + D  EVQ
Sbjct: 35  VILDARA----LDDAQMQRIATDLGHPETAFVG-------EREGRRVAVRYFSPD-DEVQ 82

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            CG+        L       ++TFET  G +      +G   +  G   ++  ++ L   
Sbjct: 83  FCGHATIATAVALAEAEGVGAYTFETAAGAVEVVTETEGE-RIIAGFTSVEPHVVDLEDV 141

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                 D   +   +            GN H I  V            G  L 
Sbjct: 142 VADRLLDLLGLTRADLDERMPLAQAFAGNLHPIVAVASRDTFDAFTFEGPRLR 194


>gi|270261283|ref|ZP_06189556.1| proline racemase [Serratia odorifera 4Rx13]
 gi|270044767|gb|EFA17858.1| proline racemase [Serratia odorifera 4Rx13]
          Length = 315

 Score = 38.2 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNG-MRCVVRFLT-SRMKRKSFTFETIRGILVA 108
           L+         A +   N  G     CG+G +  V       R+       ET  G + A
Sbjct: 69  LLCQPCSPQAAAGVIFFNNAGYLG-MCGHGTIGLVASLAYLGRISAGEHLIETPVGTVNA 127

Query: 109 KENRDGSISVD 119
             ++DGS++V+
Sbjct: 128 TLHQDGSVTVE 138


>gi|221197504|ref|ZP_03570551.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans
           CGD2M]
 gi|221204177|ref|ZP_03577195.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans
           CGD2]
 gi|221176343|gb|EEE08772.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans
           CGD2]
 gi|221184058|gb|EEE16458.1| proline racemase B (tcpracb) (tcpa45-b) [Burkholderia multivorans
           CGD2M]
          Length = 348

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 90/272 (33%), Gaps = 56/272 (20%)

Query: 31  TSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
           T D++  L   +     Q+   L+         A   ++  D +     G+   CVV  L
Sbjct: 44  TDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFIVLQADKAHP-MSGSNCICVVTAL 102

Query: 89  TSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDK 138
                        +   +T  G++ A+ + RDG    +S+DM    ++   I +      
Sbjct: 103 LELGMVPMQEPETTVVLDTPAGLVTARADCRDGRCVGVSLDMVPSFVEHLDINVHTPEFG 162

Query: 139 MDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-------- 189
                   G V + L   +   +S+                 LA+ G  L +        
Sbjct: 163 TIPVDIAFGGVYYALVDVDRIGLSI----------APDNARQLATHGVRLREIINRQISV 212

Query: 190 -HPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAACASVVASGCLH 240
            HP+++E +N  +A V     +D   ++        R V  +  CG+ + A++       
Sbjct: 213 QHPLYAE-IN-EVAYVMFRNRIDDIVYQTCTTLPPGR-VDRSP-CGTGSSANLATLAARG 268

Query: 241 KTNRAVSV-------KMLGGGLLIEWHDNNHV 265
           +    V V         +GG   IE      V
Sbjct: 269 R----VQVGDCLTSRSTIGGEFRIELLGTTEV 296


>gi|21231852|ref|NP_637769.1| hypothetical protein XCC2415 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768021|ref|YP_242783.1| hypothetical protein XC_1697 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991146|ref|YP_001903156.1| hypothetical protein xccb100_1751 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113571|gb|AAM41693.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573353|gb|AAY48763.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732906|emb|CAP51102.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 312

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 22  DMRGCHDNITSDA---INALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQS 76
           D+  C +   SD     +A++ +     D ++  L+   +D S    +   N  G     
Sbjct: 30  DLAQCRERFRSDFDHWRSAIACEP-RGSDTMVGALLLPPRDPSACTGVIFFNNVGYLG-M 87

Query: 77  CGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           CG+G   VVR L    R+       ET  G +      DG++S+D
Sbjct: 88  CGHGTIGVVRTLAELGRIAPGQHRIETPVGTVGVALADDGTVSID 132


>gi|149909797|ref|ZP_01898448.1| Phenazine biosynthesis PhzC/PhzF protein [Moritella sp. PE36]
 gi|149807129|gb|EDM67085.1| Phenazine biosynthesis PhzC/PhzF protein [Moritella sp. PE36]
          Length = 280

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 26/220 (11%)

Query: 30  ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
                +  ++ D    F +   +   + +     +R  + + +EV  CG+        L 
Sbjct: 31  PEPKEMQRIAAD--VGFSETAFVAPSKGSKR--TVRYYSPE-AEVPFCGHATIATGVALG 85

Query: 90  SRMKRKSFTFETIRGILVAKENR-DGSISVDMG--EPILDWKLIPLARSFDKMDRDRFHI 146
            +    S+ FET  G +  + +  +G I   +   EP  +W    L +  D +    + +
Sbjct: 86  KQSGSGSYQFETTIGTIPVEVSEHNGEIRAALTSVEPKFEWPSEILLK--DTLAALGWSL 143

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
             ++      P     GN H +  V+      DL+     L K  +  +   L +    +
Sbjct: 144 DDLDTSIP--PARTFGGNWHLVLAVKSKQRLDDLSYDFEKLKKIMLDDDLTTLQLIWREN 201

Query: 207 LESLDLR-------TWERGVGLTAACGSAACASVVASGCL 239
            + +  R         E          + A A  +     
Sbjct: 202 DKLIHSRNPFPVGGVVEDSA-------TGAAAVALGGYLR 234


>gi|289803758|ref|ZP_06534387.1| hypothetical protein Salmonellaentericaenterica_04152 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 185

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|254477843|ref|ZP_05091228.1| phenazine biosynthesis protein, PhzF family [Ruegeria sp. R11]
 gi|214028428|gb|EEB69264.1| phenazine biosynthesis protein, PhzF family [Ruegeria sp. R11]
          Length = 298

 Score = 38.2 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 5/137 (3%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +R  + +G EV  CG+    + R L+       +      G +    + D S  
Sbjct: 61  DGDHWRVRYFSPEG-EVDFCGHATIALGRALSDLKGPARYDLRINAGDISVASHTDDSGK 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV--EDDL 175
             +       +  P   +        F +   +      P + + GN H +  +   D L
Sbjct: 120 TLIELQSPPTRSGPAEGAVLAEALALFDLSEEDLDPALPPAIANAGNDHLVLALRQRDRL 179

Query: 176 Y--HYDLASFGNLLAKH 190
               YDLA    L+ +H
Sbjct: 180 ARMEYDLADGRRLMERH 196


>gi|182439950|ref|YP_001827669.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178468466|dbj|BAG22986.1| putative oxidoreductase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 273

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
               + D  +R      +EV  CG+        L +  +      F    GIL A  + D
Sbjct: 54  PPGGTADWALRWFTP-ATEVDMCGHATLATAHVLHTTDLATGPVRFAARCGILTATAHPD 112

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLF 153
           GS+++D     L  + +P   + D +  D   +       
Sbjct: 113 GSLTLDFPTSPLTEEPVPYGLA-DALGADPVSVHDTGEHI 151


>gi|269863421|ref|XP_002651216.1| diaminopimelate epimerase [Enterocytozoon bieneusi H348]
 gi|220064933|gb|EED42839.1| diaminopimelate epimerase [Enterocytozoon bieneusi H348]
          Length = 167

 Score = 38.2 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 31  TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           T    NA +       D +++      A     + I+N DGS  +  GNG+      LT 
Sbjct: 55  TPRPANAKAHRC----DGLLV--GPFQAEPPFDLLIVNTDGSLAERIGNGVTIFAHALTG 108

Query: 91  RM 92
           + 
Sbjct: 109 QG 110


>gi|217072906|gb|ACJ84813.1| unknown [Medicago truncatula]
          Length = 292

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 225 CGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CGSA C      S  L K +         GG L I   +    VF+ G+A    EG +
Sbjct: 233 CGSAHCGLAPYWSKKLGKCDLKAYQASARGGILNIHIDEQKQRVFLRGKAVTVMEGSV 290


>gi|167567151|ref|ZP_02360067.1| proline racemase, putative [Burkholderia oklahomensis EO147]
 gi|167572197|ref|ZP_02365071.1| proline racemase, putative [Burkholderia oklahomensis C6786]
          Length = 310

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L+ +   A   A +   N  G     CG+G   +VR L  
Sbjct: 43  DRFRTACILEPRGSDVLVGALLCEPVAADAAAGVIFFNNAGYLG-MCGHGTIGLVRTLHH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+       ET  G + A  + D S+SV
Sbjct: 102 MGRIAPGVHRIETPVGDVEATLHDDLSVSV 131


>gi|302540660|ref|ZP_07293002.1| phenazine biosynthesis protein PhzF family protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458278|gb|EFL21371.1| phenazine biosynthesis protein PhzF family protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 271

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRD 113
            + A  D  +R +    +EV  CG+        L +      +  F T+ G+L A  + D
Sbjct: 54  PEGAEADWALRWLTP-ATEVSMCGHATLATAHVLRTTGAATGTVRFATLSGVLSAAGDPD 112

Query: 114 GSISVD 119
           G+I++D
Sbjct: 113 GTITLD 118


>gi|126725988|ref|ZP_01741830.1| phenazine biosynthesis protein, PhzF family [Rhodobacterales
           bacterium HTCC2150]
 gi|126705192|gb|EBA04283.1| phenazine biosynthesis protein, PhzF family [Rhodobacterales
           bacterium HTCC2150]
          Length = 293

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 16/126 (12%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM------KRKSFTFETIRGILVAKE 110
               D  +R    D  E+   G+     V  L  R           FT E   G++    
Sbjct: 53  SDIADFGVRYYLAD-KEIPMAGHPTIATVASLLDRGLIELQDGHADFTLEVGAGVMPINV 111

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           + D      M             R FD  D    +    N +   +P VVS G P  I  
Sbjct: 112 DGDQITMTQMAPV--------FGRKFDASDIADIYGLDANEIV-GSPQVVSTGTPFCIAV 162

Query: 171 VEDDLY 176
           V+D + 
Sbjct: 163 VKDKIA 168


>gi|290961965|ref|YP_003493147.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260651491|emb|CBG74613.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 269

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 41/242 (16%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L S         F T  G+L+A    D
Sbjct: 52  PPGGEADWALRWFTP-VAEVALCGHATLATAHVLNSTNAHEGPVRFATRSGVLLATPRPD 110

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           GS+++D     L    +P     + +  +  +              V  G P+    + +
Sbjct: 111 GSLTLDFPTAPLTPVAVPDGVG-EALGAEPLN-------------AVDTG-PNVGDLLVE 155

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-----G-- 226
                 +      L     +SE   ++ AR     +        G    + C     G  
Sbjct: 156 LADEKTVLGLAPDLRSLGRYSERGIIATARAEDPAA--------GYDYVSRCFFPNLGID 207

Query: 227 ----SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               + +  + +A     +        +      G +  E        ++G A    +G+
Sbjct: 208 EDPVTGSAHTALAPYWSARLGSPDLTGLQASPRSGRVRTELR-GGRTLLSGRAVTVIDGE 266

Query: 279 LD 280
           L 
Sbjct: 267 LT 268


>gi|313624597|gb|EFR94578.1| PhzF family phenazine biosynthesis protein [Listeria innocua FSL
           J1-023]
          Length = 282

 Score = 37.8 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111
                D  +        EV  CG+    +  F      +++ +  +T ET  GIL     
Sbjct: 52  DSKMADYKLEYFTP-KEEVDLCGHAT--IGSFAILMYLNKLHKNQYTIETNSGILTITL- 107

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG+I ++   P   + +IP     +  D +  +             +VS G    +  +
Sbjct: 108 KDGTIFMEQNRPNF-YDIIPPNELTECFDLNMIN-------TNYQVQIVSTGLKDILIPI 159

Query: 172 EDDLYHYDLASFGNLLA 188
           + ++  + L      + 
Sbjct: 160 KSEIDLHALEPNFEKIR 176


>gi|302533221|ref|ZP_07285563.1| oxidoreductase [Streptomyces sp. C]
 gi|302442116|gb|EFL13932.1| oxidoreductase [Streptomyces sp. C]
          Length = 272

 Score = 37.8 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 70/254 (27%), Gaps = 67/254 (26%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+           + + R    F    GIL A    D
Sbjct: 53  PPGGDADWALRWFTP-AAEVDMCGHATLATAHVIAAAGLARGPVRFAARCGILTADVAGD 111

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G++++D     L           D +      +G     F                    
Sbjct: 112 GTVTMDFPTSSLTP--------LDPVPAVERALGAPAKSFHDTA---------------- 147

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-ERGVGLT---------- 222
                     G+LL    +  E       R  + +   LR +  RGV +T          
Sbjct: 148 -------EHIGDLLV--ELADERT----VRELAPDHAALRAYARRGVIVTAPAEDPSRGY 194

Query: 223 --------AACG------SAACASVVASGCLHKTNRAVSVKMLGGG---LLIEWHDNNHV 265
                    A G      + +  + +A     +  R     + GG    L+      +  
Sbjct: 195 DFVSRGFFPAVGIDEDPVTGSAHTALAPFWAARLGRTELTGLQGGTRTGLVRVRLAGDRT 254

Query: 266 FMTGEAKKEWEGKL 279
            +TG A    +G+L
Sbjct: 255 LLTGRAVTVLDGEL 268


>gi|51491893|ref|NP_612539.2| phenazine biosynthesis-like domain-containing protein [Rattus
           norvegicus]
 gi|81884389|sp|Q68G31|PBLD_RAT RecName: Full=Phenazine biosynthesis-like domain-containing protein
 gi|51261154|gb|AAH78735.1| Phenazine biosynthesis-like protein domain containing [Rattus
           norvegicus]
 gi|149043908|gb|EDL97359.1| rCG60889, isoform CRA_a [Rattus norvegicus]
          Length = 288

 Score = 37.8 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 227 SAACASVVASGCLHKTN----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + +  +V++S    +      RA      GG L I    +  V M G A    EG L 
Sbjct: 230 TGSAHTVLSSYWSQQLGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGMLT 287


>gi|228909216|ref|ZP_04073042.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL
           200]
 gi|228850305|gb|EEM95133.1| Phenazine biosynthesis protein PhzF [Bacillus thuringiensis IBL
           200]
          Length = 299

 Score = 37.8 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +    ++ +   ET  GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTIYALREKGLLEEKSNLAIETKAGILPIQIDVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
             G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 EKGETFIKMRQAAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|212709136|ref|ZP_03317264.1| hypothetical protein PROVALCAL_00169 [Providencia alcalifaciens DSM
           30120]
 gi|212688048|gb|EEB47576.1| hypothetical protein PROVALCAL_00169 [Providencia alcalifaciens DSM
           30120]
          Length = 299

 Score = 37.8 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 36  NALSTDDNTHFDQIMLIHDFQDAS--VDAFIRIINCDGSEVQSCGNGMRC--VVRFLTSR 91
             +       F +   ++  + A    D  +     + SEV  CG+         F  ++
Sbjct: 44  QKIEIARQVGFSETAFVYTGESAGEETDYKVDFFTPE-SEVDFCGHATLAVFFTLFSLNQ 102

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
           +   +++ +T  GIL    + DG I   M       + +P+ R    ++     +G    
Sbjct: 103 LGAGTYSQKTKAGILNVTVSADGVI---M------EQALPITRQGPDVNAVAAALGIPTE 153

Query: 152 LFLRNPF---VVSMGNPHAIFFVE 172
              +      ++S G P  +  V+
Sbjct: 154 TITKTGLPIEIISTGLPDILVPVQ 177


>gi|16799856|ref|NP_470124.1| hypothetical protein lin0782 [Listeria innocua Clip11262]
 gi|16413233|emb|CAC96014.1| lin0782 [Listeria innocua Clip11262]
          Length = 282

 Score = 37.8 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 16/137 (11%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKEN 111
                D  +        EV  CG+    +  F      +++ +  +T ET  G+L     
Sbjct: 52  DSKIADYKLEYFTP-KEEVDLCGHAT--IGSFAILMHLNKLHKNQYTIETNSGVLTITL- 107

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG+I ++   P   + +IP     +  D ++ +             +VS G    +  +
Sbjct: 108 KDGTIFMEQNRPNF-YDIIPPNELTECFDLNKVN-------THYQVQIVSTGLKDILIPI 159

Query: 172 EDDLYHYDLASFGNLLA 188
           + ++  + L      + 
Sbjct: 160 KSEIDLHALEPNFEKIR 176


>gi|99078177|ref|YP_611435.1| proline racemase [Ruegeria sp. TM1040]
 gi|99035315|gb|ABF62173.1| proline racemase [Ruegeria sp. TM1040]
          Length = 308

 Score = 37.8 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 11/120 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
           L+ +  D      +   + D + +  CG+G   +   L    R+   +   ET  GI+  
Sbjct: 60  LLVEPVDPECVTGVIYFDAD-AVLGMCGHGTIGLAVTLAHLGRIDVGTHKIETPAGIVTV 118

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH----IGPVNHLFLRNPFVVSMGN 164
           + +   ++SV      ++ + I  A S +      F      G         P  VS GN
Sbjct: 119 ELHDANTVSVT----NIESRRIHHAVSVEVKGHGSFTGDLAYGGNWFFICDAPIEVSTGN 174


>gi|323456537|gb|EGB12404.1| hypothetical protein AURANDRAFT_19587 [Aureococcus anophagefferens]
          Length = 356

 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLT-SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R     G+EV  CG+G       L           F++  G+L A++   G I +D 
Sbjct: 142 YGLRWFTPSGAEVDLCGHGTLAAAHALFEDDAALDEVAFDSRSGVLNARKLDGGYIELDF 201

Query: 121 GEPILDWKLIP 131
             P      +P
Sbjct: 202 --PKDAPADVP 210


>gi|34498281|ref|NP_902496.1| proline racemace [Chromobacterium violaceum ATCC 12472]
 gi|34332852|gb|AAQ60494.2| probable proline racemace [Chromobacterium violaceum ATCC 12472]
          Length = 308

 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 15/95 (15%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGM-------RC 83
           D        +    D ++  L  +         +   N  G     CG+G         C
Sbjct: 43  DQWRRACLLEPRGSDVLVGALYCEPVSPDAACGVIFFNNTGYIG-MCGHGTIGLIASLHC 101

Query: 84  VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           + R     +   +   +T  G + A  + DGS+++
Sbjct: 102 LGR-----IAPGAHKIDTPVGPVDAVLHEDGSVTL 131


>gi|330819676|ref|YP_004348538.1| Putative proline racemase [Burkholderia gladioli BSR3]
 gi|327371671|gb|AEA63026.1| Putative proline racemase [Burkholderia gladioli BSR3]
          Length = 321

 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D   A    +    D ++  L+ +  D    A +   N  G     CG+G   +V  L  
Sbjct: 43  DDWRAAVVTEPRGSDVVVGALLCEPLDPGCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISV 118
             R+   +   ET  GI+ A  N D S+SV
Sbjct: 102 LGRIGPGTHRIETPVGIVEATLNADRSVSV 131


>gi|256377977|ref|YP_003101637.1| hypothetical protein Amir_3920 [Actinosynnema mirum DSM 43827]
 gi|255922280|gb|ACU37791.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
          Length = 270

 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 214 TWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMT 268
            WERG      CGS A A         +T+    V+  GG + +    +       V + 
Sbjct: 204 VWERG------CGSGAAALAAYLAWKGRTSVTTRVRQPGGVMTVAADHDARGGLTGVRVQ 257

Query: 269 GEAKKEWEGK 278
           G  +   EG+
Sbjct: 258 GTVRVVAEGR 267


>gi|123437271|ref|XP_001309433.1| phenazine biosynthesis protein PhzF family protein [Trichomonas
           vaginalis G3]
 gi|121891160|gb|EAX96503.1| phenazine biosynthesis protein PhzF family protein [Trichomonas
           vaginalis G3]
          Length = 236

 Score = 37.8 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 47  DQI---MLIHDFQDASV-------DAFIRIINCDGSEVQSCGNGMR----CVVRFLTSRM 92
           DQI   + I +    +           +R     G E+  CG+        + RF   + 
Sbjct: 7   DQIMQSIAIENNLSETAFTVREGDHYRLRWFTP-GGEIDLCGHATLATSYVIFRF-YEKT 64

Query: 93  KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152
                TF T  GIL  K+  +    + M  P    + + + +  +     +    P+   
Sbjct: 65  -ISEVTFHTKGGILTVKKQGNL---LQMNFPAYKLQKVEVTKEMEDAIGHK----PLEAY 116

Query: 153 FLRNPFVV 160
             R+   V
Sbjct: 117 ISRDLVCV 124


>gi|312190962|gb|ADQ43387.1| putative trans-2,3-dihydro-3-hydroxyanthranilate isomerase
           [Streptomyces cinnamonensis]
          Length = 278

 Score = 37.8 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 25/144 (17%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD-----------FQDAS 59
           M    N  +V+D     + +T + +      D+   DQ+  I                  
Sbjct: 1   MH---N-YVVVDAFAR-EPLTGNPVAVFFDADDLTADQMQRIAREMNLSETTFVLAPKQG 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SIS 117
            D  +RI     +E+   G+ +      L  R        ET  G++  +  R G   +S
Sbjct: 56  GDVHVRIFTP-VNELPFAGHPLLGTAIALGRRTDADQLRIETAMGVIPFELQRVGGQVVS 114

Query: 118 VDMGEPILDWKLIPLARSFDKMDR 141
             M +P      +P+   FD+ + 
Sbjct: 115 TSMRQP------VPVWEPFDRAEE 132


>gi|72160500|ref|YP_288157.1| phenazine biosynthesis PhzC/PhzF protein [Thermobifida fusca YX]
 gi|71914232|gb|AAZ54134.1| Phenazine biosynthesis PhzC/PhzF protein [Thermobifida fusca YX]
          Length = 267

 Score = 37.8 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 73/233 (31%), Gaps = 19/233 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +     A  D  +R      +EV  CG+        L +      F F +  G+L    
Sbjct: 48  FVRPLAGADADYELRWFTPT-TEVDLCGHATLAAAHVLAAGGAEGPFRFASRSGVLTVT- 105

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            RDG + +D        K +P       +  +    G  +     N + V   +   +  
Sbjct: 106 ARDGLLWLDFPANPPYAKDVPDGL-VAALGGEPVWAGFSD----VNDYFVVYPDEATVRA 160

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +  DL      +   +    P    G            ++       G+      GSA  
Sbjct: 161 LAPDLAEVARCTVRGVTVTAPADP-GQPYDFVSRLFAPAI-------GIPEDPVTGSAHT 212

Query: 231 ASV-VASGCLHKTN-RAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279
           A     +  L +T   AV     GG L++E   +  + V + G A    EG L
Sbjct: 213 ALGPYWAQRLGRTRLDAVQCSARGGRLVVELPADAPDRVLIGGTAVTVSEGTL 265


>gi|326792517|ref|YP_004310338.1| phenazine biosynthesis protein PhzF family [Clostridium lentocellum
           DSM 5427]
 gi|326543281|gb|ADZ85140.1| phenazine biosynthesis protein PhzF family [Clostridium lentocellum
           DSM 5427]
          Length = 292

 Score = 37.8 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAK 109
            +    D  +R     G E   CG+     ++F+   +   S   F  ET  G+L   
Sbjct: 49  CKSDVADYKLRYFTP-GHETPLCGHATIGTMKFIVDGLNANSDLDFKIETRAGLLDIH 105


>gi|167035128|ref|YP_001670359.1| proline racemase [Pseudomonas putida GB-1]
 gi|166861616|gb|ABZ00024.1| proline racemase [Pseudomonas putida GB-1]
          Length = 308

 Score = 37.8 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 43/234 (18%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L      A     +   N  G  +  CG+G   +V  L  
Sbjct: 43  DQWRKACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
              +       +T  G + A  + DG+I+V         + + +A     + R     G 
Sbjct: 102 LGLIAPGEHKIDTPVGQVSATLHEDGAITVGNVPSYRYRQQVAVAVPGHGVVRGDIAWGG 161

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF---------------GNLLAKHPMF 193
                    F+VS    H      D+       ++               G  +    +F
Sbjct: 162 ------NWFFLVS---EHGQRIELDNREALTEYTWAMLKALEAQGITGENGAPIDHVELF 212

Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           ++  N    +              ++R       CG+   A +       K   
Sbjct: 213 ADDANADSRNFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255


>gi|324327321|gb|ADY22581.1| putative phenazine biosynthesis-like protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 299

 Score = 37.8 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +     + + T E   GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|301054916|ref|YP_003793127.1| putative phenazine biosynthesis-like protein [Bacillus anthracis
           CI]
 gi|300377085|gb|ADK05989.1| putative Phenazine biosynthesis-like protein, PhzC-PhzF Family
           [Bacillus cereus biovar anthracis str. CI]
          Length = 299

 Score = 37.8 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +     + + T E   GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|325915141|ref|ZP_08177467.1| proline racemase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538663|gb|EGD10333.1| proline racemase [Xanthomonas vesicatoria ATCC 35937]
          Length = 312

 Score = 37.4 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           D   +    +    D ++  L+   +D +    +   N  G     CG+G   VVR L  
Sbjct: 43  DHWRSAIACEPRGSDTMVGALLLPARDPTACTGVIFFNNVGYLG-MCGHGTIGVVRTLAE 101

Query: 91  --RMKRKSFTFETIRGILVAKENRDGSISVD 119
             R+       ET  G +      DG++SVD
Sbjct: 102 LGRIGPGQHRIETPVGTVGVALADDGTVSVD 132


>gi|229157001|ref|ZP_04285082.1| Phenazine biosynthesis protein PhzF [Bacillus cereus ATCC 4342]
 gi|228626491|gb|EEK83237.1| Phenazine biosynthesis protein PhzF [Bacillus cereus ATCC 4342]
          Length = 299

 Score = 37.4 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +     + + T E   GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|311893905|dbj|BAJ26313.1| hypothetical protein KSE_04660 [Kitasatospora setae KM-6054]
          Length = 273

 Score = 37.4 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRD 113
                 D  +R      +EV  CG+        L +         F    GIL A+   D
Sbjct: 54  PPGGDADWALRWFTP-VTEVDMCGHATLATAHVLHTTGTATGPVRFTARCGILTAETGPD 112

Query: 114 GSISVDMGEPILDWKLIP 131
           G++++D     L    +P
Sbjct: 113 GAVTMDFPTSDLTPVAVP 130


>gi|218904551|ref|YP_002452385.1| phenazine biosynthesis protein PhzF family [Bacillus cereus AH820]
 gi|218536519|gb|ACK88917.1| phenazine biosynthesis protein PhzF family [Bacillus cereus AH820]
          Length = 299

 Score = 37.4 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAK--EN 111
               D  +R     G E+  CG+G    +  L  +     + + T E   GIL  +   N
Sbjct: 54  SEVGDIRMRYFTP-GFEMDLCGHGTVGTLYALREKGLLEGKSNLTIEAKAGILPIQIGVN 112

Query: 112 RDGSISVDMGEPI-----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            +G   + M +              LA S      D     P+ +    N  V+
Sbjct: 113 ENGETFIKMRQAAPQFKEFTGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVI 166


>gi|55379132|ref|YP_136982.1| proline racemase [Haloarcula marismortui ATCC 43049]
 gi|55231857|gb|AAV47276.1| proline racemase [Haloarcula marismortui ATCC 43049]
          Length = 323

 Score = 37.4 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 36/270 (13%)

Query: 23  MRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
            R      T+D +  L   +   H D    +        D  +  ++ DG  +  CG+G+
Sbjct: 37  ERRDRFEATADGVRKLLMQEPRGHADMFGAV-PVPTDRADLGVFFMDTDG-YLDMCGHGL 94

Query: 82  RCVVRFLTSRMK---RKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLIPLARSFD 137
             VV  L  R +       T ET  G++       DG +         +     +  +  
Sbjct: 95  IGVVTALIERGELPEAPELTVETPAGLVDVTVKIADGVVR----RVAFENVDSYVCETV- 149

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA-----SFGNLLAKHPM 192
            +++D   +            VV   +   +   ED     D A     +  +   K P+
Sbjct: 150 TVEQDGVPVEARIVYSGNYFAVVDADSLGVVLNSEDATQCIDPALELRRAVNDAAPKDPV 209

Query: 193 FSEGVNLSIARVTSLESLD--LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
                 +S   +T+ +  D     +  G    + CG+  CA          T   V    
Sbjct: 210 TGTRATVSAVELTASDDSDRSCVVFADGSVDRSPCGTGTCA--------RLTLHHVD--- 258

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             G L +       V +TG     +EG + 
Sbjct: 259 --GDLAV----GERVEVTGPVGSTFEGYIT 282


>gi|168819357|ref|ZP_02831357.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205343687|gb|EDZ30451.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085932|emb|CBY95706.1| Uncharacterized isomerase yddE ORFB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 297

 Score = 37.4 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHEKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|324326804|gb|ADY22064.1| proline racemase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 313

 Score = 37.4 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       +DA +   N +GS     G  +
Sbjct: 37  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEIDAAVLFFNHEGSMPLHYGGIV 95

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 96  AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138


>gi|229005654|ref|ZP_04163358.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock1-4]
 gi|228755588|gb|EEM04929.1| Phenazine biosynthesis protein PhzF [Bacillus mycoides Rock1-4]
          Length = 249

 Score = 37.4 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR 112
                D  IR     G E+  CG+     +  L  R     +++ T ET   +L    + 
Sbjct: 3   PSNVADIRIRYFTP-GHEMNLCGHATVGTIFALHERGLLKGKRNLTIETKASVLPVHIDI 61

Query: 113 DGS----ISVDMGEPI---LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           D +    I +    P     D  +  LA S      D     P+ +       ++
Sbjct: 62  DENGESFIKMRQTAPQFQKFDGSIEELAHSIGLHGNDLDETLPIVYGSTGIWTLL 116


>gi|255635872|gb|ACU18283.1| unknown [Glycine max]
          Length = 197

 Score = 37.4 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274
           GV     CG A CA     S  L K +         GG L +   + N  V + G+A K 
Sbjct: 131 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 190

Query: 275 WEG 277
            EG
Sbjct: 191 MEG 193


>gi|255644698|gb|ACU22851.1| unknown [Glycine max]
          Length = 301

 Score = 37.4 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274
           GV     CG A CA     S  L K +         GG L +   + N  V + G+A K 
Sbjct: 235 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 294

Query: 275 WEG 277
            EG
Sbjct: 295 MEG 297


>gi|295699990|ref|YP_003607883.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1002]
 gi|295439203|gb|ADG18372.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1002]
          Length = 318

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTF 99
              D ++  L+ +  D S  A +   N  G     CG+G   +V  L    R+ +     
Sbjct: 57  RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHRGRIGQGRHLI 115

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  G++ A  N DG ++V
Sbjct: 116 ETPVGVVEATLNEDGGVAV 134


>gi|227356507|ref|ZP_03840894.1| possible phenazine biosynthesis protein [Proteus mirabilis ATCC
           29906]
 gi|227163263|gb|EEI48190.1| possible phenazine biosynthesis protein [Proteus mirabilis ATCC
           29906]
          Length = 295

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++       +T++   A++      F +   ++   D   D  +     +G EV  CG
Sbjct: 33  VVLN----PPKLTTEQKIAIAQQ--VGFSETAFVYSGDD--TDFKVDFFTAEG-EVDFCG 83

Query: 79  NGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116
           +    V   L     +K   ++ +T  GIL    N D  +
Sbjct: 84  HATLAVFFTLSSLKLLKPGDYSQKTKAGILTVTINHDNIV 123


>gi|301054355|ref|YP_003792566.1| proline racemase [Bacillus anthracis CI]
 gi|300376524|gb|ADK05428.1| conserved hypothetical proline racemase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 313

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       VDA +   N +GS     G  +
Sbjct: 37  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 96  AVITMLLESGYLKKRETNQYKIETLSGIFSVHAYVENDEVVSV 138


>gi|229139471|ref|ZP_04268042.1| Proline racemase [Bacillus cereus BDRD-ST26]
 gi|228644018|gb|EEL00279.1| Proline racemase [Bacillus cereus BDRD-ST26]
          Length = 308

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       VDA +   N +GS     G  +
Sbjct: 32  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 90

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 91  AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 133


>gi|206974086|ref|ZP_03235004.1| hypothetical protein BCH308197_2794 [Bacillus cereus H3081.97]
 gi|217960274|ref|YP_002338834.1| hypothetical protein BCAH187_A2884 [Bacillus cereus AH187]
 gi|222096332|ref|YP_002530389.1| proline racemase [Bacillus cereus Q1]
 gi|206748242|gb|EDZ59631.1| hypothetical protein BCH308197_2794 [Bacillus cereus H3081.97]
 gi|217063867|gb|ACJ78117.1| hypothetical protein BCAH187_A2884 [Bacillus cereus AH187]
 gi|221240390|gb|ACM13100.1| proline racemase [Bacillus cereus Q1]
          Length = 313

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       VDA +   N +GS     G  +
Sbjct: 37  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 96  AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138


>gi|49479615|ref|YP_036918.1| proline racemase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331171|gb|AAT61817.1| conserved hypothetical protein, possible proline racemase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 313

 Score = 37.4 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       VDA +   N +GS     G  +
Sbjct: 37  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEVDAAVLFFNHEGSIPLHYGGIV 95

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 96  AVITMLLESGYLKKRETNQYKIETLSGIFSVHAYVENDEVVSV 138


>gi|119510254|ref|ZP_01629391.1| Phenazine biosynthesis PhzC/PhzF protein [Nodularia spumigena
           CCY9414]
 gi|119465103|gb|EAW46003.1| Phenazine biosynthesis PhzC/PhzF protein [Nodularia spumigena
           CCY9414]
          Length = 265

 Score = 37.4 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + A    +A+    + ++           GG + + +   + V ++G+A     G+L
Sbjct: 207 TGAAHCCLAAFWRDRLHKDEFLAFQASQRGGVVKVRYPGGDRVLLSGQAITVMRGEL 263


>gi|271963465|ref|YP_003337661.1| PhzF family phenazine biosynthesis protein [Streptosporangium
           roseum DSM 43021]
 gi|270506640|gb|ACZ84918.1| PhzF family phenazine biosynthesis protein [Streptosporangium
           roseum DSM 43021]
          Length = 301

 Score = 37.4 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 14/198 (7%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D  G            L+      + +   +    D S    +R      +EV  CG
Sbjct: 46  VVLDASGLS------GAEMLAVAAEVGYSETAFVTSRDDESRTFRVRYFAP-SAEVAFCG 98

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138
           +        L  R+      F+T  G +      DG    +M    L       A   + 
Sbjct: 99  HATIATSVALAERIGIGRLAFDTNAGEIAVDTFIDG----EMLRATLTSVPTRSAPVAEP 154

Query: 139 MDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
           +  +   +   +   L     P V   GN H +          DL      L        
Sbjct: 155 VLDETLAVLGWSRDDLDRAFPPHVAFGGNDHLMLAAGSRERLADLDYDFEGLRSIMTREG 214

Query: 196 GVNLSIARVTSLESLDLR 213
              +++    S      R
Sbjct: 215 WTTVNLFWRESDGRFHSR 232


>gi|166240856|ref|ZP_02240728.1| phenazine biosynthesis protein, PhzF family [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 138

 Score = 37.4 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 18  ILVIDMRGCHDNITSDAINALSTD-----DNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
             VI  +G    +   A    + D         F++   +     AS     R     G 
Sbjct: 12  FSVISNKGNPAGVVLHADGLCAEDMQQIARQVGFNETSFVLKSDVAS--FRFRYFTP-GH 68

Query: 73  EVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128
           E+  CG+     V  L  +    + +  + ET  GIL  + +       + M +   + K
Sbjct: 69  EMDLCGHATVATVFCLKRQGLLPEVEELSVETKAGILKIRVSDTEQGFIIHMQQA--EPK 126

Query: 129 LIPLARSFDKM 139
            IP   S D +
Sbjct: 127 FIPYEGSIDAL 137


>gi|42781919|ref|NP_979166.1| hypothetical protein BCE_2862 [Bacillus cereus ATCC 10987]
 gi|42737843|gb|AAS41774.1| hypothetical protein BCE_2862 [Bacillus cereus ATCC 10987]
          Length = 313

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       +DA +   N +GS     G  +
Sbjct: 37  NEQFSGELAEEMQLLLNEPRGFIGLNGCIVV-PSIHPEIDAAVLFFNHEGSIPLHYGGIV 95

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +  ET+ GI  + A    D  +SV
Sbjct: 96  AVITMLLESGYLKKRETNQYKIETLSGIFLVHAYVENDEVVSV 138


>gi|229030514|ref|ZP_04186550.1| Proline racemase [Bacillus cereus AH1271]
 gi|228730781|gb|EEL81725.1| Proline racemase [Bacillus cereus AH1271]
          Length = 308

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 23  MRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
                  +  +    L+        +  +++       VDA +   N +GS     G  +
Sbjct: 32  NEQFSGELAEEMKLLLNEPRGFIGLNGCIVV-PSIHTEVDAAVIFFNHEGSIPLHYGGIV 90

Query: 82  RCVVRFLTSRMKRKS----FTFETIRGI--LVAKENRDGSISV 118
             +   L S   +K     +T ET+ GI  + A    D  +SV
Sbjct: 91  AVITMLLESGYLKKRETNQYTIETLSGIFSVYAYVENDEVVSV 133


>gi|161613973|ref|YP_001587938.1| hypothetical protein SPAB_01711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363337|gb|ABX67105.1| hypothetical protein SPAB_01711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|56413473|ref|YP_150548.1| hypothetical protein SPA1287 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362397|ref|YP_002142034.1| hypothetical protein SSPA1196 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127730|gb|AAV77236.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093874|emb|CAR59359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|332188553|ref|ZP_08390272.1| phenazine biosynthesis PhzF family protein [Sphingomonas sp. S17]
 gi|332011397|gb|EGI53483.1| phenazine biosynthesis PhzF family protein [Sphingomonas sp. S17]
          Length = 267

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETI-RGILVA 108
            +        D  +R     G EV+ CG+         L+S   R+   F T   G+L  
Sbjct: 49  FLVPSDGEEADFELRWFTP-GDEVEMCGHATLASGHVVLSSDTTREQVRFATRHAGVLEV 107

Query: 109 KENRDG-SISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
             +  G S+S+    P  +    +  A   D +     H      + +     V    P 
Sbjct: 108 ARDGLGYSLSLPERTPSPEPLPEVVAALGVDGVVETLRHPAGYAVVVVDGAARVRACTPD 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
                +   Y   L S G       +    V +  A     + +                
Sbjct: 168 FTALAKAGRYVVILTSRGGEGEADVV--SRVFVP-AFAIDEDPV---------------- 208

Query: 227 SAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           + A  +V+      K  R           GG L     + + V + G      EG   + 
Sbjct: 209 TGAAHAVITPYWTKKLGREAFTAEQASTRGGRLTCG-LEGDRVVLGGGCVTVIEGTFLLP 267


>gi|169840488|ref|ZP_02873676.1| hypothetical protein cdivTM_25664 [candidate division TM7
          single-cell isolate TM7a]
          Length = 28

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 5  MVDFAKMEGIGNKI 18
          M+ F K +G GN  
Sbjct: 1  MLKFEKYQGAGNDF 14


>gi|224583927|ref|YP_002637725.1| hypothetical protein SPC_2157 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468454|gb|ACN46284.1| hypothetical protein SPC_2157 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 307

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 62  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 120 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 176

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 177 LLKPDVD 183


>gi|126176257|ref|YP_001052406.1| PhzF family phenazine biosynthesis protein [Shewanella baltica
           OS155]
 gi|125999462|gb|ABN63537.1| phenazine biosynthesis protein PhzF family [Shewanella baltica
           OS155]
          Length = 288

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++     DN++++A  A++      + +   +   QD  VD  +      G EV  CG
Sbjct: 23  VVLNA----DNLSNEAKLAIAQA--VGYSETAFV--SQDDEVDFELSFFTITG-EVDFCG 73

Query: 79  NGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
           +    +  F T      +    +   T  G+L      +G+I +++  P        L  
Sbjct: 74  HAT--LAAFSTMHQKGMVAEGQYVQRTKAGLLTVTIESNGNIVMELKLPEY------LGM 125

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFVE 172
              +   +   I P      + P  V S G P  I  V 
Sbjct: 126 FSYEAISELIGIDPAVLESTQLPIEVISTGLPDIIVPVP 164


>gi|283478945|emb|CAY74861.1| pyruvate oxidase [Erwinia pyrifoliae DSM 12163]
          Length = 663

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +      L +T +A  V  L G   IE+ +   V MTG
Sbjct: 294 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 342


>gi|198242825|ref|YP_002215566.1| hypothetical protein SeD_A1761 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937341|gb|ACH74674.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326623312|gb|EGE29657.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|62180149|ref|YP_216566.1| hypothetical protein SC1579 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127782|gb|AAX65485.1| putative phenazine biosynthesis protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714622|gb|EFZ06193.1| Phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|16760298|ref|NP_455915.1| hypothetical protein STY1484 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141935|ref|NP_805277.1| hypothetical protein t1491 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167549951|ref|ZP_02343709.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168241122|ref|ZP_02666054.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168462983|ref|ZP_02696914.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194444446|ref|YP_002040828.1| hypothetical protein SNSL254_A1696 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451804|ref|YP_002045621.1| hypothetical protein SeHA_C1759 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200391082|ref|ZP_03217693.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205352733|ref|YP_002226534.1| hypothetical protein SG1546 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856924|ref|YP_002243575.1| hypothetical protein SEN1474 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213163642|ref|ZP_03349352.1| hypothetical protein Salmoneentericaenterica_27965 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213426228|ref|ZP_03358978.1| hypothetical protein SentesTyphi_11689 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648507|ref|ZP_03378560.1| hypothetical protein SentesTy_15199 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826360|ref|ZP_06545472.1| hypothetical protein Salmonellentericaenterica_13470 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25348929|pir||AF0671 conserved hypothetical protein STY1484 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502593|emb|CAD01743.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137564|gb|AAO69126.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194403109|gb|ACF63331.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194410108|gb|ACF70327.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195634282|gb|EDX52634.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|199603527|gb|EDZ02073.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205272514|emb|CAR37409.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325135|gb|EDZ12974.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339600|gb|EDZ26364.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|206708727|emb|CAR33053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627801|gb|EGE34144.1| Phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|322433091|ref|YP_004210340.1| 4-hydroxyproline epimerase [Acidobacterium sp. MP5ACTX9]
 gi|321165318|gb|ADW71022.1| 4-hydroxyproline epimerase [Acidobacterium sp. MP5ACTX9]
          Length = 319

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 48  QIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGI 105
             +L+         A +   N D   +  CG+G   V++ L    R+K      ET  G 
Sbjct: 64  GALLVEPL-SEDASAAVLFFN-DVGYLGMCGHGTIGVIKTLAYLGRIKPGQHKIETSVGD 121

Query: 106 LVAKENRDGSISV 118
           + A  + DGS++V
Sbjct: 122 VSACLHEDGSVTV 134


>gi|56552841|ref|YP_163680.1| PhzF family phenazine biosynthesis protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56544415|gb|AAV90569.1| phenazine biosynthesis protein PhzF family [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 295

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 40/288 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     D I ++ +  ++ + N    + + I        D   RI     SE+   G
Sbjct: 23  VVFDA----DEIPAETMQKIAREMN--LSETVFILKPTTPDADYRARIFTP-MSEMPFAG 75

Query: 79  N-----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS-VDMGEPILDWKLIPL 132
           +         + R+   +        E   GI+  +     + + + M +    ++   L
Sbjct: 76  HPTVAAAHSVLARY-PDKANATLLRQECGIGIVPVEVIPSEAGTLLRMTQGAPKYRDSGL 134

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLASFGNLLAKH 190
           +R               +  F     VVS G P  I  +   + +   +           
Sbjct: 135 SRETVAKMLGCAESDLADSPFE----VVSTGVPWLIVELSRFEAISTLNPDQGLTARECK 190

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS--AACASVVASGCLHKT 242
            + + GV +          + +R   R      GV     CGS   + A+ +A       
Sbjct: 191 ALKACGVTV-FVERGDGGPVRIRV--RTFAPGEGVAEDPVCGSGNGSVAAYIAHHKHAGD 247

Query: 243 NRAVSVKMLG------GGLLIEWHDNNH---VFMTGEAKKEWEGKLDI 281
                +   G      G +   W  +     V + G+A     G+L +
Sbjct: 248 PAGSYIAEQGIEIGRDGEIHASWERDGENLRVRIGGQAAVSASGQLHL 295


>gi|259908940|ref|YP_002649296.1| pyruvate dehydrogenase [Erwinia pyrifoliae Ep1/96]
 gi|224964562|emb|CAX56075.1| Pyruvate dehydrogenase (Cytochrome) [Erwinia pyrifoliae Ep1/96]
          Length = 573

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +      L +T +A  V  L G   IE+ +   V MTG
Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 252


>gi|310767157|gb|ADP12107.1| pyruvate dehydrogenase [Erwinia sp. Ejp617]
          Length = 573

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +      L +T +A  V  L G   IE+ +   V MTG
Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEHIEYDNPYDVGMTG 252


>gi|170085727|ref|XP_001874087.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651639|gb|EDR15879.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 295

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 51  LIHDFQ-----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETI 102
            I   Q     D +    IR    +G EV  CG+      + L S+  R S +   F T 
Sbjct: 52  FIGPSQLSAENDTTAVYDIRYFAANGVEVSLCGHATLASAKVLFSQTGRASISVLQFHTP 111

Query: 103 R-GILVAKENRDGSISVD 119
             G++ AK+   G + ++
Sbjct: 112 SEGVVAAKKVDGGLVEIE 129


>gi|313632681|gb|EFR99655.1| PhzF family phenazine biosynthesis protein [Listeria seeligeri FSL
           N1-067]
          Length = 287

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D  ++D +  ++      F++ + I   + A+    +R     G E   CG+     +  
Sbjct: 23  DTYSTDEMQKIAKK--VGFNETVFICKSELAA--MKLRYFTP-GFETPLCGHATMGAIFA 77

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKM 139
           L +    +    ET  G+L           + M +     K I      + +
Sbjct: 78  LLNGNDDQQLEIETGAGVLQINYEAKNQ-KITMHQAA--PKFIDFNGDKEAL 126


>gi|323528430|ref|YP_004230582.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1001]
 gi|323385432|gb|ADX57522.1| 4-hydroxyproline epimerase [Burkholderia sp. CCGE1001]
          Length = 326

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 44  THFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTF 99
              D ++  L+ +  D S  A +   N  G     CG+G   +V  L    R+       
Sbjct: 57  RGSDVVVGALLCEPDDPSCAAGVIFFNNVGYLG-MCGHGTIGLVVSLAHMGRIAPGRHRI 115

Query: 100 ETIRGILVAKENRDGSISV 118
           ET  G++ A  N D S++V
Sbjct: 116 ETPVGVVEATLNDDDSVAV 134


>gi|197250568|ref|YP_002146455.1| hypothetical protein SeAg_B1580 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214271|gb|ACH51668.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|168235692|ref|ZP_02660750.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194738215|ref|YP_002114605.1| hypothetical protein SeSA_A1698 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713717|gb|ACF92938.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197291092|gb|EDY30445.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|168229989|ref|ZP_02655047.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470340|ref|ZP_03076324.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194456704|gb|EDX45543.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335430|gb|EDZ22194.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|15789604|ref|NP_279428.1| hypothetical protein VNG0332C [Halobacterium sp. NRC-1]
 gi|169235316|ref|YP_001688516.1| hypothetical protein OE1502R [Halobacterium salinarum R1]
 gi|10579960|gb|AAG18908.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726382|emb|CAP13163.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 301

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 30  ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
           +T D + A++ +      +   +     A  D  +R      +EV  CG+        L 
Sbjct: 31  LTDDQMQAIAAE--LGASETAFLRPSDAA--DRRLRYFTPT-TEVDLCGHATIASHAHLY 85

Query: 90  SRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
                     T ET  G+L  +   DG++ +    P +
Sbjct: 86  DDGALAAGEHTLETNVGVLDIEVAEDGTVWMAQNPPTV 123


>gi|300711982|ref|YP_003737796.1| phenazine biosynthesis protein PhzF family [Halalkalicoccus
           jeotgali B3]
 gi|299125665|gb|ADJ16004.1| phenazine biosynthesis protein PhzF family [Halalkalicoccus
           jeotgali B3]
          Length = 300

 Score = 37.0 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENR 112
                 D  IR      +EV  CG+        L         + T ET  G+L  +   
Sbjct: 51  SDSERADRRIRYFTPT-TEVDLCGHATIASHAHLFEAGTLDAGTHTLETNVGVLDIEVRS 109

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFV 171
           DG++ ++  +P ++          + +  DR     +  +    P  V S G P  +  V
Sbjct: 110 DGTVWMEQDDPRIERVDPDYETVAESLSIDR---AALEDVGADLPLAVSSTGFPVLVVPV 166

Query: 172 E 172
            
Sbjct: 167 N 167


>gi|256829396|ref|YP_003158124.1| hypothetical protein Dbac_1615 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578572|gb|ACU89708.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 271

 Score = 37.0 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNNH-VFMTGEAKKEWEGK 278
            T  CGS + A  +  G        + V    G  + +    +   V++ G       G+
Sbjct: 210 ET-GCGSGSLALALWLGRGKNLPTDLRVLQPSGSEIGVRADGDGPGVWIFGPVTLVARGE 268


>gi|197285998|ref|YP_002151870.1| hypothetical protein PMI2151 [Proteus mirabilis HI4320]
 gi|194683485|emb|CAR44285.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 287

 Score = 37.0 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++       +T++   A++      F +   ++   D   D  +     +G EV  CG
Sbjct: 25  VVLN----PPKLTTEQKIAIAQQ--VGFSETAFVYSGDD--TDFKVDFFTAEG-EVDFCG 75

Query: 79  NGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSI 116
           +    V   L     +K   ++ +T  GIL    N D  +
Sbjct: 76  HATLAVFFTLSSLKLLKPGDYSQKTKAGILTVTINHDNIV 115


>gi|204927486|ref|ZP_03218687.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204322828|gb|EDZ08024.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGPHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|227824727|ref|ZP_03989559.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905226|gb|EEH91144.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 269

 Score = 37.0 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 74  VQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL--- 129
            + CGN  R    +  + +  +   FE T  G     E R     +    P  D ++   
Sbjct: 61  GEFCGNASRSAAAY-WAHIHGEEGVFEVTCSGAKAPMEARVK--KLGSTPPTYDAEIDLP 117

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +PL+ + + M         V    +    VV  G  H ++F E+      +  +
Sbjct: 118 LPLSITEEAMR--------VGEKEVSLIHVVLPGIDHYVYFTEELDALSPMDYW 163


>gi|16764925|ref|NP_460540.1| hypothetical protein STM1581 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992938|ref|ZP_02574033.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168260235|ref|ZP_02682208.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197265748|ref|ZP_03165822.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|20141911|sp|P40788|YDDE_SALTY RecName: Full=Uncharacterized isomerase yddE
 gi|16420104|gb|AAL20499.1| putative phenazine biosynthesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197244003|gb|EDY26623.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205328971|gb|EDZ15735.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205350622|gb|EDZ37253.1| phenazine biosynthesis PhzC/PhzF protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261246774|emb|CBG24588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993495|gb|ACY88380.1| hypothetical protein STM14_1909 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158109|emb|CBW17606.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912569|dbj|BAJ36543.1| hypothetical protein STMDT12_C16000 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224206|gb|EFX49269.1| Phenazine biosynthesis protein PhzF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129851|gb|ADX17281.1| Uncharacterized isomerase yddE [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988468|gb|AEF07451.1| hypothetical protein STMUK_1550 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|238911816|ref|ZP_04655653.1| hypothetical protein SentesTe_11891 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 297

 Score = 37.0 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|149689924|ref|XP_001503650.1| PREDICTED: similar to Phenazine biosynthesis-like domain-containing
           protein (MAWD-binding protein) (Unknown protein 32 from
           2D-page of liver tissue) [Equus caballus]
          Length = 288

 Score = 37.0 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 227 SAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + +  +V++S    +  +           GG L I  H +  V + G      EG L 
Sbjct: 230 TGSAHTVLSSYWSQQLGKKNMHACQCSCRGGELEISLHPDGRVDIRGSVAIVLEGTLT 287


>gi|188534291|ref|YP_001908088.1| pyruvate dehydrogenase [Erwinia tasmaniensis Et1/99]
 gi|188029333|emb|CAO97210.1| Pyruvate dehydrogenase (cytochrome) [Erwinia tasmaniensis Et1/99]
          Length = 573

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +      L +T +A  V  L G   IE+ +   V MTG
Sbjct: 204 ITLLCGSGCAGAHAEVVKLAETLKAPIVHALRGKEYIEYDNPYDVGMTG 252


>gi|312960557|ref|ZP_07775063.1| pyruvate dehydrogenase (cytochrome) [Pseudomonas fluorescens WH6]
 gi|311285083|gb|EFQ63658.1| pyruvate dehydrogenase (cytochrome) [Pseudomonas fluorescens WH6]
          Length = 574

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 221 LTAACGSAACAS-VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +              V V  L G   +EW +   V MTG
Sbjct: 204 VTLLCGSGCAGAHAQVVALADTLGAPV-VHALRGKEHVEWDNPFDVGMTG 252


>gi|262273970|ref|ZP_06051782.1| phenazine biosynthesis PhzF family protein [Grimontia hollisae CIP
           101886]
 gi|262221780|gb|EEY73093.1| phenazine biosynthesis PhzF family protein [Grimontia hollisae CIP
           101886]
          Length = 294

 Score = 36.7 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 20/160 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V++     +N+++  + +++ D    + +   +   Q A  D  +R       EV  CG
Sbjct: 25  VVLNG----ENLSAKQMQSIAAD--LGYSETAFVLPSQKA--DYHVRFFTPT-EEVNLCG 75

Query: 79  NGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           +        L    +++   +T ET  G+L      +G I++    P           SF
Sbjct: 76  HATVGTFSTLYKVGKIEAGDYTQETGAGVLGVSITPEGRINMQQALPTF-------GNSF 128

Query: 137 DKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDD 174
           +  D           +         VS G    I  V ++
Sbjct: 129 NAEDIAPLLGLTAEDILATGLPVKSVSTGLWDVIVPVNNE 168


>gi|291299179|ref|YP_003510457.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568399|gb|ADD41364.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 278

 Score = 36.7 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D  G      +D    L+T     + +   +    D  +D  ++  +   +EV  CG
Sbjct: 21  VVLDATG------ADDAAMLATAAEIGYSETAFVFPRPDGELD--VKYFSP-LAEVPFCG 71

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
           +           R      T  T  G++    +RD
Sbjct: 72  HATIATAVAYAERHGVGELTLHTRAGVITVSTDRD 106


>gi|229174099|ref|ZP_04301635.1| Phenazine biosynthesis protein PhzF [Bacillus cereus MM3]
 gi|228609431|gb|EEK66717.1| Phenazine biosynthesis protein PhzF [Bacillus cereus MM3]
          Length = 299

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T   +  ++      F++   +   + A +   +R     G E+  CG+G    +  
Sbjct: 29  DGLTEGEMQRIAEK--VGFNETSFVLSSEVAHI--RMRFFTP-GFEMDLCGHGTVGTIFA 83

Query: 88  LTSRM---KRKSFTFETIRGILV----AKENRDGSISVDMGEPILD---WKLIPLARSFD 137
           L  R    ++ + T ET  GIL      KEN +  I +    P           LA S  
Sbjct: 84  LRERGLLEEKSNLTIETKAGILPIQIGVKENGEAFIKMRQAAPQFKEFTGSTEELAHSIG 143

Query: 138 KMDRDRFHIGPVNHLFLRNPFVV 160
             + D     P+ +    N  V+
Sbjct: 144 LEENDLDVSLPIVYGSTGNWTVI 166


>gi|213419795|ref|ZP_03352861.1| hypothetical protein Salmonentericaenterica_19233 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 247

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 2   KSEESDVRIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 59

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 60  EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 116

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 117 LLKPDVD 123


>gi|134100645|ref|YP_001106306.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006720|ref|ZP_06564693.1| hypothetical protein SeryN2_19538 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913268|emb|CAM03381.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 271

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA 271
           ERG  +    G+ A A V  +G     +    V+M  G L +    +    + G A
Sbjct: 93  ERGAAMRLLVGTGAGADV--AGLRGLADSGAQVRMSSGELPVMTIVDGRTCLLGSA 146


>gi|302530559|ref|ZP_07282901.1| phenazine biosynthesis PhzC/PhzF protein [Streptomyces sp. AA4]
 gi|302439454|gb|EFL11270.1| phenazine biosynthesis PhzC/PhzF protein [Streptomyces sp. AA4]
          Length = 266

 Score = 36.7 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 48/220 (21%)

Query: 73  EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
           EV  CG+    V   L          ++T+ G L   +  DG I  +M  P       P 
Sbjct: 84  EVALCGHATIAVTHVLGGHQ-----VYDTLSGRLTCTK-ADGWI--EMDFPAD-----PP 130

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP- 191
             + + +                N F V      A+   E DL        G L+     
Sbjct: 131 VETGEDLSHLLKAPAKFTGRARENLFAVLDSVE-AVRDAEPDLDALRATWTGRLILTAAG 189

Query: 192 ------MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F  GV +        + +                + +    +A     +  + 
Sbjct: 190 DDFVSRFFGPGVGV------DEDPV----------------TGSAHCSLAPYWAGQLGKT 227

Query: 246 VSV----KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             V       GG +  E  D+  V + G+A     G+L +
Sbjct: 228 ALVGHQLSARGGTVRTEVRDD-RVLLRGQAVTVVSGELYV 266


>gi|322832158|ref|YP_004212185.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Rahnella sp. Y9602]
 gi|321167359|gb|ADW73058.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Rahnella sp. Y9602]
          Length = 573

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +      L +T +A  V  L G   IEW +   V MTG
Sbjct: 204 ITMMCGSGCAGAHDEVIRLAETLKAPVVHALRGKEHIEWDNPYSVGMTG 252


>gi|7271069|emb|CAB77656.1| hypothetical protein [Candida albicans]
          Length = 302

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 101/317 (31%), Gaps = 67/317 (21%)

Query: 8   FA--KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F   K   +GN + VI      DN+T+  +  ++   N    +   I   + +     IR
Sbjct: 10  FTNVKY--LGNPVAVIYD---SDNLTTQEMQKIARWTN--LSETTFILTPKSSIAXYSIR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PI 124
           I    G+E+   G+        L    K K        G ++ +E   G + + + + P 
Sbjct: 63  IFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQII-QECGAGLVKISVEKTPN 117

Query: 125 LDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +   +P   SF           DK+  +  H     ++  + P ++  G   A+F +  
Sbjct: 118 NNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGK-PVLIDAGPKWAVFQLGS 176

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLR-----TWERGVGLTAACG 226
                DL      + +  + +    + +      + +S++LR         GV    ACG
Sbjct: 177 GKEVLDLNXDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV---GVAEDPACG 233

Query: 227 SAACAS-VVASGCLHKTNRAVSVK---------------------MLGGGLLIEWHDNNH 264
           S + A     +  +       ++                         G L I       
Sbjct: 234 SGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTKNGDLSIHVG---- 289

Query: 265 VFMTGEAKKEWEGKLDI 281
               G A   +EG   I
Sbjct: 290 ----GHAITCFEGTYSI 302


>gi|309364768|emb|CAP24253.2| hypothetical protein CBG_03344 [Caenorhabditis briggsae AF16]
          Length = 362

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +R      +EV  CG+        L + +        F+T  G+L+ K++  G+  V+
Sbjct: 95  FSLRWFTP-KTEVPLCGHATLATSHVLFNEIGNVNTEIKFDTQSGVLIVKKDESGN--VE 151

Query: 120 MGEPILDWKLIPLARSFDKM 139
           M  P  D   I    + + +
Sbjct: 152 MDFPEYDLTSIKFNDTPNPL 171


>gi|268537066|ref|XP_002633669.1| Hypothetical protein CBG03344 [Caenorhabditis briggsae]
          Length = 318

 Score = 36.7 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +R      +EV  CG+        L + +        F+T  G+L+ K++  G+  V+
Sbjct: 66  FSLRWFTP-KTEVPLCGHATLATSHVLFNEIGNVNTEIKFDTQSGVLIVKKDESGN--VE 122

Query: 120 MGEPILDWKLIPLARSFDKM 139
           M  P  D   I    + + +
Sbjct: 123 MDFPEYDLTSIKFNDTPNPL 142


>gi|46205714|ref|ZP_00209990.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 178

 Score = 36.7 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 47  DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM 92
           D ++ I  FQ A     + I+N DG+  +  GNG+    R L  + 
Sbjct: 67  DGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQG 110


>gi|238896376|ref|YP_002921114.1| translocation protein TolB precursor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330011187|ref|ZP_08307006.1| putative oligogalacturonate lyase [Klebsiella sp. MS 92-3]
 gi|238548696|dbj|BAH65047.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534241|gb|EGF60859.1| putative oligogalacturonate lyase [Klebsiella sp. MS 92-3]
          Length = 391

 Score = 36.7 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 21  IDMRGCHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGS------ 72
           +D+R     +  +    L       FD   +   H+     VDA + ++N DGS      
Sbjct: 173 VDLRSGESQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVK 232

Query: 73  ---EVQSC--------GNGMRCVVRFLTSRMKRKSFTFETIRGI 105
                +SC        G+ +   V +L  +  R  + F+   G+
Sbjct: 233 AHAPGESCTHEFWVPDGSAL-IYVSYLKGQQGRTIYRFDPESGV 275


>gi|300715122|ref|YP_003739925.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060958|emb|CAX58065.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 366

 Score = 36.7 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 229 ACASVVAS-GCLHKT------NRAVSVKMLGGGLLIEWHDNNHVFMTGE-----AKKEWE 276
           A A +VA              ++ +SV+  GG   +    ++ + +TG      A+  + 
Sbjct: 288 ASACLVAGSVANGLARVGTARDQRLSVEHPGGEFSVLLQRDDRLQLTGAGLLRTARLIFA 347

Query: 277 GKLDIKTGKW 286
           G++ I    W
Sbjct: 348 GEVMIPASVW 357


>gi|308376153|ref|ZP_07668205.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu008]
 gi|308352028|gb|EFP40879.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu008]
          Length = 561

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V        V +  
Sbjct: 379 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 437

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 438 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 496

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 497 GHPDVFDALVVGVPDP 512


>gi|31560132|ref|NP_080977.2| phenazine biosynthesis-like domain-containing protein 1 [Mus
           musculus]
 gi|110282978|sp|Q9DCG6|PBLD1_MOUSE RecName: Full=Phenazine biosynthesis-like domain-containing protein
           1
 gi|18044106|gb|AAH19997.1| Phenazine biosynthesis-like protein domain containing [Mus
           musculus]
 gi|74180834|dbj|BAE25623.1| unnamed protein product [Mus musculus]
 gi|148700112|gb|EDL32059.1| mCG123414, isoform CRA_a [Mus musculus]
          Length = 288

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + +  +V++S        K  RA      GG L I    +  V + G A    EG L 
Sbjct: 230 TGSAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDGRVDIKGGAVIVLEGTLT 287


>gi|12833053|dbj|BAB22369.1| unnamed protein product [Mus musculus]
          Length = 288

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + +  +V++S        K  RA      GG L I    +  V + G A    EG L 
Sbjct: 230 TGSAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDGRVDIKGGAVIVLEGTLT 287


>gi|78045786|ref|YP_361961.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78034216|emb|CAJ21861.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 575

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         V V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254


>gi|325925720|ref|ZP_08187096.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas perforans 91-118]
 gi|325543889|gb|EGD15296.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas perforans 91-118]
          Length = 575

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         V V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254


>gi|325922012|ref|ZP_08183816.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas gardneri ATCC
           19865]
 gi|325547515|gb|EGD18565.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas gardneri ATCC
           19865]
          Length = 575

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +  A   L  T  A  V  L G   +EW +   V MTG
Sbjct: 206 ITLLCGSGCAGAHDAVVALADTLGAPIVHALRGKEYVEWENPFDVGMTG 254


>gi|289669879|ref|ZP_06490954.1| pyruvate dehydrogenase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 575

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         V V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWENPFDVGMTG 254


>gi|289664991|ref|ZP_06486572.1| pyruvate dehydrogenase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 575

 Score = 36.3 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         V V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWENPFDVGMTG 254


>gi|325916205|ref|ZP_08178489.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537625|gb|EGD09337.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas vesicatoria ATCC
           35937]
          Length = 580

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         + V  L G   +EW +   V MTG
Sbjct: 211 VTLLCGSGCAGAHDAVVA-LAEMLGAPI-VHALRGKEYVEWENPFDVGMTG 259


>gi|259415244|ref|ZP_05739166.1| proline racemase [Silicibacter sp. TrichCH4B]
 gi|259349154|gb|EEW60908.1| proline racemase [Silicibacter sp. TrichCH4B]
          Length = 308

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
           L+ +  D      +   + D + +  CG+G   +   L    R+K      ET  G++  
Sbjct: 60  LLVEPVDPECVTGVIYFDAD-AVLGMCGHGTIGLAVTLAHMGRIKVGIHKIETSAGVVTV 118

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           + +   ++SV   E       + +              G         P  V+ GN
Sbjct: 119 ELHDANTVSVTNIESRRIHHAVSVEVPDHGTITGDMAYGGNWFFIADAPMEVTTGN 174


>gi|21240998|ref|NP_640580.1| pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106286|gb|AAM35116.1| pyruvate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 575

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACAS--VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +   V +         V V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVA-LADTLGAPV-VHALRGKEYVEWDNPFDVGMTG 254


>gi|328470895|gb|EGF41806.1| hypothetical protein VP10329_08862 [Vibrio parahaemolyticus 10329]
          Length = 251

 Score = 36.3 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            +  D  IR     G E+  CG+G       L S+  R     ++  G +   E  DG  
Sbjct: 51  QSGSDYHIRWFTLAG-EINLCGHGSLGAGAALISKYHRNEVILQSSHGHITVSEL-DGMY 108

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
            + M         IPL       D   F   P++    R+  VV
Sbjct: 109 RILMPSWQAKPHAIPL-------DISGFSNRPIDAFTTRDLVVV 145


>gi|308378358|ref|ZP_07482305.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu009]
 gi|308352815|gb|EFP41666.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu009]
          Length = 534

 Score = 36.3 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V        V +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|149908377|ref|ZP_01897040.1| phenazine biosynthesis protein, PhzF family [Moritella sp. PE36]
 gi|149808540|gb|EDM68475.1| phenazine biosynthesis protein, PhzF family [Moritella sp. PE36]
          Length = 286

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 46/206 (22%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVV--RFLTSRMKRKSFTFETIRGILVAKENR 112
             D  VD  +       +EV  CG+         +  + +    +   T  GIL    + 
Sbjct: 51  SNDDEVDFEVSFFTTT-NEVDFCGHATLATFSIMYQMNLLTAGDYVQRTKAGILPVVIDS 109

Query: 113 DGSISVDMGEPI----LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           DG +++D+  P       ++ I      D       ++            VVS G    I
Sbjct: 110 DGQVTMDLQLPETLGGFSYQEIAPVLGIDSAILASTNL---------PIEVVSTGLADLI 160

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAAC 225
             V   +   DL +  +L                     + +    +ER   G   TA+C
Sbjct: 161 IPVP--IGQLDLINPNDL----------AITDFC--KKHDIVGFHVFERCAPGSLFTASC 206

Query: 226 -------------GSAACASVVASGC 238
                         + + +  +A   
Sbjct: 207 RNFAPLFGIPEESATGSASGALACYL 232


>gi|322614832|gb|EFY11757.1| hypothetical protein SEEM315_01076 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619273|gb|EFY16153.1| hypothetical protein SEEM971_04233 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623085|gb|EFY19927.1| hypothetical protein SEEM973_05111 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628375|gb|EFY25163.1| hypothetical protein SEEM974_15560 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634781|gb|EFY31512.1| hypothetical protein SEEM201_17855 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638653|gb|EFY35348.1| hypothetical protein SEEM202_15575 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640957|gb|EFY37604.1| hypothetical protein SEEM954_06863 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645459|gb|EFY41987.1| hypothetical protein SEEM054_03894 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651656|gb|EFY48028.1| hypothetical protein SEEM675_02477 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654442|gb|EFY50764.1| hypothetical protein SEEM965_11104 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661284|gb|EFY57510.1| hypothetical protein SEEM19N_15707 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665058|gb|EFY61246.1| hypothetical protein SEEM801_01341 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667803|gb|EFY63963.1| hypothetical protein SEEM507_07759 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671786|gb|EFY67907.1| hypothetical protein SEEM877_03321 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677169|gb|EFY73233.1| hypothetical protein SEEM867_18174 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680169|gb|EFY76208.1| hypothetical protein SEEM180_05155 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685403|gb|EFY81399.1| hypothetical protein SEEM600_09774 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194711|gb|EFZ79900.1| hypothetical protein SEEM581_04114 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199918|gb|EFZ85006.1| hypothetical protein SEEM501_05441 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202483|gb|EFZ87524.1| hypothetical protein SEEM460_16242 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205785|gb|EFZ90748.1| hypothetical protein SEEM020_05304 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209804|gb|EFZ94726.1| hypothetical protein SEEM6152_06753 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218027|gb|EGA02741.1| hypothetical protein SEEM0077_06348 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219307|gb|EGA03797.1| hypothetical protein SEEM0047_22400 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323231974|gb|EGA16081.1| hypothetical protein SEEM0052_16539 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234501|gb|EGA18588.1| hypothetical protein SEEM3312_15230 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237952|gb|EGA22011.1| hypothetical protein SEEM5258_02998 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243446|gb|EGA27465.1| hypothetical protein SEEM1156_03884 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249729|gb|EGA33634.1| hypothetical protein SEEM9199_03598 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253753|gb|EGA37580.1| hypothetical protein SEEM8282_12105 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254832|gb|EGA38628.1| hypothetical protein SEEM8283_18040 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260765|gb|EGA44369.1| hypothetical protein SEEM8284_20868 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266567|gb|EGA50054.1| hypothetical protein SEEM8285_01295 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271292|gb|EGA54718.1| hypothetical protein SEEM8287_05597 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 297

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFET-IRGILVAK--- 109
           +    D  IR       EV  CG+       ++ +       +  ++T + G    +   
Sbjct: 52  KSEESDVHIRYFTPT-VEVPICGHAT-VAAHYVRATVLGLGNTTVWQTSLAGRHRVEIHA 109

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           E+ D  I+++ G+P  +    PL            ++   + +      V S G+   + 
Sbjct: 110 EHNDYRITLEQGQPSFEP---PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMI 166

Query: 170 FVEDDLY 176
            ++ D+ 
Sbjct: 167 LLKPDVD 173


>gi|188574846|ref|YP_001911775.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519298|gb|ACD57243.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 575

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +  A   L  T  A  V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWENPFDVGMTG 254


>gi|58583823|ref|YP_202839.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625626|ref|YP_452998.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58428417|gb|AAW77454.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369566|dbj|BAE70724.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 575

 Score = 36.3 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +  A   L  T  A  V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWENPFDVGMTG 254


>gi|293344976|ref|XP_002725875.1| PREDICTED: phenazine biosynthesis-like domain-containing
           protein-like [Rattus norvegicus]
 gi|293356795|ref|XP_002728992.1| PREDICTED: phenazine biosynthesis-like domain-containing
           protein-like [Rattus norvegicus]
          Length = 288

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            GG L I    +  V M G A    EG L 
Sbjct: 258 RGGELDISLRPDGRVDMKGGAAVVLEGMLT 287


>gi|163941035|ref|YP_001645919.1| PhzF family phenazine biosynthesis protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163863232|gb|ABY44291.1| phenazine biosynthesis protein PhzF family [Bacillus
           weihenstephanensis KBAB4]
          Length = 299

 Score = 36.3 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D +T + +  ++      F++   +   + A  D  IR     G E   C +     +  
Sbjct: 29  DGLTEEEMQRIAEK--VGFNETAFVLSSEVA--DIRIRYFTP-GHENDLCVHATVGTIYA 83

Query: 88  LTSRM---KRKSFTFETIRGILVAKE--NRDGSISVDM 120
           L  R     + + T ET  G+L      N +G   + M
Sbjct: 84  LHKRGILGGKHNLTIETKAGVLPIHIDANENGETFIKM 121


>gi|167034878|ref|YP_001670109.1| PhzF family phenazine biosynthesis protein [Pseudomonas putida
           GB-1]
 gi|166861366|gb|ABY99773.1| phenazine biosynthesis protein PhzF family [Pseudomonas putida
           GB-1]
          Length = 262

 Score = 36.3 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 39/222 (17%)

Query: 73  EVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           EV  CG+        L  ++  ++    F T  G L      +G +++D      +   I
Sbjct: 67  EVDLCGHATLASAYVLFEQLGEQTQVLRFNTRSGELRVSRGANGLLAMDFPAKQPEAVDI 126

Query: 131 P--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
           P  L ++         +      + + +  ++    P  +     D+    + + G    
Sbjct: 127 PAGLLQALGLNAAQALYRSDDYVVVIDDALLLDTLKPDFVALSAFDVRGIAVTAPGRGFD 186

Query: 189 KHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
                F   V ++       + +                + +  + +A     +  ++V 
Sbjct: 187 FVTRWFGPRVGVN------EDPV----------------TGSAHTSLAPVWAERLGKSV- 223

Query: 248 VKMLG--------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              LG        G L  E   N  V ++G A     G + I
Sbjct: 224 ---LGCEQGGARKGQLQCEVSGNGRVIISGRAALYLRGTVYI 262


>gi|307081692|ref|ZP_07490862.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu011]
 gi|308360619|gb|EFP49470.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu011]
 gi|323717785|gb|EGB26982.1| fatty-acid-CoA ligase FadD19 [Mycobacterium tuberculosis CDC1551A]
          Length = 525

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|119384189|ref|YP_915245.1| PhzF family phenazine biosynthesis protein [Paracoccus
           denitrificans PD1222]
 gi|119373956|gb|ABL69549.1| phenazine biosynthesis protein PhzF family [Paracoccus
           denitrificans PD1222]
          Length = 291

 Score = 36.3 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     D+++++ +  ++ + N   + + L+        D   RI      E+   G
Sbjct: 23  VVFDA----DDLSTEIMQRIAREMNL-SETVFLLRP--TGDADYRARIFTP-VRELPFAG 74

Query: 79  NGMRCVVRFLTSRMKRKSFTFETIRGI-LVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
           +              R   +     GI LV     D   +  M +    ++ +P+     
Sbjct: 75  HPTIAAAHAFCGEQSRTPQSLTQECGIGLVPIRVEDDLYT--MTQATPQFRDVPVT---- 128

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK--HPMFSE 195
           K +        ++ L      +VS G P  +  + D      L      + +  H + + 
Sbjct: 129 KAELAEAISLQLDLLTNSPHQIVSTGVPWLLLELHDLQALASLRPDLGRIERICHGLGAA 188

Query: 196 GVNLSIARVTSLES--LDLRTW---ERGVGLTAACGS--AACASVVASGC----LHKTNR 244
           G+ +  A   S  +  L +RT+   E GV     CG+   A A+ +A+            
Sbjct: 189 GLTV-FADSGSGATPRLRVRTFAPGE-GVAEDPVCGTGNGAIAAWIATHRDAVPRGGYLS 246

Query: 245 AVSVKM-LGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDI 281
              V+M   G +   W    +   + + G A     G+LD+
Sbjct: 247 EQGVEMGRRGLVNAGWETTAEGLRITIGGAACIVLRGELDL 287


>gi|308374906|ref|ZP_07442019.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu007]
 gi|308348032|gb|EFP36883.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu007]
          Length = 548

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 336 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 394

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 395 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 453

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 454 GHPDVFDALVVGVPDP 469


>gi|294993633|ref|ZP_06799324.1| acyl-CoA synthetase [Mycobacterium tuberculosis 210]
 gi|326905355|gb|EGE52288.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis W-148]
          Length = 548

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|225011927|ref|ZP_03702365.1| phenazine biosynthesis protein PhzF family [Flavobacteria bacterium
           MS024-2A]
 gi|225004430|gb|EEG42402.1| phenazine biosynthesis protein PhzF family [Flavobacteria bacterium
           MS024-2A]
          Length = 262

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 49/241 (20%)

Query: 59  SVDAFIRIINCDGSEVQS--CGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG 114
                +R       E++   CG+        L ++M   +K   FET+ G L        
Sbjct: 54  GERFHLRWFTP---EIEMDLCGHATLATAHCLKTQMNYPKKEIVFETLSGDLTVAMYD-- 108

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               +M         +P+A    K  ++  +I P      R+           ++  E++
Sbjct: 109 ----EMYHLDF-PSRMPIASELPKSIKNSLNIMPKEVYKSRDYV--------LVYDTEEE 155

Query: 175 LYHYDLASFGNLLAKHPMFSEGV-------NLSIA--RVTSLESLDLRTWERGVGLTAAC 225
           +    +     +  +  +   GV       N+       TS  S+     E  V      
Sbjct: 156 IASIQIDRQ--IFDQINLNPGGVIVTAKGDNVDFVSRFFTSQASIL----EDPV------ 203

Query: 226 GSAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + +    +      + ++       +    G LL   +  + V ++G+AK    G L +
Sbjct: 204 -TGSAHCSLVPFWAKRLDKDQLHAFQISERRGELLC-LNKKDRVILSGKAKTYATGTLYL 261

Query: 282 K 282
            
Sbjct: 262 D 262


>gi|15843125|ref|NP_338162.1| acyl-CoA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31794690|ref|NP_857183.1| acyl-CoA synthetase [Mycobacterium bovis AF2122/97]
 gi|57117119|ref|YP_177983.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|121639433|ref|YP_979657.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663378|ref|YP_001284901.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148824721|ref|YP_001289475.1| acyl-CoA synthetase [Mycobacterium tuberculosis F11]
 gi|167969125|ref|ZP_02551402.1| acyl-CoA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215405559|ref|ZP_03417740.1| acyl-CoA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215413434|ref|ZP_03422111.1| acyl-CoA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215429013|ref|ZP_03426932.1| acyl-CoA synthetase [Mycobacterium tuberculosis T92]
 gi|218755296|ref|ZP_03534092.1| acyl-CoA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219559589|ref|ZP_03538665.1| acyl-CoA synthetase [Mycobacterium tuberculosis T17]
 gi|224991930|ref|YP_002646619.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800556|ref|YP_003033557.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 1435]
 gi|254552620|ref|ZP_05143067.1| acyl-CoA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198553|ref|ZP_05766044.1| acyl-CoA synthetase [Mycobacterium tuberculosis T46]
 gi|260202698|ref|ZP_05770189.1| acyl-CoA synthetase [Mycobacterium tuberculosis K85]
 gi|289440945|ref|ZP_06430689.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T46]
 gi|289555780|ref|ZP_06444990.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 605]
 gi|289571754|ref|ZP_06451981.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T17]
 gi|289572167|ref|ZP_06452394.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis K85]
 gi|289747352|ref|ZP_06506730.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 02_1987]
 gi|289752228|ref|ZP_06511606.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T92]
 gi|289763693|ref|ZP_06523071.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis GM 1503]
 gi|297636185|ref|ZP_06953965.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|298526992|ref|ZP_07014401.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 94_M4241A]
 gi|306777865|ref|ZP_07416202.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu001]
 gi|306973983|ref|ZP_07486644.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu010]
 gi|308371375|ref|ZP_07424741.2| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu003]
 gi|313660509|ref|ZP_07817389.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|81706952|sp|Q7D5D8|FAC19_MYCTU RecName: Full=Long-chain-fatty-acid--CoA ligase FadD19; Short=FACL;
           AltName: Full=Acyl-CoA synthetase
 gi|81712037|sp|Q7TWB7|FAC19_MYCBO RecName: Full=Long-chain-fatty-acid--CoA ligase FadD19; Short=FACL;
           AltName: Full=Acyl-CoA synthetase
 gi|13883473|gb|AAK47976.1| substrate--CoA ligase, putative [Mycobacterium tuberculosis
           CDC1551]
 gi|31620287|emb|CAD95730.1| PROBABLE FATTY-ACID-COA LIGASE FADD19 (FATTY-ACID-COA SYNTHETASE)
           (FATTY-ACID-COA SYNTHASE) [Mycobacterium bovis
           AF2122/97]
 gi|41352800|emb|CAE55608.1| PROBABLE FATTY-ACID-CoA LIGASE FADD19 (FATTY-ACID-CoA SYNTHETASE)
           (FATTY-ACID-CoA SYNTHASE) [Mycobacterium tuberculosis
           H37Rv]
 gi|121495081|emb|CAL73567.1| Probable fatty-acid-CoA ligase fadD19 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148507530|gb|ABQ75339.1| fatty-acid-CoA ligase FadD19 [Mycobacterium tuberculosis H37Ra]
 gi|148723248|gb|ABR07873.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis F11]
 gi|224775045|dbj|BAH27851.1| acyl-CoA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253322059|gb|ACT26662.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 1435]
 gi|289413864|gb|EFD11104.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T46]
 gi|289440412|gb|EFD22905.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 605]
 gi|289536598|gb|EFD41176.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis K85]
 gi|289545508|gb|EFD49156.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T17]
 gi|289687880|gb|EFD55368.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 02_1987]
 gi|289692815|gb|EFD60244.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T92]
 gi|289711199|gb|EFD75215.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis GM 1503]
 gi|298496786|gb|EFI32080.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis 94_M4241A]
 gi|308213742|gb|EFO73141.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu001]
 gi|308328910|gb|EFP17761.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu003]
 gi|308356665|gb|EFP45516.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu010]
 gi|328460287|gb|AEB05710.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis KZN 4207]
          Length = 548

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|306790783|ref|ZP_07429105.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu004]
 gi|308332807|gb|EFP21658.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu004]
          Length = 549

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|297733179|ref|ZP_06962297.1| acyl-CoA synthetase [Mycobacterium tuberculosis KZN R506]
          Length = 546

 Score = 36.3 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 333 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 391

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 392 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 450

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 451 GHPDVFDALVVGVPDP 466


>gi|260184430|ref|ZP_05761904.1| acyl-CoA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|289445107|ref|ZP_06434851.1| fatty-acid-CoA ligase fadD18 [Mycobacterium tuberculosis CPHL_A]
 gi|289418065|gb|EFD15266.1| fatty-acid-CoA ligase fadD18 [Mycobacterium tuberculosis CPHL_A]
          Length = 548

 Score = 36.3 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|313497608|gb|ADR58974.1| Proline racemase [Pseudomonas putida BIRD-1]
          Length = 308

 Score = 36.3 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 68/234 (29%), Gaps = 43/234 (18%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV---RF 87
           D        +    D ++  L      A+    +   N  G  +  CG+G   +V   ++
Sbjct: 43  DRWRRACLLEPRGNDVLVGALYCPPVSANATCGVIFFNNAG-YLNMCGHGTIGLVASLQY 101

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSIS--------------VDMGEPILDWKLIPLA 133
           L   +       +T  G + A  + DG+I+              VD+    +    I   
Sbjct: 102 L-GLIAPGVHKIDTPVGQVSATLHDDGAITIGNVHSYRYRQQVAVDVPGHGVVHGDIAWG 160

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
            ++  +  +      +++  +   +  +M        ++           G  +    +F
Sbjct: 161 GNWFFLVAEHGQRIELDNREVLTEYTWAM--------LKALEAQGITGENGAPIDHVELF 212

Query: 194 SEGVNL---SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           ++  N    +              ++R       CG+   A +       K   
Sbjct: 213 ADDANADSRNFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255


>gi|166710188|ref|ZP_02241395.1| pyruvate dehydrogenase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 575

 Score = 36.3 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +  A   L  T  A  V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVSLADTLGAPVVHALRGKEYVEWENPFDVGMTG 254


>gi|308372665|ref|ZP_07429408.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu005]
 gi|308340299|gb|EFP29150.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu005]
          Length = 516

 Score = 36.3 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|308373937|ref|ZP_07434195.2| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu006]
 gi|308343564|gb|EFP32415.1| putative AMP-binding enzyme [Mycobacterium tuberculosis SUMu006]
          Length = 518

 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 333 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 391

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 392 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 450

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 451 GHPDVFDALVVGVPDP 466


>gi|289582249|ref|YP_003480715.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC
           43099]
 gi|289531802|gb|ADD06153.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC
           43099]
          Length = 302

 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 4/116 (3%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115
               D  ++       EV  CG+        L     +  + T ET  G+L    + DG 
Sbjct: 56  SDEADYRVQYFTPT-QEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLDIDVSDDG- 113

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            +V M +     + + L+ +                       V S G P  +  +
Sbjct: 114 -TVWMTQNTPQVREVDLSYARAAEVLGVEQAALEGARDDIPLAVSSTGLPFLVVPI 168


>gi|215432487|ref|ZP_03430406.1| acyl-CoA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289755644|ref|ZP_06515022.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis EAS054]
 gi|289696231|gb|EFD63660.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis EAS054]
          Length = 548

 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|308369151|ref|ZP_07416733.2| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu002]
 gi|308328497|gb|EFP17348.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis SUMu002]
          Length = 515

 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|239618454|ref|YP_002941776.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF
           19.5.1]
 gi|239507285|gb|ACR80772.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF
           19.5.1]
          Length = 278

 Score = 36.3 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            GG LL+E    + V++TG A    +G L
Sbjct: 245 RGGELLLEITGGDRVYITGNAVTILKGTL 273


>gi|325271980|ref|ZP_08138429.1| PhzF family phenazine biosynthesis protein [Pseudomonas sp. TJI-51]
 gi|324102881|gb|EGC00279.1| PhzF family phenazine biosynthesis protein [Pseudomonas sp. TJI-51]
          Length = 262

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 31/218 (14%)

Query: 73  EVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           EV  CG+        L  ++  ++    F T  G L      DG +++D        + +
Sbjct: 67  EVDLCGHATLASAYVLFEQLGEQAQALRFNTRSGELRVSRGADGLLAMDFPAKQPLAEDM 126

Query: 131 P--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
           P  L ++         +      + + +  ++    P  +     D+    + + G    
Sbjct: 127 PQGLLQALGLSQAQALYRSDDYVVVIDDALLLDTLKPDFVALSAFDVRGIAVTAAGRGFD 186

Query: 189 KHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
                F   V ++       + +                + +  + +A     +  + V 
Sbjct: 187 FVTRWFGPNVGVN------EDPV----------------TGSAHTSLAPLWAERLGKQVL 224

Query: 248 VKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               GG     LL E   N  V ++G A     G + I
Sbjct: 225 ACEQGGARKGQLLCEVPGNGRVIISGRAALYLRGTVYI 262


>gi|312961132|ref|ZP_07775637.1| proline racemase [Pseudomonas fluorescens WH6]
 gi|311284790|gb|EFQ63366.1| proline racemase [Pseudomonas fluorescens WH6]
          Length = 308

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 25/225 (11%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D        +    D ++  L            +   N  G     CG+G   ++  L  
Sbjct: 43  DQWRRACLLEPRGNDVLVGALYCAPVTPGATCGVIFFNNAGYLG-MCGHGTIGLMASLHH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
             R++    T +T  G + A  + DG++++         + +P+              G 
Sbjct: 102 LGRIQPGVHTLDTPVGPVAATLHEDGAVTLRNVPAYRYRQHVPVQVPGHGTVHGDIAWGG 161

Query: 149 V------NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL--- 199
                   H    +   V     +    ++         + G L+    +F++  +    
Sbjct: 162 NWFFLVSEHGKTLDMSHVDALTDYTWAMLKALEDQGIGGAEGALIDHIELFADDAHADSR 221

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           +              ++R       CG+   A +       K   
Sbjct: 222 NFVMCPGKA------YDRSP-----CGTGTSAKLACLAADGKLAE 255


>gi|307318307|ref|ZP_07597742.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti
           AK83]
 gi|306895989|gb|EFN26740.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti
           AK83]
          Length = 305

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 29/216 (13%)

Query: 14  IGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
            GN++ VI D RG    ++   + A++T+    + ++ ++   ++    A +RI     +
Sbjct: 18  AGNQLAVIPDARG----LSEARMQAIATE--FGYSEVTVVLPPENPENTARVRIFTPT-T 70

Query: 73  EVQSCG--NGMRCVV----RFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125
           EV   G  N     V    + +  R    +  FE   G++       DG ++   G  I+
Sbjct: 71  EVPFAGHPNVGTAFVLGRQQEIFGRNPGGALRFEEKAGLVEVTLLGSDGIVT---GARIV 127

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDDLYHYDLASF 183
             + + +  + D            + L  RN  P  +S+G P ++  V       D+ + 
Sbjct: 128 APQALQIGPAIDAATIAACASLRQDDLIDRNHPPVRISVGLPFSVAEVR------DVEAL 181

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWER 217
                    F E  N+         SL L  RT ER
Sbjct: 182 SRARPNVSAFEE-ANIRYPLAEDSFSLFLYARTRER 216


>gi|289435213|ref|YP_003465085.1| phenazine biosynthesis protein, PhzF family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171457|emb|CBH28001.1| phenazine biosynthesis protein, PhzF family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 292

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           D  ++D +  ++      F++ + I   +       +R     G E   CG+     +  
Sbjct: 28  DTYSTDEMQKIAKK--VGFNETVFI--CKSGLAAMKLRYFTP-GFETPLCGHATMGAIFA 82

Query: 88  LTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125
           L +    +    ET  G+L    E ++  I++    P  
Sbjct: 83  LLNGNDDQQLEIETGAGVLQINYEAKNPKITMHQATPKF 121


>gi|26987993|ref|NP_743418.1| proline racemase [Pseudomonas putida KT2440]
 gi|24982709|gb|AAN66882.1|AE016316_7 epimerase, putative [Pseudomonas putida KT2440]
          Length = 308

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L      A     +   N  G  +  CG+G   +V  L  
Sbjct: 43  DRWRRACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
              +       +T  G + A  + DG+I+V
Sbjct: 102 MGLITPGVHKIDTPVGQVSATLHEDGAITV 131


>gi|55732467|emb|CAH92934.1| hypothetical protein [Pongo abelii]
          Length = 254

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            GG L I    +  V +TG A    EG L 
Sbjct: 225 RGGELGISLRPDGRVDITGSAAVVLEGTLT 254


>gi|15966521|ref|NP_386874.1| hypothetical protein SMc03984 [Sinorhizobium meliloti 1021]
 gi|307300442|ref|ZP_07580222.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti
           BL225C]
 gi|15075792|emb|CAC47347.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306904608|gb|EFN35192.1| phenazine biosynthesis protein PhzF family [Sinorhizobium meliloti
           BL225C]
          Length = 305

 Score = 35.9 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)

Query: 14  IGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
            GN++ VI D RG    ++   + A++T+    + ++  +   ++    A +RI     +
Sbjct: 18  AGNQLAVIPDARG----LSEARMQAIATE--FGYSEVTFVLPPENPENTARVRIFTPT-T 70

Query: 73  EVQSCG--NGMRCVV----RFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPIL 125
           EV   G  N     V    + +  R    +  FE   G++       DG ++   G  I+
Sbjct: 71  EVPFAGHPNVGTAFVLGRQQEIFGRNPGGALRFEEKAGLVEVTLLGSDGIVT---GARIV 127

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRN--PFVVSMGNPHAIFFVEDDLYHYDLASF 183
             + + +  + D            + L  RN  P  +S+G P ++  V       D+ + 
Sbjct: 128 APQALQIGPAIDAATIAACASLRQDDLIDRNHPPVRISVGLPFSVAEVR------DVEAL 181

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWER 217
                    F E  N+         SL L  RT ER
Sbjct: 182 SRARPNVSAFEE-ANIRYPLAEDSFSLFLYARTRER 216


>gi|258623596|ref|ZP_05718590.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584114|gb|EEW08869.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 289

 Score = 35.9 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVV--RFLTSRMKRKSFTFETIRGILVAKENR 112
             D   D  +      G EV  CG+         +    +    +   T  G+LV     
Sbjct: 52  SLDDEADFELSFFTTTG-EVDFCGHATLAAFSTMYQDGIITEGKYLQRTKAGLLVVTIEA 110

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGNPHAIFFV 171
           +G I +D+  P    +         ++  +   +        R P  V S G P  I  V
Sbjct: 111 NGHIVMDLKLPEFRGEFS------YEVISELIGLDSALLESTRLPIEVISTGLPDIIVPV 164

Query: 172 E 172
            
Sbjct: 165 P 165


>gi|161521803|ref|YP_001585230.1| proline racemase [Burkholderia multivorans ATCC 17616]
 gi|189352035|ref|YP_001947662.1| proline racemase [Burkholderia multivorans ATCC 17616]
 gi|160345853|gb|ABX18938.1| proline racemase [Burkholderia multivorans ATCC 17616]
 gi|189336057|dbj|BAG45126.1| proline racemase [Burkholderia multivorans ATCC 17616]
          Length = 348

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 48/268 (17%)

Query: 31  TSDAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
           T D++  L   +     Q+   L+         A   ++  D +     G+   CVV  L
Sbjct: 44  TDDSLRRLVVLEPRGCLQMSVNLLLPPTRPEAHAGFIVLQADKAHP-MSGSNCICVVTAL 102

Query: 89  TSRM------KRKSFTFETIRGILVAKEN-RDGS---ISVDMGEPILDWKLIPLARSFDK 138
                        +   +T  G++ A+   RDG    +S+DM    ++   + +      
Sbjct: 103 LELGMVPMQEPETTVVLDTPAGLVTARATCRDGRCVGVSLDMVPSFVEQLDVDVHTPEFG 162

Query: 139 MDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK-------- 189
                   G V + L   +   +S+                 LA+ G  L +        
Sbjct: 163 TLPVDIAFGGVYYALVDVDRIGLSI----------APDNARQLATHGVRLREIINRQVSV 212

Query: 190 -HPMFSEGVNLSIARVTSLESLDLRTWE--------RGVGLTAACGSAAC---ASVVASG 237
            HP++ E +N  +A V     +D   ++        R V  +  CG+ +    A++ A G
Sbjct: 213 QHPLYPE-IN-EVAYVMFRHRVDDTVYQTCTTLPPGR-VDRSP-CGTGSSANLATLAARG 268

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHV 265
            +H  +   S   +GG   +E      V
Sbjct: 269 RVHVGDCLTSRSTIGGEFRVEMLGTTEV 296


>gi|86747329|ref|YP_483825.1| pyruvate dehydrogenase [Rhodopseudomonas palustris HaA2]
 gi|86570357|gb|ABD04914.1| pyruvate dehydrogenase (cytochrome) [Rhodopseudomonas palustris
           HaA2]
          Length = 576

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 218 GVGL-TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           G G  T  CG     +      L +  ++  V  LGG   +E+ +   V MTG
Sbjct: 201 GAGRVTLFCGRGCAGAHAPLMALAEALKSPIVHALGGKEHVEYDNPYDVGMTG 253


>gi|21229684|ref|NP_635601.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66766561|ref|YP_241323.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188989623|ref|YP_001901633.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111167|gb|AAM39525.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66571893|gb|AAY47303.1| pyruvate dehydrogenase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167731383|emb|CAP49558.1| pyruvate dehydrogenase (cytochrome) [Xanthomonas campestris pv.
           campestris]
          Length = 575

 Score = 35.9 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS    +  A   L  T  A  V  L G   +EW +   V MTG
Sbjct: 206 VTLLCGSGCAGAHDAVVALADTLGAPIVHALRGKEHVEWSNPFDVGMTG 254


>gi|325273670|ref|ZP_08139881.1| proline racemase [Pseudomonas sp. TJI-51]
 gi|324101197|gb|EGB98832.1| proline racemase [Pseudomonas sp. TJI-51]
          Length = 308

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL-- 88
           D        +    D ++  L      A     +   N  G  +  CG+G   +V  L  
Sbjct: 43  DPWRRACLLEPRGNDVLVGALYCPPVSADATCGVIFFNNAG-YLNMCGHGTIGLVASLQH 101

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISV 118
              +       +T  G + A  + DG+++V
Sbjct: 102 LGLIAPGVHKIDTPVGQVSATLHEDGAVTV 131


>gi|152971785|ref|YP_001336894.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956634|gb|ABR78664.1| translocation protein TolB precursor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 391

 Score = 35.9 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 21  IDMRGCHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGS------ 72
           +D+R     +  +    L       FD   +   H+     VDA + ++N DGS      
Sbjct: 173 VDLRSGASQVIHEEKIWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVK 232

Query: 73  ---EVQSC--------GNGMRCVVRFLTSRMKRKSFTFETIRGI 105
                +SC        G+ +   V +L  +  R  + F+   G+
Sbjct: 233 AHAPGESCTHEFWVPDGSAL-IYVSYLKGQQGRTIYRFDPESGV 275


>gi|215447849|ref|ZP_03434601.1| acyl-CoA synthetase [Mycobacterium tuberculosis T85]
 gi|289759671|ref|ZP_06519049.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T85]
 gi|289715235|gb|EFD79247.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis T85]
          Length = 548

 Score = 35.9 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCV--------VRFLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V        V +  
Sbjct: 335 TGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|188577549|ref|YP_001914478.1| proline racemase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522001|gb|ACD59946.1| proline racemase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 237

 Score = 35.9 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +   N  G     CG+G   VVR L    R+       ET  G +  +   DG++SVD
Sbjct: 1   MIFFNNVGYLG-MCGHGTIGVVRTLAELGRIAPGRHRIETPVGTVGVELADDGTVSVD 57


>gi|229590776|ref|YP_002872895.1| hypothetical protein PFLU3324 [Pseudomonas fluorescens SBW25]
 gi|229362642|emb|CAY49550.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 308

 Score = 35.9 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 33  DAINALSTDDNTHFDQIM--LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT- 89
           D        +    D ++  L  +         +   N  G     CG+G   +V  L  
Sbjct: 43  DKWRRACILEPRGNDVLVGALYCEPVTPGAICGVIFFNNAGYLG-MCGHGTIGLVASLHH 101

Query: 90  -SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
             R+       +T  G++ A  + DG++++         + +P+   
Sbjct: 102 VGRIAPGMHRIDTPVGLVEATLHEDGAVTLGNVPAYRHRRQVPVEVP 148


>gi|15791210|ref|NP_281034.1| threonine synthase [Halobacterium sp. NRC-1]
 gi|169236966|ref|YP_001690166.1| threonine synthase [Halobacterium salinarum R1]
 gi|10581834|gb|AAG20514.1| threonine synthase [Halobacterium sp. NRC-1]
 gi|167728032|emb|CAP14820.1| threonine synthase [Halobacterium salinarum R1]
          Length = 415

 Score = 35.9 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 209 SLDLRTWER-GVGLTAACG-SAACASVVASGCLHKTNRAVSVKMLGGGL 255
           ++ +R  ER GV    AC  +   ++ +A+    + +  V V +  G +
Sbjct: 120 TVGVRVAERLGVDR-LACASTGNTSAALAAYG-GRADTPVLVLLPAGKV 166


>gi|254366082|ref|ZP_04982126.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134151594|gb|EBA43639.1| fatty-acid-CoA ligase fadD19 [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 548

 Score = 35.9 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 44  THFDQIMLIHDFQDASVDAFIRI------INCDGSEVQSCGNGMRCVVR--------FLT 89
           T F    ++   Q       +RI      ++ DG+EV+  G+GMR V+         +  
Sbjct: 335 TGFGGTSVVAAGQPHGGGPRVRIDHRTVVLDDDGNEVKP-GSGMRGVIAKKGNIPVGYYK 393

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              K+ + TF TI G+  A       +  D    +L    + +    +K+  +       
Sbjct: 394 DE-KKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALK 452

Query: 150 NHLFLRNPFVVSMGNP 165
            H  + +  VV + +P
Sbjct: 453 GHPDVFDALVVGVPDP 468


>gi|238749801|ref|ZP_04611306.1| hypothetical protein yrohd0001_31220 [Yersinia rohdei ATCC 43380]
 gi|238712456|gb|EEQ04669.1| hypothetical protein yrohd0001_31220 [Yersinia rohdei ATCC 43380]
          Length = 573

 Score = 35.9 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 221 LTAACGSAACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CGS  CA                V V  L G   IEW +   V MTG
Sbjct: 204 ITLLCGSG-CADAHDEVVKLAELLQAPV-VHALRGKEHIEWDNPYSVGMTG 252


>gi|170768105|ref|ZP_02902558.1| phenazine biosynthesis protein PhzF family [Escherichia albertii
           TW07627]
 gi|170122871|gb|EDS91802.1| phenazine biosynthesis protein PhzF family [Escherichia albertii
           TW07627]
          Length = 297

 Score = 35.9 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF 87
           DN++   +  ++ +   H +   L+H       D  IR       EV  CG+       +
Sbjct: 28  DNLSEAQMQLIARELG-HSETAFLLH---SDDSDVRIRYFTPT-VEVPICGHAT-VAAHY 81

Query: 88  LTSRMKR--KSFTFET-IRG---ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141
           + S++        ++T + G   ++V K+N D  IS++ G P  +    PL         
Sbjct: 82  VRSQVLGLGNCTVWQTSLAGKHRVIVEKQNDDYRISLEQGTPGFEP---PLEGETRAAII 138

Query: 142 DRFHIGPVNHLFLRNPFVVSMG 163
           +  H+   + L      V + G
Sbjct: 139 NALHLTEDDILPGLPIQVATTG 160


>gi|312198699|ref|YP_004018760.1| hypothetical protein FraEuI1c_4900 [Frankia sp. EuI1c]
 gi|311230035|gb|ADP82890.1| hypothetical protein FraEuI1c_4900 [Frankia sp. EuI1c]
          Length = 111

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKLDIKTGKWIKKNE 291
            VA       +  V V++  G L IE  D  HV   TG A       LD+   +W++   
Sbjct: 43  AVAFQRADWVDTLVVVEL--GELDIECDDGTHVTFRTG-AVLV----LDLPEPRWLRNPG 95

Query: 292 D 292
           D
Sbjct: 96  D 96


>gi|311899634|dbj|BAJ32042.1| putative long-chain fatty-acid--CoA ligase [Kitasatospora setae
           KM-6054]
          Length = 606

 Score = 35.9 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 20/74 (27%)

Query: 212 LRTWERGVGLTAACGSAACASVVASG-----CLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
           +  +E G GLT +      A+ V +            R V     G  + I   ++  V+
Sbjct: 377 MTVYE-GYGLTES------AAAVTANPPRRPKFGTVGRPV----PGSTVAI--AEDGEVW 423

Query: 267 MTGEAKKEWEGKLD 280
           + G     + G L+
Sbjct: 424 VKGP--GVFSGYLN 435


>gi|149203022|ref|ZP_01879993.1| Large exoprotein [Roseovarius sp. TM1035]
 gi|149143568|gb|EDM31604.1| Large exoprotein [Roseovarius sp. TM1035]
          Length = 5082

 Score = 35.9 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 24/128 (18%)

Query: 13   GIGNKIL-------VIDMRGCHDNITSDAINALSTDDNTHFDQIM------------LIH 53
            G GN  L       VID    +D I   A N + T      D  +            +I 
Sbjct: 4953 GAGNDFLAGGGRNDVIDGGTGNDTINGGAGNDIMT---GGADADIFVFSAFVDGELDVIT 5009

Query: 54   DFQDASVDAFIRIINCDGSEVQSC--GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
            DF+D +    IRI+N D  EV     GNG++  V  L      +         I++ +  
Sbjct: 5010 DFEDGTDRLLIRIVNPDTGEVNISNGGNGLQGFVDALGITQADEGAQINVNGQIILLEGV 5069

Query: 112  RDGSISVD 119
                + VD
Sbjct: 5070 DASVLGVD 5077


>gi|170751247|ref|YP_001757507.1| thiamine pyrophosphate binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657769|gb|ACB26824.1| thiamine pyrophosphate protein TPP binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 575

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +T  CG     +      L +  +A  V  LGG   +EW +   V MTG
Sbjct: 206 VTLFCGRGCAGAHAELLQLAEALKAPVVHALGGKEHVEWDNPYDVGMTG 254


>gi|262193940|ref|YP_003265149.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM
           14365]
 gi|262194066|ref|YP_003265275.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM
           14365]
 gi|262077287|gb|ACY13256.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM
           14365]
 gi|262077413|gb|ACY13382.1| short-chain dehydrogenase/reductase SDR [Haliangium ochraceum DSM
           14365]
          Length = 259

 Score = 35.5 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
             LT A     CA+V ++         V V MLGG
Sbjct: 55  ADLTQA---GGCATVASAIRERLGGVDVIVHMLGG 86


>gi|296270910|ref|YP_003653542.1| phenazine biosynthesis protein PhzF family [Thermobispora bispora
           DSM 43833]
 gi|296093697|gb|ADG89649.1| phenazine biosynthesis protein PhzF family [Thermobispora bispora
           DSM 43833]
          Length = 278

 Score = 35.5 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
             +    A +RI    G+E+   G+ +      L  R        ET  G +  +  R G
Sbjct: 51  PAEQGGHARVRIFTP-GTELPFAGHPILGTAWVLAERDGLDRIVLETGSGPVTVEFERAG 109

Query: 115 --SISVDMGEPILDWKLIPLARSFD 137
               S  M +PI  W   P  R+ +
Sbjct: 110 DRLTSGRMRQPIPTWA--PFDRTEE 132


>gi|239980197|ref|ZP_04702721.1| putative long chain fatty acid:CoA ligase [Streptomyces albus
           J1074]
 gi|291452051|ref|ZP_06591441.1| acyl-CoA synthetase [Streptomyces albus J1074]
 gi|291355000|gb|EFE81902.1| acyl-CoA synthetase [Streptomyces albus J1074]
          Length = 650

 Score = 35.5 bits (81), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 227 SAACASVVASG----CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +   A+ V +      L          + GG + I   D+  V + G     + G  D +
Sbjct: 429 TETTAAAVVTPPLKPRLGTVGWP----LPGGRVKI--ADDGEVLLGGG--HVFSGYWDAE 480

Query: 283 TGKWIKKNED 292
           +G+  +   D
Sbjct: 481 SGEITRGPVD 490


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.166    0.581 

Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,366,863,526
Number of Sequences: 14124377
Number of extensions: 313650267
Number of successful extensions: 801078
Number of sequences better than 10.0: 2595
Number of HSP's better than 10.0 without gapping: 3727
Number of HSP's successfully gapped in prelim test: 874
Number of HSP's that attempted gapping in prelim test: 780029
Number of HSP's gapped (non-prelim): 5154
length of query: 296
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 158
effective length of database: 2,893,629,604
effective search space: 457193477432
effective search space used: 457193477432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 81 (35.5 bits)